LOCUS       DAWGNT010000001        47045 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.001, whole genome shotgun sequence.
ACCESSION   DAWGNT010000001 DAWGNT010000000
VERSION     DAWGNT010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 47045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 47045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..47045
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.001"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(67..1365)
                     /locus_tag="WHR98_000001"
     CDS             complement(67..1365)
                     /locus_tag="WHR98_000001"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEZ2306750.1"
                     /translation="MAKNVVVIGAQWGDEGKGKIVDWLAEEVGGVVRFQGGHNAGHTL
                     VVGGKKTILRLIPSGILHENLDCFIGSGVVVSPEALLGEIDELNAAGVKNVEGRLKIA
                     PTCPLILPYHIALDQAREASRGKGKIGTTGRGIGPAYEDKVARRAIRAADLLHPEKLR
                     EKLDAVLAYYNVQLQHLHNAEPVKAEDVMAVIEKVAPRIAPMITDVSRVLNEKNKNGE
                     KLLFEGAQGALLDIDYGTYPFVTSSNCLAGAASAGAGVGPQMLDYVLGIVKAYTTRVG
                     SGPFPTELFDEVGVGLAERGHEFGSVTGRARRCGWFDAAALKRSIQINGISGMCITKL
                     DVMDGVETINICVGYELPDGGKTDILPCGSDAVEACKPIYETMPGWSESTFGVKSYDA
                     LPANAKAYLKRIEEVCGAPVAIVSTGPDREETIVLHHPFA"
     gene            complement(1469..2620)
                     /locus_tag="WHR98_000002"
     CDS             complement(1469..2620)
                     /locus_tag="WHR98_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEZ2306751.1"
                     /translation="MQTWQLPEHIADVLPTNARQLESAREQLLALFRVHGYELVQPPL
                     MEYAHSLLTHIDAGLSLKTILVTDRLSGRQLGIRADITPQVARIDAHLLSANQGINRL
                     CYAGPVLHAQSDGLLNMREPLQAGAEMYGFADIRGDIELIDLMLKSMKIADMGKVLLS
                     LGHIGIFRALSDAAHLDAGQSATLLALMQDKDTGAVEAQVKAWKLDGMWAKAFSLLPR
                     LYGGREVLSDARGRLPDLSAVGGALGELQAVCDAFPDCEIHIDLSELRVDNYHTGLLY
                     AAYAADFHDAVARGGRYDGLGGYFGRARPATGFSFDLRSFIGRLPAIERQPAVLVDAE
                     DAEAAHEAVEALREQGQCVVIDYGIGHNVSEELAGRLKKTDGVWQVVKR"
     gene            2955..4334
                     /gene="norM"
                     /locus_tag="WHR98_000003"
     CDS             2955..4334
                     /gene="norM"
                     /locus_tag="WHR98_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter NorM"
                     /protein_id="HEZ2306752.1"
                     /translation="MLLDLNRFSFSVFLKEVRLLTALALPMLLAQVAQVGIGFIDTVM
                     AGGAGKEDLAAVALGSSAFATVYITFMGIMAALNPMIAQLYGAGKTDEVGETGRQGIW
                     FGLFLGVFGMVLMWAAITPFRNWLTLSDYVEGTMAQYMLFTSLAMPAAMVHRALHAYA
                     SSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPALGGAGCGLATMAVFWFSALALW
                     IYIAKENFFRPFGLTAKFGKPDWAVFKQIWKIGAPIGLSYFLEASAFSFIVFLIAPFG
                     EDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVLGWML
                     AVITVLSLVLFRSPLVSMYNNDPAVLSIAATVLLFAGLFQPADFTQCIASYALRGYKV
                     TKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAIALVWCLELCSR
                     EMVRSHKVV"
     gene            4513..5553
                     /gene="murB"
                     /locus_tag="WHR98_000004"
     CDS             4513..5553
                     /gene="murB"
                     /locus_tag="WHR98_000004"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEZ2306753.1"
                     /translation="MQPIRYRTDLTPYNTFGLRAQARAFIALEHADGLRDIVRLPEFD
                     RDTVLWLGGGSNIVLMQDYAGLVVHMENKGIREIARSDGIVRIEAQAGEIWHDFVLHT
                     VALGLSGLENLSLIPGTVGASPVQNIGAYGVEAKDVIHSVRCFDLDTETFVTLSNADC
                     RFAYRESLFKQEGKGRYVIVSVVFALKTHFVPNLGYGDLAAKVAELSAGREATAKDVS
                     DAVCAIRNSKLPNPNVLGNVGSFFKNPVIGAEKAAALLEQHPDMPHYPQPDGSVKLAA
                     GWLIDQCRLKGFQIGGAAVHGRQALVLVNKNNASANDVRQLAQHIKFTVFARFQVELH
                     AEPNWLPASFSL"
     gene            5565..6215
                     /locus_tag="WHR98_000005"
     CDS             5565..6215
                     /locus_tag="WHR98_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEZ2306754.1"
                     /translation="MPVTRLAKINTYTRIIDASLALFNEEGERNISTNHIAAHLGISP
                     GNLYYHFRNKDEIIVQLFKRYSEALLEYLNEAVLPSDVEDSINYMAGIYDVMWEYRFL
                     FSDVNTLLARSAELLGEHNTFTQAKVSPLLVNLLTQLNGLNIIQADQTAMNDLAVNMW
                     MVTKYWFDFDSSLRGRTKLTEDSKARGIRRTLSLLRPYLLPEHREKYDRKIGNGNP"
     gene            6270..7046
                     /locus_tag="WHR98_000006"
     CDS             6270..7046
                     /locus_tag="WHR98_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEZ2306755.1"
                     /translation="MRAVPPPHISITGLGYLGLPLAQKFYQHGSRVAAIKRSLTSDDI
                     NLPIHLDTFDLGSTDAFQTALWRHHADKPVWFFLLPPSSLTHYADTVKQWAELARACN
                     VQHLIFTSSTSVYGDTARECDEIALPDPQTESARQILAAEQHLLDSGVPNIDILRLGG
                     LYCAERHPVSRLVQKQNIPGGNRPINIVHRNIAVESLFQTAFNPGGRRLKNIIEPRHP
                     TRREFYTEEAAKLGLPAPDFAPDDSVGKIIRTVCDNGLSL"
     gene            7100..7672
                     /locus_tag="WHR98_000007"
     CDS             7100..7672
                     /locus_tag="WHR98_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HEZ2306756.1"
                     /translation="MSALFPIINHLIQQNPDSRSELAAFADKTLALNIAGLKLTGRIT
                     EEGFLSASNGFADTEITFRNSAVQKILQGGEPGVGDISLEGDLILGMAVLPLLGSLRY
                     RASDDLARIFGTQLGNSIGSRAADIGHGIKQIGRSIAEQISEFSREPESPVIDAATLS
                     AWMEEVDKLRDDVARLNERLDRLERDIWID"
     gene            7692..8582
                     /locus_tag="WHR98_000008"
     CDS             7692..8582
                     /locus_tag="WHR98_000008"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEZ2306757.1"
                     /translation="MNSPFHNIGVVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGV
                     RECCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQGH
                     LGFLTQIPREYMTDKLLPVLEGKYLAEERILIEAALIREGKTAERAIALNDAVLSRGG
                     AGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICP
                     QSMTNRPIAIPDTSEIEILVTQGGDARVHFDGQTHIDVQNLDRITIRRYRNPLRILHP
                     TDYQYFKTLRQKLHWGEQLV"
     gene            8607..9365
                     /locus_tag="WHR98_000009"
     CDS             8607..9365
                     /locus_tag="WHR98_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEZ2306758.1"
                     /translation="MNPKTPPDHTEDAVRLSKRMAQLGLCSRREADGYIEQGWVTVNG
                     KTAVLGQKVSPADRIELNKKAHEQQAARITILLNKPVGYVSAQAEKGYKSAAELITPE
                     NRWEGDTGRIRFDPKHKIGLAPAGRLDIDSVGLLVLTQDGRIAKQLIGENSGSEKEYL
                     VRVRGKLDEKGLALLNHGLSLDGEKLRPAQVEWQNEDQLRFVLKQGKKRQIRRMCELV
                     GLRVVGLKRIRMGKVKLGRLPPGKWRYLAPGESF"
     gene            complement(9420..10085)
                     /locus_tag="WHR98_000010"
     CDS             complement(9420..10085)
                     /locus_tag="WHR98_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEZ2306759.1"
                     /translation="MAVLSKEQVLSAFKNRKSCRHYDAARKISAEDFQFILELGRLSP
                     SSVGSEPWQFVVVQNPEIRQAIKPFSWGMADALDTASHLVVFLAKKNARFDSPFMLES
                     LKRRGVTEPDAMAKSLARYQAFQADDIKILDDSRALFDWCCRQTYIALGNMMTGAAMA
                     GIDSCPVEGFNYAEMERVLSGQFGLFDAAEWGVSVAATFGYRVQEIATKARRPLEETV
                     IWA"
     gene            complement(10285..11181)
                     /locus_tag="WHR98_000011"
     CDS             complement(10285..11181)
                     /locus_tag="WHR98_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE2"
                     /protein_id="HEZ2306760.1"
                     /translation="MQLLKASDIISHLQIDGIFPGGNAIPCTHLNNYMNIKEKQLMNT
                     IADVQSSRDLRNLPINQVGIKDLRFPISLKSKEGEQSTVAHLTMTVFLPADQKGTHMS
                     RFVALMEKQTEALDFAQLHRLTAEMIALLDSHSGKIRVSFPFFRKKTAPVSGIQSLLD
                     YDVCLTGEMKDGAYGHSMKVMIPVTSLCPCSKEISQYGAHNQRSHVTVSLTADAEVGI
                     EEVIDYVEAQASCQLYGLLKRPDEKYVTEKAYENPKFVEDMVRDVATSLIADKRIKSF
                     VVESENFESIHNHSAYAYIAYP"
     gene            11250..12407
                     /locus_tag="WHR98_000012"
     CDS             11250..12407
                     /locus_tag="WHR98_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEZ2306761.1"
                     /translation="MKFATKAIHSSYDCDEHNRALMPPIYQNSMFALHEIGENVPYRY
                     SRLSNPTRQILEDTVADLEHGAAGFAFSSGMAGIDAVWRTFLRPGDTIVAVADIYGGA
                     YDLLVDVYQKWGVNVVFADLGNPDNLDELLKAHKVKLVWLETPSNPLLRLVDIKVLAA
                     KAKAAGALVGIDNTFATPYLQQPLDMGCDFVFHSATKYLCGHSDVLMGIVVAKTKELA
                     QPLHDMMVHTGAVAGPMDCWLVLRGIKTLALRMNAHYQNALEIARRLEAHPAIEKVFH
                     PGLPSHEHYELAKTQMPKGIGGVVTVYLKNDTREAANSVIKNMKLVKMASSLGGVESL
                     VNHCYSQSHSGVPHNVKMEMGIRVGLLRFSVGIEDVDDIWNDISAALDTTL"
     gene            complement(12470..13471)
                     /gene="hemB"
                     /locus_tag="WHR98_000013"
     CDS             complement(12470..13471)
                     /gene="hemB"
                     /locus_tag="WHR98_000013"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEZ2306762.1"
                     /translation="MQFPYRNVPASRMRRMRRDDFSRRLMREHTLTADDLIYPVFVLE
                     GSAREEDVPSMPGVKRQSLDRLLFTAEEAVKLGIPMLALFPVVTANKTERAQEAYNPE
                     GLVPSTVRALRERFPELGIMTDVALDPYTVHGQDGLTDENGYVMNDETVEVLVKQALC
                     HAEAGAQVVAPSDMMDGRIGAIREALEDAGHIHTRIMAYSAKYASAFYGPFRDAVGSS
                     GNLGKADKKTYQMDPANTDEALHEVALDIQEGADMVMVKPGLPYLDVVRRVKDEFGVP
                     TYAYQVSGEYAMLQAAVANGWLDGGKVVLESLLAFKRAGADGILTYYAIEAAKMLKR"
     gene            complement(13654..13938)
                     /gene="yhbY"
                     /locus_tag="WHR98_000014"
     CDS             complement(13654..13938)
                     /gene="yhbY"
                     /locus_tag="WHR98_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HEZ2306763.1"
                     /translation="MTDTKLNTKEILELKARAHHLHPVVMVGQQGLTDAVIKETDAAL
                     TAHELIKVRVFGDDRAERIEICTALCEAVDAQPVQHIGKLLVLWRKNIEG"
     gene            14048..14668
                     /locus_tag="WHR98_000015"
     CDS             14048..14668
                     /locus_tag="WHR98_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HEZ2306764.1"
                     /translation="MAVRSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKD
                     KLIKPGTVLADLGSAPGSWSQVAAKLTGTSGAVFALDILPMEAIGGVSFIQGDFREND
                     VLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFL
                     VKVFQGAGYQEYMAAMREIFGTVQTRKPEASRNRSSEIYLLGKNKR"
     gene            14732..16699
                     /gene="ftsH"
                     /locus_tag="WHR98_000016"
     CDS             14732..16699
                     /gene="ftsH"
                     /locus_tag="WHR98_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEZ2306765.1"
                     /translation="MGNTFKSILVWVALGIGLMAAFNALDGKKEDNGQIEYSQFIQQV
                     NNGEVSGVNIEGSVVSGYLIKGERTDKSTFFTNAPLDDNLIKTLLDKNVRVKVTPEEK
                     PSALAALFYSLLPVLLLIGAWFYFMRMQTGGGGKGGAFSFGKSRARLLDKDANKVTFA
                     DVAGCDEAKEEVQEIVDYLKAPNRYQSLGGRVPRGILLAGSPGTGKTLLAKAIAGEAG
                     VPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGN
                     DEREQTLNQLLVEMDGFESNQTVIVIAATNRPDVLDPALQRPGRFDRQVVVPLPDIRG
                     REQILNVHSKKVPLDESVDLLSLARGTPGFSGADLANLVNEAALFAGRRNKVKVDQSD
                     FEDAKDKIYMGPERRSMVMHEDEKRATAYHESGHAIVAESLPFTDPVHKVTIMPRGRA
                     LGLTWQLPERDRISMYKDQMLSQLSILFGGRIAEDIFVGRISTGASNDFERATQMARE
                     MVTRYGMSDKMGVMVYAENEGEVFLGRSVTRSQNISEKTQQDIDAEIRRILDEQYQVA
                     YKILDENRDKMETMCKALMEWETIDRDQVLEIMAGKQPSPPKDYSHNLRENADAAEDN
                     APHAPTREETEAPAPADTASSESEQRPENKA"
     gene            16920..17351
                     /locus_tag="WHR98_000017"
     CDS             16920..17351
                     /locus_tag="WHR98_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HEZ2306766.1"
                     /translation="MKKVEKNILVLHGADKMFELVDKVEDYPNFLPWYSKTEVIGRNG
                     NELKARLFMDYMHVRQSFATHNRNIPGREIRMELLEGPFKTLRGTWKFIDLGDDMCKI
                     EFNLEYDFSNAVLSALISPVFNHLSATLVEAFVKEADRRYA"
     gene            17344..17622
                     /locus_tag="WHR98_000018"
     CDS             17344..17622
                     /locus_tag="WHR98_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HEZ2306767.1"
                     /translation="MLEIEIVYGLPDRQVLKTMQLAEGTTVRAAALQSGLDGIFEDLN
                     LHSAPLGIFGKAVKDDTPLRDGDRIEVYRPLLIDPKEARRKRVQNQEE"
     gene            17675..18253
                     /gene="pth"
                     /locus_tag="WHR98_000019"
     CDS             17675..18253
                     /gene="pth"
                     /locus_tag="WHR98_000019"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEZ2306768.1"
                     /translation="MSNTIKMLVGLGNPGKEYEQTRHNAGFWFLDELAWKWKASFKEE
                     KKFFGEVARAALPDGDVWLLKPATFMNRSGQAVAALAQFYKIKPEEILVVHDELDIPC
                     GRIKFKLGGGNGGHNGLKDIQARLGTADYYRLRLGIDHPGDRNLVVGYVLNKPSAEHR
                     QQIDDAIAKSLQAIPDIISGKWEEATRFLHSK"
     gene            18313..18519
                     /locus_tag="WHR98_000020"
     CDS             18313..18519
                     /locus_tag="WHR98_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dioxygenase"
                     /protein_id="HEZ2306769.1"
                     /translation="MSELNRLIQTESVAVIEETLNFLLYECSIDDAPSAEEIAVWRDM
                     LAARGGKFLRLSKLCRTWLEEEQA"
     gene            18516..18878
                     /locus_tag="WHR98_000021"
     CDS             18516..18878
                     /locus_tag="WHR98_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEZ2306770.1"
                     /translation="MNLPRNRFILLSALWFAGGIYSLLFKAADTAPPPFPHFDKAAHL
                     ALFFAQIWLLTKAFRTDNRPIPYRSLMVFALCFALFSECAQAWFTATRTGSLGDVLAD
                     MAGTVLALFAARAADRPD"
     gene            19109..20524
                     /locus_tag="WHR98_000022"
     CDS             19109..20524
                     /locus_tag="WHR98_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13/DASS family transporter"
                     /protein_id="HEZ2306771.1"
                     /translation="MNLHAKDKTQHPENVELLSAQKPITDFKGLLTTIISAVVCFGIY
                     HILPYSPDANKGIALLIFVAALWFTEAVHITVTALMIPILAVVLGFPDMDIKKAMADF
                     SNPIIYIFFGGFALATALHMQRLDRKIAVALLRLSRGSMKAAVLMLFLVTAFLSMWIS
                     NTATAAMMLPLAMGMLSHLDREKERKTYVFVLLGIAYCASIGGLGTLVGSPPNLIAAK
                     ALNLDFVGWMKLGLPMMLLILPLMLLSLYVILKPNLNERVEIKAESIPWTLHRVIALL
                     IFLATAAAWIFSSKIKTAFGISNPDTVIALSAAVAVVVFGVAQWKEVARNTDWGVLML
                     FGGGISLSTLLKTSGASEALGQQVAATFSGAPAFLVILIVAAFIIFLTEFTSNTASAA
                     LLVPIFSGIAMQMGLPEQVLVFVIGIGASCAFMLPVATPPNAIVFGTGLIKQREMMNV
                     GILLNILCVVLVALWAYAVLM"
     gene            20643..21152
                     /locus_tag="WHR98_000023"
     CDS             20643..21152
                     /locus_tag="WHR98_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEZ2306772.1"
                     /translation="MIILHTNKGDIKIELDFDKAPVTAKNFEQYVKDGFYDGVIFHRV
                     IKGFMIQGGGMDENMNEKETRDPIQNEASNGLPNDKYTIAMARTSDPHSASAQFFINT
                     ADNAFLNFRSKELYGKTVVQDWGYAVFGKVVDGFDVVDAIEGVSTKRHGYHDDVPSEP
                     VVIIKAEAV"
     gene            21315..22697
                     /locus_tag="WHR98_000024"
     CDS             21315..22697
                     /locus_tag="WHR98_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEZ2306773.1"
                     /translation="MANIARDIFKAYDIRGIVGKTLTDDAAYLIGRAIAAKAAEKGMT
                     RIALGRDGRLSGPELMEHIQRGFTDSGIDVLNVGMVATPMLYFAAINECGGSGVMITG
                     SHNPPDYNGFKMMLGGDTLAGEAIQELLAIIEKDGFVAADKQGNVTEKDISGEYHNHI
                     VGHIKLKRPMNIAIDAGNGVGGAFAGKLYKGLGNEVTELFCDVDGNFPNHHPDPSKPK
                     NLQDLIAALKNGDAEIGLAFDGDADRLGVVTKDGNIIYPDRQLMLFAQDVLSRNPKAK
                     VIFDVKSTRLLAPWIKEHGGEPVMEKTGHSFIKSSMKKTGAPVAGEMSGHIFFKERWF
                     GFDDGLYAGARLLEILSASDNPSEVLNNLPQSISTPELNIALPEGSNGHQVIDELAAK
                     AEFEGATEIITIDGLRVEFPDGFGLMRASNTTPILVLRFEADTQEAIERIQNQFKAVI
                     ESNPNLIWPL"
     gene            complement(22717..23472)
                     /locus_tag="WHR98_000025"
     CDS             complement(22717..23472)
                     /locus_tag="WHR98_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEZ2306774.1"
                     /translation="MIKIRNIHKTFGENTILRGIDLDVGKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEDGQIEFDNERPLKIDFSKKPSKHDILALRRKSGMVFQQYNLFPHKTAL
                     ENVMEGPVAVQGKPAAQAREEALKLLEKVGLGDKVDLYPYQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNAMKELAREGWTMVVVTHEIKFALEVATTVVVMDG
                     GVIVEQGSPKELFDHPKHERTRRFLSQIQSTKI"
     gene            complement(23482..24198)
                     /locus_tag="WHR98_000026"
     CDS             complement(23482..24198)
                     /locus_tag="WHR98_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEZ2306775.1"
                     /translation="MFNNFLASLPFMTETRADMIVSAFLPMVKAGFAVSLPLAAASFV
                     IGMMIAVAVALVRIMPAGGIVRKILLKLVEFYISVIRGTPLLVQLVIVFYGLPSVGIY
                     IDPIPAAIIGFSLNVGAYASETIRAAILSVPKGQWEAGFSIGMTYMQTFRRIVAPQAF
                     RVAVPPLSNEFIGLFKNTSLAAVVTVTELFRVAQETANRTYDFLPVYIEAALVYWCFC
                     KVLFLIQARLEKRFDRYVAK"
     gene            complement(24188..25015)
                     /locus_tag="WHR98_000027"
     CDS             complement(24188..25015)
                     /locus_tag="WHR98_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEZ2306776.1"
                     /translation="MMLKKFVLGGIAALVLAACGGSEGGSGASSAPAQSAVSGSLIER
                     INNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMA
                     GLKAGRFDVVANQVGLTSPERQATFDKSDPYSWSGAVLVARNDSNIKSIDDIKGVKTA
                     QSLTSNYGEKAKAAGADLVAVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGV
                     KIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ"
     gene            25300..26208
                     /locus_tag="WHR98_000028"
     CDS             25300..26208
                     /locus_tag="WHR98_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dyp-type peroxidase"
                     /protein_id="HEZ2306777.1"
                     /translation="MNTPQSAIIPDHAQAGIFIEADFAANRLNDIKSACRASLDALSA
                     LKTRFPDDILGLTIAFGSKAWATFGHTDEGSEIKPFSEMGNGLAPSTQHDMSIHIQSF
                     RQNAAYALAQSVLGAFGDSICVASEEHGLRLYQDRGLDGFVDGTENPQGDENVREVAI
                     IPEGKPDAGGSYVLLQKYLHDLKKWDAVPVAEQEASVGRGKETDDEFGHDVRLPDSHL
                     GRVNLKENGVGLKIVRRSLPFGKISGEHGLMFTAYCRTLHNIEAQLLSMFGDTDGKTD
                     LLLRHLSAAVSGGYYYAPSVERLQNL"
     gene            26288..29902
                     /gene="recB"
                     /locus_tag="WHR98_000029"
     CDS             26288..29902
                     /gene="recB"
                     /locus_tag="WHR98_000029"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HEZ2306778.1"
                     /translation="MSAPIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLE
                     QKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLESKEIAKLGDDTLSDGIAAYCAE
                     HHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
                     QAPFDVELTEEDGDRLLVPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSR
                     PYLNFRRPQTDLPQARDAALASWQNICGNLAELKETFWRIHPLLNGNSYRKNSFAELF
                     DALEQKALSPDLPFLEAKLHERLLKLASDKLEAGLKKGKTPDAAVFAELQKLADFRRD
                     LDALEEAEEATIIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAET
                     LARAVAENWETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIY
                     AYLQAAEDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESR
                     LSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQ
                     SGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRA
                     GTLRFVLTSSIFGYNAQQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQT
                     HGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNR
                     AIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAK
                     AQLSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQ
                     DSRETVRRAYACEKDGIAMLKRNWQRVADNAPAGTDFAFTEDAPPPAAYRGNAGQTAE
                     FAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPSETPTAS
                     DGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEIWLPAVAEM
                     AEACRKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRA
                     AAETLDFHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHH
                     HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAALEQIK
                     "
     gene            29941..30300
                     /locus_tag="WHR98_000030"
     CDS             29941..30300
                     /locus_tag="WHR98_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEZ2306779.1"
                     /translation="MNIKHLITAALIASAAFAAQAAPQKPLSAAQTAQHPAVWIDVRS
                     EQEFSEGHLHNAVNIPVDQIVRRIHEAAPDKDTPVNLYCRSGRRAKAALQELKKAGYT
                     NVANHGGYEDLLKKGMK"
     gene            30432..30911
                     /locus_tag="WHR98_000031"
     CDS             30432..30911
                     /locus_tag="WHR98_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HEZ2306780.1"
                     /translation="MKHILPLIAASALCISTASAHPASEPQTQNETAMTTHTLTSKYS
                     FDETVSRLETAIKSKGMDIFAVIDHQEAAHRNGLTMQPAKVIVFGTPKAGTPLMVKDP
                     AFALQLPLRVLVTETDGKVRAAYTDTRALIAGSRIGFDEVANTLANAEKLIQKTVGE"
     gene            complement(31186..32565)
                     /gene="radA"
                     /locus_tag="WHR98_000032"
     CDS             complement(31186..32565)
                     /gene="radA"
                     /locus_tag="WHR98_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEZ2306781.1"
                     /translation="MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPK
                     NARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELDRVLGGGLVDGAVILLGGDPGIG
                     KSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAA
                     LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTK
                     DGAIAGPRVLEHMVDTVLYFEGDQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVS
                     NPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPKRLTVGLEQNRLA
                     MLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVF
                     GEIGLSGEVRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEA
                     IDICRDSRE"
     gene            complement(32754..33818)
                     /locus_tag="WHR98_000033"
     CDS             complement(32754..33818)
                     /locus_tag="WHR98_000033"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEZ2306782.1"
                     /translation="MTLLKNDTFLRALLKQPVEYTPIWMMRQAGRYLPEYKATRAKAG
                     SFLDLCKNTELATEVTIQPLERFDLDAAILFSDILTVPDAMGLGLYFAEGEGPKFKRA
                     LQHEDDIAKLHVPDMEKLQYVFDAVSSIRKALDGRVPLIGFSGSPFTLACYMVEGGGS
                     KEFRTIKTMMYSRPDLLHKILDTNAQAVTAYLNAQIDAGAQAVQIFDTWGGVLSDAAF
                     KEFSLKYIRQIVAGLKRESEGRRVPVIVFAKGGGLWLESMAQIGADALGLDWTCNIGE
                     ARRRVGKQVALQGNFDPFALFGTPESIRTEVARILADYGHGSGHVFNLGHGINQHADP
                     EHAKILVDTVHELSRQYHGG"
     gene            complement(33893..35110)
                     /locus_tag="WHR98_000034"
     CDS             complement(33893..35110)
                     /locus_tag="WHR98_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HEZ2306783.1"
                     /translation="MKTVVWIVVLFAAAVGLALASGIYTGDVYIVLGQTMLRINLHAF
                     VLGSLIAVVVWYFLFKFIIGVLNIPEKMQRFGSARKGRKAALALNKAGLAYFEGRFEK
                     AELEASRVLGNKEAGDNRTLALMLGAHAAGQMENIELRDRYLAEIAKLPEKQQLSRYL
                     LLAESALNRRDYEAAEANLHAAAKMNANLTRLVRLQLRYAFDRGDALQVLAKTEKLSK
                     AGALGKSEMERYQNWAYRRQLADAADAAALKTCLKRIPDSLKNGELSVSVAEKYERLG
                     LYADAVKWVKQHYPHNRRPELLEAFVESVRFLGEREQQKAIDFADAWLKEQPDNALLL
                     MYLGRLAYGRKLWGKAKGYLEASIALKPSISARLVLAKVFDETGEPQKAEAQRNLVLA
                     SVAEENRPSSETC"
     gene            complement(35107..36441)
                     /locus_tag="WHR98_000035"
     CDS             complement(35107..36441)
                     /locus_tag="WHR98_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEZ2306784.1"
                     /translation="MGEPENKSSEPVREIQASKEMPSETSSPRKENETEVHIPAAPFI
                     VKQSGSNALAVCALVLAALGLGTSGFLFVQGQNVLKNQELAFNQKIDKAALGESENAA
                     LLKDNLNRQAAIQSELDRLDGNVKANGEQILEMQKSYRELTKGRADWLVDETETILNL
                     AAQQLVLTGNIQTAVGVLEHIDSRLSRFDQAELLPIKQAVSSDLAELKNRPYVDISGT
                     ALRLDRLETAVSGLPLILDGVLKPGVQVKNEAASASWWQNVWEKSLGTLKGLVEIRRL
                     ENNDAMLISPEQAYFVRENLRLRLLDARTALMQRNSEVYQGDLNNAEAAVRQYFDAKS
                     PATQSWLKELAELKALDVRMTADDGLKNSLNAVRAYRDGTRMTAAENQEAEQAASEPA
                     NENTASEPAAASDVKTIEAPSLPSERKPEQPAKKQPVPEKAGRSPSAKGERA"
     gene            complement(36456..37217)
                     /locus_tag="WHR98_000036"
     CDS             complement(36456..37217)
                     /locus_tag="WHR98_000036"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEZ2306785.1"
                     /translation="METAKPVMLIVRPSGRAAEDVETCLNAGWRAEVLSPVEIEADAA
                     GLELLSEQYARADAVFWVSPTAVETAVPYLNLSDGIKMHIAVGKGSRRALERCLGRTV
                     IAPDDGNDSEAVLRLPVWNSLPEGARVLFVRGHGGRDFLMNALQEKGFRTEVAEVYFR
                     RHKPLNFQNFQTENIAAAYITSAELVQSLFAQVPPQFSRFFKSLLYFTHHPRIAEALK
                     REGVCSVETVPTLEAALSHSSISVSDGMVFPGTSN"
     gene            complement(37238..37657)
                     /locus_tag="WHR98_000037"
     CDS             complement(37238..37657)
                     /locus_tag="WHR98_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306786.1"
                     /translation="MKKMFLSAVLLLSAATRTVWADTVFSCKTDNNKYIEVQKINRNL
                     YEYSFGSAAKKEIAIRNSKADLLGRSDRWQGMGSGRWATMKFQNGEFMYTIWTGFDSV
                     THTESSGVVVERRGKEVARVGCTPKTAQANFNDDDFS"
     gene            complement(37908..38228)
                     /locus_tag="WHR98_000038"
     CDS             complement(37908..38228)
                     /locus_tag="WHR98_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HEZ2306787.1"
                     /translation="MNFQDYLATFSSIDHLGGLDVQDADGKTVHHIPAVQGKLGSLKL
                     YNALAERFDGKLDKEAAEQGLIWFAEHVADARAHPGKHPNIDLLEKVVQSGETLLLKP
                     LAAQ"
     gene            complement(38251..38877)
                     /gene="upp"
                     /locus_tag="WHR98_000039"
     CDS             complement(38251..38877)
                     /gene="upp"
                     /locus_tag="WHR98_000039"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEZ2306788.1"
                     /translation="MNVNVINHPLVRHKLTLMREADCSTYKFRTLAIELARLMAYEAS
                     RDFEIEKYLIDGWCGQIEGDRIKGKTLTVVPILRAGLGMLDGVLDLIPTAKISVVGLQ
                     RDEETLKPVSYFEKFVDSMDERPALIIDPMLATGGSMVATIDLLKAKGCKNIKALVLV
                     AAPEGVKAVNDAHPDVTIYTAALDSHLNENGYIIPGLGDAGDKIFGTR"
     gene            complement(38983..39294)
                     /gene="grxD"
                     /locus_tag="WHR98_000040"
     CDS             complement(38983..39294)
                     /gene="grxD"
                     /locus_tag="WHR98_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HEZ2306789.1"
                     /translation="MASIHDQIKEVVTTHRVVLFMKGTKQFPQCGFSSRAVQILNAAG
                     CTDYVTVNVLENPEVRQGIKEYSDWPTIPQLYVNGEFVGGSDILMEMYEAGELQELLK
                     A"
     gene            complement(39395..39610)
                     /locus_tag="WHR98_000041"
     CDS             complement(39395..39610)
                     /locus_tag="WHR98_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HEZ2306790.1"
                     /translation="MKAIHPYACPRCCRLPANTFRTGMANSASKFCIAKGGRREVKKD
                     ESGGGYALCHLPDSRIVEEWEYFRSQH"
     gene            complement(39636..40415)
                     /locus_tag="WHR98_000042"
     CDS             complement(39636..40415)
                     /locus_tag="WHR98_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEZ2306791.1"
                     /translation="MHIIDSHCHLNFEGLKERLPEVLSNMEANGVGQVLAISVSRESF
                     SEVFAIAEAHEHIYCTIGVHPDSKEAEEFSIAEMVAAAASPKVVGIGETGLDYYWCKG
                     DLSWQHKRFADHIEAANQTGLPVIVHTRDAAADTLSILKECRVNSGVIHCFSEDIGFA
                     RAAMDLGLYISFSGIVTFKNAPLVQEAAKYVPDDRILVETDAPFLAPVPKRGRQNEPA
                     FVRHTAEHIAKLRNQTLEQVAAYTTENFYRLFKKVPDMRTV"
     gene            complement(40420..40770)
                     /locus_tag="WHR98_000043"
     CDS             complement(40420..40770)
                     /locus_tag="WHR98_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilZ"
                     /protein_id="HEZ2306792.1"
                     /translation="MSDGQNIPAKMMSLQLKDMNLLYSSYMPFLEHGGLFVQTNDVFS
                     IGDDILLAVEILNFPKLFLPTKVAWINPARTSSKPKGVGLAFTKHENCLKVKDQIEVE
                     LGNTIGGSRPTFTM"
     gene            complement(40774..41751)
                     /locus_tag="WHR98_000044"
     CDS             complement(40774..41751)
                     /locus_tag="WHR98_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEZ2306793.1"
                     /translation="MIYPWHNEQWRQIAEHWERRPNAWLFAGKKDTGKTTFARFAAKA
                     LLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREII
                     DNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI
                     KSRCRKMVLPAPSHGEALAYLRDRGVAEPEEFLAFHSGAPLFDEADGVRALRIKLLDI
                     LAEPRLLKILDYAALFDKEKLPLDVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQ
                     TVSGFRPRNVFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKKENG"
     gene            complement(41785..42897)
                     /locus_tag="WHR98_000045"
     CDS             complement(41785..42897)
                     /locus_tag="WHR98_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HEZ2306794.1"
                     /translation="MTAKEELFAWLRHMNQNKGSDLFVTTHFPPAMKLDGKITRITDE
                     PLTAEKCMEIAFSIMSAKQAEEFSSTNECNFAISLPDTSRFRVNAMIQRGATALVFRA
                     ITSKIPKFESLNLPPVLKDVALKKRGLVIFVGGTGSGKSTSLASLIDYRNENSFGHII
                     TIEDPIEFVHEHKNCIITQREVGVDTENWMAALKNTLRQAPDVILIGEIRDRETMDYA
                     IAFAETGHLCMATLHANSTNQALDRIINFFPEERREQLLTDLSLNLQAFISQRLVPRD
                     GGKGRVAAVEVLLNSPLISELIHNGNIHEIKEVMKKSTTLGMQTFDQHLYQLYEKGDI
                     SLQEALKNADSAHDLRLAVQLRSRRAQSSSPDLELL"
     gene            43083..43784
                     /locus_tag="WHR98_000046"
     CDS             43083..43784
                     /locus_tag="WHR98_000046"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HEZ2306795.1"
                     /translation="MSLKTVAVIGAMEQEIELLREMMENVKAVSFGKFAAYEGELAGK
                     RMVLALSGIGKVNAAVATAWIIREFAPDCVINTGSAGGLGKGLKVGDVVIGTETAHHD
                     VDVTAFGYVWGQVPQLPAVFVSDDLLVGKAKRAARTFEGAAVEQGLIVSGDRFVHSSE
                     GVAEIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKTA
                     AASSAKMVAEIVKSL"
     gene            43994..45787
                     /gene="lepA"
                     /locus_tag="WHR98_000047"
     CDS             43994..45787
                     /gene="lepA"
                     /locus_tag="WHR98_000047"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEZ2306796.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLADRFIQYCGGLDLREMSTQVLDSM
                     DIEKERGITIKAQTAALNYKARDGQVYQLNLIDTPGHVDFSYEVSRSLSACEGALLVV
                     DASQGVEAQTVANCYTAIDLGVEVVPVLNKIDLPAADPERVEQEIEDIIGIDAVGAVQ
                     CSAKSGIGVEDVLEEIVAKIPAPTGDENAPLQAVIVDSWFDNYVGVVMLIRVKNGTIK
                     LKDKVRFMSTKAETQVEQLGVFTPKSVQKQELKAGEVGFLITGVKELGQAKVGDTVTL
                     VANPATEPLPGFQEVQSQVFAGLYPVESHDYEALRDALEKLQLNDASLKFEPEVSQAL
                     GFGFRCGFLGLLHLEIVQERLEREFDMDLITTAPTVVYEVVLKSGEKIEVENPSKLPD
                     IGSIETILEPIITATILVPQEYVGNVMTLCNQKRGVQVNMQYMGRQVMLTYDLPMNEV
                     VMDFFDKLKSTSRGYASLDYHFKEFQPSDLIKLDIMVNGEKVDALSLIVHRQSAVHRG
                     RELASKMRELIPRQMFDIAVQAAIGSQIIARENVKALRKNVLAKCYGGDITRKKKLLE
                     KQKAGKRRMKQVGNVEIPQSAFLAILQVSDK"
     gene            45930..46949
                     /gene="lepB"
                     /locus_tag="WHR98_000048"
     CDS             45930..46949
                     /gene="lepB"
                     /locus_tag="WHR98_000048"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEZ2306797.1"
                     /translation="MNTMLMSGAAAALLAGIILYFKSDKKRQENGEWSSGLEYAYILT
                     AVGVFAALSLFMSFTAVFLIFVVLCGTAWGVYKYRLKTHPEISESSHFGDYFGSFFPT
                     VLVLFLIRSFIAEPFQIPSSSMRPGLIKGDFILVGKFSYGLRVPVLNNIFIPTGKIER
                     GDVVVFNYPLQPEMTYIKRIVGIPGDVVEYRDKILTVNGKPTSDIPNGTYRYPDDTDP
                     SEIHNTDMFRSGLDGKSFNILKKEGQPAVSLPVLGKYTSDIMSENGYSIEQSGLEHCQ
                     YADDGSGFVCKVPEGRYFAMGDNRDNSADSRYWGFVDDKLVVGKAMFILMNFGDFGRA
                     GTAIR"
BASE COUNT        11052 a        13504 c        12002 g        10487 t
ORIGIN      
        1 aaaacggcag caaaaatgcc gtctgaaacc aattagggct tcagacggca tttttactgc
       61 aaaaccttat gcgaacggat gatgcagcac aatcgtttct tcgcggtcgg ggccggtgga
      121 gacgatggcg accggcgcac cgcagacttc ttcaatccgt ttcaaatatg ctttggcatt
      181 ggcaggtaat gcgtcgtagc ttttcacgcc gaaagtggat tcgctccaac cgggcatggt
      241 ttcgtaaatc ggcttgcagg cttctaccgc atcagagccg caaggcagga tgtcggtttt
      301 gccgccgtcg ggcaattcgt agccgacgca gatattgatg gtttcaacgc cgtccattac
      361 atcgagtttg gtaatacaca taccggaaat gccgttgatt tggatggagc gtttcagggc
      421 ggcggcatca aaccagccgc agcggcgtgc gcgtccggtt accgaaccga attcgtgtcc
      481 gcgttctgcc aaacctacgc ctacttcgtc gaacaattcg gtcgggaacg ggcccgaacc
      541 gacacgcgtg gtataggctt tgacgatgcc caaaacataa tccagcattt gaggacctac
      601 gcccgcgcct gcggaagcgg ctcccgccag acagttggac gaggtaacga agggataagt
      661 gccgtagtcg atgtccaaca acgcaccttg cgcgccttca aacagcagtt tttcgccgtt
      721 tttgtttttc tcgttcaaca cgcgggacac gtcggtaatc atcggcgcaa tgcgcggcgc
      781 gactttttcg ataaccgcca tcacgtcttc cgctttaacc ggctcggcat tgtgcagatg
      841 ttgcagttgg acattgtaat aggcaaggac ggcatccagt ttttcacgca gtttttcagg
      901 atgcagcaaa tcggcggcgc gaatggcgcg gcgtgccact ttgtcttcgt aggcagggcc
      961 gatgccgcgg ccggtcgtgc cgattttgcc tttgccgcgc gatgcttcgc gggcttggtc
     1021 gagcgcgatg tgataaggca ggatcagcgg gcaggtcggc gcgattttca gacggccttc
     1081 gacgtttttc acgcctgccg cgttcaactc gtcgatttcg cccaacaggg cttcggggga
     1141 aacgacaacg cccgaaccga taaagcagtc caggttttca tgcagaatgc cgctcggaat
     1201 caggcgcaaa atggttttct tgccgccgac gaccaaagtg tgtccggcat tgtggccgcc
     1261 ttggaaacgc accacgccgc cgacttcttc cgccagccag tcaacgattt tacctttacc
     1321 ctcgtcgccc cactgtgcgc cgattactac aacattttta gccatagcca tataacctat
     1381 cgatatttaa aattattgtg ggaatcccca aaccggtgcg gctttgcagc ctgccacggt
     1441 ttgcctttca tccgccatga acgggtattt agcgtttcac gacctgccaa acgccgtccg
     1501 tctttttcag acggcctgca agctcttccg aaacattgtg tccgataccg taatcgatta
     1561 cgacacactg cccttgttca cgcaaggctt cgaccgcttc gtgcgccgct tcggcatctt
     1621 ccgcatcgac caacacggcg ggctgccgtt cgatggcggg caaacgcccg ataaagctgc
     1681 gcaagtcgaa actgaatccc gttgccgggc gcgccctgcc gaaatatccg cccaatccgt
     1741 cataacgccc gccgcgcgcg accgcgtcgt ggaaatcggc ggcataggcg gcatacagca
     1801 agcccgtgtg gtaattgtcg acacgcagct cggacaagtc gatatggatt tcacaatcgg
     1861 ggaatgcgtc gcacaccgcc tgcaattcgc ccaacgcgcc gccgaccgcc gacaaatccg
     1921 gcaaccgtcc gcgcgcgtcg gacaacactt cacgcccgcc gtacaggcgc ggcaacagcg
     1981 agaatgcttt tgcccacatg ccgtccagct tccaagcctt gacctgcgct tcgaccgccc
     2041 cggtatcttt atcctgcatc aaggcaagca gcgttgcgga ctgccccgca tccaaatgtg
     2101 ccgcatcgga caaggcgcga aatatgccga tatgccccag cgaaagcagc actttgccca
     2161 tatcggcaat tttcatgctt ttcagcataa ggtctatcag ctcgatgtcg ccacggatgt
     2221 cggcaaaacc gtacatttcc gcccctgcct gcaagggttc gcgcatattc agcagaccgt
     2281 cggactgcgc gtgcaacacc ggaccggcat aacacaaccg gttaatccct tggttggcgg
     2341 ataaaagatg ggcatcgata cgcgccacct gcggcgtgat gtcggcgcgt atgcccaact
     2401 gcctgccgct gagcctgtcc gttaccaaaa tggttttcag ggaaagcccc gcatcgatat
     2461 gcgtcagcag ggaatgtgcg tactccatca gcggaggctg taccagttca taaccgtgta
     2521 cgcggaacag tgccaacaac tgctccctcg cgctttcaag ctgccgcgcg ttcgtgggca
     2581 gtacgtcggc gatatgttcc ggaagctgcc atgtctgcat gagaatctgc cttctatttt
     2641 atcatgtaaa tacaaaaggc tgcccgatcc gcaatcagac ggcatctttg ccgcaacgca
     2701 tcacgccgct gtcaaaacgg cgatgcttcc ttccgattca gaatccgaac agcccctgtc
     2761 cgacggctca atgccgtcaa gtcgttaaaa ccaaacttta ccataaaata cacacaatct
     2821 gaatatactt ttataccctg tatccgccgt ctgacggcac ggcatttttt tactatataa
     2881 tgtgcaccat tatttctcat cacttcctgc tgccgttttc tgcttcagac ggcatttttg
     2941 ttgattgaac acttatgctg ctcgacctca accgcttttc cttttccgtc ttcctgaaag
     3001 aagtccgcct gctgaccgct cttgccctgc ccatgctgtt ggcgcaggtc gcgcaggtgg
     3061 gcatcggttt tatcgatact gtgatggcgg gtggtgcggg caaggaagac ttggcggcgg
     3121 tggctttggg cagcagcgcg tttgccacgg tttatattac ctttatgggc attatggcgg
     3181 cgctgaaccc gatgattgcc cagctttacg gcgcgggtaa aaccgacgaa gtgggcgaaa
     3241 cgggacggca ggggatttgg ttcgggctgt ttttgggcgt gttcggcatg gtcttgatgt
     3301 gggcggcgat tacgccgttc cgcaactggc tgaccttgag cgattatgtg gaaggcacaa
     3361 tggcgcagta tatgctgttc accagcttgg cgatgccggc ggcaatggta caccgcgcac
     3421 tgcacgccta cgcctccagc ctgaaccgcc cgcgcctgat tatgttggtc agctttgcgg
     3481 cgtttgtgtt gaacgtgccg ctgaactata ttttcgttta cggcaaattc ggtatgcccg
     3541 ctttgggcgg cgcaggctgc ggactggcga cgatggcggt gttttggttc agcgcgctgg
     3601 cattgtggat ttatatcgcc aaggaaaatt tcttccgccc attcggactg acggcgaaat
     3661 tcggcaaacc ggattgggcg gtgttcaaac agatttggaa aatcggcgca cccatcgggc
     3721 tgtcttattt tttggaagcc agcgcgtttt cgtttatcgt gtttttgatt gcgcctttcg
     3781 gcgaggatta tgtggcggcg cagcaggtcg gcatcagttt gtcggggatt ctctatatga
     3841 ttccgcaaag cgtcggctcg gcggggacgg tgcgcatcgg cttttcgctt gggcggcgcg
     3901 aattttcgcg ggcgcgttat atttcgggcg tgtcactggt gttaggatgg atgctcgccg
     3961 tgattaccgt gctttccttg gtattattcc gttcgccgct ggtaagtatg tacaacaatg
     4021 atccggcggt tttaagcatc gccgccaccg tcttactgtt cgccggcttg ttccaaccgg
     4081 cagacttcac ccaatgtatc gcctcctacg ccttgcgcgg ctacaaagtt acaaaggtgc
     4141 cgatgttcat ccacgccgcc gccttttggg gctgcggtct gctgccgggc tacctgctcg
     4201 cctaccgttt cgatatgggc atttacggct tctggacggc attgattgcc tcgctcacca
     4261 tcgccgccat cgccttggtg tggtgcttgg aattgtgcag cagggagatg gtcagatcgc
     4321 ataaggtcgt ctgaaaactc cgccgattaa aaatatagtg gattaacaaa aaccagtacg
     4381 gcgttacctc gccttgccgt actatttgta ctgtctgcgg cttcgttgcc ttgtcctgat
     4441 ttttgttaat ccactataga aacgatgggc tgaagcccgc cactggcaat actcatttta
     4501 aagttcaaac ccatgcaacc catccgatac cgaaccgacc ttacccccta caacactttc
     4561 ggcctgcgcg cccaagcccg agcctttatt gcgcttgaac acgccgacgg gttgcgcgac
     4621 atcgtccgac tgcccgagtt cgaccgcgat actgttttat ggctgggcgg cggcagcaat
     4681 atcgttttga tgcaggatta cgccggactg gtcgtccata tggaaaacaa aggcatacgc
     4741 gagattgcgc gttcagacgg cattgttcgc atcgaagcgc aggcgggcga aatctggcac
     4801 gattttgtcc tgcacaccgt cgcgctgggt ttgagcggtt tggaaaacct gagcctgatt
     4861 ccgggtacgg tcggcgcgtc gcccgtgcag aacatcggcg catacggcgt agaggcgaaa
     4921 gatgtgattc acagcgtgcg ctgcttcgat ttggatacgg aaacctttgt aaccctttcc
     4981 aatgccgact gccgcttcgc ctaccgcgaa agcctgttca agcaggaagg caaagggcgt
     5041 tatgtgattg tttcggtcgt atttgcatta aaaacgcatt ttgtgccgaa cttgggctac
     5101 ggcgatttgg cggcgaaggt tgccgaattg agtgcaggca gggaggcgac ggcaaaagac
     5161 gtttccgatg cagtgtgtgc aatccgcaac agtaaacttc ctaatcctaa cgtgcttggc
     5221 aatgtcggca gtttctttaa aaatcctgtc atcggcgcgg aaaaagctgc cgccctgttg
     5281 gagcagcatc ccgatatgcc gcattatccg cagcccgacg gttcggtcaa actcgccgcc
     5341 ggctggctga tcgaccaatg tcgtctgaaa ggctttcaaa tcggcggcgc ggcggtacat
     5401 ggcaggcagg ctttggtctt agtgaacaaa aacaacgcct cggcaaacga tgtccggcaa
     5461 ttggcgcaac acatcaaatt tacagtattt gctcggtttc aggtagaatt gcacgccgaa
     5521 cccaattggc tgcctgcttc gttcagcctg taaatccaag gagtatgccc gtgacccgcc
     5581 tcgccaaaat caatacttac acacgcatca tcgacgccag ccttgcgctt ttcaacgagg
     5641 aaggcgagcg caacatcagc accaaccata ttgccgccca cttgggcatc agtccgggca
     5701 acctctatta ccacttccgc aacaaagacg aaatcatcgt ccaactgttc aaacgttaca
     5761 gcgaagccct gctggaatac ctcaacgaag ccgtgttgcc gtctgatgtg gaagactcca
     5821 tcaactatat ggcgggcatt tacgacgtga tgtgggaata ccgcttccta ttcagcgacg
     5881 tgaacaccct gcttgcacgc agtgccgaac tattgggcga acacaatacc tttacccaag
     5941 ccaaagtctc cccgctcttg gtcaacctgc tgacccagct caacggtctg aacatcatcc
     6001 aagccgacca aaccgctatg aacgacctcg ccgtcaatat gtggatggtc acgaaatact
     6061 ggttcgactt cgacagctcc ctgcgcggcc gcaccaagct gaccgaagac tccaaagcac
     6121 gcggcatccg ccgcacctta agcctccttc gtccttatct tttgcccgaa caccgcgaga
     6181 aatacgaccg gaaaatcggc aacggcaacc cgtaaaccca cagcgtccga atcagccttc
     6241 agacggcact tacccgacgg tatcagcgaa tgcgcgcagt ccccccgccc catatctcca
     6301 tcacaggcct aggttacctc ggcctgccgc tggcacaaaa gttttaccaa cacggcagcc
     6361 gcgtcgccgc cataaaacgc agcctgactt cggacgacat caacctgccc atacatctcg
     6421 acaccttcga cctcggcagc accgatgcct ttcagacggc attgtggcgg caccacgccg
     6481 acaaacccgt ctggttcttc ctgctaccgc cctcctcgct gacgcattac gccgacaccg
     6541 tcaaacaatg ggcagaactt gcccgggcgt gcaacgtgca acacctgatt ttcacaagca
     6601 gcaccagcgt ttacggcgat acagcgcgcg aatgcgacga aatcgcccta cccgatccgc
     6661 aaaccgagtc cgcccgccaa atcctcgccg ccgaacaaca cctgctcgac agcggcgttc
     6721 cgaacatcga catcctgcgg ctgggcgggc tttattgcgc cgaacgccat cccgtcagcc
     6781 gccttgttca aaagcaaaac atcccgggtg gcaaccgccc catcaacatc gtccaccgta
     6841 atatcgccgt cgaaagcctg tttcagacgg catttaaccc cggcggcagg cggctgaaaa
     6901 acattatcga accgcgccac ccgacacgac gcgaattcta cacggaagaa gccgccaaac
     6961 tcggtttgcc ggctcccgat ttcgcacccg acgacagcgt gggcaaaatc atccgtaccg
     7021 tttgcgataa cggcttaagc ctgtaaaata accggcaaca gcaacaaacc ggcattctgc
     7081 ccgcagtcag gaaataaaca tgtccgccct attccccatc atcaaccacc tgattcagca
     7141 aaaccccgac agccgctcgg agcttgccgc atttgccgac aaaacactgg cgctgaacat
     7201 tgccggattg aaactgaccg gacgtatcac ggaagaagga tttctatcgg caagcaacgg
     7261 ttttgcagat acagaaatca ccttccgcaa cagcgcagta caaaaaatcc tgcaaggagg
     7321 cgagccgggg gtgggagaca tcagccttga aggagacctc atactcggca tggcggtatt
     7381 acccctgctc ggcagcctgc gttaccgtgc atcagacgac ttggcacgga ttttcggcac
     7441 gcagctcggc aacagcatcg gcagccgtgc cgccgatatc ggacacggta tcaaacaaat
     7501 cggcagaagc atagccgaac aaatcagtga attttcacgc gaacccgaat cccccgttat
     7561 cgacgccgcc accctgtccg cctggatgga agaagtggac aaactgcgtg acgacgttgc
     7621 ccgcctcaac gaacgcctcg acaggctcga acgcgacatt tggatagact aaccttcaga
     7681 cggcatccga catgaacagc ccttttcaca acatcggcgt cgtaacccgc cccaacacgc
     7741 ccgacatcca agatactgca cacacactga ttaccttttt gaagcagcac ggctttaccg
     7801 tttatctcga cgaagtcggc gtaagggaat gctgcatcta tacccaagac accgtcggct
     7861 gccatatcgt caacaagacc gaactggggc aatactgcga cctggtcgcc gttttaggcg
     7921 gagacggcac ctttctctcc gtcgcccgcg aaatcgcccc gcgcgccgtt ccgattatcg
     7981 gcatcaacca agggcatttg ggcttcctga cccaaattcc ccgcgaatat atgacggaca
     8041 agctattgcc cgttttagaa gggaaatacc ttgccgaaga gcgcatcctg attgaggccg
     8101 cactcatccg cgaaggcaaa accgccgaac gcgccatcgc cctcaacgat gccgtcctct
     8161 cccgtggcgg cgccggacag atgattgagt ttgaagtctt cgtcaatcgg gaattcgtct
     8221 atacccagcg ttcggacggg ctgattgtct ccacccccac cggatcgacc gcctattcgc
     8281 ttgccgccgg cggccccatc atgcaggcag gtttgcacgc cttcacgctc gtccccatct
     8341 gcccgcaatc catgaccaac cgccccatcg ccattccaga cacatccgaa atcgaaatcc
     8401 tcgttaccca aggcggcgac gcgcgcgtcc atttcgacgg tcaaacccat atcgacgtgc
     8461 aaaacctcga ccgcatcacc atccgccgct accgcaaccc cttacgcatc ctacacccga
     8521 ccgactacca atatttcaaa accctgcgcc aaaaactgca ctggggcgaa caattggtct
     8581 gaaccgaccc ttaccggaaa acacctatga atccaaaaac tccccccgac catacagaag
     8641 atgccgtgcg cctctccaaa cgcatggcgc aactggggct ttgttcacgc cgcgaagccg
     8701 acggctatat cgaacagggc tgggtaacgg tcaacggcaa aaccgccgta ctcggtcaga
     8761 aagtttcacc ggcagaccgt atcgaactga acaagaaagc ccacgaacag caggcggcac
     8821 gcattaccat cctgctgaac aaacccgtcg gctatgtcag cgcacaagcg gaaaaaggct
     8881 ataaatccgc cgccgaactg attacccctg aaaaccgctg ggaaggcgac accggccgca
     8941 tccgtttcga tccgaaacac aaaatcggtc ttgcccccgc cggcaggctc gatatcgatt
     9001 cagtcggatt gctggtgttg acgcaggacg gccgtatcgc caagcagctt atcggcgaaa
     9061 acagcggcag tgaaaaagaa tatttggtgc gcgtgcgcgg caaattggac gaaaaaggac
     9121 ttgccttact gaatcacgga ttgagtttgg acggtgaaaa actgcgtccc gcccaagtag
     9181 aatggcaaaa cgaagaccaa ctgcgtttcg tattgaaaca aggtaaaaag cggcaaatcc
     9241 gccgtatgtg cgaactggtc ggactgcgcg tcgtcgggct gaaacgcatc cgcatgggta
     9301 aggtcaagct cggcaggctg ccgcccggca aatggcgtta tcttgctccc ggcgaatcgt
     9361 tttaaataag cattaaaaaa tgccgtctga acgtccttac gttttcagac ggcattgcct
     9421 tatgcccaaa taacggtttc ttccaagggc ctgcgcgctt tcgtggcgat ttcctgaacg
     9481 cggtagccga atgtcgcggc aacggacacg ccccattctg ccgcatcgaa caaaccgaac
     9541 tgcccggaca atacgcgttc catctcggca tagttgaaac cttccaccgg gcaggaatcg
     9601 atacctgcca tcgccgcacc cgtcatcatg ttgcccaacg cgatataggt ctggcgacaa
     9661 caccagtcaa acaaggcgcg cgaatcgtcc aaaatcttga tgtcgtcggc ttgaaacgcc
     9721 tgatacctcg ccaaagattt tgccatggca tccggttcgg taacgccgcg ccgtttgagg
     9781 ctttccaaca taaacgggct gtcgaagcgg gcatttttct ttgccaaaaa caccaccaaa
     9841 tgactggcgg tatccaaagc atccgccata ccccaagaaa acggcttgat tgcctgtcgg
     9901 atttcggggt tttgaaccac aacaaactgc caaggctccg aaccgaccga actgggcgac
     9961 aaacgcccga gttctaaaat aaactgaaaa tcctcggcac tgattttacg tgccgcatcg
    10021 taatgccggc atgatttgcg gtttttaaat gcggatagaa cctgctcttt gcttaatact
    10081 gccatcgcac atcctttcat tacttgtatt gcaaattgat ttcaaaccga tacggcactg
    10141 ccgcaccata caatccgtcc tcgccatcaa gcttcatccg gactttaccc atctctctac
    10201 ggctgggaaa acaaagcggc ggcagactcg ggaataacgc cccaatgcct ttcagacggc
    10261 atttgggcat cattgcaaac gcgcctacgg gtaggcgata taggcataag ccgaatggtt
    10321 gtggatagac tcgaaattct cgctctcgac aacgaaactc ttgatgcgtt tgtcggcgat
    10381 cagcgaagta gcgacatcgc gcaccatatc ttccacgaat ttcgggtttt cgtaggcttt
    10441 ttcggtaacg tatttttcat cggggcgttt gagcaggccg tagagttggc agcttgcctg
    10501 tgcctccaca taatcgatga cttcctcaat accgacttcg gcatcggcag tcaggctgac
    10561 ggtaacgtgc gaacgctgat tatgcgcgcc gtattgggaa atttctttgg aacacgggca
    10621 aagcgaggtt acgggaatca tgaccttcat actgtggccg tatgcaccgt ctttcatttc
    10681 gcccgtgagg cagacatcat aatccagtaa agactgaata ccggaaaccg gggcggtttt
    10741 cttgcggaaa aacgggaagg aaacgcggat ttttccggag tgggaatcca aaagcgcgat
    10801 catttcggca gtcagcctgt gcaattgtgc aaaatccaag gcttcggttt gtttttccat
    10861 cagggcgaca aagcgcgaca tatgcgtgcc tttttggtcg gcaggcagga aaaccgtcat
    10921 ggtcaggtgg gcgacggtgg attgttcgcc ttctttgctt ttaagggaga ttggaaagcg
    10981 caggtctttg atgccgacct gattaatcgg cagattgcgc aaatctcggc tggattgcac
    11041 gtctgcaata gtgttcatga gttgtttttc cttaatattc atgtaattgt tgagatgtgt
    11101 gcatggtatg gcgtttccgc cggggaatat accgtcaatc tgcaaatgcg agattatatc
    11161 actcgctttt agcagctgca ttgattgttt ctatttttca gatagtgata aaatcttcga
    11221 ttattcacat ctacataggc agagaccaaa tgaaattcgc cacgaaagcc attcattcca
    11281 gctacgattg cgacgaacac aaccgcgcgc tgatgccgcc gatttatcaa aacagtatgt
    11341 ttgcgttgca cgagattggc gaaaatgtgc cttaccgtta ttcgcgcctg agcaacccga
    11401 cccgtcagat tttagaagac accgttgccg atttggaaca cggtgcggca ggttttgcgt
    11461 tttccagcgg tatggcggga attgatgccg tatggcgcac tttcctgcgc ccgggcgata
    11521 ccattgtcgc cgtcgccgat atttacggcg gcgcttatga tttattggtc gatgtttatc
    11581 aaaaatgggg ggtgaacgtt gtttttgccg atttaggcaa tccggataat ttggacgaac
    11641 tgcttaaagc gcacaaggtc aaactggttt ggctggaaac gccgtccaat ccacttttac
    11701 gcttggtaga catcaaagtc cttgccgcaa aagccaaagc agccggtgcg ctggtcggta
    11761 tcgacaacac ttttgccacg ccgtatctgc aacagccgtt ggatatgggt tgcgattttg
    11821 tattccattc cgctaccaaa tatttgtgcg gccattccga cgtgttgatg ggcatcgtcg
    11881 ttgccaaaac caaagaactg gcgcagcctt tgcacgatat gatggtgcat accggcgcgg
    11941 ttgccggccc gatggactgc tggctggtgt tgcgcggcat caaaacactg gctctgcgca
    12001 tgaacgccca ttaccaaaac gcactcgaaa tcgcgcgccg tttggaagcc catcctgcca
    12061 ttgaaaaagt gttccatccc ggcctgccgt ctcacgaaca ttacgaactg gcgaaaacac
    12121 aaatgcccaa aggcataggc ggcgtggtta cggtttatct caaaaacgac acgcgtgaag
    12181 cggcaaacag cgtgattaaa aacatgaaac tggtcaaaat ggcttccagc ctcggcggcg
    12241 tggaaagttt ggtcaaccat tgctattccc agtcccacag cggcgtgccg cataatgtga
    12301 aaatggaaat gggcatcagg gtcggcctgc tgcgtttctc tgtcggtatc gaagatgtag
    12361 atgatatttg gaatgatatt tccgccgcac tcgatacaac tttgtaaacc gtaaaaatgc
    12421 cgtctgaaac catggtttca gacggcattt caatattgcg aatcaaatat caacgcttca
    12481 gcatctttgc cgcctcaatg gcgtaatagg tcaaaatccc atccgcaccc gcacgtttga
    12541 atgccagcag gctttccaaa accactttgc cgccgtccag ccagccgttg gcaaccgccg
    12601 cctgcagcat cgcgtattct cccgaaacct gataggcata agtcggcacg ccgaactcgt
    12661 ccttcacgcg gcggacaacg tccaaatacg gcaaaccggg cttgaccatc accatatccg
    12721 caccttcctg aatgtccaac gccacttcgt gcaacgcctc atcggtattt gccggatcca
    12781 tctggtaggt ctttttatct gccttgccca aattgcccga actgcctacc gcatcacgga
    12841 aagggccgta aaatgcagaa gcatatttgg cggaatacgc cataatccgc gtatggatat
    12901 gcccggcatc ctccaacgcc tcgcgaatcg caccgatacg cccatccatc atatcggaag
    12961 gagcaacgac ctgtgcgcct gcctctgcat gacacaaagc ctgcttgacc aaaacctcta
    13021 cggtttcatc gttcatcaca taaccgtttt cgtccgtcag cccgtcctga ccgtgcaccg
    13081 tataaggatc gagcgcgaca tccgtcataa tgcccagttc gggaaacctc tcgcgcaagg
    13141 cgcggacagt tgacggcacg agtccttcgg gattgtacgc ctcctgcgca cgctcggttt
    13201 tgtttgccgt aaccacgggg aacagtgcca acatcggaat accgagcttt accgcctctt
    13261 ccgccgtaaa cagcagcctg tccaaacttt gacgcttcac acccggcata gaaggcacat
    13321 cctcctcgcg cgccgacccc tccaatacga acaccggata aatcaaatca tcggcggtca
    13381 gcgtgtgttc gcgcatcagg cggcgtgaaa aatcgtccct gcgcatacgg cgcatacgcg
    13441 aagccggaac attgcggtaa ggaaactgca taagccctcc aatcatcctg tcaacaattc
    13501 aaaccatacg gaagccgccg caacttgcag acagcatcgg gcggcaatca aaatccgttt
    13561 tcaccggaaa gggtttcggc ccgccgaaat gccgcgccga aggacggcgt cccgcccatt
    13621 aaagaacaat agcaaaacaa cagcttcagg ctgtcagcct tcgatattct tacgccacaa
    13681 taccaaaagt ttcccgatat gctgaacagg ttgcgcgtca accgcctcac ataaggcagt
    13741 gcagatttcg atacgttcgg cacggtcgtc gccgaatacg cgcactttaa tcagctcatg
    13801 cgccgtcaat gccgcatcgg tttccttgat gaccgcgtcc gtcagaccct gctgaccgac
    13861 catcacaaca ggatggagat ggtgcgcgcg cgctttcagt tccaaaattt ctttggtgtt
    13921 caatttggta tccgtcattt tcctactgct tgaataaaaa gaataatgcg gcattgtacg
    13981 cgatttggca cgacatcggc aaaattaacg tacaatacgc ggtttccatt ccgacccgcg
    14041 aaccactatg gctgtacgtt ccaaatcctc aaaagcgtgg ctgcacgaac acgtcaacga
    14101 ccactacgtc catatggcgc aaaaagacgg ctaccgcgcc cgtgccgcat acaaactttt
    14161 ggaaatcaac gaaaaagaca aattaatcaa acccggcacg gtacttgccg acttgggcag
    14221 cgcaccggga agctggtcgc aggttgccgc caagctgacg ggtacttccg gagcagtttt
    14281 cgccttggac atcctaccca tggaagccat agggggcgtc tccttcattc agggcgactt
    14341 ccgcgagaac gacgtactgg cacaattcga aaccttgttg gacaaccgcc cgctcgacct
    14401 tgtaatttgc gatatggcgc ccaatatgtc gggaaacgcc gtaagcgatc aggcacgcag
    14461 cttttatctg tgcgaactgg ctttagactt cgcctcgcaa cacctgaaaa ccggcggcag
    14521 ctttttggtc aaagtctttc agggtgcagg ctatcaggaa tacatggcag ccatgcgcga
    14581 aattttcggc acggtgcaga cgcgcaaacc cgaagcctcg cgcaatcgct ccagtgagat
    14641 ttatttattg ggcaaaaata aacgctgaca atacagacgg cgtgctttac aatcatttcc
    14701 gttttacacc tcaattatgg agccttgcta agtggggaac acctttaaat caatccttgt
    14761 ctgggtcgcc ttgggtatcg gcctgatggc tgcgttcaac gctttagacg gtaaaaaaga
    14821 agacaacggg caaatcgaat attctcagtt catccaacag gtcaacaacg gcgaagtatc
    14881 cggcgtcaac atcgaaggat ccgtcgtcag cggctacctg attaagggcg agcgcaccga
    14941 caaaagcacc ttcttcacca acgcgccttt ggacgacaac ctgattaaaa cactgctcga
    15001 caaaaacgtc cgtgtaaaag taacgccgga agaaaaaccg agcgcgctgg ctgccctgtt
    15061 ttacagcctg ctgcccgtcc tgctgctgat tggcgcgtgg ttctacttta tgcgtatgca
    15121 gacgggcggc ggcggaaaag gcggcgcatt ctcattcggc aaaagccgcg cccgcctact
    15181 ggacaaagat gccaacaaag ttacctttgc cgatgtcgcc ggctgcgacg aagccaaaga
    15241 agaagtgcag gaaatcgtcg attacctcaa agcgccgaac cgctatcaaa gcctgggcgg
    15301 gcgcgtgccg cgcggcatcc tgctggcggg cagcccgggt acgggtaaga cgcttttggc
    15361 gaaagcgatt gcaggcgaag ccggcgtgcc gttcttcagc atttcaggtt ccgactttgt
    15421 cgaaatgttc gtcggtgtcg gtgcaagccg cgtccgcgat atgttcgagc aggcgaagaa
    15481 aaacgccccc tgcatcatct ttatcgacga gattgacgca gtcggccgcc aacgcggcgc
    15541 aggtttgggc ggcggcaatg atgagcgcga gcaaacatta aaccaattgt tggttgaaat
    15601 ggacggtttt gagagcaatc agactgtaat tgtgattgcg gcaaccaacc gccccgacgt
    15661 actcgatcct gcgctgcaac gccccggccg tttcgaccgc caagtggttg tccccctgcc
    15721 ggacatccgg gggcgcgaac agattttgaa cgtccattct aaaaaagtgc ctttggacga
    15781 atctgtggat ttattgtccc tcgcgcgcgg cacgccgggt ttttccggtg cggatttggc
    15841 aaacctagtt aacgaagccg ccctgtttgc cggccgccgc aacaaagtca aagtcgatca
    15901 aagcgatttt gaagacgcaa aagacaaaat ctatatgggt ccggaacgcc gcagtatggt
    15961 gatgcacgaa gacgaaaaac gtgcgacggc gtatcacgaa tccggacacg cgattgttgc
    16021 cgaaagcctg ccctttaccg accccgtcca caaagtaacc attatgccgc gcggacgtgc
    16081 gctgggtctg acttggcagc ttccggagcg cgaccgcatc agtatgtata aagatcagat
    16141 gttgagccag ctctccatcc tgttcggcgg acggattgcc gaagacatct tcgtcggacg
    16201 catctccacc ggcgcatcaa acgactttga acgcgcaacc caaatggcgc gcgaaatggt
    16261 aacgcgctac ggcatgagcg acaaaatggg cgtgatggtt tatgcggaaa acgaaggcga
    16321 agtcttcttg ggacgcagcg taacccgttc gcaaaacatt tccgagaaaa cccagcagga
    16381 catcgacgcg gaaatccgcc ggattttgga cgagcaatat caggttgcct acaaaatcct
    16441 cgatgaaaac cgcgacaaga tggaaacgat gtgcaaagcc ctgatggaat gggaaaccat
    16501 cgaccgcgat caggtactgg aaatcatggc gggcaaacaa cccagtccgc ccaaagatta
    16561 cagccacaac ctgcgcgaga atgcggacgc ggcggaagat aacgcgccgc acgctccgac
    16621 tcgggaagaa accgaagcac ctgccccggc agacaccgct tcgtcagagt ccgagcagcg
    16681 gcctgaaaac aaggcttaac ttcccgaaca aacggcagcc cgcaagctgc cgttttccca
    16741 tcccgttttc agacggcatt ttccactcaa tgccgtctga aacgccaaag ccgtatcggt
    16801 ttttacgaat ctgcgatatg gcggtttaaa ttgaaatcag acgaggcaag gctgtaccgg
    16861 tttaaaatta aaccgctata atactgccct tcgaatacac gcccgcattg gtgatgcccg
    16921 tgaaaaaagt tgaaaaaaac atcttggtgc tgcacggcgc ggacaaaatg ttcgagctgg
    16981 tcgataaggt tgaggattac ccgaactttc tgccgtggta cagcaaaacc gaggtcatcg
    17041 ggcgcaacgg caacgaactg aaggcgcggc tgtttatgga ctatatgcac gttcgccaat
    17101 cattcgccac gcacaaccgc aacattccgg gcagggaaat ccgtatggaa ctgctcgagg
    17161 gtccgttcaa aaccttacgt ggaacgtgga aatttatcga tttgggcgac gatatgtgca
    17221 aaatcgaatt caatttggaa tacgattttt ccaatgccgt tttgtccgcc ttaatttccc
    17281 ccgtcttcaa ccacctttcc gccacgctgg tcgaagcgtt cgtcaaagag gcagaccgcc
    17341 gttatgcttg aaattgagat tgtgtacggg ctgcccgacc gacaggtttt gaaaaccatg
    17401 cagcttgccg agggaacaac cgtccgcgcc gccgcactgc aaagcggttt ggacggcata
    17461 tttgaagatt taaacctgca ttccgcgcct ttgggcattt tcggcaaagc cgtcaaagac
    17521 gacacgcccc tgcgcgacgg cgaccgcatc gaagtgtacc gcccgctgtt gatcgatccc
    17581 aaagaagcgc gccgcaaacg cgttcaaaat caagaagaat aaccatgccg tctgaagcct
    17641 tcagacagca ttcgacagaa acacggaaaa tatcatgtca aacacaatca aaatgcttgt
    17701 cggattgggc aaccccggca aagaatacga acaaacccga cacaatgcgg gtttttggtt
    17761 cctcgacgaa ctggcgtgga aatggaaggc ttcatttaaa gaagaaaaaa aattcttcgg
    17821 cgaagtcgcc cgtgccgccc tgcccgacgg cgacgtttgg ctgctcaaac ctgccacgtt
    17881 catgaaccgt tccggacagg cagttgccgc ccttgcgcag ttttataaaa tcaaacccga
    17941 agaaatcctc gtcgtccacg acgaactcga cattccctgc ggacggatca aattcaaact
    18001 cggcggcggc aacggcggac acaacggctt gaaagacatt caggcacggc tcggcacggc
    18061 cgactattac cgcctgcgcc tcggtatcga ccacccgggc gaccgcaacc tcgtcgtcgg
    18121 ctatgtcctg aacaaaccca gtgcggaaca ccgccaacag attgatgatg ccatcgccaa
    18181 atccctgcag gccatacccg acatcatttc cggcaaatgg gaagaagcaa cacgtttcct
    18241 gcacagcaaa tgacccgatg ccgtctgaag ccctttcaga cggcattccc gccatcagcg
    18301 agaacccgca ctatgtccga actcaaccgg ctcatccaaa ccgaatccgt tgccgtcatt
    18361 gaagaaactt taaattttct gctctacgaa tgcagcatag acgatgcccc ctccgccgaa
    18421 gaaattgccg tttggcgcga tatgctggcc gcacgcggcg gaaaattcct gcgcctatcc
    18481 aaactatgcc ggacatggct tgaagaggaa caagcatgaa tctgccacgc aaccgcttta
    18541 tcctgctctc ggcattgtgg tttgccggcg gcatctattc gctgctcttc aaagctgccg
    18601 acaccgcgcc gccgccgttt cctcatttcg acaaagcagc acaccttgcc ctgtttttcg
    18661 cacaaatctg gcttctgacc aaagcattca gaaccgacaa ccgccccatc ccctatcgca
    18721 gcctgatggt ctttgccctc tgtttcgccc tcttcagcga atgcgcgcag gcatggttta
    18781 ccgcaacgag aaccggcagt ttgggcgatg ttcttgccga tatggcaggt acggttctcg
    18841 cactctttgc cgcccgcgcc gccgaccgcc cggactgaat cggtttattt tccccaaaca
    18901 ggatgcacct cttcccgata tatcctattt ttccccttac atatcaatcc catctcataa
    18961 acaaaaccga caaatcgttt acaatatatt tacactacat cagattacaa atatactcga
    19021 accagttgca gaagcggcga ttccacaaac cgtttcggat tgcacgacac aaaagaaaaa
    19081 ccgattttgt tgccttaaag gagtattcat gaacctgcat gcaaaggaca aaacccagca
    19141 tcccgaaaac gtcgagctgc tcagtgcgca gaagccgatt accgacttta agggcctgct
    19201 gaccaccatt atttccgccg tcgtctgttt cggcatttac cacatcctgc cttacagccc
    19261 ggatgccaat aaaggtatcg cgctgctgat tttcgttgcc gcactttggt ttaccgaagc
    19321 cgtccacatt accgttaccg cgctgatgat ccctatcctc gccgtcgtac tcggtttccc
    19381 cgacatggac atcaaaaagg cgatggctga tttttccaac ccgattatct acattttttt
    19441 cggcggcttc gcgcttgcca ccgccctgca tatgcagcgg ctggaccgta aaatcgccgt
    19501 cgccctgctg cggctgtcgc gcggcagtat gaaggccgcc gtgctgatgt tgttcctcgt
    19561 taccgccttt ctgtccatgt ggatcagcaa caccgccacc gccgcgatga tgctgcctct
    19621 ggcaatgggt atgctgagcc acctcgaccg ggaaaaagaa cgcaaaacct acgtcttcgt
    19681 cctgctcggc atcgcctatt gcgccagcat cggcggcttg ggcacgctcg tcggctcgcc
    19741 gcccaacctg attgccgcca aagccctaaa tctggacttc gtcggctgga tgaagctcgg
    19801 cctgccgatg atgctgttga ttctgccctt gatgctgctc tccctgtacg tcatcctcaa
    19861 acctaatttg aacgaacgcg tggaaatcaa agccgaatcc atcccttgga cgctgcaccg
    19921 cgtgatcgcg ctgttgattt tccttgccac agccgccgcg tggatattca gctccaaaat
    19981 caaaaccgcc ttcggcattt ccaatcccga caccgttatc gccctgagtg ccgccgtcgc
    20041 cgtcgtcgtc ttcggcgtgg cgcaatggaa ggaagtcgcc cgcaataccg actggggcgt
    20101 gttgatgctc ttcggcggcg gcatcagcct gagcacgctg ttgaaaacat ccggcgcgtc
    20161 cgaagccttg ggacagcagg ttgccgccac cttttccggc gcgcccgcat ttttggtgat
    20221 actcatcgtc gccgccttca ttatttttct gaccgagttc accagcaaca ccgcctccgc
    20281 cgcattgctt gtaccgattt tctccggcat cgctatgcag atggggctgc ccgaacaagt
    20341 cttggtattc gtcatcggca tcggcgcatc ttgtgccttc atgctgccgg ttgccacacc
    20401 gcctaacgcg attgtgttcg gcacgggctt aatcaagcaa cgcgaaatga tgaatgtcgg
    20461 catactgctg aacatcctct gcgtagtatt ggttgctctg tgggcttatg ctgtactgat
    20521 gtaaaccatc gacctaaaca acaagaccgt ctgaaagaat atttttcaga cgaccttgaa
    20581 gtttgtcgtt cagacacaat ttgtcgaatc attcaaaacc ggattctaac gaaaggaaac
    20641 ccatgattat cctgcacacc aacaaaggcg acatcaaaat cgaactcgat ttcgacaaag
    20701 cccctgttac cgccaaaaac ttcgagcaat acgtcaaaga cggcttctac gacggcgtaa
    20761 tcttccaccg cgtcatcaaa ggcttcatga ttcaaggcgg cggcatggat gaaaacatga
    20821 acgaaaaaga aacccgcgat ccgattcaaa acgaagcgtc caacggcctg cccaacgata
    20881 aatacaccat cgccatggca cgcacttccg acccccattc cgccagcgcg caattcttca
    20941 tcaacactgc cgacaacgct ttcctgaact tccgttctaa agagctgtac ggcaaaaccg
    21001 tcgtccaaga ctggggctat gccgtattcg gtaaagtcgt tgacggtttt gatgttgtcg
    21061 atgccatcga aggcgtatcc accaaacgcc acggctacca tgacgacgta ccgagcgaac
    21121 ctgtcgtcat cattaaagcc gaagcggtat aaaccggcaa tccgaaagca gcctgcacaa
    21181 aggctgcttt ttttgtttca ggcggcataa aatccaagca catatgccgt ctgaacacct
    21241 cccgcaagcc ttcggacaat gttgcaacgt gttaaaatag cctcctttcc tgaaaccaca
    21301 acaaggaaac catcatggca aatattgccc gcgacatctt caaagcctac gacatccgag
    21361 gcattgtcgg caaaaccctg accgacgatg ccgcctatct catcggcagg gccatcgccg
    21421 ccaaagccgc cgaaaaaggc atgacccgca tcgcgctcgg acgcgacgga cgcttgagcg
    21481 gtcccgaact gatggagcac atccaacgcg gctttaccga cagcggcatc gacgtcctca
    21541 acgtcggtat ggtcgccacg cccatgctct attttgccgc catcaacgaa tgcggcggca
    21601 gcggcgtgat gattaccggc agccacaatc cgcccgatta caatggtttc aaaatgatgc
    21661 tcggcggcga cacgctcgca ggcgaagcca ttcaagaact tttagccatt attgaaaaag
    21721 acggttttgt tgccgccgac aaacaaggca acgtaaccga aaaagacatc tccggcgaat
    21781 accacaacca catcgtcggc cacatcaaac tcaaacgccc gatgaacatc gctatcgacg
    21841 cgggcaacgg cgtgggcggc gcgtttgccg gcaaactcta taaaggcttg ggcaacgaag
    21901 taaccgagct tttctgcgac gtggacggca atttccccaa ccaccatccc gacccatcca
    21961 aacccaaaaa cctgcaagat ttgattgccg cgctgaaaaa cggcgatgcc gaaatcggct
    22021 tggcgtttga cggcgatgcc gaccgcttgg gcgtagttac caaagacggc aacatcatct
    22081 atccagaccg ccaactgatg cttttcgcgc aagacgtgtt gagccgcaat cctaaagcca
    22141 aagtaatttt cgacgtcaaa tccacccgtc tgcttgcgcc ttggattaaa gaacacggcg
    22201 gcgaacctgt gatggaaaaa accggccaca gctttatcaa atcctccatg aaaaaaaccg
    22261 gcgcgccggt tgccggcgaa atgagcggac acatcttctt caaagaacgc tggttcggct
    22321 tcgacgacgg tctgtacgcc ggcgcacgcc tcttggaaat cctgtctgcc tccgataatc
    22381 cgtccgaagt gttaaacaac ctgccgcaaa gcatttccac gcccgaactc aacatcgccc
    22441 tgcccgaagg cagcaacggc catcaggtta tcgacgaact cgccgccaaa gccgaatttg
    22501 aaggcgcaac cgaaatcatc accatcgacg gtctgcgcgt tgaatttccc gacggcttcg
    22561 gtctgatgcg tgcttccaat accacgccga ttctggtgtt gcgttttgag gcggatacgc
    22621 aagaagccat cgagcggatt caaaaccaat tcaaagccgt catcgaaagc aatccgaatc
    22681 taatctggcc tctgtaaaca caggaaaaat gcttaatcaa atcttggtag attggatttg
    22741 gcttaaaaat ctccgcgtcc gttcgtgttt ggggtggtcg aacaactctt tcgggctgcc
    22801 ctgctctacg ataacgccgc cgtccatcac gacaacggtc gtggcaactt ccagcgcgaa
    22861 cttgatttcg tgggtaacga cgaccatcgt ccaaccttcc cgcgccaatt ccttcatggc
    22921 gttcaacacg tcttgcacca attcagggtc gagtgcggaa gtgggttcgt caaacaacat
    22981 cagctcgggc tgaatcgcca atgcgcgggc aatgccgacg cgctgctgct gaccgccgga
    23041 aagctggtag ggatacaaat ccactttgtc gcccaagccg actttttcca gcagtttcag
    23101 agcctcttcg cgcgcttggg cggcaggctt gccctgtacg gcaaccggtc cttccattac
    23161 gttttccaag gcggttttgt gcggaaagag gttgtattgt tgaaacacca tgcctgattt
    23221 gcggcgcagt gccaaaatat cgtgtttgct tggtttttta gaaaaatcga ttttcagcgg
    23281 tcgctcgttg tcgaactcga tttgtccgtc ttcgggcatt tccaacgcgt ttaggcatcg
    23341 cagaaacgtc gttttgcctg agccggaagg cccgaggata acgaccacct gccctttgcc
    23401 cacatccaaa tcgatgccgc gcaaaatagt gttttcgccg aaggtcttat ggatattgcg
    23461 gattttaatc ataacaactc cttatttggc gacataacgg tcgaaacgtt tttccaaacg
    23521 tgcctgaatc aggaacagaa ccttgcagaa acaccagtaa accaatgcgg cttcgatata
    23581 gacgggcaaa aagtcgtaag tgcggtttgc cgtttcctgc gcgacgcgga acaattcagt
    23641 taccgttacc accgctgcga gcgaggtgtt tttgaacaag ccgataaact cgttgctcaa
    23701 aggcggcacg gcaacgcgga atgcctgcgg cgcgacgatg cggcggaacg tctgcatata
    23761 ggtcataccg atggagaaac ctgcttccca ttggccttta ggtacggaca aaattgccgc
    23821 gcgtatggtt tcggaagcgt atgcaccgac attgagcgag aagccgataa tggcggcggg
    23881 aatcggatcg atatagatac cgacggacgg cagcccgtaa aacacaatca caagctgcac
    23941 caacagcggc gtaccgcgaa tgacggaaat ataaaattcc accaatttca gcaggatttt
    24001 ccgcacgatg ccgccggcgg gcataatccg caccaaagcc acggctaccg caatcatcat
    24061 accgataacg aaagaagctg ccgccaaagg cagagagacc gcgaagccgg ctttgaccat
    24121 aggcaaaaac gcgctgacaa tcatatcggc gcgtgtttcc gtcataaacg gcagcgaagc
    24181 aaggaaatta ttgaacactg atgtcttttc cgaagaattg ttcgcccagt tttttcagcg
    24241 taccgtcggc tttcagctcg ttgattgccg tactgaattt cgccacggct tcgtcattgc
    24301 ccttgttgac aatcaggccg gaaccgactt tttcatcggc aggtgcggac caaacgattt
    24361 tcacgcccgc attcgggttt ttcttcagat agtccaaaac cgccaattcg tcgttcaggg
    24421 ttgcatcggc acgtttttgt tcaatcaggg tcagcgattg cgccaaaccg tcaacagcca
    24481 ccaaatctgc gcctgcagct ttggcttttt cgccgtagtt gctggtcagg gattgtgcgg
    24541 ttttcacgcc tttgatgtcg tcgatagatt tgatgttgct gtcgttacgg gcaaccaata
    24601 cggcaccgct ccagctgtaa ggatcggatt tgtcgaatgt cgcttggcgt tcggggctgg
    24661 tcagaccgac ttggtttgcc accacgtcga aacgccccgc cttcaaaccc gccatcatcg
    24721 aatcccattg cgtttcttta aactcgactt tcacgcccag tttttccgcc acggcgcggg
    24781 ttacttccac atcgtaaccg gtcagtttgc cgtccttgtc gtggtaggta aacggtgcgt
    24841 aagtgccttc cgtgccgacg gtaaccgtgc ctttattgtt gatgcgctcg attaaagaac
    24901 cggaaactgc cgattgtgca ggcgcggaag atgctccgct gccgccttcc gaaccgccgc
    24961 aggccgccaa aaccaatgcg gcaataccgc cgagtacgaa ttttttcaac atcattctct
    25021 cctgtaaaaa gtgtgcaagt gcggcattct aagtgaaatt gcggcaaaca caaagaatac
    25081 tttttttata tggttattcc aaatcggaat ggaaaagata tgccgaagcc gccggaagcg
    25141 gaaataaagg gggcgggaaa ggcggcgggc ggcacgaaac cgaaaagcgg catcaggtat
    25201 gcaaacggcg gattcacgca cgccgttccg gcaaaaatcc gcctgccgat tcggtgctat
    25261 aatccatccg aaacagatga caccaaaaag gaacatctca tgaacacgcc ccaatccgcc
    25321 atcattcccg accacgccca agccggcatc tttatcgaag ccgacttcgc cgccaaccgc
    25381 ctcaacgata ttaaatccgc ctgccgcgct tcgctcgacg cgttatccgc cttgaaaacc
    25441 cgctttccgg acgatatttt gggtctgacc atcgccttcg gcagcaaagc ctgggcaaca
    25501 ttcggacata cggacgaagg cagtgaaatc aaacccttct ccgaaatggg caacgggctt
    25561 gcgccgtcta cgcagcacga tatgtccatc cacatccaat ccttccgcca aaacgccgcc
    25621 tacgcgcttg cccaatccgt tttgggcgcg ttcggcgaca gcatatgcgt cgcgtccgaa
    25681 gaacacggtt tgcgcctgta tcaggatcgc gggctggacg gtttcgtcga cggcacggaa
    25741 aacccgcagg gcgatgaaaa tgtccgcgaa gtcgccatca tccccgaagg aaaacccgat
    25801 gcgggcggca gctatgtcct gctgcaaaaa tacctgcacg atttgaaaaa atgggatgcc
    25861 gtccccgtcg ccgaacagga ggcctcggtc ggacgcggca aggaaaccga cgacgaattc
    25921 ggccacgatg tccgcctgcc cgattcgcac ctcggccgcg tcaacctgaa agaaaacgga
    25981 gtcggcctga aaatcgtccg ccgcagcctg cccttcggca aaatcagcgg cgaacacggt
    26041 ttgatgttta ccgcatactg ccgcacgctg cacaatatcg aagcgcaatt attgagtatg
    26101 ttcggcgaca cggatggcaa aaccgacctg ctgctccggc acctctccgc cgccgtttcg
    26161 ggcggatact actacgcgcc gtctgtcgaa cgcctgcaaa acctctaagc cagacgatgc
    26221 cgtctgaaac cctttttcag acggcatttt cccgttttac cgtccaaccg ttttccgagc
    26281 gcgcactatg tctgcaccca tccaagcatt tgacccgctg accgtcccca tttccggcac
    26341 caacctgatt gaggcctctg ccggcaccgg caaaacctac ggcatcgccg ccctgtttac
    26401 gcgcctgatc gtattggaac aaaaaaacgt cgagcgcgta ttggtcgtta ccttcaccaa
    26461 agccgccacc gccgagttga aaacacgcct gcgcgcacgt ttggacgatg tgttgcaggt
    26521 tttagaaagt aaagaaattg ccaaacttgg agacgacacg ctttcagacg gcatcgccgc
    26581 ctactgcgcc gaacaccaca aaggcgacac cttcctgccc gcactcttaa aacaggcttt
    26641 gcaaaaagag ggccggacgc gtctgattgt ccgcctcaaa gccgccatcg ggcaattcga
    26701 caacgccgcc atctatacca tccacggctt ctgccagcgc atcctgcgcg actacgcgtt
    26761 tttgtgccaa gcaccgttcg atgtcgaact gaccgaagaa gacggcgacc gcctgcttgt
    26821 cccggcgcaa gatttttggc gggaacgcgt cagcaatgat ccggtgcttg ccgcattggc
    26881 gtttaaacgc aaagctgtgc cgcaaaccgt ccttgcccaa atccgcgcct acctgtcccg
    26941 cccgtacctg aatttccgcc gtccgcaaac cgatttgccg caagcccggg atgccgcttt
    27001 ggcaagctgg caaaacattt gcggaaatct ggctgaatta aaagaaactt tttggcgcat
    27061 ccatcccctt ttaaacggca attcatatcg gaaaaacagt tttgccgaac tgtttgacgc
    27121 attggaacaa aaagccctgt cgccggattt gccctttttg gaggcaaagc tgcacgaacg
    27181 gctcttgaaa cttgcgtccg acaaactcga agccggactg aaaaaaggca aaacgcccga
    27241 tgcggcagta tttgccgaat tgcagaaact ggcagacttc aggcgtgatt tggacgcact
    27301 cgaagaagcg gaagaagcaa caataatccg gctgcaactg gatttaatcg gatacctcaa
    27361 ccgcagcctt gccgagatga aaaaatcgcg ccgcgaacgc ggtttcgacg acctgctgct
    27421 cgatgtccac accgcgctga ccgacaatcc gcacgccgaa accctcgccc gcgccgttgc
    27481 cgaaaactgg gaaaccgcgc tgatcgacga gttccaagac accgacccgc tgcaatacga
    27541 aatcttccaa aaaatcttca tcgcccaaaa ccgaccgctg ttcctcgtcg gcgatcccaa
    27601 acaggcgatt tacagctttc gcggagcgga catttacgcc taccttcagg cagcggaaga
    27661 cgcgcggcac cgctacacgc tcgccaccaa ctaccgcagc cacgccgcgc ttatcggcag
    27721 cataggcgca ctgttccgcc tcaaagaacg cccgttcgtt ttggaaaaca tcggctattc
    27781 ggaagtcggt gcggcgcgtg ccgaaagcag attgtcgccc aaacgtcctg ccgtacaggt
    27841 tcgttggctg cacgaaaacg acaatgaaaa agccaacaaa gacgttttgc gccgacgtgc
    27901 cgccgactat tgcgccgacg aaatcgccca cgcgctcaac gaagccgccg gaggccgtct
    27961 gaatttcaaa ggctgcccgt tgcagtcggg cgatattgcc gtgctggtac gcacgcacaa
    28021 cgaggcggtg atggtttccg ccgccctgaa aaaacggcag gtgcaaagcg tcctgctttc
    28081 gcgcgaatcc gtgttcgcct cgcccgaagc cgccgccctg tccgcactca tcggcttctg
    28141 gctcgaaccg cgccgcgccg gaacgctgcg ctttgtcctg acaagcagca tattcggcta
    28201 taacgcgcag caattgcacg acttcaacca aaacgaaagc gagattttgc attgggcgga
    28261 atctgcccga accgcgctcg acaactggaa tcaatacggc attttcgccg ctatgcagca
    28321 attttcccaa acacacggca tcgaaacacg cctcttaagc cggaacaacg ggcgcagcct
    28381 gaccaactat ttccaactgc tcgaactgct tgccgccgaa gacgcgcaaa accgcaaccc
    28441 cgccgcgctg cacaaatggc tgcgcgacca aatcagcctg gccggcaaca acggcggcga
    28501 caaccgcgcc atccgtctgg aaagcgacga agatttggtc aaaatcgtta ccatgcacgc
    28561 ctcgaaaggt ttgcagtatc cgctggtgta ctgcccgttt gcgtgggacg cgcaagatac
    28621 cgggccgtcc gactggcaaa tcctccacca aagcgcaaac cgaaccgaac tgttggcaaa
    28681 ggcgcaactg tccgaagacg aacagaaaca atacgccgat gaagaaatgg cggaacgcct
    28741 gcgcctgctt tatgtcgcgc tgacacgtgc cgaggaacag ctcaacatct acgccgccta
    28801 ttcttccgat accgccgaca accccctcgc ctacctgatt gaaggcttgc cccaagacag
    28861 ccgcgaaacc gtccgccgtg cctatgcgtg tgaaaaagac ggcatcgcga tgctcaaacg
    28921 caactggcag cgcgtggcgg acaacgcccc tgccggcacg gatttcgcct tcacagaaga
    28981 tgcgccgccc cctgccgcct atcgcggcaa cgccggtcaa accgccgaat ttgccgcaaa
    29041 cagcattccc gaacgcagat tccgatttgt ccgccacacc agctttaccg ccttaagccg
    29101 ccatacccaa acgcccgacg gcggcgaaga agatgcctgc ccgtccttgg atgccgccga
    29161 aacctcggtg ccggcgatgc cgtctgaaac gccgacggct tcagacggca tatcgataca
    29221 cgattttccg aaaggcacgc aggcggggct gtgcctgcac gaaattcttg aagatttcaa
    29281 attcggacaa gcagccgccg gacaggaaac tctcattgcc gacaagctga aaaaatacgg
    29341 atttgaagaa atatggctgc ctgccgttgc cgaaatggcg gaagcctgcc gcaaaacgcc
    29401 gctgacgggg gcatactgcc tgtccgacat cccgcccgag tgccgctgtc ccgaaatggg
    29461 ctttaccctc cacaccgaag acttcggcct caaacggctg cgcgactggt ttgcccgcga
    29521 cgatatccga ttgcccgaag tctgccgtgc cgccgccgaa acgctcgact tccacaccgt
    29581 caacggcttt ttaaacggct ttatcgatat ggtctgccaa gaccccgacg gcaatatctg
    29641 cgtcatcgac tacaaatcaa accatctcgg cgcggacgca tccgcctaca cgcaacaggc
    29701 gatggacgaa gccgtcgcgc accaccacta ttaccttcag gcgctgattt acgccgttgc
    29761 cgccgcacgc tacttcaaac tgcgcggaca accgcccgcc gccgtttccg tccgctacct
    29821 gtttttgcgc ggattggatg gcaaaggcgg cggcgtttgg cgttgggaca tagatgccgc
    29881 cgctttggaa cagataaaat aacttcccgt cccttaagac gacaaccgca ggagaaccct
    29941 atgaatatca aacacctgat taccgccgca ctcattgcct cagccgcctt tgccgcgcag
    30001 gcagccccgc aaaaacccct atccgccgcc caaaccgcgc aacatccggc cgtttggatc
    30061 gatgtccgtt ccgaacagga atttagcgaa ggtcatttgc acaacgcggt caacatcccc
    30121 gtcgaccaaa tcgtccgccg catacacgaa gccgcgcccg acaaagacac gccggtcaac
    30181 ctctactgcc gcagcggacg gcgtgccaaa gccgcccttc aggagctgaa aaaagcaggt
    30241 tatacaaatg ttgccaatca cggcggttat gaagacctgc tcaaaaaagg gatgaaatga
    30301 cgcaatgccg tctgaaagga caggctttca gacggcatac gacaccccag cacgcggcgc
    30361 aacatcgggc gcggcgcgtg ccgccccgtc cgaagcctga taaacaaacc gaaaaggaaa
    30421 aaggaaatac gatgaaacac atactccccc tgattgccgc atccgcactc tgcatttcaa
    30481 ccgcttcggc acatcctgcc agcgaaccgc aaacccaaaa cgaaaccgct atgaccacgc
    30541 ataccctcac ctcaaaatac agttttgacg aaaccgtcag ccgccttgaa accgccataa
    30601 aaagcaaagg gatggacatt tttgccgtca tcgaccatca ggaagccgcc caccgaaacg
    30661 gcttaacgat gcagccggca aaagtcatcg tcttcggcac gcccaaagcc ggcacgccgc
    30721 tgatggtcaa agaccccgcc ttcgccctgc aactgcccct gcgcgtcctc gttaccgaaa
    30781 cagacggcaa agtacgcgcc gcctataccg atacgcgcgc cctcatcgcc ggcagccgca
    30841 tcggttttga cgaagtggca aacactttgg caaacgccga aaaactgata caaaaaaccg
    30901 taggcgaata agcccgtcgc cgacatatgg cggatggaaa tcaaacacac acgcccctca
    30961 ttcccacgaa gtcgggaatc caagcggttg ggttaccgtg attttcaatc attgccgaaa
    31021 cggacgattc cggattcccg cccttgcggg gatgacgggc gtgtgcgttt tgccatatca
    31081 caggcaactt tgccgcaaat cttatctgtc gccggtatgc cttcttgttt caatccgcca
    31141 caaaccaaat gccgtctgaa acctgatttc agacggcatt tccgtttatt ccctgctgtc
    31201 acggcaaata tcgatggctt cctgcaaact cgaaacgccg tagattttca ggttcggaaa
    31261 ctctttggcg ttgcgcggca tattggcttt gggaacgatg gcgcgtttga agccgagttt
    31321 ttccgcttct ttgagccgct cttgcccgcg tgcgacgggg cggacttcgc cgcttaagcc
    31381 gatttcgccg aaaaccacgg ttttttcagg catagggcgg ttgcggaagc tggaaagcat
    31441 cgcgaggatg accgccaaat ccgccgccgg ttcgccgatt ttcacgccgc cgacggcgtt
    31501 gaggaacaca tcctgatcga aacaggcgat gccgccgtgg cggtttaaca cggcaagcag
    31561 catcgcaaga cggttttgtt ccagtccgac ggtgaggcgt ttgggcgtga agccgtgcgc
    31621 gtcatcgacc aatgcctgaa tttcgaccaa aagcgggcgg ctgccttcct gtgtaaccaa
    31681 aacgcacgag ccgggcgtat cgtcgcggta gctggcgagg aagatggcgg acgggttgga
    31741 cacacctttc aaaccgtttt ccgtcatcgc gaacacgccc agttcgtttg ccgcgccgaa
    31801 gcggtttttg atggcgcgta tcatgcggta gttggaatgt tggtcgccct cgaaatacag
    31861 cacggtatca accatgtgtt ccagcacgcg cgggccggca atcgcgccgt ctttggtcac
    31921 gtgtccgacc agtatcatgg cgatgcccat ctgtttcgcc atgcgcgtca gttgggcggc
    31981 acactcgcgc acctgcgaca cggagccggg ggcggacgtg atttggtcgg aatacatggt
    32041 ttggatagag tcgatgacga caacttcggg ctgatgctgt ttcaaggccg cctgaatcgc
    32101 ttccatgcgg atttcggcaa gaaggtttac gccgtcggtc ggcagttcca aacgctgcgc
    32161 gcgcagggcg acttgttggg cggattcttc gccggaaacg tatagcactt tacggctttg
    32221 cgccattttg gcgatggttt gcaacagcag cgtagatttg ccgatgccgg ggtcgccgcc
    32281 gagcaggatg accgcaccat cgaccaaacc gccgcccaat acgcggtcga gttcgcccat
    32341 accggtcgga ttgcgcggca cttcggtggc ggtaacggcg gagagggatt ggacggtcga
    32401 agtgtccgcc gcccaagatt ggaaacgggc gtttttcggc tcgggcgcgg caaggctttc
    32461 ctgaagcgtg ttccactcgc cgcaatgcgg gcatttgcct tgccatttcg gggaggtgcc
    32521 gccgcattcg gtgcattggt aaagggtttt aagcgttttt gccatcggtt ttccctgcat
    32581 ctgaaaacaa aaatgccgtc tgaaaatagg gacggttggg attgcgccaa tgcggcaacg
    32641 ccgccgccgt catgtactat ccatacacgg cggatattgc cgcattgcct tatttttacc
    32701 ccaactggcc atctctcggc ttcagacggc atatcaggca gtttcctgcc ggcttacccg
    32761 ccgtgatact gccgcgacag ctcgtgtacg gtatcgacta agattttggc gtgttcgggg
    32821 tcggcgtgtt ggttgatgcc gtgtccgagg ttgaagacat ggccgctgcc gtgtccgtag
    32881 tcggctagga tacgtgcgac ctcggtgcgg atggattccg gcgtaccgaa gagggcgaac
    32941 gggtcgaagt tgccttgcag ggcgacttgc ttgccgacgc ggcggcgtgc ttcgccgatg
    33001 ttgcacgtcc agtccaagcc caatgcgtct gcgccgattt gggccatact ttccagccac
    33061 agcccgccgc ctttggcaaa tacgataaca ggcacgcggc ggccttcgct ttcgcgtttg
    33121 agtccggcga cgatctggcg gatgtatttg aggctgaatt ctttaaacgc cgcatcgctc
    33181 aacacgccgc cccaagtgtc gaaaatctgc accgcctgcg cgcccgcgtc gatttgggcg
    33241 ttgaggtagg cggtaacggc ttgggcgttg gtatcgagga ttttgtgcag caaatcgggg
    33301 cgcgagtaca tcatggtttt gatggtgcgg aattctttgc tgccgccgcc ttcgaccata
    33361 taacaggcga gcgtgaacgg gctgccggag aagccgataa gcggtacgcg gccgtccagt
    33421 gctttacgga tggagctgac ggcatcaaag acgtattgca gtttttccat atcggggacg
    33481 tgcaatttgg caatgtcgtc ctcgtgttgc agggcgcgtt tgaatttcgg gccttcgcct
    33541 tcggcaaaat acagtcccaa gcccattgcg tcggggacgg tcaggatgtc ggaaaacaaa
    33601 atcgccgcgt ccaaatcgaa gcgttccaaa ggttggatgg taacttcggt cgccaattcg
    33661 gtgtttttgc acaaatcgag gaagctgccc gctttcgcgc gtgtggcttt gtattcgggc
    33721 agataacgcc ccgcctggcg catcatccaa atcggcgtgt attcgacggg ctgtttgagc
    33781 agggcgcgga ggaaagtatc gttttttaaa agagtcatac gggttttctg tcagtctgtt
    33841 tgtcaagtga aatggttttc agacggcatc tcaacgatgc cgtctgaagg tttcaacagg
    33901 tttcggagga agggcggttt tcctcggcaa cgcttgccaa aaccaagttg cgctgcgcct
    33961 ccgccttctg cggttctccg gtttcgtcaa aaacctttgc cagaaccaaa cgcgcggaaa
    34021 tactcggctt taatgcaatg ctcgcttcaa ggtagccttt tgccttgccc caaagtttgc
    34081 ggccgtaggc gagccgaccg agatacatca gcagaagcgc gttatcgggc tgttctttca
    34141 gccaagcatc ggcaaaatcg atggctttct gctgttcgcg ctcgcccaaa aagcgcacgc
    34201 tttcgacaaa ggcttccaaa agctcggggc ggcggttgtg cggataatgc tgtttgaccc
    34261 atttgaccgc atcggcatac agtcccaaac gttcgtactt ttccgcaacc gatacgctca
    34321 attccccgtt tttgaggctg tcgggaatcc gcttcaggca ggttttcaaa gcggcggcat
    34381 cggcagcatc cgccagctgg cggcggtatg cccaattttg ataccgttcc atttccgatt
    34441 tgcccaacgc gcccgccttg gaaagttttt cggtttttgc cagaacctgc aacgcgtcgc
    34501 ccctgtcgaa agcgtaacga agttgcagac gcacgaggcg cgtaaggttg gcattcatct
    34561 tcgccgccgc atgaagattg gcttccgccg cttcgtaatc gcgccggttc aacgccgatt
    34621 ccgccaacaa aagataacgg gaaagctgct gcttttccgg cagtttggcg atttccgcaa
    34681 gataacggtc gcgcagctcg atgttttcca tctgcccggc ggcatgtgcg cccaacatca
    34741 atgccaaagt ccggttatcc cccgcctctt tgtttcccaa tacgcgcgag gcttcaagtt
    34801 ccgccttttc aaaacgccct tcaaaatacg ccaaacccgc cttgttcaaa gcaagcgcgg
    34861 ccttgcggcc tttacgcgcc gaaccgaaac gctgcatctt ttcggggata ttgagtacgc
    34921 cgatgatgaa tttgaacagg aaataccaca ccacgacggc aatcagcgaa cctaacacaa
    34981 aggcgtgcag gttgattctg agcatggtct gtccgagtac gatatacacg tcgccggtgt
    35041 aaatgcccga agccaatgcc agcccgacgg cggcggcaaa caggacgaca atccagacta
    35101 ccgttttcat gcgcgttctc ctttagcgga cggcgaacgc cctgcctttt ccggtacggg
    35161 ctgttttttt gcaggctgtt ccggtttgcg ttccgaaggc agggacggtg cttctatggt
    35221 cttcacatcc gatgcggcag ccggttcgga agctgtgttt tcgtttgccg gttcggaagc
    35281 cgcctgttct gcttcttgat tttccgccgc cgtcatgcgc gtaccgtcgc gataggcgcg
    35341 gacggcattt aggctgtttt tcaaaccgtc atccgccgtc atgcgcacat ccaacgcctt
    35401 caattccgcc agttctttca gccacgactg cgtggcggga gacttggcat cgaaatactg
    35461 tctgacggcg gcttcggcat tgttcaaatc gccctgatag acttcgctgt tgcgctgcat
    35521 taatgcagtc cgcgcatcca aaaggcggag gcgcaggttt tcacgcacaa aatatgcctg
    35581 ttcgggagaa atcagcatgg catcgttgtt ttccaaacgg cggatttcga ccagcccctt
    35641 caatgtgccg agggattttt cccatacgtt ctgccaccat gaagcagaag cggcttcgtt
    35701 cttcacctgt acgcccggct tcaatacgcc gtccaaaatc agcggcagtc cggatacggc
    35761 ggtttccagc ctgtcgaggc gcaatgccgt gccggaaata tcgacatagg gacggttttt
    35821 cagttccgcc aagtcgctgc tgactgcctg tttgatcggc agaagctctg cctgatcgaa
    35881 acgggacagg cggctgtcga tatgctccaa tacgccgact gccgtttgga tattgccggt
    35941 caacaccagc tgttgcgccg ccagattgag tatggtctcg gtttcgtcca ccagccaatc
    36001 ggcgcgtcct ttggtcaact cgcgatagga tttttgcatt tccaagattt gttcgccgtt
    36061 tgctttgacg tttccgtcca aacggtcgag ctctgattgt atggcggctt gccggttgag
    36121 gttgtctttc aacagggcgg cgttttccga ctcgcccaag gcggctttgt cgattttttg
    36181 gttgaatgcc agctcttggt ttttcaagac attctgtccc tggacaaaca aaaaaccact
    36241 tgtacccaaa cccaatgccg ccaataccag ggcgcagact gccaaagcgt tgctgccgga
    36301 ctgtttgacg ataaaaggag cggcaggaat gtgtacttct gtttcgtttt ctttgcgtgg
    36361 ggaagaggtt tcagacggca tttcttttga tgcctgtatc tcgcgtacgg gttcggatga
    36421 tttgttttca ggttcgccca ccgttttgct ccttattaat ttgaggttcc gggaaagacc
    36481 atgccgtctg aaacggaaat ggaagaatgg gaaagcgcgg cttccagcgt agggacggtt
    36541 tcgaccgaac acacgccttc gcgcttcaat gcctccgcaa tgcgcggatg atgggtaaag
    36601 tatagcaagg atttgaagaa tcgggaaaat tgcggcggaa cctgtgcaaa cagcgactgc
    36661 acgagttctg cggacgtaat ataggcggcg gcaatatttt cggtttggaa attttgaaag
    36721 ttcaaaggtt tatgccgtct gaaatagact tctgccacct ccgtccgaaa acctttctcc
    36781 tgcaaggcat tcatcagaaa atcccgcccg ccgtgtccgc gcacaaacaa tacgcgcgca
    36841 ccttcgggca gactgttcca aaccggcagg cgcaaaaccg cctcgctgtc gttgccgtca
    36901 tcaggcgcga tgaccgttct gcccaaacag cgttccaatg cgcggcggct gcccttccct
    36961 acggcaatgt gcatctttat gccgtctgaa aggttaaggt acgggacggc ggtttcaacg
    37021 gcggtcggac tgacccaaaa cacggcatcc gcacgggcat attgttcgga caaaagttcc
    37081 agtccggcag catctgcttc gatttcgacc ggactcaata cttccgcgcg ccaaccggca
    37141 ttcaggcaag tttcgacatc ttctgcggcc ctgcccgacg gacggacaat cagcatgacg
    37201 ggtttcgctg tttccatcgc cttatccgcc ccgattacta ggaaaaatcg tcatcgttga
    37261 aattcgcctg cgcggttttc ggcgtacagc cgacccgtgc gacttccttg cccctacgct
    37321 ccacaacgac accgctgctt tccgtatgag tcacggaatc gaagcctgtc catatggtgt
    37381 acataaattc gccgttttgg aatttcatcg ttgcccaacg accgctgccc ataccttgcc
    37441 acctgtcgga acgccccaac aggtcagctt tgctgttgcg tatggcaatt tctttttttg
    37501 ccgcactgcc gaacgaatat tcgtaaagat tgcggttgat tttttgaact tctatatatt
    37561 tgttgttgtc cgttttacag gaaaacaccg tatccgccca cacggttcgg gtcgcagccg
    37621 acagaagcaa tacagcagaa aggaacattt ttttcatcgt atttccttaa tggttgaaac
    37681 tccgccattt ggacatccgt ccttcgtggc agcagcatca gatgttattt gagaggggtg
    37741 taaccccttc caaattaggg caacacatag ggcaacgctt tatgtgtcgt cctgtgtgtt
    37801 gaaacatcat tgcccgtatc ctgaaataga aaagaaaatg cccgttttac ggtcttcttt
    37861 ccgacaaaat gccgtctgaa acggatttca gacggcatgg tcgaaaatta ttgcgcggca
    37921 agcggcttga gcagcaaggt ttcgccgctt tgcacaactt tttcaagcag gtcgatattg
    37981 ggatgcttgc cgggatgggc gcgcgcgtcg gcaacgtgtt cggcaaacca tatcaaaccc
    38041 tgttctgccg cttctttgtc caattttccg tcaaaacgtt ctgccaaagc gttgtacaac
    38101 ttgagcgaac cgagcttacc ctgaacggca ggaatgtggt gaaccgtttt gccatctgca
    38161 tcctgaacgt ccaaaccgcc cagatggtcg attgaagaaa atgtggcgag atagtcttga
    38221 aaattcatat caaatccgaa aatcagtcag ttagcgcgtg ccgaaaatct tgtcgcccgc
    38281 atcgcccaag ccggggatga tgtagccgtt ctcgttcaag tggctgtcga gcgcggcggt
    38341 gtaaatcgta acgtcgggat gcgcgtcgtt gaccgccttc acaccctcgg gcgcggcaac
    38401 cagcaccagt gccttgatgt ttttgcagcc cttggctttc aacaggtcga tggtggcaac
    38461 catcgaaccg cccgtcgcca gcatcgggtc gataatcagg gcaggacgtt cgtccatgct
    38521 gtccacgaat ttctcgaagt aggaaacggg tttcagcgtt tcctcgtcgc gctgcagtcc
    38581 gactacgctg attttggcag tcggaatcag gtcgagtacg ccgtcaagca tacccaaacc
    38641 tgcacgcagg atgggaacga cggtcaatgt tttgcccttg atgcgatcgc cttcaatctg
    38701 accgcaccat ccgtcgataa ggtatttttc gatttcaaaa tcacggcttg cctcgtatgc
    38761 catcaggcgc gccagctcga tggcaagcgt ccggaatttg taggtgctgc aatccgcctc
    38821 cctcatcagg gttaatttgt ggcggacgag cggatggttg ataacattaa cgttcatcgc
    38881 ggtgttccag tgtgattttg agacgcgcca ttatactttt ttttgatttg ccggaaaaga
    38941 aaatgccgtc tgaaacacgt tcagacggca ttgccgaatc catcaggctt tcagcagctc
    39001 ttgcagctcg cctgcctcat acatttccat caggatgtcc gaaccgccga caaactcgcc
    39061 gttcacataa agttggggga tggtcggcca gtcgctgtat tccttaatgc cttggcgtac
    39121 ttcgggattt tccaatacgt tgacggtaac gtaatcggtg cagcctgccg cgttcaggat
    39181 ttgcacggcg cgggaagaga aaccgcattg cggaaactgc ttcgtacctt tcataaacaa
    39241 tacgacgcgg tgtgtcgtta ctacttcttt aatttggtcg tggatggaag ccatcgctta
    39301 ttccttttga taaagttgac aaaatttgtc aggtaggacg cattatacgc aaaagcggaa
    39361 acttcccaca atatttgccg tatatcgcgc agtatcaatg ttgtgaacgg aaatattccc
    39421 actcctcgac aatcctgctg tccggcaaat ggcacagggc atatccgccg ccgctttcgt
    39481 ctttttttac ttcccgtctg ccgcctttgg caatgcagaa tttggaagcg gaatttgcca
    39541 tgcctgtccg aaacgtgttg gcaggcagcc ggcagcagcg cggacatgca tacggatgaa
    39601 ttgccttcat ggttttcctt atcgtcggta cagggtcaga cggtccgcat atcgggtact
    39661 tttttaaaca gccggtaaaa gttttccgtc gtatatgccg caacctgttc caatgtttga
    39721 ttccgcaatt tggcgatatg ttcggcggta tggcgcacaa aagccggttc gttctgcctg
    39781 ccgcgtttgg gaacgggggc gaggaacggc gcatcggttt ccaccaaaat gcggtcgtcc
    39841 ggaacgtatt ttgccgcctc ctgaaccaag ggtgcgtttt taaaggtaac gattcccgag
    39901 aaagaaatat aaagccccaa atccattgct gcacgggcaa aaccgatgtc ttcggaaaaa
    39961 cagtggataa cgcccgaatt aacccggcat tctttcagga tagacaaggt gtccgccgcc
    40021 gcatcacgcg tatggacgat aacgggcagt ccggtttgat tggctgcttc gatgtggtct
    40081 gcaaagcgtt tgtgttgcca ggacaaatcg cctttgcacc agtaataatc caaacccgtc
    40141 tcgccaatgc cgaccacttt cggcgaggcg gctgcggcaa ccatttccgc aatagaaaat
    40201 tcttcggctt ccttgctgtc gggatgtacg cctatggtgc aatagatgtg ttcgtgcgct
    40261 tcggcgatgg caaagacttc ggagaagctt tccctactga cgctgatggc gagcacctgc
    40321 cccacgccgt ttgcttccat gttggacaaa acttcgggca ggcgttcttt caaaccttca
    40381 aaattgaggt ggcagtgcga atcgatgata tgcatggcgt tacatggtaa acgtaggtct
    40441 gctgccgccg attgtgttgc ccagttcgac ttcgatctgg tctttgactt tcaggcagtt
    40501 ttcgtgtttt gtgaatgcca gccccacccc tttgggtttg gaggaagtac gcgcaggatt
    40561 gatccaggcg actttggtcg gcaggaacag tttggggaag ttgaggattt ctacggcaag
    40621 cagaatatcg tccccgatgg aaaatacgtc gttggtctgc acaaacagac cgccgtgttc
    40681 caaaaacggc atataggagc tgtacagcag attcatgtct ttcagctgca acgacatcat
    40741 ttttgccgga atattttgtc cgtctgacat aattcacccg ttctctttct tcaattccaa
    40801 ataattgatg agcagatgct cgatctgcat tttgacattt aaagtatgaa acccgtaagg
    40861 ggcaagctgt ttgagcatat cctccgccgc aaatacattg cgcgggcgga aaccggatac
    40921 cgtctgaagc agcctgtctt cataagcggg ataatagacg ggtttcatgt gttgcaggca
    40981 caatcccaaa tcgaccagcc atttctgcat ccacccgaca aatacgtcga gcggaagttt
    41041 ctccttatcg aaaagcgcgg cgtaatccaa aatcttcaac aaccttggtt ctgccaaaat
    41101 atccaacagt ttaatccgca acgcacggac accgtccgcc tcatcaaaca gcggcgcacc
    41161 cgaatggaac gccaaaaatt cttccggctc cgccacaccc ctgtcgcgca gatatgccaa
    41221 tgcttcccca tgcgaaggag cgggcaaaac catcttccgg cagcgacttt taatggtcgg
    41281 taaaaccttg tccgccgcgt ggctgaccag caaaaagacc acttgtggcg gcggttcttc
    41341 caacactttc aacaaactgt tggcggcttg gacattcata ctttccgcag gatgaatcag
    41401 aatcacgcgc aaaccgcccc gtaccgaagt caggtacaca ttatcgatga tttccctgac
    41461 ggcatcgatt ttgatctgca acagtttgcg tccgttttcg ggttcgtccg acaagggggt
    41521 gatttcgtaa aaatcgggat ggcttccctg tccaaacaga tggcaggaca tacattcgcc
    41581 acagggtttg cagcccggtg caggggtttc gcacaacagt gccttcgccg caaagcgggc
    41641 aaatgtagtt ttccccgtat cttttttgcc ggcaaacagc catgcattgg gacgacgctc
    41701 ccaatgttcc gcaatctgcc gccattgctc attatgccac ggataaatca tttcaaacca
    41761 tccgtccgga aatccatacc gccatcagag cagttccaaa tcggggctgg aactttgcgc
    41821 gcggcggctg cgcaactgta ccgccaaacg caaatcgtgt gcggaatcgg catttttcaa
    41881 tgcttcttgc agggaaatat cgcctttttc atacaattgg taaaggtgtt gatcgaaggt
    41941 ctgcataccc agggtagtgg attttttcat cacttctttg atttcatgga tgttgccgtt
    42001 gtgaatcaac tccgaaatca ggggcgaatt gagcagcacc tcgactgccg ccaccctgcc
    42061 cttgccgccg tctcgcggaa cgaggcgttg cgaaataaac gcctgaaggt tgagcgacaa
    42121 atccgtcagc aattgttcgc gccgctcctc ggggaaaaag ttgatgatgc ggtcgagtgc
    42181 ctgattggtg ctgttggcgt gcagcgtcgc catacacaaa tgccccgttt cggcaaaggc
    42241 aatggcgtag tccatcgttt cgcggtcgcg gatttcgccg atcagaatca catccggcgc
    42301 ctgacgcagc gtgtttttca acgccgccat ccagttttcc gtatccacgc cgacctcgcg
    42361 ctgggtgatg atgcagtttt tgtgttcgtg gacaaactcg atcgggtctt cgatggtgat
    42421 gatgtgtccg aacgaatttt cattgcggta gtcgataagc gaggcaagcg aagtcgattt
    42481 gcccgagccg gtgccgccga caaaaataac cagcccgcgt tttttcagcg cgacatcctt
    42541 caagaccggc ggcaggttca ggctttcaaa cttgggaatc ttgctggtaa tcgcacggaa
    42601 taccaacgct gtcgcgccgc gctgtatcat cgcattgacg cggaagcggc tggtgtccgg
    42661 cagactgatg gcgaagttgc actcgttggt cgatgaaaat tcttccgcct gcttcgcact
    42721 cataatcgaa aaggcgattt ccatacattt ttccgccgtc agcggttcgt ccgtgatgcg
    42781 ggtgattttg ccgtccagct tcattgcggg cgggaaatga gtcgtcacga acaggtcgga
    42841 acctttgttt tggttcatat ggcgcagcca tgcgaacagt tcttcctttg cggtcatatt
    42901 ttcatcggta aacatcctcg tcccctaatc ttcaaacaat ctgtaccttc ccattctacc
    42961 aaaaacccgc cgtgccgtct gaaaccgttt cagacggcac ggacaaacca cctccactca
    43021 atcctgccgt gttagcgtgt ataatcaggc attctatccg aaattcacaa caggtcagca
    43081 atatgtcttt gaaaacagta gccgttatcg gcgcaatgga acaagaaatc gagcttttgc
    43141 gcgagatgat ggaaaatgtc aaagccgtct ctttcggcaa gtttgccgcc tatgaaggcg
    43201 aattagcggg aaaacgcatg gtgcttgcat tgagcggcat cggcaaggtc aacgcggcgg
    43261 ttgcaacggc ttggattatc cgtgaattcg caccggactg cgttatcaac accggcagcg
    43321 cgggcggctt gggcaagggt ttgaaagtcg gcgacgtggt gattggcacg gaaaccgcac
    43381 accacgatgt cgatgtaacc gcattcggct atgtttgggg acaagtgccg caactgcccg
    43441 ccgtattcgt ttcagacgac ctcttggtcg gcaaggcaaa acgggcggcg cggacgtttg
    43501 aaggcgcggc ggtagaacaa ggtctgattg tcagcggcga ccgcttcgtc cacagcagcg
    43561 aaggcgtggc ggaaatccgc aagcacttcc ccgaagttaa ggcggtagaa atggaagcgg
    43621 cggcaatcgc ccaaacctgt catcagttgg aaacgccttt cgtcatcatc cgcgcggttt
    43681 ccgattcggc ggacgaaaag gcagacatca gctttgacga atttttgaaa acggcggcgg
    43741 caagttctgc aaaaatggtg gcagaaatcg tcaaatcttt ataaaacctt tatcaaatca
    43801 tgccaaaaca gcggttttcc gttagaatat cgggctattt ccacgttgcg cccgatattc
    43861 ggacgcaccg ctgtttgttc agacggcatt tctatagtgg attaaattta aatcaggaca
    43921 aggcgaggca acgccgtact ggtttaaatt taatccacta taaaacctac cgttcagcat
    43981 taaaaacaat ccaatgaaaa atatccgaaa tttctccatc attgcccata tcgaccacgg
    44041 caaatcgacg cttgccgacc gcttcatcca atattgcggc ggcttggatt tgcgcgaaat
    44101 gagtacgcag gtgctcgatt ccatggacat cgaaaaagag cgcggcatta ccattaaagc
    44161 gcaaaccgcc gcgctcaact acaaagcacg cgatgggcag gtgtatcaac tcaacctaat
    44221 tgacacgccg ggacacgtcg acttctctta cgaagtttcc cgttcgctgt ccgcctgcga
    44281 aggcgcgctt ttggtcgttg acgcgtcgca gggcgtggaa gcgcaaaccg tggcgaactg
    44341 ttacaccgcg attgatttgg gcgtggaggt tgtgcctgtt ttgaacaaaa tcgacctgcc
    44401 cgccgccgac cccgaacgcg tggagcagga aattgaagac atcatcggca tcgatgcggt
    44461 cggcgcggtg cagtgttccg ccaaaagcgg catcggcgtg gaagacgttt tggaagaaat
    44521 cgttgccaaa attcctgcgc cgaccggcga tgaaaacgcg ccgctgcaag ccgtgattgt
    44581 cgattcgtgg tttgacaact acgtcggcgt ggtcatgctg attcgagtga aaaacggtac
    44641 catcaagctg aaagacaaag tgcgctttat gagcaccaag gcggaaacgc aggtcgagca
    44701 gctgggcgta ttcacaccga aatcggttca aaaacaagaa ctcaaagccg gcgaagtggg
    44761 ctttttgatt accggcgtaa aagaattggg tcaggcgaaa gtcggcgata cggttacact
    44821 ggttgccaac cctgccactg agccgctgcc cggcttccaa gaagtacaaa gccaagtatt
    44881 cgccggactt tatcccgtgg aaagccacga ctacgaagcc ttgcgcgacg ctttggaaaa
    44941 attgcagctt aacgacgctt cgttgaaatt cgagcctgaa gtttcccagg cattgggctt
    45001 cggcttccgt tgcggcttct tgggtctgtt gcacttggaa atcgtgcagg aacgcttgga
    45061 gcgcgagttc gatatggatt tgattaccac cgcgccgacg gtggtttacg aagtcgtgtt
    45121 gaaaagcggc gaaaaaatcg aagttgaaaa cccgtccaaa ctgcccgaca tcggcagcat
    45181 cgaaaccata ctcgagccga ttattaccgc gaccatcctt gtgccgcagg aatacgtcgg
    45241 caacgtcatg actttgtgta accaaaagcg cggcgttcag gtcaatatgc agtacatggg
    45301 ccgccaagtc atgctgactt acgatttgcc catgaacgaa gtcgtcatgg acttcttcga
    45361 caaactcaaa tccacttcgc gcggttatgc ttcgttggac taccatttca aagagttcca
    45421 accgtctgat ttgattaagc tggatattat ggtcaacggc gaaaaagtcg atgcattaag
    45481 cctgattgtg caccgtcaaa gcgcggttca ccgaggccgc gagctggcat caaaaatgcg
    45541 cgagctgatt ccgcgccaaa tgttcgacat cgccgtccaa gccgccatcg gcagccagat
    45601 tatcgcccgc gaaaacgtca aagccctgcg taaaaacgtt ttggcgaaat gttacggcgg
    45661 cgatattacg cgtaagaaaa aactgcttga aaaacaaaag gcaggtaaac gccgtatgaa
    45721 acaagtgggc aatgtggaaa ttccgcaaag cgcgttcttg gcgattttgc aggtgagcga
    45781 caaataactc tggcacacag ggcggcgcgt cgggaacacc cctcaaaccg ccctgatttc
    45841 aggggcacgc gcccgcaaac aaattttgca atttgccgcc ttaaaacggt tgcacggaca
    45901 ggcgggtttt taagcattaa ggaacaacaa tgaacacaat gctaatgtcg ggcgcggctg
    45961 ccgcgctgct tgccggcatc atcctttatt tcaaaagcga caaaaagcgg caggaaaacg
    46021 gtgaatggag ttccggtctg gaatacgcct atatcctgac ggcggtcggc gtgtttgccg
    46081 ctttgtccct gtttatgagc tttaccgccg ttttcctgat tttcgttgta ttgtgcggta
    46141 cggcttgggg ggtatacaaa taccgcctga agactcatcc cgaaatctcg gaaagcagcc
    46201 acttcggcga ttatttcggc agtttcttcc ctaccgtttt ggtattgttc ctcatccggt
    46261 cgtttattgc cgaaccgttc caaatcccgt ccagctcgat gcgcccgggc ctgattaagg
    46321 gcgatttcat tttggtcggc aaattttcct acggcctgcg cgtacccgtt ttaaacaata
    46381 tatttattcc tacaggcaaa atcgaacggg gcgatgtcgt tgtttttaat tatcctctgc
    46441 agccggagat gacctacatc aagcgtattg tcggcattcc gggcgatgtg gtcgaatatc
    46501 gggataagat tttgacggta aatggcaaac ccacttccga tattcctaac ggcacatacc
    46561 gttatcccga cgataccgac ccttccgaaa tccacaacac ggatatgttc cgcagcggtt
    46621 tggacggcaa atccttcaat attctgaaaa aagaaggaca gccggccgtt tccctgcccg
    46681 tattgggcaa atatacctcc gatattatgt ctgaaaacgg atattccata gagcaaagcg
    46741 gtttggaaca ctgccaatat gccgacgacg gcagcggttt cgtgtgcaaa gttcccgaag
    46801 gacgctattt cgctatgggc gacaaccgcg acaacagtgc cgattcgcgc tactggggat
    46861 ttgtggatga caagctggtt gtcggcaagg caatgttcat tttgatgaac ttcggcgatt
    46921 tcggcagggc cggtacggca atccgttagg ccaggaagcc aagaatgccg tctgaaaata
    46981 gtttcagacg gcatttgcta ttcctcactt ttgcaggcgg atctaacgtt gtcggatttt
    47041 cctac
//
LOCUS       DAWGNT010000002        33997 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.002, whole genome shotgun sequence.
ACCESSION   DAWGNT010000002 DAWGNT010000000
VERSION     DAWGNT010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 33997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33997
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.002"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(1055..1723)
                     /locus_tag="WHR98_000049"
     CDS             complement(1055..1723)
                     /locus_tag="WHR98_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEZ2306798.1"
                     /translation="MKNLAIFDLDNTLINTDSDHAWPQYLIKKGLVDAAETEAQNEKF
                     YRDYQNGCLDIDAFLKFHLAPLARYSKEELAEFHREFMAEYIIPHISPMQRMLVQSHQ
                     MAGDETLVISSTNEFIITPVCRLFGITNIIGTQLESGSDGRYTGNYIGTPSLKEGKIT
                     RLNQWLAERGETLESYGKTYFYSDSKNDLPLLRLVDEPVAVNPDAELEKEAKEKGWPV
                     LNFK"
     gene            complement(1720..2388)
                     /gene="hda"
                     /locus_tag="WHR98_000050"
     CDS             complement(1720..2388)
                     /gene="hda"
                     /locus_tag="WHR98_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HEZ2306799.1"
                     /translation="MNQLIFDFAAHDYPSFDKFLGTENAELVYVLRHKHGQFIYVWGE
                     EGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQAL
                     LFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEVKPLTDQEKIDALA
                     SMAAARQVTVDSEIFEYLLKHWRRDMDSLMMMLDTLDNYAVTMGKRITLPLLRQLLKQ
                     QETQ"
     gene            complement(2493..4164)
                     /locus_tag="WHR98_000051"
                     /pseudo
     CDS             complement(2493..4164)
                     /locus_tag="WHR98_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707572.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
     gene            complement(4453..5100)
                     /locus_tag="WHR98_000052"
     CDS             complement(4453..5100)
                     /locus_tag="WHR98_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF799 domain-containing protein"
                     /protein_id="HEZ2306800.1"
                     /translation="MKPLILGLAAVLALSACQVQKAPDFDYTSFKESKPASILVVPPL
                     NESPDVNGTWGVLASTAAPLSEAGYYVFPAAVVEETFKQNGLTNAADIHAVRPEKLHQ
                     IFGNDAVLYITVTEYGTSYQILDSVTTVSAKARLVDSRNGKELWSGSASIREGSNNSN
                     SGLLGALVSAVVNQIANSLTDRGYQVSKTAAYNLLSPYSHNGILKGPRFVEEQPK"
     gene            complement(5097..5465)
                     /locus_tag="WHR98_000053"
     CDS             complement(5097..5465)
                     /locus_tag="WHR98_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4810 domain-containing protein"
                     /protein_id="HEZ2306801.1"
                     /translation="MNPKTLSRLSLCAAVLALTACGDNGQKSLYYYGGYPDTVYEGLK
                     NDDTSLGKQTEKMEKYFVEAGNKKMNAAPGAHAHLGLLLSRSGDKEGAFRQFEEEKRL
                     FPESGVFMDFLMKTGKGGKR"
     gene            complement(5475..6146)
                     /locus_tag="WHR98_000054"
     CDS             complement(5475..6146)
                     /locus_tag="WHR98_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HEZ2306802.1"
                     /translation="MKTVSTAVVLAAAAVSLTGCATESSRSLEVEKVASYNTQYHGVR
                     TPISVGTFDNRSSFQKGIFSDGEDRLGSQAKTILVTHLQQTNRFNVLNRTNLNALKQE
                     SGISGKAHNLKGADYVVTGDVTEFGRRDVGDHQLFGILGRGKSQIAYAKVALNIVNVN
                     TSEIVYSAQGAGEYALSNREIIGFGGTSGYDATLNGKVLDLAIREAVNSLVQAVDNGA
                     WQPNR"
     gene            complement(6311..7030)
                     /locus_tag="WHR98_000055"
     CDS             complement(6311..7030)
                     /locus_tag="WHR98_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEZ2306803.1"
                     /translation="MATLTDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLE
                     KVYDAIVEAGYPEPFAICFDLISAEEKEFNQFAATIAEATQGKLDGIVHCAGYFYALS
                     PLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGF
                     GASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEAKSERKSYGDVL
                     PAFVWWASTESKGRSGEIVYL"
     gene            complement(7114..8427)
                     /locus_tag="WHR98_000056"
     CDS             complement(7114..8427)
                     /locus_tag="WHR98_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEZ2306804.1"
                     /translation="MMNTPHPRPKIAVIGAGWAGLSAAVTLTRHADVTLFEAGRQAGG
                     RARTLAGNTDGFGFLDNGQHILLGAYRGVLRLMKTIGSDPRAAFLRVPLHWHMHGGLQ
                     FRALPLPAPLHILGGVLLARRAPTAFKAKLLADMSDLQKSARLGQPDTTVAQWLKQRN
                     VPRAAVMQFWQPLVWGALNTPLETASLRVLCNVLSDGVLTKKSGSDYLLPKQDLGAIV
                     AEPALAELQRLGADIRLETRVCRLNPLPDGKVLVNGEAFDAAVPATAPYHAAALLPEG
                     TPEHVQTAYQNLRYHAITTVYLRYAEPVRLPAPLTGLADGTVQWLLCRGRLGLPENEV
                     SAVISVSDRVGAFANRAWADKAHADLKRILPHLGEPEAVRVITEKRATTAADAPPPDL
                     SWLHRHRIFPAGDYLHPYYPATLEAAVQSGFASAEACLQSLNDAV"
     gene            complement(8825..9697)
                     /gene="hpnD"
                     /locus_tag="WHR98_000057"
     CDS             complement(8825..9697)
                     /gene="hpnD"
                     /locus_tag="WHR98_000057"
                     /EC_number="2.5.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="presqualene diphosphate synthase HpnD"
                     /protein_id="HEZ2306805.1"
                     /translation="MKGLDYCRQKAEESRSSFLSGFRFLTQEKRDAVTVLYAFCRELD
                     DVVDECSNPDVAQATLNWWRGDLDKVFGGAMPEHPVNQALRQVKETFKLPKYELEALI
                     DGMQMDLVQARYGSFEELKLYCHRVAGVVGCLIARILGFSDGKTLEYADKMGLALQLT
                     NIIRDVGEDARRGRIYLPMEEMRRFDVPASVILQCSPTGNFAELMAFQIKRARETYCE
                     AVSLLPAADKKAQKVGLVMAAVYYELLNEIDRDGAQNVLKYKIALPSPRKKRIALKTW
                     LFGFKPRPGTPERA"
     gene            9868..11730
                     /gene="hscA"
                     /locus_tag="WHR98_000058"
     CDS             9868..11730
                     /gene="hscA"
                     /locus_tag="WHR98_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HEZ2306806.1"
                     /translation="MALLQISEPGMSAAPHRHRLAAGIDLGTTNSLVATVRSGSAACL
                     PDAEGRVTLPSVVRYLENGGIEVGKTALSAQKTDPLNTVSSAKRLIGRTLADLHQNTH
                     YLPYRFGGNQRVIELHTRQGVKTPVEVSAEILKTLKSRAEETLGGDLVGVVITVPAYF
                     DDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDNASEGTFVVYDLGGGTFDVSVL
                     QLTKGLFEVKATGGNSALGGDDFDHRLFCRLLEQNGLSQLNEQDSQLLLSLVRAAKEQ
                     LTTQTEARIQATLSDGMPIDTSISRAEFHNLTQHLVMKTLEPVTQALKDAGVGKNEVK
                     GVIMVGGSTRMLHVQQAVATFFGQTPLNNLNPDEVVALGAAIQANVLAGNKTDGEWLL
                     LDVTPLSLGLETYGGLAEKIIPRNSTIPTARAQDFTTFKDGQTAMTIHVVQGERELVS
                     DCRSLAKFTLRGIPPMAAGAARIRVTFQIDADGLLSVSAQEQSTGVQAQIEVKPSYGL
                     DDDTITQMLKDSMSNAAEDMAARARAEAVVEAESLTDAVNAALELDSDLLEAEELQQI
                     RQGIADLQGRVKDGKAEDIRAAAAKLGSITDNFAAKRMNRNIQRALTGQSVDNI"
     gene            11807..12463
                     /locus_tag="WHR98_000059"
     CDS             11807..12463
                     /locus_tag="WHR98_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEZ2306807.1"
                     /translation="MEKSGIVYLMKTVIKGVYKIGISEVSNFEGRMRHLENNGYANVA
                     GLERILAVKTDNYKEKENLLHEIFSKSRIGDTELFAVDENLVKRLFLSLRGEIVFPKN
                     ETAESEFEKSVHERRQEGNAGSGRKQLLDLVRRGHREYPYALPRLLAGAASYKPRKSK
                     IRLFKEAYFGKSGTRLTDEIADGIHIYTCFSRADLEKAYSEYLELFKSESDAEGRKPR
                     "
     gene            12499..13260
                     /locus_tag="WHR98_000060"
     CDS             12499..13260
                     /locus_tag="WHR98_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2314 domain-containing protein"
                     /protein_id="HEZ2306808.1"
                     /translation="MMGDSVIYYVEQADEPVNRAGERARKTFKYFWRELFWERRRIIP
                     ALDFAMVKAPFFQDGEDGEICEHMWIDDIYFDGLYIYGVLNNKPGELTNIEQGESICV
                     PVDDISDWMFVCNGIPYGGFTIQAMRGQMTEEERTEHDAAWGIDFGDPGQVLLVYEEK
                     EHPENLEEHPMCRNCIDDFRQQLSQNPDFLHEQDEDGYTPLHHEAIAGNALMVQAMLE
                     YGANPASKTSEGYTALDFARLTGWQNVADLLEPRH"
     gene            13315..13656
                     /gene="fdx"
                     /locus_tag="WHR98_000061"
     CDS             13315..13656
                     /gene="fdx"
                     /locus_tag="WHR98_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009425374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HEZ2306809.1"
                     /translation="MPKITVLPHTTLCPEGAVIEDAPEGKTVLDVLLDHDIEVDHACE
                     KSCACTTCHVIIRKGFDSLEEPTELEEDLLDQAWGLEADSRLSCQAVVAGEDLIVEIP
                     KYTINHAREEH"
     gene            complement(13756..14349)
                     /locus_tag="WHR98_000062"
     CDS             complement(13756..14349)
                     /locus_tag="WHR98_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEZ2306810.1"
                     /translation="MNNALTAKLSKLVYTAPDNPDFLSKIGEFDRLILLVRRLYQMLD
                     EQNALSRLTLCIRCQNQRGLIVLDGARADSDAATIRMKRWHIYTQIAERMANRYDQIS
                     VTVENETANPTQLEQYYLDIADKTIALFGLKEAKLQQQEYPEDKTQQQSILKKLSEKP
                     GRNLSMINTKAKIEQYAANQTQTPLKITRQRFICRPN"
     gene            14426..14623
                     /gene="iscX"
                     /locus_tag="WHR98_000063"
     CDS             14426..14623
                     /gene="iscX"
                     /locus_tag="WHR98_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HEZ2306811.1"
                     /translation="MKWTDTQRIAEDLYDLHGETIDPKTVRFTQLRDLIMALPEFDDD
                     PARCGERILEAVQQAWIDEAE"
     gene            complement(14691..15092)
                     /locus_tag="WHR98_000064"
     CDS             complement(14691..15092)
                     /locus_tag="WHR98_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEZ2306812.1"
                     /translation="MKDKHDSSAMRLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKV
                     KNSKTIDIGDIIDLTLNSLPYKIKVKGLNHQRRPASEARLLYEEDAKTAALREERKQL
                     DQFSRITSAHPDGRPTKRDRRQLDRLKKGDW"
     gene            15303..16262
                     /locus_tag="WHR98_000065"
     CDS             15303..16262
                     /locus_tag="WHR98_000065"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HEZ2306813.1"
                     /translation="MKPVFLDFEQPIAELTNKIDELRFVQDESAVDISDEIHRLQKKS
                     NDLTKSIFSKLTPAQVSQVSRHPQRPYTLDYIDALFTDFEELHGDRHFADDHAIVGGL
                     ARFNGQSVMVVGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKTAEKFGLPVMTFIDT
                     PGAYPGIGAEERGQSEAIGKNLYELTRLHVPVLCTVIGEGGSGGALAVAVGDYVNMLQ
                     YSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEPLGGAHRDF
                     GQTMKNVKAVLEKQLHEAQSIPLADLLSRRFDRIMAYGKFSEQ"
     gene            16330..17640
                     /gene="tilS"
                     /locus_tag="WHR98_000066"
     CDS             16330..17640
                     /gene="tilS"
                     /locus_tag="WHR98_000066"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEZ2306814.1"
                     /translation="MLTLDAFEQCLKDCFPQGLNGKKTAVALSGGLDSVVLLHLLVRA
                     GKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVGLETVKVCVEKNGLGIEAAAR
                     QKRYAAFAEKGFDVLALAHHRDDQIETFMLAVARGGGLRALAAMPTVRPFGEKGIIWR
                     PLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNRFRHRILPELSAQIPHFGRHVLN
                     NVRALQEDLALLDEIIGQDCRWVCEEGSFDTVRWQAFSPRRKTHILRYFLKENGIPMP
                     NQNALADIARVLTEAKTGRWNLQGFELHHYAGRLFVFRLEKTDKLRFLKDRQISGNLR
                     EILTGQGFVLKRHPFGLPEHLLEQDGILRTVAVSDTLAVGGIHKDVKKILQGKRVLPV
                     LRPIWPLVADSGNRPLALANCCADFQISVSDGILPFHPDFPILF"
     gene            17714..18499
                     /locus_tag="WHR98_000067"
     CDS             17714..18499
                     /locus_tag="WHR98_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEZ2306815.1"
                     /translation="MRHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQ
                     SGGMPVGVYIPEGKMPSEEIRRLRAVVPEGRIFSVSDGILKKISSLSCADDILALIDI
                     PLGGTLPDKGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGM
                     GAHFLSGIYPQADLEIWLARYKGRVFATALREEKQAVLYGEDLCGPTAWVFGNEGAGV
                     GKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSAY"
     gene            18509..18706
                     /locus_tag="WHR98_000068"
     CDS             18509..18706
                     /locus_tag="WHR98_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306816.1"
                     /translation="MPSEKIYYGVLIFLCIASMLLSPFFYAGALKPKKAALRKDGQWK
                     LILLSNTVAAAVLAWVWWKWF"
     gene            18968..19321
                     /locus_tag="WHR98_000069"
     CDS             18968..19321
                     /locus_tag="WHR98_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306817.1"
                     /translation="MKNCEFFYDPTRAIYDSGADYLTREKHRLVVIANSAWGLLLNLS
                     CYYDEVLEKRKIPFGKQEIDDDMDKVSALKRKFKDISEIKVGDGWEYPFNYEQGMKEL
                     DEVLLKYIPFFEEER"
     gene            19333..19614
                     /locus_tag="WHR98_000070"
     CDS             19333..19614
                     /locus_tag="WHR98_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306818.1"
                     /translation="MRVSKIIGSMLLVTAVQTVFSANVYACRHNGKTSYSQTPGKHCT
                     NAGLGRDRVYSSVRPAVKDRAEDAGVGDYSDTVRDEHVQNPRENTHKDA"
     gene            19700..21076
                     /gene="mpl"
                     /locus_tag="WHR98_000071"
     CDS             19700..21076
                     /gene="mpl"
                     /locus_tag="WHR98_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HEZ2306819.1"
                     /translation="MKHIHIIGIGGTFMGGIAAIAKEAGFEVSGCDAKMYPPMSTQLE
                     ALGIGVHEGFDAAQLEEFKADVYVIGNVAKRGMDVVEAILNRGLPYISGPQWLAENVL
                     HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN
                     SKSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHL
                     VRTVPSGGLIICNGQQQSLQDTLDKGCWTPVEKFGTEHGWQVGEANADGSFDVLLDGK
                     TAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVKRRMEIKGTANGI
                     TVYDDFAHHPTAIETTIQGLRQRVGGARILAVLEPRSNTMKLGTMKSALPVSLKDADQ
                     VFCYAGGVDWNVAEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILVMSNGGFGGIH
                     TKLLDALR"
     gene            21283..22335
                     /gene="bioB"
                     /locus_tag="WHR98_000072"
     CDS             21283..22335
                     /gene="bioB"
                     /locus_tag="WHR98_000072"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HEZ2306820.1"
                     /translation="MTVSPVALRRKTECKPHPTARYWKKCDVEALFGLPFLDLIYQAA
                     EIHRQNFNPREIQLSTLLSIKTGGCPEDCAYCPQSAHHNTNLGKEQMMDVDEIVEKAK
                     IAKSRGASRFCMGAAWRGPKPKDVETVSAIIKAVKGLGMETCGTFGMLEEGMAEDLKE
                     AGLDYYNHNLDTDPDRYNDIIHTRQHEDRMDTLGKVRNAGLKVCCGGIVGMNETRAER
                     AGLIASLANLDPQPESVPINRLVKVEGTPLADAEDLDWTEFVRTIAVARITMPQSYVR
                     LSAGRSNMPEAMQAMCFMAGANSIFYGDKLLTTGNPDEDGDRILMEKLNLYPLQFELE
                     GEVAEVEKASGIKVDY"
     gene            complement(22417..23051)
                     /locus_tag="WHR98_000073"
                     /pseudo
     CDS             complement(22417..23051)
                     /locus_tag="WHR98_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575362.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
     gene            23374..23634
                     /locus_tag="WHR98_000074"
     CDS             23374..23634
                     /locus_tag="WHR98_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEZ2306821.1"
                     /translation="MTKAVRRKNVQTPKICYAFRTPSAYGQYLADAGFDYLSFANNHS
                     NDFGAQGITATAASGSSFTYSIALKPLPITRPKLRKIPPSPR"
     gene            complement(23697..25556)
                     /gene="ilvD"
                     /locus_tag="WHR98_000075"
     CDS             complement(23697..25556)
                     /gene="ilvD"
                     /locus_tag="WHR98_000075"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEZ2306822.1"
                     /translation="MPEYRSKTSTHGRNMAGARALWRATGVMETDFGKPIIAVANSFT
                     QFVPGHVHLHNMGQLVAREIEKAGAIAKEFNTIAIDDGIAMGHSGMLYSLPSRDLIAD
                     SIEYMVNAHCADALVCISNCDKITPGMLIAAMRLNIPTIFVSGGPMEAGKVIGVANIQ
                     PERRLDLIDAMIESADDNVSNRQVEEVEQNACPTCGSCSGMFTANSMNCLTEALGLSL
                     PGNGSYLATHAGRKELFLEAGRMIVEITKRYYEQDDETVLPRSIATKKAFENAMTMDI
                     AMGGSTNTILHLLAVANEAGVDFKMADIDRLSRVVPCICKTAPNNHDYYMEDVHRAGG
                     IFAILKELDKAGKLHTDVYTIHALTLKDAIEKWDVTNPENTRAIERFKAAPGGVRTTQ
                     AFSQNRMWKTLDLDREKGCIRDVAHAYSQDGGLAVLFGNIAERGCVVKTAGVDESILK
                     FTGRARVFESQEDAVEGILGNQIVAGDIVIIRYEGPKGGPGMQEMLYPTSYLKSKGLG
                     KACALLTDGRFSGGTSGLSIGHASPEAAEGGAIGLVHEGDTVEIDIPNRSIHLAISDE
                     ELAARRAEMEARGSKAWKPKNRDRYVSAALRAYGAMATSADKGAVRDVAQIER"
     gene            complement(25729..27498)
                     /gene="cysI"
                     /locus_tag="WHR98_000076"
     CDS             complement(25729..27498)
                     /gene="cysI"
                     /locus_tag="WHR98_000076"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HEZ2306823.1"
                     /translation="MTVQTKTKGLAWQEKPLSDNERLKTESNFLRGTILDDLKDPLTG
                     GFKGDNFQLIRFHGMYEQDDRDIRAERAEAKLEPLKFMLLRCRLPGGIIKPSQWIELD
                     KFARENSHYRSIRLTNRQTFQFHGVPKAKLQTMHRLLHKLGLDSIATAADMNRNVLCT
                     SNPIESELHRQAYEYAKKISEHLLPRTRGYLDVWVDGKKVQSSDDFLQEDEPILGKTY
                     LPRKFKTAVVIPPLNDVDCYGNDLDFVAVSDGNGQLAGFNVLAGGGLSMEHGNTKTYP
                     NISLELGFVPPEHALKAAEAVVTTQRDFGNRSDRKNARTRYTIQNMGLDNFRAEVERR
                     MGMPFEPVRPFKFTGRGDRIGWVKGIDGNWHLTLFIESGRLVDEGGKQLLTGVLEIAK
                     IHKGDFRITANQNLIVANVAEADKAKIEELARTYGLIRNDVSKLRENAMSCVSFPTCP
                     LAMAEAERVLPDFIDDLDKIMAKHGTSDDYIVTRITGCPNGCGRAMLAEIGLVGKAVG
                     RYNLHIGGDREGVRIPRLYKENITLPEILAELDDLIGKWAAERNIGEGFGDFAIRTGI
                     VKPVLNAPVDFWDASKAVAIARA"
     gene            complement(27525..29339)
                     /locus_tag="WHR98_000077"
     CDS             complement(27525..29339)
                     /locus_tag="WHR98_000077"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     flavoprotein subunit"
                     /protein_id="HEZ2306824.1"
                     /translation="MSEHDMQNTNPPLPPLPPEITQLLSVLDAAQWAWLSGYAWAKAG
                     NGASAGLPALQTALPAAEPFSVTVLSASQTGNAKSVADKAADSLEAAGIQVRRAELKD
                     YKAKNISGERRLLLVTSTQGEGEPPEEAVVLHKLLNGKKAPKLDKLQFAVLGLGDSSY
                     PNFCRAGKDFDKRFEELGAKRLLERVDADLDFTASADGWTGRIVARLKEEAAKNRATP
                     APQTTPPAGLQTAPDGRYCKADPFPAALLANQKITARQSDKDVRHIEIDLSGSDLHYL
                     PGDALGVWFDNDPALVREILDLLGIDPATEIQAGGKTLPVASALLSHFELTQNTPAFV
                     KGYAPFADDDELDRIAADNAVLQGFVQSTPIADVLHRFPAKLTAEQFAGLLRPLAPRL
                     YSISSSQAEVGDEVHLTVGAVRFEHEGRARVGGASGFLADRLEEDGTVRVFVERNDGF
                     RLPEDSRKPIVMIGSGTGVAPFRAFVQQRAAENAEGKNWLIFGNPHFAADFLYQTEWQ
                     QFAKDGFLHRYDFAWSRDQEEKIYVQDKIREQAEGLWQWLQEGAHIYVCGDAAKMAKD
                     VEAALLDVIIGAGHLDEEGAEEYLDMLREEKRYQRDVY"
     gene            complement(29336..30622)
                     /locus_tag="WHR98_000078"
     CDS             complement(29336..30622)
                     /locus_tag="WHR98_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit 1"
                     /protein_id="HEZ2306825.1"
                     /translation="MTAQHQAPLRFITAGSVDDGKSTLIGRLLYDSKALLSDQIKTLE
                     SGKSKGLKETIDFSILTDGLEAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRN
                     MVTGASTASAAVVLVDASQLDFGAQPLQLLPQTKRHSAILRQLNCPHIVVAVNKMDLL
                     DYSEDKFNAIVEAYRRLAEQLGLKDVHFVPVSALLGDNLVYPGGNMPWYRGEPLLVIL
                     ENLPGADETGRSAADFYFPVQLVVRQDADKADDFRGYQGRIERGSVAVGQTVRIEPNG
                     LTAEVSEIITPKGEVAQAFAGEAATLRLDRDIDVSRGDLFVDKNSPLAPQKHLEATLC
                     WFDERPLNTARKYLLKHGTQTVPAKVGEIESVLDVRTLEQEAGAESLKMNDIAKVRIN
                     LQKPVTATPYAENTAAGSFILIDEATYGTVAAGMIL"
     gene            complement(30661..31584)
                     /gene="cysD"
                     /locus_tag="WHR98_000079"
     CDS             complement(30661..31584)
                     /gene="cysD"
                     /locus_tag="WHR98_000079"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HEZ2306826.1"
                     /translation="MTKTEPNNAQLDWLESESIHIIREVAAECENPALLFSGGKDSVV
                     LLALACKAFRLGSRAVKLPFPLVHIDTGHNYPEVIAFRDAQAAKLNARLIVGRVEDSI
                     AKGTVVLRKETDSRNAAQAVTLLETIEANGFDALMGGARRDEEKARAKERIFSFRDEF
                     GQWDPKAQRPELWSLYNTRLHKGENMRVFPISNWTELDIWQYIARENLELPPIYYSHR
                     REVVRRRGLLVPVTPLTPKMPSETSEILDVRFRTVGDISCTCPVESTASTPTEIIRET
                     AVTDISERSATRLDDQASEAAMEKRKKEGYF"
     gene            complement(31622..32362)
                     /locus_tag="WHR98_000080"
     CDS             complement(31622..32362)
                     /locus_tag="WHR98_000080"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HEZ2306827.1"
                     /translation="METTLFKPALWQIPHIGSGGETALAEKTETLKQRLHRIAGSHRD
                     ARFASSLAAEDMVITDLIAGENLNIGIFTLDTGLLHTETLNLLDRLGRAYPHLRIKRF
                     RPVREDADRYVESKGRFAFYDSVEARRECCRIRKTEPLDRAIAGADAWLTGQRREQSA
                     TRTELPFAEYDAGRGIDKYNPIFDWSEHDVWAYILANNVPYNDLYRQGFPSIGCDPCT
                     RPVKAGEDIRAGRWWWEGRNSKECGLHK"
     gene            complement(32373..33824)
                     /gene="cobA"
                     /locus_tag="WHR98_000081"
     CDS             complement(32373..33824)
                     /gene="cobA"
                     /locus_tag="WHR98_000081"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEZ2306828.1"
                     /translation="MNYFPIFANLAGRPVLVVGGGSVAARKISLLLDAGAQVRVVANQ
                     LNAELSALAAENKILWLAEEFRAEHIRTVFLIIAASSDQALNRRVFQLAESCQKPVNV
                     VDDRDYCSFIFPSIINRNPIQIAVSSSGSAPVLARLLREKLEALLPPSLGDMAEISGR
                     WRDAVKGKLKSVTERRRFWEKQFNGRFAALVKNRQNTLAERELAGQLEQSRQNDQGGS
                     VSLVGAGPGDAGLLTLKGLQEIQQADVVLYDALVSDGILSLVRRDAERIFVGKRARGG
                     RTPQEDTNALMVRLAREGRRVVRLKGGDPFVFGRGGEELETLARHQIPFSVVPGITAA
                     VGATAYAGIPLTHRDYAQSAVFVTGHRKADAPDIEWQTLARSRQTLVIYMGALKAALI
                     AERLQQHGRSPDTPAAVISQGTLPAQKTATGTLANLAELAETAPNPALIVIGEVVGLH
                     EKLAWFGENGEGENRVGQAYPALGGLNAGQRAA"
BASE COUNT         7452 a         8704 c         9715 g         8126 t
ORIGIN      
        1 tgatttttgt taatccacta tacgtcctag attcccactt tcgtgggaat gacgggatgt
       61 gggtttttgt gcggatttga accggtaagg gtggtgtggg attggtggtt tgcttaggat
      121 cttttggatt gtagtttgta tatacattta cttgttgata aaagataaaa taaaattaga
      181 aactaaaagt gagaaaaaat taataataat agggatgtat aaatgtaaag gctccgtttc
      241 atagctaagg ttatctgaat atatggaaaa aaagtaaaag tccataaaac taaaatatat
      301 agataatgct aatgataata gaattatcac tttcctagag taaggataat atttttttat
      361 cgtaaaaaaa tataaaatag gataaataat tgccatatag atagattttg taacaaaatt
      421 aaaaataaat aataaaaata atgtaataaa gtatattttt tggctatgaa ataaaattgt
      481 acataattga acgagcagat caaaaaatga actacatata acaataaata ataacgtatt
      541 taccatacta aatttaatag gtctcattat catatttaat aaccacttca tagtatagtg
      601 gattaaattt aaaccagtac agcgttgcct cgccttgccg tactatctgt actgtctgcg
      661 gctttgtcgc cttgtcctga tttttgttaa tccactataa atgcagagtg ggtggaaaca
      721 ctcactttat ggtttgctac gctctgctca attagcaacc cgataaccca atatggataa
      781 tagggtaatt aatccaatct aatttgtcag catccgttaa tttattgcaa aataaagtat
      841 tgaattatgt cgggtgcaaa tgacgaaata taagtttccg tgcggacgga tcaagattcc
      901 cactttcgtg ggaatgacgg tggaaagatt gttgtttttc ccgatgaatt cctgtgtttt
      961 ttgtttttcc ggataaattc ctgtggcttt gagtttttgg gatttcagcc ccaatgccgt
     1021 ctgaacgccg aatcgggctt cagacggcat tgcgtcattt gaaattcaaa accggccagc
     1081 ctttttcttt ggcttctttt tccagctcgg catcggggtt gacggcgacg ggttcgtcga
     1141 cgaggcgcag cagcggcagg tcgtttttgg agtcgctgta aaaataggtt ttgccgtagc
     1201 tttcgagcgt ttcgccgcgt tcggcgagcc attggttcag gcgggtgatt ttaccttctt
     1261 tgaggctggg cgtgccgatg taattgccgg tgtagcggcc gtcggaaccg gattcgagtt
     1321 gtgtgccgat gatgttggta atgccgaaaa ggcggcagac gggggtgatg atgaactcgt
     1381 tggtcgatga gatgacgagg gtttcgtcgc ctgccatttg gtggctctgc accagcatac
     1441 gctgcatagg cgagatgtgg gggatgatgt attccgccat aaattcgcgg tgaaactctg
     1501 ccagctcttc tttgctgtaa cgagcgagcg gggcaaggtg gaatttgagg aatgcgtcga
     1561 tgtcgaggca accgttttgg tagtcgcggt agaatttttc gttttgcgct tcggtttcgg
     1621 cagcgtcaac caagcctttt ttgatgaggt attgcggcca ggcgtggtcg gaatcggtgt
     1681 tgatgagggt gttgtcgagg tcgaagatgg cgaggttttt cattgggttt cctgttgttt
     1741 caaaagctgg cgcaaaagcg gcagggtgat gcgtttgccc attgtgacgg cgtagttgtc
     1801 cagcgtgtcg agcatcatca tcaggctgtc catatcgcgc cgccagtgtt tgagcaggta
     1861 ttcgaaaatt tcggaatcga cggttacttg gcgtgccgcc gccatactgg cgagcgcgtc
     1921 gattttttct tggtcggtta agggtttgac ttcgtaaacg aggcagtacg ccatacgcgt
     1981 ccgcaaatct tcgcggatga caagctgctg gggcgtgtat tccgaaccga gcagcaaaaa
     2041 gcctttgccg ctgttgcgga agcggttgaa gatggaaaaa agcagggctt gttcttcgtt
     2101 gcccagtttt tcgacttgat cgacggcgag gtattccgcc tcgaacgcgg catcggtcag
     2161 cggcatggag gcggcatcga tataggcggc gtttttgccg gcttcgagcg cctgtgcgac
     2221 ccacgcctgc aaaagatggc ttttgcccgc gccttcttca ccccagacat agataaactg
     2281 tccgtgtttg tgtcggagga catagaccag ttccgcgttt tccgtgccga ggaatttgtc
     2341 gaaactcgga tagtcgtgtg cggcaaagtc gaaaataagc tgattcacgg ttcggcattc
     2401 cgaggggtgg taaacgggtt tattgtacgt tgttttcgcg cgcctttcca atttgaacga
     2461 tgccgtctga aaacggcttc agacggcatc gttcaaccgc aggcaacgtt gccgacatcg
     2521 aggcgcatat tgtggaacgc gttgagcgtg cttcggtgtc cgatgctgat gatgatgctg
     2581 tcgggcagtt tttgctttaa ggcgcggtag agcgcggctt cggccggttc gtccaaggcg
     2641 gcggtggctt cgtcgagcag gacgattttg ggcttggaaa gcagggcgcg gacgaaggcg
     2701 acgcgttgca gttcgcccag ggagagtttg tgctgccagt cgtctgtttt gtccaatttg
     2761 tcaatcagat aacccaagcg gcaggtgttc atggcttcga ttagctccgg atgctgtttg
     2821 tcgatgtcgg gataacaaac cgcgtcgcgc aggctgccct gtgccgtgta cgggcgttgc
     2881 ggcaggaaga ggatgtcttg atgcggcgga cggctgactt tgccgttgct gccgaacggc
     2941 caaagcccag ccagcacgcg cagcagcgag gttttgccgc aaccgctcgg accgcgtatc
     3001 agcagggaat caccgctttt gaggttgata ttgataccgt ctaataaaac ttcgccgttg
     3061 tggtggaaca gagcgacgtt ttccagtgca atgccgtctg aaacttcgct aatctcgggt
     3121 tgccgcgcgc tgtgttgttc ttcggtactc agcaaaaagc cgtacagacg ctccaatcgg
     3181 gcgcggtagg cggtgaattt gttgtagaac attcgaaaga aagaaagcgc gttttgcagt
     3241 cgcgcgaagg cttggacggt ttgctggatg tcgccgattt tgatttgtcc ggcaaacagg
     3301 cgcggagctt gcaaaataat cgggaagagt ttgatgccgt tggtgaacat atcgttaaag
     3361 ccgcttaagc agacgctttg ccgcgcaatg cgccaacggt tgcggataat ggctttaaag
     3421 cggtcggaaa gctggtcgta ttcatgtttt tcgccgttgt aaaacgccac gctttcggcg
     3481 tggtcgcgca cgcggatgag ggaataacgg tagtcgccgt tgagtttttc gttttcataa
     3541 ttgtaacgaa tcaaagggtt gcctatccac atggcgataa aggtcgccaa aatcacaaat
     3601 atatagacaa accaaacgat gccgtgcgga atgtcgaagc cgaacacggt caggatgcca
     3661 gccaagcccc gcaaaacaac ggcaaattcc agagaagtaa cgaccgaatt gaccatgccg
     3721 cgcacaaatt cgatggtcga agcgataaat tcctgcgcgt cctgttggat acgctggtcg
     3781 atgttgtctg gcgcgtggcg gcgcatttgc aggcggtagt agtttttgtc ggcaagccag
     3841 cgtgctgtca gcacttcgtt gagccgctcc gaccatttaa tcgccaagcc ttgatcgagg
     3901 aagtcgttga cgacgttgtt aaacgcccgt atcagcacca cgcccgcgtt cattgcagca
     3961 aacatccaaa atgccgaagc atttcaaatc ctgcatcgag tcgtaaagcc ctttggacat
     4021 aaaggtactc aacacattca gccgcatttc ggttaacacc agcgtaatca tcgccgtaat
     4081 cagcagcaag actttgaccg cgcttttcag tgtcagacaa agccaaagcg gtgtggaata
     4141 aagctcggtt tgccatttct gcatgggaaa tttcttacgg tatcaatgcc gtctgaaaaa
     4201 gacgggtaca gttgattttt tgatgaagtt tggggaagtt ttgcaggtca gggcatattg
     4261 cgtgttaatt taccatacaa ccacgccgga attaagttta aatttgaata aaaggttcgg
     4321 gttctgcaaa atacagaacc cgaaccttgt tcggatattg aaaccggccg cccgattttg
     4381 ggcggtgcgg cttgcaagta tcaagattcg catatgccgt ctgaagctcg gagaggttca
     4441 gacggcatat gcttatttgg gctgctcttc gacgaatctc ggacctttca agatgccgtt
     4501 gtgagaatag ggcgacagca ggttgtatgc ggcggttttg gaaacctgat aaccgcggtc
     4561 ggtcaggctg ttggcaatct gattgaccac tgcgctgacc aaagccccca acaggccgct
     4621 gttgctgttg ttgctgcctt cgcggatgct ggccgaaccc gaccacaact cttttccgtt
     4681 gcgggaatcg accagccgtg ctttggcgga tacggtcgtc acgctgtcta aaatttgata
     4741 tgaagtgccg tattcggtaa ccgtaatgta caaaaccgca tcattgccga aaatctgatg
     4801 cagtttttcc ggccggacgg cgtgaatatc ggcggcattg gtcaagccgt tttgtttgaa
     4861 ggtttcctcc acgactgcgg cggggaagac gtaatagccg gcttcggaaa gcggcgcggc
     4921 ggtcgaagcc agtacacccc atgttccgtt gacatcgggc gattcgttca gcggcggaac
     4981 caccaaaatt gaagccggtt tgctttcctt gaatgacgtg tagtcgaaat cgggagcttt
     5041 ttgaacttgg caggcagaca gcgccaacac ggcggcaagc cctaaaatca aaggtttcat
     5101 cgcttgcctc ctttaccggt tttcatcagg aagtccataa atacgcccga ttcgggaaac
     5161 agccttttct cttcttcaaa ctggcggaac gcgccctctt tgtctcccga acgggaaagc
     5221 agcagtccca gatgggcgtg cgcacccggg gcggcattca tttttttgtt gccggcttcc
     5281 acaaagtatt tttccatctt ttcggtctgc ttgcccaacg aagtgtcgtc gtttttcaaa
     5341 ccttcataga cggtatcggg atagccgccg taataataca gggatttttg cccgttgtcg
     5401 ccgcaggcgg tcagagccaa gaccgccgca cacagcgaca aacggctcaa ggttttcgga
     5461 ttcatcattt ctccttaacg gttgggttgc catgcgccgt tgtcaacagc ctgaaccagg
     5521 ctgttgacgg cttcgcggat tgccaagtct aaaactttgc cgttcaaagt cgcatcgtag
     5581 ccggaagtgc cgccgaaacc gatgatttca cggttggaaa gtgcgtattc gcccgcgccc
     5641 tgtgcggaat agacgatttc ggaagtattg acgttgacga tattcagagc cacttttgca
     5701 taggcgattt gcgatttgcc gcgacccaaa atgccgaaga gctgatgatc gccgacatct
     5761 ctgcgtccga attcggttac atcgccggta acgacataat ctgcgccttt caggttatgc
     5821 gctttgccgg aaatgccgga ttcctgtttt aatgcgttca aattggtgcg gttcagtacg
     5881 ttgaagcggt tggtctgttg caggtgcgtt accagaatgg tttttgcctg gctgcccaaa
     5941 cggtcttccc cgtcggagaa aatgcctttt tggaagctgg agcggttgtc gaatgttccg
     6001 acggaaatcg gggtacgaac accgtgatat tgcgtattgt aggaggcgac tttctctacc
     6061 tcgagactgc gtgaggattc ggtcgcacag ccggtcagtg aaacggcagc ggcggcaagg
     6121 acaacggcgg tggaaacggt tttcataaaa tttaccctaa ggtcaagtta aggaaataac
     6181 gggttgtcat tattgtcctt atgtaaattt aagtcaaggt gtttgtctgt gcgggacgga
     6241 tgcgcgcgga aggtacggat atttttcaaa cggaatcgcg gcgcgggcgg gatgcctgcc
     6301 ttttccggat ttagaggtaa acgatttcgc cactccgccc tttgctttcg gtacttgccc
     6361 accagacaaa tgcgggcagc acgtccccgt agcttttgcg ttcgcttttg gcttcgcccg
     6421 gatgggattt gatgcgttgc ggggaattga tggggccggg gacgaggacg ttggcgcgca
     6481 ggttgccgaa gcgttcccat tcgtcggcgg cgactttgca caggtagttc aacgcggctt
     6541 tggacgcgcc gaagccgccc cagtaggctt tgggtgtttc gccgtggctt tcgccgacga
     6601 agatgacgga cgcgtcgggc gactgcttca gcagcgggaa cagggcgcgg gtcagcccca
     6661 taggtgcgac ggtgttgatg cggtattggt tgacccattc ggcgacggtt tggaaatcca
     6721 gcggcgagag ggcgtaaaaa tagccggcgc agtggacgat gccgtccagt ttgccttgcg
     6781 tggcttcggc aatggtggcg gcgaactgat tgaattcttt ttcttccgcg ctaataaggt
     6841 caaagcagat ggcgaatggt tcggggtatc cggcttcgac aatcgcgtca tacacttttt
     6901 ccagtttttt ctgatgacgg gcaaccaaaa tcacagtcgc gcctgctgcc gcataggctt
     6961 tggcaacctg ttcgcccagc ccttgcgatg cgccggttac taagatggtt ttgtcggtca
     7021 gtgtcgccat actttttcct ttttggtggt cggtcggggg tattttagcg ttttgccgca
     7081 ccttgtaaag cgtcctgatg ccggccggcg ttttcagacg gcatcgttca ggctttgcag
     7141 gcaggcttcc gcggaagcga aacctgattg tacggcggct tcgagcgtgg cggggtagta
     7201 tgggtggagg tagtcgccgg cggggaagat gcggtgccgg tgcagccacg acaaatccgg
     7261 tggtggggca tcggctgcgg ttgtggcgcg tttttcggtg atgacgcgca cggcttcggg
     7321 ttcgcccaaa tgcggaagga tgcgtttgag gtcggcgtgg gctttgtccg cccacgcccg
     7381 gtttgcaaac gcgccgacgc ggtcggaaac gctgatgacg gcggacactt cgttttcagg
     7441 cagtccgagc ctgccccggc aaagcagcca ttgcaccgtg ccgtcggcaa ggccggtcag
     7501 cggggcgggc aggcggacgg gttcggcgta gcgcagatag acggtggtga tggcgtgata
     7561 gcgaaggttt tgatatgccg tctgaacgtg ttcgggcgtg ccttcgggca ggagcgcggc
     7621 ggcgtggtag ggcgcggtgg cggggacggc ggcatcgaaa gcttcgccgt tgacgagcac
     7681 tttcccgtcc gggagggggt tcagacggca tacgcgcgtt tcgaggcgga tgtccgcgcc
     7741 gagccgttga agctccgcca aggcgggttc ggcgacgatt gcgcccaaat cctgcttggg
     7801 taggagatag tcgctgccgg attttttcgt cagcacgccg tcggacaaaa cgttgcacaa
     7861 cacgcgcagg cttgcggttt ccaaaggcgt gttgagcgca ccccacacca gcggctgcca
     7921 aaactgcatc acggcggcac gcggcacgtt ccgctgtttc agccattgtg caactgtcgt
     7981 gtcgggctgt ccgaggcgtg cggacttctg caaatcggac atatcggcaa gcagtttggc
     8041 tttgaatgca gtcggtgcac gccgggcaag cagcacgccg cccaaaatat gcagcggcgc
     8101 gggcaggggg agggcgcgga actgcaaacc gccgtgcata tgccagtgca gcggtacgcg
     8161 caaaaaggcg gcacggggat ccgaaccgat ggttttcatc aggcgcaaca cgccccggta
     8221 tgcgccgagc aaaatgtgct gcccgttgtc caaaaaaccg aaaccgtcgg tatttccggc
     8281 cagtgtgcgc gccctgccgc ccgcctgccg gccggcttca aacagggtaa cgtcggcgtg
     8341 ccgcgtcaag gtgacggcgg cggacaagcc ggcccagcct gcgccgatga cggcgatttt
     8401 cgggcgcgga tgcggcgtgt tcatcattta ttcctccaat ggttttgcag ccgtatctat
     8461 ttccgtttcc gaaaatgacg gtagaaaagg atacaggcta aaaataaagg cagcagaaag
     8521 cgcgcatagg gataccacgg atggtctgca tgccagtatc cgtaccgtcc ctgtggaacg
     8581 gtatcatagc ggtaattgtc ggggaaaaag ttgatccaaa ccgttactgc cggccataag
     8641 gctatatccc tgactgcttt catttgcttc tgctcctgtt taaattcccg gcaattcgat
     8701 ttcaaagcgc gaacgccaac gggattgcgc ggttacgatg cagactttca gacgatggtt
     8761 gaaaccccgt ccggcggggc tgtgggaatc gggtttgcct gacgggcggc gggcggtatg
     8821 cgccttatgc ccgttccggc gtgccggggc gcggtttgaa tccgaataac caggttttca
     8881 gggcaatgcg ttttttgcgc ggcgaaggga gggcgatttt gtatttgagg acgttttgtg
     8941 cgccgtcccg gtcgatttcg ttcaatagct cgtaataaac cgccgccata accagtccga
     9001 ctttttgggc ttttttatcg gcagccggca gcagcgatac ggcttcgcag taggtttcac
     9061 gggcgcgttt gatttggaac gccatcaatt cggcaaaatt gcccgtcggg ctgcattgca
     9121 aaatcacgct tgcgggtacg tcaaaccgcc gcatttcctc catcggcagg taaatccgtc
     9181 ccctgcgcgc gtcttcgccg acatcgcgga tgatgttggt cagttgcagc gcaagtccca
     9241 tcttgtcggc gtattccagc gttttgccgt ctgaaaaccc caaaatccgc gcaatcaggc
     9301 agccgaccac gcctgcgacg cggtggcaat acagtttcaa ttcttcaaaa ctgccgtaac
     9361 gggcttgaac caaatccatc tgcatcccgt cgattaaggc ttccagttca tatttcggca
     9421 gcttgaaggt ttccttaact tgccgcaagg cctgattgac ggggtgttcc ggcatcgcgc
     9481 cgccgaatac cttgtccaaa tcgccgcgcc accagttcaa tgtcgcctgt gcaacatcgg
     9541 ggttggaaca ttcgtcaacc acatcgtcca attcgcggca aaaagcatat aaaaccgtta
     9601 ccgcatcccg tttttcctga gtcaggaaac ggaagcccga caaaaaactg gagcggcttt
     9661 cttctgcttt ttggcggcaa tagtcgagtc ctttcacgat ttatattcct aatgatgggc
     9721 gggaaaggcg gattttatcg gcatttggcg gtagagggca atttcggcgg cacgacctaa
     9781 tccttagcgg tttgctcaac tatcggcgca aattctgtta aaatgccgct ttccttcctt
     9841 tacacaccgc accgacaggc agaatttatg gctcttttgc agatttcaga accgggtatg
     9901 tccgccgccc cgcaccggca ccgtttggcg gcaggcatcg atttgggtac gaccaacagc
     9961 ttggtcgcca ccgtccgcag cggcagtgcc gcctgcctgc ccgatgccga agggcgcgtt
    10021 accctgcctt ccgtcgtccg ctatctggaa aacggcggca ttgaagtcgg caaaaccgcc
    10081 ctgtccgccc aaaaaaccga cccgctgaac accgtcagct ccgccaaacg ccttatcggg
    10141 cggacgcttg ccgatctgca tcaaaatacg cactacctgc cttaccgttt cggcggcaat
    10201 caacgcgtta tcgaactgca tacgcggcag ggggtgaaaa cgcctgtcga agtgtcggcg
    10261 gaaatcctca aaacccttaa atcgcgcgcc gaagaaacct tgggcggcga tttggtcggc
    10321 gtggtgatta ccgtccccgc ctatttcgac gatgcccaac gccaggccac caaagatgcc
    10381 gcgcgtctgg cgggtttgaa cgtattgcgc ctgctcaacg aacccaccgc cgccgcaatc
    10441 gcctacgggc tggacaacgc ctcggaaggc acgtttgtcg tgtacgactt agggggcggc
    10501 acattcgacg tatccgtatt gcaactgacc aaaggactgt ttgaagtcaa agccaccggc
    10561 ggcaacagcg cgttgggcgg cgacgatttc gaccaccgcc tgttctgccg cctgctcgaa
    10621 caaaacggac tctcccaact caacgaacaa gacagccaac tcctgctctc gctcgtccgc
    10681 gccgccaaag aacaattaac cacgcaaacc gaagcgcgca ttcaggcgac gctttcagac
    10741 ggcatgccaa tcgacacaag catcagtcgc gccgagttcc acaacctgac gcagcatttg
    10801 gtgatgaaaa cgctcgaacc ggtcacacag gcgttgaaag atgccggtgt cggtaaaaac
    10861 gaagtcaaag gcgtgattat ggtcggcggt tcgacccgta tgctgcacgt ccaacaggca
    10921 gtcgccacct tcttcggaca aaccccgctg aacaacctca atcccgacga agtcgtcgcg
    10981 ctcggcgccg ccatacaggc aaacgtcctc gcaggcaaca aaaccgacgg cgaatggctg
    11041 ctgctggacg ttacaccttt gtcgctcggt ttggaaacct acggcggctt ggcggaaaaa
    11101 atcatcccgc gcaattccac catccccacc gcgcgcgcgc aggactttac taccttcaaa
    11161 gacggtcaga ccgcgatgac gatacacgtc gtacaaggcg agcgcgagct cgtttccgac
    11221 tgccgcagcc ttgccaaatt caccctgcgc ggcattccgc ctatggcggc gggtgcggcg
    11281 cgtatccgcg taaccttcca aatcgatgcg gacggtctgc tgtccgtttc cgcccaagaa
    11341 caaagcaccg gcgtacaggc gcaaatcgaa gtcaaacctt cctacggctt ggacgacgac
    11401 accatcaccc aaatgctcaa agacagcatg agcaacgccg ccgaagacat ggcggcacgt
    11461 gcccgagccg aagccgtggt cgaagccgaa agcctgaccg atgccgtcaa cgccgccctc
    11521 gagttggaca gcgatttgct ggaagccgaa gaattgcaac agattcggca aggcatcgcc
    11581 gatttgcaag gccgtgtgaa agacggaaaa gccgaagaca tccgcgccgc cgccgccaaa
    11641 ctcggcagca tcaccgacaa tttcgccgcc aaacgcatga accgcaacat ccaacgtgcg
    11701 ctgacaggcc agagtgtcga taatatttga tacttaaacg gtttcagacg gcatagagat
    11761 aacctgatgc cgtctgaagg ctcgaaaaca cttgaaaaac atcgatatgg aaaagtcagg
    11821 cattgtctat ctgatgaaaa ccgtcatcaa gggcgtatat aaaatcggca tttcggaggt
    11881 aagcaatttt gaaggcagaa tgcgccattt ggaaaacaac ggctatgcga acgttgccgg
    11941 gttggaacgc atcctcgctg tcaaaaccga caattacaaa gaaaaagaaa acctgctcca
    12001 tgaaattttc agcaaaagca ggataggcga taccgaattg ttcgccgtgg acgaaaacct
    12061 tgtgaaacgt ttgtttttat cgcttcgcgg cgaaatcgtg ttcccgaaaa acgaaacggc
    12121 ggaatcggaa tttgaaaaaa gcgtccacga acgcaggcag gaagggaatg ccgggtcagg
    12181 ccgcaaacaa ctgcttgatt tggtacggcg cggacaccgg gaataccctt acgcgctgcc
    12241 ccggcttttg gcgggcgcgg catcctacaa gccgagaaaa tcgaaaatcc gcctttttaa
    12301 agaagcatat ttcggcaaaa gcggcacgag gctgaccgac gaaattgcag acggcatcca
    12361 tatttacacc tgtttttcgc gggcggattt ggaaaaagcc tattccgaat atttggaact
    12421 tttcaaatcc gaatcggatg ccgaaggcag aaaaccacgg taaggtgcaa acagataccg
    12481 tacacgttga ggagcagtat gatgggcgat tccgtcattt attatgtaga acaggcagac
    12541 gaaccggtaa accgtgccgg cgaacgcgcc cgtaaaacat tcaaatattt ttggcgcgag
    12601 cttttttggg aacgccgccg catcattccc gccttagatt ttgccatggt caaagcccct
    12661 tttttccaag acggcgaaga cggcgaaatt tgcgaacata tgtggatcga cgatatttat
    12721 tttgacggtc tttatattta cggtgtgctg aacaataaac ccggcgaact gaccaatatc
    12781 gaacaaggcg aaagcatttg cgttccggtt gacgacatca gcgactggat gttcgtgtgc
    12841 aacggcattc cctacggcgg ctttaccata caggcaatgc gtggacagat gacggaagag
    12901 gagcgtaccg aacacgatgc cgcatgggga atcgatttcg gcgatcccgg gcaggtattg
    12961 ctggtgtatg aagaaaaaga acatcccgaa aatctggaag agcatccgat gtgccggaac
    13021 tgtattgacg attttcggca acagttgtcc caaaatccgg attttctgca tgagcaggac
    13081 gaagacggct atacgccgct tcatcatgaa gccatcgcag gaaatgcact tatggttcaa
    13141 gccatgcttg aatacggcgc aaatcctgcc tcaaagacat cggaaggcta taccgccctc
    13201 gattttgccc gcctgacggg ctggcaaaat gttgccgacc tgctcgaacc gcgacattag
    13261 gcagacagtt ttccgaaaac gaacacaaac actttttaca gaaagacaat aaaaatgccc
    13321 aaaatcaccg tacttccaca cacgacatta tgccccgaag gcgcggttat cgaagacgcg
    13381 cccgaaggca aaaccgtcct tgacgtgctg ctcgaccacg acatcgaagt cgatcacgcc
    13441 tgcgaaaaat cctgcgcctg caccacctgc cacgtcatca tccgcaaagg tttcgacagt
    13501 ttggaagaac cgaccgaatt ggaagaagac ctgctcgatc aggcttgggg tttggaagcc
    13561 gattcgcgcc tgagttgtca ggcggttgtc gccggcgaag atttgattgt ggaaatcccc
    13621 aaatatacta tcaatcatgc ccgagaggag cattgacgca atgccgtctg aaacatcatg
    13681 cggttcagac ggcatcggat atgcataagc cggagcagaa gggtaatccc gtatttgata
    13741 agggtaaacc ggagtttagt ttggacggca gataaaccgt tgtcgggtaa ttttcagagg
    13801 tgtttgtgtc tgatttgccg catattgctc tattttggct ttcgtattga tcatactcag
    13861 gtttcgaccg ggcttttcgg atagcttttt caatattgat tgctgctgcg ttttatcttc
    13921 cggatattct tgctgttgca gtttcgcttc cttcaatcca aaaagagcga tagttttatc
    13981 ggcaatatcc agatagtatt gttcaagttg ggtaggattg gcagtctcat tttcaactgt
    14041 tacggaaatc tggtcataac ggtttgccat acgttcggca atttgggtat aaatatgcca
    14101 ccgcttcata cgtattgttg cggcatcgga atcagcccgt gcaccgtcta ggacaataag
    14161 ccctctttgg ttttgacagc ggatgcaaag tgtcagccgg gaaagggcat tttgttcgtc
    14221 gagcatctga tacagtctgc ggaccaatag gatcagacgg tcaaattccc ctatcttgga
    14281 aaggaaatca ggattgtccg gagcggtata aaccagtttg gaaagtttgg cggttaaggc
    14341 attattcatt cagctatcct tggcgggtat acatttggaa catgttctat acggttgaaa
    14401 gaccggaaaa tacaggaaaa ttaatatgaa atggacagac acacaacgta tcgctgaaga
    14461 cctttacgac ctgcacggcg aaaccatcga tcccaaaacc gtgcgcttta cccaactgcg
    14521 cgacctgatt atggcattgc ccgaatttga cgacgacccc gcccgttgcg gcgaacgcat
    14581 cctcgaagcc gtgcagcagg catggataga cgaggcagaa taagtttcgg gaatgccgtc
    14641 tgaaatacgg cggtacgcgg ttcgtgcttc tgtttgcagt gggaacggtt ttaccagtct
    14701 ccttttttca gcctatccag ttggcggcgg tcgcgcttgg tcggtctgcc gtcgggatgg
    14761 gcggaagtga tgcggctgaa ttggtcgagc tgtttgcgct cttccctcaa tgctgccgtt
    14821 tttgcgtctt cttcatacag aagccgcgcc tcggatgccg ggcggcgttg gtggttcaaa
    14881 cctttaacct tgattttata gggaagggaa ttgagcgtca ggtcgataat atcgccgatg
    14941 tctatggttt tactgttttt gaccttcgag ccgtttactt gaaccctacc cagttcgatg
    15001 tgcttttgcg caagggaacg ggtcttgaaa aaacgtgccg cccaaagcca tttgtccagc
    15061 cgcatggcgg aagaatcgtg cttgtctttc atacgatttt gtttgaaata attgaatttg
    15121 tttcaagttt agcataagat acgccgccta taactagtat atatgcacta atccactgtt
    15181 ttccatgctg tccgaacaca aaaagagggt gtggaaaagc cgttttggac aataaattaa
    15241 ctgcggaata tgcacaaata gcgtatgata gcggcagaat ctgttgatga gagcttcatt
    15301 ctatgaaacc tgtttttttg gattttgaac aacccatagc cgaactgacc aacaaaatcg
    15361 atgagctgcg tttcgtccaa gacgagtctg ccgtcgatat ttcggacgaa atacaccgtt
    15421 tgcagaaaaa aagcaacgac ctgaccaaat cgattttcag caaacttacg cccgcccagg
    15481 tttcacaggt ttcccggcat ccgcagcgtc cctatacttt ggattacatt gatgcgctgt
    15541 ttactgattt tgaagagctg cacggcgacc gccactttgc cgacgatcat gcgattgtcg
    15601 gcggattggc gcgtttcaac ggacaaagcg tgatggtcgt cgggcatcag aaagggcgcg
    15661 acaccaaaga aaaaatccgc cgcaacttcg gtatgccccg tcctgaaggc taccgcaaag
    15721 ccctgcgcct gatgaagacg gcagaaaaat tcggcttgcc cgtcatgacc tttatcgata
    15781 cgccgggcgc gtatcccggc atcggcgcgg aagaacgcgg gcagtcggaa gccatcggca
    15841 aaaacctgta cgaactgacg cgcctgcacg tccccgtttt gtgtaccgtc atcggcgaag
    15901 ggggctcggg cggtgcgttg gcggtcgccg taggcgatta cgtcaatatg ctgcaatact
    15961 cgacctattc tgttatctcc cccgaaggct gcgcttcgat tttgtggaaa accgccgaaa
    16021 aggcggcgga tgcggctcag gctttgggca ttactgctga ccgcctgcaa aagctggact
    16081 tggtcgatac cgtcatcaaa gaaccattgg gcggcgcgca tcgggatttt gggcaaacca
    16141 tgaaaaacgt gaaagccgtt ttggaaaaac aactgcacga agcgcaaagc atcccgcttg
    16201 ccgatttgct ttcgcgccgt ttcgaccgca ttatggctta cggcaaattt tcggaacaat
    16261 aattcaggta gaacaagcag caagcagttt gtctgaaact gcttgctttt tctttatcgg
    16321 gacggaaccg tgctgacttt agatgcgttt gagcaatgct tgaaggattg ttttcctcaa
    16381 ggtctgaatg gaaaaaaaac agcggtggca ttaagcggcg gcttggattc cgtcgttttg
    16441 ctgcatctgc ttgtccgcgc cggaaaaaag ggcggtttta ttccggatgc attgcatatc
    16501 catcacggct tgagtccccg tgccgacgat tgggcagatt tctgccaaaa ctattgcgat
    16561 atgctcgggg tggggctgga aacggttaag gtctgcgtgg aaaaaaacgg tttgggcatc
    16621 gaggcggcgg cgcggcaaaa gcgttatgcc gcgtttgccg aaaaaggctt tgacgttttg
    16681 gcgttggcgc accacaggga cgatcaaatc gaaaccttta tgctggcagt cgctcgcggc
    16741 ggcggtttgc gcgctttggc ggctatgccc accgtccgcc cttttgggga aaaaggcatc
    16801 atctggcggc ctttgctgcc tttttcgcgc caagacatat gggattatgc ccaaaaacac
    16861 ggtttgccga atatcgagga cgaaagcaat agcgatacgg cttatttgcg aaaccgcttc
    16921 cggcaccgta ttttgcccga actttcggcg cagattcccc atttcgggcg gcatgtactg
    16981 aacaatgtcc gcgctttgca ggaagatttg gctttgttgg acgaaatcat cggtcaggac
    17041 tgccgttggg tctgtgagga aggcagtttc gatacggtgc gttggcaggc gttttcccca
    17101 cgccggaaaa cccatatttt gcggtatttt ttgaaggaaa acggcatccc catgccgaat
    17161 cagaatgccc ttgccgacat tgcccgggtt ttgacggagg caaaaaccgg acgttggaac
    17221 ttgcaaggct ttgaattgca tcattatgca ggcaggctgt ttgtgttccg actggaaaaa
    17281 acggataaac tgcggttttt gaaagacagg cagataagcg gaaatttaag ggaaatattg
    17341 acggggcagg gatttgtttt aaaacgtcat ccgtttgggc ttcctgagca tcttttggag
    17401 caggacggaa ttttgaggac ggtagcggta tcggatacgt tggctgtcgg cggcatccat
    17461 aaggatgtga aaaaaatcct tcaggggaaa cgggttttgc ctgtcctgcg cccaatttgg
    17521 ccgcttgttg ccgacagcgg aaaccgtcca ttggcgttgg caaactgttg tgcggatttt
    17581 caaatctcgg tttcagacgg cattttgccc ttccatcctg actttcccat tttattttga
    17641 taatatcgca aacagatttc ggcggcgttc agtcgggtat tgtccggttg catatttcta
    17701 aaaggcttgt gaagtgagac acatcagttc gaccaataat gaacacatcc ggcacctgca
    17761 ccgcctgttg tcgcaaggaa agttcagacg gcaatacgcc caaaccgttt tggagggcgt
    17821 gcacctgctt caggttttcc tgcaatccgg cgggatgccg gtcggggtat atattcccga
    17881 gggcaaaatg ccgtctgaag aaatccgcag gctgagggcg gttgtgccgg aaggcaggat
    17941 tttttccgtt tcagacggca tattgaaaaa aatcagtagc ttgagttgtg cagacgatat
    18001 acttgcactg attgatatcc cattgggcgg aaccttgccg gacaaaggcg actgtgtggt
    18061 tttggacggc gtgcaagatc cgggcaatgt cggcaccgtc ttacggagtg cggcggcggc
    18121 aggggtaggt acggtcgttt tgggcagggg ttgcgcggac gcgtggtcgc ccaaggtatt
    18181 gcgcgcgggg atgggcgcgc atttcttgtc gggcatttat ccgcaggcgg atttggaaat
    18241 atggttggcg cgctataaag gccgtgtgtt tgccaccgcc ttgcgcgagg aaaagcaggc
    18301 ggttttgtac ggcgaagatt tgtgcggacc gacagcctgg gtgtttggca acgaaggcgc
    18361 gggggtcggt aaagcggttt tggacagggc ggacaagtgt gtcaggattc cgatgcacga
    18421 tgcaaccgag tctttaaatg tcgcgatggc ggcgacaatc tgcctgtttg aacagatgcg
    18481 gcagcggtcg gcgtattgag gaaaagaaat gccgtctgaa aaaatctatt acggcgtatt
    18541 gattttctta tgtatcgctt ctatgctgct gtcgccgttt ttttatgcgg gtgctttgaa
    18601 gcccaagaag gcggcattgc ggaaggacgg gcagtggaaa ctcatcttat tgtccaatac
    18661 cgtggcggcg gcggttttgg cttgggtgtg gtggaaatgg ttttgacaga tattgctcaa
    18721 aatcgtgcta atggaatccg aacaaataaa gaatttggta aaaaatttgt taaatcaacg
    18781 aattaaagtt ttgtggaaaa caaaacagct ctaagcaaat agggcgtttg tcggtaaata
    18841 cggaagagtt gcggcattat cgggcatctt taacaagtag tgccgtcttg gcaggcaatc
    18901 ggtttttatg ggcagcttgc aaaatcgcgg atataaaatt gcgaatcggt taaagtgtgg
    18961 ggacgctatg aaaaattgcg aattttttta tgacccgaca agggcaatct atgatagcgg
    19021 tgcagattac ttaactaggg aaaaacatag attagtcgta attgcaaata gtgcttgggg
    19081 gctattactt aatttatctt gttattatga cgaggttttg gaaaagcgga aaataccgtt
    19141 cggcaaacag gaaattgatg acgatatgga caaagtgtcc gcccttaagc ggaagtttaa
    19201 agatatttct gaaatcaaag taggggatgg ttgggaatac ccgttcaatt atgagcaggg
    19261 aatgaaagaa ttagatgaag tgctattgaa atacattccc ttttttgaag aagaacgata
    19321 aaggaggttg atatgcgcgt atctaaaata attggaagta tgttgcttgt tacagcggtt
    19381 cagaccgtat tttcggcaaa tgtttacgcg tgccgccata atggtaaaac cagttacagc
    19441 caaactccgg gaaaacattg taccaacgcg ggtttggggc gggatcgggt gtacagttcg
    19501 gttagaccgg cagtaaaaga cagggcggaa gacgcagggg tcggcgatta ttcggacacg
    19561 gtgagggacg aacacgtcca aaatccgaga gagaatacgc ataaggatgc ttagaatacc
    19621 ggtgcaaaga cgcattgatt gaaaccgaat cagccatgac ggcgttgaat aatagaattt
    19681 gaacgattag ggaactctga tgaaacacat ccacattatc ggtatcggcg gcacgtttat
    19741 gggtgggatt gccgccattg ccaaagaagc agggtttgaa gtcagcggtt gcgatgcgaa
    19801 gatgtatccg ccgatgagca cccagctcga agccttgggc ataggcgtac acgaaggctt
    19861 cgacgcggcg cagttggagg aatttaaagc cgacgtttac gtcatcggca atgtcgccaa
    19921 gcgcgggatg gatgtggttg aggcgatttt gaaccgcggg ctgccttata tttccggtcc
    19981 gcaatggctg gctgaaaacg tgctgcacca tcattgggta ctcggtgtgg cggggacgca
    20041 cggtaaaacg accaccgcgt ccatgctcgc atgggttttg gaatatgccg gactcgcgcc
    20101 gggcttcctc atcggcggcg taccggaaaa cttcagcgtt tccgcccgcc tgccgcaaac
    20161 gccgcgccaa gacccgaaca gtaaatcgcc gtttttcgtt atcgaagccg acgaatacga
    20221 caccgcgttt ttcgacaaac gctccaaatt cgtgcattac cgtccgcgta ccgccgtgtt
    20281 gaacaatcta gaattcgacc acgccgacat ctttgctgat ttgggcgcga tacagaccca
    20341 gttccaccac ctcgtgcgca ccgtgccgtc tggaggctta atcatctgta acggacagca
    20401 gcaaagcttg caggatactt tggacaaagg ctgctggacg ccggtggaaa aattcggcac
    20461 cgaacacggc tggcaggtcg gcgaagccaa tgccgacggc tcgttcgacg tgttgcttga
    20521 cggcaaaacg gccggacgcg tcaaatggga tttgatgggc aggcacaacc gcatgaacgc
    20581 gctcgccgtc attgccgccg cgcgtcatgt cggtgtcgat attcagaccg cctgcgaagc
    20641 cttgggcgcg tttaaaaacg tcaaacgccg gatggaaatc aaaggcacgg caaacggcat
    20701 taccgtttac gacgacttcg cccaccaccc gaccgccatc gaaaccacga ttcaaggttt
    20761 gcgccaacgc gtcggcggcg cgcgcatcct cgccgtcctc gaaccgcgtt ccaacacgat
    20821 gaagctgggc acgatgaagt ccgccctgcc tgtaagcctc aaagatgccg accaagtgtt
    20881 ctgctacgcc ggcggcgtgg actggaacgt cgccgaagcc ctcgcgcctt tgggcggcag
    20941 gctgcacgtc ggcaaagact tcgatgcctt cgttgccgaa atcgtgaaaa acgccgaagc
    21001 aggcgaccat attttggtga tgagcaacgg cggtttcggc ggaatacaca ccaaactgct
    21061 ggacgctttg agatagcccg ggcgatgccg tctgaaagcc cttcagacgg catcgtccgg
    21121 ctgcgcggca caaaggcgga aaaaccgttt gccccgtatt ttcaaacgcg ttacacttgc
    21181 cgccgctgtt ttcagccatt tgattacccg caaccgccgt cattgcgccg gcggtttgcc
    21241 tgtcagcgtc attgcgccgc tgtaaatacg aaagaacaca ttatgaccgt atcccccgtc
    21301 gccttgcgcc gtaagaccga gtgcaagcct catcccaccg cgcgctattg gaaaaaatgc
    21361 gatgtcgaag ccctgttcgg acttcccttc ctcgacctca tttaccaagc cgccgaaatc
    21421 caccgccaaa atttcaaccc gcgcgaaatc cagctttcca cgctgttgtc catcaaaacc
    21481 ggcggttgtc ccgaagactg cgcctattgt ccgcaatcgg cgcaccacaa taccaatctg
    21541 ggcaaagagc agatgatgga tgtggatgaa atcgtcgaaa aagccaaaat cgccaaatcg
    21601 cgcggcgcaa gccggttttg tatgggcgcg gcgtggcgcg gccctaaacc caaagacgtg
    21661 gagacggttt ccgcaatcat caaagccgtc aagggcttgg gtatggaaac ctgcggcacg
    21721 ttcggtatgc tcgaagaagg tatggcggaa gacttgaaag aggcgggctt ggattattac
    21781 aaccacaacc tcgacaccga ccccgaccgc tacaacgaca tcatccacac ccgccaacac
    21841 gaagaccgaa tggacacctt gggcaaagtc cgcaacgccg gtttgaaagt ctgctgcggc
    21901 ggcatcgtcg ggatgaacga aacccgcgcc gaacgtgccg ggctgattgc cagtctcgcc
    21961 aatctcgacc cgcagcccga aagcgtgccg attaaccggt tggtcaaagt ggaaggcacg
    22021 ccgcttgccg atgccgaaga tttggactgg acggaatttg tccgcaccat cgccgtggcg
    22081 cggattacga tgccgcaaag ttatgtccgg ctgtcggcag ggcgcagcaa tatgcctgaa
    22141 gcaatgcagg cgatgtgctt tatggcgggc gcgaactcga ttttttacgg cgacaagctg
    22201 ctgaccacgg gcaatcctga tgaggacggc gacagaatcc tgatggaaaa gcttaacctg
    22261 tatcccttac agtttgagct ggaaggcgag gtcgccgaag tggaaaaagc ctctgggatt
    22321 aaagtggatt attgacgatt gcaaaaatgc cgtctgaaac gcggatgccg tctgaagccc
    22381 gaaaaaaggc tttcagacgg catttccaat atttctttac cggcgcgtga tgttgccgtc
    22441 gggcgagaca tccagcccgt tcccgttggg gaaatcgctg cggttcagat aaataatccg
    22501 cccgataacg gtttttcagg gtcgattttg gggattttat cgtcggcttg ggtaataggg
    22561 atgatagttc cggaaataaa tttaccctgt ttgtcggtga taattttgaa aatcggcgca
    22621 atgccgctga tgccggaggt gttgattgcg ccgtaggtgg caaagttgcc gccgctgtag
    22681 gagatgaagc ggtcgcggta aagttcgacg gcgcgagtaa cgtgcgaccc ctgcccgaat
    22741 acgacatccg caccggaatc aacggccagc cgtgcaaact cgacgacgtt gcccctgttt
    22801 tccccataga agatttcggt atcgaacggc aggtgttccg cctgtttccc ttccgcgccg
    22861 ccgtggaaca tcacaatgac gatgtcggct ttctgtttgg ttttggtaat ccgttttcta
    22921 actttggcat aatcgttcag tttgacggcg gcaaggttgg gggcgaagga gacgaagccg
    22981 gatcttacgc cgtttttctt caggatggcg gtttcaaacc tgttttcgat gcccgaatat
    23041 ttgatgttca attcgtcaag gttcgccctt tatgccgttt ccgcaccgca aaccgccggg
    23101 gtcaagccct cggcgcatcc tgccggaacg gaatccccgt gctgccgatt gacggttcaa
    23161 accccgcgcc cgtttcaaat accggcgatg tggacggaca ggatgcgcct gacgaaaaga
    23221 cagccgatac cgtttccatt atcggcgtgg gcgacattat gctcggcagc aattatccgg
    23281 tcgattacct gcccgatacc aatattctga aaaacgtcga atctgccttg caagacgcgg
    23341 acattaccgt cggcaacctc gaaggcacgc tgtttgacga aggcggtacg ccgaaaaaat
    23401 gtgcaaaccc ccaaaatatg ctatgcattc cgaacgccct ccgcatacgg gcaatacctt
    23461 gccgacgcgg gattcgacta cctcagcttc gccaacaacc acagcaacga cttcggcgcg
    23521 caaggcatca cggcaacggc ggcgagcggc agctctttta catactcgat cgcgctaaag
    23581 ccgctgccga taacgaggcc aaaattgcgg aaaataccgc catcgcccag ataaatttgt
    23641 ccatcatcag acctttactg ttcagacgag acagcatttg ccgcacgttt tggggcttat
    23701 ctttcgattt gcgctacgtc gcgcaccgcg cctttgtcgg cggaagtcgc catcgcgccg
    23761 taagctctta atgcggcgga gacgtagcgg tcgcggtttt taggcttcca tgctttgctg
    23821 ccgcgcgctt ccatttcggc acggcgtgcg gcaagctctt cgtcggaaat ggcaaggtgg
    23881 atgctgcggt tggggatgtc gatttcgacg gtatcgcctt cgtgtaccaa accgatcgcg
    23941 ccaccttccg ccgcttcggg cgaggcgtgt ccgatggaca aacctgatgt gccgccggag
    24001 aagcgtccgt cggttaagag agcgcaggct ttgccgaggc ctttagattt caggtaggaa
    24061 gtcggataca gcatttcctg catgcccggg ccgcctttcg ggccttcgta gcggatgatg
    24121 acgatgtcgc cggcgacgat ttggttgccc aaaatgcctt ctactgcgtc ttcttggctt
    24181 tcaaacacgc gggcgcggcc ggtgaatttg aggatgctct catccacgcc tgcggttttt
    24241 accacgcagc cgcgttcggc gatgttgccg aacaagaccg ccaaaccgcc gtcttgcgag
    24301 taggcgtgtg ccacgtcgcg gatacagcct ttttcgcggt cgaggtcgag ggttttccac
    24361 atacggtttt gcgagaacgc ttgggtggtg cgtacgccgc cgggcgcggc tttgaagcgt
    24421 tcgatggcgc gggtgttttc agggttggtt acgtcccatt tttcaatcgc gtctttcagg
    24481 gtcagcgcgt gaatggtgta cacgtcggtg tgcagtttgc ccgctttgtc caattctttc
    24541 aggatggcga agatgccgcc ggctcggtgc acgtcttcca tatagtagtc gtggttgttg
    24601 ggcgcggttt tgcagatgca aggcacaacg cggctcaggc ggtcgatgtc cgccattttg
    24661 aaatcgacac cggcttcgtt ggcaacggcc aacaggtgca aaatggtatt ggtagagccg
    24721 cccatggcga tgtccatggt catggcgttt tcaaacgctt ttttggtggc gatgctgcgc
    24781 ggcagtacgg tttcgtcgtc ttgctcgtaa tagcgtttgg tgatttcgac aatcatacgg
    24841 cctgcttcga ggaacaattc tttgcggccg gcgtgggtcg ccaaatacga accgttgccg
    24901 ggcagggaaa ggccgagtgc ttcggtcagg cagttcatcg agtttgccgt aaacataccc
    24961 gaacacgagc cgcaggtcgg gcaggcgttt tgttcgactt cctcgacttg ccggttgctg
    25021 acattgtcgt ccgccgattc gatcatcgcg tcaatcaagt ccaaacggcg ttcgggttgg
    25081 atgtttgcca cgccgataac tttgcccgct tccatcgggc cgccggagac gaagatggtg
    25141 gggatgttca ggcgcatcgc ggcaatcagc atgcccgggg tgattttgtc gcagttggaa
    25201 atgcacacca gcgcgtcggc gcagtgggcg ttgaccatat attcgatgga gtcggcaatc
    25261 aaatcgcggc tgggcaggga gtacagcatg ccgctgtgtc ccatagcgat gccgtcgtcg
    25321 atggcgatgg tgttgaattc tttggcgatt gcgccggctt tttcgatttc gcgggcaacc
    25381 agctggccca tattgtgcag gtggacatgg ccgggcacga attgggtgaa ggagttggca
    25441 acggcgatga tgggcttgcc gaagtcggtt tccatcacgc cggtggcgcg ccacaatgca
    25501 cgtgcgcccg ccatattgcg gccgtgggtg gaggttttgg agcggtattc tggcatagtg
    25561 tgtttccttg tgcctatacc gtctgaaaga cagggctgtt tcagacggta tcgggtacgg
    25621 ttttttagag tgggaaaaga gggtatttta taccaagtat cggaattttg cgggattgaa
    25681 acggcgtgcg gcaaaaaaga aaatccccgc aggaatgcgg ggacgggttc aggcgcgggc
    25741 aatcgcgacg gctttggatg cgtcccaaaa atcaacgggg gcatttaata cgggtttgac
    25801 gatgcccgtc cgtatggcga aatcgccgaa accttcgccg atattgcgtt ctgccgccca
    25861 tttgccgatc aggtcgtcca attcggcaag gatttcgggc agggtgatgt tttctttgta
    25921 aaggcggggg atgcgtacgc cttcacggtc gccgccgata tggaggttgt agcgtccgac
    25981 ggctttgccg accagcccga tttccgccaa cattgcccgt ccgcagccgt tggggcagcc
    26041 ggtaatgcgg gtaacgatgt agtcgtccga cgtgccgtgt ttcgccataa tcttatccag
    26101 atcgtcgatg aagtccggca gcacgcgttc ggcttccgcc attgccaagg ggcaggtcgg
    26161 aaaggaaacg caggacatcg cattttcgcg cagcttgctg acatcgttgc ggattaatcc
    26221 gtatgttcgg gcaagttctt cgatttttgc cttgtctgct tcggcaacat ttgccacgat
    26281 aaggttttgg tttgcggtaa tgcggaaatc gcctttgtgg attttggcga tttccaacac
    26341 gccggtcaga agctgtttcc cgccttcgtc aaccaaacgc ccgctttcga tgaaaagggt
    26401 taaatgccag ttgccgtcta tgcctttcac ccagccgatg cggtcgccgc gcccggtaaa
    26461 tttgaacggg cgtacgggtt cgaacggcat acccatacgg cgttcgactt ccgcgcggaa
    26521 gttgtccaag cccatatttt gaatggtgta gcgggtgcgg gcgtttttgc ggtcgctgcg
    26581 gttgccgaag tcgcgctgcg tggttaccac cgcttcggcg gccttcagcg cgtgttccgg
    26641 aggcacgaaa cccagttcca gtgaaatgtt cggataggtt ttggtgttgc cgtgttccat
    26701 cgaaagcccg ccgcctgcca aaacattgaa gccggcaagc tgtccgttac cgtctgaaac
    26761 ggcgacgaaa tccaaatcgt tgccgtagca gtccacatcg ttcaagggcg ggatgacgac
    26821 tgcggttttg aattttcgcg gcagataggt tttgcccaaa atcggctcgt cttcttgaag
    26881 gaagtcgtcg gaactttgaa cttttttgcc gtccacccac acatccagat aaccgcgcgt
    26941 gcgcggcagc aggtgttcgg aaatcttttt cgcgtattcg taagcctgcc ggtgcagttc
    27001 ggactcgatc gggttggacg tgcaaagcac gttgcggttc atatccgccg ccgtggcgat
    27061 ggaatccaaa cccagtttgt gcaagaggcg gtgcatcgtc tgcaacttgg ctttcggcac
    27121 gccgtgaaat tggaaggttt gccggttggt cagccggatg gagcggtaat gactgttttc
    27181 ccgggcaaat ttgtccagtt ctatccattg ggacggttta atgatcccgc ccggcagccg
    27241 gcagcgcaaa agcataaatt tcaagggctc gagttttgcc tcggcgcgtt cggcgcggat
    27301 gtcgcggtcg tcctgctcat acataccgtg gaagcggatg agttggaagt tgtcgccttt
    27361 gaagccgccc gtgagcgggt ctttcaaatc gtccaaaatc gtgccgcgta aaaaattgct
    27421 ttcggttttc agacgttcgt tgtcggatag cggtttttct tgccacgcca aaccttttgt
    27481 cttggtctgt acggtcattt tgtgttcctc ccgattatat ttaatcaata aacatcacgc
    27541 tgatagcgtt tttcttcgcg cagcatatcc aaatattctt ctgcgccctc ttcgtccaaa
    27601 tgtcctgccc cgataatcac atccagcaag gcggcttcca cgtcttttgc catttttgcc
    27661 gcatcgccgc acacatagat atgcgcgcct tcctgcagcc attgccaaag tccttccgcc
    27721 tgttcgcgga ttttgtcctg cacatagatt ttttcttcct gatcgcggga ccaggcgaaa
    27781 tcgtacctgt gcaggaagcc gtctttggca aactgctgcc attcggtctg atagaggaag
    27841 tcggcggcaa aatgcggatt gccgaaaatc agccagtttt tgccttccgc attttctgcg
    27901 gcacgttgtt ggacgaaagc gcggaacggt gcgacgccgg tgcccgagcc gatcatcaca
    27961 atcggcttgc ggctgtcttc gggcagcctg aagccgtcgt tgcgttccac aaacacgcgc
    28021 accgtgccgt cctcttccag ccggtcggca aggaaacccg atgcgccgcc caccctggcg
    28081 cgcccttcgt gttcaaaacg caccgcgccg acggtcaggt gcacttcgtc ccccacttcc
    28141 gcctgcgacg aggaaatcga atacaggcgc ggcgcaagcg ggcgaagcag gccggcgaat
    28201 tgttccgccg tcagttttgc cgggaagcgg tgcagcacat cggcaatcgg cgtgctttgc
    28261 acaaagcctt gcaaaacggc gttgtcggca gcaatacggt cgagttcgtc atcatcggcg
    28321 aacggggcat agcctttgac aaaggcgggg gtgttttgcg tgagttcaaa atgggataac
    28381 agtgcggagg caaccggcag ggtttttccg cccgcctgta tttccgttgc cggatcgatg
    28441 ccgagcaggt ctaggatttc cctgaccagt gccggatcgt tgtcaaacca aacgccgagc
    28501 gcgtcgcccg ggaggtagtg caaatccgaa ccgctcaaat cgatttcgat gtggcgcacg
    28561 tctttatcgg attggcgggc ggtgattttc tgattggcca gcagggcggc gggaaagggg
    28621 tctgccttgc agtacctgcc atccggtgcc gtctgaaggc cggcgggggg cgttgtctgc
    28681 ggcgcgggcg ttgcccggtt ttttgcggct tcttctttta agcgcgcgac aatgcggcct
    28741 gtccatccgt ctgcggaggc ggtaaagtcc aaatccgcat caacgcgttc gagcaggcgt
    28801 ttcgccccca attcttcaaa acgtttgtcg aaatctttgc ccgcccggca gaaattcgga
    28861 taggagctgt cgcccaaacc cagtacggca aattggagtt tgtccaattt cggggctttt
    28921 ttgccgttca gcagtttgtg cagcacgacg gcttcttccg gcggttcgcc ttcgccttgg
    28981 gtggaggtaa ccagcagcag gcggcgttcg ccggagatgt ttttcgcctt atagtctttc
    29041 agttcggcgc gcctgacttg gatgccggcg gcttccaggc tgtccgccgc tttgtcggca
    29101 acggatttcg cattgccggt ttgcgaggcg gaaaggacgg ttacggaaaa aggttctgcc
    29161 gccggcaatg ccgtctgaag cgcgggcagt cctgcagatg ccccgtttcc tgcttttgcc
    29221 caagcgtagc cggacagcca cgcccattgt gccgcgtcca gcaccgacag gagctgcgtg
    29281 atttcgggcg gcagaggcgg taatggcgga tttgtgttct gcatatcgtg ttcactcata
    29341 aaatcatacc tgccgcaaca gtgccgtatg tcgcttcgtc tatcaggata aacgaaccgg
    29401 cggcggtgtt ttccgcataa ggcgttgccg taacgggttt ttgaaggttg atgcggactt
    29461 tggcaatgtc gttcatcttc aaggattccg cgccggcctc ttgttccagc gtgcggacat
    29521 ctaaaacgct ttcaatttcc ccgacttttg ccggcacggt ttgcgtgccg tgcttgagca
    29581 ggtatttgcg cgcggtgttg agcggacgtt cgtcaaacca gcaaagcgtg gcttccagat
    29641 gtttttgcgg ggcgagcggg gaatttttat cgacaaaaag gtcgccgcgc gaaacatcga
    29701 tgtcgcggtc cagccggagg gttgccgcct cgccggcaaa agcctgcgcc acttcccctt
    29761 tcggcgtgat gatttcggac acttcggcgg tcagcccgtt cggttcgatg cggacggttt
    29821 gcccgacggc gaccgaaccg cgttcgatgc gcccctgata gcctcggaaa tcatcggcct
    29881 tgtcggcatc ttggcggacg accagttgga cggggaaata aaaatcggca gcggaacgac
    29941 cggtttcgtc cgcccccggc aggttttcca agatgaccag cagcggttcg ccccgatacc
    30001 acggcatatt gccgccgggg taaacgaggt tgtcgcccaa gagtgcggac accggtacga
    30061 aatgcacgtc tttcaaaccg agctgttcgg caagtcggcg gtatgcctcc acaatggcgt
    30121 tgaatttgtc ttcgctgtaa tccagcaggt ccattttgtt gaccgccacc acaatatgcg
    30181 ggcagttgag ttggcggagg atggcggaat ggcgtttggt ctgcggcaga agctgcaagg
    30241 gctgcgcgcc gaaatccagt tgggatgcgt caaccagcac gactgccgcc gaagcggtgc
    30301 ttgcgcccgt aaccatattg cgcgtgtatt gttcgtgccc cggcgtgtcg gcgatgatga
    30361 atttccgttt cgccgtggaa aaatagcggt atgccacatc gatcgtaatg ccctgttcgc
    30421 gttcggcttc cagtccgtcg gtcaggatgg agaagtctat ggtttctttc aaacctttgc
    30481 ttttgccgga ttccaaggtt ttgatttggt cggacagcag ggctttgctg tcgtagagca
    30541 gccgtccgat cagggtgctt ttgccgtcat cgacgctgcc ggcggtaatg aagcggagcg
    30601 gggcctggtg ttgtgccgtc atattttctt cctcatatct gcttaaaggg tttttgaaat
    30661 ttagaaatag ccttcttttt tgcgtttttc cattgccgcc tcgcttgcct gatcgtccag
    30721 ccgggtcgcg ctgcgttcgg aaatgtcggt aactgccgtt tccctgataa tctccgtcgg
    30781 cgtggacgcg gtgctttcta ccggacaggt gcagctgatg tcgccgacgg tgcggaagcg
    30841 gacatcaagg atttcggagg tttcagacgg cattttcggg gtgagcggcg ttacagggac
    30901 cagcagcccc ctgcgtctga ccacttcgcg cctgtggctg taataaatcg gcggcagctc
    30961 gaggttttcg cgggcgatgt attgccagat gtcgagttcc gtccagttgg aaatcgggaa
    31021 gacgcgcata ttttcgcctt tgtgcagcct ggtgttgtac agcgaccaca gctcggggcg
    31081 ttgcgccttc ggatcccatt gtccgaactc gtcgcggaac gagaaaatcc gttctttggc
    31141 gcgggctttt tcttcgtcgc gccgcgcgcc gcccatcagc gcgtcaaagc cgtttgcctc
    31201 gatggtttcc aacagcgtaa ccgcctgcgc cgcattgcgc gaatcggttt ctttgcgtaa
    31261 aactactgtg cctttagcga tggagtcttc cacgcgcccc actatcaggc gggcattgag
    31321 ttttgccgcc tgcgcgtcgc ggaaggcaat cacttcgggg tagttgtgcc ccgtgtcgat
    31381 atgcaccagc gggaagggca gtttcaccgc ccggctgccc agccggaagg ctttgcaggc
    31441 gagggcgagc aggaccacgg aatctttgcc gccggaaaag agcagggcgg ggttttcgca
    31501 ttccgccgcc acttcgcgga tgatgtggat ggattcggat tccaaccagt cgagttgggc
    31561 gttgttcggt tcggttttcg tcataccata ttccttattt cttctgtctg atatttatga
    31621 attatttgtg cagcccgcat tctttgctgt ttctgccttc ccaccaccac cgcccggcgc
    31681 ggatgtcttc gcccgccttg acggggcggg tgcaggggtc gcagcctatg ctgggaaatc
    31741 cttgccggta caaatcgttg taaggcacat tgttggcgag gatgtatgcc cacacgtcgt
    31801 gttccgacca gtcgaaaatc gggttgtatt tatcgatgcc gcgcccggca tcatattcgg
    31861 caaacggcag ttccgtgcgt gtggcggact gttcgcggcg ttgcccggta agccaggcat
    31921 ccgccccggc aatggcgcgg tcgagcggtt cggtttttcg gatgcggcag cattcgcggc
    31981 gcgcttcaac gctgtcgtaa aaggcaaacc tgcctttgct ttccacataa cggtcggcat
    32041 cttctcgaac cggccggaaa cgctttatcc gcaaatgggg atatgcgcgt ccgagcctgt
    32101 ccagcaggtt tagggtttcc gtgtggagca gccccgtatc caaggtaaaa atgccgatat
    32161 tgaggttttc gccggcgata aggtcggtaa tcaccatatc ttctgccgca aggctgctgg
    32221 caaaccgtgc atcccggtgg ctgccggcaa tccggtgcag gcgttgtttg agggtttccg
    32281 ttttttccgc aagggcggtt tcgccgccgg atccgatatg cggtatctgc cacagggcgg
    32341 gtttgaacag tgtcgtttcc atttttcccg ccttatgccg cccgttgtcc ggcattcagt
    32401 ccgcccaatg cgggatacgc ctgcccgacc cggttttctc cttcgccgtt ttcaccgaac
    32461 caggcgagtt tttcgtgcag ccccaccact tcgcctatga caatcaatgc cggattcggc
    32521 gcggtttcgg cgagttcggc aaggttggcg agcgtgccgg ttgcggtttt ttgagccggc
    32581 agcgtgcctt ggctgataac ggctgccggc gtgtcgggcg agcgtccgtg ctgttgcagc
    32641 cgttcggcaa tcagggcggc tttgagcgca cccatataaa tcaccaaggt ctggcggctg
    32701 cgggcaaggg tctgccattc gatgtcgggc gcatccgcct tgcggtggcc ggttacgaaa
    32761 accgcacttt gggcataatc gcggtgcgtg agcgggatgc cggcataggc ggtcgcgccg
    32821 acggcggcgg taatgccggg gacgaccgaa aacggaatct gatggcgtgc caaggtttcc
    32881 aattcttcgc cgccgcgtcc gaacacgaaa gggtctccgc ctttcaaacg caccacgcgc
    32941 ctgccttcgc gggccagcct gaccataagc gcattggtgt cctcttgcgg ggtgcggccg
    33001 ccccgggcgc gcttgccgac aaaaatccgt tccgcatcgc ggcggacgag cgacagtatg
    33061 ccgtctgaaa ccagcgcgtc gtaaagcacc acgtctgcct gctggatttc ctgcagccct
    33121 ttgagcgtca gcagccccgc atcgccggga cccgcgccga ccagcgagac ggagccgcct
    33181 tgatcatttt gacgactttg ttccaattgg cctgccaatt cccgttcggc aagggtgttt
    33241 tgccggtttt tgacgagggc ggcgaaacgt ccgttaaact gcttttccca aaagcggcgg
    33301 cgttcggtaa cggatttcag tttgcccttg acggcatcgc gccatcttcc ggagatttcc
    33361 gccatatcgc ccaaagacgg cggcagcagg gcttccagtt tttcacgcag caaacgggcg
    33421 aggacgggcg cgctgccgga gctggaaacg gcaatttgaa tcggattgcg attgataatc
    33481 gaaggaaaaa taaaactgca ataatcgcga tcgtccacca cgttgaccgg tttttggcag
    33541 ctttcggcaa gctggaaaac gcgccggttg agggcttggt cgctgcttgc cgcaatgatg
    33601 aggaaaactg tgcggatgtg ttcggcacga aattcttcgg caagccacag gattttgttt
    33661 tctgccgcca gcgcacttaa ttcagcattc aactgatttg caacaaccct gacttgcgcg
    33721 ccggcatcca gcaacaggct gattttgcgc gcggcgaccg aaccgccgcc tacgaccaat
    33781 acggggcggc cggcgaggtt ggcgaaaatg gggaaataat tcactggcga actcctttgc
    33841 tgtttgcacg caccttgttt ccgatacggt gcgtcgcggc atttttgtcg gaatgcgggt
    33901 cattttagac aaaaggattt tcccagttaa ataataaaaa ggcatttgtt agaagctgaa
    33961 agctatatga gggcggctgc ggatgcggcg gttttcc
//
LOCUS       DAWGNT010000003        28746 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.003, whole genome shotgun sequence.
ACCESSION   DAWGNT010000003 DAWGNT010000000
VERSION     DAWGNT010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 28746)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28746)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28746
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.003"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            141..1538
                     /gene="aspA"
                     /locus_tag="WHR98_000082"
     CDS             141..1538
                     /gene="aspA"
                     /locus_tag="WHR98_000082"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEZ2306829.1"
                     /translation="MTVRIEHDLLGDREIPAEVYWGIHTLRAIENFKISTQKISDVPQ
                     FVRSMVMVKKATAQANGELGAVKPEIAAAIEKACDEVLLNNRCLDQFPSDVYQGGAGT
                     SVNMNTNEVIANLALEALGYEKGRYDIVNPMDHVNASQSTNDAYPTGFRLAVYYSIGE
                     LLDKLVVLKNAFAAKAEEFKDVLKMGRTQLQDAVPMTTGQEFQSCQVLLEEEILNLDR
                     TRQLLLEVNLGATAIGTGVNTPKGYAELVVKKLSEVSGLPCKLTENLIEATSDCGAYV
                     MVHGALKRTAVKLSKICNDLRLLSSGPRAGLKEINLPELQAGSSIMPAKVNPVIPEVV
                     NQVCFKVIGNDTTITFAAEAGQLQLNVMEPVIAQCMFETISLLGNAALNLSEKCVKGI
                     TVNREICERYVFNSIGLVTYLNPYIGHHNGDLVGKICAQTGKGVREVVLERGLLSEEE
                     LNRILSPENLMNPHL"
     gene            complement(1610..2485)
                     /locus_tag="WHR98_000083"
     CDS             complement(1610..2485)
                     /locus_tag="WHR98_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEZ2306830.1"
                     /translation="MAYLLISIVFSVSVSILLKMARKKKIDIAQAVAVNYVVAVILTL
                     LVLKPDIGNIGAFLPTWPLFAALGVLLPSVFVIMGKSVEAAGIVKSDAAQRLSLFLPI
                     VAALTLFGEKLSEGKLIGLCLAFAALFCLLWKHSGGKKSGSAWRQAALLLGVWAGYGI
                     IDILFKQLAKSGTAFAGNLLVAFVLAGVLMFACLFAKSVRWRVESVVGGILLGGLNFM
                     NIVTYITAHQMMKDNPTLVFAGMNIGVIVLGTLSGALFFKEKINTINTAGIVLALCSI
                     ACLFYWAEVKALFGI"
     gene            complement(2487..3209)
                     /locus_tag="WHR98_000084"
     CDS             complement(2487..3209)
                     /locus_tag="WHR98_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEZ2306831.1"
                     /translation="MDKDLYAVLGVSPQAGADEIKRAYRKLAMKYHPDRNPGNPKAEE
                     KFKEIQRAYDTLSDLSKRMQYDASFRRHEERGRQEEAFRREQARREQFYREQMRREQA
                     FRQAFERQASRSCHAYEPSGGGSGRNYVLAAYILFGLGAIMLFMPIVGVIFAYMPIVG
                     VILAYMKRNSLDSIVYAAHTEYLIKTFWRTFWLYILGALTALLGIGVLIIIATNVWYF
                     YRIIAGFIRFNGGRAVAPEKWI"
     gene            complement(3232..3711)
                     /gene="ybaK"
                     /locus_tag="WHR98_000085"
     CDS             complement(3232..3711)
                     /gene="ybaK"
                     /locus_tag="WHR98_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HEZ2306832.1"
                     /translation="MSKHTYPITPAVRVLRENGIEFEPFTYAYEEHGGTAQFARLFGK
                     DEHLVIKTIVLQDENGKGLIVLMHGDKQISTRNLARHLGAKHIEPATPVQANKWTGYL
                     VGGTTPFGIRTKLDIYVEQSVMDLETIYINGGKRGFIIGIRPGDLNILNPKTIQAAV"
     gene            3786..4148
                     /locus_tag="WHR98_000086"
     CDS             3786..4148
                     /locus_tag="WHR98_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEZ2306833.1"
                     /translation="MDIRYFGTTPRYSEAVGANGLIFLSGMVPENGETAAEQTADVLA
                     QIDRWLAECGSDKAHVLDAVIYLRDMGDYAEMNGVWDAWVAAGRTPARACVEARLARP
                     EWRVEIKITAVKKDAATA"
     gene            4183..5046
                     /locus_tag="WHR98_000087"
     CDS             4183..5046
                     /locus_tag="WHR98_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HEZ2306834.1"
                     /translation="MKTLLPFFGVVRVSGEDRQTFLHGQLSNDINNLQTGQACYATYN
                     TPKGRVIANMIVVNRGGDLLLIMAQDLLEATVKRLRMFVLRAKAVFEILEDYAVDAEL
                     EASAEPLAAQEPSLVFTAECVSDGICTVVLPHRGILHIAPETALPPYDAAAENAWRLH
                     EIRSGYPWICAATKETAVAQMLNQHIIGGVHFKKGCYPGQEIIARAQYRGQVKRGLAV
                     LSGNSAAEAGILLAADGEEAGIVLDSVKDSENFTALAVIKFSAAQKTLSAPNGGSFKA
                     VRTFFKTEGAE"
     gene            5139..6098
                     /gene="ttcA"
                     /locus_tag="WHR98_000088"
     CDS             5139..6098
                     /gene="ttcA"
                     /locus_tag="WHR98_000088"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HEZ2306835.1"
                     /translation="MSKKTKQELENNKLSKRLRHAVGDAINDFNMIEPGDKIMVCLSG
                     GKDSYALLDILRQLQASAPIDFQLVAVNLDQKQPGFPEEVLPTYLESIGVPYKIVEED
                     TYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDDILATLFLNMFY
                     GGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPIIPCNLCGSQPNLQRQ
                     VIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLERGQTLKHGGDLAFD
                     SEKMPERFSDGSEEDESEIKIAPQKAERKVINILANKPKTCGA"
     gene            complement(6192..9131)
                     /locus_tag="WHR98_000089"
                     /pseudo
     CDS             complement(6192..9131)
                     /locus_tag="WHR98_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219209.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type III restriction-modification system
                     endonuclease"
     gene            complement(9144..10835)
                     /locus_tag="WHR98_000090"
     CDS             complement(9144..10835)
                     /locus_tag="WHR98_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEZ2306836.1"
                     /translation="MNWLGKSYARLLRNLPPETLISEDKTHNAKPENAGSQNLLIRGD
                     NLEVLKHLKNAYTNSVKMIYIDPPYNTGSDGFVYQDDRKFTPAELACLANIDEDEAAR
                     ILDFTDKGSNSHSAWLTFMYPRLYIARELLKDDGVIFISIDDNEAAQLKLLCDEVFGE
                     GNFIKDLIVNTSEGGGNAKYVVNGHETVLVYAKDITHFDNLKRPKDIRGKKIVINDEL
                     YWIQEDAVREQFGKYGNLHYEDIIEIKGIEFKNKIDKDIENNEYILIPKSYGKTIIGK
                     LRKVSDDFSKFHSILNIGNISKNLTKDGIRELEELFETGKGYSPFETPKPLDLLKRLV
                     LSATFKGNQTDLILDFFAGSGTTAHAVMQLNAEGQNGNRRYICVQLPEKTAEKSEARK
                     AGYPTIFDITKARIEKAAAKIRVEHPDYTGDSGFKIFQTADNFRQHPDKDFSPEQPDL
                     PLNDELSEEQLQTLLTTWTLYDGAALTTPVEPVRLGAYTAYLCEKRLYLMNAGFTSAD
                     LLAFIRKLDDDAAFNPNRVIVFGSNMASAMQHELDQAVRGYANKKEIELNVVIRV"
     gene            complement(11203..11760)
                     /locus_tag="WHR98_000091"
     CDS             complement(11203..11760)
                     /locus_tag="WHR98_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEZ2306837.1"
                     /translation="MKPKFKTVLTALLLAVSLPSMAATHVLMETDMGNIRLVLDESKA
                     PKTVANFVRYARKGFYDDTVFHRVIDGFVIQGGGFTEDLVQKATDKAVANESGNGLKN
                     TAGTIAMARTADPDSATSQFFINLADNASLDYKNGQYGYTVFGRVESGMDTVSKIARV
                     KTATRGFYQNVPVQPVKIRRVVVGQ"
     gene            complement(11825..12751)
                     /locus_tag="WHR98_000092"
     CDS             complement(11825..12751)
                     /locus_tag="WHR98_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEZ2306838.1"
                     /translation="MSEMKKTKVHLISGFLGTGKTTALKSLMAQKDPNEKWVIIVNEF
                     GEIGIDGAVLSDNGIPVAEIAGGCLCCTAGPQMGVTVQKMLRDAKPDRLMIEASGLAH
                     AASVIDELKAKPLDSLLEIGAVFTVVNPRQFINPDYAQQALYKDQIGICDVLVASKTD
                     LCTPEQLAEFHDKAAKLFPPKAKVVEVQNAQLDIRWLDIPVIEKSRYRLKALPDNTMG
                     FQSQGFTFPAGRDFDGEKLTNFFNDLPKMTEGLVRAKGVFQVLGTWVWLNWVDGQWGA
                     NQVSWRRDSRFELIAKSFDADLIEQKLKDALE"
     gene            complement(12739..13215)
                     /locus_tag="WHR98_000093"
     CDS             complement(12739..13215)
                     /locus_tag="WHR98_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEZ2306839.1"
                     /translation="MKTNFKQKIIEQARSEGLQVTALREQVLDIVLQQSGVIKAYNVL
                     SQMQQQSEGVLAPPTAYRALDFWAEQGVLHKVAAVNGYILCSHAQHECDDHCHDHEEA
                     EAHHSAFILVCTECGTADEQTLSHEWAALRAGVAESGFALKEEHVVLTGICKKCQK"
     gene            complement(13286..13741)
                     /locus_tag="WHR98_000094"
     CDS             complement(13286..13741)
                     /locus_tag="WHR98_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEZ2306840.1"
                     /translation="MKKPKILFVCLGNICRSPMAEYILRRRAAEAGIPLEADSAGTSG
                     WHDGEDMHRETAKILKKHGIDASGFTSRKIRQSDAAAFDCIIAMDGKNLSELERTFGR
                     RPEKIFKLTDLIPESGYDHVPDPWYTGDFEETFRLADAGCRALLEKISK"
     gene            complement(13866..14981)
                     /locus_tag="WHR98_000095"
                     /pseudo
     CDS             complement(13866..14981)
                     /locus_tag="WHR98_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246235.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
     gene            complement(15095..16192)
                     /locus_tag="WHR98_000096"
     CDS             complement(15095..16192)
                     /locus_tag="WHR98_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HEZ2306841.1"
                     /translation="MNQTFTLPDTRPYPQNPIKNHLLLNAYQLAHNSSQASRKLSSGQ
                     LQTEIRGMLEQNHYINLSLALTMSPDAGTYAALLSSVNAVLDCEKEGEVQWFALPVVL
                     VSGCKKERAIEMKLPTEALFACLKNYPHLRALTQETQWLPYLVHSSDLSAVAPDEWWR
                     AKQNTEAAAQHLRRFAPRPLLLPEGQSVHVVYALGFGSGKVQTALGQNLLQAGLPLMQ
                     VWQENLASEGVTLFANPLSPDSPVRALSDGSHTRQRMAMDVFAANAIRAVRMQSPRVG
                     VVAAAKAGGQVLFGFNATDGAFEVVPQVFLWQLSFTDNIGVIQQNFLDLMAECRVEHV
                     YLLHNPLGEQESIPSYAEALKREGHNPFFSA"
     gene            complement(16274..17857)
                     /locus_tag="WHR98_000097"
     CDS             complement(16274..17857)
                     /locus_tag="WHR98_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase regulatory domain-containing
                     protein"
                     /protein_id="HEZ2306842.1"
                     /translation="MPNKKKKAAFARAATENGVPDVSNIKNSYDDLMYESKAFSQTAI
                     NALEARARMMGLKPAAAAKAKVLELGCSMGGNIITQALYYPDAEFVGIDLSGRQVAQG
                     NAIIEKMGLKNVRLEEKDILTIDESFGKFDYIIVHGIWSWVPDAVKDKIFSICRNNLT
                     EHGIAYISYNVYPGWKRQEQLREIMYFAGRDVLEEPLEARTRKGLDALKALAEILEND
                     KGLGGGGKLPAIQKILNHNTYYVAHEYMEIFNDPIYVNGFIEWANRHRLAYIGDTDLY
                     VSFVSWMAEHTRERILALAGGDYIAKEFYSDILSDRQFRRSLLCREEVGDNIRRDESV
                     AVEVIESLNFRPARGETINFDENDTLLSGIRDVMKTGEPFKTEDVAENLARRFPGLEF
                     DRMKINSQLLLQTILGRFSVSSDNAGKPFFEDHKTYVPARFTNYAAAFVEHGAEAFVR
                     PANRYNESTPSFGYGHLYIMRQLSRPTSKQAVIDAVAENLNIVSTTPDGLTFHPPAEV
                     YVEEILADLADRHFLVSAD"
     gene            complement(18005..18217)
                     /locus_tag="WHR98_000098"
     CDS             complement(18005..18217)
                     /locus_tag="WHR98_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HEZ2306843.1"
                     /translation="METLILDIGGMSCGGCVKSVTRILESVKGVASVEVSLENKSATV
                     GYDPAQTDAGALIEAVEDGGYDAALK"
     gene            18563..18715
                     /locus_tag="WHR98_000099"
                     /pseudo
     CDS             18563..18715
                     /locus_tag="WHR98_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713084.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transporter"
     gene            18844..20280
                     /locus_tag="WHR98_000100"
     CDS             18844..20280
                     /locus_tag="WHR98_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEZ2306844.1"
                     /translation="MPLLSVEFALFFLAFLPIYWGLAKYPSAQNLLLLAAGMGWLYHI
                     GPVFAAIIVLYSSCVYLLGELLRSDRENTRRFWLGCGIAASLTVLGFFKYFDFFRPLI
                     AQYAGKGGAIDILMPLGLSYYTFQSLAYLVYCFRAPHAARFSWHELLLHLSFFPTVTS
                     GPIIRAAAFKSADGEQAGALAQIRTRQPRSPVRPALAVSLILLGIAKKWWLAGMLAEN
                     WVSPVFENPAQFNGWGVLAGVYGYTFQLFLDFSGYSDLVIGMAMLLGFRLPKNFSAPL
                     RAANIRAFWDKWHISLSTWIRDYIYIPLGGSKKGFLRTQLNLMAAMVLSGIWHGYGWN
                     FLIWGALHGTALVLLNTGDRYFGRNALCRLKYLAPLSWFVTFHFVCLSFVVFNTASPD
                     DAGAVFNALFANANGWNAPQQANMLLLASFASVMLLYPYLQRAFDGAVKGLEKIPMWL
                     WFIPISIILLLIIVLAPSGIPGFIYANF"
     gene            20291..21277
                     /locus_tag="WHR98_000101"
     CDS             20291..21277
                     /locus_tag="WHR98_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEZ2306845.1"
                     /translation="MKHFLSLFASILMSALIAAWFAQNPINAYWQQTYHRNSPLEPLA
                     AYGWWRSGAALQENAYTLSDGIKAFLSGETPPTAQDGGSADMPPEAAASEAAPQTGEI
                     QEWKQDTDTAAVRSGDKVFFAGDSLMQGVAPFVQKSLKQQYGIESVNLSKQSTGLSYP
                     SFFDWPKTIEETLKKHPEISVLAVFLGPNDPWDFPVGKRYLKFASDEWAQEYLKRVDR
                     ILEAAHTHRVQVVWLGIPYMKKAKLDGQMRYLDKLLSEHLKGKIILIPTAHTLSGGED
                     RYTDSVNVNGKPVRYRSKDGIHFTAEGQKLLAAKIMEKIVFEPSTQPSSTQP"
     gene            21274..22467
                     /locus_tag="WHR98_000102"
     CDS             21274..22467
                     /locus_tag="WHR98_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEZ2306846.1"
                     /translation="MNPKHLIAFSALFAATQAEALPVASVSLDTVTVSPSAPYTDTNG
                     LLTDYGNAAASPWMKKLRSVAQGSGETFRILQIGDSHTAGDFFTDSLRKRLQKTWGDG
                     GIGWVYPANVKGQRMAAVRHNGNWQSLTSRNNSGDFPLGGILAHTGSGGSMTLTASDG
                     KTGKQRISLFAKPLLAEQTLTVNGNTVSANGGGWQVLDTGAALPLTIHTEMPWDIGFI
                     NIENPAGGITVSAMGINGAQLTQWSKWRADRMNDLAQTGADLVILAYGTNEAFGDNID
                     IADTEQKWLDTVRQIHDSLPAAGILIIGAPESLKNTLGVCGTRPVRLTEVQQMQRRIA
                     RQGQTMFWSWQNAMGGVCSMKNWLNQGWAAKDGVHFSAKGYRRAAEMLADSLEELVRA
                     AAIRQ"
     gene            22716..24269
                     /locus_tag="WHR98_000103"
     CDS             22716..24269
                     /locus_tag="WHR98_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid--CoA ligase"
                     /protein_id="HEZ2306847.1"
                     /translation="MNRTYANFYEMLAAACRKNGNGTAVFDGKEKTAYRALKQEAEAV
                     AAYLQNIGVKFGDTVALAVSNSTEFITAYFAVSAIGAVAVPMNTFLKNSEYAYILNDC
                     KARFLFASAGLSKELAGLKAQTPVEKIIWTDKSRPAGEMAEGDAFFEDVRRFPEKPDL
                     GRQPRINDLAHIIYTSGTTGHPKGALISYANLFANLNGIERIFKISKRDRFIVFLPMF
                     HSFTLTAMVLLPIYMACSIILVKSVFPFSNVLKQALLKRATVFLGIPAIYTAMSKAKI
                     PWYFRWFNRIRLFISGGAPLAEQTILDFKAKFPRAKLLEGYGLSEASPVVAVNTPERQ
                     KARSVGIPLPGLEAKAVDEELVEVPRGEVGELIVRGGSVMRGYLNMPAATDETIVNGW
                     LKTGDFVTIDEDGFIFIVDRKKDLIISKGQNVYPREIEEEIYKLDAVEAAAVIGVKDR
                     YADEEIVAFVQLKEGMDLGENEIRRHLRTVLANFKIPKQIHFKDGLPRNATGKVLKRV
                     LKEQFDGNK"
     gene            complement(24359..26386)
                     /locus_tag="WHR98_000104"
     CDS             complement(24359..26386)
                     /locus_tag="WHR98_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HEZ2306848.1"
                     /translation="MSLSEFIERRTSFNPMVILTTLFFVCVLVVLVLTVPDQAQMWLD
                     RAKEVIFTEFSWFYVLTFSIFLGFLLILSVSSLGNIRLGRDEDVPEFGFLSWLAMLFA
                     AGMGVGLMFFGVAEPLMHYFSDITAGTPEHRQQQALLHTVFHWGVHAWSVYGTIALAL
                     AYFGFRYKLPLALRSCFYPLLKEKISGRFGDAIDIMALLATFFGIITTLGFGASQLGA
                     GLQEMGWIAENSFSVQVLIIAAVMSLAVVSAISGVGKGVKVLSELNLSLAFLLLFFVL
                     AAGPTVYLLSAFGDNIGNYLENLVRLSFKTYAYEREHKPWFESWTVLYWAWWCSWAPF
                     VGLFIARISKGRTIREFVFGVLLIPGLFGVLWFTVFGNTAIWLNDGVAGGMLEKMTSS
                     PETLLFKFFNYLPLPELTSIVSLLVISLFFVTSADSGIYVLNNITSRDKGLSAPRWQA
                     VMWGVLMSAVAVLLMRSGGLGNLQSMTLIVSLPFALLMLIMCFSLWKGLSADKKYFET
                     RVNPTSVFWTGGKWKERLVQIMSQTQEQDILKFLKHTASPAMHELQRELSEEYGLSVR
                     VDKMFHQDEPAIEFVIRKETMRDFMYGIKSVGQDVSDQLINDGNLPHIRHQTTYKPYA
                     YFFDGRVGYDVQYMNKDELIADILKNYERYLMLLDDVGQELMAHEQVELAE"
     gene            26675..28681
                     /locus_tag="WHR98_000105"
     CDS             26675..28681
                     /locus_tag="WHR98_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific recombinase"
                     /protein_id="HEZ2306849.1"
                     /translation="MADMKKITPQNLRPLLSESLGHTDFVNVLNALIKFLRRGGKKCA
                     GERFDLIIDTFKQDRELLSRFSRCFYIWLAQIHIYPALIKLGIFSRHSFAREMGIRIY
                     ERFSPSYKDFANLGEVFLYLFHSENDDKWLQTLNIRQWLVLYELIRSHAEPSKLQTAG
                     IRLADARLRAIEMLSVWTASEAIEPDLIRIAPRLLEADSSFVALQRETAKLVEHYRNG
                     TTPYDTAHLEVMFDQCFSQIDYLRRKGTGAGSGSSVKVAHLLERLRQTVDRLKLLTDI
                     QTGAGNSNRLTIALMNSLIYAAVEQYSTRHLRRSSIRMLARSITENKSHHGEHYITRN
                     RKEYFKMFYSAAGGGIIIALMALLKIRIGTLGLSPFLTSLSAGFNYGIGFMIIHMLHC
                     TVATKQPAMTAASFAEQVDLNEGGKAVDNKLAKLLIDVCRSQSVAVFGNVSIAILLAC
                     AISFGYAHLHQQPILDAHTAAYQFKSIDIIAYPTLWYAAIAGLWLFCSGIIAGFFDNR
                     ADYLNLRQRLPFNPLLRKIMRPGPRRVLAAYIHKHYGSLVGNFIFGMLLGMTGYFGHL
                     LGLPLDIRHVAFSSANLGYAAVSGNVGLGTFVLGIFSVLAIGLVNLCVSFSLALFVAL
                     RSRGTKIGSIRNLIKSFWNQIKSNPCILFLPPAKEQGHPPSDKP"
BASE COUNT         6818 a         8085 c         6920 g         6923 t
ORIGIN      
        1 cccgaaaaca acgtttcccg ttttcagacg gcatacgata tggacaattt catccggccg
       61 gtatagtgtt cgtcctgcgg cggcatcttt ccgatggcgc attttttcaa tattaattat
      121 ccgacttaca aaggtaaaac atgactgtcc gtatcgaaca cgatttattg ggcgaccgcg
      181 agattcccgc cgaagtgtat tggggcatcc acactctgcg cgccattgaa aactttaaaa
      241 tctccacaca aaaaatttcc gacgtgccgc agtttgtccg cagtatggtg atggtgaaaa
      301 aagcaaccgc gcaggcaaac ggcgaattgg gtgcagtaaa acccgaaatc gccgccgcca
      361 ttgaaaaggc ttgcgacgaa gttctgctga acaaccgctg cctcgaccaa ttcccctccg
      421 acgtgtatca gggcggtgcg ggtacttcgg tcaatatgaa caccaacgaa gtcatcgcca
      481 acctcgcatt ggaagccttg ggctatgaaa aaggccgcta cgacatcgtc aatccgatgg
      541 accatgtcaa cgccagccaa tcgaccaacg atgcctatcc cacgggcttc cgccttgccg
      601 tgtattacag tatcggcgaa ttgctcgaca aactggtcgt tctgaaaaac gcctttgccg
      661 ccaaagccga agaatttaaa gacgttttga aaatgggccg cacccagctt caagatgccg
      721 tgccaatgac tacaggacaa gaattccaat cttgccaagt gttgttggaa gaagaaatcc
      781 tcaacctcga ccgcacgcgc caactgcttt tagaagtcaa tttgggcgca acggcaatcg
      841 gcacgggcgt gaacacgccc aaaggctacg ccgaactggt ggtcaaaaaa ctctccgaag
      901 tcagcggctt gccttgcaaa ctgaccgaaa acctgattga ggcgacctcc gactgcggcg
      961 catatgtgat ggtacacggc gcattgaagc gcacggcggt caaactctcc aaaatctgca
     1021 acgacttgcg cctgctctct tccggcccgc gtgccggctt gaaagaaatc aacctgcccg
     1081 aattacaggc cggttcttcc attatgcctg ccaaagtcaa tcccgtgatt cccgaagtgg
     1141 tcaaccaagt ctgcttcaaa gtcatcggca acgatacgac gattaccttc gccgccgaag
     1201 ccgggcaact gcaattaaac gttatggagc cggtaatcgc ccaatgtatg tttgaaacca
     1261 tttctctctt gggcaatgcc gctctcaacc tgtccgaaaa atgcgtcaaa ggcattacgg
     1321 tcaaccgcga aatctgcgaa cgttacgttt tcaactctat cggtttggtg acttatctga
     1381 acccatacat cggccaccac aatggcgact tggtcggcaa aatttgcgcc caaaccggca
     1441 aaggcgtgcg cgaagtcgta ctggagcgcg gtttgttgag tgaagaagag ctcaaccgca
     1501 tcctctctcc cgagaacctg atgaaccccc atctgtaacg ttgcagacaa atgccgtctg
     1561 aagcagggat gctgcttcag acggcatttt gttatatcaa tcagccggat tatatgccga
     1621 acagtgcctt gacctccgcc caataaaaca ggcaggcgat ggaacacagt gccaacacga
     1681 ttcccgccgt attgattgtg ttgatttttt ccttaaaaaa cagtgcgccc gaaagcgtcc
     1741 ccaaaacaat cacgccgata ttcataccgg caaaaaccag cgtgggattg tccttcatca
     1801 tttggtgcgc ggtgatgtag gttacgatgt tcatgaagtt caaaccgccc aagagtatgc
     1861 cgccgaccac actctcaacg cgccatctga ccgatttggc aaacaggcag gcaaacatca
     1921 gcacacccgc cagcacaaat gcaaccagca ggttgcccgc aaatgccgtt ccgcttttgg
     1981 caagctgttt gaacaggata tcgataatgc cgtaacctgc ccacacgccc agcagcaatg
     2041 ccgcctgccg ccacgcgctt cctgattttt tgccaccgct gtgtttccaa agcaggcaga
     2101 acagtgcggc aaatgcgagg cacagcccga ttagtttgcc ttcgctgagt ttttcgccaa
     2161 acagcgtcaa ggcggcaaca atcggcaaaa acagcgacaa acgctgcgcc gcgtcggatt
     2221 tgacgatacc ggcggcttcc acagatttgc ccattatcac gaatacggac ggcagcagca
     2281 cgcccaaagc ggcaaacagc ggccacgtcg gcaaaaatgc gccgatattg ccgatatccg
     2341 gcttcaatac cagcagggtc agtatgaccg cgaccacata attgacggcg accgcctgcg
     2401 cgatgtcgat ttttttcttc cttgccattt tcagcaaaat ggaaaccgac acgctgaaca
     2461 cgatgctgat taacaggtaa gccatactat atccatttct cgggtgcaac cgccctgccg
     2521 ccgttgaagc ggataaagcc ggcgatgatg cggtagaaat accagacgtt cgttgcaata
     2581 ataatcagca cgccgatacc caaaagggca gtcagcgcac ccaaaatata aagccaaaat
     2641 gtgcgccaaa aggttttaat caggtattcg gtatgtgcgg catagacaat gctgtccaaa
     2701 ctgttccgtt tcatataggc gagaatcacg ccgactatgg gcatataggc gaaaatcacg
     2761 ccgactatgg gcatgaacag catgattgca cccaaaccga acaggatgta ggcggcgagg
     2821 acatagttgc gcccgcttcc gccgccggac ggttcgtaag catggcacga acgtgatgcc
     2881 tgccgttcaa acgcctgtct gaacgcctgt tcgcggcgca tctgttcgcg gtaaaactgc
     2941 tccctgcgcg cctgttcgcg gcggaatgcc tcttcctgcc gcccgcgttc ctcatgccgt
     3001 ctgaaggacg cgtcgtattg catccgtttc gacaggtcgg aaagcgtatc gtaagcccgt
     3061 tggatttctt tgaacttttc ttccgccttc ggattgcccg gattgcggtc gggatgatat
     3121 ttcatcgcca gcttgcggta ggcgcgtttg atttcgtccg ctcccgcctg cggcgacacg
     3181 cccaatacgg catacaaatc tttgtccatg ttgttccttt atactttccc gtcaaaccgc
     3241 cgcctgtatt gttttcgggt tcaaaatatt taaatctccg ggacggatgc cgataatgaa
     3301 cccgcgtttt ccgccgttga tatagatggt ttccaaatcc atcaccgact gttcgacgta
     3361 aatatccaac tttgtccgga tgccgaacgg cgttgtgccg ccgaccagat agcccgtcca
     3421 cttgtttgcc tgtacgggcg tggcgggttc gatgtgtttc gcacccaaat gccgcgccag
     3481 attgcgggtt gaaatctgct tgtcgccgtg catcaagaca atcagcccct taccgttttc
     3541 atcttgcaaa acaatggttt taatgaccaa gtgttcgtct ttgccgaata gtcgggcaaa
     3601 ctgcgccgtg ccgccgtgtt cctcataggc ataggtaaaa ggttcaaatt cgatgccgtt
     3661 ttcacgcaaa acgcgcacgg caggtgttat cggataagtg tgtttactca tttttcgtca
     3721 tgcaaaacat ggaaatcggt caagcgcaat gttaccatat atccccttta tcgaaggaaa
     3781 ccgatatgga tatccgatat ttcggcacaa cgccccgcta ttccgaagcc gtcggcgcaa
     3841 acggcttgat tttcctctcc ggcatggttc ccgaaaacgg tgaaacggct gccgaacaga
     3901 ctgccgacgt gcttgcccaa atcgaccgct ggctggcgga atgcggctcg gacaaagcgc
     3961 acgttttgga tgcggtcatc tatctgcgcg atatgggcga ctatgcggaa atgaacggcg
     4021 tgtgggacgc ttgggttgcc gccggcagaa cgcccgcccg cgcctgcgtg gaagcgcggc
     4081 tcgcccgtcc ggagtggcgc gtcgaaatca aaataaccgc cgtgaagaaa gatgcggcaa
     4141 ccgcataaac agatttcctt tatatttcag agtacgcaaa tgatgaaaac cttactgccc
     4201 tttttcggcg tggtacgcgt cagcggcgaa gaccgccaaa ccttcctgca cggacagctt
     4261 tccaacgaca tcaataatct tcagaccggg caggcgtgtt atgcgactta caacacgccc
     4321 aaaggccgtg tcatcgccaa tatgattgtc gtcaaccgag gcggcgattt gctgctgatt
     4381 atggcgcaag acttgcttga agcaacggtc aaacgtttgc ggatgtttgt gttgcgtgcc
     4441 aaagccgttt ttgaaatcct tgaagattac gccgtcgacg cggaattgga agcatccgcc
     4501 gaaccgcttg ccgcgcaaga acccagtctc gtctttaccg ccgaatgcgt ttcagacggc
     4561 atctgcaccg tcgtcctgcc ccatcggggc attttgcaca tcgcccccga aaccgccctg
     4621 ccgccttatg atgccgccgc cgaaaacgcg tggcggctgc acgaaatccg tagcggttat
     4681 ccgtggatat gcgcggctac caaagaaact gccgttgccc aaatgctcaa ccagcacatc
     4741 atcggcggcg tacacttcaa aaaaggctgc tatcccggtc aggaaatcat tgcccgtgcc
     4801 cagtatcgcg gtcaggtcaa acgcggcttg gcggtattgt cgggaaattc ggcagccgaa
     4861 gcaggcatcc tgctggcggc agacggcgaa gaagccggca tcgtgcttga cagcgtaaaa
     4921 gattcggaaa actttaccgc ccttgccgtg attaaattct ccgccgcaca aaaaacactg
     4981 tccgccccaa acggcggcag cttcaaagcc gtccgcacct tctttaaaac cgaaggtgcg
     5041 gaataagccg ccgatgccgt ctgaagcact tcagacggca ttgccgcccc gccaatcggt
     5101 tacaatgccg cctttctaat tttcaaaccc aaaccgttat gtccaaaaaa accaaacaag
     5161 aactcgaaaa caacaaactc agcaaacgcc tgcgccacgc cgtcggcgac gcgattaacg
     5221 atttcaatat gatcgagccg ggcgacaaaa tcatggtctg tctctccggc ggcaaagaca
     5281 gctacgccct gttagacatc ctgcgccagc tccaagccag cgcgccgatt gatttccaac
     5341 tggttgccgt caatctcgac caaaagcagc cgggcttccc cgaagaagta ttgccgacct
     5401 atctcgaaag catcggcgtg ccgtacaaaa tcgtcgaaga agacacttat tccaccgtca
     5461 aacgcgtatt agacgaaggc aaaacgactt gttcgctgtg cagccgcctg cgccgcggca
     5521 tcctctaccg cactgcaaaa gaattgggct gcaccaaaat cgccttggga caccaccgcg
     5581 acgacatcct cgccaccttg tttttaaata tgttttacgg cggcaaactc aaagccatgc
     5641 cgcccaagct ggtgagcgac aacggcgaac acatcgtcat ccgtccgctg gcgtatgtaa
     5701 aagaaaaaga cttaatcaaa tacgccgaat taaaacaatt ccccatcatc ccgtgcaacc
     5761 tctgcggctc gcaacccaac ctgcaacgcc aagtcatcgg cgatatgctg cgcgattggg
     5821 acaaacgctt tcccggccgc atcgaatcga tgttctccgc cctgcaaaac gtcgtccctt
     5881 cccaccttgc cgataccgaa ctcttcgact ttgccggatt ggaacgcggt caaaccctga
     5941 aacacggcgg cgatttggcg tttgacagcg aaaaaatgcc cgaacgtttt tcagacggca
     6001 gcgaagaaga cgaaagcgaa atcaaaatcg cgccgcaaaa agccgaacgc aaagtcatca
     6061 acattctggc gaacaagccg aaaacctgcg gcgcgtaacc ccccgccgtc aaaaatgccg
     6121 tctgaagccc gtttggcgtt tcagacggca ttttaaaatc ccgaagcaga cggcttccaa
     6181 acatttgttt ctcagtgtcc gttttcagaa tgcccgcctg cgggcatatt ttgcccgatc
     6241 agttcggcta tcctctcgcc gtcaaactga gttttgaaca ccaccttgat ttctttggaa
     6301 atctcggcaa acagcttttc ggcatgtttg attttccgct cttcgctttt tcgcaaatct
     6361 tccgccccgt cagtcccttt ggcttcaatc acaaagttca ggatctcgcc gcttttggtt
     6421 ttcacgatat aggcaaaatc gggcgaatac gtgccgccgc cggcaacagg gattttgatg
     6481 gagtttctcg gtattttggt aaatacggtt acgccttcaa tttggttgtt ggcgacattt
     6541 tcatgttcta tatccgaatc gtagaaaatc tcgtcgaaga gatagccggc ggcaggccgg
     6601 tgctccgtat cttcaaatct gcccaaatct gcttttttca ccgcgcgcgg tttgccgtct
     6661 ttattggtaa atttggtcgg atggattttg ctgccgacaa gccggtaatc cagttcgaat
     6721 ttatggaagg aatgatgaag caaaaaccgg ttgaagccgt ttttgatttg ggcgatggtt
     6781 tgcatattca aaaaatcgcc aatgttcagt tcgttgcgga tgcagtaaaa cgcctgatgc
     6841 aaagtctgca tacggatttt tgccgtttgt gccagttttt ccagaaactc tcggtaagtc
     6901 attgtgttga aacggataaa atcttaatct tcaaaactgt ctatgcggcg ggaaagcata
     6961 agcccgttgt tgatataagc ttcgtttacc gccgtgcgta tgcctgcctg tgggaatttg
     7021 gcagcgtttt catgcaaata ggcggtaaat aaatcggcaa attcggcttc atccttgatt
     7081 ttatactgca aaacggcttt atggtgaatc agctcccaca aggctttgag ttcttcatat
     7141 ttgccttcgc gcatgatgat ggtgtctttg ccttcgtctt tggcgttgct gactttgcct
     7201 ttgtccaaac ctttggggaa ggcttcggga taggcggctt ttaatttgtc atagccgtct
     7261 tcggcaaagt tttcattgtc gtcaatgatg ccatctaaaa acagtttgtt taacaatccc
     7321 agcggtttga tatcggggta tttttgcaat attttttgtt tcagctcttc ggtaaacttt
     7381 tttgagattt cttcctgaaa agaattatcg ttgatttcgc cgacaagctg cttcacaaag
     7441 tctttttcgc tgctatcgac aaaataattc agtttgtacg gcacatcgcg cacccgcgcc
     7501 atcagctcgt ttaccggcag gcgcaggccg cgtccgactt cttgcagctt ggaagtcgtg
     7561 ctgccgctgg aacgcagttt gcaaatctgg aaaacgttgg gattgtccca gccttcgcgc
     7621 agcgtccatt tggaaaaaat aaagcggcgc gggttgtcca aagacaacag tttttcctta
     7681 tcgtgcagga tttcattgat ttcctgctcg attctatcgt cgctgtctgt attgtctttg
     7741 gaaaaataac cgccgtggca ggcggataca tcgtccaacg tcttttgcag gtaatcgcgg
     7801 taaaacgggt cgctttccgt tttcagacgg cgtgccgctt ccgcgcgaat ccagctttca
     7861 aatttatctt tcaggctgcc tgaaagctcg ttgccgctgc ggtagcccgc aatatcatca
     7921 ataaaaaaca gcgtcagcgg cttgattttg ggctgtggcg cgcgttctgc caaaagtgcg
     7981 cgttccagct tgaaatgttc ggcaaccgcc cgctgcatca tcgcatcctg caccgtttgc
     8041 gaataggaat aagggttgat gacggcgccc gttttcaact ccaagccgtt gcttaacacc
     8101 accacggttt tattcatttt gtcgattttc aaatctgaaa cagcaggatg gattttcgac
     8161 aaatcttcgc cttttgccag tttgaacgtc tgctttttgt ccttttcgtt taattcaaat
     8221 ttcgcttctt tgccgcccga cgacaccagt tttaccgccg catccatgcc gccctgcatt
     8281 tcttcctgaa acacgcgcac gcctttgacc agcccgtcgt taaacgcgtc tactgccgtc
     8341 aaacggtaaa gcaagttgta atattcatcg ttaaatgtcg caccgtagcg caaaatatat
     8401 tgcggtttta agcgtttgat attgccccac gttttcgcgc tctcccgggt cgggaattta
     8461 tgcggttcgt ccacaatcac aaacgggcgc acggcggcca atgcatcaac gggattgtca
     8521 aacaaatcct tcaatgcctt gtcgcccgta tcgttcatgg acgacgaatt aaccatgccc
     8581 gcgttaatca gcagcacatg gatttccttt ttgttttccg ctttgacaaa ttgctcaatc
     8641 gttatgggcg cattggactt tttgccctta ttctttttcg cgctttccac cacataggtt
     8701 ttcaggcgca cgccttcata atcgccgccg aaatcctgtt caaaatgctc tgccaaagcc
     8761 ttgctttgca aaaactgctg tgttcccgcc ttaatggaca aagtcggcac gaccacgata
     8821 aatttgaaca cgcccagcca acggtgcagc tcgaacatgg tttgtgtgta ggtataggtt
     8881 ttgcccgtgc ccgtttccat ggaaatatca aggatatttt ggtcgtccga acggtcgggg
     8941 aatcggccgt ctataccgtt ttggctttgc actttcagga tattgtttgc gtattgtttt
     9001 gcagcaaaca aaagttcggg attttcgtct gccgtccgat atttgggcgt tgccccgtca
     9061 aacacgccca aaaccgccga aaccgcccgc atttggtgcg gctggttttt ctcgtaatta
     9121 aaaccgctca tgaattgcct ccgtcaaacc ctgataacca cattcaactc aatctctttt
     9181 ttattggcat aaccgcgaac cgcctggtca agttcgtgct gcatggcgct tgccatattg
     9241 ctgccgaata caatcacgcg gttgggattg aaagccgcat cgtcgtccag cttgcggata
     9301 aacgccaaca aatcggcaga agtaaaaccg gcattcatca gatacagccg tttttcgcac
     9361 agatacgccg tgtaagcccc taaccgcaca ggctcaaccg gcgtggtcag tgccgccccg
     9421 tcatacagcg tccaggtggt cagaagcgtt tgcagctgtt cttcgcttaa ttcatcgtta
     9481 agcggcaaat ccggttgttc gggcgaaaaa tccttgtccg gatgctgcct gaaattgtct
     9541 gccgtttgaa agattttgaa gcccgaatcg cccgtgtaat cgggatgttc gacgcggatt
     9601 ttggcggcgg ctttttctat gcgggctttg gtgatgtcga agatggtcgg gtagcctgct
     9661 ttacgggctt cggatttttc agcggttttt tcgggaagct gtacacagat atagcggcgg
     9721 ttaccgtttt gtccttcggc gttaagctgc atcacggcgt gggcggttgt gccgctgcct
     9781 gcgaagaagt ctaggattag gtcagtttga tttcccttga aagttgcaga aagaactaat
     9841 cttttcaata aatctaatgg ttttggtgtt tcaaaaggag aataaccttt tccagtttca
     9901 aacaactctt ctaattcacg aataccatct ttagtaagat ttttacttat atttccaata
     9961 tttaagatgc tatgaaattt ggaaaaatca tcggatactt ttctaagttt tccaataatt
    10021 gttttcccat aagacttcgg aattaagata tattcattat tttcaatatc tttatcaatt
    10081 ttgtttttaa actcaattcc ttttatttca ataatatctt cgtaatgcaa gttcccatat
    10141 ttgccaaact gttcgcgaac ggcatcttcc tgtatccaat ataattcatc attgattaca
    10201 atttttttgc cgcgtatatc ttttggtctt tttagattgt caaaatgagt aatatctttc
    10261 gcataaacta aaacagtttc atgcccattt acaacatatt ttgcattacc accaccttct
    10321 gatgtattaa caattaaatc tttaataaaa ttcccttccc caaacacttc atcacacaac
    10381 aacttcaact gcgccgcttc gttatcgtca atcgagataa aaatcacgcc gtcgtccttt
    10441 aacagttcgc gggcgatata caggcgcgga tacataaagg tcaaccatgc actgtgcgag
    10501 tttgagcctt tgtcggtgaa atctaaaatc cgcgcggctt cgtcttcgtc aatattggct
    10561 aagcaggcaa gttcggctgg tgtgaatttg cggtcgtcct gatagacaaa gccgtctgat
    10621 ccggtgttgt agggcgggtc gatgtaaatc atcttcacgc tgtttgtgta ggcgtttttt
    10681 aagtgtttca acacttctag attgtcgcca cgaatcagta ggttttggct gcctgcattt
    10741 tcgggtttgg cgttgtgcgt cttgtcttca cttatcaggg tttcgggcgg caggttgcga
    10801 agcaggcgag catatgattt gcccagccag ttcatttcgt aaaattcgcg tccgatgtcg
    10861 gtctgtggcg caatttcggc ttgtaatctg tcgataagga aatttccgtc tgcgtcaaaa
    10921 caggcgggaa acagtttttt gagctgttcg agttgggtag agttggcggt aatgccgtct
    10981 gaagtgtaga ttgcctcggt gttcaccccg gctgtgtcga ttagatcagg gcttgggttg
    11041 ggttgggttg ggttgggttg ggttgggttg ggttgggttg gcagcatttt aaaatcctcg
    11101 gtttgaattt gtcaatatca actgtctgtt ttaaaatatt ttttcacttc agacggcgtt
    11161 ttttgtgaaa cgggcgacgc cgtctgaacg tctgtctgcg tgttactgtc cgacaacaac
    11221 gcgacggatt ttgacgggct gtacgggtac attttgataa aagccgcgcg tggcggtttt
    11281 gacgcgggcg attttggaaa ctgtgtccat tccgctttcg accctgccga aaacggtata
    11341 gccgtattgt ccgtttttgt agtcgagcga agcgttgtcc gcgagattga taaagaattg
    11401 gctggtggcg gaatcggggt ctgccgtccg cgccatggcg atggtgccgg cggtgttttt
    11461 caagccgttg ccggattcgt tggcaacggc tttatcggtt gccttttgta ccaagtcttc
    11521 ggtaaatccg ccgccttgga taacgaaacc gtcgataacg cggtgaaaaa cggtgtcgtc
    11581 gtaaaagcct tttcgggcat agcgcacgaa attagcaacg gttttggggg ctttggactc
    11641 gtccaaaacc aaacggatat tgcccatatc ggtttccatc aaaacatggg ttgccgccat
    11701 agacggcagg gaaaccgcca aaagcagcgc ggttaaaacg gttttaaatt tgggtttcat
    11761 cccatcctcc tcagaccttc agacggcatt ttcatttcat atgccgtctg aaagcgcgtt
    11821 aacgctattc caatgcatct ttaagttttt gttcgattaa atccgcatca aacgatttgg
    11881 caatcaattc aaaacgcgaa tcgcgccgcc atgagacttg gttcgcgccc cactgtccgt
    11941 ctacccagtt gagccacacc cacgttccca atacttgaaa cacgcctttg gcgcggacga
    12001 gtccttcggt cattttgggc aggtcgttga aaaagttggt cagcttttcg ccgtcgaaat
    12061 cgcgtccggc ggggaatgtg aaaccttgcg actggaagcc catggtatta tccggcaggg
    12121 ctttgaggcg gtagcgtgat ttttcgatga cgggaatatc gagccaccgg atgtcgagtt
    12181 gtgcgttttg gacttcaacc actttggctt tgggcgggaa cagttttgcc gctttgtcgt
    12241 gaaattcggc aagctgttcg ggggtgcata aatcggtttt gctggcgacc aatacgtcgc
    12301 agatgccgat ttggtcttta tacaacgcct gttgcgcgta atcggggttg atgaactggc
    12361 gcggattgac gacggtaaag acggcgccga tttccaaaag gctgtccagc ggtttggctt
    12421 tgagttcgtc gatgacgctg gctgcgtgag ccagtccgct tgcttcaatc atcaggcggt
    12481 cgggcttggc gtcgcgcagc attttctgca cggttacgcc catttgcggg ccggcggtgc
    12541 aacacaaaca gccgccggcg atttctgcca cagggatacc gttgtcgctc aataccgcgc
    12601 cgtcaatgcc gatttcgccg aactcgttga cgatgatgac ccatttttcg ttcgggtctt
    12661 tttgcgccat caggcttttg agcgcagtgg ttttgcctgt tcccagaaaa cctgaaatca
    12721 ggtggacttt ggtttttttc atttctgaca ttttttacag attccagtta aaacaacgtg
    12781 ttcttctttc agcgcaaagc cgctttcggc aacgcctgcg cgcagtgccg cccactcgtg
    12841 gctgagggtt tgctcgtccg ccgtgccgca ttcggtgcag accaaaataa acgcgctgtg
    12901 gtgcgcttcg gcttcttcgt ggtcgtggca atggtcgtcg cactcgtgct gcgcgtggct
    12961 gcacaaaata tagccgttga ccgccgccac tttgtgcaaa acgccctgct ccgcccaaaa
    13021 atcaagggcg cggtaggcgg taggcggtgc aagcacgccc tcgctttgct gctgcatctg
    13081 cgacaagacg ttgtaggctt taatcacgcc gctttgctgc aagacaatat ctaatacctg
    13141 ctcgcgcaaa gcggttacct gcaagccttc gctgcgtgcc tgttcgataa ttttctgttt
    13201 gaaatttgtt ttcataaatt ctctgtttat gccgtctgaa caaccgatac ggcaggaggc
    13261 ggttttatat ttgtattcaa ttgctttatt tggaaatctt ttccaacaat gcccgacagc
    13321 ccgcatccgc aagcctgaag gtttcttcaa aatcgcccgt ataccacgga tcggggacat
    13381 ggtcgtaacc gctttcgggt atcaggtcgg tcagcttgaa tattttttcc ggccgcctgc
    13441 cgaaggttct ttccaattcg gacaaattct tgccgtccat cgcgatgatg cagtcaaacg
    13501 ccgccgcatc gctttggcgg attttgcggc tggtaaagcc tgaagcatcg ataccgtgtt
    13561 ttttcaatat ctttgccgtc tcgcggtgca tatcttcgcc gtcgtgccag cccgatgtcc
    13621 ccgcgctgtc cgcttcaagg ggaatgcccg cttcggcggc gcggcggcgc aaaatgtatt
    13681 ccgccatcgg cgaacggcag atgttgccga ggcagacaaa aaggattttc ggttttttca
    13741 tatcccctcc ctgttccggc gcgatgccgt ctgaagcgga aaccctttca gacgtcatcg
    13801 gtcggttaat cgtaaccgca taaggcagaa ccagccaaaa catccatctg gaagaaatgg
    13861 tttggctaaa tcttaggcat atttaataag tgtccaatat tagaagccgt atgctccaaa
    13921 tagagactgg catttttcaa actatcttct aaaggttcac ttttctccaa aatagaaaag
    13981 gcagcttgga tattttcaaa tggcagggaa ggcaaatctt caacgagact gccacaaata
    14041 gcgacaacag gaactccgac aggggttctt tttgctacac caataggcgc tttccctgct
    14101 aaactttgac gatctagtct tccttcacca acgataacca agtcaacatc tgacactttc
    14161 ttatcaaagt caatcaagtc caggcaggtg tcaattccag atacgatact tgcctgagca
    14221 aaggcgcaca aaccaccagc gatgcctcca ccagctcctg ctcctttaag ttttaatgtt
    14281 gcaggggaga ctttttcata aaaatcttgt attgcctgat ctacggccta aaacatagta
    14341 gaatccaacc ctttttgctt gccaaacgta taggtcgcac cttggtgtcc acataaggga
    14401 ctcacaacat ctgctaaaat acgaatgtga acatcttcag gaattttata gcgattttct
    14461 gttgaaacag aagctaggtt tagtaaggat tgaccgcaag cgggtaaggc atttccatcc
    14521 tcatcataaa attgataacc taaaccagca gcaatcccaa tacctccatc attactggcc
    14581 gtaccgccaa cgccaatata gatttcttta atttcttgac taatgaggtg gcgaatcaat
    14641 tctccaatac cacgagtttg gatttgtaat ggatttcgtt tctctagcgg gatttttcca
    14701 agaccaacca aatcagcaac ttcgaatagg gctagttgtt ctttttgaaa atagcgcatg
    14761 acttcttttt gtccaaaagg tcctgtcact tggagacatt tttcttctag gtcaagagaa
    14821 tgtcggatag catctacagt gccttctccc ccatcaccga caggacagag gagacattcc
    14881 acatctgcta tcgattgttg gaagcctctt tttattgctt cagctacctg ttgagctgtc
    14941 aagctttcct taaacgaatc cggtgcaatt acaatcttca tatttataat tcatcctttc
    15001 gtttcactca aggcacaaca cagaatgaaa aagtgttgtg ctctttattt tgatttatta
    15061 tagaaatgag aaagcctatc actactacaa atcactatgc gctgaaaaac ggattgtgcc
    15121 cttcccgttt caatgcttcc gcatagctcg ggatgctttc ctgttcgccc aagggattgt
    15181 gcaacaggta aacgtgttct acacggcatt ctgccattaa atccaaaaaa ttttgctgaa
    15241 taacgccaat attgtcggta aaggaaagct gccacaaaaa cacctgcggc acgacttcaa
    15301 acgcgccgtc ggtcgcatta aacccgaata aaacctgtcc gcccgccttt gccgcagcga
    15361 ccacgccgac gcgcggactc tgcatacgga cggcgcgtat cgcgtttgcc gcaaacacat
    15421 ccatcgccat acgctggcgc gtgtggctgc cgtctgaaag cgcgcgtacc ggagaatccg
    15481 gggaaagtgg attggcaaac agcgtaacgc cttccgatgc aagattttcc tgccatacct
    15541 gcattaaggg caggcctgcc tgaagaaggt tctgacccaa tgccgtctga accttgccgc
    15601 tgccgaaacc cagcgcgtaa acgacgtgga cggactgccc ttcgggcaac agcaaagggc
    15661 gcggggcgaa acggcgcaag tgttgcgccg ccgcttcggt attttgtttg gcacgccacc
    15721 actcatccgg cgcgaccgcg ctcaaatcgg aagaatgcac aagataaggc agccattgcg
    15781 tctcttgcgt caacgcgcgc aggtgcggat agtttttcaa acaggcaaac aatgcctccg
    15841 tcggcagctt catctcgatt gcccgttctt tcttgcagcc ggacaccagc acaaccggca
    15901 gggcgaacca ctgcacttcg ccttctttct cgcaatcgag caccgcgttc acactggaaa
    15961 gcagcgcggc ataagttccg gcatcgggcg acatcgtcaa cgcgagggaa aggttgatat
    16021 agtggttttg ctcaagcatt cccctgattt cggtttgaag ttggccggac gagagtttgc
    16081 gcgaagcctg ggaagaatta tgcgccaact ggtaggcatt gagcagcagg tggtttttaa
    16141 tcggattttg gggatacggg cgcgtatcgg gcaaggtaaa tgtctggttc atatgtgtcg
    16201 tgtaccgttt ttcgcagtgt gtgtctttcc tgtttgaaaa tatatcggac ggattgccgt
    16261 cgggacttgc ccgtcaatcc gccgaaacga gaaaatgcct gtctgccaag tctgccaata
    16321 tttcttccac atacacttcg gcaggcggat ggaatgtcaa accgtcgggc gtggtgctga
    16381 cgatgttcaa gttttcggca accgcatcta tcaccgcctg tttgctcgtc ggccgcgata
    16441 attgccgcat aatgtacaaa tgcccgtacc cgaatgaggg cgtgctttcg ttgtaacggt
    16501 tggcaggccg gacaaacgct tccgcgccgt gttccacaaa ggcggcggca tagtttgtaa
    16561 aacgcgccgg cacataggtt ttatggtctt caaaaaatgg tttgcccgca ttgtccgatg
    16621 aaacagaaaa acgcccgaga atggtttgca ataaaagctg ggaattgatt ttcatgcggt
    16681 caaattctag accgggaaat cggcgggcaa gattttccgc aacatcttcc gttttaaacg
    16741 gctctccggt tttcatcaca tcgcgtatgc ccgaaagcag ggtatcgttt tcatcaaagt
    16801 tgatcgtttc ccctcttgcc gggcggaaat tcaaactttc tatcacttcg acggcaaccg
    16861 actcatcacg cctgatattg tccccgactt cctcacggca taaaagcgaa cggcggaatt
    16921 ggcggtcaga taaaatatcg ctgtaaaatt ctttggcaat ataatcgccc cctgccaatg
    16981 ccaaaatccg ctcccgcgta tgctccgcca tccaagaaac aaaagacacg tacaaatcgg
    17041 tatccccgat atacgccagc cggtggcggt tagcccattc gatgaagccg ttgacgtaaa
    17101 tcgggtcgtt gaatatttcc atatattcgt gtgcgacata ataagtattg tgattcaata
    17161 ttttttgaat cgccggaagt ttgccgccgc cgcccaagcc cttgtcgttt tccaaaattt
    17221 ccgccagcgc cttgagcgcg tccaagcctt tccgcgttcg cgcttccaag ggttcttcaa
    17281 gcacatccct gccggcaaag tacataattt cgcgcaactg ttcctgccgt ttccagccgg
    17341 ggtaaacatt gtatgaaata taggcaatgc cgtgttcggt caggttgttc cggcaaatcg
    17401 aaaaaatttt gtctttaact gcgtcaggca cccacgacca aatgccgtgg acgatgatat
    17461 agtcaaactt cccgaatgac tcatcgatgg tcaaaatatc tttttcttcc agacgcacat
    17521 ttttcaagcc cattttttca atgatggcgt tgccctgcgc aacctgcctg ccggacaagt
    17581 cgataccgac aaattccgca tccgggtaat aaagagcctg cgtgatgatg ttgccgccca
    17641 tcgaacagcc cagctccaag accttggctt ttgccgctgc tgcaggcttc agacccatca
    17701 tgcgggcgcg agcctccaag gcgttgatgg cggtttggga aaatgctttg gattcataca
    17761 tcaaatcatc atatgaattt ttgatgttgg acacgtccgg cacaccgttc tccgttgcag
    17821 cacgcgcaaa ggcggctttt ttctttttgt tcggcatatt ttgtttgtct gaaggcacta
    17881 ttgcccgcaa gtttaaccaa ttcatcctac ccgttcaact aaatcaaatg ccgtctgaag
    17941 gcgcggagcg tacttcagac ggcatcgggg aggcgcgaag gcttcagacg gcatttttgc
    18001 cgctttattt caacgcggca tcatagccgc cgtcttcaac ggcttcaatc aacgcccctg
    18061 catcggtttg cgcggggtcg tatccgacgg tcgcgctttt gttttcaagg ctgacttcga
    18121 cgcttgccac gcctttgacg ctttccagta tccgggtaac gcttttgacg cagccgccgc
    18181 agctcatgcc gccgatgtcg aggataaggg tttccatcat tttcctttcg ttggaactgc
    18241 aatctgacgg gcgttattgt aagtcggggc gtgaacttgg gcaaacgcgg aaacggtgcg
    18301 gcggtttgga aaaagacgga cgcttgcgca taatggcggc aattcccatc aggacgacaa
    18361 caatgaacgc ttcgcaaaaa ccctggttga gcatcatcgc cttggcaatc ggcgcattta
    18421 tagtggatta acaaaaacca gtacgtcgtt gcctcgcctt agctcaaaga gaacgattct
    18481 ctaaggtgct gaagcaccaa gtgaaccggt tccgtactat ttgtactgtc tgcggcttcg
    18541 ttgccttgtc ctgattttta ttaatccact atacaacgtc ggtatcggca gcggcgcgct
    18601 gctgggacat tgggtaacgc aatactcggg catttcctgc atcggcgttg cgggtatgct
    18661 ggcggcggca ggtttgtggg tctgcctgaa tttgaaccgc catatccgaa cctgaccgcg
    18721 cgatgccgtc tgaagcccct cccgcccttc agacggcatt ttgattgaag aaatatccgc
    18781 ccctgcttaa aataacaggc tttgccgtgt tttaacgcct attttttgtt ccaaggatgg
    18841 tttatgccgt tgctgtctgt cgagttcgca ctgttctttc tcgctttcct gccgatttac
    18901 tggggcttgg cgaaataccc gtccgcccaa aacctgctgc ttctggctgc cggtatgggc
    18961 tggctctacc atatcggccc cgtatttgcg gcaatcatcg tcctttattc ctcctgcgtg
    19021 taccttttgg gcgaactgct ccgttccgat cgcgaaaata cgcgccgctt ttggctgggg
    19081 tgcggcattg ccgcctcgct gaccgtcttg ggctttttca aatatttcga ctttttccgg
    19141 ccgctgattg cccaatatgc cggaaaaggc ggcgcaatcg acatcctgat gccgctgggg
    19201 ctttcgtatt acaccttcca gtcgctcgcc tatcttgttt actgcttccg cgccccgcac
    19261 gccgcgcgtt tcagctggca cgagctgctg ctgcacctga gttttttccc caccgttacc
    19321 tccggcccga ttatccgcgc cgccgcattc aaaagcgcag acggcgagca ggcaggcgca
    19381 ttggcgcaaa tccgtacccg ccaaccgcgc tcacccgtcc gccccgcact cgccgtttcc
    19441 ctgattctgc tgggtattgc caaaaaatgg tggctggcgg ggatgctcgc agaaaactgg
    19501 gtgtcgcccg tgtttgaaaa ccccgcccaa ttcaacggct ggggcgtgtt ggcgggcgtg
    19561 tacggctata ccttccaact cttcctggac ttttccggat attccgattt ggttatcggc
    19621 atggcgatgc tgctgggctt ccgactgccc aaaaacttct ccgcaccgct tcgtgccgcg
    19681 aatatccgtg cattttggga caaatggcac atcagccttt ccacctggat acgcgactac
    19741 atctacatcc ccttgggcgg cagcaaaaaa ggctttttgc ggacacagct caacctgatg
    19801 gcggcaatgg tactctcagg catctggcac ggctacggct ggaacttcct catttggggc
    19861 gcgctgcacg gcacggcgct ggtgctgctc aacacgggcg atcgctattt cggacgcaac
    19921 gcgctatgcc gtctgaaata ccttgcgccg ctctcgtggt ttgttacctt ccatttcgtc
    19981 tgccttagct ttgttgtctt caataccgca agccccgacg atgcaggcgc agttttcaat
    20041 gccctctttg ccaatgccaa cggctggaat gcgccgcaac aggcaaacat gctgctgctt
    20101 gcctcgtttg catccgtgat gctgctctac ccttacctgc aacgcgcttt cgacggcgcg
    20161 gtcaaaggtt tggaaaaaat cccgatgtgg ctgtggttta tcccgatttc catcatcctg
    20221 ctgctgatta tcgtccttgc cccctcgggg atacccggtt ttatttatgc caatttttaa
    20281 gggtttggac atgaaacact ttctttccct tttcgcttcc atattgatgt ctgccctgat
    20341 tgccgcgtgg tttgcccaaa acccgatcaa tgcctactgg cagcagacct accaccgcaa
    20401 cagcccgctc gaaccgcttg ccgcctacgg atggtggcgg agcggtgcgg cgttgcaaga
    20461 aaacgcctac accctttcag acggcatcaa agccttcctg tccggcgaaa cgccgccgac
    20521 ggctcaagac ggcggttcgg cagatatgcc gcctgaagcc gccgcatccg aagccgcccc
    20581 tcaaaccggc gaaatccaag aatggaaaca ggacaccgac accgccgccg tccgcagcgg
    20641 cgacaaagtc tttttcgccg gcgactcgct gatgcagggc gttgcaccct tcgtgcaaaa
    20701 aagcctgaaa cagcaatacg gcatcgaatc cgtcaacctc agcaaacaaa gcacggggct
    20761 gtcctacccc tcattcttcg actggccgaa aacgattgaa gaaaccctga aaaaacatcc
    20821 cgaaatcagc gtgctcgccg tcttcctcgg cccgaacgac ccgtgggatt tccccgtcgg
    20881 caaacgatac ctcaaattcg cttccgacga atgggcgcaa gaatacctga aacgcgtcga
    20941 ccgcatcctt gaagccgcac acacgcaccg cgtccaagtc gtctggctcg gcatccccta
    21001 tatgaaaaaa gccaagctcg acgggcagat gcgctacctc gacaaactgc tttcggaaca
    21061 tttgaaaggc aaaatcatcc tgattcccac cgcgcacacc ctgagcggcg gggaagaccg
    21121 ctacaccgac tccgtcaacg tcaacggcaa acccgtccgc taccgcagca aggacggcat
    21181 acactttacc gccgaaggac aaaaactgct ggcggcaaaa ataatggaaa aaatcgtttt
    21241 tgaaccaagt acgcaaccat caagtacaca gccatgaacc ccaaacacct catcgcattt
    21301 tccgccctgt tcgccgccac gcaggcagaa gccctgcccg tcgcctccgt cagcctcgac
    21361 accgttaccg tttccccgtc cgccccctac accgatacaa acgggctctt gaccgactac
    21421 ggcaacgccg ccgcctcgcc ttggatgaaa aaactccgat ccgtcgcaca aggcagcggc
    21481 gagaccttcc gcatcctgca aatcggcgac tcgcataccg ccggcgactt ctttaccgac
    21541 agcctgcgca aacgcctgca aaaaacttgg ggcgacggcg gcataggctg ggtttacccc
    21601 gccaacgtca aagggcagcg catggcggcc gtccggcaca acggtaactg gcaaagcctc
    21661 accagcagga acaatagcgg agacttcccg ctcggcggca tcctcgccca caccggcagc
    21721 ggcggcagca tgaccctgac cgcatcggac ggcaagaccg gcaaacagcg catctccctg
    21781 tttgccaaac ccctgctcgc cgaacaaacc ctgaccgtca acggcaacac cgtctccgcc
    21841 aacggcggcg gctggcaggt actggatacg ggcgcggcac tgcccctgac catacacacc
    21901 gaaatgccgt gggacatcgg cttcatcaac atcgaaaatc ccgccggcgg cattaccgtt
    21961 tccgcgatgg gcatcaacgg cgcacaatta acccagtggt cgaaatggcg tgccgaccgt
    22021 atgaacgacc ttgcccaaac cggcgccgat ctagtcatcc ttgcctacgg taccaacgaa
    22081 gccttcggcg acaacatcga cattgccgac actgaacaaa aatggctgga taccgtccgc
    22141 caaatccacg acagcctgcc tgccgccggc atcctcatca tcggcgcgcc cgaatccctg
    22201 aaaaacacgc tcggcgtatg cggcacacgc cccgtccgcc tgaccgaagt ccaacagatg
    22261 cagcggcgca tcgcccgtca ggggcagacg atgttctggt cttggcaaaa cgcgatgggc
    22321 ggcgtttgca gcatgaaaaa ctggctcaac caaggatggg ccgccaaaga cggtgtacac
    22381 ttctccgcca aaggctaccg gcgcgcggcg gaaatgctcg ccgacagcct cgaagaactc
    22441 gtccgcgccg ccgcaatcag gcaataatcg gacaggaggc ggacggtatt tccgcaacag
    22501 ggggatgccg tctgaaacgc ataccttcat attgcttcag acggcattcg cctcagacat
    22561 tggaaagacg caggcgaacc tccggcatac ggcgcaaagg cggcgtttga tatgccgtct
    22621 gaaggcaaag atgataaact gccgccttcc gttttcatac ggcatattgt tttcaaatga
    22681 gggcgttcgc cgtccgcaac cataaaggaa gtttcatgaa ccggacttat gccaatttct
    22741 acgaaatgct cgccgccgcc tgccgcaaaa acggcaacgg cacggcagtg ttcgacggca
    22801 aggaaaaaac cgcctaccgc gcgctcaagc aggaggccga agccgtcgcg gcgtatctgc
    22861 aaaatatcgg cgtgaagttc ggcgacacgg tcgcgctggc ggtttccaat tccacagaat
    22921 ttattaccgc ctatttcgcc gtctccgcca tcggcgcggt cgccgtaccg atgaacacat
    22981 ttttgaaaaa cagcgaatac gcgtatatcc tgaacgactg caaggcgcgc ttcctgttcg
    23041 cctcggcggg cctgtcaaaa gagttggcgg gcttgaaggc gcaaacgccc gtcgaaaaaa
    23101 tcatttggac ggacaaaagc cgtccggccg gcgaaatggc ggaaggcgat gccttttttg
    23161 aagacgtgcg ccgcttcccc gaaaaacccg acttgggccg ccaaccccgg ataaatgatt
    23221 tggcacacat catctacacc tccggcacga cggggcatcc caaaggcgcg ctaatcagtt
    23281 acgccaacct gttcgccaac ctgaacggca tcgaacgcat ctttaaaatc tccaagcgcg
    23341 accgctttat cgttttcctg ccgatgttcc acagcttcac gctgacggct atggtgctgc
    23401 tgccgattta tatggcgtgt tcgattattt tggtcaaatc cgttttcccg ttttccaacg
    23461 ttttgaaaca ggccctgctc aaacgcgcga ccgtgttttt gggcataccc gcgatttaca
    23521 ccgcaatgag caaggcgaaa atcccttggt atttcagatg gttcaaccgc attcgcctgt
    23581 ttatcagcgg cggtgcgcct ttggcggaac aaaccatcct cgatttcaaa gccaagttcc
    23641 cccgcgccaa attgctggaa ggctacggac tgagcgaagc ctctcccgtc gtcgccgtca
    23701 atacgcccga gaggcaaaaa gcccgcagcg tcggcatccc cctgcccggt ttggaagcca
    23761 aagccgtcga tgaagaattg gtcgaagtgc cgcgcggcga agtgggcgaa ctgatcgtca
    23821 ggggcggttc ggtgatgcgg ggctacctca atatgcctgc cgccaccgat gaaaccatcg
    23881 tcaacggctg gttgaaaacg ggcgatttcg ttaccataga cgaagacggc tttatcttta
    23941 tcgtcgaccg caaaaaagat ttgattattt ccaaaggtca aaacgtctat ccgcgcgaaa
    24001 tcgaagaaga aatctacaaa ctcgatgccg tcgaagccgc tgccgtcatc ggcgtgaaag
    24061 accgttatgc cgacgaggaa atcgtcgcct tcgtccaatt gaaggaaggt atggatttgg
    24121 gcgagaacga aatccgccgc cacctgcgta ccgtgctggc aaatttcaaa atccccaaac
    24181 aaatccactt taaagacggg ctgccgcgca acgctacggg caaggtattg aaacgggtgt
    24241 tgaaggagca gtttgacgga aacaaatgaa cgccgtgccg tccgaagccc cgtccggcaa
    24301 aaaaaatgcg gtgaatctgc ttcaccgcat tttttggcaa acgccggagc gaggatattt
    24361 actctgccaa ttccacctgc tcgtgcgcca tcagttcctg accgacatca tccaacaaca
    24421 tcaaataacg ttcgtagttt ttcaaaatgt cggcaatcag ctcgtccttg ttcatatact
    24481 gcacatcgta cccgacgcgc ccgtcgaaaa aataagcgta gggtttgtaa gttgtctgat
    24541 gccggatatg cggcaggttg ccgtcgttaa tcaactggtc ggatacatcc tgcccgacag
    24601 acttaatccc gtacataaaa tcgcgcatcg tctctttccg aatgacgaac tcgattgcgg
    24661 gctcgtcctg atgaaacatc ttatcgaccc ggacgctcaa gccgtattct tccgaaagct
    24721 cccgttgcaa ctcgtgcata gcgggcgatg cggtatgttt gaggaatttt aaaatatcct
    24781 gctcctgcgt ctggctcatt atctgcacca gccgttcttt ccacttgccg cccgtccaaa
    24841 atacactggt agggttaacc cgggtctcaa aatatttctt atccgcactc aatcctttcc
    24901 acaggctgaa acacattatc agcatcagca gggcaaacgg cagggaaaca atcagggtca
    24961 tagactgcag gttgcctagc ccgcccgagc gcatcagcaa aacggcaacg gcagacatca
    25021 gcacgcccca cataaccgcc tgccaccgtg gtgcgctcaa gcccttgtcc cgagaggtaa
    25081 tattgttcag gacataaatc ccggaatcgg cagaagttac aaaaaacagg gaaatgacca
    25141 gcaggctgac gatgctcgtc aattcgggca gggggaggta attaaagaat ttaaaaagca
    25201 gcgtttccgg agaggaggtc atcttttcga gcattccccc cgcaaccccg tcattcagcc
    25261 aaatcgccgt attgccgaag acggtaaacc acaaaacgcc gaacaggccg gggatgagca
    25321 aaaccccgaa gacaaactcg cggatggtgc gcccctttga aatacgcgcg ataaacaaac
    25381 ccacaaacgg cgcccaagaa caccaccacg cccaataaag caccgtccaa gattcaaacc
    25441 acggcttgtg ttcccgttcg tacgcataag ttttaaaact gaggcgcacc agattttcga
    25501 ggtagttccc tatgttgtcg ccgaatgccg acaacaggta aacagtgggg cccgccgcca
    25561 aaacaaaaaa cagcagcaaa aacgcaaggc tcaggttcaa ctcgctcaac accttcacgc
    25621 ccttccccac gccggatatt gccgaaacga cggcgaggga catgacggcg gcgataatca
    25681 aaacctgcac gctgaagctg ttttcggcaa tccagcccat ttcctgcaat ccggcgccca
    25741 gttgcgaagc cccgaacccc aatgtggtga tgatgccgaa aaaagtagca agcaacgcca
    25801 taatatcaat ggcatcgccg aaccttccgg aaattttttc tttcaacagg gggtaaaaac
    25861 aagaacgcag ggcaagcggc agcttgtagc ggaaaccgaa ataagccaaa gccaatgcaa
    25921 tcgtaccgta caccgaccaa gcgtgaacgc cccaatggaa caccgtgtgc agcaatgcct
    25981 gctgctgcct gtgttccggc gtgccggccg taatgtccga aaaataatgc atcaacggct
    26041 ctgccacgcc gaaaaacatc agacccacgc ccatcccggc cgcaaacagc atcgccagcc
    26101 acgacaggaa gccgaattcc ggcacatctt catcccgtcc gagcctgatg tttcccaaac
    26161 tgctgaccga gagtatcagc aggaaaccca gaaaaatgga aaacgttaaa acataaaacc
    26221 agctgaactc ggtaaaaatg acttcttttg cccgatcgag ccacatctgc gcctgatccg
    26281 gcacggttaa aaccaatacc accaaaacac acacaaaaaa caaagtcgtc aaaataacca
    26341 tcggattaaa tgacgttcgg cgttctataa attcagacag ggacaaacct tctcactcct
    26401 ttgttaaaaa cagacaaacc cggtcatcgg gcaaagcggt caaaacctgc cggtaaaata
    26461 ccggcttccg gatgacgaaa tgcacaaacc ggccgaaatt gttataatcg aaaaaattaa
    26521 aaatcaatac ggattattct atcagattga tttatcgata tttattatat cattaatata
    26581 gtttgatttc aaaccggcgg aaaatgcgcc gcccaccgca ggcgcgccct ccccgctatc
    26641 ggggcgttta acgccggatt gccgatgcgg tacaatggct gatatgaaga aaattacccc
    26701 tcaaaacctg cgccccctgc tttcggaaag cttgggacat accgattttg tcaacgtcct
    26761 caacgcactg attaaatttt tgcgccgtgg cggcaaaaaa tgtgcggggg aacgtttcga
    26821 cctgattatc gacacattca aacaagacag ggaattgctg tcccgcttca gccggtgttt
    26881 ttacatctgg ctcgcgcaaa tacacattta tccggcactc atcaaactcg gcatcttctc
    26941 gcgccacagc tttgcccggg aaatgggcat acgcatctac gaacgcttca gcccgtcata
    27001 taaagatttt gccaacttgg gcgaagtctt cctttatctt ttccattccg aaaacgacga
    27061 caaatggctg caaacgctca atatccgcca atggctggtt ttatacgaac tcatccggag
    27121 ccacgccgaa ccgtccaaat tgcagacggc gggcatccgc cttgccgatg cgcgtttgcg
    27181 cgccatcgaa atgctgtctg tctggacggc atccgaagcc atcgaacccg acctcatccg
    27241 catcgccccg cgcctgctgg aagccgattc ttccttcgtc gccctccaac gcgaaaccgc
    27301 caaactggtc gaacactacc gcaacggcac cacgccttac gacaccgccc acctcgaagt
    27361 gatgttcgac caatgtttca gccagattga ctatttgcgc cgcaaaggga cgggcgccgg
    27421 ctccggttcg tcggtcaaag tcgcccacct gctcgaacgg ctccggcaga ccgtagaccg
    27481 tctaaagctg ctcaccgaca tccaaaccgg tgccggcaac agcaaccgcc tgaccatcgc
    27541 gctgatgaac tccctcatct acgcggcggt cgaacaatac agcacccgcc acctgcgccg
    27601 cagcagcatc cgtatgctcg cccgcagcat taccgaaaac aaaagccacc acggcgaaca
    27661 ctacatcacc cgcaaccgca aagaatattt caaaatgttc tactcggcgg caggcggcgg
    27721 catcatcatc gccctgatgg cgctgctcaa aatccgcatc ggcacactcg gcctcagccc
    27781 cttcctgact tccttgtcgg ctgggttcaa ctacggcatc ggctttatga tcatccatat
    27841 gctgcactgc accgtcgcca ccaaacagcc cgcgatgact gccgccagct ttgccgaaca
    27901 ggtcgacctc aacgaaggcg gcaaagcggt ggacaacaaa ctcgccaagc tcctcatcga
    27961 cgtatgccgc tcccaaagtg tcgccgtctt cggcaacgtt tccatcgcca tccttttggc
    28021 gtgcgccata tcgttcggct atgcccatct gcaccaacag cccatactcg atgcccacac
    28081 cgccgcctac cagttcaaat ccatagacat catcgcttac ccgacgctgt ggtatgccgc
    28141 cattgcaggt ctgtggctgt tctgctccgg catcatcgca ggcttcttcg acaaccgcgc
    28201 cgactacctc aacctgcgcc aacgcctgcc cttcaacccc ttgctgcgta aaataatgcg
    28261 ccccggaccc cgccgcgtcc tcgccgccta catccacaaa cactacggct cgctggtcgg
    28321 caacttcatc ttcgggatgc tcttgggtat gactggctat ttcggacacc tcctcgggct
    28381 gccgctggac atccgccacg tcgccttttc ctccgccaac ctcggctatg ccgctgtcag
    28441 cggcaacgtc ggtttgggca cgttcgtact cggcattttc agcgtcctcg ccatcggctt
    28501 ggtcaacctc tgcgtcagct tcagcctcgc cctcttcgtc gccctgcgct cgcgcggcac
    28561 gaaaatcggc agcatccgca atctgattaa gagtttttgg aatcagatta aaagcaatcc
    28621 ctgcatactt ttcctcccgc ccgccaaaga acagggacat cctccttcgg acaagccttg
    28681 accgacaatg ccgtctgaag cgggattcgc cccgaatacc gccctgatgc gggaaatccc
    28741 cataaa
//
LOCUS       DAWGNT010000004        28172 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.004, whole genome shotgun sequence.
ACCESSION   DAWGNT010000004 DAWGNT010000000
VERSION     DAWGNT010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 28172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28172
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.004"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(192..472)
                     /gene="traL"
                     /locus_tag="WHR98_000106"
                     /pseudo
     CDS             complement(192..472)
                     /gene="traL"
                     /locus_tag="WHR98_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235803.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system protein
                     TraL"
     gene            complement(494..790)
                     /locus_tag="WHR98_000107"
     CDS             complement(494..790)
                     /locus_tag="WHR98_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraA"
                     /protein_id="HEZ2306850.1"
                     /translation="MKIKQTTVAKYAAVFAFAFAVNLAMAATTGAEFKGLADMVSGWS
                     EGYLGMSLGLTAFLIGLAVGLMKQTVMPCIVGLGVGLAATLGPGIIKGMFTLII"
     gene            complement(845..1366)
                     /locus_tag="WHR98_000108"
     CDS             complement(845..1366)
                     /locus_tag="WHR98_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEZ2306851.1"
                     /translation="METIKNTLFVASTMILTACAAPKQEVAELPQDATYTVEQNKLGE
                     FVFCRNEECSGFERKVLAEQPVYAQTQINLQKEEIRVFFNLGSSHLGAEGVKTLKRVL
                     PKLKNTQTVYLRGWADSIGGRNTAINRRLAKQRAAVIGKWLRKHNVTAKIRTASSPAC
                     CNSDDTRTVVITW"
     gene            complement(1336..1797)
                     /locus_tag="WHR98_000109"
     CDS             complement(1336..1797)
                     /locus_tag="WHR98_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEZ2306852.1"
                     /translation="MRLRAILLQFVVPGVLVLTSTRAVAFCYKEAGSKYGIDPAMLQS
                     IALTESAFRPNIESHTADIGLMGINRSWLPVLHKKFGLTEADVWNPCTNVHIGAWILA
                     NSYRQYGKSWEAVGAYNAACTKLKGRACYRARMTYANKVYQNWKRLKTRSS"
     gene            2305..2724
                     /locus_tag="WHR98_000110"
     CDS             2305..2724
                     /locus_tag="WHR98_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306853.1"
                     /translation="MNETDLPKLLSVINRFTNIDKNWSCVLLFWIQRATGYLEMMTLD
                     DDENTATFLIEKLEKLLEPLPIDIDNTTFAEALADDFEILFLMAQYGSEYWNSLEESF
                     EEFCIRHTTQPNQLIADIPHAKKEKVTMWIKSLLKLS"
     gene            2721..5282
                     /locus_tag="WHR98_000111"
     CDS             2721..5282
                     /locus_tag="WHR98_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HEZ2306854.1"
                     /translation="MKTSLLTIASSLMLVSGSMLYLINTRKSTDSVSHNDEVAHINQN
                     IVNDRFRILNAHELIQVLDLSPQISGIKMNLGLSDENWSKDALPFLEKYIAFVQRLPA
                     SESHHHAGDGGLVRHTLDVAALALVASTSQSWPPNAKTEEIAKKTAVWRYGIMCAALL
                     HDVGKTVTGFQVELFDSAISLEKLLWLPDTGSMAESGKLYYRVEFPDAKSAYSTHAEI
                     AWTFFQALVPSHVRQWLATTDPNLMITLRNYLSGKKDGSPLEQLIKNADMTSVSRDLR
                     SGSRQRFSTAKRKPFIETIMETLKEMLSDRGVHFSIATTAGGDLFRKSDRIYLMSKNV
                     PDYIRQYLRKNQHPAAGSFPADNQRIFDTLFEYRAVIPPENDPHRAINHIEVEFTRMD
                     GEKIRNIFSVLCFNAKTLYPDGDYPTEFLGNLSEVSAKKEIPDVVVSEDKVSTQTQDA
                     EDSSVTMTKDKMDFLSIQPVIAEQPPLPEKNQTETANTAFDNSKNTAAPAKNKSSESE
                     KAKELGYSTIDNLIENFNLIEADSEQTESTNSEAETAENAVNLVQENIRVEVKTETED
                     KPRAEVKETETDNSPKTIKAGTKASRKKLADLFADNRKPIGKTAEPEPECAQIKTTET
                     VTHQIDSEAVPLPESESAQNGMRELEQLRLREPTSSPRPVQVMDDSEGLDSLASGAKN
                     MAELEAIVSERNLKKQSETESTEIVEDSVKAKHMEARDRGMQFLRWLADGLGDGSIAV
                     NRSGATVHFIEQGMLLVTPAVFRDYAGGVFNKSDTESLGPLTQKGFEALRLHARTKKS
                     SLHRVLTTNGSNRRLFYCYLIPEHNIKHIIQPGSRPQNNTDIKLDESDLLVMEQK"
     gene            5279..7321
                     /gene="traD"
                     /locus_tag="WHR98_000112"
     CDS             5279..7321
                     /gene="traD"
                     /locus_tag="WHR98_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HEZ2306855.1"
                     /translation="MSAHFPENVYLSPYEWISVAAYSTTAVSVAHLPVPPTIAYGSLA
                     IFSLVSVKRALSALRIMRFRKNIRKLPYYALTADEIPSSDKALFLGKGFRWTQTHTQR
                     LFMVRQPENDGLRNPSKLYKGARKHEIETMGTDWISRITRKSAWWNPVAPLPPVGGSP
                     ELHGIEIEEDDIWEDLRERVGHKVVLGTTRVGKTRLCETMIVQDIRRGDVTIAFDPKG
                     DADLMTRMYVESQKSNRPFYMFHLGFPEYSCRYNPIGDYGRITEVATRIANQLPSEGQ
                     SAAFRDFVWRFVNVLTKTMEGLSIKPSYENIYKSAANVDELAGDYFKKILEKHHPGWE
                     KDFDNFDMPESEAKSAVKTGRNLDTMKLGSFLKAKKHNEPLIDALGGILSNDRSYFEK
                     LVSSLYPLLEKLTTGEVAKLISPDTEDLSDPRIIMDWRKVMESNAVVYIGLDSLSDAE
                     VAAAVGNAMFADLTSLAGQIYKFGHGVGQSGKTQKRKVSIHADEFNELIGDEFIPLLN
                     KAGGAGYQVTVYTQTWKDVEAKIGSPAKAGQIGGNLNTMIMLRVKTVETAEMLTNQLP
                     EVKIMTSTLVSRAGDVAFPDSHEDFSSGNEDRIGAETVPMLTPADLTQLPKGQAFALI
                     EGGQLYKIRLPLPKKDKQEKIPAHIGEMAANMREVYRLSQPSAEENAFTEGSSYAV"
     gene            7311..8006
                     /locus_tag="WHR98_000113"
     CDS             7311..8006
                     /locus_tag="WHR98_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017147078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4400 domain-containing protein"
                     /protein_id="HEZ2306856.1"
                     /translation="MPSNTSAWYMNSLPLKFLFLPFKAIYTLFLIVLLIFGSSVLTQN
                     YFGTGNLLEDEIKWSESVGHDAFPGKEVGDTINLQIARLSYKGLKTVFFDLTLVNESL
                     KAKSEADFGYKFKNYLVPRMKYLQQFDTTLKVISLRLGNLALIVGISVIFAIPVLIDG
                     LVMRAIRQENASRESAGIYHRAKYWRTGIIWLGCMIYMCVPISIPPYLLYLPLVAAIW
                     MIFMQAKYLKKYL"
     gene            complement(8501..9016)
                     /locus_tag="WHR98_000114"
     CDS             complement(8501..9016)
                     /locus_tag="WHR98_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306857.1"
                     /translation="MKSKLPLILINFSLISSPLGANAAKIYTCTINGETVYTTKPSKS
                     CLSTDLPPIGNYSSERYIPPQTSEPTPSPSNGGQAVKYKAPVKTVSKPAKSNTPPPQQ
                     APSNNSRRSILETELSNERKALVEAQKMLSQARLAKGGNINHQEINALQSNVLDRQQN
                     IQALQRELGRM"
     gene            complement(9482..11404)
                     /locus_tag="WHR98_000115"
     CDS             complement(9482..11404)
                     /locus_tag="WHR98_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEZ2306858.1"
                     /translation="MIEIKNLTLQRGLKVLLDKANATVNPGQRVGLIGKNGTGKSSLF
                     ALIKGEITQDGGDVSIPKNWRLASVSQETPDLDISALDYVLQGDAELQTLQTALRQAE
                     AQNDGMKQAEYHAKLEEIDAYTAPARAAKLLNGLGFSQEEHSRPVKSFSGGWRMRLNL
                     AQALICRADLLLLDEPTNHLDLETVLWLENHLASLPCTQIIISHDRDFLNAATTQTIE
                     LSQQKLTQYGGNYDFYQNERAQRLAQQQAAYVKQQAQIKHLQSFIDRFKAKATKAVQA
                     QSRMKALAKLERIAPAHLDSEFSFEFYNPEHLPNPLLKLEHADLGYEGKTVLHDITLS
                     LESGARYGLLGVNGSGKSTFIKALAGKIDLLSGSIVRSEKLNIGYFAQHQLDTIRADQ
                     NPVWHIQQLSPEVREQEIRNFLGGFNFVGDMALQKTEPFSGGEKARLALAMIIWQKPN
                     LLLLDEPTNHLDLDMRHALTLALQSFQGALIAVSHDRSLLEATTDSFLLIDKGRLKNF
                     DGDLNDYRQWRLAQENAAAAPAASAQSQSRKDTKRIEAQIRQEKARRGKPIQQKIDRA
                     EKEMAQLSEIQTACEAFLAQEDAYLEANKEKLQNTLSLLTKVKTQLAQIEEVWLACQE
                     ELERIETEIEKQFAER"
     gene            complement(11481..11876)
                     /locus_tag="WHR98_000116"
     CDS             complement(11481..11876)
                     /locus_tag="WHR98_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mth938-like domain-containing protein"
                     /protein_id="HEZ2306859.1"
                     /translation="MMRRRGKKMLFEENPIDGQFAEYECGAGGIRLARQSFHKPVLVH
                     KDSVCLSQCRTLSDLTPENLLSDIKPVDYPEILIIGTGAAQEFIHPKIMADFSRIGIS
                     VECMNTDSAFRTLVFLHSEGRRAWAWLQP"
     gene            12049..13356
                     /locus_tag="WHR98_000117"
     CDS             12049..13356
                     /locus_tag="WHR98_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEZ2306860.1"
                     /translation="MKPVNIGLLGLGTVGGGTAAVLRDNAEEISRRLGREIRISAVCD
                     LSEEKARQTCPSAAFVKDPFELVAREDVDVVVELFGGTGIAKDAVLKAIENGKHIVTA
                     NKKLLAEYGNEIFPLAEKQNVIVQFEAAVAGGIPIIKALREGLAANRIKSIAGIINGT
                     SNFILSEMREKGSAFADVLKEAQALGYAEADPTFDIEGNDAGHKITIMSALAFGTPMN
                     FSACYLEGISKLDSRDIKYAEELGYRIKLLGITRKTGKGIELRVHPTLIPESRLLANV
                     NGVMNAVRVNADMVGETLYYGAGAGALPTASAVVADIIDIARLVEADTAHRVPHLAFQ
                     PAQVQAQTILPMDEITSSYYLRVQAKDEPGTLGQIAALLAQENVSIEALIQKGVIDQT
                     TAEIVILTHSTVEKHIKSAIAAIEALDCVEKPITMIRMESLHD"
     gene            13349..13783
                     /locus_tag="WHR98_000118"
     CDS             13349..13783
                     /locus_tag="WHR98_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306861.1"
                     /translation="MTEPKHEMLTKEQVAARKKAKAKIRTIRIWAWVILALLALTALL
                     SQCAMSKPQAKQKIVESCVKNIPFAEKWQNDLRARGLDSNNTRLAVDYCKCMWEQPLD
                     RLSEKQIRSFGKLGAQEQLDLLGGANAFEARDKQCVADLKSE"
     gene            complement(13842..14111)
                     /locus_tag="WHR98_000119"
     CDS             complement(13842..14111)
                     /locus_tag="WHR98_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEZ2306862.1"
                     /translation="MNKSELIEAIAQEADISKAAAQKALDATTNAVTTALKQGDTVTL
                     VGFGTFYVGERAERQGRNPKTGEPLTIAAAKTPKFRAGKALKDAL"
     gene            complement(14293..16743)
                     /gene="lon"
                     /locus_tag="WHR98_000120"
     CDS             complement(14293..16743)
                     /gene="lon"
                     /locus_tag="WHR98_000120"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEZ2306863.1"
                     /translation="MTQKEKHFEEYAALATLPLRDVVVYPHMVLPLFVGRPKSIAALE
                     NAITREEPVFLLAQTDAALEEPVAADLYQTGTVAQVLQVLKLPDGTVKVLVEGLYRGR
                     VLTIEDTGGLFVSHIETVVEEDTGGNTDLEAVRRTLLAQFEQYAKLNKKIPAEIIGSI
                     NGIAENSRLTDTVAAHLQLKLAQRQQILEIPEIGKRMEFLLAQLESELDIMQAEKRIR
                     GRVKRQMEKSQREYYLNEQIKAIHKELGEEDENGELDALEAGIKKAGMSKEAEEKCLS
                     ELKKLKMMPPMSAESTVVRNYIDTLLELPWKKKSRVSKDIAKAGLVLDTDHYGLEKVK
                     ERILEYLAVQKRMDKLKGPILCLVGPPGVGKTSLGESIAKATGRKYVRMALGGVRDES
                     EIRGHRRTYIGSMPGKILQNMAKAGVKNPLFLLDEIDKLGSDFRGDPASALLEVLDPE
                     QNNKFADHYAEVDYDLSDVMFIATSNSLNIPTPLLDRMEIIRLSGYTEDEKINIAMQY
                     LVPKQMKRNGVKEGELAIEESAVRDIIRYYTREAGVRSLDREIAKICRKVVMQITLDE
                     DSKTKKTGKAKPRAVKVNEKNLHDYLGVRRFDYGVAESENRIGQVTGLAWTEVGGELL
                     TVEAAALPGKGVIQCTGQLGDVMKESVSAAWSVVRSRAESVGLAPDFYEKKDIHVHVP
                     EGATPKDGPSAGIAMTLAMVSAFTKIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAL
                     RGGIKHVLIPKDNLKDLEEIPENVKTGLTIHPVKWIDEVLALGLESQPEPWAEPSGAE
                     AAAESASKPKPRSRATKH"
     gene            16994..18097
                     /locus_tag="WHR98_000121"
     CDS             16994..18097
                     /locus_tag="WHR98_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEZ2306864.1"
                     /translation="MSSFIFPDNGAEWRNESVQKPPKGWHYVRESGADGILKAAYQNI
                     ATVWQGDFHNAKQVLSAMKKRVLKPAAVRSDADIAALFHAHRMKQAQQSRILNMLAVE
                     IRPGFVLDNKRAPDIRAALLDVYGEADGKPFFLPLNLLLGFMGAHEWHKKGVAVPQLG
                     GSIHVPFGVFSPLRGEYLDLLAHAPSTGFQTAFDIGTGSGVLAAILAKQGIPSVIGTD
                     TNPKAVACARANIARLGFEKQVEIRETDLFPEGFADLIVCNPPWLPAKPTSAVESALY
                     DPESAMLAAFLRDAPKHLNPDGEIRLIISDLAEHLGLRPADFLEKAFIRAGLRVADMM
                     KTKPKHKKAANPSDPLAFARTRETTFLYRLKKA"
     gene            complement(18125..19870)
                     /gene="recD"
                     /locus_tag="WHR98_000122"
     CDS             complement(18125..19870)
                     /gene="recD"
                     /locus_tag="WHR98_000122"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HEZ2306865.1"
                     /translation="MERQTDEFAQAAARAAIRFLEHYAGSGDEVLANCTERLFQALQN
                     GHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRLFLGRMWQLEYDLAAEIKRLAAA
                     DTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
                     LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDEPEAVRRHLLKLEGQTVHRLL
                     KLRPPKMQAAFDHIRPLPLDVLVIDEASMLDTALMLQLLKAVKTGARVILLGDENQLP
                     SVGIGAVLSVLSHKTVLDGETHQRLAGFLPEHGFSVSANPPVLAQNTAHLSFSHRFGD
                     NSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGN
                     IEAAYAGISDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYA
                     LELFNGDIGLIMEDVGRQGSLAAYFADADGFKKVAVSCLPDFEPAFAMTVHKSQGSEY
                     REVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAAATVKTR
                     QTALGSMLERVFSQE"
     gene            complement(19938..20633)
                     /gene="lolD"
                     /locus_tag="WHR98_000123"
     CDS             complement(19938..20633)
                     /gene="lolD"
                     /locus_tag="WHR98_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HEZ2306866.1"
                     /translation="MSELILKCEGVGKRYRDGGLDVRVLHGLDLEIRAGESTGIIGSS
                     GSGKSTLLHILGGLDMPSEGRVLLMGEDLRTLNQRRLGDLRNRHLGFVYQFHHLLPEF
                     SALENVMMPLLIGKKSREEAAEAAMAMLEKVGLKHRSTHRAGELSGGERQRAAIARAL
                     VTQPKCLLADEPTGNLDRANARNVLDMMLELKTELGTGLVVVTHDDELAGRFERVMVM
                     KDGSLHPKQGANA"
     gene            complement(20626..21873)
                     /locus_tag="WHR98_000124"
     CDS             complement(20626..21873)
                     /locus_tag="WHR98_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HEZ2306867.1"
                     /translation="MFSLEAWIGLRYLRAKKRNGFMSFITMVSIAGIALGVTALIVVL
                     SVMNGFQKEIRGQLLNVAPHAEIGYIDNTDTDWRNLLRFTENRKGILAAAPYVSNQAL
                     LANAGEIRGVQMRGILPSEERKVVEYGDKMPAGKFEDLIPGEFDIILGVGLAEALGAE
                     VGNKVTVITPEGNVTPAGVVPRLKQFTVVGLVKTGVYEVDNSLAMTHIQDARVLYRLD
                     KEVAGLRLKLADPQNAPALTATLIPEAQRDAVWVRDWTYNNRSYFEAVELEKRMMFII
                     LTLIIAVAAFNLVSSLVMAVTEKQADIAILRTLGLSPGGVMKIFMVQGAFSGFFGTLA
                     GVVCGVLLGWNVGRVVAFFENLLGVHLINSQVYFIDYLPSDVDMGDVALIACISLGLS
                     FVATLYPSRRASKTQPAEALRYE"
     gene            22078..22356
                     /locus_tag="WHR98_000125"
     CDS             22078..22356
                     /locus_tag="WHR98_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306868.1"
                     /translation="MNIRTAFALCAIALSAAAAAYAKEIKIDANNTPYSEADAQKLAA
                     TAVGMGVKEPISLNGGSGSITVSGSSATQCVFKVGNGGALQIQGLNCK"
     gene            complement(22412..23029)
                     /gene="recR"
                     /locus_tag="WHR98_000126"
     CDS             complement(22412..23029)
                     /gene="recR"
                     /locus_tag="WHR98_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEZ2306869.1"
                     /translation="MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEK
                     LVDALQTALKQVYHCAMCNTFCEGGLCDICADETRDGRRLMVVHMPADVSNMEAANCH
                     DGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
                     FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA"
     gene            complement(23096..24634)
                     /locus_tag="WHR98_000127"
     CDS             complement(23096..24634)
                     /locus_tag="WHR98_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HEZ2306870.1"
                     /translation="MFHSIEKYRTPAQVLLGLIALTFVGFGVSTVSHPGADYIVQVGD
                     EKISDHSINNAIQNEQADGGGPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV
                     DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNSVLVGDAQ
                     AEQLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVA
                     LNLKDFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFN
                     KAKEKLGDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDV
                     LKKKHNSEVLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAK
                     DVLTQLNGGKAVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLP
                     APVIVEVQAVTPPDDIAAQLPLAKQALAQQQSANTFDLLIRYFNGKIKQTKGAQSVDN
                     GDGQ"
     gene            complement(24689..25063)
                     /locus_tag="WHR98_000128"
     CDS             complement(24689..25063)
                     /locus_tag="WHR98_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase"
                     /protein_id="HEZ2306871.1"
                     /translation="MIILHGIPNCDTVKKAKNRLAGYGLEFEFRDFKKQMPSEAEICS
                     WLEQVPLATLLNKRGTSWRKLDAGTQQKVLSSTAEAVKLMSEMPSLIKRPVLECGGRV
                     YVGFSEETYDGIFNRQALCRQG"
     gene            25202..26830
                     /locus_tag="WHR98_000129"
     CDS             25202..26830
                     /locus_tag="WHR98_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HEZ2306872.1"
                     /translation="MISTNGITMQFGAKPLFENVSVKFEEGNRYGLIGANGSGKSTFM
                     KILGGDLEQTAGEVAIENGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAMTERDAI
                     YANPEATEDDYMKAAELEAKFAEYDGYTAEARAAELLSGVGISEDLHNATMAEVAPGF
                     KLRVLLAQALFSKPDVLLLDEPTNNLDINTIRWLEGVLNQYDSTMIIISHDRHFLNEV
                     CTHMADLDYNTITIYPGNYDDYMLASAQSRERALKDNAKAKEKLQELQEFVARFSANK
                     SKARQATSRLKQADKIKSEMVEVKPSTRQNPYIRFEADEKAKLHRQAVEVEKLAKRFE
                     TQLFKNLNFILEAGQRLAIIGPNGAGKSTLLKLLAGAYNPEYSDGLLPDEGSIKWAEK
                     ASVGYYPQDHENDFDVDMDLSEWMRQWGQDGDDEQVIRGTLGRLLFGSNDVVKKVKVL
                     SGGEKGRMLYGKLLLLKPNVLVMDEPTNHMDMESIESLNMALEKYNGTLIFVSHDRQF
                     VSSLATQIIELDGKGGYEHYLGDYESYLEKKGVA"
     gene            26902..28155
                     /locus_tag="WHR98_000130"
     CDS             26902..28155
                     /locus_tag="WHR98_000130"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HEZ2306873.1"
                     /translation="MQTYLVGGAVRDYLLGLPVKDRDWVVVGADAQTMLAQGFQPVGK
                     DFPVFLHPETHEEYALARTERKTAKGYVGFSFHADKDVTLEQDLMRRDLTINAMAQDA
                     DGKIIDPFGGQRDLAAGILRHVSPAFAEDPVRILRTARFAARYKFEIAEETIKLMRQM
                     VENGEADALVAERVWQEFAKGLMEKNPRKMIEVLRECGALKVLLPEVNALFGVPQRAD
                     YHPEIDSGIHTLMTLQRAADMGLSLPERYAALLHDLGKAKTPSDILPRHHGHDLAGVE
                     PVREVNQRLRAPKHCAELAELVCRWHIIFHQVGQLKSQTILNVLKKTDAFRRPERFQT
                     ALNVCIADTQGRLNREHTPYPQRAHWLALLEAANQADSGKIAAECRSQGKAHLIAEQI
                     DRARLAQIAPLQKAFRAAQDKTEKH"
BASE COUNT         6985 a         7092 c         6937 g         7158 t
ORIGIN      
        1 aaaagcgatg tttgatacag tcattgaccg ccggatttcc ggcggagtca gcgtcgtttg
       61 aacaatcgta cctttgaaga gcagagtcgc ggacaaaaat agattgacag ctatagacat
      121 tcccaaaagt atccaaaaaa agacctttat gccggttctt atcgccaatt cactcaacat
      181 attttcagtc ttcaatttag aaactcccgt ttatttgttt caggtatccg tttgtttttt
      241 tcattaatgg gtaagtacca gtaaagaaca tgcaaaaaaa ccattgatgc ttaccagact
      301 taagcttgcc ccacctccat gcaatgaaaa ggctaattga catggaaatg aaaaagtgac
      361 gagagacaat acctataccg aagccggaca taaataatat aaaaacgtcc aagtcccaaa
      421 taaatgcttt tttgggatcg tctatcgata ccggcacatg aaaatctctc atcacttctc
      481 ttatctagtt tgattaaata atcaaggtaa acataccttt aatgatgccc gggcccaatg
      541 ttgcagccag gccaacacct aagccgacga tacatggcat gacagtttgt ttcatcagac
      601 ctacggccaa accgatcaag aatgcagtca agcccaaaga catacccaga tagccttcag
      661 accagcctga taccatgtcg gccaagcctt taaattcagc gccggttgta gcggccattg
      721 ccaagttaac ggcaaaagca aatgcaaaca cggctgcata ttttgctact gtagtttgtt
      781 tgattttcat aaagaacctc ataaatagag cttgtatcgc caagcttttg cgtccgatca
      841 ttctttacca agtgattaca acagttcgcg tgtcatcact attgcagcag gcaggggaac
      901 ttgctgttct tatttttgcg gttacattat gtttcctcag ccatttacct attactgcag
      961 cccgttgttt agccaaacgt ctattaattg cagtattacg accaccgata ctgtcagccc
     1021 agccgcgtaa ataaaccgtc tgagtatttt tcaatttagg cagaacacgt ttgagcgttt
     1081 tcacgccctc cgcaccgagg tgtgaactgc ctaaattgaa aaacaccctg atctcctctt
     1141 tttgaagatt gatttgtgtt tgagcataaa ccggttgttc cgccaaaacc ttgcgctcaa
     1201 atcctgaaca ctcttcattg cggcagaaga caaattcgcc cagcttattt tgttccactg
     1261 tataagttgc gtcttgagga agctcggcca cttcctgttt tggggcggca caggctgtca
     1321 gaatcattgt ggaagctacg aagagcgtgt ttttaatcgt ttccaatttt gatatacctt
     1381 atttgcgtaa gtcattcttg cgcgatagca tgcccggcct ttaagtttgg tacatgcggc
     1441 gttataagca ccaactgctt cccatgattt cccatattgc cgataactat ttgccaatat
     1501 ccatgcacca atatgtacat ttgtgcatgg attccataca tccgcctctg ttaaaccaaa
     1561 tttcttgtgg agtacgggta gccatgaacg gttgataccc atcaagccaa tatcagctgt
     1621 atgactttca atattcggtc tgaaagcact ctcggttaat gcgatcgatt gcaacatggc
     1681 aggatcgatg ccatatttgc tgccggcttc cttataacaa aaagcaactg ctcttgtaga
     1741 tgtgagtacc aaaacacctg gtacgacgaa ctgtaaaagt atggccctta atctcatgtc
     1801 tttactgtcg ttgtatatat gactaatttt tatctcgatt cgacaatttt tgttaaatca
     1861 aacgaaatta actaaatttt ttagaaatgt ttctttaaaa atagatatgg tataattaaa
     1921 agttgcgctt atattttatg aaattaccaa ttcataacat attgatataa aaggaatatg
     1981 ataagggtaa aggctcttat ccaaaagcca aaaggccgtc tgctaaaaaa aatcgcagcc
     2041 ggcctttttt taaaagctgt aacggtaaag caacagcctt aatggttaaa ggaaaaggct
     2101 taaggggaaa ggataaaagt taaaggtaaa acaaaggcct gcatgtaaaa atgcaggcct
     2161 ttgtctatta aaaggggcat cattatacct tataaatctt attttgtgac aattctaatt
     2221 aaaataacct tttttacttt gatttttgac atggtaactt ttttattata tgaatagttt
     2281 aacaaccctg tctttttaat caaaatgaat gaaacagatc ttcccaagct tcttagtgtc
     2341 ataaatcggt ttacgaatat cgataaaaac tggtcttgcg tattgttgtt ttggatacag
     2401 cgtgctaccg gttatctgga aatgatgacg ctggatgacg atgaaaatac ggcaaccttc
     2461 cttatcgaaa aactagagaa acttctagag ccactgccga tagatattga taacacgact
     2521 tttgcagaag cacttgccga tgactttgaa atcttatttc taatggctca atacggttct
     2581 gaatactgga attcacttga agaaagcttt gaagaatttt gtattagaca tactacgcaa
     2641 cctaatcaat tgattgctga tattccacat gcaaaaaagg aaaaagtcac catgtggata
     2701 aaatctttgc ttaaattatc atgaaaacaa gccttctcac tattgcatcc tcactaatgc
     2761 ttgtcagcgg ctcaatgcta tacctgataa atacgagaaa aagtacagat tccgtgtcac
     2821 ataatgatga ggttgcccat atcaatcaga acatagtaaa tgatcggttt cgcattttaa
     2881 acgcgcatga actgattcag gtgctcgact taagccctca aatatccggt attaagatga
     2941 atttagggtt atcggatgaa aactggagta aggatgccct tccctttttg gaaaaatata
     3001 tagcctttgt tcaaaggctt cccgccagtg agtctcatca ccatgcaggt gatggtggtt
     3061 tagtccgcca tacactcgat gtagctgcac tggctcttgt ggcatctaca tcgcaatcat
     3121 ggcccccaaa tgccaaaacc gaggaaatag cgaagaaaac cgccgtttgg cgttatggaa
     3181 tcatgtgtgc tgcccttctt cacgacgttg gtaaaactgt gacaggattt caggttgaac
     3241 tgtttgattc agctatcagt ctcgaaaaat tattatggtt gcctgataca ggctccatgg
     3301 ctgaaagtgg caagctttat tatcgtgtcg aatttcctga tgcaaagtct gcttacagta
     3361 cacatgccga aatcgcctgg acattctttc aagctttggt tccttcacat gtcagacaat
     3421 ggcttgccac aacggatcca aatttaatga ttactttgag aaattatctg agtgggaaaa
     3481 aggatggcag tcctcttgag cagttaataa aaaatgccga tatgacctca gtttcaaggg
     3541 atttacgaag cggcagccgt caacgcttct ctaccgccaa gcgtaaacca ttcattgaaa
     3601 ccattatgga aacattgaag gaaatgttat ccgatagagg agtccatttc agcatcgcaa
     3661 caactgccgg tggtgacctg ttccgtaaga gtgatcgcat ctatttgatg tcaaaaaatg
     3721 tacctgacta catccggcag tatttgagga aaaatcaaca tcctgctgca ggctcatttc
     3781 cagctgacaa ccaaaggata tttgacacat tattcgagta ccgtgccgtc attccgccgg
     3841 aaaacgatcc tcacagggca attaaccata tagaggttga gtttacccgt atggacggtg
     3901 aaaagatccg taatatcttc agtgtacttt gtttcaatgc caaaaccttg tatccggatg
     3961 gagattatcc gactgagttc ttaggtaatc tttcagaagt ttccgccaag aaggaaatac
     4021 cagacgttgt agtatcagag gataaagtgt caactcagac acaagatgcc gaagatagct
     4081 cagtcaccat gaccaaggac aaaatggact tcctgtctat tcaaccggtg atagcagaac
     4141 aacctcccct acctgaaaaa aatcaaactg agacagctaa cacggctttt gacaacagta
     4201 agaatactgc tgctccagcg aaaaataaat ctagcgagtc agagaaagct aaagaactgg
     4261 gttacagcac aattgataac ttaattgaaa actttaacct gatagaagct gattcagaac
     4321 aaacagaatc aaccaactca gaagctgaga cagcagaaaa tgccgttaac ctggttcaag
     4381 aaaatataag agtagaagtt aaaactgaga cagaagacaa acctcgcgct gaggttaaag
     4441 aaactgagac agataattca ccaaaaacaa ttaaagcagg aaccaaagca agccgtaaga
     4501 aacttgccga cctttttgca gacaatcgta aacctattgg aaaaacagct gaacccgaac
     4561 ctgaatgtgc acagattaaa acaactgaga cagtaactca tcaaatagat tctgaagcag
     4621 ttccattgcc tgaatctgaa tcagcacaaa atggtatgcg tgaactggag cagctaagac
     4681 taagagaacc tacatctagt ccacgcccag ttcaagtcat ggatgactct gaaggtttag
     4741 atagccttgc aagtggggca aaaaatatgg ccgaactcga agccatagtt tctgaacgta
     4801 atttgaaaaa gcaatcagaa acagagtcga ccgaaatagt cgaggattca gtcaaagcca
     4861 aacatatgga ggccagagac cgtggaatgc agtttttacg atggctggca gatggattag
     4921 gagacggcag catagctgtc aatagaagtg gtgcaacagt ccactttatt gaacagggga
     4981 tgcttttggt tacgccagcc gtatttcgag attacgccgg cggcgtgttc aataaatctg
     5041 atacggaaag tctaggccct cttacacaaa aaggctttga ggctttgagg ttgcatgcaa
     5101 gaacgaaaaa aagctcattg catagggttc taactacaaa tggtagcaat cgcagactct
     5161 tctattgcta ccttatccct gaacataata tcaaacatat catacagcca ggttcaagac
     5221 ctcagaataa taccgatatt aaattagatg aatccgactt attagtaatg gaacaaaaat
     5281 gagtgcccac ttccctgaaa acgtttatct atcaccctat gagtggatca gtgtagccgc
     5341 atactccacc acagcggttt cagtagcaca tttgcccgta cctccgacaa ttgcttatgg
     5401 cagtttagct attttttcgt tggtttcagt caaacgcgcg ctatcagcat tacgcattat
     5461 gcgtttccgt aaaaatattc ggaagttgcc ctattatgcc cttactgctg atgaaattcc
     5521 ttcttctgat aaagctcttt ttcttggaaa aggatttaga tggacacaga cacataccca
     5581 acgtcttttt atggttcgcc agcctgagaa cgacggactt cgtaacccct caaaactcta
     5641 taagggagcg cgaaaacatg agattgagac aatgggtaca gactggattt ctcgtataac
     5701 tcggaaatcg gcatggtgga atccggttgc tcccttacct ccggtcggag gttctcctga
     5761 attacatggc attgaaattg aggaagatga tatttgggaa gatttgaggg agcgtgttgg
     5821 ccacaaggtt gtattgggca caacccgcgt tggtaaaacc cgactatgcg aaaccatgat
     5881 tgttcaggat attcggcggg gggatgttac gatcgcattt gatccaaagg gtgatgctga
     5941 cctgatgact agaatgtatg tcgaatcgca aaaatcaaac aggccatttt atatgttcca
     6001 tttgggtttc cccgagtaca gttgccggta caaccctatc ggtgattatg gtcgtattac
     6061 cgaggtggcg acaaggattg caaaccaact gccttctgaa ggtcagtctg ctgctttccg
     6121 agattttgta tggcgtttcg tcaacgtttt aacgaaaacc atggaaggtc tatccattaa
     6181 accaagctat gaaaatatct ataagtctgc tgcaaatgta gatgaacttg caggggatta
     6241 ctttaaaaag atattagaga aacaccaccc tggttgggag aaagacttcg acaattttga
     6301 tatgcccgag tctgaagcaa aaagcgcagt caaaactggg cgcaacttgg acacaatgaa
     6361 gctcggttct ttcttgaagg ccaaaaagca taacgaacct cttattgacg cattgggtgg
     6421 tattttgtcc aatgacagat cctattttga gaagctagtc agctccctgt atccattgct
     6481 ggaaaaactg acgactggcg aagttgccaa gcttatcagc ccggatacag aggatttgtc
     6541 agatccaaga atcattatgg actggcgcaa agtcatggaa tcgaatgccg tcgtctatat
     6601 tggattggat tccctatctg atgccgaagt tgcagcagcc gttggtaatg cgatgtttgc
     6661 tgacttaacc tctcttgcgg gtcagatcta taaattcggc catggagttg gacagagtgg
     6721 aaaaactcag aaaagaaaag tctcaattca tgcagacgaa ttcaatgaat taatcggtga
     6781 cgaattcatt ccgttattga ataaggccgg tggtgccggc taccaagtga cggtttatac
     6841 acaaacatgg aaagacgtag aagccaaaat tggttcccca gctaaagcag gtcaaattgg
     6901 tggtaacttg aatacgatga ttatgcttag ggtgaaaact gtcgaaacag cagagatgct
     6961 gacgaatcag ttgccggaag tcaaaattat gaccagcact ctagtctcaa gggctggtga
     7021 tgttgccttc cccgatagtc acgaagattt tagcagtgga aacgaagaca ggattggtgc
     7081 tgagacagtt cctatgctga cacccgccga tttaacccaa ttacccaaag gtcaagcatt
     7141 cgcgcttatt gaaggtggcc agctatataa aattcgactc cctctaccca aaaaggacaa
     7201 gcaggagaaa atccctgcgc atattggaga aatggcggct aatatgcgcg aagtttacag
     7261 actaagccag ccttcggctg aagaaaacgc atttacggag ggaagtagtt atgccgtcta
     7321 atacaagcgc atggtacatg aattcattgc ctttaaagtt cttatttctc ccgtttaaag
     7381 ctatttatac cttatttttg attgtgttac ttatctttgg tagttcggtg ttgacacaaa
     7441 actattttgg taccggtaat ctcttggaag atgaaatcaa atggtctgag tctgttggcc
     7501 atgatgcgtt tccaggaaaa gaggttggcg atactataaa tctgcaaatt gccagactta
     7561 gttacaaggg gctgaaaacc gtattttttg acctgacatt agtcaatgaa tcactaaaag
     7621 ccaagtcaga agccgatttt ggttacaaat ttaaaaatta tttagtcccc cgtatgaaat
     7681 atctacagca attcgatact acgttgaagg ttatttcctt acgtttggga aatttggcat
     7741 taatcgtggg tatctcagta atctttgcaa ttccggtttt gatagatggt ttagtaatga
     7801 gagccattag acaggaaaat gcctcacgag agagtgcagg catttatcac cgtgcaaaat
     7861 actggagaac agggattatt tggttgggtt gcatgattta tatgtgtgtt ccaatatcaa
     7921 taccgcccta cttgctctat ttacctttag tagcagcaat ttggatgatt ttcatgcaag
     7981 ctaaatatct taagaaatat ctctaggctt ccagtagaat ctaaatagtg cttttttagt
     8041 tcattaaacg ggggcttaat gctttaactg acggtacaga aatctcgaaa agcattttgc
     8101 aaaatactta aaataagagt atagtaaaaa tgaaatattt caagtttaac taatagttaa
     8161 caaactagag taaacaatcg taatcgttaa atctggctat agttcgcata atatatatta
     8221 tgcgaactat cggaaacagt tgtacgtgtc cctgtggtct ttccaagtag gaaaattaaa
     8281 gtatggacaa tgcggctgaa tgtatagccc ggagcatccg cgtatccgaa ggtactgaac
     8341 gatatgccct gcatcccttt cgacgcttcc atccagccgg tattgggaaa tacgttgacc
     8401 ttcaatacga tatacaggca gccgacacac aggatatgcc gctgcttttt catcatttct
     8461 tctgtcaaat ccttggaaca gttgatttga aaacacggct ttacatacgt cccaattctc
     8521 tttgcagtgc ttggatattt tgctgcctgt ccaatacatt gctttgcaat gcgttgattt
     8581 cttgatggtt gatgttgccg ccttttgcca gacgtgcttg tgataacatt ttttgggctt
     8641 caaccaatgc tttgcgttcg ttgctcaatt ctgtttcgag aatggagcgt ctgctgttgt
     8701 ttgagggtgc ttgttgcggc gggggcgtat tggattttgc cggcttggat actgttttga
     8761 ccggggcttt atatttgaca gcctgtccgc cgtttgacgg tgatggtgtc ggttcggatg
     8821 tttggggcgg gatatagcgt tcgctgctgt agttgccgat tgggggcaaa tcggttgaga
     8881 ggcagctttt ggacggcttg gtggtgtaaa cggtttctcc gttgattgtg caggtgtaga
     8941 ttttggccgc attcgcaccc aatgggcttg aaatcaggga aaagttgatt aggattaagg
     9001 ggagttttga tttcataatg tgcttgatgc tcggataatt atttgatttt ttggtatttt
     9061 ttgtaatgct ttcttggcgt tttacgggct tttcttttcg gttggttgct tttgattttc
     9121 tttcggggct ttggcagcct gcttgttctt tttcccggca ggttttttgt ttttcttttt
     9181 actttctatg tgtattttgg cttcttaact gagtttttta attttcaggc ggtatccgcc
     9241 tccctgatgg ctgctgattt taggtaaatc cgcatcggcg cacgatcctg ctggggctga
     9301 tgtatatacg cttttgccat ttgagttgca atggtatacg gaggcttgcg ccgccgcgcc
     9361 ggaaagggac aggagaccca aggcggcaaa aagtctgatg tttataccgg taaaaggcgg
     9421 tgataacgcc cgaattatac cgttattggc aggcaaagat aagcaccctg tccgcgcttc
     9481 tttatcgctc ggcaaactgt ttctcgattt cagtttcaat ccgttccaat tcttcttgac
     9541 aagccagcca aacctcttcg atttgggcaa gttgtgtttt gacttttgtc agcagggata
     9601 aggtattttg caatttttct ttgtttgctt caaggtaagc gtcttcttgt gctaaaaatg
     9661 cttcacatgc cgtctgaatt tcggaaagct gcgccatttc tttttcggca cggtctattt
     9721 tctgctgtat cggcttgccg cgtcgggctt tttcctgacg gatttgcgct tcgatgcgct
     9781 tggtgtcttt gcggctttgg ctttgtgcgg atgctgcggg tgcggcggcg gcgttttcct
     9841 gtgccaaacg ccattggcgg taatcgttca aatcgccgtc gaagttcttc agacggcctt
     9901 tgtcgatcag gaggaagctg tcggtagtcg cttcaagcag gctgcggtcg tgcgatacgg
     9961 cgattaatgc gccttggaaa ctttgcaacg cgagcgttaa ggcgtggcgc atatccaagt
    10021 ccaaatggtt ggtcggttcg tcaagcagca acaggttcgg cttttgccag ataatcatgg
    10081 caagggcaag gcgggctttt tctccgccgg aaaaaggttc ggttttctgt aacgccatat
    10141 cgccaacaaa attgaagccg ccgaggaaat ttcggatttc ttgttcgcgt acttcgggag
    10201 aaagctgctg aatatgccaa acagggtttt ggtcggcgcg gatggtatcg agttggtgtt
    10261 gggcaaaata gccgatattg agtttttcgg aacggacgat gctgccggag agcaaatcga
    10321 ttttgcccgc caaggctttg ataaatgtag atttaccgct gccgttgaca cccaataaac
    10381 catagcgcgc gccgctttcc agcgacaggg taatgtcgtg caaaacagtt ttgccttcgt
    10441 aacccaaatc tgcgtgttcc agcttcagca aaggattggg cagatgctcg ggattgtaaa
    10501 actcaaagga aaactcgctg tccaaatgcg cgggagcgat gcgttcgagc tttgccaaag
    10561 ccttcatgcg gctttgcgcc tgaacggctt tggtggcttt ggctttgaag cggtcgataa
    10621 aggattgcag atgtttgatt tgcgcctgct gtttgacata ggcggcttgt tgctgcgcga
    10681 gacgctgcgc gcgttcgttt tggtaaaaat cgtaattgcc gccgtattgc gtgagctttt
    10741 gctgggacaa ttcgatggtt tgggtggttg ccgcattgag gaaatcgcgg tcgtgggaaa
    10801 tgatgatttg cgtgcagggt aaagaggcaa ggtggttttc cagccacaag acggtttcta
    10861 aatccaagtg gttggtcggt tcgtcaagca agagcaaatc ggcgcggcaa atcagggctt
    10921 gcgcaagatt caggcgcata cgccagccgc cggaaaagga tttgacggga cggctgtgtt
    10981 cttcttgcga aaaacccagc ccgttcaaca atttcgctgc acgggccggc gcggtataag
    11041 cgtcgatttc ttccaatttg gcgtgatatt ccgcctgttt cataccgtcg ttttgcgctt
    11101 ccgcctgcct caatgccgtc tgaagggtct gtaactcggc atcgccctgc aaaacgtaat
    11161 ctaaagcgga aatatccaaa tcgggcgttt cttgggaaac ggaagcgagc cgccagtttt
    11221 tcggaatcga gacatcgccg ccgtcctgag tgatttcacc cttgattaag gcaaacaggc
    11281 tcgatttgcc cgtcccgttt ttgccgatca aaccgacgcg ctgaccggga ttgacggtag
    11341 cgttggcttt gtcgagcagg actttcaaac cgcgttgcag ggtgaggttt ttgatttcaa
    11401 tcataacgga aacatcgtcg ggcgggaaaa gcccgtattt tacctgaaaa tcagtgccga
    11461 tgccgtctga aatgggaaat ttacggctga agccaagccc aagccctgcg cccttccgag
    11521 tgcaggaaaa ccaatgtcct gaatgccgaa tcggtattca tgcattccac gctgattccg
    11581 attcgggaaa aatccgccat gattttggga tggataaact cctgagccgc gcccgtcccg
    11641 ataatcaata tttccggata gtcaacaggt ttgatgtcgg acaacaggtt ttccggagtc
    11701 agatcggaca aggttcggca ttgcgacagg cagaccgaat ccttatgtac aagcacgggt
    11761 ttatggaaac tttgcctcgc cagccggatt ccgcccgcac cgcattcata ttccgcaaac
    11821 tgtccgtcta tcggattttc ttcaaacaac atttttttac cccgtcgccg catcatctac
    11881 accgaaaggg gtgcaaaatc agacaaattc atgtaggatt ggcagatttc atctgacccg
    11941 cctgccgatt tcagacggca tttgattcaa agtgcggcac aattatatcg gcagcggata
    12001 ttttcgtctt tcaatattta catttcagtc ggcttacaag gagacacaat gaagccagta
    12061 aacatcggtc ttttaggttt gggtacggtc ggcggcggta cggctgccgt gttgcgggac
    12121 aacgcggagg aaatttcccg ccgcttgggg cgcgaaatcc gtatttctgc cgtgtgcgat
    12181 ttgagtgaag aaaaagcccg acaaacctgc ccgtccgcag cctttgtcaa agatccgttc
    12241 gaactggtcg cacgtgaaga cgtcgatgtc gtcgtcgaat tgttcggcgg taccggcatt
    12301 gccaaagatg cggtgttgaa agccattgaa aacggcaaac acatcgttac cgccaacaaa
    12361 aaactgctcg ccgaatacgg caacgaaatc ttcccgctgg cggaaaaaca aaacgtcatc
    12421 gtccaatttg aagcggcagt agcgggcggt atcccaatca tcaaagccct gcgcgaaggt
    12481 ttggcggcaa acaggattaa atccatcgcc ggcattatta acggcaccag caacttcatc
    12541 ctctccgaaa tgcgcgaaaa aggcagcgcg tttgccgatg tactgaaaga agcgcaggca
    12601 ttgggttatg ccgaagccga tccgaccttc gacatcgaag gcaacgatgc gggccataaa
    12661 atcaccatca tgagcgcact ggcattcggc acgccgatga acttttccgc ctgctacctc
    12721 gaaggcatca gcaaactcga cagccgcgac atcaaatacg ccgaagaact tggctatcgc
    12781 atcaaactgt tgggcattac ccgcaaaacc ggcaaaggca tcgagctgcg cgtccaccct
    12841 accctgattc ccgaaagccg cctcttggca aacgtcaacg gcgtgatgaa cgccgtgcgc
    12901 gtcaacgccg atatggttgg cgaaacctta tattacggcg cgggcgcggg cgcattgccg
    12961 accgcttccg ccgtggttgc cgatatcatc gacatcgccc gcctggttga agccgatacc
    13021 gcccaccgcg taccacatct agcattccaa cccgcgcaag tccaagcgca aaccatcctg
    13081 cctatggacg aaattaccag cagctactac ctgcgcgtcc aagccaaaga cgaaccgggc
    13141 acactggggc aaatcgccgc gctgttggca caagaaaacg tgtccatcga agccttaatc
    13201 caaaaaggcg tgattgatca gaccactgcc gaaatcgtga ttctgaccca cagcacggtc
    13261 gaaaaacaca tcaagtcggc aatcgcagcc atcgaagcac tggattgcgt ggaaaaaccg
    13321 attaccatga tccgcatgga aagcctgcat gactgagccg aaacacgaaa tgctgacgaa
    13381 agagcaggtt gccgcgcgca aaaaagcaaa agccaaaatc cgcaccatcc gcatttgggc
    13441 gtgggtcatt ttggcgttgc tcgctttaac cgccctgctc tcccaatgcg cgatgtccaa
    13501 accgcaggca aaacagaaaa ttgtcgagtc ttgcgtgaag aatattccgt ttgccgaaaa
    13561 atggcaaaac gatttgcggg cccgcggttt agattcaaac aatacccgcc tcgccgtcga
    13621 ctactgcaaa tgtatgtggg agcagccttt ggacagattg agcgagaaac agattagatc
    13681 cttcggcaaa ctcggcgcac aagaacagct tgacctgctc ggcggcgcaa atgcctttga
    13741 agcgcgagac aagcagtgtg ttgccgattt gaaatcagaa taatgtggac cgataaaaaa
    13801 gccgattctt taaagaatcg gcttttttca taaaaaacgg cttacagtgc gtctttcaat
    13861 gctttacctg cacggaattt aggcgttttg gcggcggcaa tggtcagagg ctcgccggtt
    13921 ttggggttgc ggccttggcg ttccgcacgt tcgcccacgt agaaagtacc gaaaccgacc
    13981 aaagtaacgg tgtcgccttg tttcagggcg gtggttactg cattggtagt ggcatccaaa
    14041 gctttttgtg cggcggcttt ggaaatgtcg gcttcttgag caatcgcttc gatcaattca
    14101 gacttgttca caatcagtcc cttcctgtct taaaaaatga tgaaatgccc gaatactcgg
    14161 ggtttgtact gcttgagcaa ctttcgcttt atagcaattc tgaaattgcc gtgtcaagca
    14221 aaaaatacgg aatcacccta tttgacaggc tttcaggacg aaaccgcatt tttacaacac
    14281 atttcctgcg tttcaatgtt tggttgccct gctgcggggt tttggttttg aagcggattc
    14341 cgccgccgct tccgcaccag aaggttctgc ccaaggctca ggctggcttt ccaaacccag
    14401 agccaatacc tcgtctatcc atttgaccgg atggatggtc aggccggttt tcacgttttc
    14461 agggatttct tccaagtctt tgaggttgtc ttttggaatt aaaacgtgtt tgatgccgcc
    14521 gcgaagcgca gccaacagtt tttccttcag accgccaatc ggcaggactt cgccgcgcag
    14581 ggtaatttcg cccgtcatgg caacatcggc gcgcaccggg attttggtga atgcagacac
    14641 catcgccaaa gtcatggcaa tgcccgcact cggaccgtct ttcggcgtcg caccttcggg
    14701 aacatggaca tggatgtctt ttttctcgta aaaatcagga gccaagccca ctgattccgc
    14761 gcgggagcgg acaaccgacc acgctgcgga cacggattcc ttcatcacat cgcccaactg
    14821 gccggtgcac tgaatcacgc ccttacccgg caatgctgcg gcttcgacgg tcagcaattc
    14881 gccgccgact tccgtccacg ccaaaccggt tacttgtccg atacggtttt cgctttcggc
    14941 aacgccgtaa tcgaagcggc gcacacccaa atagtcgtgc agatttttct catttacttt
    15001 aaccgccctg ggcttggctt ttccggtttt tttggttttt gagtcttcgt ccaaggtaat
    15061 ctgcatcacc accttgcggc agattttggc aatctcgcgg tcgagcgaac gcacgcccgc
    15121 ctcgcgggtg tagtaacgga taatatcgcg caccgcgctt tcttcgattg ccaattcccc
    15181 ttcttttacg ccgttgcgct tcatttgctt cggcacgagg tactgcatcg cgatattgat
    15241 tttttcgtct tcggtatagc cggacagacg gatgatttcc atacggtcga gcagcggtgt
    15301 cgggatattc aggctgtttg aagtcgcaat aaacatcaca tcgctcaaat cgtaatccac
    15361 ttcggcataa tgatcggcga acttgttgtt ttgctcggga tcaagcactt cgagcaacgc
    15421 gctggcggga tcgccccgga agtcgctacc caatttgtcg atttcgtcga gcaggaacaa
    15481 tgggtttttt acgccggctt ttgccatatt ctgcaaaatc ttaccgggca tggagccgat
    15541 ataggtgcgg cggtgtcccc ggatttcgct ttcgtcgcgc acgccgccca aagccatgcg
    15601 gacatatttc cgccccgttg ctttggcgat ggattcgccc aaagaggttt tgcccacgcc
    15661 tggagggccg accaggcaca gaatcgggcc tttgagtttg tccatacgtt tttggacggc
    15721 gaggtattcc aaaatccgtt ctttgacttt ttccaggccg tagtggtcgg tatccagcac
    15781 caatccggct ttggcgatgt ctttgctgac gcgggatttt ttcttccacg gcagttcgag
    15841 cagggtgtcg atgtagttgc gtacgacggt ggattcggca gacatcggcg gcatcatttt
    15901 gagttttttc agttcggaca ggcatttttc ttccgcttct ttgctcatcc ccgccttttt
    15961 gatgcctgct tccaaggcat ccagttcgcc gttttcgtct tcttcgccca attctttgtg
    16021 tatcgcttta atctgttcgt tcagataata ttcgcgctgg gatttttcca tttggcgttt
    16081 gacgcgtccg cgtatgcgtt tttcggcctg cataatgtcg agttcggatt ccagctgtgc
    16141 cagcaggaat tccatccgtt tgccgatttc gggaatttcc aaaatctgtt ggcgttgcgc
    16201 cagtttcaac tgcaaatgcg ctgcgaccgt atcggttagc cggctgtttt cggcaatgcc
    16261 gttaatgctg ccgataattt cggcggggat ttttttattg agtttggcgt attgttcaaa
    16321 ctgcgccaac agggtgcggc gcacggcttc gaggtcggta ttgccgcccg tgtcttcttc
    16381 cacgaccgtc tctatatggg aaacgaacag accgcccgtg tcttcaatgg tcagaacacg
    16441 tccgcgatac agcccttcga ccaatacttt taccgtgccg tcgggtagtt tcaacacttg
    16501 caggacttgt gcgaccgtac cggtctgata caggtcggcg gcaaccggtt cttctagcgc
    16561 cgcatcggtt tgcgccaaca ggaaaaccgg ctcctcgcgg gtaatggcgt tttccagtgc
    16621 ggcgatggat ttcggcctgc cgacaaacag cggcagaacc atatgcgggt aaacgacgac
    16681 atcccgcaaa ggaagggttg ccaaggcggc atattcctca aaatgctttt ctttttgtgt
    16741 cataggtact ctcttgtgtc tgacagattg ccgattttcg cgtacattgg ggttgaaggt
    16801 attatttcaa gcatatgtgg tttatttatg gagtttgatg cgatgccgtc tgaaacattc
    16861 cggcttcaga ctgcatgggc ttggaaagac aaggcgggaa caaaaaactg ttctgtgttg
    16921 ccgctccttg ctgtaccatc cgtatggttt acggttctgc cgccctattt tcaaaacatg
    16981 acgcaggtat cccatgtctt cttttatttt tcccgataac ggggccgaat ggcgcaacga
    17041 aagtgtgcaa aagccgccca aaggttggca ttatgtccgc gaaagcggtg cagacggcat
    17101 tttgaaggct gcctatcaaa atattgcaac tgtctggcag ggcgatttcc acaatgccaa
    17161 acaggtgctt tccgcaatga agaagagggt tctcaaacct gccgccgtcc gttccgatgc
    17221 ggatatcgcc gcccttttcc acgcccaccg tatgaagcag gcgcagcaga gccgtattct
    17281 gaatatgctt gccgttgaaa tccgccccgg ttttgtgttg gacaacaaac gcgcgcccga
    17341 tatacgcgcc gccctgctcg acgtgtacgg agaggcggac ggcaaaccgt ttttcctacc
    17401 gctcaatctg ctgctggggt ttatgggtgc gcacgagtgg cataagaaag gggttgccgt
    17461 tccgcagctg ggcggcagca tacacgttcc tttcggcgta ttctcgccgt tgcgcggcga
    17521 atacctcgac ctgctcgccc atgcgccgtc aacgggtttt cagacggcat tcgatatcgg
    17581 gacgggctcg ggcgtgcttg ccgccatttt ggcgaaacag ggcattcctt ccgtcatcgg
    17641 cacggatacc aatccgaaag ccgtcgcctg cgcccgtgcc aatattgccc gtttgggctt
    17701 tgaaaaacag gttgagatac gggaaaccga tctgtttccc gaagggtttg ccgatctgat
    17761 tgtctgcaat ccaccctggc ttcccgccaa gccgacttcc gccgtcgaat ccgcgttata
    17821 cgaccccgaa tctgcgatgc tggctgcgtt tttgcgggat gcgccgaaac atctgaatcc
    17881 cgacggagaa atccgcctga ttatttccga ccttgcagag catttggggc tgcgccctgc
    17941 cgattttttg gaaaaggcat ttatccgggc gggtttgcgt gttgccgata tgatgaaaac
    18001 caagccgaag cacaaaaaag ccgcgaatcc gagcgatccg cttgcttttg cgcgaacccg
    18061 ggaaaccact ttcctatacc gtttgaaaaa ggcataaggg gcggcggcgc ggcattcggg
    18121 cggattattc ttgtgaaaat acccgctcga gcatactgcc caatgccgtc tgacgcgttt
    18181 tgacagtggc ggcagcttgc cggaaggttt cttctccgcc gaagaatacg aacttctccc
    18241 tcgcgcgggt aatggcggta tataacagct ccttactcaa tccggacaat gcatcgtccc
    18301 cttcgtccga aggtgcggcg gaaggcggca gcagccagac ttcccgatat tccgaacctt
    18361 ggcttttgtg gacggtcatg gcgaatgcgg gttcgaaatc gggcaggcag cttaccgcta
    18421 cctttttaaa tccgtccgca tcggcaaaat aggcggcaag gctgccctgc cgtccgacat
    18481 cttccataat caatccgatg tcgccgttga acagttcaag cgcgtagtcg ttctgtctga
    18541 tcataatcgg ttctccggcg aaataggcct gatgttccgg tatgttcatt ttgcggcgta
    18601 catggctgca ataggcttcg ttgaagtctt ccgcatcctg ccgccaagct gccaggacca
    18661 cgatatccga gatgcctgcg tatgcggctt cgatattgcc gtcttttacc gcctgccaat
    18721 aggctttgtg cgcccggtac aacctttcga ctcgagcgtt cggactgcat tccgaatgtt
    18781 ccagttcgtc cggaaaccgg tcaaacaatg cccacgcccc ctcatcgccc gatacggcgg
    18841 cacgggcaag gcagccgatg ccactgttgt cgccgaagcg gtggctgaac gacagatggg
    18901 cggtgttttg cgccaacacg ggcggatttg cgctgacgct gaaaccgtgt tccggaagga
    18961 agccggccag cctttggtgc gtttctccgt ccaaaacggt tttgtgcgac aaaacggaca
    19021 gcaccgcccc gattccgacg gacgggagct ggttttcatc ccccagcaga atcacgcgcg
    19081 cgccggtttt gaccgctttt aaaagttgca acatcaatgc ggtatccaac atggaggctt
    19141 catcgataac caatacgtcc aacggcagcg gacggatatg gtcgaacgcc gcctgcattt
    19201 taggcgggcg cagcttcagc agtcggtgga cggtttgccc ttccagtttg agcaaatggc
    19261 ggcggacggc ctccggctcg tcaaaaccgt tgattgcacg gtgcagcgcg cgcgccatat
    19321 gtgccgccgc tttgcccgtc ggtgcggcaa gcgcgatgtt gggaagattt tcgtcttcac
    19381 cgcaaatcag cgccagcagt ttggcaaccg ttgtcgtttt gcccgttccc ggcccgccgg
    19441 taatcaccat aaaagactgc aacagtgcca aggcggcggc atcgcgctgc ccttcgctgc
    19501 ccgtgccttg aaaccatttt gcgaggtttt gcctcgcgcc tgccgcgtcg ggggcggacg
    19561 tgtcggctgc cgccaagcgt tttatctcgg cagccaaatc gtattccaac tgccacatcc
    19621 tgcccaaaaa cagccttctg ccttccaaaa tcaaaggcgc ggcggatgtt ccgaccacgg
    19681 gtgcgagtgc cgacagcgcg tcagcctcgc caccgctcaa acggataaac gaatgaccgt
    19741 tttgcaatgc ctgaaacagg cgttcggtgc agtttgcaag cacttcgtcg ccggaacccg
    19801 catagtgttc caaaaaacgg attgccgccc ttgccgccgc ttgggcaaat tcatctgtct
    19861 gccgttccat tttattcctt atccaaatgc cgtctgaagg cgtggggctt cagacggcgc
    19921 ggtgttgttt cggctgttta ggcgtttgcg ccctgtttgg ggtgcaggct gccgtctttc
    19981 atgaccatca cgcgctcgaa gcggccggcg agttcgtcgt cgtgcgttac gaccaccagc
    20041 cccgttccca attctgtttt cagttccagc atcatatcca aaacattcct ggcgttcgca
    20101 cgatcgagat tgccggtcgg ttcgtcggca agcaggcatt tgggttgggt aaccaaggcg
    20161 cgtgcaatgg cggcacgctg ccgctcaccg cctgaaagtt cgcccgcgcg gtgcgtcgaa
    20221 cggtgtttca gtccgacctt ttccagcatc gccattgccg cctccgcagc ctcttcacgg
    20281 ctttttttgc cgatcagaag cggcatcatc acattttcca gtgccgaaaa ttcaggcaga
    20341 agatggtgga actggtacac gaaaccgaga tggcggttac gtaaatcgcc caaacgccgc
    20401 tggtttaagg tacgcaaatc ctcgcccatc agcagcaccc tgccttcaga cggcatatcc
    20461 agcccgccca gaatatgcag cagcgtcgat tttccgctgc ccgaagaacc gatgatgcca
    20521 gtgctttccc ccgcgcggat ttccaaatcc aagccgtgca gcacccgaac gtccaaaccg
    20581 ccgtcccgat agcgtttgcc cacgccttcg catttcaaaa tcaactcact cataacgcaa
    20641 agcctccgcc ggttgggttt ttgacgcgcg ccggctcggg tagagcgtgg caacgaaaga
    20701 cagtcccaag gaaatgcagg caatcagggc aacgtcgccc atatcgacat cgctgggcag
    20761 gtagtcgata aaataaacct gcgaattgat aaggtggaca ccgagcaggt tttcaaaaaa
    20821 cgccacgacc ctgccgacgt tccaacccaa aagcacgccg cagaccacac ccgccagcgt
    20881 gccgaaaaag cctgaaaacg cgccctgcac cataaaaatc ttcatcacgc cgccagggga
    20941 aagacccaaa gtccgcaaaa tcgcaatgtc cgcctgcttt tccgtaaccg ccatcaccaa
    21001 ggaagagaca aggttgaacg ccgccacggc gataatcagc gtcaggatga tgaacatcat
    21061 ccgtttttcc aactcgaccg cctcaaaata gctgcggttg ttgtacgtcc aatcgcgcac
    21121 ccaaaccgcg tccctttgcg cctccggaat cagtgttgcc gtcaaggcgg gggcgttttg
    21181 cgggtcggcg agtttcagcc gcagccccgc aacttcctta tccaagcggt acagtacgcg
    21241 cgcgtcttgg atatgcgtca tcgccaatga attgtcaacc tcgtaaacac ccgttttaac
    21301 cagaccgacc acggtaaact gtttcaacct cggtacgact ccggcagggg taacgttgcc
    21361 ctccggcgtg atgacggtaa ctttattgcc gacttccgcc cccaaagcct ccgccaagcc
    21421 gacaccgagg ataatgtcaa actcgcccgg aatcagatct tcaaatttgc ctgccggcat
    21481 tttgtcgccg tattccacca ctttgcgctc ttcagacggc aaaatgccgc gcatctgcac
    21541 gcccctgatt tcgcccgcgt ttgccagcag agcctgattg gaaacatagg gcgcggcagc
    21601 caaaatacct ttgcggtttt cggtaaaccg aagcaggttg cgccaatccg tatccgtatt
    21661 gtcgatatag ccgatttcgg cgtgcggcgc gacattcagg agctgcccgc gtatttcttt
    21721 ctgaaagccg ttcataaccg acaagacgac aatcagcgcg gttacgccca aggcgattcc
    21781 ggcaatcgaa accatcgtga taaacgacat aaagccgttg cgctttttcg ccctgagata
    21841 cctcaagcct atccaagcct ctagagaaaa cataacgcta ccttaaaaat gtctgcaaac
    21901 gtgccgcccc ggacggcggt ttgggggcgg cggcaaaagt ttattgtacc gtaaaacccc
    21961 ggcagcgtcc gaacgcccga gtgcggggga cggggcggca gagcgggcgg aaaacttgca
    22021 caacgcgtca aactgcccta tcctttcctt cagaaaaacc gtttcttgag gaaaacaatg
    22081 aatatccgaa ctgcttttgc tttgtgcgcc atcgccttat ccgccgctgc ggctgcctac
    22141 gccaaagaaa tcaaaatcga tgccaacaac acgccttatt ccgaagccga cgcgcaaaag
    22201 ctggcggcaa cggcagtcgg tatgggtgtt aaggaaccta tcagcctgaa cggcggcagc
    22261 ggcagcatta ccgtgtccgg cagcagcgcg acgcagtgcg tgttcaaagt cggcaacgga
    22321 ggcgcattgc agattcaagg gctaaactgc aagtaaaccg cccggaaaaa tgccgtctga
    22381 aggcttcaga cggcattttg cattggcggc gttatgcccc gccttcttta atcaggcggc
    22441 gttcgtacac cgcctgcgcc agcgttcccg catcgacata ttccaattcg ccgcccaagg
    22501 gaatgccctg cgacagcctg ctgactttgt aaggcaggtt tttaaaaaac tcggacagga
    22561 catacgccgt cgcattgcct tctgcggtaa aagcggttgc aataatgatt tcttcgactt
    22621 ccccgccgcc cagccgttgc gccagcctgt ccaatgcgat ggcggatacg tccattccca
    22681 atgccgtatt gatttgcccc atcaggacga aatacagccc gtcgtggcag tttgccgctt
    22741 ccatattcga cacgtcggca ggcatatgca ccaccatcag ccgccgcccg tcgcgtgttt
    22801 catcggcaca aatatcgcac aatccgcctt cgcaaaacgt gttgcacatc gcgcaatggt
    22861 aaacctgctt caatgccgtc tgcaaggcat ccaccagttt ttcagcctct ttgcgcttgt
    22921 gttggagcaa atgatacgct atccgctgtg ccgatttcgg cccgacgttg ggtaaaacct
    22981 tcagcgcgtc gatcaatcct tggaaggcat cttgtttttt gtggctcatc atattccgcc
    23041 gtatgggaaa acggccggaa tattccgacc gttattttgt caacaaaagt gtcaattact
    23101 gaccgtcgcc gttgtcgacc gattgcgctc ctttggtctg tttgattttg ccgttgaaat
    23161 aacgtatcaa caagtcgaaa gtattggcag actgctgttg cgccaaagcc tgttttgcaa
    23221 gcggaagctg tgcggcgata tcatccggcg gggttacagc ctgtacttcg acaatcacgg
    23281 gtgccggcag accgatcagc ctgacgtagg cgggtttgcc gtttgccggt tttgctttca
    23341 gcagttccgc ataagcctcg ggcggcatgg actgccttgc ctgctgcgcg cccaaaacgg
    23401 acacttccga ccatttcacg tcaacagcct tgccgccgtt cagttgggta agcacgtctt
    23461 ttgccttgtt ttcggcaagt ttggcggctt cggtacggat ataagcctga cgtaccgcgt
    23521 ctttggcttc ggcaaacggc agggttttct cttcgcggac ttctttggcg cggacgaccc
    23581 acgcggtttc gctgttgatg gtcagcactt cggaattgtg ttttttcttc aatacgtcgt
    23641 cgctgaatac ggcattgatc aggttttcgg gcataccgga catttgcgca tcctgcctgc
    23701 tcagccaagt ttcttgggtt tcgactttca aaccgctgtt tttggcggct tcggcaagcg
    23761 aggaaggatg gttgaacgcg tcatcgccca gcttttcttt tgccttattg aagtcggcaa
    23821 ccgccttttt cattttcaat tcgttttcga cggcggcttt ttcctgctcg aaagaaggtt
    23881 tggcttcatt tgccggcaaa cgcgccacgc gctcttcaaa cgcatttttc acttctgttt
    23941 cgctgacggt ctgtttgtct gcaaagtctt tcagattcaa ggcgacatat tccaatttga
    24001 ccgctttggg aagcaggtag tcttttttgt ttgcgttata aaacttctgc aaatcggctt
    24061 cagacacttt gacttgggcg atgaattcgt cggggttgaa agtgtgcgaa cggatggtgc
    24121 ggttgacctg cgtcagcctg atcagctgtt ccgcctgcgc gtcgccgacc aatacgctgt
    24181 tttggacgag gtttaccaaa ttctgcaagg caaactgatc gcggatttct tcgacaaact
    24241 ggtcttcaga catatggcgt tgggaaaggt agcggtttaa aagcgcgtgg tcgaatttgc
    24301 cgtttgcgtc gtggaaattg ggatcgtcca cgataatctg cttgatttgt tcggaagaaa
    24361 ccgaaatgcc catcagcttc gcgccctgtt tcaggtaggc gcgttgcagc agggattgga
    24421 acaccgcgtc gcgcgaaggg ccgccgccgt ccgcctgttc gttctgtatg gcgttgttga
    24481 tggagtggtc gctgattttt tcgtcgccca cttggacgat gtagtcggca cccggatggg
    24541 ataccgtgct gaccccgaag ccgacgaagg ttaatgcaat caggcccaaa aggacttggg
    24601 cgggcgttct gtatttttcg atggaatgga acatattttc agattggaaa tgggattggg
    24661 aaattcaagt cgggtattgt aacggttttt atccctgtct gcacagggct tgccgattga
    24721 agatgccgtc gtaggtttct tcgctgaagc cgacataaac cctgccgccg cactccaata
    24781 cgggacgctt gatcaggctc ggcatttcgg acatcagttt gacggcctcc gccgtcgagg
    24841 acagcacttt ttgctgtgtt ccggcatcaa gtttgcgcca gctcgtcccg cgtttgttga
    24901 gcagggttgc caaaggcact tgttccagcc acgagcagat ttccgcttca gacggcatct
    24961 gttttttgaa atcccgaaat tcaaactcca agccgtatcc ggcaagcctg tttttggctt
    25021 ttttgactgt gtcgcaattt ggaatgccgt gaaggataat catgggaacc cttttgtctg
    25081 aaacgataaa tgcggcattt tactataaga gtgcaggtct gtttcagacg gtatgtcgat
    25141 tatgttacaa tccgaaaatt cgaaaaattt aatctcttgt tcaataaagg ttttaccaat
    25201 aatgatttct accaacggca ttaccatgca gttcggcgcg aagccgctgt ttgaaaacgt
    25261 atccgtaaaa ttcgaagaag gcaaccgtta cggcttgatc ggcgccaacg gctcaggcaa
    25321 atccaccttc atgaaaatcc tcggcggcga tttggaacag accgccggtg aagtcgcaat
    25381 tgaaaacggc gtgcgtttgg gtaaattgcg tcaagaccaa tttgcctacg aagacatgcg
    25441 cgtgctggac gtggtgatga tgggtcacac cgaaatgtgg gcggcgatga ccgagcgtga
    25501 tgcgatttac gccaatcccg aagccaccga agacgactac atgaaagccg ccgaactgga
    25561 agccaagttc gccgaatacg acggctacac cgccgaagcg cgcgctgccg aactgttgag
    25621 cggcgtgggc atttccgaag atttgcacaa tgcgaccatg gcagaagtcg ccccgggctt
    25681 caaactgcgc gtattgctgg cgcaagccct gttctccaaa ccagacgtat tgcttttgga
    25741 cgaaccgacc aataacttgg acattaatac catccgctgg ctggaaggtg tgttgaacca
    25801 atacgactcc acgatgatta tcatctcgca cgaccgccac ttcttgaacg aagtctgcac
    25861 ccacatggcg gatttggact acaacaccat caccatctat ccgggcaact acgacgacta
    25921 catgctcgcc tccgcccaat cgcgcgaacg cgccctgaaa gacaatgcca aagccaaaga
    25981 gaaactgcaa gagctgcaag agttcgtcgc ccgcttctct gccaacaaat ccaaagcccg
    26041 tcaggcaacc agccgtctga aacaggccga caaaatcaaa tcggagatgg tcgaagtcaa
    26101 accttccacc cgtcaaaacc cgtatatccg ttttgaagcc gatgaaaaag ccaagctgca
    26161 ccgtcaggct gtggaagttg aaaaactggc gaaacgcttt gaaacccagt tgtttaaaaa
    26221 cctgaacttc atccttgaag cgggacaacg cctcgccatc atcggcccga acggcgcggg
    26281 caaatccacc ctgctgaaac tcttggccgg cgcgtacaac cccgaatatt cagacggtct
    26341 gctgccggac gaaggcagca tcaaatgggc ggaaaaagcc agcgtcggct actatccgca
    26401 agatcacgaa aacgacttcg atgtcgatat ggatttgagc gaatggatgc gccaatgggg
    26461 gcaggacggc gacgacgaac aagtcatccg cggcactttg gggcgtttgc tcttcggcag
    26521 taacgatgtc gtgaaaaaag tgaaggttct ctccggtggt gaaaaaggcc gtatgcttta
    26581 cggcaaactg ttgctgttga aacccaatgt cttagtcatg gatgaaccga ccaaccacat
    26641 ggacatggaa agcatcgaat ccttgaacat ggcgctggaa aaatacaacg gcacgctgat
    26701 tttcgtctcc cacgaccgtc agttcgtttc ttccctggct acccaaatca ttgaattgga
    26761 cggcaaaggc ggatatgaac actacttggg cgattacgaa agctatctcg agaaaaaagg
    26821 cgtagcataa ccgccggttg gaacaatgcc gtctgaagcg gcttcagacg gcattgttga
    26881 taactttaaa ataggaagca tatgcagact tatctcgtcg gcggtgccgt ccgcgattat
    26941 cttttgggct tgcccgtcaa agaccgcgat tgggtggtcg tcggcgcaga cgcacaaacc
    27001 atgctggcgc aaggcttcca gccagtcggc aaagactttc ccgtgtttct ccatcccgaa
    27061 acacacgaag aatacgccct cgcccgcacc gagcgcaaaa ccgccaaagg ttacgtcggt
    27121 ttcagtttcc acgccgacaa agacgttacg ctggagcagg atttgatgcg ccgcgacctg
    27181 accatcaacg cgatggcgca agatgcggac ggcaagatta tcgacccttt cggcggacaa
    27241 cgggatttgg cggcaggcat tttgcgccac gtttccccag cctttgccga agaccccgtc
    27301 cgcatcctgc gtactgcccg ctttgccgcg cgttacaagt ttgaaatcgc cgaagaaacc
    27361 ataaagctga tgcggcagat ggtggaaaac ggcgaagcgg acgcattggt tgccgaacgc
    27421 gtctggcagg agtttgcgaa aggtttgatg gaaaaaaatc cgcgcaaaat gattgaagtg
    27481 ttgcgcgaat gcggcgcgct caaagtcttg ctgcccgaag tcaatgccct cttcggcgtg
    27541 ccgcaacgcg ccgactacca tcccgaaatc gacagcggca tccataccct gatgacgctg
    27601 caacgcgccg ccgatatggg tttgagcctg cccgaacgct atgccgccct gctgcacgac
    27661 ttgggcaaag ccaaaacacc gtccgacatc ctgccgcgcc accacggaca cgacctcgcc
    27721 ggtgtcgaac ccgtgcgcga agtcaatcag cggctgcgtg cgccgaaaca ttgcgccgag
    27781 cttgccgaac ttgtctgccg ttggcacatt attttccacc aagtcggaca gcttaaaagc
    27841 caaaccattc tgaacgtttt gaaaaaaacc gacgctttca gacgccccga acgctttcag
    27901 acggcattga acgtctgcat tgccgacacg caaggccgtc tgaaccgcga acacacgccc
    27961 tacccgcaac gcgcgcactg gctcgcctta ctcgaagccg ccaatcaggc ggattcgggc
    28021 aaaatcgccg ccgaatgccg ctcgcaggga aaagcgcacc ttatcgccga acaaatcgac
    28081 cgggcgcggc tggcacaaat cgccccattg caaaaagcgt ttcgagcggc gcaagacaaa
    28141 acagaaaaac attaaaacgt ccaatgcagc ca
//
LOCUS       DAWGNT010000005        27743 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.005, whole genome shotgun sequence.
ACCESSION   DAWGNT010000005 DAWGNT010000000
VERSION     DAWGNT010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 27743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27743
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.005"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            182..538
                     /locus_tag="WHR98_000131"
     CDS             182..538
                     /locus_tag="WHR98_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEZ2306874.1"
                     /translation="MLSAYFPVFVFILVGLAAGVLFILLGTILGPKRHYAEKDAPYEC
                     GFEAFENARMKFDVRYYLVAILFILFDLEVAFMLPWAVVFKDLGAYGFWSMLVFIVVL
                     TVGFVYEWKKGALEWE"
     gene            529..1011
                     /locus_tag="WHR98_000132"
     CDS             529..1011
                     /locus_tag="WHR98_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEZ2306875.1"
                     /translation="MGIEGVLKKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMH
                     AGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSC
                     ANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTIARDE
                     "
     gene            1024..1617
                     /locus_tag="WHR98_000133"
     CDS             1024..1617
                     /locus_tag="WHR98_000133"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEZ2306876.1"
                     /translation="MASIQNLYETVVGVLGDQASKVISALGEITVECLPEHYVSVMTT
                     LRDHEELHFELLVDLCGVDYSTYKNEVWQGKRFAVVSQLLSVQNNQRIRVRVWVSDDD
                     FPVVESVVDIYNSADWYEREAFDMYGIMFNNHPDLRRILTDYGFVGHPFRKDFPISGY
                     VEMRYDEEQKRVIYQPVTIEPREITPRIVREENYGGQ"
     gene            1607..2863
                     /gene="nuoD"
                     /locus_tag="WHR98_000134"
     CDS             1607..2863
                     /gene="nuoD"
                     /locus_tag="WHR98_000134"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEZ2306877.1"
                     /translation="MANKLRNYTINFGPQHPAAHGVLRMILELEGETIVRADPHIGLL
                     HRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMF
                     AEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV
                     YRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETLLTDN
                     RIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVGVN
                     GDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI
                     HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDE
                     MAKGHMLADVVAIIGTQDIVFGEVDR"
     gene            2863..3336
                     /gene="nuoE"
                     /locus_tag="WHR98_000135"
     CDS             2863..3336
                     /gene="nuoE"
                     /locus_tag="WHR98_000135"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HEZ2306878.1"
                     /translation="MLSAESLKQIDTELAKYPADQRRSAIMGALRIAQTEKGWLAPET
                     IAFVADYIGITPAQAYEVATFYNMYDLEPVGKYKLTVCTNLPCALRGGMATGEYLKQK
                     LGIGYGETTPDGKFTLVEGECMGACGDAPVMLVNNHSMCSFMTEEAIEKKLAELE"
     gene            3726..5027
                     /gene="nuoF"
                     /locus_tag="WHR98_000136"
     CDS             3726..5027
                     /gene="nuoF"
                     /locus_tag="WHR98_000136"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HEZ2306879.1"
                     /translation="MAIYQSGVIFDQVDTANPDCWTLDEYVKRGGYTALRKILSENIS
                     QTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGEKYVVCNTDEGEPGTFKDRDII
                     MFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNILGS
                     DFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTET
                     FSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVLKMAGG
                     MRGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVK
                     ALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMEDLDLLDSVGNQMAGRT
                     ICALADAAVFPVRSFTKHFRDEFVHYIEHGGPMKEHKWGGW"
     gene            5027..5464
                     /locus_tag="WHR98_000137"
     CDS             5027..5464
                     /locus_tag="WHR98_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306880.1"
                     /translation="MVEAKIFILYGAANKGKSTTLNTLFNQICRKFSKFLVFFERHGN
                     GLDFVAVFDHEGQRIGFYSSGDNEYEVRRNLYKLYSHNCDFIFGTSRTRGGSCDAVGC
                     YAELLHGDVNIINWCEKFEPTDEDNERAVKELFKSFKNIINKL"
     gene            5752..8013
                     /locus_tag="WHR98_000138"
     CDS             5752..8013
                     /locus_tag="WHR98_000138"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEZ2306881.1"
                     /translation="MLQIEIDGKQVSVEQGATVIEAAHKLGTYIPHFCYHKKLSIAAN
                     CRMCLVNVEKAPKPLPACATPVTDGMIVRTHSAKAREAQEGVMEFLLINHPLDCPTCD
                     QGGECQLQDLAVGYGKTTSRYTEEKRSVVGKDMGPLVSAEEMSRCIHCTRCVRFTEEI
                     AGLQEIAMVNRGEHSEIMPFIGKTVETELSGNVIDLCPVGALTSKPFRFNARTWELNR
                     RKSVSAHDALGSNLIIQTKDHTVRRVLPLENEAINECWLSDRDRFAYEGLYHESRLKN
                     PKIKQGGEWMDVDWKTALEYVRSAIECIAKDGNQNQVGIWANPMNTVEELYLAKKLAN
                     GLGVKNFATRLRQQDKRLSDDLKGAQWLGQSIESLADNDAVLVVGANLRKEQPLLTAR
                     LRRAAKDRMALSVLASSKEELFMPLLSQEAVHPDEWAGRLKNLSADAEHAVTASLKNA
                     EKAAVILGAEVQNHPDYAAIYAAVQELADATGAVLGILPQAANSVGADVLGVNSGESV
                     AEMANAPKQAVLLLNVEPEIDTVDGAKAVAALKQAKSVMAFTPFVSETLLDVCDVLLP
                     IAPFTETSGSFINMEGRLQSFHGVVQGFGDSRPMWKVLRVLGNLFDLKGFEYHDTVAI
                     LKDALDAESLPSKLNNRAASTQKDFQTASSRLVRVGGVGIYHTDAIVRRSAPLQETSH
                     AAVPAARVNPNTLARLGLQDGQTAVAKQNGASVSVAVKADAGLPENVVHLPLHTENAA
                     LGALMDTIELAGA"
     gene            8016..9092
                     /gene="nuoH"
                     /locus_tag="WHR98_000139"
     CDS             8016..9092
                     /gene="nuoH"
                     /locus_tag="WHR98_000139"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEZ2306882.1"
                     /translation="MQEWFQNLFAATLGLGDLGITVGLVVSVIVKIVIILIPLILTVA
                     YLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFKEVTRPRLSNKALFYIGPI
                     MSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGVIIAGWASNSKYSFLGA
                     MRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGGSVFSWNWLPLFPIF
                     IVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEYIFMILIAALTSL
                     MFLGGWLSPFPQSWGFIGTPSAFWMFVKMAAVLYWYLWIRATFPRYRYDQIMRLGWKV
                     LIPIGFAYIVVLGVWMISPLNLWK"
     gene            9173..9652
                     /gene="nuoI"
                     /locus_tag="WHR98_000140"
     CDS             9173..9652
                     /gene="nuoI"
                     /locus_tag="WHR98_000140"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEZ2306883.1"
                     /translation="MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRF
                     RGLHAQRRYPNGEERCIACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFC
                     GFCEEACPTDAIVETHIFEYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR"
     gene            9683..10390
                     /locus_tag="WHR98_000141"
     CDS             9683..10390
                     /locus_tag="WHR98_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306884.1"
                     /translation="MEGLINALKYLAEHEPIDNFEEIRTRNSPIELPSGLSNFEQNIF
                     LKENLSPKLQNDDSLKTHYWIIREWGGIKSFKQSAENSQLIRQFLSELNSGKLSSGLL
                     KISSLSKLASFIDCERFAIYDSRAIFSLNWLLFKFTNADLFFQPQGRNRELEIRNMNV
                     LFHFSDIKPNYRKPDVSFHQYCGLLQDLAKQVYGKQAKPYHIEMLLFKIATTWICADM
                     DQLIKFDCLRNQDFQTA"
     gene            10426..11097
                     /locus_tag="WHR98_000142"
     CDS             10426..11097
                     /locus_tag="WHR98_000142"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEZ2306885.1"
                     /translation="MTFQLILFYIFAVIILYGAIKTVTAKNPVHAALHLVLTFCVSAM
                     IWMLMQAEFLGVTLVVVYVGAVMVLFLFVVMMLNIDIEEMRAGFWRHAPVAGVVGTLL
                     AVALILILVNPKTDLAAFGLMKDIPADYNNIRDLGSRIYTDYLLPFELAAVLLLLGMV
                     AAIALVHRKTVNPKRMDPADQVKVRADQGRMRLVKMEAVKPQTESAEESEVSDDLKPK
                     EEGKA"
     gene            11094..11399
                     /gene="nuoK"
                     /locus_tag="WHR98_000143"
     CDS             11094..11399
                     /gene="nuoK"
                     /locus_tag="WHR98_000143"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEZ2306886.1"
                     /translation="MITLTHYLVLGALLFGISAMGIFMNRKNVLVLLMSIELMLLAVN
                     FNFIAFSQHLGDTAGQIFVFFVLTVAAAESAIGLAIMVLVYRNRQTINVADLDELKG"
     gene            11433..12008
                     /locus_tag="WHR98_000144"
     CDS             11433..12008
                     /locus_tag="WHR98_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine monophosphate-protein transferase
                     NmFic"
                     /protein_id="HEZ2306887.1"
                     /translation="MPSENPIGKTMKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQ
                     IHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVE
                     MNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFL
                     LKDNLTDDVDNREIIFKGIEQSYYYEGYEKG"
     gene            12132..12473
                     /locus_tag="WHR98_000145"
     CDS             12132..12473
                     /locus_tag="WHR98_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306888.1"
                     /translation="MMDKNQLEQEFHKAMLNIYQEALNLPQPYKATRFLQIVNEFGGK
                     EAADKLLSTGEKKTQTGFTELILSGGGVHALKYSMEYLVLQKPWCDLFTEEQLAVARK
                     RLERVGFVFPK"
     gene            12522..14546
                     /gene="nuoL"
                     /locus_tag="WHR98_000146"
     CDS             12522..14546
                     /gene="nuoL"
                     /locus_tag="WHR98_000146"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEZ2306889.1"
                     /translation="MNDMTLYLIIALVPLAGSLIAGLFGNKIGRAGAHTVTILGVAVS
                     AVLSAYVLWGFIDGSRAKFDENVYTWLTMGGLDFSVGFLVDTMTAMMMVVVTGVSLMV
                     HIYTIGYMHDEKVGYQRFFSYISLFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGF
                     YFKRPSATFANLKAFLINRVGDFGFLLGIGLVLAYFGGSLRYQDVFAYLPNVQTATIQ
                     LFPSVEWSLITVTCLLLFVGAMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGL
                     FMVSRMSPIYEMSSTALSVIMVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTV
                     ALGASAYSVAMFHVMTHAFFKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPITWLTM
                     LIGNLSLIGTPFFSGFYSKDSIIEAAKYSTLPGSGFAYFAVLASVFVTAFYAFRQYFM
                     VFHGEEKWRSLPEHHSDGHGEEHHGLGKNDNPHESPLFVTLPLILLAIPSVIIGYVAI
                     GPMLYGDFFKDVIFVNTDAHPTMHIMKEEFHGALAMVSHSLHSPVLYLAIAGVLSAWL
                     LYVKLPHLPAKIAQAFRPVYVLFENKYYLDALYFNVFAKGTRALGTFFWKVGDTAIID
                     NGIVNGSAKLVGAIAAQVRKAQTGFIYTYAAAMVFGVLVLLGMTFWGLFR"
     gene            14635..16131
                     /locus_tag="WHR98_000147"
     CDS             14635..16131
                     /locus_tag="WHR98_000147"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEZ2306890.1"
                     /translation="MFSNYLLSLAIWIPIAAGVLVLATGSDSRAPLARVLAFMGALAG
                     FLVTLPLFTGFDRLSGGYQFTEFHEWIPLLKINYALGVDGISVLFIILNAFITLLVVL
                     AGWEVIQKRPAQYMAAFLMMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPR
                     RVYASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSIVDFQNIKQIPLGVQQLLFVAFFL
                     SFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGFLRFILPIMPDAARYFA
                     PVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKG
                     AIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGL
                     PATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGASYTLWMYKRVIFGAIHNPHVAEM
                     KDINCREFAILAVLAVAVLGMGLYPNAFIEVVHQAANDLIAHVAQSKI"
     gene            16141..17586
                     /gene="nuoN"
                     /locus_tag="WHR98_000148"
     CDS             16141..17586
                     /gene="nuoN"
                     /locus_tag="WHR98_000148"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HEZ2306891.1"
                     /translation="MNWSDLNLMPALPEVALLSLLVLLLLADLWVSDDKRRWTHYGAL
                     ATVAVTAAVQLAVWEQGSTSSFNGMYIADGMSRLAKMVLYALTFALFVYAKPYNQVRG
                     IFKGEFYTLSLFALLGMSVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAAL
                     KYFVLGALASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVA
                     FKLGAVPFHMWVPDVYHGAPTSVTALVGTAPKVAAVVFAFRILVTGLGTVHHDWSLMF
                     ALLAAASLLVGNLAAIMQTNIKRMLAYSTVSHMGFILLAFMAGAVGFAAGLYYAITYA
                     LMAAAGFGVLMVLSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYA
                     KFGVIMALLKQGYVWLSVFAVVMSLIGAFYYLRVVKVMYFDESGRARPTVGGNNAAKF
                     LLSVNALLLVLWGIMPQTVIDWCAKALENTL"
     gene            17698..17997
                     /locus_tag="WHR98_000149"
     CDS             17698..17997
                     /locus_tag="WHR98_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2818 family protein"
                     /protein_id="HEZ2306892.1"
                     /translation="MTASMYILLLLALIFANAPFLTTRLFGIVPLKRKHFGHHLIELA
                     AGFALTAVLAYILESRAGAVHDQGWEFYATVVCLYLIFAFPCFVWRYFWHTRNRE"
     gene            complement(18106..19002)
                     /locus_tag="WHR98_000150"
     CDS             complement(18106..19002)
                     /locus_tag="WHR98_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEZ2306893.1"
                     /translation="MNPTNDLKAWQQRAQAQTELLLERFLPSENEIPHTLHEAMRYAA
                     LDGGKRLRPMLVLAASELGEAVHEAVEQAMAAIEMIHVYSLVHDDMPAMDNDSLRRGK
                     PTCHIQYDEATALLVGDALQTQAFDVLSRPTELPAARQLAMLSVLAKAGGSAGMAGGQ
                     AIDLANVGKQMVQADLEQMHSLKTGALIRAAVLLGAMSCPNLSEDSLAVLDDYAAKLG
                     LAFQVIDDVLDCEADTATLGKTAGKDADNDKPTYVKLMGLEAARSYAHKLVAEAVALL
                     EPFGDKALRLRQLAEFAVARKY"
     gene            complement(18986..19210)
                     /locus_tag="WHR98_000151"
     CDS             complement(18986..19210)
                     /locus_tag="WHR98_000151"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEZ2306894.1"
                     /translation="MKKNAPKSFEEALSRLESLTQSMQGEMPLEDALAAYQEGNELVR
                     YCQTKLAQVEQKLQVLDADGLKELNLESDE"
     gene            complement(19271..19447)
                     /locus_tag="WHR98_000152"
     CDS             complement(19271..19447)
                     /locus_tag="WHR98_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009346047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII"
                     /protein_id="HEZ2306895.1"
                     /translation="MPSETGFGFQTASVFQKCYNPLFTGTSETMFQHAGRHLKHRPMC
                     RPDLEGLTPLPNKV"
     gene            complement(19474..20397)
                     /gene="rsgA"
                     /locus_tag="WHR98_000153"
     CDS             complement(19474..20397)
                     /gene="rsgA"
                     /locus_tag="WHR98_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEZ2306896.1"
                     /translation="MPSEHPFSDGISTPNPKETMNDTAQITASYGRRYIVRTPDGTTY
                     EASTRKKRVDFACGDRVRISPVNAEQVVIEDFLPRQSLLYRQDAWKTKLIAANVTQLL
                     IVTAAVPSPSVRLLQRALLAAEAAGIRAVIVLNKADLPETALWREKLKFYETLGYPVI
                     ETRALENAGSLRPALQGHSNILLGQSGMGKSTLTNALLGSQTARTGDISAALDSGKHT
                     TTHARLYDLNGETQLIDSPGLQEFGLHHLQAADLPRYFPDFRHLVGQCRFHNCTHRAE
                     PGCAFKAAAETRAASPERLAFLQGITDELPG"
     gene            complement(20402..22258)
                     /locus_tag="WHR98_000154"
     CDS             complement(20402..22258)
                     /locus_tag="WHR98_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEZ2306897.1"
                     /translation="MLNKIFSWFESRIDPYPEAAPKTPEKGLWRFVWSSMTGVRKWIA
                     ALAALTAGIGIMEALVFQFMGKIVEWLGKYAPTELFAEKGWELAAMAAMMVFSVAWAF
                     AASNVRLQTLQGVFPMRLRWNFHRLMLNQSLGFYQDEFAGRVSAKVMQTALALRDAVM
                     TVADMVVYVSVYFITSGVILASLDSWLLLPFIGWIVGFASVMRLLIPKLGQTAAWQAD
                     ARSLMTGRITDAYSNIATVKLFSHGAREAAYAKQSMEEFMVTVRAQMRLATLLHSCSF
                     IVNTSLTLSTAALGIWLWHNGQVGVGAVATATAMALRVNGLSQYIMWESARLFENIGT
                     VGDGMATLSKPHTILDKPNALPLKVPQGAIKFEHVDFSYEAGKPLLNGFNLTIRPGEK
                     VGLIGRSGAGKSTIVNLLLRFYEPQSGTVSIDGQDISGITQESLRAQIGLVTQDTSLL
                     HRSVRDNIIYGRPDATDAEMVSAAERAEAAGFIPELSDAKGRRGYDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQESLDKMMDGKTVIAIAHRLST
                     IAAMDRLVVLDKGRIIEEGTHAELLEKRGLYAKLWAHQSGGFLNEHVEWQHD"
     gene            complement(22284..22421)
                     /locus_tag="WHR98_000155"
     CDS             complement(22284..22421)
                     /locus_tag="WHR98_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306898.1"
                     /translation="MPSEGGAAFALTKPCVSAPRCLPDGFSRKMALLSFLSDGIVFDA
                     V"
     gene            complement(22421..23005)
                     /gene="ruvA"
                     /locus_tag="WHR98_000156"
     CDS             complement(22421..23005)
                     /gene="ruvA"
                     /locus_tag="WHR98_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEZ2306899.1"
                     /translation="MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGES
                     VQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVSGIGAKTALGILSAMTADELAQAV
                     AEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAAAPAADETEDIVSTLLA
                     LGYSEREAKAAVKGVPEGTDVGEGVRLALKNLLK"
     gene            complement(23087..23413)
                     /locus_tag="WHR98_000157"
     CDS             complement(23087..23413)
                     /locus_tag="WHR98_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEZ2306900.1"
                     /translation="MNFKRLLLTAAATALMGISAPALAHHDGHGDDDHGHAAHQHNKQ
                     DKIISRAQAEKAALARVGGKITDIDLEHDNGRPHYDVEIVKNGQEYKVVVDARTGRVI
                     SSRRDD"
     gene            complement(23467..24186)
                     /locus_tag="WHR98_000158"
     CDS             complement(23467..24186)
                     /locus_tag="WHR98_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEZ2306901.1"
                     /translation="MTLTRKTLFLLTAAFGTHSLQTASADAVVKAEKLHASANRSYKV
                     AGKRYTPKNQVAEFTQTGNASWYGGRFHGRKTSGGERYDMNAFTAAHKTLPIPSYVRV
                     TNTKNGKSVIVRVNDRGPFHGNRIIDVSKAAAQKLGFVSQGTAHVKIEQIVPGKSAPV
                     AENKDIFIDLKSFGTEHEAQAYLNQAAQNFAASTSSPNLAIEKRRYEYVVKMGPFASQ
                     ERAAEAEAQARGMIQTVLTAG"
     gene            complement(24183..24305)
                     /locus_tag="WHR98_000159"
     CDS             complement(24183..24305)
                     /locus_tag="WHR98_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HEZ2306902.1"
                     /translation="MPSENLSGHIPNRRPHCTAVRNVSGGHDAHSSSTQERNTF"
     gene            complement(24316..24780)
                     /gene="trmL"
                     /locus_tag="WHR98_000160"
     CDS             complement(24316..24780)
                     /gene="trmL"
                     /locus_tag="WHR98_000160"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HEZ2306903.1"
                     /translation="MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKM
                     KRAGLDYHEFASLAVYENFDDCLKALAGRRIFALTTKGTARPDETAFQKGDVLLFGPE
                     TRGLPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGGV"
     gene            complement(24845..25342)
                     /locus_tag="WHR98_000161"
     CDS             complement(24845..25342)
                     /locus_tag="WHR98_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEZ2306904.1"
                     /translation="MWASLHYEPPVSNMIHALKHLADLSMVQPLADLMMQNPPDRLAD
                     ECFDFVLPVPLSRERLLQRGFNQSESIVGLLAQRYGWQILPRHTVFRHHRPPQSTLKG
                     GERRRNIKNAFEIRTPIPENCNILLIDDVFTTGATLDELAKTLKKLGANRICCWTLAR
                     TPMKK"
     gene            25398..26312
                     /gene="bioH"
                     /locus_tag="WHR98_000162"
     CDS             25398..26312
                     /gene="bioH"
                     /locus_tag="WHR98_000162"
                     /EC_number="3.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HEZ2306905.1"
                     /translation="MCLKHRGQLFAASVRYAAKSSRQPAQMPSETPDEPWHNTQRLIV
                     GASAMRRQRERKSMPDAVKKVYLIHGWGANRHMFDDLMPRLPATWPVSAVDLPGHGDA
                     PFAQPFDIEAAADAVAAQIDTPADILGWSLGGLVALYLAARHPDKVRSLCLTASFARL
                     TAAEDYPEGLAAPALGKMVGAFRTDYAKHIKQFLQLQLLHTHDADRIIGRILPDLARC
                     GTPSALQEALDAAERADARHLLDKIDVPVLLVFGGKDAITPPRMGEYLHRHLKGSRLV
                     VMEKAAHAPFLSHAEAFAALYRDFVEGV"
     gene            26314..27102
                     /locus_tag="WHR98_000163"
     CDS             26314..27102
                     /locus_tag="WHR98_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEZ2306906.1"
                     /translation="MNPQDKCWQVHRHLAEHADQRLTLVRNAPKHILLAGADADISRS
                     LLAKRYPQAVFEEYDSRADFLAAAAAVRKGGFWQRFTGKGVVQHCQSPTAPLPEACAD
                     MLWSNLGLLAAEQILPVLHNWARALETDGLLFFTCFGRDTLAELKCRLKENGIESRSA
                     LFPDMHDLGDMLAENGFYDPVTDTAKLVLDYKKAETFWADMDTLGVWRAMSWNDENAA
                     RSCVGTIFEREGGLSITLETVYGHAVKKLMLPQGENVVQFFPKR"
     gene            27379..>27743
                     /locus_tag="WHR98_000164"
     CDS             27379..>27743
                     /locus_tag="WHR98_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306907.1"
                     /translation="MYWERGLHMYKASAVVPTGYVRVGNTAPLVGEDTQRYASFWGDG
                     YDVYRQLRWQQIPEKQRKAFKKAAKSKKTVMFAGREYGISKQNLSDVWDDFEDAMELK
                     AFPCLSSLFLTKWHKNLYD"
BASE COUNT         6115 a         6935 c         7738 g         6955 t
ORIGIN      
        1 cgaattacgg tgtaaaaatt tatatgacct tataaaatca aataagaatc gttatcataa
       61 catgattgta tttattgggt ttttttgggc gttttgccga tatttacctt ttaatggttt
      121 ttgaaattcg ctaaaatacg aaattattgt agaaattttg ttaacggatt tgggtgtaac
      181 catgttgtcc gcttactttc ccgtctttgt ctttatcctc gtcggcctcg cggccggcgt
      241 gctgtttatc ctgctcggca cgattttagg cccgaaacgc cactacgccg aaaaagacgc
      301 gccttacgaa tgcggttttg aagcctttga aaacgcaagg atgaagttcg acgtgcgcta
      361 ttacctcgtc gccatcctct tcatcctgtt tgatttggag gtcgcgttca tgttgccgtg
      421 ggcagttgtg ttcaaagatt tgggcgcgta cggcttctgg tctatgctgg tgtttatcgt
      481 cgtcctgacg gtaggctttg tttacgaatg gaaaaaaggt gcgctggaat gggaatagaa
      541 ggcgttttga aaaaaggttt catcaccacc agcgcggata cggtgctgaa ctatatgcgt
      601 accggttcat tgtggccggt tactttcggc ttggcctgct gcgccgtgga aatgatgcat
      661 gcaggtatgg cgcgttatga ccttgaccgt ttcggcatca ttttccgtcc gtccccacgt
      721 caggccgacc tgatgattgt ggcaggtacg ctgaccaaca aaatggcgcc cgccctgcgc
      781 cgcgtgtacg accagcttgc cgagccgcgc tgggtgttgt ctatgggttc gtgtgcaaac
      841 ggcggcggct attatcacta ttcttattcc gtcgtgcgcg gtgccgatcg cgtcgtgccg
      901 gtagacgttt atgtgccggg ttgtccgccg actgcggaag ccctgattta cggcctgatt
      961 cagctccaac aaaaaatcaa gcgcacttcc accatcgcgc gtgacgagta aggagaggac
     1021 gatatggcaa gcattcaaaa cttatacgag accgtcgtcg gcgtgcttgg cgatcaggca
     1081 agcaaagtca tttcagcttt gggcgagatt accgtcgagt gtctgcctga acactatgtt
     1141 tcagtgatga ctacgctgcg cgaccatgaa gaactgcatt tcgagcttct ggtcgatttg
     1201 tgcggtgtcg attacagcac ttacaaaaac gaagtatggc agggcaaacg ctttgccgtc
     1261 gtcagtcagc tgctttctgt tcaaaacaat caacgcatcc gcgtacgcgt ctgggtttca
     1321 gacgacgact tccccgtagt cgaatccgta gtcgatattt acaacagcgc ggattggtac
     1381 gaacgcgaag ccttcgatat gtacggcatt atgttcaaca accacccgga cttgcgccgc
     1441 atcctgaccg attacggctt tgtcggacat ccgttccgca aagacttccc gatttccggc
     1501 tatgtggaaa tgcgttacga cgaagagcaa aaacgcgtga tttaccaacc tgttaccatt
     1561 gagccgcgcg aaatcacgcc gcgtatcgtc cgtgaggaga actacggtgg ccaataaatt
     1621 aagaaactac accatcaact tcggcccgca acaccctgcg gcgcacggcg tattgcgtat
     1681 gattttggag ttggagggcg aaaccatcgt ccgtgccgac ccgcatatcg gccttctgca
     1741 ccgaggcacc gaaaaactgg ctgaaaccaa aacctatctg caagccctgc cctatatgga
     1801 ccgtttggac tacgtttcca tgatggtcaa cgagcaggcg tattgcttgg cggtagaaaa
     1861 acttgccgga attgatgtac ctatccgcgc ccaatatatc cgcgtgatgt tcgccgaagt
     1921 aacgcgcatc ctcaatcact tgatgggcat cggttcgcac gccttcgaca tcggcgcgat
     1981 gaccgccatc ctctacgcct tccgcgatcg cgaagagctg atggacttgt acgaagccgt
     2041 gtccggcgcg cgtatgcacg cagcctattt ccgtcccggc ggcgtttacc gcgacctgcc
     2101 cgacttcatg cccaaatacg agggcagcaa attccgcaat gccaaagtat tgaagcagct
     2161 caacgaatcc cgcgaaggca ccatgctcga ctttatcgat gccttctgcg aacgcttccc
     2221 caaaaatatc gacacactcg aaaccctcct gaccgacaac cgtatttgga aacagcgtac
     2281 cgtcggcatc ggcgtcgtct cccccgaacg tgccatgcaa aaaggcttta ccggcgtgat
     2341 gttgcgcggt tcgggcgtgg aatgggacgt gcgtaagaca cagccttacg aagtgtacga
     2401 caaaatggat ttcgacatcc ctgtcggcgt gaacggcgac tgctacgacc gctacctctg
     2461 ccgtatggaa gaaatgcgtc aatccgtacg catcatcaaa caatgttccg agtggttgcg
     2521 tgtcaatccg ggtccggtca ttaccacaaa ccacaaattc gctccgccca aacgtaccga
     2581 aatgaaaaca ggtatggaag acctgattca ccatttcaaa ctctttaccg agggtatgca
     2641 cgttcccgag ggcgagacct acaccgctgt cgaacatccg aaaggcgagt tcggcgttta
     2701 catcatttca gacggcgcaa acaaacccta ccgcctgaaa atccgcgcac ccggcttcgc
     2761 ccatctgcaa ggcatggacg aaatggcaaa aggccacatg ctcgccgacg tcgttgccat
     2821 catcggtacg caggacatcg tattcgggga ggttgaccga taatgttatc cgcagagtcc
     2881 ttaaaacaaa tcgacacaga actggcgaaa tatcccgccg accaacgccg ttccgccatc
     2941 atgggtgcgt tgcgtatcgc ccaaaccgaa aaaggctggc tcgcccccga aaccatcgct
     3001 tttgttgccg actatatcgg catcacgcct gcacaagcct acgaagtcgc cactttctac
     3061 aatatgtacg accttgagcc tgtcggcaaa tacaaactga ccgtttgtac caacctgccc
     3121 tgcgccctgc gcggcggtat ggctaccggc gaatacctca aacaaaaact cggtatcggc
     3181 tacggcgaaa ctacccctga cggcaagttt acccttgtcg aaggcgaatg catgggcgca
     3241 tgcggcgacg ctcccgttat gctggtcaac aaccacagca tgtgcagctt tatgaccgaa
     3301 gaagcgattg agaagaaact ggcggagttg gagtaggtcg tctgaaacga cgatttaaac
     3361 gtaggtcgga tacttgtagc cgacagagtg ggtaaaaagg caaaatgtcg gatttaagaa
     3421 tccgccctac tgaaataccg aaatgccgtc attcccgcgc aggcgggaat ccaccggtaa
     3481 gattcggttt ctgaatttaa taagacattg cttaccattg aggatggatt cccgcctgcg
     3541 cgggaatgac gacagacaag caagtggtcg agatccaaca aaaacgatta aaggtcgtct
     3601 gaaaatatcg atttgataaa ctagatttta tttcagacga cgttacaagc cggtacacaa
     3661 agacatctta aggtcgtctg aaacagcggc cgcaaccgat acgaaaacaa acaggcacac
     3721 caaaaatggc tatttaccaa tcaggcgtga tttttgacca agtggatacc gccaatcccg
     3781 attgctggac attggacgaa tacgtcaaac gtggcggtta taccgccctg cgtaaaatcc
     3841 tgtccgaaaa catctcgcaa accgatgtga ttgacgaagt caaaacctcc ggcttgcgcg
     3901 gtcgtggcgg tgcgggcttc ccgaccggtt tgaaatggag ctttatgccc cgttctttcc
     3961 ccggcgaaaa gtacgtcgtt tgcaacaccg acgaaggcga gccgggtaca tttaaagacc
     4021 gcgacattat tatgttcaac ccccatgccc tgattgaagg catgattatc gccggttacg
     4081 cgatgggcgc gaaagccggt tacaactata tccacggcga aatttttgaa ggctaccaac
     4141 gctttgaggc cgctttggag caggcgcgtg ccgcaggctt tttgggtaaa aatattttgg
     4201 gttcggattt tgaattcgaa ctcttcgccc accacggcta cggtgcatac atctgcggcg
     4261 aagaaaccgc attgcttgaa tcgctggaag gcaaaaaagg ccagccgcgc tttaaaccgc
     4321 cattccctgc ttcgttcggc ctgtacggca aaccgactac catcaacaat accgaaactt
     4381 tctcctccgt ttcattcatt atccgtgacg gcggacaggc atttgccgat aaaggtattc
     4441 cgaatgcagg cggtaccaaa ttattctgta tttccggcca tgtcgagcgt ccgggcaact
     4501 atgaagtgcc attgggcaca ccgtttgccg aagtcttgaa aatggcaggc ggtatgcgcg
     4561 gcggcaaaaa actcaaggcc gttattcctg gcggttcgtc cgcgcccgta ttgcctgccg
     4621 acatcatgat gcagacaaat atggactacg actcgatttc caaagcaggc tcgatgctgg
     4681 gttctggcgc gattatcgtc atggacgaag acgtgtgcat ggtgaaagcc cttgagcgcc
     4741 tgagctactt ctactacgac gagtcttgcg gccaatgtac gccttgccga gaaggtacgg
     4801 gctggctcta ccgcatcgtc caccgtatcg tggaaggcaa aggtaaaatg gaagatttgg
     4861 atttgctgga ttccgtcggc aaccaaatgg caggccgcac catctgcgcc ctcgccgatg
     4921 ccgccgtctt ccctgtccgc agctttacca agcatttccg tgatgagttt gtgcattaca
     4981 tcgaacacgg cggaccgatg aaagagcata agtggggagg gtggtaatgg tggaagctaa
     5041 aatttttatt ctatacggtg cagccaacaa aggtaagagt acgacactca atacgctttt
     5101 taatcagatt tgtcggaaat tttctaaatt tctagtcttt tttgaaagac atggaaacgg
     5161 cttagatttt gttgcagtat ttgatcatga aggtcagaga attggttttt attcatctgg
     5221 tgataatgaa tacgaggtta ggagaaattt atacaaactt tattcgcata attgtgattt
     5281 tatttttggc acgtcaagga cacggggtgg tagttgcgat gcagtaggat gttatgcaga
     5341 gttattgcat ggcgatgtaa atataattaa ttggtgtgaa aagtttgagc ctacagatga
     5401 agacaatgag cgtgctgtta aagagttatt taagtcattt aaaaatataa taaataagtt
     5461 atagttttag ttggttttat attggttaaa agcaaaatgc taaaaattta actttgccgt
     5521 cattcccgcg taggcgggaa tccatagtgg aatctaaaga aaccgatatt tgaaaagcag
     5581 ttgccgaaat tcaaaaaatg gattcccgcc tacgcgggaa tgacggcaag gtggcagtaa
     5641 acgttttaaa cagtattgat tgtcaatgaa actcaaaagg ccgtctgaaa cccatttttc
     5701 agacgacctc cataagatta tttatcaaat acccgtaact aggaacgaac catgttacaa
     5761 atcgaaatcg acggcaaaca agtatctgtg gagcagggcg cgacggtgat tgaagccgcg
     5821 cacaagctcg gtacttatat tccgcatttc tgttaccaca aaaaactttc catcgccgcc
     5881 aactgccgta tgtgtctggt gaacgtagaa aaagccccaa aacccctgcc tgcctgtgcc
     5941 acgccggtta cagacggcat gattgtgcgt acgcattcgg caaaagcccg agaggcgcag
     6001 gaaggcgtga tggagttcct gctcatcaac catccgcttg attgtccgac ctgcgaccaa
     6061 ggcggggaat gccagttgca ggatttggcg gtgggctacg gaaaaaccac cagccgctac
     6121 accgaagaaa aacgttccgt cgtcggcaaa gacatggggc ctttggtttc cgccgaggaa
     6181 atgagccgct gtatccactg cacccgctgc gttcgtttca ctgaagaaat cgccggtttg
     6241 caagaaattg cgatggtgaa tcgcggcgaa cactccgaaa tcatgccctt tatcggcaaa
     6301 acggtggaaa ccgagctgtc gggcaacgtc atcgatttgt gtcctgtcgg cgcattgacc
     6361 agcaaaccgt tccgcttcaa cgcgcgtact tgggaattga accgccgcaa atccgtttcc
     6421 gcccatgacg ctttgggcag caacctgatt atacaaacca aagaccatac cgtccgccgc
     6481 gtgttgccgc tggaaaacga agcgattaac gaatgttggc tgtctgaccg cgaccgtttc
     6541 gcctacgaag gcctgtatca cgaaagccgt ctgaaaaacc cgaaaatcaa acagggcggc
     6601 gagtggatgg acgtggattg gaaaaccgcg ttggaatatg tccgcagcgc gattgaatgt
     6661 atcgccaaag acggcaacca aaaccaagtc ggcatttggg ccaatccgat gaatacggtt
     6721 gaagagctgt atctggccaa aaagcttgcc aatggtttgg gtgttaaaaa ctttgccacc
     6781 cgtttgcgcc aacaagacaa acgtctttca gacgacctta aaggtgcaca atggttggga
     6841 caaagcattg aatctttggc tgacaacgat gccgtattgg tagtcggtgc gaacctgcgc
     6901 aaagaacagc cgcttctgac cgcccgcctg cgccgcgccg ctaaagaccg catggctttg
     6961 agcgtattgg caagcagtaa agaagaattg tttatgccgc ttctgtctca agaagccgta
     7021 catcccgacg agtgggcagg tcgtctgaaa aacctgtctg ccgatgcgga acacgccgtt
     7081 accgccagcc tgaaaaacgc tgaaaaagca gcggtgattt tgggcgcgga agtgcaaaac
     7141 catcctgatt acgccgcgat ttatgccgcc gttcaagagc tggcagatgc gaccggcgca
     7201 gtgctgggta ttttgccgca agccgccaac agcgttggtg cggatgtctt gggcgtgaac
     7261 tcgggcgaga gcgttgccga aatggcaaac gcgccgaaac aggcagtctt gctgctcaac
     7321 gtcgagcctg aaatcgatac ggttgacggt gcaaaagctg tagccgcatt gaaacaagcg
     7381 aaaagcgtga tggcgtttac gccgtttgtc agcgaaacgc tgctggacgt gtgcgacgta
     7441 ttgttgccga ttgcgccgtt taccgaaacc tcgggcagct tcatcaatat ggaaggccgt
     7501 ctgcaatctt tccacggcgt ggtacaaggc ttcggcgatt cgcgtccgat gtggaaagtg
     7561 ttgcgcgtat tgggcaacct gtttgacctg aaaggttttg aataccacga taccgtcgcg
     7621 attctgaaag acgcgctgga tgcggaaagc ctgccgtcca aactgaacaa ccgcgccgct
     7681 tcgactcaaa aagattttca gacggcatca agccgcctcg tgcgcgtggg cggagtgggc
     7741 atctatcaca ccgatgctat cgtgcgccgt tccgcaccgt tgcaagaaac cagccatgcc
     7801 gccgtgcctg ctgcgcgtgt aaatccaaat acattggcac gcttgggcct gcaagacgga
     7861 caaaccgctg tcgccaaaca aaacggcgca agcgtatcgg ttgccgtcaa agccgatgcc
     7921 ggtttgcctg aaaacgtggt gcatttgccg ctgcataccg aaaatgccgc gctgggtgcg
     7981 ttgatggaca ctattgaact ggcgggagct tgatcatgca agaatggttc caaaacctct
     8041 ttgccgcaac gctcggtctg ggcgatttgg gtattactgt aggcttggtg gtatccgtca
     8101 tcgtcaaaat tgtgattatc ctgattccgc tgattctgac cgtcgcctac ctgacttatt
     8161 ttgaacgtaa agtcatcggc ttcatgcagc ttcgcgtcgg tccgaacgta accggtccgt
     8221 ggggtctgat tcagccgttt gccgacgtgt tcaaactctt gtttaaagaa gtaacccgtc
     8281 cgaggctgtc aaacaaagcc ctgttctaca ttggtccgat tatgtcgctc gccccgtctt
     8341 ttgcggcgtg ggcggtgatt ccgtttaacg aagaatgggt gctgaccaac atcaatatcg
     8401 gtcttttgta catcctgatg attacctcgc tgtcggttta cggcgtgatc atcgcgggct
     8461 gggcttccaa ctccaaatat tcgtttttgg gcgcaatgcg tgcttccgca caaagcattt
     8521 cctacgagat tgccatgagt gccgcgctgg tgtgtgtcgt gatggtatcg ggcagcatga
     8581 acttctccga catcgttgcc gcacaagcca aaggtattgc cggcggttcg gtattctctt
     8641 ggaactggct gccgctcttc cccatcttta tcgtctatct gatttccgcc gttgccgaaa
     8701 ccaaccgcgc gccgtttgac gtggcagagg gtgagtctga aatcgttgcc ggacaccacg
     8761 tcgaatactc cggcttcgca ttcgcgctgt tcttccttgc cgaatacatt ttcatgattc
     8821 tgattgccgc gctgacatcg ctgatgttcc tcggcggctg gctgtctccg ttcccgcaaa
     8881 gttggggctt tatcggcaca ccttccgcat tctggatgtt cgtgaaaatg gcggcggtgt
     8941 tgtactggta cctgtggatc cgtgcaacct tcccgcgcta ccgttacgac caaatcatgc
     9001 gtttgggctg gaaagtgctg attccgatcg gcttcgccta catcgtggtt ttgggcgtgt
     9061 ggatgatttc accgctgaat ttgtggaaat aagtttcaga cggcatcttg aggccgtctg
     9121 aacaaagcga ttttgaatac ctaacgaaat ccctgttttg agggaacata atatggctaa
     9181 cttagtaaaa acctttctgc ttggcgaatt ggtaaaaggt atgggcgtaa cgctcaaaaa
     9241 ctttttcgcc cgcaaagaca cgatttattt tcccgaagag aaaacgccgc aatccgtgcg
     9301 tttccgcggc ctgcacgcgc aacgccgtta tccgaacggc gaagagcgct gtattgcgtg
     9361 taaattgtgt gaggcagttt gtccggcaat ggcgattaac atcgaatcgg aagaacgtga
     9421 agacggtacc cgccgcacca agcgttacga catcgatctg accaagtgca tcttctgcgg
     9481 tttctgcgaa gaggcctgcc cgaccgatgc gattgtggaa acccatattt ttgaatacca
     9541 cggcgagaaa aaaggcgact tgcacatgac caagccgatt cttttggcca ttggcgataa
     9601 atacgaagct gaaatagcca aacgcaaagc cgctgacgcg ccgtatcgtt aatgctttgg
     9661 ggcttcttgg aaggttttaa atatggaagg actgattaat gcattgaaat atttagccga
     9721 acatgagcca atagataatt ttgaagaaat tagaactaga aatagtccga ttgagttgcc
     9781 aagtggatta agtaattttg aacaaaatat ttttttaaaa gaaaatttat ccccaaaatt
     9841 acaaaatgat gatagcttga agacgcatta ttggattatc cgtgaatggg gtgggattaa
     9901 aagttttaaa caatctgctg aaaatagcca gcttattcgt caatttttat cggaacttaa
     9961 ttcgggaaaa ttgagtagtg gtttgttgaa aatttcatca ttatctaaat tggcttcttt
    10021 tatagattgt gagcgattcg ccatttatga ttcacgcgct attttttcgt tgaattggtt
    10081 gttgtttaaa tttacaaatg cagatttgtt ttttcagcca caaggtagaa atagggaact
    10141 agaaatccga aatatgaacg tattgtttca tttttctgat atcaaaccga attatcggaa
    10201 accagacgtt tcgtttcatc aatattgtgg attgttacaa gatttggcga aacaagttta
    10261 tggtaaacaa gcaaaaccgt atcacataga aatgttgtta ttcaaaattg cgacaacgtg
    10321 gatttgtgcg gatatggatc aactgattaa gtttgattgt ttgcgtaacc aggattttca
    10381 gactgcttga aaccatattt ttgattaata aagaaagcat agactatgac tttccaactg
    10441 attttatttt atatttttgc agtgataatt ctttatggcg cgatcaaaac cgtcaccgct
    10501 aaaaatcctg ttcacgccgc tttgcatctg gtgttgacct tctgcgtgag cgcgatgatt
    10561 tggatgctga tgcaggcgga gtttttgggc gttacgctgg tggtcgtgta tgtcggcgca
    10621 gtgatggtat tgttcctgtt cgtcgtgatg atgttgaaca tcgacattga agaaatgcgt
    10681 gccggtttct ggcggcacgc gcctgttgcc ggtgtggtcg gcacattgtt ggcagttgcc
    10741 ctgattctga ttctggtcaa tccgaaaacc gaccttgccg catttgggct gatgaaagac
    10801 attcccgccg attacaacaa tatccgcgat ttgggcagcc gtatttatac cgattatctg
    10861 ctgccgtttg aattggcggc ggtattgctg ctgttgggta tggtggccgc gattgcgctg
    10921 gttcaccgta aaacggttaa tccgaaacgt atggatcctg ccgaccaagt taaagtacgc
    10981 gccgaccaag gccgtatgcg cttggtgaaa atggaagccg tgaaaccgca aaccgaatct
    11041 gccgaagaaa gcgaagtttc agacgacctc aagccgaaag aggagggcaa agcatgatta
    11101 ccttgacgca ttatctggta ttgggtgcgc tcctgttcgg tatcagcgcg atgggtatct
    11161 ttatgaaccg caaaaacgtg ctggtcttgc tgatgtccat cgagctgatg cttttggcag
    11221 tgaacttcaa ctttatcgcc ttttcgcaac atttgggcga tactgccgga caaattttcg
    11281 tatttttcgt actgaccgtt gctgctgccg aatctgccat cggtttggcg attatggtgc
    11341 tggtgtaccg caaccgacaa acgattaatg ttgccgattt ggacgagttg aaagggtaaa
    11401 ggtaggttgg gtcgagacct gacaagacac cgatgccgtc tgaaaacccg ataggaaaaa
    11461 cgatgaaatc catagacgaa caaagcctgc ataatgcccg ccgcctgttt gaaagcggcg
    11521 acatcgaccg tatcgaagtc ggtaccaccg cgggcctgca acagattcac cgttacctgt
    11581 tcggcggctt atatgatttt gcgggtcaaa tcagggaaga caacatttcc aaaggcggtt
    11641 ttcgttttgc caacgccatg tatttaaaag aggctttggt taaaatcgag cagatgcccg
    11701 agcggacttt tgaagaaatc atcgccaaat atgttgaaat gaacattgcc catccgtttt
    11761 tggagggtaa tggcagaagt acccgcatct ggctggattt ggtgctgaaa aaaaacctga
    11821 aaaaagtcgt gaactggcaa aatgtaagta aaaccctgta tttgcaggcg atggaacgca
    11881 gccccgtcaa cgatttagaa ctgcgctttc tgttaaagga caacctgact gacgatgtgg
    11941 acaaccgtga aatcatcttt aaaggtatcg agcagtcgta ttattacgaa gggtatgaaa
    12001 aaggctgagg gtcgtctgaa aagcgatttc agactgtttc agacgacctg attcggtagg
    12061 tgatcagacg ggagcggatg agaaaagaaa ttctgggtaa gaataatccg gtctgaaata
    12121 ttggaagaag aatgatggat aaaaatcagt tagaacaaga atttcataaa gccatgttaa
    12181 atatttatca ggaggctttg aatttgccgc aaccttacaa ggcgacacga tttttacaaa
    12241 ttgtaaatga atttggtggt aaagaggcgg cggataaatt attgagtacg ggggaaaaga
    12301 agactcagac cggttttaca gagctgattt tgagtggtgg cggagtccac gccttgaaat
    12361 acagtatgga atatctggtg ttacaaaagc cgtggtgtga tttatttact gaagagcaat
    12421 tagctgtggc acgcaaacga ttggagcgtg ttggatttgt ttttccgaag taattttgta
    12481 cgaaacaaac atagattttt aaatcaatcg gattcaatca aatgaacgac atgactttat
    12541 atctcatcat cgccctcgtg cctttggcag gctcgctgat tgcgggttta ttcggcaaca
    12601 aaatcggacg tgccggcgcg cataccgtaa caatactcgg tgtggcggtg tctgccgtgc
    12661 tgtcggctta tgtgttgtgg ggctttattg acggcagccg tgccaagttt gacgagaacg
    12721 tttatacctg gctgacaatg ggcggcttgg atttttccgt cggcttcttg gtcgatacga
    12781 tgacggcgat gatgatggtc gtggtaacgg gcgtgtcgtt gatggtgcat atctacacca
    12841 tcggctatat gcacgatgaa aaagtcggtt accaacgctt cttcagctat atttctttgt
    12901 ttactttcag tatgttgatg ctgattatga gcaacaactt catccagctc ttcttcggtt
    12961 gggaagcggt gggcttggtg tcgtatctct tgatcggttt ctatttcaaa cgtccgagcg
    13021 cgacatttgc caacctgaaa gcctttttga tcaaccgtgt cggcgacttc ggctttttgc
    13081 tcggtatcgg cttggtgctt gcctatttcg gcggcagcct gcgctatcaa gatgtattcg
    13141 cttatctgcc taatgttcag acggccacca ttcaattgtt ccccagtgtg gaatggtctt
    13201 tgattactgt aacctgtttg ctcctgtttg tcggtgcgat gggtaaatcg gcacaattcc
    13261 cgctgcacgt ctggctgcct gattcgatgg aaggcccgac cccgatttct gcattgattc
    13321 acgccgcaac catggttacc gccggtctgt tcatggtatc gcgtatgtcg ccgatttatg
    13381 agatgagcag cactgcgctg tctgtcatca tggtaatcgg tgcgattacc gccctgttta
    13441 tgggtttctt gggcgtgatt caaaacgaca tcaagcgcgt ggttgcgtat tccaccctgt
    13501 cgcaactggg ctatatgact gtggctctgg gcgcgtctgc ctattccgtg gcgatgttcc
    13561 atgtgatgac ccacgctttc tttaaagcct tgttgttctt ggccgcaggt agcgcgatta
    13621 tcggtatgca tcacgaccaa gacatgcgcc acatgggcaa cctgaaaaaa tacatgccga
    13681 ttacttggtt gaccatgttg atcggtaact tgtcgctgat tggtacgccg ttcttctccg
    13741 gcttttactc caaagattcg attatcgaag cggcgaaata cagcaccctt cccggcagcg
    13801 gctttgccta ttttgccgtc cttgccagcg tgttcgttac cgcgttttac gcgttccgcc
    13861 aatactttat ggtgttccac ggcgaagaga aatggcgcag cctgcccgaa caccattcag
    13921 acggacatgg cgaagaacat cacggcttgg gcaaaaacga caatccgcac gaaagcccgc
    13981 tgttcgttac cctgcctttg attttgcttg ccattccgtc cgtcatcatc ggctatgttg
    14041 ccatcgggcc tatgctttac ggcgatttct tcaaagacgt gattttcgtc aataccgacg
    14101 cgcatccgac catgcacatc atgaaggaag agttccacgg cgcattggca atggtgtcgc
    14161 acagcctgca ttctcctgta ctctacctcg ctatcgcagg tgtattgagc gcatggcttt
    14221 tgtacgtcaa actgccgcac ctgcctgcga aaattgcaca ggcgttccgt ccggtttacg
    14281 ttttgtttga aaacaaatac tacctcgacg ccctgtattt caacgtcttc gctaaaggca
    14341 cgcgcgcact gggtaccttc ttctggaaag tcggcgatac cgccattatc gataacggca
    14401 tcgtcaacgg ctctgccaaa ctggtcggcg cgattgccgc gcaagtgcgt aaagcccaaa
    14461 ccggctttat ctacacctac gccgccgcta tggtgttcgg cgtattggta ctgctcggca
    14521 tgaccttctg gggattgttc agataaggat gaggcttcag acggtctctt aaaacgtcgt
    14581 ctgacaaacc aacccgtaca acgatatttt tattttaacc acaggttaac cactatgttt
    14641 tccaactacc tactcagctt ggcaatatgg atacccatcg ccgcaggtgt gctggttttg
    14701 gcaacggggt cggacagccg tgcgccgctg gcgcgtgtgc ttgccttcat gggtgcgctt
    14761 gccggtttct tggtaacgct gcccctgttt accggtttcg accgtttgag cggcggctat
    14821 caatttaccg agttccacga gtggattccg ctgctgaaaa tcaactatgc attgggcgtg
    14881 gacggtattt cagtgctctt tatcatcttg aatgcgttta ttacgctgtt ggtggtattg
    14941 gccggttggg aagttattca gaaacgtccg gcgcagtata tggcggcatt cctgatgatg
    15001 tcgggtttga ttaacggcgc gtttgccgca caggatgcga ttctgtttta tgtgttcttc
    15061 gagggtatgc tgattccgct gtacctgatt atcggtgtat ggggtggccc gcgccgcgtt
    15121 tatgcgtcgg tcaagctgtt cctctatacg ctgatgggtt cgcttttgat gctggttgcc
    15181 atggtttacc tgtactatca gacaggcagc ttctctattg tcgatttcca aaacatcaag
    15241 cagattccat tgggcgtaca acagcttttg tttgtggcat tcttcctgtc atttgccgta
    15301 aaagtgccga tgttccctgt acatacttgg ttgccggatg cccacgttga agcgccgacc
    15361 ggcggttcga tggtgttggc ggcaattacg ctgaaactgg gcgcgtatgg tttcttgcgc
    15421 tttatcttgc cgattatgcc ggacgcggca cgctattttg cccccgtaat catcgtattg
    15481 agcctgattg ccgtgattta catcggtatg gtggctttgg tgcagaccga tatgaagaaa
    15541 ctggtggcgt attcgtccat cagccatatg ggttttgtaa cgcttgggat gtttttgttt
    15601 gttgacgggc agttggacga ctgggcgttg aaaggcgcaa tcattcaaat gatttcccac
    15661 ggttttgtgt ctgccgcgat gtttatgtgt atcggcgtga tgtacgaccg cctgcacacg
    15721 cgcaatattg ccgattacgg cggcgtggtc aatgtgatgc ccaagtttgc ggcgtttatg
    15781 atgctgttcg gtatggcgaa cgccggcctg ccggcgactt ccggcttcgt gggcgagttt
    15841 atggtgatta tgggcgcggt taaagtgaat ttctgggtag gcgcgttggc ggctatgacc
    15901 ttgatttacg gtgcgtctta taccctgtgg atgtacaaac gcgttatttt tggtgcgatc
    15961 cacaatccgc acgttgccga aatgaaagac atcaactgcc gcgaatttgc gattttggcg
    16021 gtgttggcgg ttgcggtatt gggtatgggt ctgtatccga acgcatttat cgaagtggtg
    16081 catcaggcgg caaacgattt gattgcccat gtagcgcaaa gcaagatttg aggtgtgtaa
    16141 atgaactggt ctgatttgaa tttaatgccc gcactgcccg aagtcgcgct gctgtcgctg
    16201 ctggtgttat tgttgctggc agacttgtgg gtcagtgatg acaaacgccg ttggacgcat
    16261 tacggcgcgt tggcaacggt ggcggttacg gcggcggtgc agcttgccgt ttgggaacag
    16321 ggcagcacgt cttcgttcaa cggcatgtat attgcagacg gtatgtcgcg tttggcaaaa
    16381 atggttttat atgccttgac gtttgccctg tttgtttatg ccaagcccta caaccaagtg
    16441 cgcggtattt tcaaaggcga gttttacacc ctgtcgctgt ttgccctctt gggcatgagc
    16501 gtgatggtga gcgcggggca ttttttaact gcctatatcg gtttggaact cttgtcgctc
    16561 gccctttacg ccctgattgc cctgcgccgc gattccggct ttgccgccga agccgccttg
    16621 aaatattttg ttctgggcgc gctggcatcc ggcctgctgc tctacggtat ttctatggtt
    16681 tacggcgcaa ccggttcgct ggaatttgcc ggcgtgctcg cctcttcctt caatgaagaa
    16741 gcaaacgaat ggctgttgaa actgggtctg gtgtttatcg tcgtcgccgt tgcgttcaaa
    16801 ctcggcgcgg tgccgttcca tatgtgggtg cccgacgtgt atcacggcgc gcccacttct
    16861 gttaccgcct tggtcggcac tgccccgaaa gtcgccgccg tcgttttcgc tttccgcatc
    16921 ctcgttaccg ggctgggaac cgtgcatcat gactggtctc tgatgtttgc cctgcttgcc
    16981 gccgcctcgc tgctggtcgg caaccttgcc gccatcatgc agaccaatat caaacgtatg
    17041 ctcgcctatt ccaccgtatc gcatatgggc tttatcttgt tggcgtttat ggcaggcgcg
    17101 gtcggctttg cggcgggtct ctattacgcc attacctacg cgctgatggc ggcggcaggg
    17161 ttcggcgtgt tgatggtgtt gtcggatggg gacaacgagt gcgaaaacat cagcgatttg
    17221 gcagggttga accaacaccg cgtatggctt gcctttttga tgctgctggt tatgttctct
    17281 atggcgggca ttccgccgct gatgggcttt tacgccaaat tcggcgtgat tatggcactc
    17341 ttaaaacaag gctatgtttg gttgtccgta tttgccgtcg tgatgtcgct gattggcgcg
    17401 ttctactacc tgcgcgtggt caaagtcatg tattttgacg aatccggccg cgcccgtccc
    17461 accgtcggcg gcaacaatgc cgcaaaattc cttttgagcg tcaacgcgct gctgttggtg
    17521 ctgtggggca ttatgccgca aaccgttatc gactggtgcg ccaaggcgtt ggaaaacacg
    17581 ctgtaagccg ccgcaacggc agccgtgtca gaggctgccg tttttgttaa gatatgccgt
    17641 tccgcaacgc agttcagacg gcatcgccgc cgacaatgcc caaacagaaa gcccgccatg
    17701 accgcatcca tgtacatcct tttgctgctt gccttgattt ttgccaacgc ccccttcctc
    17761 acgaccaggc tgttcggcat cgtaccgctc aagcgcaaac atttcgggca ccacttgatc
    17821 gagctggcgg caggtttcgc gctgaccgcc gttcttgcct acatcctcga atcccgtgcg
    17881 ggagcggtac acgatcaggg ttgggagttt tacgccaccg tcgtctgcct gtacctgatt
    17941 tttgcgtttc cctgtttcgt gtggcggtat ttttggcaca cgcgcaacag ggaataggca
    18001 ggcataggaa tgccgtctga aaccctttca gacggcattt gtttcattca agtgcaggcc
    18061 ggcatcgctg tgccggcacg tttcagccgg cgatatacgc cggttttaat atttgcgggc
    18121 gactgcaaat tctgccaact gccgcaggcg cagggctttg tcgccgaagg gttcgagcag
    18181 cgcgaccgct tcggcaacca gtttgtgtgc gtatgagcgc gccgcttcca agcccatcag
    18241 tttcacataa gtcggcttgt cgttgtctgc gtctttgccc gccgttttgc ctaaagtcgc
    18301 cgtgtccgct tcacaatcca acacatcgtc aatgacttgg aacgccagcc ccagttttgc
    18361 cgcataatcg tccaataccg ccagactgtc ttcagacaga ttcgggcagg acatcgcccc
    18421 caataaaacc gccgcacgga ttagcgcacc cgttttcagg ctgtgcatct gttccaaatc
    18481 ggcttgaacc atttgtttgc cgacattcgc caaatcgatt gcctgaccgc ccgccatgcc
    18541 cgcgctgccg cccgctttcg ccaacaccga caacattgcc aactggcgtg ctgcgggcag
    18601 ttctgtcgga cggcttaaca cgtcgaaggc ttgggtttgc aaagcgtcgc cgaccagtag
    18661 cgcggtggct tcgtcgtatt gtatatggca agtcggtttg ccgcgccgca ggctgtcgtt
    18721 gtccatcgcc ggcatatcgt cgtgaaccaa agaatagacg tggatcattt cgattgccgc
    18781 cattgcctgt tctactgctt catgcacggc ttcgcctaat tccgaagctg ccagaaccag
    18841 catcggccgc agacgcttac cgccgtccaa agccgcataa cgcatcgctt cgtgcagcgt
    18901 gtgcgggatt tcgttttcag acggcaaaaa gcgttccagc agcagctctg tctgtgcctg
    18961 cgccctctgt tgccacgctt tcaaatcatt cgtcggattc aaggttcaac tccttcagcc
    19021 cgtccgcatc caaaacctgt aatttctgtt cgacttgtgc cagcttggtt tggcagtacc
    19081 tgaccagctc gttgccttcc tgataggcgg caagcgcgtc ttccaagggc atttcgccct
    19141 gcatagactg cgtcagcgat tcaaggcgcg acaaggcttc ttcaaacgat ttcggggcgt
    19201 ttttcttcat cgtgtttcct tttcggttga aaccccgcca cttggacatc tgtccttcgg
    19261 ggcggtagaa tcagacttta tttgggaggg gtgtaagccc ttccaaatca ggacgacaca
    19321 tagggcggtg ctttaagtgt cgtcctgcgt gttggaacat agtttcggat gttccggtaa
    19381 aaagcggatt gtagcatttt tgaaaaacgg atgccgtctg aaacccgaat ccggtttcag
    19441 acggcattgt tttgtcctgc aaacggcaag gcgttacccg ggcagttcgt cggtgatgcc
    19501 ctgcaaaaag gcgaggcgtt cggggcttgc cgccctggtt tcggcggcgg ctttgaaggc
    19561 gcagccgggt tcggcgcggt gggtgcagtt gtggaagcgg cattgcccga caaggtggcg
    19621 gaaatcgggg aaatagcgcg gcaaatcggc ggcttggagg tggtgtaaac caaattcttg
    19681 caaacccggg gagtcgatga gttgggtttc gccgttcaaa tcataaagcc gggcgtgggt
    19741 ggtggtgtgt tttcccgagt cgagtgcggc ggaaatgtcg ccggtgcggg cggtttggct
    19801 gcccaaaagg gcgttggtca gggtggattt gcccataccg ctctgcccga gcaggatgtt
    19861 gctgtgccct tgcagggcgg ggcgcaggct gccggcgttt tccagtgcgc gggtttcgat
    19921 gacgggataa cccagcgttt cgtagaattt gagtttttcg cgccaaaggg cggtttcggg
    19981 caggtcggct ttgttcagga cgatgacggc gcggatgccg gcggcttcgg cggcaagcag
    20041 ggcgcgctgt agcagccgca cgctcggact cgggacggcg gcggttacga tgaggagttg
    20101 ggtaacgttg gcggcaatga gtttggtttt ccacgcgtct tggcggtaga gcaggctttg
    20161 gcgcggtaaa aaatcttcaa tcacaacttg ttcggcgttg acggggctga tgcggacgcg
    20221 gtcaccgcag gcgaaatcga cgcgtttttt gcgggtgctg gcttcgtagg ttgtgccgtc
    20281 gggcgtgcgg acgatgtagc ggcggccgta gctggcggta atttgggcgg tgtcgttcat
    20341 ggtttctttg gggttgggtg tggaaatgcc gtctgaaaac gggtgttcgg acggcatcgg
    20401 ttcagtcgtg ctgccactcg acgtgttcgt tgaggaagcc gccgctctgg tgcgcccaga
    20461 gtttggcgta aagcccgcgt ttttcgagga gttcggcgtg tgtgccttct tcgatgatgc
    20521 ggcctttgtc gaggacgacg agcctgtcca ttgcggcgat ggtggagagg cggtgggcga
    20581 tggcgatgac ggttttgccg tccatcattt tgtcgaggct ttcctggatg gcggcttcga
    20641 cttcggaatc gagcgcgctg gtggcttcgt ccaaaagaag aatcggcgcg tctttgagca
    20701 tcacgcgggc aatggcgatg cgctggcgtt gcccgccgga gagtttcacg ccgcgttcgc
    20761 cgacgtgcgc gtcatagccg cgccgccctt tggcatcgga aagttcgggg atgaagccgg
    20821 cggcttcggc gcgttcggcg gcggaaacca tttcggcatc ggtcgcgtcg gggcggccgt
    20881 aaataatgtt gtcgcgcacg gaacggtgca gcagcgaggt atcttgcgtg accaaaccga
    20941 tttgggcgcg taaagattct tgggtgatgc cgcttatgtc ctgcccgtcg atcgaaaccg
    21001 tgccgctttg cggttcgtag aagcgcaaaa gcaggttgac gatggtggat ttgcccgcgc
    21061 cgctgcgtcc gatcaagccg accttttcgc cgggtcggat ggtgaggttg aagccgttga
    21121 gcagcggttt gcccgcttcg taggagaaat cgacgtgttc aaatttgatt gcgccttgcg
    21181 gcactttcaa cggcagggcg ttcggcttgt cgaggatggt gtgcggtttg gacagggttg
    21241 ccatgccgtc gccgacggtg ccgatgtttt caaacagccg cgcggattcc cacataatgt
    21301 attgcgacaa accgttgacg cgcaacgcca tggcggtggc tgtagcaacc gcgcccacgc
    21361 cgacctgccc gttgtgccag agccagatgc ccagtgcggc ggtggagagg gtcagggagg
    21421 tgttgacgat gaagctgcac gaatgcagca gcgtcgccag ccgcatttgg gcgcgcaccg
    21481 taaccataaa ttcttccatc gactgcttgg cataggcggc ttcacgcgcg ccgtgggaga
    21541 agagtttgac ggtggcgata ttggaatagg catcggtaat gcggccggtc atcagcgagc
    21601 gggcatccgc ctgccatgcg gcggtttgcc ccaatttggg aatcagcagg cgcatcaccg
    21661 aagcgaaacc gacaatccag ccgataaagg gcagcagcag ccatgagtcg agcgaggcga
    21721 gaatcacgcc ggaggtaatg aaatacaccg acacataaac gaccatatcg gcaaccgtca
    21781 tcaccgcgtc gcgcaacgcc agcgcggtct gcatgacttt ggcggacacg cgtccggcaa
    21841 attcgtcctg ataaaaaccg aggctttggt tcagcatcag gcggtggaag ttccagcgca
    21901 ggcgcatagg gaacacgccc tgaagggttt gcaggcgcac gttggacgcg gcaaacgccc
    21961 acgcaaccga aaacaccatc atcgccgcca ttgccgccag ttcccaacct ttttcggcaa
    22021 acagttcggt gggcgcgtat ttgccgagcc actccacgat tttgcccata aattgaaaaa
    22081 ccagggcttc cataatgccg atgccggcgg tcagcgcagc cagggcggct atccatttcc
    22141 gcacgccggt catgctgctc cagacaaacc gccacaagcc tttttctggc gttttcgggg
    22201 cggcttcggg ataagggtcg attcgggact cgaaccagga aaatattttg ttcaacattg
    22261 ttttcgattt cggtaaaaca gtttcagacg gcatcaaaca caatgccgtc tgaaaggaag
    22321 gacaataacg ccattttacg ggaaaagccg tcgggaagac agcgcggggc ggaaacgcag
    22381 ggtttcgtca gggcaaacgc cgcgccgcct tcagacggca ttatttcagc aggtttttca
    22441 aagcaaggcg cacgccttcg cccacgtccg tcccctccgg aacgcctttg accgccgctt
    22501 ttgcttcgcg ttcgctgtaa cccagcgcaa gcagcgtgct gacgatgtct tccgtttcgt
    22561 cggcggcggg tgcggcggca aacagcccgt ccgttaccgt atgcgcgacc agcttgccgc
    22621 gcagttccaa gaccatacgt tcggcggttt ttttgccgat tcccggcgcg gaagacaggc
    22681 gtttgacatc ttcttctgca accgcctgcg ccagctcgtc tgccgtcatc gccgacaaaa
    22741 tgcccaaagc ggtttttgcc ccgatgccgc tgaccttgat cagttggcgg aatgttttgc
    22801 gctcttccgc agtggcaaaa ccaaataaaa gatgtgcgtc ttcccgaatg ataagctggg
    22861 taaacagttg tacgctttca cccacgggcg gcaggttgta gaaggtctgc atcgatacgt
    22921 cggcctcata gccgacaccg ttgacatcga tgacgatttg cggagggttt ttttcaacca
    22981 gtttgccggt cagtctgctg atcatgtgtg ccgaatcctg aagtgtcggg tgcaaaatgc
    23041 cgtctgaaac cggttcgggc ttcagacggc acggattgta tcaaattcag tcgtcgcggc
    23101 gggaggaaat cacgcggccg gtacgggcat cgacaacgac tttgtattcc tgtccgtttt
    23161 tgacgatttc gacatcatag tgcggacggc cgttgtcgtg ttcgagatcg atgtcggtga
    23221 ttttgccgcc gacacgcgcc aacgctgctt tttcggcttg ggcgcggctg atgattttgt
    23281 cttgtttgtt gtgttggtgt gcggcgtgtc cgtggtcgtc atcgccgtgt ccgtcgtggt
    23341 gggcgagtgc gggggcggaa atgcccatca gtgcggttgc ggcggcggtc aagagaaggc
    23401 gtttgaagtt catgttttgc tcctgcgaag tatctggtgg tgtttgaaag acgtaaaggc
    23461 gggacatcaa ccggcggtca ataccgtctg aatcataccg cgcgcctgag cttcggcctc
    23521 ggcggcgcgt tcctgcgagg caaacggacc cattttgacg acgtattcgt aacggcgttt
    23581 ttcaatggcg aggttcgggc ttgatgtcga agcggcgaag ttttgggcgg cttggttcag
    23641 ataggcttgt gcttcgtgtt ccgtaccgaa agatttcaag tcgataaaga tgtctttgtt
    23701 ttcggcaacc ggtgcggatt tgcccgggac gatttgttcg attttgacgt gcgccgtccc
    23761 ttggctgaca aagcccaatt tttgcgcggc ggctttggat acgtcgatga tgcggttgcc
    23821 gtggaagggg ccgcggtcgt tgacgcggac gatgacgctt ttgccgtttt tggtattggt
    23881 tacgcgcaca tagctgggga tgggcagggt tttgtgggcg gcggtaaagg cgttcatatc
    23941 gtatcgttct ccgccggaag ttttgcgccc gtgaaacctg ccgccgtacc acgaggcgtt
    24001 gccggtttgc gtgaattcgg cgacttggtt tttcggcgtg tagcgttttc cggcgacttt
    24061 gtagctgcgg ttggcggagg cgtgcagttt ttctgccttg accactgcgt cggcggatgc
    24121 cgtctgaagg gagtgtgtgc cgaatgcggc ggtgagaagg aaaagggttt ttcgggttaa
    24181 agtcaaaacg tgttccgttc ttgagttgaa gacgaatggg catcatgccc gccggatacg
    24241 ttccgaaccg ccgtacagtg cggacggcgg ttcggaatgt gtccggatag gttttcagac
    24301 ggcatgaact tgcgttcaaa cgccgcctgc gtaaccgtgt tgccgccacg cttcaaagag
    24361 aatcacggca acggtattgg aaaggttcat actccggctg ccgggctgca tcggcaggcg
    24421 gattttttgc gcggcgggca ggctgtcgag gatgtcggca ggcagtccgc gcgtttccgg
    24481 cccgaacagt aaaacgtcgc ctttttgaaa cgcggtttca tcggggcgcg ccgtgccttt
    24541 ggtggtcagg gcgaaaatgc gcctgcctgc gagtgccttg aggcagtcgt cgaagttttc
    24601 gtacaccgcc aggctggcga attcgtggta gtcgagcccg gcgcgtttca ttttggcgga
    24661 atccaatggg aagccgagcg gtttgacaag gtgcaaatcc gcgccggtat tggcgcacag
    24721 gcggatgatg ttgcccgtgt tcggggggat ttccggttgg tataaaacga tggtaaacat
    24781 aaatatcaat cacttatagg cgcgtaacct tgccacaagg cggatggggt gtcaaaaaat
    24841 ttagttattt tttcattggc gtgcgtgcca gcgtccagca gcagatgcgg tttgcgccta
    24901 attttttcag cgtctttgcc aattcgtcca gcgtcgcgcc ggtggtaaag acatcgtcga
    24961 ttaacagaat attacagttt tccggtatcg gtgtgcggat ttcaaaggcg tttttgatgt
    25021 ttcgccgccg ttcgccgcct ttgagcgtgc tttgcggcgg gcggtggtgt cggaaaacgg
    25081 tgtgtcgggg cagtatctgc cagccgtagc gttgtgccag cagcccgacg atgctttcac
    25141 tttggttgaa cccgcgttgc agcagccgct ccctgcttag cggtacgggc aggacgaaat
    25201 cgaaacattc gtctgcaagc cggtcgggcg gattctgcat catcaggtct gccagcggct
    25261 gcaccatgct caaatcagcc aagtgcttca gcgcgtgtat catattgctg acgggcggtt
    25321 cgtaatgcag cgaagcccac atccggtcga atgcgggcgg ttttttctga cagccgccgc
    25381 acaccgcgcc gccttggatg tgtctgaaac acagggggca gctgtttgcc gcgtcggtgc
    25441 ggtatgccgc caaatcgtcg cggcagccgg cgcagatgcc gtctgaaacg ccggacgaac
    25501 cgtggcataa tacgcaacgc ctgatagtgg gcgcgtctgc gatgcgccgc caacgagaga
    25561 gaaaatccat gcctgatgcc gtcaaaaaag tttacctgat acacggttgg ggggcgaacc
    25621 gccacatgtt cgacgatttg atgccgcgcc tgcctgcaac gtggccggtg tccgccgtcg
    25681 atttgcccgg acacggcgac gcgcccttcg cgcaaccctt cgatattgag gcagccgccg
    25741 acgctgttgc cgcacaaatc gatacgcccg ccgacattct cggctggtcg ctcggcggat
    25801 tggtcgcgct gtatctggcg gcgcgccatc ccgacaaagt ccgttcgctc tgcctgacgg
    25861 cgagtttcgc acggctgacg gctgccgaag attatcccga agggcttgcc gcgcctgcat
    25921 tgggcaaaat ggtcggcgcg ttccgaacgg attatgccaa acatatcaaa cagtttctac
    25981 aactccagct tttgcacacg catgatgcgg acagaatcat aggcagaatc ctgcccgatt
    26041 tggcgcgctg cggcacgccc tccgccttac aggaagcttt ggacgcggcg gaaagggcgg
    26101 atgcgcggca tttgttggac aagatagatg ttccggtact gctggtgttc ggcggcaaag
    26161 acgcgattac accgccgcgt atgggtgagt atctgcatcg gcatttgaaa ggaagcaggc
    26221 tggttgtgat ggaaaaggcg gcacacgcgc cgtttttgag ccatgcggaa gcgtttgccg
    26281 cgctgtaccg cgactttgtc gaaggggttt gacatgaatc cgcaggacaa atgttggcag
    26341 gttcaccgcc atcttgccga acatgccgac caacggctga cactcgtccg caacgcgccc
    26401 aaacatatcc tgcttgccgg ggcggatgcg gacatcagcc gcagcctgct ggcgaaacga
    26461 tatccgcagg cggtatttga agaatacgat tcccgtgcgg attttttggc ggctgccgca
    26521 gccgtgcgca agggcggttt ttggcaaagg tttacgggta agggcgtggt gcaacactgc
    26581 caatccccga ccgcgccgct gcccgaagcg tgtgccgata tgttgtggtc gaatctcgga
    26641 ctgttggcgg cggaacaaat ccttcctgtg ctgcacaact gggcgcgcgc gctggagacg
    26701 gacgggctgc tgtttttcac ctgcttcggg cgagatacct tggcggaact gaaatgccgt
    26761 ctgaaagaaa atggcattga aagccgcagc gcgcttttcc ccgatatgca cgacttgggc
    26821 gatatgcttg ctgaaaacgg gttttacgac cccgttaccg atacggcgaa gctggtgttg
    26881 gattacaaaa aggcggaaac gttttgggcg gatatggaca cgctgggcgt ttggcgggcg
    26941 atgtcgtgga acgatgaaaa cgccgcgcgt tcgtgtgtcg ggacaatatt tgaacgggaa
    27001 ggcggtttga gtattacgct ggaaacagtg tacggacacg ccgttaaaaa actgatgctg
    27061 ccgcaagggg agaacgtggt gcagtttttt ccgaagagat gatgtgcaga tgccgtctga
    27121 agctgtttcc aagtttcaga cggcatctgt ctgtgaaaac cgatagaaat aaaggaaatg
    27181 ccgatgtatg ccgatgccgg agacgtatat tgcgtctata acttcagact gaagcagtac
    27241 actgcctgcc aggttacccg agttgaagaa cacggtggga aaaaagcata tgcaaccctg
    27301 ctggctttgg actggcaggg caacaaaccg cttggggcgg cggagctggc ggatttgaaa
    27361 ccgctttaca aagactttat gtattgggaa cgcggtctgc acatgtataa ggcaagtgcc
    27421 gtcgtgccga cgggatatgt acgggttggg aataccgcgc cgctggtcgg cgaagacacg
    27481 caacggtatg cctctttttg gggcgacggc tacgacgtgt accgtcagtt gagatggcag
    27541 cagatacccg aaaaacagag aaaggcattc aaaaaagccg ccaaaagcaa aaagaccgtg
    27601 atgtttgccg gacgggaata cggcatatcc aaacagaatt tgagcgatgt ttgggatgat
    27661 tttgaagacg cgatggaact gaaggcgttt ccctgcctgt cttcgctgtt tctgaccaaa
    27721 tggcataaaa atctatatga tag
//
LOCUS       DAWGNT010000006        27033 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.006, whole genome shotgun sequence.
ACCESSION   DAWGNT010000006 DAWGNT010000000
VERSION     DAWGNT010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 27033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27033
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.006"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(142..232)
                     /locus_tag="WHR98_000165"
     tRNA            complement(142..232)
                     /locus_tag="WHR98_000165"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(196..198),aa:Ser,seq:gga)
     gene            complement(268..354)
                     /locus_tag="WHR98_000166"
     tRNA            complement(268..354)
                     /locus_tag="WHR98_000166"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(318..320),aa:Leu,seq:cag)
     gene            complement(390..476)
                     /locus_tag="WHR98_000167"
     tRNA            complement(390..476)
                     /locus_tag="WHR98_000167"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(440..442),aa:Leu,seq:cag)
     gene            565..2940
                     /gene="rnr"
                     /locus_tag="WHR98_000168"
     CDS             565..2940
                     /gene="rnr"
                     /locus_tag="WHR98_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEZ2306908.1"
                     /translation="MNKNIKSLNLREKDPFLSREKQRYEHPLPSREWIIELLERKGVP
                     SKIESLARELSITEDEYVFFERRLKAMARDGQVLINRRGAVCAADKLDLVKCRVEAHK
                     DGFGFAVPLTPAKDGDFVLYERQMRGIMHGDIVTVRPAGMDRRGRREGTVLDIVERSQ
                     SKVVGRFYMDRGVAILEPEDKRLNQSIVLEPDGVARFKPESGQVIVGEIEVYPEQNRP
                     AVAKIIEVLGDYADSGMEIEIAVRKHHLPHQFSEACAKAVKKIPDHVRKSDLKGRVDL
                     RDLPLVTIDGETARDFDDAVFAEKIGRNYRLVVAIADVSHYVRPDDAIDTDAQERSTS
                     VYFPRRVIPMLPENLSNGICSLNPNVERLCMVCDMVITYAGNIKEYRFYPAVMRSHAR
                     LTYNQVWKWLSGGIGHPFKTQIDTLYKLFKILQKKRFERGAVEFDSIETQMLFDDNGK
                     IEKIVPVVRNDAHKLIEECMLAANVCAADFLLKNKHTALFRNHLGPTPEKLATLREQL
                     GLLGLQLGGGDNPSPKDYAALVEQFKGRPDAELLQVMMLRSMQQAVYEPHCDGHFGLA
                     YEAYAHFTSPIRRYPDLTVHRAIKAVLNQQTYTPKKSWQALGVHTSFCERRADDASRD
                     VENWLKTYYMRDKVGEVFEGKISGMTSFGIFVTLDGIHIDGLVHISDLGEDYFNFRPE
                     IMAIEGERSGIRFNMGDRVAVRVARADLDDGKIDFVLIAEGSGRGRKVKSSASAKPAG
                     TAGKGKPKTAAEKKTARGGKVRGRGASAAAESGKKAKKPVPIKVKKRKGKS"
     gene            complement(3278..4741)
                     /gene="guaB"
                     /locus_tag="WHR98_000169"
     CDS             complement(3278..4741)
                     /gene="guaB"
                     /locus_tag="WHR98_000169"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003767939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEZ2306909.1"
                     /translation="MRIVEKAYTFDDVLLVPAHSTVLPRDVKLQTKLTREITLNLPLL
                     SAAMDTVTEARLAISMAQEGGIGIIHKNMPPEMQARAVSKVKRHESGVVKDPVTVAPT
                     TLIREVLEMRAQRKRKMSGLPVVENGKVVGIVTNRDLRFENRVDLPVSAIMTPRERLV
                     TVPEGTSIDEARELMHTHKVERVLVLNEKDELKGLITVKDILKTTEFPNANKDSEGRL
                     RVGAAVGTGGDTEERVKALVEAGVDVIVVDTAHGHSQGVIDRVKWVKETYPHIQVIGG
                     NIATAKAALDLVAAGADAVKVGIGPGSICTTRIVAGVGVPQLTAIHNVAEALKGTGVP
                     LIADGGIRFSGDIAKALAAGAYSVMLGGMFAGTEEAPGEIELYQGRSYKSYRGMGSLG
                     AMSQGSADRYFQDKTDSADKYVPEGIEGRVPYKGPIVNIIHQLTGGLRSSMGYLGCAN
                     IAEMHEKAEFVEITSAGMSESHVHDVQITKEAPNYHR"
     gene            complement(4942..5022)
                     /locus_tag="WHR98_000170"
                     /pseudo
     CDS             complement(4942..5022)
                     /locus_tag="WHR98_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798803.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(5068..5529)
                     /locus_tag="WHR98_000171"
     CDS             complement(5068..5529)
                     /locus_tag="WHR98_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306910.1"
                     /translation="MNIIMDSTRKFGILWEENSECNGFIYGKIQIIIGENIYPKICPY
                     GYFTLNAVFNSLKSSFEEKYYAGGNNGLDFGEQLFDIDKYNSLELCNIFSIDTTYMSG
                     GGNCEIDCLVLEMGYSGEEERLFYSFDNGKNFKEIRYKKGTVESVIFQLNL"
     gene            complement(5620..8178)
                     /gene="glnD"
                     /locus_tag="WHR98_000172"
     CDS             complement(5620..8178)
                     /gene="glnD"
                     /locus_tag="WHR98_000172"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HEZ2306911.1"
                     /translation="MPANLSSALETFKQQRDAAEAHYLKANRVSVFFREYTAAVETLL
                     AALWVEHFQNSALCLMAVGGFGRGELYPCSDVDLAVVSPAPLSDGIQEQIARFVQTLW
                     DCKLMPSVKSGSVDELCESVRNDITGDTAFLEARFLFGNRQTADELAKKMNAQRNVPA
                     FVEAKLVEMEHRHAKSQGSGAVLEPNIKSCPGGLRDIHTLLWIAKAQGLATNLPDLLK
                     QRILTRAEAGMLSHGYRRLAHIRIHLHLNANRAEDRLLFDLQPQVAESMGYEGLNLRR
                     QSEELMRVFYRAIKTVKQLGGILTPMLQSRVSSTPLRVTLRIDDDYIQVNNQIAARHT
                     DIFFRRPEHIFKIVEIMQQRNDITALEPQTLRAWWGATRKINRSFYQNSENRHRFAGF
                     FRNGNGLTQTLRFLNLYGVLGRYLPAWEKIVGLLQHDLFHIYPVDDHILTVVRNVRRL
                     ALDMHSHELPYASALMQSFEKQDILYLAAFFHDIAKGRGGDHAIQGIADARQFAADHF
                     LTEEESDLLAWLVENHLLMSTVAQKEDIQDPSVLDAFCKRVQTHERLSALYLLTISDI
                     RGTNPKLWNAWRASLLESLFHAAGRYLTGNGGNPHTLFGRRRQEAADLLTRAAVPEKQ
                     QKKLWNALGSAYFARHQSREILWHAANLVHDFETPIVRSRILPKSNSFQVMVFMPNGP
                     RLFARLCRIFSRHGFDILAARAFITEHDYILDTFIVQIPSQHAPEDYPDIQSALEAEL
                     NSFIHGHTVAEISSHSRRISRRSRYMPIAPSITITPEEDYPDWYSVEITAVNRPFLLA
                     DMAEVFFAHNVSLRYAKISTLDERAEDSFTVFSLDLKNPKIQSSLKQTLLEQLS"
     gene            complement(8227..8547)
                     /locus_tag="WHR98_000173"
     CDS             complement(8227..8547)
                     /locus_tag="WHR98_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEZ2306912.1"
                     /translation="MMGNKLTPPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQC
                     GLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLNLMTNSADTRQMPS
                     ESGI"
     gene            complement(8872..9345)
                     /gene="bfr"
                     /locus_tag="WHR98_000174"
     CDS             complement(8872..9345)
                     /gene="bfr"
                     /locus_tag="WHR98_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HEZ2306913.1"
                     /translation="MKGDRLVIRELNKNLGLLLVTINQYFLHARILKNWGFEELGEHF
                     FKQSIVEMKAADDLIERILFLEGLPNLQELGKLLIGESTEEIIACDLEKEKEKHEALI
                     AAISVAEAQQDYVSRDLLEKQKDTNEEHIDWLETQQELIGKIGLPNYLQTAAQED"
     gene            complement(9373..9837)
                     /gene="bfr"
                     /locus_tag="WHR98_000175"
     CDS             complement(9373..9837)
                     /gene="bfr"
                     /locus_tag="WHR98_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HEZ2306914.1"
                     /translation="MQGNQAVVDYMNELLSGELAARDQYFIHSRLYSEWGYTKLFERL
                     NHEMEEETTHAEDFIRRILMLGGTPKMARAELNIGTDVVSCLKADLQTEYEVRDALKK
                     GIKLCEEAQDYVTRDLMVAQLKDTEEDHAHWLEQQLRLIELIGEGNYYQSQL"
     gene            complement(10300..11283)
                     /gene="lipA"
                     /locus_tag="WHR98_000176"
     CDS             complement(10300..11283)
                     /gene="lipA"
                     /locus_tag="WHR98_000176"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HEZ2306915.1"
                     /translation="MSEIKTDDPKRGIKLRGADKTARIPIKVVPLQEKLKKPEWIRAK
                     LPSRKFFEIKDILREQKMHTVCEEASCPNIGECFSKGTATFMIMGDICTRRCPFCDVG
                     HGRPNMLDPDEPKNLAESVKAMNLRYVVITSVDRDDLRDGGAQHFADCIKAIRETSPN
                     TKIEILVPDFRGRLDIALKILAETPPDVMNHNLETHPSLYRKARPGANYQHSLDLLKR
                     YKEMMPHIPTKSGIMVGLGETDEDVREIMRDMRAHNIEMITIGQYLQPSDGHLPVLRY
                     VTPEQFKIFEKEAYELGFSNAAIGAMVRSSYHADEQAAEALRESHGGCGHH"
     gene            complement(11276..11899)
                     /gene="lipB"
                     /locus_tag="WHR98_000177"
     CDS             complement(11276..11899)
                     /gene="lipB"
                     /locus_tag="WHR98_000177"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HEZ2306916.1"
                     /translation="MKIIHKGLVEYLPTFEAMKTFNAGRNADTEDELWVVEHPPVFTQ
                     GLAGKPEHLLIRDDIPVVQIDRGGQITYHGPGQLVVYTMIDFKRRKTSVRNIVSALEN
                     SIIATLAEYGIEAAADPKRPGVYVGERKIASLGLRIKNGSVYHGLALNVNMDLSPFTH
                     INPCGYAGMEMTQIADFVQPCPTPDEVAAKLTAHLETQFTPKADNNE"
     gene            complement(11901..12176)
                     /locus_tag="WHR98_000178"
     CDS             complement(11901..12176)
                     /locus_tag="WHR98_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HEZ2306917.1"
                     /translation="MTEQENKTSLIEFPCTFPLKVMGAVHPEFEQAVLDTVRLHAPDT
                     QAHHITTRPSSKGNYTGATVQVKVENQEQLDNIYRALTSHELVKVVL"
     gene            12361..13431
                     /locus_tag="WHR98_000179"
     CDS             12361..13431
                     /locus_tag="WHR98_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEZ2306918.1"
                     /translation="MYRRKGRGIKPWMGAGAAFAALVWLVFALGDTLTPFAVAAVLAY
                     VLDPLVEWLQKKGLNRASASMSVMVFSLILLFALLLIIVPMLVGQFNNLASRLPQLIG
                     FMQNTLLPWLKNTIGGYVEIDQASIIAWLQAHTGELSNALKAWFPVLMRQGGNIVSSI
                     GNLLLLPLLLYYFLLDWQRWSCGIAKLVPRRFAGAYTRITGNLNEVLGEFLRGQLLVM
                     LIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVPYLGAFTGLLLATVAALLQFGSWNGI
                     LSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPLAA
                     VTLVLLREGVQKYFAGSFYRGR"
     gene            complement(13537..14484)
                     /locus_tag="WHR98_000180"
     CDS             complement(13537..14484)
                     /locus_tag="WHR98_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraslipin"
                     /protein_id="HEZ2306919.1"
                     /translation="MEFFIILLAAVAVFGFKSFVVIPQQEVHVVERLGRFHRALTAGL
                     NILIPFIDRVAYRHSLKEIPLDVPSQVCITRDNTQLTVDGIIYFQVTDPKLASYGSSN
                     YIMAITQLAQTTLRSVIGRMELDKTFEERDEINSTVVAALDEAAGAWGVKVLRYEIKD
                     LVPPQEILRSMQAQITAEREKRARIAESEGRKIEQINLASGQREAEIQQSEGEAQAAV
                     NASNAEKIARINRAKGEAESLRLVAEANAEAIRQIAAALQTQGGADAVNLKIAEQYVA
                     AFNNLAKESNTLIMPANVADIGSLISAGMKIIDSSKTAK"
     gene            complement(14499..14906)
                     /locus_tag="WHR98_000181"
     CDS             complement(14499..14906)
                     /locus_tag="WHR98_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HEZ2306920.1"
                     /translation="MTVWFVAAVAVLIIELLTGTVYLLVVSAALAGSGIAYGLTGSTP
                     AAVLTAALLSALGIWFVHAKTAVRKVETDSYQDLDAGQYVEILRHTGGNRYEVFYRGT
                     HWQAQNTGQEELEPGTRALIVRKEGNLLIIAKP"
     gene            14987..15646
                     /gene="ung"
                     /locus_tag="WHR98_000182"
     CDS             14987..15646
                     /gene="ung"
                     /locus_tag="WHR98_000182"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEZ2306921.1"
                     /translation="MDTWHDALGGEKQQPYFQEILNAVRQERLSGQIIYPPAADVFNA
                     FRLTAFDRVKAVILGQDPYHGAGQAHGLAFSVRQGIRIPPSLLNIYKELETDIEGFSI
                     PAHGCLTAWAEQGVLLLNTVLTVRAGQAHSHALLGWERFTDTVIRQLATHRKHLVFML
                     WGGYAQQKRKLIDSQNHLILTAPHPSPLSAYRGFFGCRHFSQANSYLSRHGIDPINWK
                     L"
     gene            15643..15852
                     /locus_tag="WHR98_000183"
     CDS             15643..15852
                     /locus_tag="WHR98_000183"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HEZ2306922.1"
                     /translation="MNADIAVAAGVLKSRLICNFHLLGKTLWQSKKNQLYASLWAGCD
                     ELRGGMDASLYKELCAYAIVFKICF"
     gene            15749..16666
                     /locus_tag="WHR98_000184"
     CDS             15749..16666
                     /locus_tag="WHR98_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HEZ2306923.1"
                     /translation="MHHFGRAATSCAAVWMRAFIKNYVLTLLFLKYVSDKHKYGGGMI
                     ELHADTTFDDIVKLKNTADIGDRLNKIIAQIAEANDLKGVIDVADFNDEDKLGKGKEM
                     IDRLSRLVGIFEKLNLSSNQAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRI
                     MAKIIGISADCPSSTSVYDPTCGSGSLLLKAAAQAGSQISLYGQEKDVATASLARMNM
                     ILHNNETAEINTGNTLSDSSFRDENDGLKTFDFAVANSPYPARKKRRLRLFAASAQKP
                     ETKRQRCDYSSARCAVSRQCRSAYSHGIA"
     gene            16575..16910
                     /locus_tag="WHR98_000185"
     CDS             16575..16910
                     /locus_tag="WHR98_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEZ2306924.1"
                     /translation="MKPSGKGAIILPHGVLFRGNAEARIRTELLNLDLIKGIIGLPAN
                     LFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGIKDGNKNRLREQDIHKIIDTFT
                     NLVTAVWCI"
     gene            16898..17212
                     /locus_tag="WHR98_000186"
     CDS             16898..17212
                     /locus_tag="WHR98_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit M"
                     /protein_id="HEZ2306925.1"
                     /translation="MVHLSEIAAQDYNLNLPRYIDSGEVEDLQNLAAYLYGGIPAHDM
                     DALEAYWQVLGRMKNELFAEHDGRFTTIQRNRLQIFPTLNSLKSCGIGVEFRANLVQP
                     QI"
     gene            17254..18198
                     /locus_tag="WHR98_000187"
     CDS             17254..18198
                     /locus_tag="WHR98_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEZ2306926.1"
                     /translation="MAHPDYAAFKAGHLAKFAAWHTQNDLAAIQPGRLIRKWSESLLD
                     AFKPGSLIEEYDFYQILTDYWAETLQDDVYLIAQDGWKAVKNLAEITKESDEDANLTV
                     VFEETETGKKGKAKTKRISKKYRSEVIAPELVARRYFSDGIAKLEEKQSELERLSQEL
                     ENHIEEHGGEEGALNDVLDAKGKLSAKLLKTALEESGIEEGERAVLQTTQTLMTQEKA
                     AKDAVKTQIEALNLAVFKQFGRLSEAEIKQLAVQDKWLADLQSRIENRLENSIQQLIS
                     RLNTLEDRYRSPMAELAREVEKWQSKVNAHLENMGFGG"
     gene            18340..18474
                     /locus_tag="WHR98_000188"
     CDS             18340..18474
                     /locus_tag="WHR98_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF45 domain-containing protein"
                     /protein_id="HEZ2306927.1"
                     /translation="MTHLLERHRNARFMAHMDNFLPNWQSIKQQLNALELFAQIYNLT
                     "
     gene            18579..19256
                     /locus_tag="WHR98_000189"
     CDS             18579..19256
                     /locus_tag="WHR98_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEZ2306928.1"
                     /translation="MSAPVILSAAATKGGVGKTTLIANVSAVLADIGLRVLMIDCDVQ
                     PSLSKYYPISHRAPNGIVELLLGENTEEIIRSTISNTVFPNLDIVISNNISAFVETEV
                     TSRPDRAFLLRSKLHSQYIQNNYDVVLIDTQGAVGPLLDTAAFAATCLLCPIMPEVLS
                     AREFLTGTQELLKRLQKGEAMRIPMPQLRAIIYAQDRTNDAKFIASSIKDFFSNTLDD
                     RRKWRLL"
     gene            19253..19549
                     /locus_tag="WHR98_000190"
     CDS             19253..19549
                     /locus_tag="WHR98_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306929.1"
                     /translation="MKFDANNACTDGIYRPENVFQQQDVREILLGQYSYAGSQILRNI
                     VRSLYKGVPVELYQVSQLDQKHYAIFEAILAHYRKYRESEQLRQIVCEMNRKAG"
     gene            19563..19874
                     /locus_tag="WHR98_000191"
     CDS             19563..19874
                     /locus_tag="WHR98_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306930.1"
                     /translation="MTIMKPEQEDLQAAFEFVGMMTAVARHELNPLEKDEFDDLRFLE
                     DEDKAKVLDALCEKFNNCDLDWLMIALAHLLSPNRGVIDQDSDILTINPNLLGATDKS
                     S"
     gene            20004..20471
                     /locus_tag="WHR98_000192"
     CDS             20004..20471
                     /locus_tag="WHR98_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306931.1"
                     /translation="MQYLNEKTLEIRILETDGLYGCDVFDTEGKPLAGVIPEYKSQVE
                     AVAAALDIPGVGLFTDTDQRSKQKLVAVTDALALKYGLNFKNHGGVYRKHDNSHACLN
                     KNGRKGFVLFFTANDKFLTLQGSTCINPEIHYQFDIYVDNDFIVEKVSMLIGS"
     gene            20817..21095
                     /locus_tag="WHR98_000193"
     CDS             20817..21095
                     /locus_tag="WHR98_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HEZ2306932.1"
                     /translation="MTATYADCRFEARITSDTRALLKHAAELQGRSMSEFVISAAREA
                     AQKAVADAEILMLSERDQLQFAQALLNPSKPNGALSKALKKHDELFGR"
     gene            21097..21588
                     /locus_tag="WHR98_000194"
     CDS             21097..21588
                     /locus_tag="WHR98_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEZ2306933.1"
                     /translation="MPLPDFRIRLLDAADDRNTFECPSEPLNRYLQKQVSQDVKRKVA
                     TCFVAVTSDGQILGYYTLAATGVALSNIPAGFRKKLPRYPTVPAVLMGRLAVDGKYGG
                     FGLGSLLLADALKRISKAEIAAYALIVEAKDEAAIGFYRHFGFTSFEDATKHLFFPLA
                     NLR"
     gene            21849..24167
                     /locus_tag="WHR98_000195"
     CDS             21849..24167
                     /locus_tag="WHR98_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEZ2306934.1"
                     /translation="MPEESPETELLDSDIPLTQFLAEFGDSLFNAVTEQNQPVYQGQT
                     YPLLEEVLDNLERPLFAAQREVVRAVLQQLVVEDKPAAIINAEMGTGKTMMSIAAAAA
                     AHQAGLHRTLVLSPPHLVYKWRREILKTVPNARVWILNGADTLAKLLQIRALDRTPEV
                     PEFFVMGRVRMRMDYHWRPSYAVRRRWIPSEGASEGFAVSEYYCPKCGCEILDEENKP
                     YNTEGGVKNALAKNRRFCKGNHHGKPCKEPLWTLCRKEQSEDGVVSTVYDRVLKTMTT
                     LPGIGPKTAAKIIGMYGEQYLAEILENNIQAFSNLMDENGEFLFDDRQAARIDRDLGK
                     AEFSLGRGGYQPTEFIKRYLPKNFFGLLVVDEGHEYKNYGTAQGQAMGVLARCCNKIL
                     CLTGTLMGGYAEDLFFLLWRLWPQMMIEDGFSYNKGNTLGSASMAFMRKHGVLKDIVR
                     HLGTEYSNGAFSSSKAERNSVRTAKAPGFSPLGIMRYVLPITVFLKLCDLGEGVLPGY
                     KEVFRPVEMTEDQQAVYKNMESILRQHLKVALRNRDNTLTGVVMSALLSWPDCCYKPQ
                     DVYWRRQNKIFFHTEPQFDEEEISPKEADMLEVVKDSLAKGRKCLVYTVYTDTRDTTG
                     RLKEIFKRHGIKAAVMKATVKADQREDWVEDQLASGVQVVICNPELVKTGLDLLAFPT
                     IYFLQTGYNVYTLMQAARRSWRIGQKEDVEVYFAGYSDTAQQICLELMGQKVAVTQST
                     SGDMPDSGLDILNQAEDSVEVQLAKRLVDRQD"
     gene            25524..26645
                     /locus_tag="WHR98_000196"
     CDS             25524..26645
                     /locus_tag="WHR98_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methylase"
                     /protein_id="HEZ2306935.1"
                     /translation="METQNHLMHPRVAHNHRDNGYFPTDQATLARIAACLDIPASAGG
                     LLRIFDPCCGTGEALASLASTLQSEKISCHTYGIELEKNRAQEAMSRLTSVIKSDVEN
                     CTMQGSAVGLLFLNPPYGFAAKDNLSNQRTKRLEELFFARTFGTLQPGGVLVMIVPEA
                     ALTEHLTGEIATHCTDVRMIRAAVDTYKQLVIFGIRPKNKASISKKQADAQQRLLLAF
                     ENAPETLPTGMPAYCVPIAPNKVFRPKSFKLEQDILERELGQQQSRTLWPSFSQHFGT
                     NAVIAEKRRPLCALGQWHAALALAAGQVNGVVTSTNGRKLLVKGSTHKTKVETKSEEY
                     DNKDRLVVTITSTDRFSPSIRTIDLTEGSPDFGRVLTIK"
     gene            26727..>27033
                     /locus_tag="WHR98_000197"
     CDS             26727..>27033
                     /locus_tag="WHR98_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306936.1"
                     /translation="MEQLDLAAMAACDTPYLFRLGRVSMTATVDNWAKEHLPAQLYDN
                     DLYAQILLEAHRHGIWGDIPPEDAKLNQLALKPGEEGRIMSSYKIGDQKIWVITEWDR
                     "
BASE COUNT         6596 a         6360 c         7029 g         7048 t
ORIGIN      
        1 taccgcaaaa cataccacaa aaaacggtaa cggatagttg taagcggttg atgacgatta
       61 tagacaataa cgggttttcc caatgaaatt attgtttgaa taataaaaaa tcccaaaccg
      121 taaaagtttg ggatttgtat ttggcagaga ggaagggatt cgaaccctcg atacgctatt
      181 cacgtataca cgctttccag gcgtgcgact taaaccactc atccacctct ctaatggcgg
      241 aaattatccc aatcggaata atttatttgg tgcccgggag aagactcgaa cttccacacc
      301 cgtgaggata ccagcacctg aagctggcgc gtctaccaat tccgccaccc gggcaatcta
      361 aatattgaaa taaagcaaag catttgattt ggtgcccggg agaagactcg aacttccaca
      421 cccgtgagga tactagcacc tgaagctagc gcgtctacca attccgccac ccgggctttg
      481 ctttatttgc tgttttgcgg tacagtgtcc tgccgcaaag aagtcgctat tatatagttc
      541 ataaagagaa tgtcaacagt ccaaatgaat aaaaatatta aatctttaaa tttacgggaa
      601 aaagacccgt ttttaagtcg tgaaaaacag cgttatgaac atcctttgcc cagtcgggaa
      661 tggataatcg aattgttgga gcgcaaaggt gtgccttcaa aaatcgaatc gcttgcgcgc
      721 gagctgtcga ttacggaaga cgagtatgtc tttttcgaac gccgtctgaa ggcgatggcg
      781 cgggacggtc aggttttaat caaccgccgg ggcgcggttt gcgcggcgga caaattggat
      841 ttggtcaaat gccgtgtcga ggcgcacaaa gacggtttcg gttttgccgt gccgctcacg
      901 cccgccaaag acggtgattt tgttttgtat gaacgccaga tgcgcggcat tatgcacggc
      961 gatattgtca ctgttcgtcc tgccggcatg gaccgtaggg gccgccgcga agggacagtt
     1021 ctggatattg tcgaacgctc gcaaagcaaa gtggtcggcc gtttctatat ggataggggc
     1081 gtggcgattt tggagccgga agacaagcgt ctgaaccaaa gcatcgtatt ggaaccggac
     1141 ggcgtggcgc gtttcaaacc tgaatccggt caggtcatcg tcggcgaaat tgaggtttat
     1201 cctgagcaaa accggccggc agtggcaaaa atcatcgaag ttttgggcga ttatgccgac
     1261 agcggcatgg agattgaaat tgccgtgcgc aagcatcatt tgccgcacca attcagtgaa
     1321 gcgtgtgcca aagccgtgaa aaaaattccc gaccatgtac gcaaaagcga tttgaaaggc
     1381 cgcgtcgatt tgcgcgacct gcctttggta acgattgacg gcgaaacggc tcgagatttt
     1441 gacgatgcgg tgtttgccga aaaaatcgga cgcaattacc gtctggtcgt ggcgattgcc
     1501 gatgtcagcc attatgtccg ccccgatgac gctatcgaca cggacgctca ggaacgcagc
     1561 accagtgttt acttcccgcg ccgcgtgatt cccatgttgc cggaaaacct gtccaacggc
     1621 atctgctcgc tcaatcctaa tgtcgagcgt ttgtgtatgg tgtgcgatat ggttatcact
     1681 tacgcgggca atattaaaga ataccgcttc taccccgccg tgatgcgctc tcatgcccgc
     1741 ctgacctaca accaagtttg gaaatggctt tcaggcggca tcgggcatcc gttcaaaacc
     1801 caaatcgaca cgctttacaa actcttcaaa atccttcaga aaaagcgttt cgaacgcggg
     1861 gcggtggagt ttgacagcat cgaaacccaa atgcttttcg acgacaacgg taaaattgaa
     1921 aaaatcgtcc ccgttgtccg caacgatgcc cacaagctga ttgaagaatg tatgctggcg
     1981 gcgaatgttt gcgcggcgga ttttctgttg aaaaacaagc atacggcttt gttccgcaac
     2041 catttgggcc ccacgcccga aaaactcgcc accctgcgcg agcagctcgg tctgttgggg
     2101 cttcaacttg gcggcggcga caacccgtcg ccgaaagact atgccgcgct tgtcgaacaa
     2161 ttcaaaggca gacctgatgc cgaattgctg caagtcatga tgttgcgctc catgcagcag
     2221 gcggtttacg aaccgcattg cgacggacac tttggtcttg cctacgaagc atacgcccac
     2281 ttcacctcgc ccatccgccg ctatcccgac ctgaccgtac accgcgccat caaagccgtg
     2341 ttgaatcagc aaacctacac gccaaaaaaa agctggcagg ctttgggcgt gcatacctcg
     2401 ttctgtgagc gccgtgccga cgacgccagc cgcgacgtgg aaaactggct gaaaacctat
     2461 tatatgcgcg ataaggtcgg cgaagtattc gaaggtaaaa tctccggcat gaccagtttt
     2521 ggtatctttg taacactgga cggcatccac attgacggct tggtgcatat cagcgatttg
     2581 ggcgaagact atttcaactt ccgccccgaa atcatggcaa tcgaaggcga acgcagcggc
     2641 atccgtttca acatggggga cagggttgcc gtccgggtcg cccgtgccga tttggatgat
     2701 ggaaaaatcg attttgtcct gattgccgag gggagcggca gggggcggaa agttaaatca
     2761 tccgcgtctg ccaaaccggc agggacggcg gggaaaggga aaccgaaaac cgccgccgag
     2821 aaaaaaacag cccgaggcgg caaagtaagg ggaaggggcg cgtctgccgc cgcagaatcg
     2881 gggaaaaagg caaagaaacc ggttccgatt aaggtaaaaa aacggaaagg caaatcataa
     2941 tgctgacggg gtggcttggg gagggcgggg catactttcc cgaagccgcc gcccgatttt
     3001 ttgatatggc ggccggcgca tcatttcagg ccaatcgaaa cgcccgtatt gaaagattgc
     3061 gtttatttcc accgccgttt taaaggccgg cggtattcgg cagacggggc gcaaacggcg
     3121 ttcagacggc attttcattc tttcggcgtg tccgtccgaa ttgctttgcc cgtccgcgca
     3181 atcagcccgt gcggcttacc ttgaacggac aaaaaatgcc gtctgaaacc tgaaaacagg
     3241 gcttcagacg gcattttgtc ctgaaaggct gttcaaatca gcggtggtag ttcggtgctt
     3301 ctttagtgat ttgaacgtcg tgaacgtgcg attcgctcat acctgcggaa gtgatttcca
     3361 caaattcggc tttttcgtgc atttcggcaa tattggcgca acccaagtaa cccatactgg
     3421 aacgcagacc gccggtcagc tggtggatga tgttcacaat cgggcctttg taaggaacgc
     3481 ggccttcgat gccttcgggg acgtatttgt ctgcgctgtc ggttttgtct tggaagtagc
     3541 ggtcggcaga accttggctc atcgcgccca aggaacccat accgcgatag gatttgtacg
     3601 agcggccttg gtagagttcg atttcgcccg gcgcttcttc cgtgcctgca aacataccgc
     3661 cgagcatgac gctgtacgcg cctgcggcga gggctttggc gatgtcgccg gagaagcgga
     3721 tgccgccatc ggcaatcagc ggaacgcccg tgcctttgag ggcttcggca acgttgtgaa
     3781 tggcggtcag ttgcggcacg ccgacacctg ccacgatacg ggtggtgcaa atcgatcccg
     3841 gaccgatacc gactttgacg gcatccgcgc cggcggcgac caaatccaat gcggctttgg
     3901 cagtggcgat gttgccgccg atgacttgga tgtgtggata ggtttctttc acccatttca
     3961 cgcggtcgat cacgccttgg ctgtgcccgt gggcggtatc gacgacaatc acgtccacgc
     4021 cggcctcaac caaggctttg acgcgctctt cggtgtcgcc gccggtgccg actgccgcac
     4081 cgacgcgcag acggccttcg gagtctttgt tggcattggg aaactcggtg gtttttaaaa
     4141 tatctttgac ggtaatcaga cctttgagtt cgtctttttc gttcagaacc aaaacgcgtt
     4201 cgactttgtg cgtgtgcatc agttcgcgcg cttcgtctat gcttgtgcct tcggggacgg
     4261 taaccagacg ttcgcgcggg gtcataatgg cggaaacggg caaatcgacg cggttttcaa
     4321 aacgcaggtc gcggttggtt acgatgccga cgactttgcc gttttcaacg acgggcaggc
     4381 cggacatttt gcgtttgcgc tgcgcgcgca tttccaatac ttcgcggatg agcgtcgtcg
     4441 gcgcaacggt tacggggtct ttgaccacgc cgctttcgtg gcgtttcact ttggaaacgg
     4501 cgcgcgcctg catttcgggc ggcatatttt tatggatgat gccgatgccg ccttcctgtg
     4561 ccatcgaaat ggcgaggcgc gcctcggtaa cggtgtccat cgcggcggaa agcaggggga
     4621 ggttgagcgt gatttcgcgg gtgagcttgg tttgaagttt aacgtctcgc ggcagcacgg
     4681 tcgaatgtgc gggaaccaac aaaacatcgt cgaaagtata ggctttttct acgatacgca
     4741 taatgctcgg tctttcagtt tgtgcaagat gcacggcatt atagcacgtt accggcggct
     4801 tgacagttta tcaggtttaa ttttggtccc ctttgaatag cccggttttc ctttgccgac
     4861 cactgttgct cccgttcttt caatttcagg aaaagctttt ttctaatttt tggtaagtgg
     4921 ctcagttatt gaagccctat atcgggcggt aacttccagc acaaaaaaac ggagtagttc
     4981 tttatttatt ttttccttta attttcagta tattatctta atatttcgag ggtaacatat
     5041 ctgctaatct agttacagcc ccatatatta tagattcaat tgaaaaataa cagattcaac
     5101 tgtacctttc ttatacctga tttctttaaa gtttttccca ttgtcaaaac tataaaaaag
     5161 tctctcttcc tcaccagaat atcccatttc taatactaaa caatctattt cacaattacc
     5221 ccctccactc atatatgtag tatcaataga aaatatattg cataattcca gagaattata
     5281 tttatctata tcaaatagtt gctctccaaa atctaaacca ttgtttccac ctgcataata
     5341 cttctcttca aaggatgact tcaaactatt aaaaactgca tttagcgtaa aatatccata
     5401 tgggcatatc ttaggatata tattctctcc tattattatc tgaatttttc cataaataaa
     5461 accattacat tcagagtttt cttcccataa aatcccaaat tttcttgttg agtccataat
     5521 aatattcata taaatcctta tattaataaa ttatttacaa tatcccccgc tttcagacgg
     5581 catacggcgt ggcggcggaa tgccgtctga aggcgggcgt tatgataatt gttccagcag
     5641 cgtctgcttc aatgaggact ggatttttgg gtttttcagg tctaggctaa aaacggtaaa
     5701 actgtcttcg gcgcgttcat ccagtgtgga gattttggca tagcgcaggc tgacgttgtg
     5761 ggcgaaaaag acttccgcca tatcggcgag caggaagggg cggttgacgg cggtgatttc
     5821 gacggagtac caatcggggt agtcttcttc gggggtgatg gtgatgcttg gcgcgatcgg
     5881 catatagcgg ctgcggcggc tgatgcggcg gctatggctg gagatttcgg caacggtgtg
     5941 tccgtggata aagctgttga gttcggcttc gagcgcgctt tggatgtcgg ggtagtcttc
     6001 gggagcgtgc tgcgagggga tttgcacgat gaaggtgtcg aggatgtagt cgtgttcggt
     6061 gataaaggcg cgggcggcga ggatatcgaa gccgtggcgg ctgaaaatgc ggcagaggcg
     6121 ggcgaacagg cgcgggccgt tgggcatgaa aaccatgact tgaaagctgt tgcttttggg
     6181 caggatgcgg ctgcggacga tgggggtttc aaagtcgtgg actaggttgg cggcgtgcca
     6241 caggatttcg cgggactggt ggcgggcgaa gtaggcggaa ccgagcgcgt tccatagttt
     6301 tttctgctgt ttttcgggga cggcggcgcg ggtgagtaag tcggcggctt cctgccggcg
     6361 gcggccgaag agggtgtgcg ggttgccgcc gttgcctgta aggtagcgtc cggcggcatg
     6421 gaagaggctt tccagcaggc tggcgcgcca tgcgttccac agcttgggat tggtgccgcg
     6481 tatgtcggaa atggtcagaa ggtagagcgc gctgaggcgt tcgtgggttt ggacgcgttt
     6541 gcagaaggca tcgagtacgc tggggtcttg gatgtcttct ttttgggcga cggtggacat
     6601 aagaagatgg ttttcaacca gccaggcgag caggtcgctt tcttcttcgg tcaggaagtg
     6661 gtcggcggca aattggcgcg cgtctgcgat gccttgtatg gcatggtcgc cgccgcgtcc
     6721 tttggcgatg tcatggaaaa aggcggcaag gtagaggatg tcttgttttt caaaggactg
     6781 catcagtgca gaggcgtagg gcagctcgtg gctgtgcata tccaaggcaa ggcggcggac
     6841 gttgcggacg acggtgagga tgtggtcgtc cacgggatag atgtggaaca ggtcgtgctg
     6901 gagcaggccg acgatttttt cccacgcggg caggtagcgt cccaatacgc cgtagaggtt
     6961 gaggaagcgc agggtttggg tcagtccgtt gccgttgcgg aaaaagccgg cgaagcggtg
     7021 gcggttttca gaattttggt agaagctgcg gttgattttg cgcgtcgcgc cccaccatgc
     7081 gcgcagggtt tgcggttcga gcgcggtaat atcgttgcgc tgctgcatga tttcgacgat
     7141 tttgaaaatg tgttcgggcc gtctgaaaaa aatatcggtg tgccgcgcgg cgatttggtt
     7201 gttgacttgg atgtagtcgt cgtcaatccg cagggtaacg cgcaacgggg tggaggaaac
     7261 gcggctttgc agcataggcg tgaggatgcc gcccagttgt ttgacggttt taatcgcgcg
     7321 gtaaaacacg cgcatcagtt cttcgctttg gcggcggagg ttcaagcctt cataacccat
     7381 gctttcggcg acttgcggct gcaaatcgaa cagcaggcgg tcttcggcgc gattggcgtt
     7441 taaatgcaga tggatgcgga tgtgggcgag gcggcggtag ccgtgcgaaa gcataccggc
     7501 ttcggcacgc gtcaaaatcc gctgtttgag caggtcgggc aggttggtcg ccaagccttg
     7561 tgctttcgct atccaaagca gggtgtggat gtcgcgcaga ccgcccggac agcttttgat
     7621 gtttggttcc aataccgccc ctgagccttg cgatttggcg tggcggtgtt ccatctccac
     7681 cagttttgcc tcgacaaacg ccggcacatt gcgctgcgcg ttcatttttt tcgccagttc
     7741 gtccgccgtt tggcggttgc caaacaaaaa cctagcctct aaaaacgctg tgtcccccgt
     7801 aatatcattg cgcacgcttt cacatagttc atcaacgctg ccgcttttta cagacggcat
     7861 cagtttgcag tcccataggg tttgaacaaa ccgggcaatc tgttcctgaa tgccgtctga
     7921 aagcggggca ggggagacaa ccgccaaatc cacatccgaa cagggataca gttcgccgcg
     7981 cccgaagccg cccaccgcca tcaggcataa cgcgctgttt tgaaaatgtt ctacccacaa
     8041 tgccgccagt aaggtttcga ctgccgctgt gtattccctg aaaaataccg acacgcggtt
     8101 ggctttcaaa taatgcgctt cggcggcatc gcgctgctgt ttgaaggttt ccagtgctga
     8161 agacaggttt gcaggcattt ttattctttc gattggcggg aaaaagggag gcggatggtt
     8221 cggcggtcaa ataccgcttt cagacggcat ttgtcgggta tcggcggaat tggtcatcag
     8281 gttcaaccgt tcctgcggcg gcagcagcaa ctgatacgcc gccacgccca aagccgccgc
     8341 cattttttcg atattcgaca gggcgatgtt ccagcgtttg cgctcgactg ccgacacata
     8401 agtcctgtcc aaaccgcatt gccgcgccaa ttcttcttgc gaccaaccct tgttcacgcg
     8461 gaaaagccgc atattgtatg ccaataccgc ccgcaaatcc tgttcgtcag gcagttcggc
     8521 aggcggggtc aatttgttgc ccatcatttg cttccagata aatggttaaa attaagcatt
     8581 tgctgttacg gattttactt cacataaaaa ccaaaaaaaa ggggtggcgg cagccacacc
     8641 caaacacaca cacatcaaga ggaaagaggt aaaatcaaga cggattggga aacagcaaac
     8701 aagtaatcta gatttcatat cggtattatc aaacaaaaac cgttatcgag tattgattca
     8761 aatcaattta gatttgattc gcaaaccggc aaagaaaaac ggcatacccg tttatacgga
     8821 tatgccgtct gatgatgcag gggactgctg tatttggcag tggtttgtgt tttagtcctc
     8881 ttgcgccgct gtttgcaggt agttcggcaa accgattttg ccgatcagtt cctgctgggt
     8941 ttcgagccag tcgatgtgtt cttcgttggt gtctttttgt ttttccaaca aatcacggct
     9001 gacataatcc tgttgcgctt ctgccacgga aattgccgca atcaatgcct catgtttttc
     9061 tttctctttt tccaaatcgc aggcgatgat ttcttcggtg gactcgccaa tcagaagctt
     9121 gcccagttct tgcaggttcg gcagaccttc gaggaacaga atgcgctcga tcaaatcgtc
     9181 ggcagctttc atttcaacga tggactgttt gaagaaatgt tcgcccagtt cttcaaagcc
     9241 ccagtttttc aaaatacggg cgtgaaggaa atattggttg atggttacca gcagcaagcc
     9301 taagtttttg tttagctcgc ggataaccag acggtcgcct ttcatacgga ctccttttat
     9361 tccgaatacg gattacagtt ggctttggta gtagttgcct tcgccaatta actcgatcag
     9421 gcgaagctgc tgttccagcc agtgggcgtg gtcttcttcg gtatctttca gttgggcaac
     9481 catcaggtcg cgcgtaacat agtcttgagc ctcttcgcac agtttgatgc cttttttcaa
     9541 cgcatcacgt acttcatatt cggtttgcag gtcggctttg aggcaggaaa ccacgtccgt
     9601 gccgatattc agttcggcgc gtgccatttt cggcgtaccg cccagcatca ggatgcggcg
     9661 gatgaagtct tcggcgtgtg tggtttcttc ttccatctcg tggttgagac gttcaaaaag
     9721 tttggtgtag ccccattcgg agtagaggcg ggagtggata aagtattggt cgcgtgccgc
     9781 cagctcgcca gacagcaatt cgttcatata atcaacaaca gcttgattgc cttgcataat
     9841 atctctcttt ccgtaacttg gttttcggta tgtctgaaca gcatctgtgt cgctattcgg
     9901 gatgcgtgca ttgtatgcaa aagctgtcgg catgacaaat tttctattta aaatacaaac
     9961 aattatcaaa agaaataggg cgtattcccc gatgccttcc aaatcagtat gctgtttctt
    10021 atcggttttt ttgctgctaa aactaagaat ccatctcatc cataaagaac atttacactt
    10081 attaaccata gcaaaaaaca aatagagcac ggttttttat caaaatttat aatgaatcgt
    10141 tctcattaac cgacagattc ttttgagatt atcggatttt gggaataaat tatgccgtct
    10201 gaggggcttt cagacggcat agacaattaa agctgattaa acaacgcggc agacagcagc
    10261 gtaggaaatt attttttact tcggaacggt attttgggtt taatgatgcc cgcaaccgcc
    10321 gtggctttcg cgtaaggctt cggcagcctg ttcgtcggcg tggtagctgg aacgtaccat
    10381 cgcgccgatg gcggcattgc tgaagcccag ttcgtatgct tctttttcaa agattttgaa
    10441 ctgctcgggc gtaacgtagc gcaggacggg caggtgtccg tctgaaggct ggaggtactg
    10501 tccgatggta atcatttcga tattgtgcgc ccgcatatcg cgcataattt cacgcacgtc
    10561 ttcgtctgtt tcgcccaagc cgaccatgat gccggatttg gtcgggatgt gcggcatcat
    10621 ttctttataa cgttttaata agtctaaaga atgttgataa ttggcaccgg gacgggcttt
    10681 tctgtacagg ctcggatggg tttctaggtt gtggttcatc acgtcgggcg gggtttcggc
    10741 aaggattttg agtgcgatgt ccaagcgtcc tcggaagtcg gggacgagga tttcgatttt
    10801 ggtgttcggg ctggtttcgc ggatggcttt gatgcagtcg gcgaaatgct gtgcgccgcc
    10861 gtcgcgcagg tcgtcgcggt cgacggaggt gatgacgacg taacgcaggt tcatggcttt
    10921 gacggattcg gcgaggtttt tcggttcgtc ggggtcgagc atattcgggc ggccgtgtcc
    10981 cacgtcgcag aacgggcagc ggcgggtgca gatgtcgccc ataatcatga aggtcgccgt
    11041 gcctttgctg aagcattcgc cgatgttggg gcaggaggct tcctcgcaaa cggtgtgcat
    11101 tttttgttcg cgcaaaatgt ctttgatttc aaagaatttg cgcgatggaa gtttggcgcg
    11161 tatccattcg ggctttttta atttttcctg aagggggacg actttgatgg ggatgcgggc
    11221 ggttttgtcc gcgcctctga gtttgatgcc gcgtttgggg tcgtcggttt tgatttcact
    11281 cattgttgtc tgctttcggt gtgaattgtg tttcaaggtg tgcggtgagt ttggcggcga
    11341 cttcgtctgg cgtggggcag ggttggacaa aatccgcgat ttgcgtcatt tccataccgg
    11401 cgtagccgca ggggttgatg tgggtaaacg ggcttaaatc catattgacg ttgagcgcaa
    11461 gcccgtgata gacggagccg tttttgatac gcagccccag tgaggcgatt ttgcgttctc
    11521 cgacataaac gccggggcgt ttggggtctg ccgccgcttc gatgccgtat tctgccaatg
    11581 tggcgatgat gctgttttca agcgcggaaa cgatgttgcg gacgctggtt ttgcgccgtt
    11641 tgaaatcaat catcgtataa acgaccaatt gcccgggccc gtgataggta atctgcccgc
    11701 cccggtcgat ttggacgacg ggaatgtcgt cgcgaatcag caggtgttcg ggttttcccg
    11761 ccagtccttg tgtgaacacg ggcgggtgtt cgacgaccca cagttcgtct tcggtgtcgg
    11821 cattccgtcc ggcattaaag gttttcatcg cttcaaaagt cggcagatat tcgaccaaac
    11881 ctttgtgtat gattttcatc tcaaagtacc actttgacca gttcgtgcga agtcagcgca
    11941 cggtagatgt tgtccaattg ttcttggttt tcaaccttta cctgtacggt ggcgccagta
    12001 tagttgcctt tgctgctcgg acgcgtggtg atgtggtgcg cctgcgtgtc gggggcgtga
    12061 aggcggacgg tgtccaatac cgcctgctcg aactcgggat gcaccgcgcc cattactttc
    12121 aatgggaagg tgcagggaaa ttcgatgagg gatgttttgt tttcttgttc ggtcatgatg
    12181 tgctgccttg tcgtgtacgg tatgccgtct gaaggcgggt ttgcctttca gacggcatcg
    12241 gatgtgcgtt attttagcct aaaccgcgat aacaggctat cgggaaggcg gaggcttttt
    12301 tgacggcgcg gcggttctgc tatactggcg cacaatatta tttttagaag ggtggttttt
    12361 atgtatcgga ggaaagggcg gggcatcaag ccgtggatgg gtgccggtgc ggcgtttgcc
    12421 gccttggtct ggctggtttt cgcgctcggc gatactttga ctccgtttgc ggttgcggcg
    12481 gtgctggcgt atgtattgga ccctttggtc gaatggttgc agaaaaaggg tttgaaccgt
    12541 gcatccgctt cgatgtctgt gatggtgttt tccttgattt tgttgtttgc attattgttg
    12601 attattgtcc ctatgctggt cgggcagttc aacaatttgg catcgcgcct gccccaatta
    12661 atcggtttta tgcagaacac gctgctgccg tggttgaaaa atacaatcgg cggatatgtg
    12721 gaaatcgatc aggcatctat tattgcgtgg cttcaggcgc atacgggcga gttgagcaac
    12781 gcgcttaagg cgtggtttcc cgttttgatg aggcagggcg gcaatattgt cagcagtatc
    12841 ggcaacctgc tgctgcttcc cctgctgctt tactatttcc tgttggattg gcagcggtgg
    12901 tcgtgcggca ttgccaaact ggttccgagg cgttttgccg gtgcttatac gcgcattaca
    12961 ggcaatttga acgaggtatt gggcgaattt ttgcgcgggc agcttctggt gatgctgatt
    13021 atgggtttgg tttacggctt ggggttggtg ctggtcgggc tggattcggg gtttgcaatc
    13081 ggtatggttg caggcatttt ggtttttgtt ccctatttgg gtgcgtttac gggattgctg
    13141 ctggcaaccg tcgccgcctt gctccagttc ggctcgtgga acggcatcct atcggtttgg
    13201 gcggtttttg ccgtaggaca gtttctcgaa agttttttca ttacgccgaa aatcgtggga
    13261 gaccgtatcg gactgtcgcc gttttgggtt atcttttcgc tgatggcgtt cgggcagctg
    13321 atgggctttg tcggaatgtt ggcaggattg cctttggccg ccgtaacctt ggtcttgctt
    13381 cgcgagggcg tgcagaaata ttttgccggc agtttttacc ggggcaggta ggcggttccg
    13441 aaacatattt gaagcggaat acaaccctgc ccgagtttaa ataaaaatgc cgtctgaacc
    13501 ccgaaaacag agcttcagac ggcatttcat cacggcttat ttggcggttt tgctgctgtc
    13561 gataattttc ataccggcag aaatcaggct gccgatgtcg gcaacattgg cgggcataat
    13621 cagcgtattg ctttctttgg caagattgtt gaacgcggcg acgtattgtt ccgcaatctt
    13681 cagattgacc gcatccgcgc cgccttgggt ttgaagggcg gcggcaattt gacggatggc
    13741 ttcggcattg gcttcggcaa caaggcgcaa ggattccgct tcacctttgg cgcggttgat
    13801 gcgggcgatt ttctcggcat ttgacgcatt gaccgcagcc tgagcctcgc cttcggattg
    13861 ttggatttcg gcttcgcgct gaccactggc aaggttgatt tgttcgattt tacgaccttc
    13921 ggattcggcg atacgggcgc gtttttcgcg ttcggcagta atttgcgcct gcattgagcg
    13981 aaggatttct tgcggcggaa ccaagtcttt aatctcataa cgcaaaacct tcacacccca
    14041 agccccggcc gcctcgtcca aagccgcaac aacagtactg ttgatttcgt cgcgttcttc
    14101 aaacgttttg tccaactcca tacgcccgat aacggaacgc agcgtcgttt gggcaagctg
    14161 ggtaattgcc atgatgtagt tgctcgaacc gtatgaggcg agtttggggt cggttacttg
    14221 gaaatagatg atgccgtcaa cagtcagctg cgtattgtcg cgcgtgatgc agacctggct
    14281 gggtacgtct aaagggattt ctttcagcga atggcggtag gcaacgcggt cgataaaggg
    14341 aatcaaaata ttcaaaccgg ccgtcagggc gcgatggaaa cgcccgagcc tttcgacaac
    14401 gtggacttcc tgttgtggga tgacaacaaa ggatttgaaa ccgaaaacgg caacggctgc
    14461 caacaagata atgaaaaatt ccataattcc tccgagtgtt aaggttttgc gatgataaga
    14521 aggttgcctt ccttgcggac gattagggcg cgcgttcctg gttcaagctc ttcttgcccc
    14581 gtattttgcg cctgccagtg cgtaccgcga taaaaaactt cgtaacggtt gccgcctgtg
    14641 tgtcggagga tttcgacata ttgtccggca tccaaatcct gatatgaatc cgtttcaact
    14701 tttctaacgg cggttttggc gtgtacgaac caaataccca gcgcggaaag cagagcggcg
    14761 gtcaagacgg cggcaggcgt gctgccggtc agcccgtaag caatgcccga acccgccaaa
    14821 gccgcgctga caaccaaaag ataaaccgtt cccgtcaata attcgatgat taagacggca
    14881 acagcggcaa caaaccatac agtcatacat ttccccacaa agcgcgtcgt ttgacaaaat
    14941 aacgcaatat cagcagtata gccgaatttg aaaggatagg gcagatatgg acacttggca
    15001 cgatgcactc ggcggcgaaa aacagcagcc gtattttcag gaaattttaa atgcagtcag
    15061 gcaggaacgt ttgtcgggac aaatcatcta tccgccggcg gcggatgtgt tcaacgcatt
    15121 ccgcctgaca gcgttcgacc gggtcaaagc cgtcattctc ggacaagatc cgtatcacgg
    15181 ggcagggcag gcgcacggtt tggcattttc cgtccggcag ggtatccgca taccgccgtc
    15241 tttactcaat atctacaaag aattggaaac cgacatcgaa ggcttttcca tacccgcgca
    15301 cggctgcctg acagcgtggg cggagcaggg cgtattactt ctgaacacgg ttttgacggt
    15361 gcgtgcagga caggcgcatt cgcacgccct tttaggctgg gaacgcttta ccgataccgt
    15421 catcaggcag cttgcgacac accgcaagca tcttgtcttt atgctgtggg gtgggtatgc
    15481 acaacaaaaa aggaaactga tagacagtca aaaccatttg atattgaccg caccgcatcc
    15541 gtctcctctg tcggcatatc gcggtttttt cggctgccgc catttttcac aggcaaacag
    15601 ctatttgagc cggcacggta tcgatccgat aaactggaag ctgtgaatgc cgatatagcc
    15661 gttgccgccg gcgtgttaaa atcgcgtttg atttgtaatt tccatttatt aggcaaaacc
    15721 ttatggcaat caaaaaaaaa tcagctttat gcatcacttt gggcgggctg cgacgagttg
    15781 cgcggcggta tggatgcgag cctttataaa gaactatgtg cttacgctat tgtttttaaa
    15841 atatgtttct gataagcata agtacggcgg cggcatgatt gagctgcacg ccgatacgac
    15901 ttttgacgac atcgtcaaac tcaaaaacac cgccgacatc ggcgaccgcc tgaataagat
    15961 catcgcccaa attgccgaag ccaacgactt aaaaggcgtg atcgacgttg ccgacttcaa
    16021 cgacgaagac aaactgggta aaggtaagga gatgatcgac cgtttgagca ggcttgtcgg
    16081 catttttgaa aagctcaacc tttcttccaa ccaagccgaa gacgacgatt tgttaggtga
    16141 tgcctacgaa tacctgatgc gccattttgc gaccgagtca ggcaaatcca aagggcagtt
    16201 ttacacgcct gccgaagtct cgcgcattat ggcgaagatt atcggaatca gcgcagattg
    16261 cccgtccagc accagcgttt atgacccgac ctgcggctcg ggttcgctgt tgctcaaagc
    16321 cgccgcccaa gccggcagcc aaatcagcct ttacggtcag gaaaaagatg tggcaaccgc
    16381 gtcccttgcc cgtatgaata tgattttgca caacaacgaa accgccgaaa tcaacaccgg
    16441 gaacactttg tccgattcgt ctttccgtga tgaaaacgac gggcttaaga ccttcgattt
    16501 tgccgttgcc aattcgcctt atcccgcccg aaaaaaacgg cgattacgcc tttttgctgc
    16561 atctgctcaa aagcctgaaa ccaagcggca aaggtgcgat tattcttccg cacggtgtgc
    16621 tgtttcgcgg caatgccgaa gcgcgtattc gcacggaatt gcttaacctt gaccttatta
    16681 aaggcattat cgggctgcct gccaacctgt tttacggcac gggcattcct gcctgcatca
    16741 tcgtcatcga caaagaacac gcccaaaccg cccaatttgc cgaagaggga acaaaccaag
    16801 ttatcagtgg cggcattaaa gacggcaaca aaaaccgtct gcgtgagcaa gacattcaca
    16861 aaatcatcga cactttcaca aacctcgtta cagccgtatg gtgcatttaa gcgaaatcgc
    16921 agcacaagat tacaacctta atctgcctcg ctatatcgac agcggagaag ttgaagacct
    16981 gcaaaatctc gccgcctatc tttatggcgg catacctgcg cacgatatgg acgcattgga
    17041 agcctattgg caagttttag gccgtatgaa aaacgagttg tttgccgaac acgatggccg
    17101 ctttaccact atacaacgga atcgattgca aatctttccc actctcaaca gcttaaaatc
    17161 ctgcgggatt ggtgtggaat ttagggctaa tctagtacag ccccaaattt aatccactat
    17221 aaaatcgaaa gcagccaaat caaagcccat atattggcgc accccgatta cgccgccttc
    17281 aaagccggac acctggcaaa gtttgccgcg tggcacactc aaaacgacct tgccgccatc
    17341 caaccgggca ggcttatccg gaaatggagc gaaagcctgc tggacgcgtt caaacccggc
    17401 agcctgattg aagaatacga tttctaccaa atcctgacgg actactgggc ggaaaccctg
    17461 caagacgatg tttatctcat cgcccaagat ggctggaagg cggttaaaaa cctggccgaa
    17521 atcaccaaag aaagcgatga agacgcgaac ctgaccgtcg tctttgagga aaccgaaacc
    17581 ggcaaaaaag gcaaagccaa aaccaagcgc atcagcaaaa aataccgcag cgaagtcatc
    17641 gcccccgagc tggttgcccg ccgctacttt tcagacggca tcgccaagct ggaagaaaaa
    17701 caaagcgagc tggaacgcct aagccaagaa ttggaaaacc acatagaaga acacggcggc
    17761 gaagagggtg cgctgaacga cgtattggat gcaaaaggca aactttccgc caaacttctg
    17821 aaaaccgcat tggaagaaag cggcatagaa gaaggcgaac gggctgtttt acaaaccacc
    17881 caaacactga tgacgcagga aaaagccgcg aaagacgcag tcaaaaccca aatcgaagcc
    17941 ctgaaccttg ccgtattcaa acaattcggc cgactttccg aagccgaaat caagcagctt
    18001 gccgttcaag acaaatggct tgccgattta caaagccgaa tcgaaaatcg cttggaaaac
    18061 agtattcagc agcttatcag ccgcttgaac acgctggaag accgctaccg cagcccgatg
    18121 gccgagcttg cccgagaagt ggaaaagtgg caaagcaaag tcaatgccca ccttgaaaat
    18181 atgggttttg gaggctgaaa tggcggcaca gacaggctat aaggcgagcg ggttttgaga
    18241 cctttgcaaa attccccaaa atcccctaaa ttcccaccaa gacatttagg ggatcgcggt
    18301 tcgggtgtcc gcaccgctta atacgtcgtc gtccacgaac tgacccattt gctcgaacgc
    18361 catcgcaacg cccgttttat ggcgcatatg gacaactttc tcccaaactg gcaaagcatc
    18421 aaacaacagc ttaatgcctt ggagttattt gcacaaatat ataatttaac ataatatata
    18481 ttatgcgaac tagaataaat atgtaaattt catatttcaa acctgttcga ttgcggatgt
    18541 ttttctcttt ataaatcaat taaatataag gaaatattat gtccgcaccc gtaatattgt
    18601 ctgcagccgc tacaaaaggt ggcgtaggta aaacaacact cattgctaat gtctctgctg
    18661 ttctcgctga tatcggactg cgtgtcttaa tgattgactg cgatgttcag ccatcattgt
    18721 caaaatacta tccaataagc caccgcgctc caaatggtat tgttgaatta cttctcggtg
    18781 aaaataccga agaaatcatc cgctcgacaa tttccaatac cgtttttccg aatttagaca
    18841 ttgttatttc caataacatt tctgcttttg tcgagactga agtaacctct cgtcccgacc
    18901 gtgccttctt gctcagaagc aaactgcatt cccaatacat acagaataac tacgatgtgg
    18961 ttttaatcga tactcagggt gcagttggtc ctctcttaga taccgcagca tttgctgcta
    19021 catgcctgct ttgcccaatt atgcccgaag ttttgagtgc ccgtgagttc ctcactggta
    19081 cgcaagaact tctaaagcgt ctgcaaaaag gtgaagcaat gcgtatcccg atgcctcaat
    19141 tacgagccat catctacgca caagatcgta ccaatgatgc gaaattcatc gcatcttcta
    19201 tcaaagattt ctttagcaat actctagatg acagacgtaa atggagattg ttatgaagtt
    19261 tgatgcaaac aatgcttgta cagatggtat ttataggcct gaaaatgtat ttcaacagca
    19321 agatgtacgc gaaattttgc ttggccagta cagttatgct ggttcccaga tattgcgaaa
    19381 tatagttaga tcgctctata agggagtacc agttgagtta taccaagttt ctcagcttga
    19441 tcaaaaacat tatgcaattt ttgaagcaat acttgctcat taccgtaaat atcgtgaaag
    19501 cgagcaattg cgacaaatag tgtgtgagat gaaccggaaa gccggctgaa aaggagatga
    19561 ctatgactat catgaaacct gagcaagaag acttgcaagc agcatttgag tttgtaggta
    19621 tgatgacagc agttgctcga catgaactca atccacttga aaaggatgag tttgatgatt
    19681 tgagattttt ggaagacgag gacaaagcaa aggttttaga tgctttgtgt gagaaattca
    19741 acaactgtga tttggattgg ttgatgattg ccttagccca tttactctct ccgaacagag
    19801 gggtaattga tcaggattcg gacattttga ccattaatcc aaatcttctt ggtgccactg
    19861 ataaaagtag ttagctttac aagagtagca ctgtattttt aatcctgctg tttgtacaga
    19921 tgcagacagt tcaatctacc cctgcaggga taccgtaccc tgccttggga acgtgtaccc
    19981 ctgcccttta taggagtaca ccaatgcaat atttaaacga aaaaacccta gaaattagaa
    20041 tcttggaaac agatggctta tacggttgcg atgtgttcga tacagaaggt aagcctctag
    20101 ccggcgtgat acctgaatat aaaagtcagg ttgaggctgt tgccgctgct ttagatatac
    20161 ctggggtcgg actatttaca gataccgatc agcggtcaaa acaaaagttg gttgcagtaa
    20221 cagatgcact ggctttgaaa tatggtttga atttcaagaa tcatggcggt gtctatcgta
    20281 agcatgacaa cagtcatgcg tgtttgaata aaaacggtag aaaagggttt gttctttttt
    20341 ttacagcaaa tgacaaattt ctgaccttac agggttctac ctgtatcaat ccagagattc
    20401 actatcagtt tgatatttat gtcgataatg atttcattgt agaaaaagtg tctatgctga
    20461 taggttctta agatatgtcc ggttattcgg atatgattta cctgctttcg agcaggtatt
    20521 tttagatgac cttcaagaaa ggctgtctaa aaatacctgt ttacaggctg acagacctta
    20581 tctgccaact gcgtactacc gttatccatt gcgcacgtcc ttaggggcgg acggctattt
    20641 tccgactttg tgcagccgca catcttttcc aaccctcgcg gggacgacga tccccacagg
    20701 ggaacgtata tctccgttac tttggagcat gtgatgtttt ctacaaaata ccctttcata
    20761 tcttgttttg tacggtaatc agccgtacaa tctagaaata atttaggagt atgttcatga
    20821 ctgccacata tgctgattgc cgttttgaag caagaatcac ttcagatacc cgtgctttac
    20881 ttaaacacgc tgcggaactt caaggacgca gtatgtccga atttgttatc agtgctgccc
    20941 gcgaggctgc ccaaaaagca gttgccgatg cggagattct gatgctgtcc gaacgtgacc
    21001 aacttcagtt tgcccaagcc ctgctcaatc cgtccaaacc gaatggggca ttgagcaaag
    21061 cattgaaaaa acatgacgaa ttgttcggga gataaaatgc cgttgccgga cttccgaatc
    21121 cgtcttcttg atgctgctga tgaccgtaat acatttgagt gcccttccga acctttaaac
    21181 cgctatctac aaaaacaggt ttcgcaagac gtaaaacgga aagtcgctac ttgttttgtc
    21241 gcggttacat ctgatggtca aattcttggc tactatacat tggctgcaac aggagttgcc
    21301 ctaagtaata tacccgccgg ttttcgtaag aagctaccca gataccctac ggttcctgct
    21361 gtgctgatgg gtcgtttggc ggtagatgga aaatatggcg gctttggact gggttcttta
    21421 cttttggccg atgcactcaa acgtatcagt aaagcagaaa tcgccgcgta tgcgttgatt
    21481 gtggaggcaa aagatgaagc tgccatcggc ttttacaggc atttcggctt tacttctttc
    21541 gaagatgcca ccaagcatct attttttcct ttagcgaatc ttcgctaatc cctttttccg
    21601 caccatacgg tagcggtttc taaccctgac ggggcaatcc cccgtcgccg gggttttgct
    21661 ccgtcctttt ttaggagcat acgatgtata accccgtttc aaaaatagac gaactcttcc
    21721 cggattttgc agagctggat caaactgtga ccgagatgca ggaacgtcag aatcaaataa
    21781 ctactgattt caactttatc atccgtcaag tggctgagac tgcccaaaaa agtacggaag
    21841 ctgccgtatt gccggaggaa tctccggaaa ctgaactgct ggattccgac atacccctga
    21901 cacagtttct tgctgagttt ggggatagtc tctttaacgc agttactgag caaaaccaac
    21961 cggtctatca gggacaaact tatcctctcc ttgaagaagt gctggataac ctggaacgtc
    22021 ctttgtttgc ggcgcagcgc gaagttgtgc gcgccgtatt acagcaattg gtggtagagg
    22081 acaaacccgc agccattatt aatgccgaaa tgggcacagg taagaccatg atgtcgattg
    22141 cagcagccgc tgccgcgcat caagcaggtt tgcaccgtac cttggtattg agtcctcctc
    22201 atttggtgta caagtggaga cgagaaatcc tcaaaacagt acccaatgcc cgcgtatgga
    22261 ttcttaacgg agccgataca ttggcaaaac tgttgcaaat ccgtgccctt gaccgcacac
    22321 ccgaagttcc ggagtttttt gtgatggggc gtgttcggat gcgtatggac taccattgga
    22381 ggccttcgta tgccgttcgt cgccgctgga taccttctga aggtgcttct gagggttttg
    22441 ccgtttctga gtattactgt cctaaatgtg gctgtgaaat cttggatgag gaaaacaagc
    22501 cttataacac tgaaggtggg gtgaaaaatg ccctggctaa aaaccgccgt ttttgcaaag
    22561 gcaatcatca tggcaaaccg tgtaaggaac cgctctggac cttgtgccgc aaggaacaga
    22621 gtgaagatgg agttgtgagc acagtgtacg atcgtgtact taaaaccatg accaccctac
    22681 ccggcatcgg tcctaaaacc gcagcaaaaa tcatcgggat gtatggtgag cagtatctgg
    22741 ctgaaatctt ggaaaacaac attcaggcgt tttccaattt gatggatgaa aacggagaat
    22801 ttttattcga cgaccgtcag gcggcgcgta tcgaccgaga cttaggtaaa gcagaattta
    22861 gcctgggacg aggcgggtat cagccgaccg agttcatcaa acgctattta ccgaagaact
    22921 ttttcgggct gttggtagta gatgaaggtc acgagtacaa gaactatggt acggctcaag
    22981 gtcaagccat gggcgttttg gcacgttgct gtaataagat cctgtgctta accggtacgc
    23041 tgatgggtgg ttatgcggaa gacctgttct ttctattgtg gcgactttgg ccgcaaatga
    23101 tgattgaaga cggtttcagt tacaacaaag ggaatacctt gggttcggca agcatggcgt
    23161 ttatgcgtaa gcatggcgtg ttgaaggata ttgtccgaca tcttggaact gaatacagta
    23221 atggcgcatt cagtagctca aaagcggagc gtaacagtgt tcgcaccgcc aaggcaccgg
    23281 gattttcccc tttgggcatc atgcgttatg ttttgcctat taccgtattt cttaagctgt
    23341 gtgatttggg cgaaggcgtt ttacctggct ataaagaagt tttccggccg gttgaaatga
    23401 ctgaagatca acaggcggtc tataaaaata tggagagtat tttgaggcag catttgaagg
    23461 tggcattaag gaatcgtgac aataccctta ccggcgttgt tatgagtgcc ttgctgtcat
    23521 ggccggattg ttgttacaaa cctcaagatg tttactggcg cagacaaaac aagatttttt
    23581 tccataccga accccagttt gatgaggaag aaatctcacc taaagaagct gacatgctgg
    23641 aagtcgttaa agacagtctg gctaaaggac gtaaatgtct ggtctatact gtttataccg
    23701 atacccgtga tacgacaggc cgtctgaaag agattttcaa acggcacggt attaaggcag
    23761 cggtaatgaa agcgacggtc aaagccgatc aacgtgaaga ctgggttgaa gaccaattgg
    23821 cttcaggcgt acaggttgtt atctgtaatc cggagctggt caaaaccggt ttggacttgt
    23881 tggcatttcc aaccatctac tttttgcaaa caggatataa cgtttatacc ctgatgcagg
    23941 ctgcccgccg ttcttggcgt attggccaga aggaagatgt ggaagtgtat ttcgccggtt
    24001 acagcgatac agcgcagcaa atttgccttg aactgatggg gcaaaaagtt gccgttactc
    24061 agtcaacctc cggtgatatg cccgattcgg gtttggacat tctgaaccag gctgaagatt
    24121 cagttgaagt tcagttggcc aaacgcttgg ttgaccgaca agattgatgc aatttttgca
    24181 tctaacccac gtttagtggg ttttttcaga cgacctcgtg ttgaggtctt ctgaaaaagc
    24241 ccgtaaggtg gaatttcaca ggctggcaga ccttatctgc ccgcgcactg ccgttaccca
    24301 ttgcgcacgt ccttcgggac ggacggctct ttttcaactt tctttaaccc tatggggata
    24361 taccgtatcc ccacagggca tcggtatatc tccctttttc atggagatac cgatgtgaaa
    24421 ttttttatat tcatcaaacc cgaccttcct tttcacaagg aaagcattga atcttggatc
    24481 aaattgctgg aagatatagg taaaacagcc ttgttggcaa tgctgccgtt gttttggctc
    24541 aattcatact ctttgaccga acatgcttcc ggcgtagtcg tattggcttt ggttgcctac
    24601 tttgtgcaag tatatgctga caaactacgg aaataccgtg attcattaaa cagaaaggat
    24661 acgtcatgct gataggcggt ctgctattta ttctcttcct ggtgcttgct ttcggctatt
    24721 ggattaccaa gcagcttgaa acttcgcgta tgtcggaaga acacaaaaac cgttaacgcg
    24781 gttcattcta tgtagctcaa gtatttatct tttacttgga taaatatgaa tcaaagattg
    24841 tcaaacagga agccaaggaa agggaaaaac catgatcatg acctacagct tactattttt
    24901 gattgccgtc atgttgtttg gcatatttaa actagtaaag tttggtgaat ctcagcaaga
    24961 cactaataca catgaccggt catgttaatt ggtattccca tcttttaaat gctttgttgc
    25021 tatttaatac caaagcattt taaatagaac gctgatacgt tcctttttag atcaatccgg
    25081 cttgaagccg tcaatcccgc tgttccgtac gtctgtacgg cagtgggatt tttcttggaa
    25141 gtcatgcggt tacgtttttt ttaatcgtgt gcgtgtattt ttaaccattt gtaggaggaa
    25201 aacctatttt tgtatcggag aagaaatgag atatagcaaa aacaaagatt atcaaatttt
    25261 tatacgtcaa ctggtatcgg gggggagaat ggatgttcct ccccaaaaac ggtcgtaagc
    25321 acagcgcatt gaagcaccta ctgaccgatc gaaaaattcc gatacccggc tcgccgggac
    25381 aggatccgcg tggattgctg aattttaaaa caatggtacg tcatatagaa cgtggcagta
    25441 ccttagattg aactttgatt taaccctgcg gggactgtcc cgcacgggca tgtccccgtt
    25501 tttttatttg aatggagacc aatatggaaa ctcaaaacca tctgatgcac ccccgtgttg
    25561 cgcataacca ccgtgacaac ggatacttcc ccaccgacca ggccacattg gcgcgtatag
    25621 ccgcttgcct tgatattccg gcatctgccg gaggtttgtt acgcatattt gatccttgct
    25681 gtggaacagg agaagccctg gcttctttag cttctacttt gcaatcggaa aaaataagtt
    25741 gtcatactta cgggattgaa ctggagaaaa accgtgctca agaggcaatg agtcgactga
    25801 ccagtgtcat caaatccgat gtagaaaact gcaccatgca gggttcagca gtcggcctcc
    25861 tgtttctgaa tcctccttac ggctttgccg ccaaagacaa tctgtctaat caaagaacca
    25921 aacggcttga agaacttttc ttcgcgcgta ccttcggtac tttgcagccc ggcggagtgt
    25981 tggtaatgat tgttccggaa gccgccctga cagagcatct aaccggcgaa atcgctaccc
    26041 actgtacgga tgtccgtatg ataagggctg cggtggatac ctacaaacag ttggttatat
    26101 tcggcatccg accgaagaac aaagcctcta tcagcaaaaa acaggcagat gcccaacaaa
    26161 ggctcctgct tgcttttgaa aatgcccctg agactttgcc gaccggtatg cctgcatact
    26221 gtgtgcctat tgcacccaat aaggtctttc gccccaaaag ctttaaattg gagcaggata
    26281 tattggaacg tgaactggga cagcagcaat cccgcacgtt atggccatca ttttctcaac
    26341 atttcggcac caatgccgtt atagccgaaa aacgccggcc tttatgtgct ctgggtcagt
    26401 ggcatgctgc tttagcatta gccgccggcc aagttaatgg cgttgtcacc tcaaccaatg
    26461 gtcgaaagct gttggttaaa ggttcaaccc ataaaaccaa agtagaaacc aaatcggaag
    26521 agtacgacaa caaggataga cttgtggtca cgattacctc aactgaccgg ttttctccaa
    26581 gcatacggac aattgatttg accgagggat cgccggactt tggccgagtc ctgacaatca
    26641 aataaataga ttggcctatt caatttttaa accctgccgg gtacttcccg caggggtgta
    26701 tccggctttt tttaaggata cacttaatgg aacaactcga tttggcggct atggctgcat
    26761 gtgatacccc ttatctgttt cgcctgggcc gagtgtctat gacggcaaca gtagataact
    26821 gggcaaaaga gcacctgcct gcacaactgt atgacaatga tctttatgcc caaatattgc
    26881 ttgaggccca ccgccatggc atatggggtg atattcctcc tgaggatgcc aagctgaatc
    26941 agctggcact caagccaggt gaagaaggca gaataatgtc ttcttacaag attggggacc
    27001 aaaaaatttg ggttattaca gaatgggaca gaa
//
LOCUS       DAWGNT010000007        26876 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.007, whole genome shotgun sequence.
ACCESSION   DAWGNT010000007 DAWGNT010000000
VERSION     DAWGNT010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26876
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.007"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            81..1046
                     /locus_tag="WHR98_000198"
     CDS             81..1046
                     /locus_tag="WHR98_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HEZ2306937.1"
                     /translation="MLRLTALAVCTALALGACSPQNSDSAPQAKEQAVSAAQSESASV
                     TVKTARGDVQIPQNPERIAVYDLGMLDTLSKLGVKTGLSVDKNRLPYLEEYFKTTKPA
                     GTLFEPDYEALNAYKPQLIIIGSRAAKAFDKLNEIAPTIEMTADTANLKESAKERIDA
                     LAQIFGKQAEADKLKAEIDASFEAAKTAAQGKGKGLVILVNGGKMSAFGSSSRLGGWL
                     HKDIGVPAVDEAIKEGSHGQPISFEYLKEKNPDWLFVLDRSAAIGEEGQAAKDVLDNP
                     LVAETTAWKKEQVVYLVPETYLAAGGAQELLNASKQVADAFNAAK"
     gene            1065..1256
                     /locus_tag="WHR98_000199"
     CDS             1065..1256
                     /locus_tag="WHR98_000199"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306938.1"
                     /translation="MPSETRMQTASCVSDGIARYGRYRGNGGKRFYWNLPHPLPIRRL
                     QTRLSAPTVRTALFESSTP"
     gene            1275..2243
                     /locus_tag="WHR98_000200"
     CDS             1275..2243
                     /locus_tag="WHR98_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEZ2306939.1"
                     /translation="MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQ
                     VMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFVEPSMAGAGQSAALGLLLMSLLL
                     PAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
                     ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLG
                     LNRTAVLWSGLIIVALITSLVIVTVGNIPFIGLVVPNIISRLMGDKLRQSLPAVALLG
                     ASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAYAV"
     gene            2233..3207
                     /locus_tag="WHR98_000201"
     CDS             2233..3207
                     /locus_tag="WHR98_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEZ2306940.1"
                     /translation="MPSEKNIGFMAGSSRPLWVAFALLLVSCVLFMTLNVKGDWDFVL
                     QLRLTKLAALLMVAYAVGVSTQLFQTLTNNPILTPSILGFDSLYVFLQTLLVFTFGGV
                     GYASLPLTGKFGFELVVMMGGSLLLFYTLIKQGGRDLPRMILIGVIFGILFRSLSSLL
                     SRMIDPEEFTAAQANMFAGFNTVHSELLGIGALILLVSAAVVWRERYRLDVHLLGRDQ
                     AVNLGISYTRNTLWILLWIAALVATATAVVGPVSFFGLLAASLANHFSPSVRHSVRLP
                     MTVCVGGILLVGGQTVFEHFLGMKAVLSVVVEFAGGLVFLYLVLKHKK"
     gene            3252..3878
                     /locus_tag="WHR98_000202"
     CDS             3252..3878
                     /locus_tag="WHR98_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306941.1"
                     /translation="MTQERFPSFFNQAPTITVRDPLAEFLGAAQDGILTYRYADAVRL
                     CGHSCPTVAGAYLMVIKGLKALYGAELPERGSIEAAMQGARDEGTVGVTASVVQLLTG
                     AAPETGFGGIGMQGRFARRNLLSFGAGEINGTLTLRRRDTGKTVAVSLNAALQPFAPQ
                     MRDIMPKAVSGSASAEELERFGQLWQARVKAFLTESADDPQFVIVREV"
     gene            3962..4711
                     /locus_tag="WHR98_000203"
     CDS             3962..4711
                     /locus_tag="WHR98_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEZ2306942.1"
                     /translation="MITIRNVSYRIGTRPILDNVSLDIPEGGITALIGPNGAGKSTLL
                     SFMARLQPLAHGNISYAGKDTPTAELACTLSILTQENSIMSRITVRDLLMFGRYPYHQ
                     GRPTAECRRIVNGAIEEFHLQDFADRYLTELSGGQRQRAMIAMVFCQRTDYVLLDEPL
                     NNLDMYHARSLMQILRRLTDEHKRTTVVVLHDINQAAAYADHVVAMKNGQVAMQGKPD
                     DIFTAANIKTLFDMDVSVLDHQSKKLIVHHI"
     gene            complement(4770..5108)
                     /locus_tag="WHR98_000204"
     CDS             complement(4770..5108)
                     /locus_tag="WHR98_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEZ2306943.1"
                     /translation="MKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTE
                     IYRGAEYAVDFLPKVKIELVLADDAVERAIDVIVEVARSGKIGDGKIFVLPVEEAIRI
                     RTGERADAAV"
     gene            5203..5415
                     /locus_tag="WHR98_000205"
     CDS             5203..5415
                     /locus_tag="WHR98_000205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306944.1"
                     /translation="MPETVIPAQAGIPISAFQQYLKVSVNPNFHIPNRAETTAFDLKT
                     YGSSCPPLYFLQLSAYPALGKNQKNR"
     gene            5573..9535
                     /gene="purL"
                     /locus_tag="WHR98_000206"
     CDS             5573..9535
                     /gene="purL"
                     /locus_tag="WHR98_000206"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HEZ2306945.1"
                     /translation="MSVVLPLRGVTALSDFRVEKLLQKAAALGLPEVKLSSEFWYFAG
                     SEKALDAATVEKLQALLAAQSVEQTPKAREGLHLFLVTPRLGTISPWASKATNIAENC
                     GLAGIERIERGMAVWLEGALTDRQKQQWAALLHDRMTESVLPDFQTASKLFHHLESET
                     FSTVDVLGGGKEALVKANTEMGLALSADEIDYLVENYQALQRNPSDVELMMFAQANSE
                     HCRHKIFNADFILNGEKQPKSLFGMIRDTHNAHPEGTVVAYKDNSSVIEGAKIERFYP
                     NAAENQGYRFHEEDTHIIMKVETHNHPTAIAPFAGAATGAGGEIRDEGATGKGSRPKA
                     GLTGFTVSNLNIPDLKQPWEQDYGKPEHISSPLDIMIEGPIGGAAFNNEFGRPNLLGY
                     FRTFEEKFDGQVRGYHKPIMIAGGLGSIQAQQTHKDEIPEGALLIQLGGPGMLIGLGG
                     GAASSMDTGTNDASLDFNSVQRGNPEIERRAQEVIDRCWQLGGKNPIISIHDVGAGGL
                     SNAFPELVNDAGRGAVFELREVPLEEHGLTPLQIWCNESQERYVLSILEKDLDTFRAI
                     CERERCPFAVVGTATDDGHLKVRDDLFANNPIDLPLNVLLGKPPKTTRSDKTVTPSKK
                     PFHADDIDITEAAYRVLRLPAVAAKNFLITIGDRSVGGMTHRDQMVGKYQTPVADCAV
                     TMMGFNTYRGEAMSMGEKPTVALFDAPASGRMCVGEAITNIAAANIGDIGNIKLSANW
                     MAACGNEGEDEKLYRTVEAVSKACQALDLSIPVGKDSLSMKTVWQDGEEKKSVVSPLS
                     LIISAFAPVQDVRKTVTPELKNVEDSVLLFVDLGFGKARMGGSAFGQVYNNMSGNAPD
                     LDDTGRLKAFYNVIQQLVAEDKLLAYHDRSDGGLFATLAEMAFAGRCGLDIDLNLLLA
                     QTFITNHTALSQSLRTEEVKALAEWQETIARTLFNEELGAVIQVRKQDVADIINLFYQ
                     QQLHHNVFEIGTLTDENTLIIRDGQTHLISDNLIKLQQTWQETSHQIQRLRDNPACAD
                     SEFALIGDNDRSALFADVKFDVNEDIAAPFVNSGAKPKIAILREQGVNGQIEMAAAFT
                     RAGFDAYDVHMSDLMAGRFRLADFKMLAACGGFSYGDVLGAGEGWAKSILFHPALRDQ
                     FAAFFADPDTLTLGVCNGCQMVSNLAEIIPGTAGWPKFKRNLSEQFEARLSMVHVPKS
                     ASLILNEMQGSSLPVVVSHGEGRADFALHGGNISADLGIALQYVDGQNQVTQTYPLNP
                     NGSPQGIAGITNADGRVTIMMPHPERVYRAAQMSWKPEGWTELSGWYRLFAGARKALG
                     "
     gene            9630..10388
                     /gene="gloB"
                     /locus_tag="WHR98_000207"
     CDS             9630..10388
                     /gene="gloB"
                     /locus_tag="WHR98_000207"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HEZ2306946.1"
                     /translation="MKITPVKALTDNYIWMIQHGNHAVCVDPSEPSPVLEFLVRNRLM
                     LAQTWVTHPHPDHEGGAAALWRGYMESPVYGESDIEAATHTVTAGTQFTFGDGQVTVW
                     ATPGHTDRHTSYLLETSDGIHVFCGDTLFSAGCGRVFTGTIEQLYDSFQRFNRLPENT
                     LFYPAHEYTAANLDFAAHIEPDNADIQTALKAAAHTPTLPVTLAHERRVNPFLRVDLP
                     HVRDRAEALSGKTLNSSLDTFVALRELKNQYRTK"
     gene            10702..15176
                     /gene="mspA"
                     /locus_tag="WHR98_000208"
                     /gene_synonym="ausI"
                     /pseudo
     CDS             10702..15176
                     /gene="mspA"
                     /locus_tag="WHR98_000208"
                     /gene_synonym="ausI"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242022.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin/serine protease MspA"
     gene            15408..16862
                     /gene="mgtE"
                     /locus_tag="WHR98_000209"
     CDS             15408..16862
                     /gene="mgtE"
                     /locus_tag="WHR98_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HEZ2306947.1"
                     /translation="MSIEHTPPTHDGETGQNHAERPSADFDRVHSLCEILEPAFEQIE
                     NGTPLEDAPLRDKLTELTVLLSELHPADVAAVLESLPPRERNIVWILVKPEDDGEVLL
                     EVSDAVRETLIESMDKDELLAAVDDLDADELAELADDLPHQVVYEALQTRDEEERAQV
                     KAAMSYEDNQVGAIMDFELVSIRADVACEVVLRYLRRFDSLPDHTDKIFVVDENDVLQ
                     GVLPIRKLLVADPEDLVENVMAKDVVRFRAEDDVEEAAQAFERYDLVTAPVVDENKKL
                     IGRVTVDEMVDVIREESEADMLNMAGLQEEEDLFAPVLDSVKNRWMWLAVNLCTAFLA
                     SRVIGAFEGSIEKIVALAALMPIVAGIGGNSGNQTITMIVRAMAMGQLTGMQAGRLLK
                     KEVGVALVNGIIWGTVMGAVSWLLYGSLGIGLVMIAAMTLNLLLAATVGVLIPVVMEK
                     FGRDPALGSSVLITAVTDSGGFLIFLGLATLFLL"
     gene            complement(16948..17856)
                     /gene="hslO"
                     /locus_tag="WHR98_000210"
     CDS             complement(16948..17856)
                     /gene="hslO"
                     /locus_tag="WHR98_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HEZ2306948.1"
                     /translation="MNQTAINRADVRTRFIFDDMPVRGLHVRLENEWQHIVKQKNYPA
                     AIRRALGELLAAGVLLSGNLKNEGTLIVQVQGQGRLKMLVAEATSDRTVRATARWDEA
                     AEIGEDESLVDLLGEGGVFVLTLQPKDGEPWQGVVPLEGDGIAQMLMNYMKRSEQLDT
                     HIVLSASDEAAGGLLVQRLPEEVLDEEAWEHVSTLARTLTAGELAELDAQHVLYRLFH
                     ETPPRVFEPETFEFSCTCSRGKVSDMLLMLGGEEVGGVVVEQGSIEVDCDFCHSKYVF
                     DETDVNALFGEDVVGVAKGLPRHTVQ"
     gene            18101..18856
                     /locus_tag="WHR98_000211"
     CDS             18101..18856
                     /locus_tag="WHR98_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEZ2306949.1"
                     /translation="MDSFFKPAVWAVLWLMFAVRPALADELTNLLSSREQILRQFAED
                     EQPVLPINRAPARRAGNADELIGSAMGLNEQPVLPVNRVPARRAGNADELIGNAMGLN
                     EQPVLPVNRAPARRAGNADELIGNAMGLLGIAYRYGGTSISTGFDCSGFMQHIFKRAM
                     GINLPRTSAEQARMGTPVARSELQPGDMVFFRTLGGSRISHVGLYIGNNRFIHAPRTG
                     KNIEITSLSHKYWSGKYAFARRVKKNDPSRFLN"
     gene            18875..19093
                     /locus_tag="WHR98_000212"
     CDS             18875..19093
                     /locus_tag="WHR98_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306950.1"
                     /translation="MSMPEMPKWYDDDGQIVSCTEKVKVMSENMAELYQTAQDAFEDA
                     LLMGCGERQLRDYLLALIEGLENPYRKV"
     gene            19238..19582
                     /locus_tag="WHR98_000213"
     CDS             19238..19582
                     /locus_tag="WHR98_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HEZ2306951.1"
                     /translation="MNIIRALLIILGCLAAGETAVFLAGIKLPGSIVGMGVLFALLQA
                     GWVKTSWLQQLTDALMANLTLFLVPPCVAVISYLDLIADDWFSILVSASASTLCVLLV
                     TGKVHRWIRSII"
     gene            19582..20274
                     /locus_tag="WHR98_000214"
     CDS             19582..20274
                     /locus_tag="WHR98_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HEZ2306952.1"
                     /translation="MNEILRQPSVLLFLTLAVYALAIIVRTRTGNIFCNPVLVSTIVL
                     IAYLKILDIDYAVYHNAAQFIDFWLKPAVVVLAVPLYQNRRKIFNQWLPVIVSQLAGS
                     VTGIVTGMYFAKWLGAEREVVLSLASKSVTNPIAIEITRSIGGIPAITAATVIIAGLV
                     GQIAGYKMLKNTVVMPSSVGMSLGTASHAMGIAASLERSRRMAAYAGLGLTFNGVLTA
                     LIAPLLIPVLGF"
     gene            20341..21561
                     /gene="argJ"
                     /locus_tag="WHR98_000215"
     CDS             20341..21561
                     /gene="argJ"
                     /locus_tag="WHR98_000215"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HEZ2306953.1"
                     /translation="MAVNLTEKTAEQLPDIDGIALYTAQAGVKKPGHTDLTLIAVAAG
                     STVGAVFTTNRFCAAPVHIAKSHLFDEDGVRALVINTGNANAGTGAQGRIDALAVCAA
                     AARQIGCKPNQVLPFSTGVILEPLPADKIIAALPKMQPAFWNEAARAIMTTDTVPKAA
                     SREGKVGDKHTVRATGIAKGSGMIHPNMATMLGFIATDAKVSQPVLQLMTQEIADETF
                     NTITVDGDTSTNDSFVIIATGKNSQSEIDNIADPRYAQLKELLCSLALELAQAIVRDG
                     EGATKFITVRVENAKTRDEARQAAYAVARSPLVKTAFFASDPNLGRLLAAIGYAGVVD
                     LDTDLVEMYLDDILVAEHGGRAASYTEAQGQAVMSKAEITVRIKLHRGQSAATVYTCD
                     LSHGYVSINADYRS"
     gene            21621..23030
                     /locus_tag="WHR98_000216"
     CDS             21621..23030
                     /locus_tag="WHR98_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEZ2306954.1"
                     /translation="MTSTFPRRLARKIRQTRRLSRKSIAFLFLLAGSALVALTALFFA
                     HLADFALELNAKLVQQYPWFAWVALPLGLPLIAWLTRKFAPFTAGSGIPQVIASLSLP
                     YGAQKTRLIRLGQTLLKIPLTFLGMLFGASIGREGPSVQVGAAVMGAWGAWCKKHGLA
                     FKGMQENDLMAAGAAGGLAAAFNAPLAGVIFAIEELGRGIMLRWERQILLGVLASGFI
                     QVAIQGNNPYFSGFNGGVLEHIFLWVALSGLVCGAAGGLFGRLLYRGAAAFAPRKIRG
                     FIRNRPLLLAALMGLLLALLGTFYQGKTYGTGYHEAAQALHGIYEAPFGLAAAKWLAT
                     VFSYWAGIPGGIFTPSLTIGAVLGEHIAAIADISQGANIIVLICMAAFLAGATQSPIT
                     SAVVVMEMTGGQSLLFWMLIACIFASQVSRQFSPRPFYHASGMRFRQRVLQETAAQTG
                     NAPARPQTANSKTGMPSEN"
     gene            23219..24610
                     /gene="hrpA"
                     /locus_tag="WHR98_000217"
     CDS             23219..24610
                     /gene="hrpA"
                     /locus_tag="WHR98_000217"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HEZ2306955.1"
                     /translation="MFPDFSQTLSKDRHFLQSAFKNPNKYGGLSKVEEKYRKSHEIFL
                     KRLAALPKPEFDNTLPVHEKLDEIKKAIAENQVTIICGETGSGKTTQLPKICLELGRG
                     AAGLIGHTQPRRLAARSVAERIAEELKSEIGSAVGYKVRFTDHTSRDACVKLMTDGIL
                     LAETQTDRYLAAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAER
                     FSRHFNGAPVLEVSGRTYPVEILYRPLTGKDEDDAEVELTDAIVDAADELARHGEGDI
                     LVFLPGEREIRETAEALRKSTLRRNDEILPLFARLSHAEQHKIFHPSGAKRRIVLATN
                     VAETSLTVPGIKYVIDTGLARVKRYSARAKVEQLHIEKISQAAARQRSGRCGRVSAGV
                     CIRLFSEEDFNNRPEFTDPEIARSNLAAVILRMASLKLGDVAAFPFLEMPDSRYINDG
                     FQVLLELGAVEAA"
     gene            24711..25838
                     /locus_tag="WHR98_000218"
     CDS             24711..25838
                     /locus_tag="WHR98_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306956.1"
                     /translation="MKHLLIDFENVQPQNLDKLLTENTHIWLFIGVLHKMLPISLVQS
                     LLRFGERVHLVQLQKTGKNALDFYLSYYLGQITATDPNAQIGILSRDGGYDVLVEHIL
                     KNHQAKGIVRLANIDEVQHQKITTEPPSALLENTPQPETTLKPQQPLTSYFQAALTAL
                     RRPDAFRPCRLHNLRQNLRKHILSDLFKEKTDEECEITTANVINKLKAQNFISIDEQE
                     TVSYHLSDNDLLQRIQRHILSQRPKTYADFQAVVQNRADALHLTVGTNDIQSFARHLR
                     DQNLIRQNNGEIEYAPFTEPKPQPTPKQPKKTAWEPDEIIWKKVIAALSLKNRPNKTK
                     TLRNTIQALTKSNAQETDKLLQHLQDTQVLRIDGTKIVYIK"
     gene            26015..>26876
                     /gene="lpt3"
                     /locus_tag="WHR98_000219"
     CDS             26015..>26876
                     /gene="lpt3"
                     /locus_tag="WHR98_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipooligosaccharide phosphoethanolamine
                     transferase"
                     /protein_id="HEZ2306957.1"
                     /translation="MMKKSLFVLFLYSSLLTASEIAYRFVFGIETLPAAKMAETFALT
                     FMIAALYLFARYKASRLLIAVFFAFSIIANNVHYAVYQSWMTGINYWLMLKEITEVGS
                     AGASMLDKLWLPALWGVLEVMLFCSLAKFRRKTHFSADILFAFLMLMIFVRSFDTKQE
                     HGISPKPTYSRIKANYFSFGYFVGRVLPYQLFDLSRIPAFKQPAPSKIGQGSVQNIVL
                     IMGESESAAHLKLFGYGRETSPFLTRLSQADFKPIVKQSYSAGFMTAVSLPSFFNAIP
                     HANGLEQISGG"
BASE COUNT         6438 a         8260 c         6676 g         5502 t
ORIGIN      
        1 ttatcattta tcctttctaa agccgttccg gtttgtccga ccggcggctt tgccccaata
       61 tccccatttt ggagacacct atgttacgtt tgactgcttt agccgtatgc accgccctcg
      121 ctttgggcgc gtgttcgccg caaaattccg actctgcccc acaagccaaa gaacaggcgg
      181 tttccgccgc acaatccgaa agtgcgtccg ttaccgtcaa aaccgcgcgc ggcgatgttc
      241 aaataccgca aaaccccgaa cgtatcgccg tttacgattt gggtatgctc gacaccttga
      301 gcaaactggg cgtgaaaacc ggtttgtccg tcgataaaaa ccgcctgccg tatttagagg
      361 aatatttcaa aacgacaaaa cctgccggaa ctttgttcga gccggattac gaagccttaa
      421 acgcctacaa gccgcagctc atcatcatcg gcagccgcgc cgccaaggcg tttgacaaat
      481 taaacgaaat cgcgccgacc atcgaaatga ccgccgatac cgccaacctc aaagaaagtg
      541 ccaaagagcg catcgacgcg ctggcgcaaa tcttcggcaa gcaggcggaa gcggacaagc
      601 tgaaggcgga aatcgacgcg tcttttgaag ccgcgaaaac tgccgcacaa ggtaagggca
      661 aaggtttggt gattttggtc aatggcggca agatgtccgc cttcggctcg tcttcacgac
      721 tgggcggctg gctgcacaaa gacatcggcg ttcccgctgt tgacgaagcc atcaaagaag
      781 gcagccacgg tcagcctatc agctttgaat acctgaaaga gaaaaatccc gactggctgt
      841 tcgtccttga ccgcagcgcg gccatcggcg aagagggtca ggcggcgaaa gacgtgttgg
      901 ataatccgct ggttgccgaa acaaccgctt ggaaaaaaga acaggtggtt tacctcgttc
      961 ccgaaactta tttggcagcc ggtggcgcgc aagagctgct gaatgcaagc aaacaggttg
     1021 cggatgcgtt caacgcggca aaataatgaa acggcggcat ttcgatgccg tctgaaacac
     1081 ggatgcaaac cgcttcctgt gtttcagacg gcattgcccg atacgggcgt tatcgcggga
     1141 atggcggcaa gcgtttttat tggaacttgc cccatccttt gcccatacgg aggcttcaaa
     1201 caaggctttc cgctccgacg gttcggactg ccttgtttga atcttctacg ccttaacgct
     1261 tttcccttct gtttatgact gccaaacctt tttccctcaa cctgaccaac ctcctgctgc
     1321 tggcggtgtt gtttgccgtc agcctgtcgg tcggcgttgc cgatttccgc tggtcggatg
     1381 tgttttcgct gtcggacagc cagcaggtta tgttcatcag ccgcctgccg cgcacgtttg
     1441 cgattgtgct gacgggcgcg tcgatggcgg tggcggggat gattatgcag attttgatgc
     1501 gtaaccgttt tgtcgagcct tctatggcgg gcgcgggtca aagcgcggct ttgggtttgc
     1561 ttctgatgtc cctgctgctg cctgccgcgc cgctgccggt caaaatgtcg gttgccgccg
     1621 ttgccgcgct gatcgggatg ctggtgttta tgctgctgat ccgccgtctg ccgccgacgg
     1681 cgcaactgat ggtgccgctg gtggggatta ttttcggcgg cgtggttgag gcagtggcga
     1741 cgtttatcgc gtatgaaaac gaaatgctgc aaatgctcgg cgtgtggcag cagggcgatt
     1801 tttcgagcgt gctgctgggg cggtacgagc tgctttggat tacgggcggt ttggcggtgt
     1861 ttgcctatct gattgccgac cggctgacga ttttggggct gggcgagacg gtcagcgtga
     1921 atttgggttt gaaccggacg gcggtgttgt ggtcggggct gattattgtg gctttgatta
     1981 cgtcgctggt tatcgttacg gtcggcaata tcccgtttat cgggctggtc gtgccgaaca
     2041 tcatcagccg cctgatgggc gacaagctgc gacaaagcct gcctgcggtg gccttgctgg
     2101 gcgcatcttt ggtgttgctg tgcgacatta tcggacgcgt gattgtgttt ccgtttgaaa
     2161 ttccggtctc tacggttttt ggtgtattgg gtacggcttt gtttttgtgg cttttgttga
     2221 ggaaacccgc ctatgccgtc tgaaaaaaat atcggtttta tggcaggaag cagccgcccg
     2281 ttgtgggtcg cctttgcgct gttgctggtt tcctgcgtcc tgtttatgac gctcaacgtc
     2341 aaaggcgatt gggattttgt tttgcaactg cggctgacca aacttgccgc gctgctgatg
     2401 gtcgcctatg cggtcggcgt gtccacgcaa ctcttccaaa cgctgaccaa taatccgatt
     2461 ctgacccctt caattttggg tttcgattcg ctgtatgtgt ttttgcagac cttgctggtg
     2521 tttacgttcg gcggcgtggg ctatgcttcc ctgccgttga cgggcaaatt cggctttgaa
     2581 ctggtcgtca tgatgggcgg ctcgctgctg ctgttctaca cgctcatcaa acagggcgga
     2641 cgcgatttgc cgcgtatgat tttaatcggc gtgatttttg ggattttatt ccgcagcctt
     2701 tcgtcgctgc tttcgcgcat gatcgatccc gaagaattta ccgccgcgca ggcgaatatg
     2761 tttgccggat tcaataccgt ccacagcgag cttttgggca taggcgcgct gattctgctc
     2821 gtcagcgcgg cggtcgtttg gcgtgaacgc taccgcttgg acgtacacct tttggggcgt
     2881 gaccaagccg tcaatttggg catcagctac acgcgcaaca ccttatggat actgctttgg
     2941 attgccgcat tggtggcgac ggcgaccgcc gtggtcggtc cggtaagctt tttcgggctt
     3001 ctcgccgcct cgcttgccaa ccacttttcc ccgtccgtgc gccattccgt ccgcctgccg
     3061 atgacggttt gtgtcggcgg catcctcttg gtcggcggac agaccgtatt cgaacacttc
     3121 ttgggcatga aggcggtatt aagcgtggtg gtcgaatttg cgggcggact cgttttcctc
     3181 tatctcgttt taaaacacaa aaaatgacgg atgccgtctg aacggcagcc cgactcgaaa
     3241 ggacaaacca tatgacgcaa gaacgtttcc catcattctt caaccaagcc ccgaccatca
     3301 ccgtcagaga cccgcttgcc gaattcctcg gcgcggcgca agacggcatc ctcacttacc
     3361 gctacgccga tgccgtgcgc ctgtgcggac attcctgccc gaccgtcgcg ggcgcgtacc
     3421 tgatggttat caaaggactg aaagcccttt acggcgcaga gctgcccgaa cgcggcagca
     3481 tcgaagccgc catgcaggga gcgcgcgacg aaggcacggt cggcgtaacc gcgtccgtcg
     3541 tccaactcct caccggcgca gccccggaaa ccggcttcgg aggcatcgga atgcagggac
     3601 gcttcgcccg ccgcaacctc ttatcctttg gtgcaggcga aatcaacggc acactgaccc
     3661 tgcgccgccg cgataccggc aaaaccgttg ccgtcagcct caacgccgcc ctgcaaccct
     3721 ttgcgccgca aatgcgcgac atcatgccca aagccgtcag cggcagcgca agcgcagaag
     3781 aactcgaacg cttcggacaa ctctggcagg cacgcgttaa agcatttttg accgaatcgg
     3841 cggacgaccc gcagttcgtc atcgtccgcg aagtgtgaac gttcagacgg cattccgaat
     3901 ttcaaatgcc gtctgaaccc ccgccaaaca acaacaaacc tacgcccgac aagcatccgc
     3961 catgattacc atccgcaacg tcagctaccg catcggcaca cgccccatcc tcgacaacgt
     4021 cagcctcgac atccccgaag gcggcattac cgcactgatc ggccccaacg gcgcaggcaa
     4081 gtccaccctc ctctccttta tggcgcggct tcagcctctg gcacacggca acatcagcta
     4141 cgcaggcaaa gacaccccca ccgccgaact cgcctgcacg ctctccatcc tcacccaaga
     4201 aaacagcatc atgagccgca tcaccgtgcg cgacctgctc atgttcggcc gctatcccta
     4261 ccatcaaggc agaccgactg ccgaatgccg ccgtatcgtt aacggtgcaa tcgaagaatt
     4321 ccacctgcaa gacttcgccg accgctacct gaccgagctt tccggcggac aacgccaacg
     4381 cgccatgatt gccatggtgt tctgccagcg caccgactac gttttgctgg acgaaccgct
     4441 gaacaacctc gacatgtatc atgcccgctc cctcatgcaa atcctgcgcc ggctgaccga
     4501 cgaacacaag cgcaccaccg tcgtcgtatt acacgacatc aaccaggccg ccgcctacgc
     4561 cgaccacgtc gtcgccatga aaaacggcca agtcgccatg cagggcaagc ccgacgacat
     4621 tttcaccgcc gcaaacatca aaaccctgtt cgatatggat gtgtccgtcc tcgaccacca
     4681 aagcaaaaaa ctcatcgtcc accatatctg aagctcaaaa agaaaatgcc gtctgaaaac
     4741 ctttcagacg gcatttccat tccaaacgct caaaccgccg cgtccgcacg ttcgcccgtg
     4801 cggatacgga ttgcctcctc gaccggcagc acaaaaatct tgccgtcgcc gatttttccc
     4861 gaacgcgcca cctcgacaat cacgtcaatc gcgcgttcca cagcatcatc cgccaacacc
     4921 agctcgattt tgactttggg caggaaatcg acggcgtatt ccgcaccgcg atagatttcc
     4981 gtatgcccct tctgcctgcc gaaccctttg acctcgctga cggtcatgcc cgtaatgccg
     5041 atttccgtca acgcctcgcg cacgtcgtcg agtttgaacg gtttgacaat cgcctcgatt
     5101 tttttcatca cattctccat taattaacgt aaacacacga caaatatagc agaaaccgcc
     5161 ggcaaacgat aaacggtact gttcgcccgg cgatgcggcg acttgccgga aaccgtcatt
     5221 cccgcgcagg cgggaatccc gatctctgca tttcagcaat atttaaaggt ttctgtaaat
     5281 ccaaacttcc atattcctaa ccgtgcggaa acgacggcat ttgatctaaa aacatacgga
     5341 agcagttgcc cgcccctcta cttcctgcaa ttatccgcat acccggcttt gggtaaaaat
     5401 cagaaaaaca gataaaaccc ttattcctta atatcttcag acggcacctg tattttcccc
     5461 aactgtatgc cgtctgaaga ttgtcaacat tttaagccaa aatatccaag caatacaaac
     5521 ctgtccggcg tataatccct ctttttccca accgcatttg agagccgaat ccatgtctgt
     5581 cgttttgccc ttgcgcggcg ttaccgccct ttccgatttc cgtgtcgaaa aactcttgca
     5641 aaaagccgcc gcactcggtc tgcccgaagt caaattaagc agcgaatttt ggtatttcgc
     5701 cggcagcgag aaagcacttg atgccgcgac tgtcgaaaaa ctgcaagcct tgttggcggc
     5761 gcaaagcgtt gaacaaacgc caaaagcgcg cgagggcttg catttgtttt tggtcacgcc
     5821 ccgtttgggt acgatttcgc cgtgggcttc caaggcgacc aatatcgcgg aaaactgcgg
     5881 tttggcaggc atagagcgca tcgagcgcgg tatggcggtg tggctggaag gcgcacttac
     5941 cgacaggcaa aaacaacaat gggcggcttt gctgcacgac cgcatgaccg aatccgtatt
     6001 gcccgatttt cagacggcat ccaaattatt ccaccatctc gaatccgaaa ccttctccac
     6061 cgtcgatgtt ttgggcggcg gtaaagaggc tttggtcaaa gccaataccg aaatgggttt
     6121 ggcactctcc gccgacgaaa tcgattatct ggttgaaaac tatcaggctt tgcagcgcaa
     6181 tccgtccgat gtggagctga tgatgttcgc gcaggcaaac agcgaacact gccgccacaa
     6241 aatcttcaac gccgatttca tcctcaacgg cgaaaaacaa ccgaaatccc tgttcggcat
     6301 gatacgcgac acgcacaacg cgcatcccga aggtacggtc gtcgcctata aagacaattc
     6361 gtccgtgatc gaaggcgcga aaatcgagcg tttctatccg aatgcggcgg aaaaccaagg
     6421 ctaccgtttc cacgaagaag acacgcatat catcatgaaa gtggaaacgc acaaccaccc
     6481 gaccgccatc gcgccgtttg cgggcgcggc gacgggcgcg ggcggtgaaa tccgcgacga
     6541 aggcgcgaca ggtaaaggtt cacgtccgaa agcaggcttg accggcttta ccgtgtccaa
     6601 cctcaacatc cccgacctca aacagccgtg ggaacaagat tacggcaagc cggaacatat
     6661 ttcctcgccg ctggacatca tgattgaagg cccaatcggc ggcgcggcgt tcaacaacga
     6721 attcggccgc cccaacctct tgggctactt ccgcactttt gaagagaagt ttgacggtca
     6781 ggttcgcggc tatcacaaac cgattatgat tgcaggcggc ttgggcagca ttcaggcgca
     6841 gcagacgcat aaagacgaaa tccccgaagg cgcgttgctg atccaactgg gcggcccggg
     6901 tatgcttatc ggcttgggcg gcggcgcggc ttcttcgatg gataccggta caaacgacgc
     6961 ttctttagac ttcaactccg tacaacgcgg caaccccgaa atcgaacgcc gcgcgcagga
     7021 agtcatcgac cgctgctggc agcttggcgg caaaaacccg attatttcca tccacgacgt
     7081 gggcgcagga ggtttgtcca acgccttccc cgaactcgtc aacgatgccg gacgcggcgc
     7141 ggtattcgag ctgcgcgaag tgccgctgga agaacacggt ttaacgcctt tgcaaatctg
     7201 gtgcaacgaa tcgcaagagc gttatgtctt gtcgattttg gaaaaagatt tggacacctt
     7261 ccgcgccatc tgcgaacgcg aacgctgccc gtttgccgta gtcggcacgg cgaccgacga
     7321 cggtcatttg aaagtgcgcg acgatttgtt cgccaacaac cccatcgatt tgccgctgaa
     7381 cgtcttgctc ggcaaaccgc ccaaaaccac gcgcagcgac aaaacggtta cgccatctaa
     7441 aaaaccgttt cacgccgacg atatcgacat caccgaagcc gcctaccgcg ttttgcgcct
     7501 gcctgccgta gccgccaaaa acttcctgat taccatcggc gaccgcagcg tcggcggcat
     7561 gacccaccgc gaccaaatgg tcggcaaata ccaaaccccc gtagccgact gcgccgttac
     7621 catgatgggc ttcaatacct atcgcggcga agcaatgtct atgggcgaaa aaccgaccgt
     7681 tgccctgttt gacgcgcccg cctcgggcag aatgtgcgtc ggcgaagcca tcaccaacat
     7741 cgcggcagcc aatatcggcg acatcggcaa catcaaactc tccgccaact ggatggcggc
     7801 gtgcggcaac gaaggcgaag acgaaaaact ctaccgcacc gtcgaagcgg tttccaaagc
     7861 ctgtcaggca ttggatttga gcattcccgt gggcaaagac agcctgtcga tgaaaaccgt
     7921 atggcaggat ggcgaagaga aaaaatccgt cgtttcgccg ttaagcctga ttatctccgc
     7981 gttcgcgccg gttcaagacg tacgcaaaac cgttacgccc gaattgaaaa acgtcgagga
     8041 cagcgtattg ctgtttgtcg atttgggctt cggcaaagcg cgtatgggcg gctctgcatt
     8101 cggtcaggta tacaacaaca tgagcggcaa cgcgcccgat ttggacgata caggccgtct
     8161 gaaagccttt tacaacgtga ttcaacagct tgtcgccgaa gacaaactct tggcgtatca
     8221 cgaccgcagc gacggcggtt tgtttgcgac gctggcggag atggcgtttg cggggcgttg
     8281 cggcttggat atagatttaa atttattgct tgcacaaaca tttattacca accataccgc
     8341 tctgtctcaa tcattgcgga ctgaagaggt aaaagcgttg gctgaatggc aagaaaccat
     8401 tgcccgcaca ttatttaatg aagagttggg tgctgttatc caagttagaa aacaagatgt
     8461 tgccgatatt atcaatttat tctatcaaca acagctgcat cataatgtct ttgaaatcgg
     8521 tacgttaact gatgagaaca cgttaatcat ccgcgacggg caaacgcacc ttatttctga
     8581 caacctaatc aaactgcaac aaacctggca agaaaccagc catcaaatcc aacgcctgcg
     8641 cgacaacccc gcctgcgccg acagcgagtt cgccctgatt ggcgacaacg accgcagcgc
     8701 attgtttgcc gacgtgaagt ttgacgtgaa cgaagacatc gccgcacctt tcgtcaacag
     8761 cggcgcgaaa cccaaaatcg ccatcctgcg cgaacagggc gtaaacgggc aaatcgaaat
     8821 ggccgccgcg ttcactcgcg ccggtttcga tgcctacgac gtgcatatgt ccgacctgat
     8881 ggcaggccgc ttccgccttg ccgacttcaa aatgctggcg gcgtgcggcg gtttcagcta
     8941 cggcgacgta ctcggcgcgg gcgaaggctg ggcgaaatcg attctgttcc accctgctct
     9001 gcgcgaccag tttgccgcct tcttcgccga cccggacacg ctgacattgg gcgtgtgcaa
     9061 tggctgccaa atggtcagca accttgccga aatcatcccc ggcacggcag gctggccgaa
     9121 gttcaaacgc aacctgagcg aacagtttga agcgcgccta agcatggttc acgtccccaa
     9181 atccgcgtcg ctgattctga acgaaatgca aggctccagc ctgcccgtcg tcgtcagcca
     9241 cggcgaaggc cgcgccgact tcgcacttca cggcggcaac atttctgccg atttgggcat
     9301 tgcgctgcaa tatgtggacg gtcaaaacca agttacccaa acctatccgc tcaaccccaa
     9361 cggctcgccg caaggcatcg ccggcattac caacgccgac ggccgcgtga ccatcatgat
     9421 gccccacccc gaacgcgtgt accgcgccgc acaaatgagc tggaaaccgg aaggctggac
     9481 ggaactgtcc ggctggtacc gcctctttgc cggcgcacgt aaagccttgg gctaaccgcc
     9541 ctactcaaac caatgccgtc tgaagaatat ttcagacggc gttccggcat accatccttt
     9601 aaacggtatc cgtccaccga ggaacactca tgaaaatcac ccccgtcaaa gccctaaccg
     9661 acaactacat ttggatgata cagcacggca accatgccgt ctgcgtcgac ccttccgaac
     9721 cctcgcccgt cttggaattc ctcgtccgca accgcctcat gcttgcccaa acatgggtaa
     9781 ctcaccccca tcccgaccac gagggcggtg cggcggcact ctggcgcggc tacatggaat
     9841 cgcccgttta cggcgaatcc gacatcgaag cagcaaccca caccgtaacc gccggcaccc
     9901 aattcacctt cggcgacgga caggttaccg tttgggcaac acccggccac acagaccgcc
     9961 acaccagcta ccttctcgaa acttcagacg gcatacacgt tttctgcggc gacaccctgt
    10021 tttccgccgg ctgcggacgc gtgtttaccg gcacaatcga acagctttac gacagcttcc
    10081 aacgcttcaa ccgcctgcct gaaaacaccc tgttctaccc agcacacgaa tacaccgccg
    10141 ccaacctgga ttttgccgcc catatcgagc cggacaacgc cgacattcag acggcactga
    10201 aagcggcggc gcatacgcct accctgcccg ttaccctcgc gcacgaacgc cgcgtcaatc
    10261 cgtttttgcg cgtcgacctg ccgcacgtca gagaccgcgc cgaggcattg agcgggaaaa
    10321 cgttaaacag cagcctcgat acctttgtcg cgctgcgtga acttaaaaac caataccgga
    10381 cgaaataaaa caacgggaaa acgcagccat tcctaggatt tttattaaaa tcttaaataa
    10441 aatcatacaa tcatcgccaa tagacgaaag gacaccgttg ccttataatc aaacaaaaac
    10501 aaaatatata atatagtgga ttgaatttaa atcaggacaa ggcgacgaag ccgcagatag
    10561 tacggcaagg cgaggcaacg ctgtactggt ttttgttaat ccactatatt gttaatccac
    10621 tatataaatc cagcacaaaa cgggatcggt gattcttgtc cgcaagaatc gttgattttc
    10681 tctattacac ggataatcat catgcgcttc acacacacca ccccattttg ttccgtattg
    10741 tccaccctcg gtctttttgc cgtttcccct gcttactcat ccattgtccg caacgatgtc
    10801 gattaccaat attttcgcga ctttgccgaa aataaaggcg cgttcgccgt aggtgcaagc
    10861 aatatttcca tccaagacaa gcaaggcaaa atattaggca gggttctcaa cggcatcccc
    10921 atgcccgact tccgagtcag caaccggcaa accgccatcg ccaccctgat tcacccccaa
    10981 tacgtcaaca gtgtcaaaca caacgtcggc tacggttcca tacaattcgg caacgacacc
    11041 caaaatccag aagaacaagc ctatacctac cgcctcgtat cacgcaaccc gcacccggac
    11101 tacgactacc accttccccg cctcaacaaa ctggttaccg aaatctcacc tgccgcactc
    11161 agcagcgtac ccttgcttgg aaacggccag ccaaaggcca atgcctacct cgataccgac
    11221 cgcttcccct actttgtacg actcggctca ggcacgcaac aagtccgcaa agcagacggc
    11281 acgcgtacac gaaccgcccc ggcataccaa tacctgaccg gcggcacgcc gctgaaagta
    11341 ttggggttcc aaaaccacgg cttactcgtc ggcggcagcc tgaccgacca accccttaac
    11401 acctacgcaa tcgccggaga cagcggttcc cccctgtttg ccttcgacaa gcatgaaaac
    11461 cgctgggtgc ttgcgggcgt actcagcacc tacgccggct tcgataattt cttcaacaaa
    11521 tacatcgtca cgcaacccga attcatccgt tccaccatcc gccaatacga aacccggctg
    11581 gatgtcgggc tgaccaccaa cgaactcata tggcgcgaca acggtaatgg cgacagcacc
    11641 ctgcaagggc tcaacgaacg catcaccctg cccattgcaa acccttcgct tgccccacaa
    11701 aacgacagca ggcacatgcc gtctgaagat gccggcaaaa cgctcatcct atccagcagg
    11761 ttcgacaaca aaacactgat gctggcagac aatatcaacc aaggcgcagg cgcattgcag
    11821 ttcgacagca acttcaccgt cgtcggtaaa aaccacacat ggcaaggtgc aggcgttatc
    11881 gtagccgacg gcaaacgcgt cttctggcaa gtcagcaacc ccaaaggcga ccggctctcc
    11941 aaactgggcg caggcacgct tatcgccaac ggacaaggca tcaaccaggg cgacatcagc
    12001 atcggggaag gcactgtcgt actcgcccaa aaagctgctt cagacggcag caaacaagca
    12061 ttcaaccaag tcggcatcac cagcggcagg ggtacggccg tcctcgccga cagccagcaa
    12121 atcaaatccg aaaacctcta tttcggcttc aggggcggac ggctcgacct caacggcaac
    12181 aaccttgcct ttacccatat ccgccatgcg gacggcggcg cgcagatcgt caaccacaac
    12241 cctgaccaag ccgcgacact gacgctgacc ggcaaccccg tcctcagtcc tgagcatgtc
    12301 gagtgggtgc aatggggcaa ccgtccgcaa ggcaacgcgg cggtttacga atacatcaac
    12361 ccgcaccgca accgtcggac cgactacttc atactcaaac ccggcggcaa cccgcgcgaa
    12421 tttttcccgt taaatatgga aaactcaaca agctggcaat ttatcggcaa caacaggcaa
    12481 caggccgcca aacaagtcgc ccaagccgaa aatgcccgcc ccgacctaat taccttcggc
    12541 ggatacttgg gtgagaacgc gcaaacgggc aaagccgcac cgagttacag caaaaccaat
    12601 atcgaatggg tgaatggtcc aaacacccca cacaagccct cgccctatac gaatacgcca
    12661 acccgcacag gggcaggcgt accgacgatt accgcctcaa agaaggcggc aaccccggcg
    12721 cctacttccc atggaatgcc tacagcaccc aagactggga atttctcgga catgaccggc
    12781 gaagcagcca tagaaaaaaa ccgccatatc gcaaatgccg ccgtatacgg ccggcccgaa
    12841 taccgttaca acggcgcact caacctgcac tatcgtccca aacgcaccga cagcacgctg
    12901 ttgctcaacg gcggcatgaa ccttaacggg gaagtcttga ttgagggcgg caatatgatt
    12961 gtgtcaggca ggcccgtacc ccatgcctac gaccaccagg ccaaacgcga acccgttctt
    13021 gaaaacgaat ggaccgacgg cagcttcaag gctgcacggt tcaccctacg aaaccatgcc
    13081 cgactgacag cagggcgcaa taccgcgcat ctggacggcg acataaccgc atacaatctg
    13141 tccggcatcg acctcggctt tatccaaggc aaaacaccgg aatgctaccg ctcctaccat
    13201 agcggcagca cccactgcac acccaacgcc gttttaaaag ccgaaaacta tcgtgcacta
    13261 cctgtaacgc aagtacgcgg cgacattacc cttaacgacc gttcagagct ccgcctgggc
    13321 aaagcacacc tgtacggcag catccgtgcc ggcaaagaca ccgcagtccg catggaagca
    13381 gacagcaact ggacactttc ccagtccagc cacaccggcg cactgacgct tgacggcgca
    13441 caaattaccc tgaaccccga tttcgccaat aatacacaca acaaccgctt caacacactg
    13501 accgtcaacg gcacacttga cgggttcggc acattccgat tcctgaccgg catcgtccga
    13561 aaacaaaatg cccccccctc aaactggaag gggacagccg cggcgcattc caaatccacg
    13621 tcaaaaacac cggacaagaa cctcaaacaa ccgaatcgct tgcacttgtg agcctcaatc
    13681 cgaaacacag ccaccaagcc cgattcaccc tccaaaacgg ctatgccgat ttgggtgcct
    13741 accgctacat cctccgcaaa aacaacaacg gatacagcct gtacaacccg ctcaaagagg
    13801 ccgaacttca aattgaagcc acgcgtgcgg aacatgagcg caaccaacag gcatacaacc
    13861 aattacaggc aaccgacatc agcagacagg ttcaacatga ctctgacgcg accaggcagg
    13921 cactacaggc ctggcagaac agtcaaaccg aacttgcccg catcgacagc caagtccaat
    13981 atctgtccgc ccaattgaaa cagacagacc cgctgaccgg cattctgacg cgtgcccaaa
    14041 acctgtgtgc cgcacaagga tacagtgtcg atatctgccg tcaggttgcc aaagccgccg
    14101 acacgaacga cctgacactc ttcgaaaccg aactggatac gtatatagaa cgtgtagaaa
    14161 tggccgaatc cgaacttgac aaagcacggc aaggcggcga tgcgcaagcc gtcgaaacag
    14221 cccggcacgc ctacctgaac gcactcaacc gtctgtcccg acaaatccac agtttgaaaa
    14281 ccggcgttgc cggcatccgt atgccgaacc tggccgaact gatcagccgg tcggccaaca
    14341 ccgccgtttc cgaacaggcc gcctacaata ccggccggca acaggcggga cgccgcatcg
    14401 accgccacct taccgatccg cagcagcaaa acatctggct ggaaaccggt acgcaacaaa
    14461 ccgactacca tagcggcaca caccgtccct accaacaaac taccaactat gcacatatcg
    14521 gcatccaaac cggcatcacc gaccgtctca gtgtcggtac gattttaacc gatgagcgca
    14581 caaacaaccg ttttgatgaa ggcgtatccg cccgaaaccg cagcaacggc gcacatctgt
    14641 tcgtcaaagg ggaaaacggc gcactctttg ccgcggcaga tttaggctac agcaacagcc
    14701 gtacccgatt taccgattat gacggggctg ccgtccgccg ccacgcatgg gatgcaggca
    14761 tcaacaccgg catcaaaatc gataccggca tcaacctcag accctatgcc ggcatccgta
    14821 taaaccgcag caacggcaac cggtacgtac tcgacggcgc agagataaac agcccggcgc
    14881 aaatccaaac cacatggcat gccggcatcc gtctcgataa aaccgtcgaa ctgggtcaag
    14941 ccaagctgac ccccgctttc agcagcgatt actaccatac ccgccaaaac agcggttccg
    15001 ccctcagcgt caacgaccgt accttactgc agcaagccgc ccacggcaca ctgcataccc
    15061 tgcaaatcga cgccggatac aaaggctgga acgccaaact tcatgccgct tacggcaaag
    15121 acagcaacac cgcccgccac aaacaggcag gaatcaaaat aggctacaac tggtaacaag
    15181 ccgataaaaa tgccgtctgg aacccgcgtt tcagacggca tttgcgttaa aaatagtaaa
    15241 ccgttccaaa agggagtaga atagtgccgt ttccaaccct gcgcctgtac cgtcaggctt
    15301 ttattatgga ccttcccagt tcgtttttac tgaacgcccc ttccgattcc aaacgacaat
    15361 aaccatcccg ccggaatgcc tccccgcaca cgacgggcgg agcatttatg agcatcgaac
    15421 acactcctcc gacacacgac ggcgaaaccg gtcaaaacca tgccgaacgc ccttccgctg
    15481 atttcgaccg tgtccactcc ctctgcgaaa tcctcgaacc tgcctttgaa caaatcgaaa
    15541 acggcacacc gctcgaagac gcgccgctgc gcgacaagct gaccgagctg accgtcctct
    15601 tgagcgagct gcaccctgcc gacgtggcgg cagtgttgga atcgctgccg ccgcgcgaac
    15661 gcaatatcgt ctggattctg gtcaaaccgg aagacgacgg cgaagtcttg ctggaagtgt
    15721 ccgatgcggt gcgcgaaacg ctgatcgagt cgatggacaa agacgaattg ttggcggcgg
    15781 tcgatgattt ggacgcggac gaattggcgg agctggcaga cgatttgccg caccaagtgg
    15841 tttatgaagc cttgcagacg cgcgacgagg aagagcgcgc acaagtcaaa gcggcaatgt
    15901 cctacgaaga caaccaagtc ggtgcgatta tggacttcga gttggtcagc atccgcgccg
    15961 atgtcgcctg tgaagtggtg ctgcgctatc tgcgccgctt cgacagcctg cccgaccata
    16021 ccgacaagat ttttgtggtc gatgaaaacg acgtactgca aggcgtgctg cccatccgca
    16081 aacttttggt cgccgatccc gaagatttgg tggaaaacgt gatggcgaaa gatgtcgtgc
    16141 gtttccgcgc cgaagacgac gtggaagaag cagcgcaggc attcgaacgc tatgacttgg
    16201 ttaccgcgcc cgtcgtcgat gaaaacaaaa agctcatcgg cagggtgacc gttgacgaaa
    16261 tggtggacgt gatccgcgaa gaatccgaag cggatatgtt gaacatggca ggtttgcagg
    16321 aagaggaaga cctgttcgcc cccgtcttgg attccgtcaa aaaccgctgg atgtggctcg
    16381 ccgtcaacct ctgcaccgcc ttcctcgcca gccgcgtcat cggcgcgttt gaaggcagca
    16441 tcgaaaaaat cgtcgcactc gccgcgctga tgcccatcgt cgccggcatc ggcggcaact
    16501 cgggcaacca gacgattacc atgattgtcc gcgcgatggc gatggggcaa ctgacaggca
    16561 tgcaggcagg caggctgttg aaaaaagaag tcggtgtcgc cttggtcaac ggcatcattt
    16621 ggggaacggt catgggcgca gtatcttggc tgctttacgg cagcctcggc atcgggctgg
    16681 ttatgattgc cgcgatgacg ctcaacctcc tgctggcggc aaccgtcggc gtattaattc
    16741 ccgtggtaat ggaaaagttc ggacgcgatc ccgcactggg cagctcggtg ctgattaccg
    16801 ccgttaccga ctccggcggc ttcctgattt tcttggggct cgccacccta ttcctgcttt
    16861 aaatgccgtc tgaacccgcg caaaaatgcc gtctgaagcg gaagctgctt cagacggcat
    16921 ttgactattt atccttgttg cacaagatta ttggacggta tgccggggca gccctttggc
    16981 aacgccgacc acatcctccc cgaacagcgc gttgacatcg gtttcgtcaa acacatattt
    17041 gctgtggcag aaatcgcaat cgacttcgat gctgccttgt tccaccacca cgccgccgac
    17101 ttcttccccg cccagcatca acagcatatc gctgactttg ccgcgcgaac aggtgcatga
    17161 aaattcaaac gtttccggct cgaacacgcg cggcggcgtt tcgtggaaca agcggtacaa
    17221 aacatgttgc gcatccaatt ctgccaactc gcccgccgtc agcgtgcgcg ccagcgtact
    17281 gacgtgttcc catgcctctt catccaacac ctcttcaggc agacgctgca ccagcagacc
    17341 gcccgccgct tcatcgcttg cagacaggac gatgtgcgta tcaagctgtt cggaacgttt
    17401 catatagttc atcaacattt gcgcgatacc gtcgccttcc aaaggcacta cgccctgcca
    17461 gggttcgccg tctttgggct gcagcgtcag cacgaatacg ccgccctcgc ccaaaagatc
    17521 gaccaaactt tcatcttcac cgatttctgc cgcctcgtcc caccgcgcgg tcgcacggac
    17581 ggtacggtcg gaagtcgctt ccgcaaccag cattttcagc cgcccctgcc cctgaacctg
    17641 cacaatcagc gtgccttcgt ttttgaggtt gcccgacagc agaacaccgg cagccaacag
    17701 ctcgcccaag gcgcggcgga tggcggcggg atagtttttc tgttttacaa tgtgctgcca
    17761 ctcgttttcc agacggacgt gcagcccgcg cacgggcata tcgtcgaaga taaagcgggt
    17821 acgcacatcg gcgcggttga tggcggtttg attcatgatt ttctctgact gattgttcgg
    17881 atggcggcta tatggttgcg gtcggcgcga aaacaagacg gacggcggat gcgcttccca
    17941 aattatcaat aaattatata aaaatcaaca tattaactca atctaacaag ccgttttttg
    18001 ccaaacagcc gtttttttat atacaatcaa caagatattt tcgactgata cagcataaca
    18061 tcgcacggcg gcacgatgcc tcctgcgcgg aaacaccgat atggattctt ttttcaaacc
    18121 ggcagtttgg gcggttttgt ggctgatgtt tgccgtccgc cccgcccttg ccgacgagtt
    18181 gaccaacctg ctcagcagcc gcgagcagat tctcagacag tttgccgaag acgaacagcc
    18241 cgttttaccc atcaaccgag cccccgcccg gcgggcgggc aatgccgacg aactcatcgg
    18301 cagcgcgatg gggcttaacg aacagcccgt tttacccgtc aaccgagtcc ccgcccggcg
    18361 ggcgggcaat gccgacgaac tcatcggcaa cgcgatgggg cttaacgaac agcccgtttt
    18421 acccgtcaac cgagcccccg cccggcgggc gggcaatgcc gacgaactca tcggcaacgc
    18481 gatgggactt ttgggtattg cctaccgcta cggcggcaca tcgatttcta ccggttttga
    18541 ctgcagcggc ttcatgcagc acatcttcaa acgcgccatg ggcatcaacc tgccgcgcac
    18601 gtcggcagaa caggcgcgga tgggtacgcc ggttgcccga agcgaattgc agcccgggga
    18661 tatggtgttt ttccgcacgc tcggcggcag ccgcatttcc catgtcggac tttatatcgg
    18721 caacaaccgc ttcatccacg cgccgcgcac ggggaaaaat atcgaaatca ccagcctgag
    18781 ccacaaatat tggagcggca aatacgcgtt cgcccgccgg gtcaagaaaa acgacccgtc
    18841 ccgctttctg aactgatttc ccaaggaata cgcaatgagt atgcccgaaa tgcccaaatg
    18901 gtacgacgat gacggacaga tcgtgtcctg taccgaaaag gtcaaagtga tgtccgaaaa
    18961 tatggccgag ctgtatcaga cggcacaaga cgcgtttgaa gacgcgctgc tgatgggttg
    19021 cggcgaacgt cagttgcgcg attacctgct cgcgctgatt gaaggtttgg aaaatcccta
    19081 ccgcaaagtc tgaacacgcc ccggttgctg cggcacggtt tatccgtgcc gtttttgcgt
    19141 ttgtgcgcgg cttcggcttt tcagacggca tatttgacgt tatgattaaa cagttaacaa
    19201 gatttatcac aacgccgtca aaagacagac acacaacatg aacatcatcc gcgcgctcct
    19261 catcatcctc ggctgcctcg ccgccggcga aaccgccgtt ttcctagcag gcatcaaact
    19321 gcccggcagc atcgtcggca tgggcgtgct gtttgcgctt ttgcaggcag gttgggtcaa
    19381 aacgtcttgg ctacaacagc ttaccgacgc gctgatggcg aatctgacgc tgtttctcgt
    19441 gccgccctgc gtggcggtca tcagctattt ggatttgatt gccgacgatt ggttttcgat
    19501 actggtttcc gcctccgcca gcactttgtg cgtactgctg gttacaggca aggttcaccg
    19561 ctggatacgg agcattatct gatgaacgaa atcctcaggc agcccagcgt tctgcttttc
    19621 ctcacgcttg ccgtgtacgc gcttgcgatt atcgtgcgca cgcgcacggg caatatcttc
    19681 tgcaaccccg tactcgtcag cactatcgtg ctgattgcct acctgaaaat cctcgacatc
    19741 gattatgcgg tgtaccacaa cgccgcgcaa ttcattgatt tttggctgaa acccgccgtc
    19801 gtcgtgcttg ccgtgccgct ctaccaaaac cgccgtaaaa tcttcaacca gtggctgccc
    19861 gtcatcgttt cacagcttgc gggcagcgtt acgggcattg ttacggggat gtattttgcc
    19921 aaatggctgg gcgcggaacg cgaagtcgtc ctctcgctcg cgtccaaatc tgttaccaac
    19981 cccatcgcca ttgaaatcac ccgctccatc ggcggcattc ccgccattac cgccgccacc
    20041 gtcatcattg ccggtctggt cggacagatt gccggttaca aaatgctgaa gaacacagtc
    20101 gtcatgccct cgtccgtggg tatgtcgctc ggcacggctt cgcacgcgat ggggattgcc
    20161 gcctcgctcg aacgcagccg ccgcatggcg gcatacgcgg gactggggct gacgttcaac
    20221 ggcgtactga ccgcgctgat tgcgccgctg ctcatccccg ttttgggatt ttgaacccgt
    20281 ttcagacggc atttcagccc atgctgtctg aacgccgaca cactcgcaag gagaaccgtt
    20341 atggctgtca acctgaccga aaaaaccgcc gaacaactgc ccgacatcga cggcattgcc
    20401 ctctacaccg cccaagcagg cgtgaagaag cccgggcata ccgacctgac actgattgcc
    20461 gtagccgccg gcagcaccgt cggtgcagtc ttcacgacca accgtttctg tgccgcgccc
    20521 gtccacatcg ccaaatcgca ccttttcgac gaagacggcg tgcgcgccct cgtcatcaac
    20581 acgggcaacg ccaacgcggg tacgggcgca cagggcagaa tcgatgcttt ggcagtgtgt
    20641 gccgccgccg cccggcaaat cggctgcaaa ccgaaccagg tgctgccctt ctccaccggc
    20701 gtgattctcg aaccgctgcc cgcagacaaa atcatcgccg ccctgcccaa aatgcagcct
    20761 gccttctgga acgaagcggc acgcgccatc atgaccaccg acaccgtgcc caaagccgcc
    20821 tcgcgcgaag gcaaggtcgg cgacaaacac accgtccgcg ccacgggcat cgccaaaggc
    20881 tcgggcatga ttcatcccaa tatggcgacc atgctcggtt tcatcgccac cgatgccaaa
    20941 gtttcccaac ccgtcctcca actgatgacg caggaaatcg ccgacgaaac cttcaacacc
    21001 atcaccgttg acggcgacac cagcaccaac gacagcttcg tcatcatcgc caccggcaaa
    21061 aacagccaaa gcgaaatcga caacatcgcc gacccgcgtt acgcccaact caaagaattg
    21121 ttgtgcagcc tcgcgctcga actcgcccaa gccatcgtcc gcgacggcga aggtgcgacc
    21181 aagttcatca ccgtccgcgt cgaaaacgcc aaaacccgcg acgaagcccg ccaagccgcc
    21241 tacgccgtgg cacgttcgcc gctggtcaaa accgcctttt tcgcctccga ccccaacctc
    21301 ggcaggctgc tcgccgccat cggttatgcc ggcgttgtcg acctcgatac tgacctcgtg
    21361 gaaatgtatc tcgacgatat tttggttgcc gaacacggtg gacgcgccgc aagctacacc
    21421 gaagcacaag ggcaggcggt gatgtcgaag gccgaaatca ccgtccgcat caagctgcat
    21481 cgcggacaaa gtgccgccac cgtctatacc tgcgacctgt cgcacggata cgtttccatc
    21541 aacgccgact accgttcctg acccgacacg gcttcagacg gcatacataa aatgccgtct
    21601 gaaccgccgg acaacatgcc atgacctcca cattcccccg ccgcctcgcc cgcaaaatcc
    21661 gccaaacccg ccgcctgtcg cgcaaaagca tcgcctttct gttccttttg gcaggttcgg
    21721 cactcgtcgc cctgaccgcg ctgttttttg cccatcttgc cgattttgcg ctggaactga
    21781 acgccaaact ggttcaacaa tacccgtggt tcgcgtgggt cgcgcttcct ttgggtttgc
    21841 cgcttattgc gtggctcaca cgcaaattcg cccccttcac cgccggcagc ggcatcccgc
    21901 aggtcatcgc ctcactgtcg ctgccctacg gcgcacagaa aacgcggctg atccgcctcg
    21961 ggcagacgct gctgaagatt ccgctaacct ttttgggtat gctgttcggc gcgtccatcg
    22021 gacgcgaagg tccgtccgtg caggtcggcg cggcagtgat gggcgcgtgg ggcgcgtggt
    22081 gcaagaaaca cggcttggca ttcaaaggga tgcaggaaaa cgatttgatg gcggcgggcg
    22141 cggcgggcgg tttggcagcc gcgttcaacg cgccgctggc aggcgtgatt ttcgccattg
    22201 aggaactcgg gcgcggcatc atgttgcgct gggagaggca aattcttttg ggcgtgctcg
    22261 cctccggttt catacaggtc gccattcagg gcaacaaccc gtatttttcg ggtttcaacg
    22321 gcggcgtatt ggaacatatc tttctgtggg tcgcactgtc cggcctggtt tgcggcgcgg
    22381 cgggcggcct gttcggacgt ttgctctatc gcggtgcggc ggcgtttgca ccgcgcaaga
    22441 tacgcggctt catccgcaac cgtccgctgc tgctggcggc actgatgggg ctgctgctcg
    22501 ccctgctcgg cacgttctac caaggcaaaa cctacggcac cggctaccac gaagccgccc
    22561 aagccctgca cggcatctac gaagccccct tcggactcgc cgccgccaaa tggctcgcca
    22621 ccgtattcag ctattgggca ggcattccgg gcggcatttt cactccctcg ctgaccatag
    22681 gcgcggtttt gggcgagcat atcgccgcca tcgccgacat atcgcagggt gcaaacatca
    22741 tcgtcctcat ctgcatggcg gcatttctgg cgggcgcgac acaatccccg attacttccg
    22801 ccgtcgtcgt catggaaatg acgggcggac aaagcctgct gttttggatg ctgattgcct
    22861 gcattttcgc ctcgcaggtt tcgcgccagt tttcgccgcg tccgttctac cacgcatcgg
    22921 gaatgcgctt ccgccagcgc gtgcttcaag aaaccgccgc ccaaaccggc aatgcgcccg
    22981 caagaccgca aacagcaaac agcaaaacgg gaatgccgtc tgaaaattaa aacgcccccg
    23041 atcaaacgcc ggcagccgcc ttgatttgaa taccgttccg ccgccgcttg aaatttcagc
    23101 gacaatgccg tctgaacgac agaatgcggt tttcagacgg catttcccca tcccgatatt
    23161 gcctaaacaa aaccgaagcg tttgctataa ttgcactttt taccgcacac gcacgcccat
    23221 gtttcccgat ttctcccaaa ccctctccaa agaccgccac ttcctgcaat ccgccttcaa
    23281 aaatcccaac aaatacggcg gcttgtccaa agtcgaagaa aaataccgaa aatcgcacga
    23341 aatctttttg aaacgtttgg cagccttgcc caaacccgaa ttcgacaaca ccctgcccgt
    23401 tcacgaaaaa ctcgacgaaa tcaaaaaagc cattgccgag aatcaggtaa cgattatttg
    23461 cggcgaaacc ggttcgggca aaaccacgca gttgcccaag atttgcttgg aactcgggcg
    23521 tggggcggca ggattgatcg ggcataccca gccgcgccgt ttggccgcgc gctccgtagc
    23581 agagcggatt gccgaagagc tgaaatccga aatcggcagc gcggtcggct ataaagtacg
    23641 cttcaccgac cacacctcgc gcgatgcctg cgtcaagctg atgaccgacg gcatcctgct
    23701 ggcggaaacg cagaccgacc gttatctcgc cgcctacgac acgattatca tcgacgaagc
    23761 gcacgagcgc agcctgaaca tcgacttcct tttgggctat ttgaaacaac tcctgccgcg
    23821 ccgccccgat ttgaaagtca tcatcacctc ggcaacgata gacgcagaac gcttctcccg
    23881 acacttcaac ggcgcgcccg ttttagaagt gagcggacgg acgtatcccg tcgaaatcct
    23941 ctaccgaccg ctgaccggca aagacgaaga cgacgcagaa gtggagttga ccgacgcgat
    24001 tgtcgatgcg gcggacgaat tagcgcgaca cggcgaaggc gatattttgg tattcctgcc
    24061 gggcgagcgc gaaatccgcg aaactgccga agccttacgc aaatctacac tgcgccgcaa
    24121 cgacgaaatc cttcccctgt tcgcacgcct gtcgcacgcc gagcagcaca aaatcttcca
    24181 cccctcaggc gcgaaacgcc gcatcgtatt ggcaaccaac gtcgccgaaa cctcgcttac
    24241 cgtgccgggc atcaaatacg tcatcgacac cggcctcgcg cgtgttaaac gctattccgc
    24301 acgggcgaaa gtggagcagc ttcatatcga aaaaatctcc caagccgccg cccgccaacg
    24361 ctccggccgc tgcggacgcg tctccgcagg cgtatgtatc cgattgtttt cagaagaaga
    24421 tttcaacaac cgccccgaat ttaccgaccc cgaaatcgcc cgcagcaacc tcgccgccgt
    24481 catcctgcgc atggcatcgc tgaaactcgg cgacgtagcg gcattcccat ttttagaaat
    24541 gcccgattcg cggtatatta atgatgggtt tcaggtgttg ctggaattag gggcagtgga
    24601 ggccgcctga aaacaagtag gatatacact tctacctgac aaagaccaac aaacgataaa
    24661 actacggcac atctagatgc ccaacctaca acattgcaca cggtaaaaac atgaaacact
    24721 tactcatcga ttttgaaaac gtccagccgc aaaacttaga caaattacta accgaaaata
    24781 cccatatttg gctatttata ggtgtattac acaaaatgtt acctattagt ctggtgcaat
    24841 ccctactacg tttcggcgaa cgtgtccatc ttgtccagtt acaaaaaacg gggaaaaacg
    24901 cattggattt ttacctgtcc tattacctcg gacaaattac cgccacagac cccaatgccc
    24961 aaatcggcat actctcgcgt gatggaggat acgatgttct ggtcgaacat attttgaaaa
    25021 accaccaggc gaagggtatc gtgcgcctag ccaatataga tgaagtacaa catcagaaaa
    25081 ttactaccga accgccgtca gcattgctgg aaaacactcc tcagcctgaa accaccctca
    25141 aaccacagca accattaact tcctatttcc aagcagccct aactgcactg cgccgccccg
    25201 acgctttccg cccctgccgc ctgcataacc tgcgacaaaa tctgcgtaag catattttga
    25261 gtgatttgtt taaagaaaaa accgatgaag aatgcgaaat aaccactgct aacgttatca
    25321 ataaactcaa agcacaaaac ttcatcagca ttgatgaaca ggaaaccgtt tcctaccatc
    25381 tcagtgataa tgatttgtta caaagaatcc aacgccatat tttaagccaa cgtcccaaaa
    25441 cctacgctga ttttcaagcc gtcgtgcaaa accgagcaga tgcacttcac ttaacagtcg
    25501 gtaccaacga cattcaatcc tttgcgcgac atttgcgcga ccaaaacctg atccgccaaa
    25561 acaatgggga aattgaatat gcaccgttta ctgaacctaa accacagcca acgcccaagc
    25621 agcctaaaaa aaccgcatgg gaacctgatg aaattatttg gaaaaaagtg attgccgcgt
    25681 tatcgttaaa gaaccgtcct aataaaacca aaactttacg caatacaatc caggcactca
    25741 caaaatccaa tgcacaagaa actgacaaac tgctacaaca tttacaagat acccaagtcc
    25801 tacgtattga cggtactaaa attgtgtata tcaagtagga tgggcattta tgcctgacct
    25861 acaaaaccaa aaacaaccta ccacccttaa tcaactccac aaaccctctt cagacaacct
    25921 cgttttttga aaaacaatct gtaaacagat aactgctgaa gaataccgtt gccgagcccc
    25981 aaaacctgcc tgcaactttt attgtgaact tcccattatg aaaaaatccc ttttcgttct
    26041 ctttctgtat tcatccctac ttaccgccag cgaaatcgcc tatcgctttg tattcggaat
    26101 tgaaacctta ccggctgcaa aaatggcaga aacgtttgcg ctgacattta tgattgctgc
    26161 gctgtatctg tttgcgcgtt ataaggcttc gcggctgctg attgcggtgt ttttcgcgtt
    26221 cagcattatt gccaacaatg tacattatgc ggtttatcaa agttggatga cgggcatcaa
    26281 ttattggctg atgctgaaag agattaccga agtcggcagt gcgggcgcgt cgatgttgga
    26341 taagttgtgg ctgcctgcgt tgtggggcgt gttggaagtc atgttgtttt gcagccttgc
    26401 caagttccgc cgtaagacgc atttttctgc cgatatactg tttgccttcc taatgctgat
    26461 gattttcgtg cgttcgttcg acacgaaaca agagcacggt atttcgccca aaccgacata
    26521 cagccgcatc aaagccaatt atttcagctt cggttatttt gtcggacgcg tgttgccgta
    26581 tcagttgttt gatttaagca ggattcccgc ctttaagcag cctgctccaa gcaaaatcgg
    26641 gcagggcagt gttcaaaata tcgtcctgat tatgggcgaa agcgaaagcg cggcgcattt
    26701 gaagctgttt ggctacggac gcgaaacttc gccgttttta acccggctgt cgcaagccga
    26761 ttttaagccg attgtgaaac aaagttattc cgcaggcttt atgactgcag tgtccctgcc
    26821 cagttttttc aatgcgatac cgcacgccaa cggcttggaa caaatcagcg gcggcg
//
LOCUS       DAWGNT010000008        26297 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.008, whole genome shotgun sequence.
ACCESSION   DAWGNT010000008 DAWGNT010000000
VERSION     DAWGNT010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26297
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.008"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            52..1005
                     /locus_tag="WHR98_000220"
     CDS             52..1005
                     /locus_tag="WHR98_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEZ2306958.1"
                     /translation="MTHTVHLHLEETDNLALQRLCGSFDNNLDLLAKALDIHISRRFE
                     HFTFNGAFAHAGKRALLKLLETAQTRDLNDGDIRLAAVEAQTEDAGHQEKNHDHAYYF
                     RTKRGSIGGRTPRQNGYIRALLNHDIVFGLGPAGTGKTYLAVAAAVDAMEKHQVERII
                     LVRPAVEAGEKLGFLPGDLTQKVDPYLRPLYDALYDLMGFDRVTKLIEKGLIEIAPLA
                     YMRGRTLNGAYIILDEAQNTTPEQMKMFLTRIGFGAKAVITGDTSQIDLPKNIKSGLK
                     DAREKLHNVEGLYFHTFTGEDVVRHPLVQKIVEAYESAEHD"
     gene            complement(1122..1445)
                     /locus_tag="WHR98_000221"
     CDS             complement(1122..1445)
                     /locus_tag="WHR98_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306959.1"
                     /translation="MKKCILGILTACAAMPAFADRIGDLEARLAQLEHRVAVLESGGN
                     TVKIDLFGSNSTMYVCSVTPFQKTFEASDRNEGVARQKVRQACNRETSAMFCEDEAIR
                     CRKFD"
     gene            complement(1618..2979)
                     /locus_tag="WHR98_000222"
     CDS             complement(1618..2979)
                     /locus_tag="WHR98_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HEZ2306960.1"
                     /translation="MLKKWLNKMLPSGRSSKKAESKTVIPAERHNIRAEMLSFAAENV
                     IRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIV
                     HVMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMRRDFTCNALYYDPEKE
                     EILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETTAPIAE
                     SICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIAGK
                     MTVLALKNTDERLRADKSVSVGFVLAALMWPELERHWKSNLQQGLKPVPALSDAINTM
                     RGTVERGWGVPQRFSATMREIWMFQPQFENRKGARPHKLFAQARFRAAYDFLLLRAET
                     GNADRALAEWWTAFQTASTEQRSEMTKNEAAARHEKNEGQAKKRRRRRRKPKPKVVGT
                     DWE"
     gene            complement(3277..4977)
                     /gene="recJ"
                     /locus_tag="WHR98_000223"
     CDS             complement(3277..4977)
                     /gene="recJ"
                     /locus_tag="WHR98_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEZ2306961.1"
                     /translation="MSVKIQTRSVNTNVFNHLLTAGADPLIARLCASRGVQSPAELDD
                     KLAALLPYQTLTNCESAAGRLADAVERQEKILIVADYDADGATACSVGMSGLAAMGAK
                     VDFLVPNRFEHGYGLTPELAEIAAEQGVDLLITVDNGIASIAGVARAQELGLDVIVTD
                     HHLPAETVPDCIIVNPNQKGCGFQSKSLAGVGVIFYVLMALRAELRRRDYFSDGIKEP
                     NLGDLLDLVALGTVADVVTLDHNNRILVSQGLKRMRSGKMRPGIRALFEVARRDWRKA
                     QPFDMGFALGPRINAAGRLDDMSVGIACLLARDDAEAQELAAQLNNLNIERREIEQSM
                     LQDALNAFPETLPSGQTTLVAYRDDFHQGVVGIVASRLKDRFYRPTIVFAPADNGEVR
                     GSGRSIPNLHLRDALDLVSKRHPDLILKFGGHAMAAGLSILEHNIPAFQTAFEEAVRE
                     MVCEDDLSQTFITDGSLPARDITLEQAQNLAKHVWGQGFAPPSFTDEFHVVRQQPLGA
                     EGKHKKAWLQKDGCEFEAMFWRCSEDIPEYIRTVYRPVANEWRNNLELQLYIDYWEAA
                     "
     gene            complement(5046..5762)
                     /locus_tag="WHR98_000224"
     CDS             complement(5046..5762)
                     /locus_tag="WHR98_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306962.1"
                     /translation="MLFRKTTAAVLAATLMLNGCTAMMWGMNDPFSQTTAYKHVDKDQ
                     IRAFGVVAKDNAQLEKGSLVMMGGKYWFVVNPEDSAKLTGILKIGLDKPFQIVEDTPS
                     YARYQALPVKLESPASQNFSTEGLCLRYDTDRPADIAKLKQLEFEAVELDNRTIYTRC
                     VSAKGKYYATPQKLNADYHFEQSVPADIYYTVTKKHTDKSKLFENIAYTPTTLILDAV
                     GAVLALPVAALIAATNSSDK"
     gene            complement(5809..6378)
                     /locus_tag="WHR98_000225"
     CDS             complement(5809..6378)
                     /locus_tag="WHR98_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HEZ2306963.1"
                     /translation="MPSERGGILLKCAIGKNSRTKMFEQEDEWVSKTQMKKQMNGLQD
                     LGMELTKLSSDTLKKIGLDEDLYEAVVTYKKITSNGALKRQAQFIGRLMRDTDPAPIE
                     AFLAKLRGDDAAHNAFLQRVEQARVRLLADDGALTQFMSDFPHADAGKLRTLIRNTKK
                     EQEQNKPPKNFRALFQELKTVMENGDAEI"
     gene            6469..7800
                     /gene="pmbA"
                     /locus_tag="WHR98_000226"
     CDS             6469..7800
                     /gene="pmbA"
                     /locus_tag="WHR98_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HEZ2306964.1"
                     /translation="MLFNHTASELLDLCRRTLDLAKATGATAAEADFSESLGQSVSVR
                     LGEIEQIEFQQDKSLDITVYVGKRKGRAGTADFSEQALRDTVRAAADIARHTAEDGCA
                     GLADACLMAKHIGDPDLYHEWDLDTEAAVELAKQCEQAALNEDERIENSEGAAVQTGH
                     YQYVYGNTHGFAAHRQGTHHSISCSVVAADENGMQRDYWYDSACRHPDMDSPETIGQT
                     AARRTLRRLGSRSIPTGSYPVLFDTTVSGGLIGHLVGALSGGALYRQSSFLIDSIGKK
                     VLPDFLNLREEPHIPRSFRSSYFDAEGVATAPRFVIQNGIVKGYFLSSYSARKLGMQT
                     TGNAGGAHNLYLNHTHETQSDLLKEMGTGLLVTELMGQGANTITGDYSRGAAGFWVEN
                     GVIAYPVHEITVAGRLQDMYRDIVGVADDALRRSSNKIGSILIAGMTVAGS"
     gene            complement(8097..8300)
                     /locus_tag="WHR98_000227"
     CDS             complement(8097..8300)
                     /locus_tag="WHR98_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEZ2306965.1"
                     /translation="MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKE
                     GQRVSFDVTTGPKGKQAANIQAA"
     gene            8543..8845
                     /gene="clpS"
                     /locus_tag="WHR98_000228"
     CDS             8543..8845
                     /gene="clpS"
                     /locus_tag="WHR98_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HEZ2306966.1"
                     /translation="MTAQHQSDTLLHRLNTLPPKRYGVFLLNDDYTTMEFVVEILTEI
                     FMLGQEQAVAVMLLVHHEGKGLCGTYTRDIAQTKQQQVMQRAKAEGHPLQCIVEEI"
     gene            8847..11138
                     /gene="clpA"
                     /locus_tag="WHR98_000229"
     CDS             8847..11138
                     /gene="clpA"
                     /locus_tag="WHR98_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HEZ2306967.1"
                     /translation="MLAPELEQILQQLYREARKAHYEFISLEHLLLVLIEEDASVPNV
                     LKLCGADLKVVSEQLAASVAENTPLIPEHLLDTVETRPTLGFQRVMQRAMVHTQSAGK
                     AAVEPLDVLVALMSETDSHTVYFLKLQSVTRFEVLRCIAHGSPDEDEDDGNYSSDGMD
                     DDNENRTKPGKNPLSAYTVNLNAEVKAGRIDPLIGRKHEMERLVQILCRRRKNNPLLV
                     GEAGVGKTALAEGLAHQIVNGGIPDALKDAEVYALDMGSLLAGTKYRGDFEARVKSVL
                     KQLEKIPHAILFIDEIHTIIGAGSTSGGTMDASNLLKPALAKGSLRCIGATTYDEYRT
                     IFDKDHALSRRFQKIDVVEPTVSETVQILRGLKPMFEAFHQVRYTQGALEAAAELSAR
                     YINERFLPDKAIDVMDEAGAAQRILPKSKQKKVIGKAQIETVIAKVARIPEKTVSHDD
                     KQVLQFLGRDLKNMVYGQENAIDALVAAVKMSRSGLALPDKPIGSFLFSGPTGVGKTE
                     AAKQLAYSLGVPLQRFDMSEYMERHAVSRLIGAPPGYVGFEQGGLLTEAINKQPHCVL
                     LLDEIEKAHPDIFNVLLQVMDAGKLTDNNGKSADFRNVILIMTTNAGAESLSRPSLGF
                     TAKRERGDEMQAINKLFTPEFRNRLDAIIPFAPLSEPVITKVVDKFLLQLEHRLLDKK
                     VEAEFTSALHKYLAEKGFDPQMGARPMHRLIQEKIRKPLADELLFGKLSDGGFVRIDW
                     DAAKEEAVLKFKKSKVKIKTASA"
     gene            complement(11177..14275)
                     /locus_tag="WHR98_000230"
     CDS             complement(11177..14275)
                     /locus_tag="WHR98_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEZ2306968.1"
                     /translation="MNLETKPIAETPNFIVLDQYEKIEQSGSYQSENRLEAELIADLQ
                     NQGYEYRKDLNSQSRLLENLRAQLQRLNDVAFSDGEWARFLTEYLDRPSENITDKTRK
                     IHDDHIYDFAFDDGRLKNIYLLDKKNLARNHVQLINQFEQTGTHANRYDVTVLVNGLP
                     LVQIELKKRGVAVREAFNQVHRYSKESFNSENSLFKFLQIFVISNGTDTRYFANTTKR
                     DKNSFDFTMNWARSDNHPIKDLKDFTATFLQKSVLLSVLLHYSVFDANNTLLIMRPYQ
                     IAAAERILWKINSSALAKNWSKPESGGYVWHTTGSGKTLTSFKAARLATESAFIDKVF
                     FVVDRKDLDYQTMKEYQRFSPDSVNGSESTTGLKRNLEKDDNKIIVTTIQKLNNLMKS
                     EDNLPVYHQRVVFIFDECHRSQFGEAQKNLKKKFKKFCQFGFTGTPIFPENALGAETT
                     AGVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKAVEAEQDEKKLSAAENRQALL
                     HPERIREITQYILNQFRQKTHRLNAGGKGFNAMFAVSSVDAAKCYYEAFKTQQAGSLH
                     PLKVATIFSFAANEEQNAVGEIVDETFEPEAMDSSAKEFLQAAINDYNACFKTNFGTD
                     SKAFQNYYRDLAKRVKNQEVDLLIVVGMFLTGFDAPTLNTLFVDKNLRYHGLMQAFSR
                     TNRIYDATKTFGNIVCFRDLEQATIDAITLFGDKNTKNVVLEKSYEEYMNGYTDSQTG
                     EARRGYLDVAKELRQRFPDPDKIETEKDKKDFAKLFGEYLRAENVLQNYDEFAALREL
                     QSVDAADEDAMKAFQEKYYLSDEDVQEMRQVPMPSERAVQDYRSAYNDIRDWLRRQKA
                     GEQKEQSKIDWDDVVFEVDLLKSQEINLDYILQLVFEHHKKIKGKAELVEEIRRIIRA
                     SIGHRAKEGLIVDFINDTDLDKVPDVPAILETFYTYGQEVMRHEAAGLIAAEGLNETA
                     AKRYLTGSLKRGYASENGTELTETLPKMSPLNPQYLTKKQSVFQKIAAFVEKFAGIGT
                     DI"
     gene            complement(14705..15277)
                     /locus_tag="WHR98_000231"
     CDS             complement(14705..15277)
                     /locus_tag="WHR98_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEZ2306969.1"
                     /translation="MGEVFDLKNGYTPSKSNKEYWENGSIPWFRMEDIRENGRILDNS
                     LQHISKSAVKGGKLFPANSIIMATSATIGEHALITVPFLANQRFTSLSLKPEFADKLS
                     IYFLYYYCFNLSEWCKKNTTTSSFASVDMNGFKRFPIPIPPLPEQEKIVAILDKFDTL
                     THSISEGLPHEIALRRKQYEYYREQLLAFR"
     gene            complement(15318..15914)
                     /locus_tag="WHR98_000232"
     CDS             complement(15318..15914)
                     /locus_tag="WHR98_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEZ2306970.1"
                     /translation="MDMQSKAKKLIEMIQTAPVEWKPLGGENGIAIIKTGQAVSKQKI
                     SNNIGSYPVINSGKEPLGYIDEWNTENDPIGITTRGAGVGSITWQEGRYFRGNLNYAV
                     TIKNRTELDVRFLYHILLEFEQEIHALCTFTGIPALNASNLKKLLIPIPPLETQQKIV
                     KILDKFTELEAELALRKRQYRYYRDFLLDFDNQIGGDS"
     gene            complement(16080..17090)
                     /locus_tag="WHR98_000233"
     CDS             complement(16080..17090)
                     /locus_tag="WHR98_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HEZ2306971.1"
                     /translation="MSIILYTANDGTAQFALQEFGGQLWLTQADMAELYQTTKQNISK
                     HIKTILAEQELEEKATVNFQLTVQNENGRKVNRKIAHYSLPMIIAVGYRVRSARGIQF
                     RQWATERLDEYLTKGFAIDDERLKGTGGGDYWKELLNRIRDIRSSEKALYRQVLDLYA
                     TSQDYNPKSSESQTFFAAVQNKLHYAASRQTAAELIYSRADSSKDFMGLTTFQGAIPT
                     LNEAKIAKNYLTEDELFRLNRLVSAFFDLAEIKAQEQSPMYMRDWIAELDKFSGLYGQ
                     GTLQGAGSISRKQAEQKAEREYRAYEARILSPVEQAYLESVKALEKTAVQQIKQKKDR
                     TK"
     gene            complement(17087..18637)
                     /locus_tag="WHR98_000234"
     CDS             complement(17087..18637)
                     /locus_tag="WHR98_000234"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HEZ2306972.1"
                     /translation="MMTEMQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFI
                     SENFTDYMQAGDSSIDYAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNE
                     ELNTKLKEIFTAIESSASGYPSEQDIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGV
                     AELDFGSFEDHHIDLFGDAYEYLISNYAANAGKSGGEFFTPQSVSVSKLIARLAVHGQ
                     EKVNKIYDPACGSGSLLLQAKKQFDEHIIEEGFFGQEINHTTYNLARMNMFLHNVNYN
                     KFHIELGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPTLINDDRFAPAGVLAPKS
                     KADFAFILHALNYLSGRGRAAIVSFPGIFYRGGAEQKIRQYLVEGNYVETVIALAPNL
                     FYGTGIAVNILVLSKHKDNTDIQFIDAGGFFKKETNNNVLTEEHIAEIVKLFADKADV
                     PHIAQNAAQQTVKDNGYNLAVSSYVEPEDTREIIDIKQLNAEISETVAKIERLRREID
                     EVIAEIEA"
     gene            complement(18710..19714)
                     /gene="rfaD"
                     /locus_tag="WHR98_000235"
     CDS             complement(18710..19714)
                     /gene="rfaD"
                     /locus_tag="WHR98_000235"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEZ2306973.1"
                     /translation="MTIIVTGAAGFIGSNIVKALNQRGITDIVAVDNLSKGEKFKNLA
                     ECEIAHYLDKHEFIRQVREHILPYQNIEAVFHQGACSDTMNHDGLYMMENNYQYTLDL
                     LDWCQDERIPFLYASSAAVYGKGEIFREERELEKPLNVYGYSKFLFDQVLRRRMKEGL
                     TAQVVGFRYFNVYGQHEQHKGRMASVAFHHFHQYREHGYVNLFGSNDGYGNGEQTRDF
                     VSVEDVAKVNLYFFDHPELSGIYNLGTGRSQQFNELAAATVNACRAAEGKPEMSLKEL
                     VEEEFIRYIPFPDALKGKYQSFTQADITKLREAGYKEEFFDVKSGVDRYVKWMLENLA
                     "
     gene            complement(19843..20874)
                     /locus_tag="WHR98_000236"
     CDS             complement(19843..20874)
                     /locus_tag="WHR98_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEZ2306974.1"
                     /translation="MPDFQRITIENIEYFIVDSIQNLRAEDSFIHRNNKLSVFGGNGE
                     ARKYVGSYIDDSGRKLSTFFEYENWGITETKNGRRVEYPFIQKNCFFNKKNLQRYLVD
                     AKVEYHKQEQKYHHDISRFYDDYVLSINNLPTENIFFSIHDVSDHLENSKGYRRGYIR
                     SEDDIWSIWRKIVLPKISYLSILKLLPVKDIEDSEPLFYFRIFLDYQFRSIVHPQLLS
                     REKLEIPASEFNQFVEQEIIKQKSRKGQQKYRKDVINHMPQCPFTLITDEILLRASHI
                     KPYMVCITEKNEKEALDYLNGLALTPTYDWLFDQGYITFLDDGRLICGTRLSRYTWEK
                     LNINPNAKN"
     gene            complement(20876..22111)
                     /gene="dcm"
                     /locus_tag="WHR98_000237"
     CDS             complement(20876..22111)
                     /gene="dcm"
                     /locus_tag="WHR98_000237"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HEZ2306975.1"
                     /translation="MTISTMAQTHDTRLQKTLLFPSQQGWKSKTFLKPDSHIRLATVF
                     SGIGAVEQAFHRLNLNHTIVFAGDIDPYVKKSYLGNYKLNEDFWHNDITQFDARKFRN
                     QVDILVGGSPCQAFSMVGKRAGLEDTRGTLFYEFARVVDEVQPKIFIYENVKGLLNHD
                     NGKTWKVVKSVFYSLGYDLYFQIMNSKDYGIPQHRERIFVVGFHTPPINGFQFPEKIE
                     LEHTMQDFLEDYTDSKYFLREKGVKFVTSSKNRQKRYTQINGEIALCQKANQQFNWHG
                     DFIFQAARESEFDDFIFDVNNVEEKYYLSEKIKNYVLAGGTKNFKTSTETDLPVARPL
                     LQTMHKMHRAGVDNYVTHNRGRIRKLTPRECLRLMGFRDDFKILVSDTQMYRQAGNSI
                     VVDVLIAILKQMDITLYGE"
     gene            complement(22148..23119)
                     /gene="hldA"
                     /locus_tag="WHR98_000238"
     CDS             complement(22148..23119)
                     /gene="hldA"
                     /locus_tag="WHR98_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose synthase"
                     /protein_id="HEZ2306976.1"
                     /translation="MSAKFQQETLKSRFAQAKVLVVGDVMLDRYWFGDVSRISPEAPV
                     PVAKIGRIDQRAGGAANVARNIASLGGRAGLLSVTGNDEAADALDALMVQDGVASYLM
                     RDKQIATTVKLRVVARNQQLIRLDFEEHPNCEVLEQIKQKYREILPEYDAIIFSDYGK
                     GGLSHISDMIDWAKHAGKTVLIDPKGDDYEKYVGATLITPNRAELKEVVGSWKNESEL
                     TEKAQNLRRHLDLTAVLLTRSEEGMTLFSEGEPIYQPTRAQEVYDVSGAGDTVIAGMG
                     LGLAAGCTMPEAMYLANTAAGVVVAKLGTAVCSFAELIKALSGQSTM"
     gene            complement(23175..23915)
                     /gene="pyrF"
                     /locus_tag="WHR98_000239"
     CDS             complement(23175..23915)
                     /gene="pyrF"
                     /locus_tag="WHR98_000239"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003756133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEZ2306977.1"
                     /translation="MNPLISDFQTPQQRTPVIVALDFANEKDTLGFVRNLDPTLCQIK
                     IGKELFTATGRNLAESLINQGFKLFLDLKYHDIPHTVAQACKVAADMGVWMVDMHASG
                     GRRMMEAAAEAVAGYQTKPLLIGVTVLTSMEQSDLAEIGLNIAPEEQVIRLAKLTQSA
                     GLEGVVCSAQEAASLRRELGRDFVLVTPGIRLDVAGNNDDQRRIMTPAEALAAGSTYL
                     VMGRPVTQAADPVAVLREVNRVANLEAN"
     gene            complement(24441..25088)
                     /gene="adk"
                     /locus_tag="WHR98_000240"
     CDS             complement(24441..25088)
                     /gene="adk"
                     /locus_tag="WHR98_000240"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEZ2306978.1"
                     /translation="MKALLLGAPGAGKGTQAQFITAAFGIPQISTGDMLRAAIKAGTP
                     LGLEAKKIIDEGGLVRDDIIIGMVKERIAQDDCKNGFLFDGFPRTLAQAEAMVEAGVD
                     LDAVVEIDVPDSVIVDRMSGRRVHLASGRTYHVTYNPPKVEGKDDVTGEDLIQRDDDK
                     EETVKKRLAVYHEQTEVLVDFYSKLEGEHAPKYIKVDGTQPVEAVKAEVLGALGK"
     gene            25303..26142
                     /gene="htpX"
                     /locus_tag="WHR98_000241"
     CDS             25303..26142
                     /gene="htpX"
                     /locus_tag="WHR98_000241"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HEZ2306979.1"
                     /translation="MKRIFLFLATNIAVLVVINIVLAVLGINSRGGTGSLLAYSAVVG
                     FTGSIISLLMSKFIAKQSVGAEVIDTPRTEEEAWLLNTVEAQARQWNLKTPEVAIYHS
                     PEPNAFATGASRNSSLIAVSTGLLDHMTRDEVEAVLAHEMAHVGNGDMVTLTLIQGVV
                     NTFVVFLSRIIANLIARNNDGSQSQGTYFLVSMVFQILFGFLASLIVMWFSRQREYRA
                     DAGAAKLVGAPKMISALQRLKGNPVDLPEEMNAMGIAGDTRDSLLSTHPSLDNRIARL
                     KSL"
BASE COUNT         6115 a         6862 c         6442 g         6878 t
ORIGIN      
        1 taatccacta tagattaaaa tcacacaata tccaactatt cggaccttca tatgacacat
       61 accgtccacc tgcatttaga agaaaccgac aacttggcgt tgcagcgtct gtgcggttct
      121 tttgacaaca accttgattt acttgctaaa gcactcgata tccacatcag ccgccgtttt
      181 gaacatttca ctttcaacgg cgcatttgca cacgccggca aacgcgcact gctcaaactc
      241 ttggaaacgg cgcagacgcg cgacctaaac gacggcgaca tcaggcttgc cgccgtcgaa
      301 gcccaaaccg aagatgccgg tcatcaagaa aaaaaccatg accacgccta ttatttccgc
      361 accaagcgcg gcagcatcgg cggcagaacg ccacggcaga acggctatat ccgcgcccta
      421 ctcaaccacg acatcgtatt cggtctcggg ccggcaggta cgggcaaaac ctatctcgca
      481 gtcgccgccg ccgtcgatgc gatggaaaaa caccaagtcg aacgcatcat tttagtccgg
      541 cctgccgtcg aagccggtga gaaactgggt tttctgcccg gtgacctgac ccagaaagtc
      601 gatccctacc ttcgtccgct ttatgatgcc ctctatgacc tgatgggctt tgaccgtgta
      661 accaagctga ttgaaaaagg tctgattgag attgccccgc tcgcctatat gcgcggcagg
      721 acgctcaacg gcgcatacat catcctcgac gaagcgcaaa acaccacgcc cgaacaaatg
      781 aaaatgttcc tgacccgcat cggcttcggc gcgaaagccg tcattaccgg cgacaccagc
      841 caaatcgacc tgcccaaaaa catcaaatcg ggattaaaag atgcgcgtga gaaactgcac
      901 aacgtggaag ggctgtattt ccacaccttt accggcgaag acgttgtccg gcatcctttg
      961 gtgcaaaaaa tcgtcgaagc ctacgaatcg gcagaacacg actgacattc caatgccgtc
     1021 tgaaacccga tgcatggaaa atcgggcaga gaaaaacaga tacggaagcc aaactccgta
     1081 tccgtatccg tatccgtttc tttatccgtc caaccgatac atcaatcgaa ttttctgcat
     1141 cggattgcct catcttcgca aaacattgcc gaagtttcgc ggttgcacgc ctgacgcact
     1201 ttctgccgcg ccacgccttc attccgatcg cttgcctcaa acgtcttctg aaaaggcgta
     1261 acgctgcata catacatggt ggaatttgaa ccgaaaaggt cgattttgac ggtattgccg
     1321 ccgctttcca atacggcgac acggtgttcc aactgcgcca gacgtgcttc caaatcgccg
     1381 attctgtcgg caaatgcagg catggcggca cacgcggtca aaatgcccaa aatacatttt
     1441 ttcatcaatt tttccttgtt gcttgaaccc tgcccacccg gacatccttt ttccgagagg
     1501 cagggttaga ctttatttac ggggatgaat ccccttacaa atcaggataa tgcatagaac
     1561 ggcactttat gcttcatccc atgtgttgaa acttcattgc tccttgtctg ttgaccctta
     1621 ttcccaatcc gttcccacaa ccttcggctt gggtttgcgc ctgcgacggc ggcgtttttt
     1681 cgcctgtcct tcgttttttt cgtgtcgggc ggcggcttcg tttttggtca tctccgaccg
     1741 ctgttccgtc gatgccgtct gaaacgccgt ccaccactcg gcaagggcgc ggtccgcatt
     1801 gccggtttcg gcgcgcaaga gcaggaaatc ataggcggca cggaaacgcg cctgtgcaaa
     1861 cagtttgtgc ggccttgcgc ctttgcggtt ttcaaactgc ggctggaaca tccaaatttc
     1921 gcgcatcgtg gcggaaaagc gttgcggcac gccccaaccg cgttcgacgg ttccgcgcat
     1981 cgtattgatt gcatcggaca gggcgggcac gggtttcaaa ccctgttgca gattgctttt
     2041 ccaatggcgt tccaactcgg gccacatcag agccgccaat acaaaaccga ccgaaaccga
     2101 tttgtcggca cgcagccgct catcggtatt tttcagggca agcaccgtca tttttccggc
     2161 gatgccgtct gaaacgcgca aggcattgag cagcggatgg atgtcgtccg gtatgtcaaa
     2221 tccgttcaaa cgtttcagac actcgcgcgc gtgccctgaa aacagcagtt tcatgatttc
     2281 gtcaaacagc cgcgctaccg gttcgtgctt cagacggcat atcgattcgg caatcggtgc
     2341 ggtggtttct tccgacagat caaatcccaa tttgcccgac aggcggatgg cgcgcaaaat
     2401 cctgacaggg tcttcctgat agcgttcggc ggcatcgcca atcataacca gcctgcgggc
     2461 ggcaacatcg gcaattccgt tgtggaaatc caaaatctct tctttttcag gatcgtaata
     2521 caaggcattg caggtaaaat cgcgccgcat cgcatcttct tcgatgctgc cgtaggtgtt
     2581 gtccttcata atcctgccgt gcgcgttctg atgaaccttt gcaccgccgc gaaacgtcgt
     2641 tacttcgata atctctgcac cgttcatcac atggacaatc tgaaaacgcc tgccgatgat
     2701 gcggctgcgg cggaagagtt tgtgcacctg ttcgggcgtg gcatcggttg cgacatcgaa
     2761 atctttgggt tcgatgccga gcagcaggtc cctgaccgcg ccgccgacca cataagcctg
     2821 aaaccccgcc cctttcagac ggcgtatgac gttttcggcg gcaaagctca acatttcggc
     2881 acggatgttg tgtctttcgg caggaatgac cgttttactt tccgcttttt tactgctccg
     2941 accggaaggc agcatcttat tcaaccattt tttcagcata aatattctga cccgaagagc
     3001 ggcatctcca cgggcaaccg tgttcagacg gcatcgggcg caggtttgca agatgccgta
     3061 accataaaca aaaggcgtag aaactacgcc gtccgaatca cgccgccctc gcggcggcaa
     3121 cgcgtcatta taacagattg ccctccaaaa aaatcagacc ctgcttttgt ggcagagtct
     3181 gaaatttgat gcgccttctc cgattgggaa cattcccgtc gtacaaacag gcaaatgaag
     3241 gaacagaaat cacattcaaa cagtgttccg ccgcctctac gcggcttccc agtaatcgat
     3301 atacagctgc aattcgagat tgttgcgcca ttcgttggca acggggcggt aaaccgtgcg
     3361 gatgtattcg ggaatgtctt cgctgcaccg ccagaacatt gcttcaaatt cgcagccgtc
     3421 tttttgcagc cacgcttttt tgtgtttgcc ttccgcgccc aaaggctgct ggcggacgac
     3481 gtggaactcg tcggtaaagc tcggcggcgc gaagccctgc ccccaaacgt gtttagcaag
     3541 gttttgcgcc tgttccagcg taatgtcgcg tgcaggcagg ctgccgtcgg tgatgaaggt
     3601 ttgcgacaaa tcgtcttcgc acaccatttc gcgcacggct tcttcaaagg ccgtctgaaa
     3661 cgcgggaatg ttgtgttcga gtatgctcaa gcccgccgcc atcgcgtgtc cgccgaattt
     3721 caaaatcaaa tcgggatggc gtttggacac caagtccaaa gcatcgcgca agtgaagatt
     3781 gggaatggaa cgccccgaac cgcgcacttc accgttgtcg gcaggcgcaa acacgatggt
     3841 cggacgataa aaacggtctt tgaggcggct ggcaacgatg ccgaccacgc cttgatggaa
     3901 gtcgtcgcga tacgccacca aagtcgtctg acctgaaggc agggtttcag gaaaagcatt
     3961 cagcgcgtct tgcagcatag actgctcgat ttcgcgacgc tcgatattga ggttgtttaa
     4021 ctgagccgcc agttcctgag cttcggcatc atctcgcgcc aacaggcagg cgatgccgac
     4081 cgacatatcg tccagccgtc cggcggcgtt gatgcgcggg cccaacgcaa agcccatatc
     4141 aaacggctgg gccttgcgcc aatcgcgccg cgccacttca aacaaggcgc ggatgccggg
     4201 gcgcattttg cccgaacgca tccgtttcaa accttgcgac acgaggatac ggttgttgtg
     4261 gtctagagta acgacgtcgg cgacggtacc gagtgcgacc aaatccaaaa ggtcgcccag
     4321 attcggctct ttgatgccgt ctgaaaaata atcgcggcgg cgcagttcgg cacgcaaagc
     4381 catcaacaca taaaaaatca cgcccacgcc cgccaagctt ttgctttgga aaccgcagcc
     4441 tttttggttc ggattgacga tgatgcagtc tggcacggtc tcggcaggca gatggtggtc
     4501 ggttacaatc acatccaaac ccaattcctg cgcacgcgcc acgcctgcga tgctggcgat
     4561 accgttatcg accgtaatca gcaaatccac accttgctct gccgcgattt cagccagctc
     4621 gggcgttaag ccgtagccgt gttcaaagcg gttgggtacg aggaaatcca ctttagcccc
     4681 catcgccgcc aaaccgctca taccgacgga acacgccgtc gcgccgtcgg catcgtagtc
     4741 ggcgacaatc aggatttttt cctgacgctc aaccgcatcc gccaaacggc cggcggcgga
     4801 ttcgcagttt gtcaacgttt gatacggcaa aagcgcagca agcttgtcgt ccaattcggc
     4861 aggactttgc acaccgcgcg aggcacaaag ccgggcgatt aaaggatcgg caccggcggt
     4921 gagcaaatga ttaaaaacgt tggtattgac ggatcgggtt tggattttga cggacatagc
     4981 gtggaacttt acagtgcgga tgtgtttgaa atgccgtctg aaggcttttc agacggcatt
     5041 gccgttcatt tgtctgagga attcgtggct gcaatcaacg ccgcgacagg caaggccagc
     5101 accgcgccca ccgcatccag tatcaacgtg gtgggcgtat atgcaatatt ttcaaacaac
     5161 ttggatttgt cggtatgttt tttcgtaacc gtgtaataaa tatcggcagg cacactttgc
     5221 tcaaaatgat aatcggcgtt cagtttttgc ggtgtggcgt agtatttgcc tttggcggag
     5281 acgcagcgcg tgtaaatggt ccgattgtcg agttcgaccg cttcaaactc aagctgtttc
     5341 agcttggcga tgtcggcagg tctgtcggta tcgtagcgca ggcaaaggcc ttcggtactg
     5401 aaattctggc tggcgggcga ttcgagtttg accggcaggg cttggtagcg ggcatagctc
     5461 ggggtatcct caactatttg gaagggcttg tctaacccaa tcttcaaaat gcccgtcagc
     5521 ttcgccgaat cttcgggatt gacgacgaac cagtatttcc cgcccatcat caccaaactg
     5581 cccttttcca attgggcatt gtctttggca accacaccga aggcgcggat ttggtctttg
     5641 tcaacgtgtt tataggcggt cgtttggctg aacgggtcgt tcatgcccca catcattgcc
     5701 gtacagccat tcagcatcaa ggttgccgcc aaaacggcgg cggtcgtttt acggaacaac
     5761 attttatcct ccaatctaaa taacggcgga tgtcgtctga aaatatgcct aaatttccgc
     5821 gtccccgttt tccatcacgg ttttcaattc ttgaaacagc gcgcggaagt ttttcggcgg
     5881 tttgttttgc tcctgctctt ttttggtgtt gcggatcaag gtacgcaatt taccggcgtc
     5941 cgcatgcgga aaatccgaca taaactgcgt caacgcgccg tcgtctgcca acagccgtac
     6001 gcgcgcctgt tccacgcgtt gcaaaaaggc gttgtgcgcc gcatcgtcgc cgcgcagctt
     6061 ggcaagaaac gcctcgatgg gcgcgggatc cgtgtcgcgc atcagcctgc cgataaattg
     6121 cgcctgccgc ttgagcgcgc cgttggacgt aattttttta taggtaacga cggcttcgta
     6181 caaatcttcg tccaagccga tttttttcag cgtgtcgctt gagagcttgg tcagctccat
     6241 acccaaatcc tgcaaaccgt tcatctgctt tttcatttgg gttttgctga cccattcgtc
     6301 ttcttgttca aacatcttgg ttctcgaatt ttttccaata gcgcatttta acagaatgcc
     6361 gccgcgttca gacggcattt tgcaccgcac gccctgcaag cggcgcgctt ttgcccctgc
     6421 cgcccgaaac ggttaaaatg ccgcaaagca tcatcaagaa agatttctat gctgttcaac
     6481 cacaccgctt ccgaactcct cgacctctgc cgccgcacgc tcgacttggc aaaagcgacg
     6541 ggcgcaaccg ccgccgaagc cgatttcagc gaatcattgg gacaaagcgt cagcgtgcgg
     6601 ctgggcgaaa tcgaacaaat cgagtttcag caggacaagt cgctggacat taccgtttac
     6661 gtcggcaaac gcaaaggccg cgccggcacc gccgatttct ccgaacaagc cctgcgcgac
     6721 accgtccgcg ccgccgccga catcgcccgc cacaccgccg aagacggttg cgccggactt
     6781 gccgatgcct gtctgatggc aaaacacatc ggcgaccccg acctttacca cgaatgggat
     6841 ttggatacgg aagccgccgt cgagttggca aaacaatgcg aacaagccgc cctgaatgag
     6901 gatgagcgca tcgaaaactc cgaaggcgcg gcggtgcaaa ccggccatta ccaatacgtt
     6961 tacggcaaca cccacggttt tgccgcacac cggcaaggca cgcaccacag catttcctgc
     7021 agcgtcgttg ccgccgacga aaacgggatg cagcgcgact actggtacga ttccgcctgc
     7081 cgccatccgg atatggacag ccccgaaacc atcggtcaaa ccgccgcccg ccgcactttg
     7141 cgccgactcg gcagccgcag catcccgaca ggcagctacc ccgtcctctt cgataccacc
     7201 gtttcgggcg gtcttatcgg acacctcgtc ggcgcactct ccggcggcgc gctctaccgc
     7261 caaagcagtt tcctgatcga cagcatcggc aaaaaagtcc tgcccgattt cctcaacctg
     7321 cgcgaagaac cgcacatccc ccgctctttc cgcagcagct attttgatgc ggaaggcgtt
     7381 gccaccgcac cgcgcttcgt gattcaaaac ggcattgtca aaggctattt cctcagcagt
     7441 tacagcgcgc gcaaactcgg tatgcagacc acgggcaacg ccggcggcgc gcacaacctg
     7501 tatttgaacc atacgcacga aacgcaatcc gacctgctga aagaaatggg gacgggattg
     7561 ttggtaaccg aactgatggg acagggcgcg aacaccatta ccggtgacta ctcgcgcggc
     7621 gcggcgggtt tttgggtgga aaacggcgtg attgcctacc ccgtccacga gattaccgta
     7681 gccggacgct tgcaggatat gtaccgcgac attgtcggcg tggcggatga cgctttgcgg
     7741 cgttcgtcca acaaaatcgg ctcgattctg attgcgggga tgacggttgc cggaagctga
     7801 acgccctgcc gatgccgtct gaagacgaag gcagcacgtt ttgccccgtg cctgcccgtt
     7861 tgccgtttta tgccgcaccg ccttttgccg acaacattgc acattttttc atcagcactg
     7921 attttccctt atccgtcaaa atactaagcc acttgtccac aacagggtac acacaagttc
     7981 aggataaggc gtgcggggat tggggttttt ccgccgccgg caaaacggca gacaaaaacg
     8041 gcgggacatt gcctgtcccg ccgttttcaa atatacattt gaccgtacat caggaattaa
     8101 gcagcctgaa tgttggcggc ctgtttgcct ttagggccgg tggttacgtc gaaagagacg
     8161 cgttggcctt ctttcagggt tttgaaacct tccatattga ttgctgagaa gtgagcgaac
     8221 aaatcttcgc cgccttcatc aggagtgatg aaaccaaaac ctttagcgtc gttaaaccat
     8281 tttacgatac cggttgccat tagaaacttc ctatactcaa aaattaacaa aatcagcaaa
     8341 acaaggcata cggcaaaccg agccgtctag cgttccttcc agcttgatat actcggcgga
     8401 tgcccaatcc tgcttaaccg tctttttaca tttgttaaga caaaacgtca agctatgttt
     8461 tcaaaaaagt gggaaaatag gcaaaagtac cgaaaataca acaaaaatgc cgtctgaacg
     8521 cggctttcaa atgggacaca ctatgaccgc gcaacaccaa tccgacacgc tcttgcaccg
     8581 tctgaacacc ctgccgccga aacgttacgg cgttttccta ttgaacgacg attacaccac
     8641 gatggaattt gtcgttgaaa tcctgaccga aatcttcatg ctcggacaag aacaggcggt
     8701 agcggtaatg ctcttggttc atcacgaagg caaaggcctg tgcggcactt acacgcgcga
     8761 tattgcccaa accaaacagc aacaagtcat gcagcgggca aaagccgaag ggcatccgct
     8821 gcaatgtatt gtcgaggaga tttaatatgc ttgcacccga attggaacag attttgcagc
     8881 agctttaccg cgaggcgcgt aaggctcatt atgaatttat cagcctcgag catctgcttt
     8941 tggtactcat cgaagaagat gcctccgtgc cgaacgtctt aaaactctgc ggcgcggatt
     9001 tgaaagtggt gtccgaacag ctcgccgcca gcgttgccga aaacaccccc ctgattcccg
     9061 aacacctttt agacacggtc gaaacccggc ccacgctcgg cttccaacgc gtgatgcaac
     9121 gggcgatggt gcatacccag tctgccggaa aagccgcagt cgaaccgttg gacgttttgg
     9181 tcgcgctgat gagcgaaacc gacagccaca ccgtctattt cctcaagctg caatcggtta
     9241 cgcgttttga agttttgcgc tgtattgccc acggctctcc cgatgaagat gaagacgatg
     9301 gcaactattc ttcagacggc atggacgacg ataatgaaaa ccgcaccaaa ccgggcaaaa
     9361 accctttatc ggcgtacacc gtcaacctca acgccgaagt caaagccggc cgtatcgacc
     9421 ctttgattgg tcgcaaacac gaaatggaac ggctggtgca aatcctatgc cgccgccgca
     9481 aaaacaatcc gcttttggtc ggcgaagcgg gcgtgggcaa aaccgcgctg gcggaaggtt
     9541 tggcacatca aatcgtcaac ggcggcattc cagacgcgct caaagatgcc gaagtgtacg
     9601 cgctggatat gggctcgctg ttggcgggca cgaaataccg cggcgacttt gaagcgcggg
     9661 tcaaatccgt cttgaaacag ctcgaaaaaa tcccgcacgc cattttgttt atcgacgaaa
     9721 tccacaccat catcggcgca ggcagcacca gcggcggcac catggacgcg tccaacctgc
     9781 tcaaacccgc gctggcaaaa ggttcgctgc gctgcatcgg cgcgaccact tacgacgaat
     9841 accgcaccat tttcgacaaa gaccacgcct taagccgccg cttccaaaaa atcgacgtgg
     9901 tcgaacccac cgtttccgaa accgtacaaa tcctgcgcgg cttgaagccg atgtttgaag
     9961 ccttccacca agtccgctat acgcaaggcg cactcgaagc cgccgccgaa ctctccgcac
    10021 gctacatcaa cgagcgtttc ctgcccgaca aagccatcga cgtgatggac gaagcaggcg
    10081 cggcgcaacg gattctgccc aaatccaaac agaaaaaagt catcggcaaa gcacaaattg
    10141 aaaccgtcat cgccaaagtt gcgcggattc ccgaaaaaac cgtgtcgcac gacgacaaac
    10201 aagtgctgca attcctcggt cgcgatttga aaaacatggt ttacggtcaa gaaaacgcca
    10261 tcgacgcgct ggttgccgcc gtcaaaatgt cgcgttccgg ccttgccctg cccgacaaac
    10321 cgataggcag cttcctcttc tccggcccga ccggcgtggg caaaaccgaa gccgccaaac
    10381 agcttgccta ctcgctgggc gtaccgctgc aacgctttga tatgtccgaa tacatggaac
    10441 gccatgccgt atcgcgcctc atcggcgcgc caccgggcta cgtcggcttt gaacaaggcg
    10501 gccttttgac cgaagccatc aacaaacagc cgcattgcgt attgctcttg gacgaaatcg
    10561 aaaaagccca ccccgacatt ttcaacgtcc tcctgcaagt catggacgca ggcaaactga
    10621 ccgacaacaa cggcaagagt gccgatttcc gcaacgtcat cctaattatg accactaacg
    10681 caggtgcgga gagtctcagc cgacccagcc tcggctttac cgccaaacgc gagcgcggcg
    10741 acgaaatgca ggctatcaac aagctcttca cgcccgagtt ccgcaaccgc ttggatgcga
    10801 ttatcccgtt tgcgccctta tccgaacccg tcatcaccaa agtcgtggac aaattcctgc
    10861 tccagctcga acaccggctc ctcgacaaaa aagtcgaagc cgaattcacg tcggcattgc
    10921 acaaatatct ggcggaaaaa ggttttgacc cgcaaatggg cgcgcgcccg atgcaccgcc
    10981 tgattcagga aaaaatccgc aaaccgctcg ccgacgaact cctgttcggc aaactatccg
    11041 acggcggctt cgtacggata gactgggatg cggcaaaaga agaagccgtg ttgaagttta
    11101 agaaaagcaa ggtcaaaata aaaaccgcct ccgcataaaa tcaaaaatgc cgtctgaaat
    11161 ttcagacggc attttgtcaa atatcggtcc ctattccggc aaacttctcc acaaacgccg
    11221 caatcttttg aaaaacactt tgtttcttcg tcagatattg cgggttgagc ggactcattt
    11281 tcggcagggt ttcggtcagt tccgtgccgt tttcgctggc atagccgcgt ttgagcgagc
    11341 cggtcaaata gcgtttggcg gcggtttcgt tcaggccttc ggcggcaatc aatcctgccg
    11401 cttcgtgccg catcacctct tgcccgtagg tgtaaaaggt ttccagtatg gcgggaacgt
    11461 cgggtacttt gtccaaatcc gtatcgttga tgaaatccac aatcagaccc tctttggcgc
    11521 ggtgtccgat acttgcgcgg atgatgcggc ggatttcttc caccagctcc gctttgcctt
    11581 tgattttttt gtggtgttcg aaaaccagtt gcaggatgta atccaaattg atttcctgag
    11641 atttgagcaa atccacctca aaaaccacat cgtcccaatc gattttcgat tgctctttct
    11701 gttcgcctgc tttttggcgg cgcagccagt cgcggatgtc gttgtaggcg gaacggtagt
    11761 cctgcaccgc cctttcagac ggcatcggca cttgccgcat ttcctgcacg tcttcatcgc
    11821 tcaggtagta tttttcctga aacgccttca tcgcatcttc gtccgccgca tccacactct
    11881 gcaattcacg cagcgcggca aattcatcgt agttctgcaa tacgttttcc gcccgcaggt
    11941 attcgccgaa gagtttggca aaatcttttt tgtctttttc cgtttcgatt ttgtcgggat
    12001 cggggaaacg ttggcgcaat tcttttgcca catccagata accgcgccgc gcttcgccgg
    12061 tctggctgtc ggtatagccg ttcatatatt cttcgtagct tttttccagc actacatttt
    12121 tggtgttttt atcgccgaag agcgtgatcg catcaatggt tgcctgctcc aaatcgcgga
    12181 agcagacaat attgccgaag gttttggtag catcataaat gcggttggtg cgagaaaacg
    12241 cctgcatcag gccgtgatag cgcaggtttt tatcgacgaa cagcgtattc agcgtcggcg
    12301 cgtcaaaacc cgtcaaaaac atgccgacca caatcagcaa atccacttcc tggtttttca
    12361 cccgttttgc caaatcgcgg tagtagttct gaaaggcttt gctgtccgtg ccgaaattgg
    12421 ttttgaaaca ggcgttgtaa tcgttgatgg cagcctgcaa aaattctttc gcgctgctgt
    12481 ccatcgcttc cggttcaaag gtctcgtcaa caatttcacc gacggcgttc tgctcttcgt
    12541 tggccgcaaa ggaaaaaatg gtggccactt tcagcgggtg caggctgcct gcctgttgtg
    12601 ttttgaacgc ttcataatag cacttcgccg catccacgct gctgacggca aacatggcgt
    12661 tgaagccttt gccgcctgcg ttcagccggt gcgttttctg cctgaactgg ttcaggatat
    12721 attgcgtgat ttcgcggatg cgttcggggt gcagcagggc ttggcgattt tcggcggcac
    12781 tcagtttctt ctcgtcctgt tccgcttcca cggctttgaa ctgcgggcgc acatcgttgt
    12841 aatccacttt gaatttcaat actttttcat cgcggatggc atcggtaatc acataagaat
    12901 gcagctcccg cccgaacacg cccgccgtgg tttccgcgcc caaagcgttt tcgggaaaaa
    12961 tcggcgtgcc ggtaaagccg aactggcaga attttttaaa tttctttttc aggttttttt
    13021 gcgcttcgcc gaattgcgag cggtggcatt cgtcgaaaat aaagacaacc cgctgatggt
    13081 aaaccggcag attatcttca ctcttcatca ggttgttcag cttttggatg gtggtaacga
    13141 tgattttgtt gtcgtctttt tccaaattgc gtttcaagcc cgtcgtgctt tccgaaccgt
    13201 ttacgctgtc gggagaaaaa cgctggtatt ccttcatcgt ctgatagtcc aaatccttcc
    13261 tgtccaccac gaagaaaacc ttgtcgataa acgccgattc tgtcgccaga cgcgccgcct
    13321 taaagctggt cagcgttttg ccgctgcccg tggtatgcca aacatagccg ccgctttcgg
    13381 gcttactcca attctttgcc agagccgaac tgttgatttt ccacaaaatg cgttcggcgg
    13441 cggcaatctg atacggccgc ataatcagca gcgtattatt cgcatcaaac acgctgtaat
    13501 gcagcaaaac gctcagcaat acgcttttct gcaggaacgt ggcggtaaag tctttcaaat
    13561 ccttaatcgg atgattgtcc gaccgcgccc aattcatcgt gaaatcgaag ctatttttgt
    13621 cgcgcttggt ggtgttggcg aaatagcgcg tgtccgtgcc gttggaaatc acgaagattt
    13681 gcaggaattt gaacagcgaa ttttcgctgt tgaagctctc tttgctgtaa cggtgcacct
    13741 gattgaatgc ctcgcgcacc gccacaccgc gctttttcaa ttcaatctgc accagcggca
    13801 ggccgtttac caacacggta acgtcgtaac ggtttgcatg cgtgcccgtc tgctcaaact
    13861 ggttgataag ctgcacatgg ttgcgggcaa ggtttttctt gtccagcaga taaatgtttt
    13921 tcagacggcc gtcatcaaaa gcgaaatcgt aaatatggtc gtcgtggatt ttgcgggttt
    13981 tatcggtaat gttttcagac ggcctgtcca gatattccgt caaaaaccgc gcccattcgc
    14041 cgtctgaaaa cgccacatcg ttcagccgct gcaactgcgc gcgcaggttt tccagcagcc
    14101 tgctttggct gttcaaatcc ttgcggtatt cgtaaccctg attctgcaaa tcggcgatta
    14161 actccgcttc caaccggttt tccgattggt agctgcccga ctgttcgatt ttttcatatt
    14221 ggtcgagcac gatgaaattc ggcgtttcgg cgatgggttt ggtttcgagg ttcatagttc
    14281 gtcctttgca gggtcgggtt ttaaacagtt tgatgttcgg attgggctgc ctgaaaatgt
    14341 gcaggctgct ttggtcggct tcggcggaat gcggggtggt tgtgtccgcc gtagggtggg
    14401 cttcagccca ccgccccacc tgccgttgtt ttactgttgt tgcagcttgc tgctgtttcg
    14461 gtgggctgaa gcccacccta ctttgtctgc gacttctacc ccaccgatgc cgtctgaatc
    14521 atcccaatcg ggtttttctc tttgttttga gcatctatcg ccatattttc cggtttccac
    14581 acgctgcggc ggaatgcggg gcggttgccg ctcaccgtag ggtgggcttc agcccaccgc
    14641 cccgcctgcc cttgttttac tgttgttgca gattgccgtt tttttcggtg ggctgaagcc
    14701 caccctaccg aaaggcaagc agctgttcgc ggtaatattc gtattgtttg cggcgcaggg
    14761 cgatttcgtg cggcaggcct tcgctgatgg agtgggtcag ggtatcgaat ttgtcgagga
    14821 tggcgacgat tttttcttgt tcggggagtg gagggatggg gattgggaag cgtttaaaac
    14881 cattcatatc cacagaagca aaactcgatg ttgtcgtatt ctttttgcac cattcactaa
    14941 gattaaaaca atagtaataa agaaaataaa tgctgagttt atcggcaaat tcaggcttta
    15001 aagataaact ggtaaatctt tggttggcta agaatggaac ggttattagt gcatgctcac
    15061 ctatggttgc agatgtagcc atgataatag aattggctgg aaatagctta ccgcccttta
    15121 ctgcgctttt tgatatatgc tgtaatgaat tatctaaaat acgaccattt tccctaatat
    15181 cttccattct aaaccaaggg attgagccat tttcccaata ttctttattt gatttggaag
    15241 gggtatagcc attcttcaag tcaaacacct cccccaacgt cttccaaacc acatctttca
    15301 gacggcattg atagccatca gctatccccc ccgatttgat tgtcaaaatc taaaagaaag
    15361 tcgcggtaat accggtattg gcgtttgcgc agggctaatt cagcttccag ctcggtgaat
    15421 ttgtcaagta tttttacaat tttttgttgg gtttccaggg gtgggatagg gattaataat
    15481 tttttcaagt tactggcatt tagagcagga atacctgtaa atgtacataa ggcatgaatc
    15541 tcttgttcaa attcaagtaa tatatgatag agaaaacgaa catccaattc tgttctattc
    15601 ttaatagtaa ctgcataatt taagttgcca cgaaaatatc ttccttcttg ccacgttatt
    15661 gagccgactc ccgctcctct tgttgtgatg ccgatagggt cattttcagt gttccattca
    15721 tcaatatagc caagcggctc tttgccactg ttaataactg gataactacc aatattattt
    15781 gagattttct gcttacttac agcttgtcct gtttttatga tagctatccc attttctcca
    15841 cccaacggct tccactccac cggtgccgtc tgaatcatct caatcaattt tttcgctttg
    15901 ctttgcatat ccatggttgt tttccgtttc tttcccgctg tggcgggatg tggggcggtt
    15961 gtggggtgct tcggctcact ctgtccgttt gccgttattt ctgcgggctg aagtccgtcc
    16021 tgctttcagg ctgcctgcaa tggtgtgcag gctgcttttt caggtagcct gaatggtagt
    16081 tattttgtgc ggtctttttt ctgtttgatc tgttgcacgg ctgttttttc caacgcttta
    16141 acgctttcca gataggcttg ctccaccggc gacaggatgc gcgcttcata ggcgcggtat
    16201 tcgcgttcgg ctttctgctc tgcctgtttg cggctgatgc tgcctgcacc ctgtaatgtg
    16261 ccttgtccgt acagcccgga aaatttgtcc aattcggcta tccagtcgcg catatacatg
    16321 gggctttgct cctgcgcttt gatttccgct aggtcgaaga aggcggaaac cagacggttc
    16381 aggcggaaca gttcgtcttc ggtcagatag tttttggcga ttttggcttc attcagcgtg
    16441 gggattgcgc cttgaaaggt ggtcagcccc ataaagtctt tgctgctgtc ggcacggctg
    16501 tatatcagct cagctgcggt ttgccggctg gcggcatagt gcagtttgtt ttgaacggcg
    16561 gcaaaaaagg tttggctttc gctgcttttg gggttgtagt cttggctggt ggcatataaa
    16621 tcaagcactt gccggtatag ggctttttcg ctgctgcgga tgtcgcgaat gcggttgagc
    16681 agttctttcc aatagtcgcc gccgcctgtg cctttcaggc gttcgtcgtc tatggcaaag
    16741 cctttggtca gatattcgtc cagccgttcg gttgcccatt ggcggaattg gatgccccgc
    16801 gcggaacgga cgcggtagcc gacggcaata atcatgggca gggaataatg ggcgattttg
    16861 cggtttacct tgcgcccgtt ttcattttga actgtcaact ggaagttgac agttgccttc
    16921 tcttccaatt cttgctctgc aagaatggtt ttaatgtgtt tgctgatatt ttgtttggtg
    16981 gtttggtaca gttctgccat gtccgcctgc gtcagccaaa gctgtccgcc aaattcctgc
    17041 aaggcaaatt gggcagtgcc gtcgttggcg gtgtatagga tgatgctcat gcttcaatct
    17101 ctgcaatcac ttcgtcaatt tcacgccgca gccgttcgat tttggcaacg gtttcgctga
    17161 tttcggcgtt aagctgtttg atgtcgataa tttcgcgggt gtcttcgggt tcaacatagc
    17221 tgctgacggc gaggttgtag ccgttgtctt tgacggtttg ctgggcggcg ttttgggcga
    17281 tatgcggcac atcggcttta tcggcgaaga gtttgacgat ttcggcaatg tgttcttcgg
    17341 ttaagacgtt gttgttggtt tcttttttaa agaagccgcc tgcgtcgatg aattggatgt
    17401 cggtattgtc tttgtgtttg gacaaaacca gtatattgac ggcgatgccg gtgccgtaaa
    17461 agagattggg cgcaagggcg atgacggttt ccacgtagtt gccctccacc agatattggc
    17521 ggattttctg ctctgcgccg ccgcgataga aaatgccggg gaatgagacg atggcggcgc
    17581 ggcctctgcc ggaaaggtag ttcagtgcgt gcagaatgaa ggcaaaatcg gctttggatt
    17641 tcggggcgag tacgcctgca ggggcaaagc ggtcgtcgtt gattaaggtg gggtcgccgc
    17701 tgcctatcca gttgatggaa tagggcggat tggaaacgac ggcatcaaag ggtttgctgt
    17761 ctttgagttt gggattggtc agtgtgtcgc ccaattcgat gtggaatttg ttgtaattga
    17821 cgttgtgcag aaacatattc atgcgggcga ggttgtaggt ggtgtggttg atttcctgcc
    17881 cgaagaagcc ttcttcgatg atgtgctcgt caaactgttt tttcgcctgc aagagcaggc
    17941 tgcccgagcc gcaagctggg tcgtagattt tgtttacttt ctcctgcccg tgcaccgcca
    18001 gccgcgcaat cagcttggat acggatacgc tttgcggggt gaaaaattcg ccgccggatt
    18061 tgcctgcgtt ggcagcgtag ttggaaatca ggtattcgta ggcatcgccg aaaaggtcga
    18121 tgtggtggtc ttcaaaactg ccgaaatcga gttccgccac gccttttagg acggcggcaa
    18181 ggcgtttgtt cttgtcggca acggtgctgc cgagccggct gctggtggtg tcgaagtcgt
    18241 caaacaggcc tttaatgtct tgttcggacg gatagccgga ggcggagctt tcaatcgcgg
    18301 taaaaatttc tttcagcttg gtgttgagct cttcgttttg atgggcttcg gcggcaatat
    18361 tgcaaaaaag ctggccgggg tagatgaaat agcctttgac tttgacggca tcgtctttga
    18421 tttcgggcgt gatgatgctg tccggcatag cggcgtaatc aatactgctg tcgcctgcct
    18481 gcatatagtc ggtaaagttt tcgctgataa agcggtagaa aagtgtgccg agaacgtatt
    18541 gtttaaagtc ccagccgtcc accgcgccgc gtacttcgtc ggcaattttc caaatttggc
    18601 ggtgcagttg ggcgcgttgt tgcatttcgg tcatcatcga aatccatata aaagttaaac
    18661 aaatcgaaat cgcctgatat tttcagacga ttttttacgg gcattcaaat taagccaaat
    18721 tttccagcat ccatttgacg tagcggtcga cgcctgattt gacatcgaaa aattcttcct
    18781 tatatccggc ttcgcgcaat ttggtgatgt cggcttgggt gaagctttgg tatttgcctt
    18841 tgagcgcgtc gggaaatggg atgtagcgga taaattcttc ttctaccaac tcttttaaac
    18901 tcatttcagg tttgccttcg gcggcgcggc aggcgttgac ggtggcagcg gcgagttcgt
    18961 taaactgttg gctgcgacct gttcctaggt tgtagatgcc ggaaagttcg ggatggtcga
    19021 agaagtagag gttgactttg gcaacgtctt cgacgctgac aaagtcgcgg gtttgttcgc
    19081 cgttgccgta gccgtcgttg ctgccgaaca ggttgacgta accgtgttcg cggtattggt
    19141 ggaaatggtg gaaggcgacg gatgccatac ggcctttgtg ttgttcgtgt tgtccgtaca
    19201 cgttgaagta gcggaagccg acgacttggg cggtcaagcc ttctttcatg cggcggcgca
    19261 atacttggtc aaacaggaat ttggaatagc cgtacacatt gagcggtttt tcgagttcgc
    19321 gctcttcacg gaagatttcg cctttaccat acacggcggc actggaggca taaaggaagg
    19381 gaatgcgttc gtcctgacac cagtccaaca aatccagcgt gtactggtag ttgttttcca
    19441 tcatatacaa accgtcgtga ttcatggtgt cggaacacgc gccttgatgg aaaacggctt
    19501 cgatgttttg ataaggtaaa atgtgttccc tcacttggcg gatgaattca tgtttgtcga
    19561 gataatgggc gatttcgcac tcggcaaggt ttttgaattt ttcgcctttg ctcaaattat
    19621 cgacggcaac aatgtcagta ataccgcgtt gattaagtgc tttgacgatg ttgctgccga
    19681 taaagccggc cgcgcctgtt acgatgatgg tcatattcgg tttcctttgt tttgagtaaa
    19741 attaataaac ttagttacaa gaaatcatcg atattgtcct gaaacacaaa tttgcgatga
    19801 tattccaaat atttttctct tccttcggga tatattctca tcttaatttt ttgcatttgg
    19861 attgatatta agtttttccc atgtgtaacg gcttagtcga gtaccgcaaa tcaaacgacc
    19921 atcatccaag aaagtaatat aaccttgatc gaacaaccaa tcataagtcg gcgttaaagc
    19981 taacccattt aaataatcta atgcctcttt ctcatttttc tcagtaatac aaaccatata
    20041 aggtttaata tgactagccc ttaacaaaat ctcatctgta attaatgtaa atggacattg
    20101 cggcatatga tttataacat ccttgcgata tttctgctgc ccttttctac ttttctgttt
    20161 aatgatttct tgctctacga attgattaaa ttctgaagcc ggtatttcta atttttctct
    20221 tgataagagt tgcgggtgca cgatagagcg aaattgataa tccaaaaata ttcggaaata
    20281 aaataatggt tctgaatctt ctatatcttt gacaggcaat agtttaagaa ttgataaata
    20341 actaattttg ggcaatacaa tcttacgcca aattgaccat atatcatcct ccgaacggat
    20401 ataaccccta cggtaacctt tagaattttc caaatggtct gatacatcat ggattgaaaa
    20461 gaaaatattt tctgtaggca gattattaat acttaaaacg taatcatcat aaaaccttga
    20521 aatatcatga tgatatttct gttcttgttt gtgatattca acttttgcat caaccaaata
    20581 acgctgtaaa tttttcttat taaaaaaaca atttttctga atgaaaggat attctaccct
    20641 ccttccattt tttgtctcag taatccccca attttcatac tcaaaaaatg tacttagttt
    20701 tcgaccacta tcatcaatat aactacctac atatttgcgt gcttccccat taccaccaaa
    20761 aacagataac ttgttattcc tgtgaataaa actatcttcc gcacgtaaat tttgaatact
    20821 atcgacaata aaatactcta tgttttcaat agtaattctt tgaaaatccg gcattttact
    20881 ctccataaag cgtaatatcc atttgtttta atatagcgat taatacatca acaacaatac
    20941 tgtttcccgc ttggcgatac atttgagtat cactaactaa aattttaaaa tcatctctaa
    21001 aacccattag ccgcaaacat tccctaggtg ttaatttacg aatacgtcca cgattatgag
    21061 taacataatt atcaaccccg gcacgatgca ttttatgcat agtttgcaat aatgggcgag
    21121 ctacaggcaa atcagtttcc gtactggttt taaaattttt tgttcctcct gccaaaacat
    21181 aatttttgat tttttcagaa agataatatt tttcctcaac gttatttaca tcaaaaataa
    21241 agtcatcaaa ttcagattcg cgggctgcct gaaaaataaa atcaccatgc caattaaatt
    21301 gttgatttgc tttttggcat aaggcaattt ctccattaat ctgtgtataa cgtttttgtc
    21361 tatttttaga actggtaaca aatttcacac ccttttcacg taaaaaatat ttgctatcag
    21421 tatagtcctc caaaaaatct tgcatagtat gttctaattc aatcttttca ggaaactgaa
    21481 aaccatttat aggaggggta tgaaagccaa caacaaaaat acgctcacga tgttgaggaa
    21541 tcccataatc cttactattc attatttgga aatataagtc ataaccaagt gaataaaaaa
    21601 cactttttac aactttccaa gtttttccat tatcatgatt gagcaagccc tttacatttt
    21661 cataaataaa tatctttggt tggacttcat ccacaacgcg agcaaattca tagaataatg
    21721 ttcctcgtgt atcttctaat cctgcacgtt tgccaaccat ggaaaatgct tggcaaggac
    21781 tgcctccaac taaaatatca acttgatttc taaactttct cgcatcaaat tgagtaatgt
    21841 cgttatgcca aaaatcttca tttaatttat agtttccaag ataacttttt ttaacgtatg
    21901 gatcaatatc tcctgcaaaa acaatggtat ggtttaaatt taatcggtgg aatgcctgtt
    21961 caaccgcacc aatcccgctg aatacggttg ctaatctaat atgtgaatca ggtttaagaa
    22021 aagttttaga tttccaacct tgttgactgg gaaagagcaa agttttttgt aatcgagtat
    22081 cgtgtgtctg tgccattgtc gaaatagtca tacttatatc gttctgttta tcttatcaat
    22141 atgaaaacta cattgttgat tgccctgaca atgccttgat caattcggca aacgagcaaa
    22201 ccgccgtacc gagtttcgcc acgacaaccc cggccgcagt attggcaagg tacatggctt
    22261 cgggcatggt gcagcctgcc gccaaaccca agcccattcc ggcaatgacg gtgtcgcccg
    22321 caccggatac gtcgtaaact tcttgggcgc gggtgggctg gtaaatcggt tcgccttcgc
    22381 tgaacaaggt catgccttct tcgcttcggg tcagtaaaac ggcggtcagg tcgaggtggc
    22441 ggcgcaggtt ttgcgctttt tcggtcagct cgctttcgtt tttccaactg ccgaccactt
    22501 ctttcaattc ggcgcggtta ggcgtaatca gagttgcacc gacatatttt tcgtaatcgt
    22561 cgcctttggg gtcgattaag acggtttttc cagcgtgttt cgcccaatcg atcatatcgg
    22621 agatatgcga caggccgcct ttgccgtagt ctgaaaaaat gattgcgtcg tattcgggca
    22681 agatttcgcg gtatttctgc ttgatttgtt ccaacacttc gcagttggga tgttcttcaa
    22741 aatcaagacg gataagctgc tggttgcggg cgacgacgcg cagtttgacg gtggtggcga
    22801 tttgtttgtc gcgcatcaga taggaggcga cgccgtcctg caccatcagc gcgtcgagcg
    22861 cgtcggcggc ttcgtcgttg ccggttacgg acaacagccc tgccctgccg cccaacgaag
    22921 cgatgttgcg cgcgacattt gccgctccgc ccgcgcgttg gtcgattcgt ccgattttcg
    22981 ccaccggcac gggggcttcg ggcgaaatac gggacacatc gccgaaccaa tagcggtcga
    23041 gcatcacgtc gccgacaacc aggactttgg cttgcgcgaa acgggatttg agggtttctt
    23101 gttggaactt agcggacata ttgcctccgt tgtgtttttt tcagacggcc tcagcctgta
    23161 aggccgtctg aaaatcagtt tgcttcaagg tttgccacgc ggttcacttc gcgcaatacg
    23221 gctaccggat cggcagcttg ggttacagga cgacccatta ccaaataagt cgaaccggca
    23281 gccaaggctt cggccggtgt cataatgcgg cgttgatcgt cgttgttgcc ggcaacgtcc
    23341 aagcggatgc cgggtgtaac caagacaaaa tcccgtccca attcgcggcg caatgatgcg
    23401 gcttcttggg cggaacatac cacgccttcc aagcctgcac tttgcgtcag tttcgccaaa
    23461 cggatgactt gctcttcggg agcgatgttc aaaccgattt ctgccaagtc gctttgttcc
    23521 atactggtca acacggttac gccgattaaa agcggcttgg tttgatatcc ggcaacggct
    23581 tctgctgcgg cttccatcat acggcggccg cccgatgcgt gcatatcgac catccacacg
    23641 cccatatcgg cggcgacttt acaggcttgc gcgacggtgt ggggaatatc gtggtatttc
    23701 aaatcgagaa aaagtttgaa accttgattg attaagcttt ctgccaaatt gcggccggtt
    23761 gcggtaaaca gctctttgcc gattttgatt tgacacaatg tcgggtcaag attgcggaca
    23821 aatccgagcg tatctttttc gttggcaaaa tcgagggcga cgataacggg ggtgcgttgt
    23881 tgcggagttt ggaagtcgga gattaaagga ttcatggtgt tttcgtttcg ggttttcaga
    23941 cgacctttat cgtctttttc gcagtatagt ggattaactt taaaccggta cggcgttgtc
    24001 tcgccttagt tcaaagagaa cgcttctcta aggtgctgaa gcacaaagtg aatcggttcc
    24061 gtactgtttg tactgcctgc ggcttcgtcg ccttgtcctg atttttgtta atccactata
    24121 acaacgtaaa ttcaaaccgt aggtcgggca ttgatgtccg acctacgcgg actcaagcct
    24181 ccgacaaact gtttcggata aatttgaacc ggtacatcag ccgtcattcc cgcgcaggcg
    24241 ggaatccatt gataaaactc agttcatcag atttaaacag cgattgccca aattcagaaa
    24301 tggattcccg cctgcgcggg aatgacgcca aatgattatt tttcggttgc aacacgctgt
    24361 ttatcaaaaa caggtcgtct aaaaacctga ttttctgttt tcagagtgcg aagcctgccc
    24421 gtgggtacga ccttttcgat ttatttgccc aatgcgccca atacttcggc tttcacggct
    24481 tctaccggct gagtgccgtc aactttgatg tatttaggcg cgtgttcgcc ttccagtttg
    24541 ctgtaaaaat cgaccaaaac ttcggtttgc tcgtggtaaa cggcaaggcg ttttttcacg
    24601 gtttcttctt tgtcgtcgtc gcgctgaatc aaatcttcgc cggttacgtc gtctttgcct
    24661 tcaactttgg gcgggttgta ggtaacgtgg taagtacggc cggaagccaa atgcacgcgg
    24721 cggccgctca tacgatcgac aatcacgctg tcaggcacat cgatttcaac gactgcatcc
    24781 aaatccacgc ctgcttcaac catcgcttcg gcttgtgcca atgtgcgcgg gaaaccgtcg
    24841 aacaggaaac cgtttttgca gtcgtcttgc gcgatgcgtt ctttgaccat gccgataatg
    24901 atgtcgtcgc gcaccaagcc gccttcgtca atgatttttt tcgcttccaa acccaagggc
    24961 gtgcctgcct taatcgcggc acggagcatg tcgccggtag agatttgcgg aatgccgaac
    25021 gctgcggtga tgaattgcgc ctgagtgcct ttgcccgcgc ccggcgcgcc taaaagtaat
    25081 gctttcatga agtgatcctt tgaaatgtgt ttattggaat caaacagatg gtttacgatt
    25141 ctacacggct tggcacaata gttcaaaaac caactgcaca aactgccatt tgcaagcaaa
    25201 tgttttgcat acctttgccg agtctgatat tcacaagccg gcaacttttt gggacaatcc
    25261 ccaaaatttc aaaacatcac accctaccaa aaaggaacat ccgtgaaacg aatttttctg
    25321 tttttggcta ccaatatcgc tgttttggtc gtaatcaaca ttgttttggc ggttttgggc
    25381 atcaacagcc ggggcggcac gggcagcctg ttggcgtatt ccgccgtcgt cggcttcact
    25441 ggttcgatta tttcgctgct gatgtccaaa ttcatcgcca aacaatcggt cggcgcggaa
    25501 gttatcgaca cgccgcgcac cgaagaagaa gcctggcttt tgaacactgt cgaagcccaa
    25561 gcgcggcaat ggaacctgaa aacgcccgag gtcgccatct accactcccc cgaacccaat
    25621 gcctttgcca cgggcgcatc gagaaacagc tccctgatcg ccgtcagcac cggtttgctc
    25681 gaccatatga cgcgcgacga agtggaagcc gtattggcgc acgaaatggc acacgtcggc
    25741 aacggcgata tggttacgct gacgctgatt caaggcgtgg tcaatacctt cgtcgtgttc
    25801 ctgtcgcgca ttattgccaa cctgattgcc cgaaacaacg acggcagcca gtcccaggga
    25861 acttatttcc tggtcagcat ggtattccaa atcctattcg gcttccttgc cagcttaatt
    25921 gtcatgtggt tcagccgaca acgcgaatac cgcgccgacg cgggcgcggc aaaactggtc
    25981 ggcgcaccga aaatgatttc cgccctgcaa aggcttaaag gcaacccggt cgatttgccc
    26041 gaagaaatga acgcaatggg catcgccgga gatacgcgcg actccctgct cagcacccac
    26101 ccttcgctgg acaaccgcat tgcccgcctc aaatcgctct gagccgattt gaaacaacaa
    26161 aaaaaccgta cgcgcaagca gtacggtttt ttgtatatgc tgtctgaaaa catcaggttt
    26221 ccataccaac accaaccgta tccatttccg caccggatac gccgcattga tataccctga
    26281 taaaccgtgt ccggaca
//
LOCUS       DAWGNT010000009        26087 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.009, whole genome shotgun sequence.
ACCESSION   DAWGNT010000009 DAWGNT010000000
VERSION     DAWGNT010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 26087)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26087)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26087
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.009"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..183
                     /locus_tag="WHR98_000242"
     CDS             <1..183
                     /locus_tag="WHR98_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEZ2306980.1"
                     /translation="AKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGA
                     PAPKAPAKPVLPADKK"
     gene            452..1573
                     /gene="dnaJ"
                     /locus_tag="WHR98_000243"
     CDS             452..1573
                     /gene="dnaJ"
                     /locus_tag="WHR98_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEZ2306981.1"
                     /translation="MSNQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAE
                     EKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFDFGDIFSQ
                     MFGGGSGRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGTS
                     PETCPTCKGSGTVHIQQAIFRMQQTCPTCHGAGKHIKEPCVKCRGAGRNKAVKTVEVN
                     IPAGIDDGQRIRLSGEGGPGMHGAPAGDLYVTVRIRAHKIFQRDGLDLHCELPISFAT
                     AALGGELEVPTLDGKVKLTVPKETQTGRRMRVKGKGVKSLRSSATGDLYCHIVVETPV
                     NLTDRQKELLEEFERISTGLENQTPRKKSFLDKLRDLFD"
     gene            1769..3787
                     /locus_tag="WHR98_000244"
     CDS             1769..3787
                     /locus_tag="WHR98_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEZ2306982.1"
                     /translation="MNKSLSGSVEEYRELTLRGMILGALITVIFTASNVYLGLKVGLT
                     FASSIPAAVISMAVLKFFKGSNILENNMVQTQASAAGTLSTIIFVLPGLLMAGYWSGF
                     PFWQTTLLCIAGGILGVIFTIPLRYAMVVKSDLPYPEGVAAAEILKVGGHEEGDNRQG
                     GSGIKELAAGGALAGLMSFCAGGLRVIADSASYWFKSGTAIFQLPMGFSLALLGAGYL
                     VGLTGGIAILLGISIAWGIAVPYFSSHIPQPSDMEMAAFAMKLWKEKVRFIGAGTIGI
                     AAVWTLLMLLKPMVEGMKMSFKSFGGGAPAAERAEQDLSPKAMIFWVLAMMFVLGVSF
                     YHFIGDSHITGGMAWLLVVVCTLLASVIGFLVAAACGYMAGLVGSSSSPISGVGIVSV
                     VVISLVLLLVGESGGLLADEANRKFLLALTLFCGSAVICVASISNDNLQDLKTGYLLK
                     ATPWRQQVALIIGCIVGALVISPVLELLYEAYGFTGAMPREGMDAAQALAAPQATLMT
                     TIASGIFAHNLEWVYIFTGIAIGAVLIVVDLVLKKSSGGKLALPVLAVGMGIYLPPSV
                     NMPIVAGAVLAAVLKHIIGKKAENREGRLKNAERIGTLFSAGLIVGESLIGVIMAFII
                     AFSVTNGGSDAPLALNLQNWDAAASWLGLAFFVTGMFFFAQRVLKAGR"
     gene            complement(3831..4388)
                     /gene="rfbC"
                     /locus_tag="WHR98_000245"
     CDS             complement(3831..4388)
                     /gene="rfbC"
                     /locus_tag="WHR98_000245"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HEZ2306983.1"
                     /translation="MNIIDTALPDVKILKPQVFTDARGFFMETFRDGWFKENIADRTF
                     VQENHSKSGKGVLRGLHYQTENTQGKLVRVVVGEVFDVAVDMREGSPTFGKWVGEILS
                     AQNQCQLWIPEGFAHGFCVLGDAAEVVYKCTDYYKPEAEQVLIWNDPTVGIGWPLQTA
                     PLLSPKDLAGKAWAQAEKLRLTLSR"
     gene            complement(4433..5299)
                     /gene="rfbA"
                     /locus_tag="WHR98_000246"
     CDS             complement(4433..5299)
                     /gene="rfbA"
                     /locus_tag="WHR98_000246"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEZ2306984.1"
                     /translation="MKGIILAGGSGTRLYPITRGVSKQLLPVYDKPMIYYPLSVLMLA
                     GIRDILVITAPEDNASFKRLLGDGSDFGISISYAVQPSPDGLAQAFIIGEEFIGNDNV
                     CLVLGDNIFYGQSFTQTLKQAAAQTHGATVFAYQVKNPERFGVVEFNENFRAVSIEEK
                     PQRPKSDWAVTGLYFYDNRAVEFAKQIKPSARGELEITDLNRMYLEDGSLSVQILGRG
                     FAWLDTGTHESLHEAASFVQTVQNIQNLHIACLEEIAWRNGWLTKKDVETRAKPLEKT
                     AYGQYLLRLIGK"
     gene            complement(5362..6429)
                     /gene="rfbB"
                     /locus_tag="WHR98_000247"
     CDS             complement(5362..6429)
                     /gene="rfbB"
                     /locus_tag="WHR98_000247"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEZ2306985.1"
                     /translation="MRKILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESL
                     TDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNI
                     VGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGDLGGTDDLFTETAPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYG
                     DGMQIRDWLFVEDHARALYQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPE
                     KPAGVARYEDLITFVQDRPGHDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDN
                     KTWWQNVLNGSYRLERLGTGK"
     gene            complement(6545..7588)
                     /gene="galE"
                     /locus_tag="WHR98_000248"
     CDS             complement(6545..7588)
                     /gene="galE"
                     /locus_tag="WHR98_000248"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEZ2306986.1"
                     /translation="MNKKYPKINYIGNKEKIASWICDQPPSDVDTVADVFSGGCSFAY
                     EAKKRGYRVITNDILAINYQIALALIENNHETLNDDDVAMIFSGSPHAGFMSQRYAEK
                     FYFHDECQQLDLYRKNIGKLDNQYKRALAFTLMRRAMIRKMPYTEDMRPGDTANPYGA
                     SKAMVERMLTDIQKADPRWSVILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAS
                     GRLPQLSVFGGDYPTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRAS
                     SVLEIIRAFEAASGLTIPYEVKPRRAGDLACFYADPSYAKAQIGWQTQRDLTQMMEDS
                     WRWVSNNPNGYDD"
     gene            complement(7601..8581)
                     /gene="dcm"
                     /locus_tag="WHR98_000249"
     CDS             complement(7601..8581)
                     /gene="dcm"
                     /locus_tag="WHR98_000249"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HEZ2306987.1"
                     /translation="MHTPLTYIDLFSGAGGLSLGFEQAGFQQLLSVEMESDYCQTYRT
                     NFPHHQLLQKDLTTLTEQDLINCLNGQAVDLIIGGPPCQGFSMAGKIGRTFTDDPRNH
                     LFKEFVRIVKIVQPYFFVMENVARLYTHNSGKTRIEIIQAFQNIGYSVECKILSAADF
                     GVPQIRSRVIFIGRRDKGKISFPEPLQISHQTVGSAIGHFPKLAAGESNPHVANHEAM
                     NHSAQMLEKMAFVKNGGNRNDIPEPLRPKTGDIRKYIRYNSNKPAVCITGDMRKVFHY
                     EQNRALTVRELAALQSVPDNFIFVAAKLPSSSRLVTPYRLYWQKLLLKVF"
     gene            complement(8612..10885)
                     /locus_tag="WHR98_000250"
     CDS             complement(8612..10885)
                     /locus_tag="WHR98_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HEZ2306988.1"
                     /translation="MNITQILSQELSATAAQITAAVELLDDGATVPFIARYRKEATGG
                     LDDTQLRRLAERLQYLRELEERKAVVLKSIEEQGKLSDGLRAQIEAADNKTALEDLYL
                     PYKPKRRTKAQIAREHGLQPLADVLLAEQSQDVEAAAQGYLNENVPDAKAALDGARAI
                     LMEQFAEDAELIGTLRDKLWNEAEIHAQVVGGKETEGEKFSDYFDHREPIRAMPSHRA
                     LAVLRGRNEGVLNIALKYQPDDTPITQQSEYEQIIARRFKVSDGHKWLRDTVRLTWRA
                     KIFLSLELEALNRLKEAADTDAITVFARNLKDLLLAAPAGRLTTLGLDPGYRNGVKCA
                     VVDDTGKLLDTVIVYLHQENNMLATLSRLIKQHGVKLIAIGNGTASRETDKIAGELVR
                     GMPEMGLHKIVVSEAGASIYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKID
                     PKSIGVGQYQHDVNQSQLAKSLDAVVEDCVNAVGVDVNTASAPLLARISGLNQTLAQN
                     IVAYRNENGAFDSRKKLLKVPRLGEKTFEQAAGFLRINGGTEPLDASAVHPEAYPVVA
                     KMLAQQGISAAELIGNRERVKQIKASDFTDERFGLPTILDILSELEKPGRDPRGAFQT
                     ASFAEGIHEIGDLQVGMILEGVVSNVANFGAFVDIGVHQDGLVHISALSNKFVQDPRE
                     VVKAGDVVKVKVLEVDAARKRIALTMRLDDEPGGAKHKMPSENRSRERTAGRKPQRND
                     RAPANSAMADAFAKLKR"
     gene            complement(10949..11599)
                     /locus_tag="WHR98_000251"
     CDS             complement(10949..11599)
                     /locus_tag="WHR98_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEZ2306989.1"
                     /translation="MISVEHVSKQYQMRGGMRTVLDDINFSLQKGEKVGILGRNGAGK
                     STLIRLISGVEPPTTGEIKRTMSISWPLAFSGAFQGSLTGMDNLRFICRIYNVDIDYV
                     KNFTEEFSELGQYLYEPVKRYSSGMKARLAFALSLAVEFDCYLIDEVIAVGDSRFADK
                     CKYELFEKRKDRSIILVSHSHSAMKQYCDNAMVLEKGHMYQFEDMDKAYEYYNSLP"
     gene            complement(11596..12393)
                     /locus_tag="WHR98_000252"
     CDS             complement(11596..12393)
                     /locus_tag="WHR98_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_157140410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEZ2306990.1"
                     /translation="MKALHKTSFWESLAIQRRVIGALLMREIITRYGRNNIGFLWLFV
                     EPLLMTFVIVLMWKFLKADRYSTLNIVAFAITGYPMLMMWRNASKRAVGSISSNASLL
                     YHRNVRVLDTILARMILEIAGATIAQIVIMAVLIAIGWIEMPADMFYMLMAWLLMAFF
                     AIGLGLVICSIAFNFEPFGKIWGTLTFVMMPLSGAFFFVHNLPPKVQEYALMIPMVHG
                     TEMFRAGYFGSDVITYENPWYIVLCNLVLLLFGLAMVSKFSKGVEPQ"
     gene            complement(12393..13556)
                     /gene="ctrB"
                     /locus_tag="WHR98_000253"
     CDS             complement(12393..13556)
                     /gene="ctrB"
                     /locus_tag="WHR98_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export protein CtrB"
                     /protein_id="HEZ2306991.1"
                     /translation="MSEQLPVAVATETKAERKKPKKKSWIKKLSPLFWVTVIIPTVIS
                     LVYFGFFASDRFTSQSSFVVRSPKSQSSLNGLGAILQGTGFARAQDDIYTVGEYMRSR
                     SSLDELRKILPVREFYETKGDVFSRFNGFGFRGEEEAFYQYYKNQVMINFDTVSGIST
                     LNVTSFDALESKKINEALLKQGEALINQLNDRARADTVRYAEEVVKTAAERVKEASQN
                     LTDYRIANGVFDLKAQSEVQMGLVSKLQDELIVIQTQLDQVKAVTPENPQIPGLQARE
                     QSLRKEIDQQLRAISGGGHSSLSNQAAEYQRVYLENQLAEQQLAAAMTSLESAKVEAD
                     RQQLYLEVISQPSLPDLAHEPKRLYNIVATLIIGLMVYGILSLLTASIREHKN"
     gene            complement(13571..14746)
                     /gene="ctrA"
                     /locus_tag="WHR98_000254"
     CDS             complement(13571..14746)
                     /gene="ctrA"
                     /locus_tag="WHR98_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide export outer membrane
                     protein CtrA"
                     /protein_id="HEZ2306992.1"
                     /translation="MFKVKFYIRHAVLLLCGSLIVGCSAIPSSGPSAKKIVSLGQQSE
                     VQIPEVELIDVNHTVAQLLYKAQINQSFTQFGDGYASAGTLNIGDVLDIMIWEAPPAV
                     LFGGGLSSMGSGSAHQTKLPEQLVTARGTVSVPFVGDISVVGKTPGQVQEIIKGRLKK
                     MANQPQVMVRLVQNNAANVSVIRAGNSVRMPLTAAGERVLDAVAAVGGSTANVQDTNV
                     QLTRGNVVRTVALEDLVANPRQNILLRRGDVVTMITNPYTFTSMGAVGRTQEIGFSAR
                     GLSLSEAIGRMGGLQDRRSDARGVFVFRYTPLVELPAERQDKWIAQGYGSEAEIPTVY
                     RVNMADAHSLFSMQRFPVKNKDVLYVSNAPLAEVQKFLSFVFSPVTSGANSINNLTN"
     gene            14881..16014
                     /gene="neuC"
                     /locus_tag="WHR98_000255"
     CDS             14881..16014
                     /gene="neuC"
                     /locus_tag="WHR98_000255"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEZ2306993.1"
                     /translation="MKRILCITGTRADFGKLKPLLAYIENHPDLELHLIVTGMHMMKT
                     YGRTCKEVTRENYQHTYLFSNQIQGEPMGAVLGNTITFISRLSDEIEPDMVMIHGDRL
                     EALAGATVGALSSRLVCHIEGGELSGTVDDSIRHSISKLSHIHLVANEQAVTRLVQMG
                     EKRKHIHIIGSPDLDVMASSTLPSLEEVKEYYGLPYENYGISMFHPVTTEAHLMPQYA
                     AQYFKALELSGQNIISIYPNNDTGTESILQELLKCQSEKFIAFPSIRFEYFLVLLKHA
                     KFMVGNSSAGIREAPLYGVPSIDVGTRQSNRHMGKSIIHTDYETKNIFDAIQQACSLG
                     KFEADDTFNGGDTRTSTERFAEVINNPETWNVSAQKRFIDLNL"
     gene            16018..16704
                     /gene="neuA"
                     /locus_tag="WHR98_000256"
     CDS             16018..16704
                     /gene="neuA"
                     /locus_tag="WHR98_000256"
                     /EC_number="2.7.7.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acylneuraminate cytidylyltransferase"
                     /protein_id="HEZ2306994.1"
                     /translation="MEKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKC
                     FDRIIVSTDGGLIAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSNSGTVTL
                     LQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQINNGEYAPMRHLSD
                     LEQPRQQLPQAFRPNGAIYINDTASLIANNCFFIAPTKLYIMSHQDSIDIDTELDLQQ
                     AENILNHKES"
     gene            16705..17754
                     /gene="siaC"
                     /locus_tag="WHR98_000257"
     CDS             16705..17754
                     /gene="siaC"
                     /locus_tag="WHR98_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysialic acid capsule biosynthesis protein
                     SiaC"
                     /protein_id="HEZ2306995.1"
                     /translation="MQNNNEFKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAA
                     YNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVES
                     KGMIFISTPFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTGMNSI
                     ESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLD
                     NYACLGAVALGGSILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLARGGKKD
                     TIIAGEKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNGDFSVNEYETLFGKVAA
                     CNIRKGAQIKKTDIE"
     gene            17834..19312
                     /locus_tag="WHR98_000258"
     CDS             17834..19312
                     /locus_tag="WHR98_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,8-polysialyltransferase family protein"
                     /protein_id="HEZ2306996.1"
                     /translation="MLQKIRKALFHPKKFFQDSQWFATPLFSSFAPKSNLFIISTFAQ
                     LNQAHSLTKMQKLKNNLLVILYTTQNMKMPKLIQKSVDKELFSVTYMFELPRKPGIVS
                     PKKFLYIQRGYKKLLKTIQPAHLYVMSFAGHYSSLLSLAKKMNITTHLVEEGTATYAP
                     LLESFTYKPTKFEQRFVGNNLHQKGYFDKFDILHVAFPEYAKKIFNANEYHRFFAHSG
                     GISTSQSIAKIQDKYRISQNDYIFVSQRYPVSDEVYYKTIVETLNQMSLRIEGKIFIK
                     LHPKEMENKNIMSLFLNMVTINPRLVVINEPPFLIDPLIYLTTPKGIIGLTSTSIVYT
                     PLLSPTTQCLSIGQIVIDSIHHTAQQENTALIEEHLEIVKQFDFIKILSSIEDGIDTN
                     SFKTEETLEMLLKSAEYAYKNKNFYQAIFYWQLASNNDLSVLGYKSLWYYNALNKVKQ
                     NYKMKYLEINYIERISLYFNDKDKMIWQNIKNDFFKYSLCNQ"
     gene            19341..20723
                     /locus_tag="WHR98_000259"
     CDS             19341..20723
                     /locus_tag="WHR98_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306997.1"
                     /translation="MSINTFETFIYELYQSTNFAEIARITGFSNHKALNLETIRMMAI
                     SCFKTKNTTKCIELSEYFNEKSDIKDFFIFEILAECYFLQNDLVKSLENYEKALLLNP
                     KLISARFKHMCLKYRLFNELDSTTFSKYEIESQQKKKISNLRIIAYIQLKEKKYFKAY
                     NNLKLLIELNKSPFYPDYLSIIHAIENLEYSKQSQNTKKELTEYIKISKAIALKSEFV
                     CNGSNNLFVTLSPATGFVLKKYNYPADKLCFIDNTNTYYTFAYELIAEHIISLVKKYK
                     YENISIIGSSKGGTATIILLNLLQTALPNTTICAVSCSPQIQIFPFNKNLTIPSYQKF
                     AEYFSYNSILESKCAQAQKLINFDILYRNKLTIFYGDKFKMDAQEVSTIRPINNTTII
                     PLNYSGHGSLIPLTIPENKSFDELKQKYSKLEIDTDFQALGGNNLSSIVDEIFEIYSN
                     PDMRLHKFLC"
     gene            complement(20774..21730)
                     /locus_tag="WHR98_000260"
     CDS             complement(20774..21730)
                     /locus_tag="WHR98_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2306998.1"
                     /translation="MHQYYDAVILSVGNGLLKRFFKQNAQLNIASRPLIITLFPGVVF
                     GDQASILSRMGADIVLYNNKHDFRIAETYKKQYKLSCQNILYGYPNFRHASKGCHGER
                     IYFIDQVKIPFKKEERIYTLKKLIALAEKYPEKEFTILLRVADKDITVHQDKHSYIEL
                     AKQFQLPSNLTIERKSTAQAFQEMGYCLSYSSTMLFEAECKGIPVGVVADLGFSKSYA
                     NQHFLGSGVLIYFDQIDFTSPKIANPGWLDCYATKKVITTDEFNKLLKQVVPLQHDYQ
                     EYLFAVNSIESTQTIFLRKFKKLIRDPKQFFYDSKWFRRRNS"
     gene            22113..23132
                     /gene="galE"
                     /locus_tag="WHR98_000261"
     CDS             22113..23132
                     /gene="galE"
                     /locus_tag="WHR98_000261"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEZ2306999.1"
                     /translation="MKKILVTGGTGFIGSHTVVSLLKSGHQVVILDNLCNSSINILPR
                     LKTITGQEIPFYQGDIRDREILRRIFAENRIDSVIHFAGLKAVGESVAEPIKYYDNNV
                     SGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERI
                     LTDIQKADPRWSMILLRYFNPIGAHESGLIGEQPNGIPNNLLPYICQVAAGKLPQLAV
                     FGDDYPTPDGTGMRDYIHVMDLAEGHVAAMQAKSNVAGTHLLNLGSGRASSVLEIIRA
                     FEAASGLTIPFEIKPRRAGDLACFYADPSYTKAQIGWQTQRDLTQMMEDSWRWVSNHP
                     NGYDD"
     gene            23228..24289
                     /gene="rffG"
                     /locus_tag="WHR98_000262"
     CDS             23228..24289
                     /gene="rffG"
                     /locus_tag="WHR98_000262"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEZ2307000.1"
                     /translation="MKKILVTGGAGFIGSAVVRHIINDTQDAVVNVDKLTYAGNLESL
                     ESLANHPRYAFEQVDICDRAALDRVFAEHQPDAVMHLAAESHVDRSIDGPAAFIETNI
                     VGTYTLLEAARAYWHDMPSEKKAAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYG
                     DGMQIRDWLFVEDHARALYQVVTEGEIGETYNIGGHNEKANIEVVRTICALLEELVPN
                     KPQGVARYEDLITYVKDRPGHDVRYAIDAAKIGRELGWQPQETFESGIRKTVEWYLNN
                     QTWWSRVLDGSYNRERLGS"
     gene            24502..25377
                     /gene="rfbA"
                     /locus_tag="WHR98_000263"
     CDS             24502..25377
                     /gene="rfbA"
                     /locus_tag="WHR98_000263"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEZ2307001.1"
                     /translation="MKGIILAGGSGIRLYPITRGVSKQLLPVYNKPMIYYPLSVLMLA
                     GIRDVLVITTPEDNDAFRRLLGDGSDFGIQISYAIQPSPDGLAQAFLIGEEFIGDDSV
                     CLVLGDNIFYGQHFSQSLKEAAASVETKGATVFGYQVKDPERFGVIEFDENFKALSIE
                     EKPKQPKSDWAVTGLYFYDNRVVEFAKQVKPSERGELEITTLNQMYLDDGSLNVQLLG
                     RGFAWLDTGTHASLLEAASFVETIENIQNLQVACLEEIAWRNGWLSSEEIRNLAKPMC
                     KNEYGRYLLRLVGKD"
     gene            25432..25971
                     /gene="rfbC"
                     /locus_tag="WHR98_000264"
     CDS             25432..25971
                     /gene="rfbC"
                     /locus_tag="WHR98_000264"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HEZ2307002.1"
                     /translation="MNIIDTRIPDVKLLEPKVFGDERGFFMETFRDEWFRQNVAERTF
                     VQENHSKSTQGVLRGLHYQTENTQGKLVRVVSGEVFDVAVDMRRDSPTFGHWVGEVLS
                     ADNKRQLWVPEGFAHGFYVLSDEAEFVYKCTDYYNPNAEHSLIWNDATVGIDWPLLGE
                     PSLSAKDLAGKMLAEAATF"
BASE COUNT         7122 a         5978 c         5868 g         7119 t
ORIGIN      
        1 gcgaaggcga aggccattgc ggaataccgt gcgcaaaacg gtgcgttcaa gtctgtggac
       61 gatttgacca aggtaaaggg catcggccct gcggtgctgg cgaagctgaa ggaccaggct
      121 tcggtcggcg cgcccgcacc aaaagcccca gccaaaccgg tgctgcccgc ggataaaaaa
      181 taaaataggg ggaagtctgc agccgcatca aatgccgtct gaacatgcgt tcgggcggcg
      241 tttttataac aaaaacactt catggcggtt ggttttatgc ctgtctaagt ttttgtgtcg
      301 tgcatacctg aagatttcag acggcatcgg tttatgctgt ctgaaaagtg tattccgttt
      361 cagtttgtaa gctatggcag tctgtttgtc ttgtattttg cgcaattgcc cttattttga
      421 gccgtgattt tattttgaat tagatgaaaa aatgagtaat caagattttt atgcgacgct
      481 gggtgtggca agaacagcta ccgatgatga gattaaaaaa gcctaccgga aattggcaat
      541 gaaataccat cccgaccgca atcctgacaa taaagaggcg gaagagaagt ttaaagaagt
      601 acaaaaggcg tatgaaactt tgtccgacaa ggaaaagcgc gctatgtacg accagtatgg
      661 tcatgcggcg tttgaaggcg gcggacaggg gggcttcgga gggtttggcg gatttggcgg
      721 tgcgcagggt tttgactttg gggatatttt cagccaaatg tttggaggcg gttcggggcg
      781 cgcccagcct gattatcagg gtgaggacgt tcaagtcggt atcgaaatca cgcttgaaga
      841 agccgcaaaa ggtgtgaaga aacgcatcaa tattccgact tatgaagcgt gtgatgtctg
      901 taacggcagt ggcgcgaaac cggggacatc cccggaaacc tgcccgactt gcaaaggttc
      961 gggtacggtg cacatccagc aggcgatttt ccgtatgcag cagacttgtc cgacctgcca
     1021 cggtgcgggc aaacacatta aagaaccttg cgtcaaatgc cgtggcgcgg ggcggaataa
     1081 ggcggtcaag acggtggaag tcaatattcc cgccggtatc gatgacgggc agcgtatccg
     1141 tttgagcggc gaaggcggac cgggtatgca cggtgcgcct gccggcgacc tgtatgtaac
     1201 cgtccgcatt cgggcgcata agattttcca acgcgacggt ctggacttgc attgcgaact
     1261 gccgatcagt tttgccacgg ctgctttggg cggggagttg gaagtgccga ccttggacgg
     1321 aaaggtcaag ctcaccgtcc ccaaagaaac ccaaaccggc aggaggatgc gcgtgaaggg
     1381 taagggtgtc aaatctttac gcagcagcgc gaccggcgat ttgtactgcc atattgttgt
     1441 cgaaacgcct gtcaatttga ccgaccgtca aaaagagctt ttggaagaat ttgagcggat
     1501 ttctaccggc ttggaaaacc aaacaccgcg caagaaatcg tttttagaca agctgcgcga
     1561 tttgtttgat tgattttaag gttcggaaac aagcagccgt atcggggaat ctccctgata
     1621 cggctgtttt tgtttgttta aaaatagttt ttattttcaa tggggtatgg ggcagggtgg
     1681 gataactgtt tttaactgtt ctttttaaaa cttgacatca tggcgcgatg ccaacaatat
     1741 gtgaacgtct gttgtcaaag gaagaataat gaataaatct ttatccgggt cggtagaaga
     1801 ataccgcgaa ctgacgctcc gaggcatgat actcggtgca ttgatcactg taatttttac
     1861 tgcgtccaac gtttacctcg gtttgaaagt cgggctgacc tttgcctcgt cgattccggc
     1921 ggcggtgatt tcgatggcgg ttttaaagtt tttcaaaggc agcaatattt tggaaaacaa
     1981 catggtgcag acccaagctt cggcggcggg tacgctttcg accatcatct tcgtcctgcc
     2041 cggtttgctg atggcgggct actggagcgg tttcccgttc tggcagacga cgcttttatg
     2101 tattgccggc gggattttgg gggtgatttt caccattccg ctgcgttacg cgatggtggt
     2161 gaaaagcgat ttgccttatc cggaaggtgt ggcggctgct gaaattttga aagtgggcgg
     2221 tcatgaagaa ggggataacc gtcagggcgg cagcggcatc aaagagctgg cggccggcgg
     2281 tgcgttggcg ggattgatga gcttttgcgc cggaggtctg cgcgtgattg ccgacagcgc
     2341 gagttattgg tttaaaagcg gtacggcgat tttccagctg ccgatgggct tttcactggc
     2401 attgttgggc gcgggctatt tggtcggact gacgggtggt atcgccatcc tgttgggcat
     2461 ttcgattgct tggggcattg ccgtgccgta tttctcctca cacattccgc aaccttccga
     2521 tatggaaatg gcggcgtttg cgatgaagct gtggaaggag aaagtgcgtt ttatcggtgc
     2581 ggggactatt ggcattgcgg cggtttggac gctgttgatg ctgctcaagc cgatggtgga
     2641 aggcatgaag atgtcgttca agagttttgg cggcggtgcg cccgctgcgg aacgcgccga
     2701 acaggatttg tcgcctaagg ctatgatttt ttgggtgctg gcgatgatgt ttgttttagg
     2761 cgtgtcgttt taccacttta tcggcgattc gcacattacg ggcggcatgg cttggctttt
     2821 ggtggtcgtt tgcacgcttt tggcttccgt catcggcttt ttggtcgccg ccgcctgcgg
     2881 ttatatggca ggtttggtcg gctcgtcttc cagcccgatt tccggcgtgg gcatcgtgtc
     2941 cgtcgtcgtt atttcactgg ttttgctgct ggtaggcgaa tccggaggtt tgttggcgga
     3001 tgaggctaac cgcaaatttt tgctggcact gactttgttt tgcggctcgg cagtaatctg
     3061 cgtggcttcg atttccaatg acaacctgca agacttgaaa accggctacc tgctcaaagc
     3121 cacgccttgg cggcagcaag tcgccctgat tatcggctgt atcgttggtg cgctggttat
     3181 ttcgcccgtg ttggaactgc tttacgaagc ctacggcttt accggcgcaa tgccgcgcga
     3241 aggcatggat gcggcgcagg ctttggcagc acctcaagcg actttgatga cgaccatcgc
     3301 gtcgggcatt ttcgcccaca acctcgaatg ggtctacatc tttaccggca tcgcgattgg
     3361 agcggtatta atcgtcgtcg atttggtgtt gaaaaaatca tcaggcggta aacttgccct
     3421 gcccgtcctt gcggtcggta tgggtattta tctgccgccg tccgtcaata tgcccatcgt
     3481 ggcaggcgcg gtgttggcgg cagtgttgaa acacatcatc ggtaaaaaag cggaaaaccg
     3541 tgaaggccgt ctgaaaaacg ccgagcgcat cggaaccttg ttctccgccg gcctgattgt
     3601 cggtgaaagc ctgatcggtg tgattatggc gtttattatt gccttctccg tgaccaacgg
     3661 cggctcggat gcgccgcttg cgttgaatct gcaaaactgg gatgccgccg cctcatggtt
     3721 gggcttggcg ttcttcgtta ccgggatgtt tttctttgca cagcgcgtac tgaaggcggg
     3781 taggtagcct gtcggaaaaa atgccgtctg aaacgttcag acggcatttt ttatcgggaa
     3841 agcgtaaggc ggagcttttc ggcttgcgcc cacgctttac cggcaagatc tttgggcgac
     3901 agcagcggcg cggtttgaag cggccagcct atgccgactg tcgggtcgtt ccatattaaa
     3961 acctgttcgg cttcaggctt gtaatagtcc gtgcatttgt acacgacttc cgctgcgtcg
     4021 cccaaaacgc aaaacccgtg cgcgaagcct tcgggtatcc aaagctggca ttggttttgc
     4081 gcggacagaa tctcgcctac ccatttgccg aaagtcggcg aaccttcgcg catatcgacg
     4141 gccacgtcga acacttcgcc gacaactacg cgtacgagtt tgccttgtgt gttttcggtt
     4201 tggtagtgca ggccgcgcaa tacgcctttg ccggatttgg agtggttttc ctgcacaaag
     4261 gttcggtcgg caatattttc tttgaaccac ccgtcgcgga aggtttccat aaaaaagccg
     4321 cgcgcgtctg tgaagacttg cggttttaaa atttttacgt cggggagggc ggtgtcgatg
     4381 atgttcatga ttttctctgt atgccgtctg aagaaagtgg ttcagacggc atttatttgc
     4441 cgattaggcg cagcaggtat tgcccgtagg cggttttttc caaaggcttt gcccgtgttt
     4501 ccacatcttt tttcgtcagc caaccgttgc gccaggcgat ttcttcgagg caggcgatgt
     4561 gcaggttttg gatattttgc acggtttgga cgaatgaagc ggcttcgtgc aggctctcgt
     4621 gggtgccggt gtccaaccat gcgaaaccgc gtcctaatat ttggacggac aatgaaccgt
     4681 cttccaaata catccggttg aggtcggtaa tttccaattc gccgcgtgcg gacggtttga
     4741 tttgtttggc gaactcgacg gcacggttgt cgtagaagta caagccggtt accgcccaat
     4801 cggatttggg ccgttgcggt ttttcttcga tggaaacggc gcggaagttt tcgttaaatt
     4861 caaccacgcc gaaacgttcg gggtttttga cctgataagc aaacacggtt gcgccgtgcg
     4921 tttgcgctgc cgcctgtttc aatgtttgcg taaacgactg accgtaaaaa atattgtcgc
     4981 ccaaaaccaa gcaaacattg tcgttgccga taaattcttc gccgatgata aatgcctgtg
     5041 ccaagccgtc cggactgggt tgcacggcat aactgatgga aatgccgaaa tcgctgccgt
     5101 cgccaagcag gcgtttgaaa gaggcgttgt cttcaggcgc ggtaatcacc aaaatatcgc
     5161 ggattcccgc cagcatcaaa accgacaagg ggtaataaat catcggtttg tcgtacacgg
     5221 gcaggagctg tttggatacg ccgcgcgtga tggggtagag gcgcgtgccg ctgccgcctg
     5281 ccagtatgat gcctttcatc tttgttttct tcctttgcga tgggttttca gacggcattg
     5341 cgtcgggatg ccgtctgaaa actattttcc agtacctaaa cgttccaaac gatagctgcc
     5401 gttcaataca ttttgccacc aggttttgtt gtccagatac cattgcacgg ttttgcggag
     5461 gccggactcg aaggtttcca aaggcagcca gcccaaatcc cgcctgattt tggctgcgtc
     5521 gacggcgtag cgtacgtcat ggccggggcg gtcttgtacg aaagtaatca aatcttcata
     5581 acgcgccaca ccggccggtt tttcgggagc gagttcttcc agcagggcgc agatggtttt
     5641 gacgacttca atattggctt tttcattgtg gccgccgata ttgtaggttt cgccgacaac
     5701 accttcggta acaacctgat acagtgcgcg cgcgtggtct tcgacaaaca gccagtcgcg
     5761 gatttgcata ccgtcgccgt acacaggcag cggtttgccg tcaagcgcgt tcagaatcat
     5821 caaaggaatg agtttttccg gaaaatggta aggaccgtag ttgttggagc agttggttac
     5881 aatggtcggc aagccgtaag tacgcaacca cgcgcggacg aggtggtcgc tggacgcttt
     5941 agaggcagag taggggctgg acggcgcgta gggcgcggtt tcggtaaaca aatcgtccgt
     6001 gccgcctaaa tcgccataga cttcatcggt ggaaatatgg tggaaacgga aggcttcgtg
     6061 ctgttcagac ggcatttgtt gccagtaggc gcgggctgct tcaagcagat tgaatgtgcc
     6121 gacgatattg gtttggataa actcgcctgc cgaaccgata gaacggtcga catggctttc
     6181 cgccgccaag tgcatcacgg catcgggccg gtgttgtgcg aatacgcggt cgagttcggc
     6241 gcggtcgcaa atgtccactt gctcgaaagc atagcgggga ttatcggcaa tgtcggtcag
     6301 cgattcgaga ttgcccgcgt aggtcagttt gtcgaggttg acgacggaat cttgggtgtt
     6361 tcggataata tgacggacaa cggcagagcc gataaagccc gcaccgccgg taacaaggat
     6421 ttttctcata aatttcagag gatagccaaa aaatataaac agattatagc agacagaatg
     6481 tgtgtttttc agataaagag gccgtctgaa aacatctctt tcagacggcc tgtatcaggt
     6541 caacttaatc gtcgtagcca ttcggattat tactcaccca gcgccatgag tcttccatca
     6601 tttgggttaa atcacgctgg gtttgccagc cgatttgcgc ctttgcatag gaagggtcgg
     6661 catagaagca cgccaaatca ccggcacggc gcggtttgac ttcatacgga atcgtcaaac
     6721 ccgaagctgc ttcaaatgcg cggatgattt ccaataccga agaagcgcgg ccggagccta
     6781 agttcaacaa atgcgtgcct gctacattac tttttgcctg catagccgcg acatggcctt
     6841 ctgccaaatc catcacatga atatagtcgc gcataccggt gccgtcgggg gtcggataat
     6901 cgccgccgaa taccgacagt tgcggcagcc tgcccgaagc cacttggcag atatagggca
     6961 aaaggttgtt gggaatgccg ttgggctgtt cgccgatcaa gccgctttca tgcgcgccga
     7021 tcgggttgaa ataacgcaac aaaatcacgc tccaacgcgg atcggctttt tggatgtcgg
     7081 ttaacatccg ttccaccatc gctttggacg cgccataagg attagcggta tcgcccgggc
     7141 gcatatcttc cgtatagggc attttacgta tcatggcgcg acgcattaaa gtaaacgcca
     7201 aagcgcgttt atactggtta tccagtttcc ctatattttt acggtacaaa tcaagttgtt
     7261 ggcattcatc gtgaaaatag aatttttcgg cataacgctg actcataaaa ccggcatgcg
     7321 ggctgcctga aaaaatcatt gcgacatcat cgtcatttaa tgtttcatgg ttgttttcta
     7381 ttaatgctaa agcaatttgg taattaattg ccaaaatatc gttagtaatc acacgatagc
     7441 cgcgtttttt ggcttcatag gcaaaggaac agcctccact aaatacatct gcaactgtat
     7501 ctacatcaga cggaggctgg tcacaaatcc aggaagctat tttctcttta ttaccgatat
     7561 agttaatttt cggatatttc ttattcattt tcactcattt ttaaaatact ttcagcaata
     7621 gcttttgcca ataaaggcgg tacggcgtta ccaacctgct gctgctgggc aattttgctg
     7681 ccacaaaaat aaaattatca gggacagatt gtaaggcagc taattcacga acggttaaag
     7741 cccgattctg ttcatagtga aaaactttgc gcatatctcc tgtaatacaa acggctggtt
     7801 tgttgctgtt gtaacggatg tatttacgga tatcacctgt tttcggacgt aatggttcag
     7861 gaatatcgtt acggttacct ccatttttaa caaatgccat tttttctaac atttgtgccg
     7921 aatgattcat agcttcatga tttgcaacgt gtggattgct ttcgccagca gccagttttg
     7981 gaaaatgtcc tattgctgat ccaacagtct gatgggaaat ctgcaaaggt tcgggaaagg
     8041 aaattttgcc tttatccctc ctcccgataa atatcactcg gctacgtatc tgaggaacac
     8101 cgaaatcggc tgcactcagt atcttacatt ccaccgaata accgatattc tgaaatgctt
     8161 gaataatctc aatacgtgtt ttacctgaat tgtgtgtata gagtcgcgct acattttcca
     8221 taacaaaaaa atatggttgg acaattttaa ctattcggac aaactcttta aataaatggt
     8281 tgcgtgggtc atctgtaaat gtccgtccaa tctttcctgc catactaaaa ccttgacaag
     8341 gtggtcctcc aataatcaaa tcaactgctt gtccgttaag acaattgatt aaatcttgtt
     8401 cggttagtgt ggttaaatct ttttgcagta attgatgatg ggggaagttg gtacggtaag
     8461 tctgacaata atcagactcc atttcaacag aaagcaattg ttggaatccg gcttgttcaa
     8521 aacccaagga taggcctcct gctcctgaga aaaggtcaat ataggtaagt ggtgtgtgca
     8581 taagtcaaaa tccataaact cttcgattat tttaccgctt cagcttcgca aacgcatccg
     8641 ccatcgccga attggctggg gcgcggtcgt tgcgttgggg tttgcggccg gctgtccgtt
     8701 cgcggctgcg gttttcagac ggcattttat gttttgcgcc gcccggttcg tcatccaagc
     8761 gcatggtcag cgcgatgcgt tttctggcgg catcgacttc cagcactttc actttcacta
     8821 catcgccggc tttcaccact tcgcgcgggt cttggacgaa tttattggat agggcggaga
     8881 tgtgcaccaa gccgtcctga tgcacgccga tgtccacgaa cgcgccgaag ttggcaacgt
     8941 tggaaaccac gccctctaaa atcataccga cttgcaagtc gccgatttcg tggatgcctt
     9001 cggcaaacga tgccgtctga aacgcgccgc gcggatcacg gccgggtttt tccagttcgg
     9061 acaggatgtc caaaatggtc ggcaggccga agcgttcgtc ggtgaagtcg gacgctttga
     9121 tttgcttcac gcgctcgcgg ttgccgatga gttcggcggc gctaatgcct tgttgcgcca
     9181 gcattttggc gacgacggga taggcttcgg ggtggacggc gctcgcgtcc aacggctctg
     9241 tgccgccgtt aatccgcaaa aagcctgccg cctgctcgaa ggttttttcg cccaaacgcg
     9301 gtactttcag caattttttg cggctgtcga acgcgccgtt ttcattgcgg taggcgacga
     9361 tgttttgggc aagggtctga ttcaaaccgg aaatccgcgc caagagcggg gcggaggcag
     9421 tattcacgtc cacgccgacg gcgttcacgc agtcttcgac caccgcgtcc agcgatttgg
     9481 cgagctggct ttggttcacg tcgtgctgat actggcccac gccgatggat ttggggtcga
     9541 ttttgaccag ctcggcaagc gggtcttgca gcctgcgggc gatggacacc gcgccgcgca
     9601 gggaaacgtc caagtcgggg aactcgcgcg ctgccagttc ggacgcggaa taaatcgacg
     9661 cgccggcttc ggaaacgacg attttgtgca gtcccatttc cggcattcca cgcaccagtt
     9721 cgcccgcgat tttgtcagtt tcgcggctgg cggtgccgtt accgatggcg atgagcttca
     9781 cgccgtgctg tttaatcagg cgcgacagcg ttgccaacat attgttttct tgatgcaaat
     9841 agacaatgac ggtatccagc agcttgccgg tgtcgtccac cacggcgcat ttcacgccgt
     9901 tgcggtagcc ggggtcgaga cccagcgtgg tcagccgtcc ggcgggcgca gcaagcagca
     9961 agtctttgag attgcgggcg aacacggtaa tcgcgtcggt gtcggcggct tctttcaaac
    10021 gattgagagc ttcaagttcc aacgacaaaa agattttcgc gcgccaagtc aggcgcacgg
    10081 tgtcgcgcag ccatttgtgg ccgtctgaaa ctttgaagcg gcgggcgatg atttgctcgt
    10141 attcgctttg ctgcgtaatc ggcgtgtcgt cgggctgata tttgagcgcg atgttcaaca
    10201 cgccttcgtt gcgtccgcgc aaaaccgcta gcgcacgatg gctgggcatc gcacgaatag
    10261 gttcgcggtg gtcaaaataa tcgctgaatt tttcgccttc ggtttctttg cctccaacaa
    10321 cttgcgcgtg gatttcggct tcgttccaca gcttgtcgcg cagcgtgccg atgagttccg
    10381 cgtcttcggc aaactgctcc atcagaatcg cacgcgcgcc gtccaacgcg gctttggcat
    10441 cggggacgtt ttcgttcagg tagccttgtg cggcggcttc cacgtcctgc gactgctcgg
    10501 caagcaacac gtccgccagc ggctgcaaac cgtgttcgcg cgcgatttgc gctttggtgc
    10561 ggcgtttggg tttgtagggc agatacaggt cttccagcgc ggttttgtta tcagcggctt
    10621 cgatttgcgc gcggaggccg tctgaaagct tgccttgctc ttcaatgctt tttaaaacaa
    10681 cggctttgcg ctcttccaac tcgcgcagat attgcagccg ctcggcaagc cggcgcaact
    10741 gcgtatcgtc caacccgccc gtcgcttcct tgcggtagcg ggcgataaac ggcacggtcg
    10801 cgccgtcgtc caaaagctcg acggcggcgg tgatttgcgc ggcagtcgcg gagagttctt
    10861 gggaaagaat ttgagtaatg ttcatcaata gaattccaac ggacaggccg tctgaaattt
    10921 cagacggcct gatttaaaaa caatcgcttt aaggcagcga attataatat tcgtaggctt
    10981 tgtccatatc ttcaaactgg tacatatgcc ctttttccag caccatcgca ttatcgcaat
    11041 attgcttcat ggcgctgtgg ctgtgcgaca ccaagatgat ggaacggtct ttgcgctttt
    11101 caaacaactc gtacttacat ttatcggcaa agcgcgagtc accaactgca atcacttcgt
    11161 caatcaaata gcaatcaaac tctaccgcca acgacaaagc aaatgccaaa cgcgccttca
    11221 tacctgaaga ataacgcttg accggctcgt aaagatattg ccccaactcg gaaaactctt
    11281 cggtaaagtt cttcacataa tcgatatcga cattgtaaat ccggcagatg aaacgcaaat
    11341 tgtccatacc ggtcagacta ccttgaaacg caccggagaa tgccaaaggc caagaaatac
    11401 tcattgtccg cttgatttcg cccgtggtcg gcggctcgac accactaatc aaacggatca
    11461 acgtcgattt acctgcaccg tttcgaccca aaataccaac tttctcaccc ttttgcagcg
    11521 aaaaattgat atcgtctaac accgtccgca taccgccgcg catttgatac tgcttggaaa
    11581 catgttcaac cgaaatcatt gcggctcgac tcctttactg aatttactga ccatcgccaa
    11641 gccaaacaac aacaacacca gattgcacaa tacgatatac caaggatttt cataggtaat
    11701 tacatcgctg ccaaaatatc cggcacggaa catttctgtg ccatgcacca tcggaatcat
    11761 taatgcatat tcttgtacct tgggcggcaa attatgcaca aaaaagaatg cacccgataa
    11821 cggcatcatc acaaaagtca atgtacccca aatcttgcca aacggctcga aattaaaggc
    11881 aatcgaacaa atcaccaaac ccaaaccaat cgcaaaaaaa gccatcaaaa gccaagccat
    11941 cagcatataa aacatatctg ccggcatttc aatccagcca atcgcaatca ataccgccat
    12001 aatcacaatc tgcgcaatgg ttgcaccagc aatttccaaa atcatgcgcg ccaagatggt
    12061 atccaaaact cttacattgc ggtgataaag caagctggca tttgaagaaa tcgacccaac
    12121 tgcccgtttt gaggcattac gccacatcat caacatcgga tagccagtaa tcgcaaatgc
    12181 gacaatattc aaagttgaat atcggtctgc ctttaaaaat ttccacatca agacgataac
    12241 gaatgtcatc agcaacggct caacaaacag ccataaaaag ccaatattat tgcgaccgta
    12301 acgggtgata atttcccgca tcaaaagcgc accgattacg cgcctttgaa tggctaaaga
    12361 ttcccaaaat gatgttttat gcaaggcttt catcagtttt tatgctcacg aatgctggca
    12421 gtcaacaggc tcaaaatacc ataaaccatc aagccgataa tcagagtggc aacaatgttg
    12481 tataaccgtt taggctcatg tgccaaatcc ggcaggctcg gttgcgagat cacttccaaa
    12541 taaagctgct gacggtctgc ttcaaccttg gcactttcca aagaagtcat ggcggctgcc
    12601 aactgctgct ctgccaactg gttttccaaa tacacacgct gatattcggc agcctgatta
    12661 gacaacgaag aatgcccacc gcccgaaatg gcacgtaact gttggtcaat ttctttacgc
    12721 aagctctgct cacgcgcctg caaacccgga atctgcggat tctccggagt gactgctttc
    12781 acctgatcca gctgggtttg aatcacaatc aattcatctt gcagcttgga aaccaacccc
    12841 atttgcactt ccgattgcgc tttcaaatca aaaacgccat tggcaatccg gtaatccgtc
    12901 agattctgag aggcttcctt tacccgctct gccgccgttt tcactacttc ttccgcatag
    12961 cgcaccgtat cagcacgtgc acgatcgttc aactggttaa tcaatgcttc accttgtttt
    13021 aacaaagcct cattgatttt cttagattcc agcgcatcaa aggaagttac attcaacgtg
    13081 gaaatacccg aaaccgtatc aaaattgatc atcacctgat ttttatagta ttgataaaaa
    13141 gcctcttcct cgccacggaa tccaaaacca ttaaatcggc taaatacatc gcccttagtt
    13201 tcataaaatt cacgcaccgg caagatttta cgcagttcat ccaaagacga gcgcgaacgc
    13261 atatactccc caaccgtgta aatatcatct tgcgcacggg caaaacctgt gccctgcaaa
    13321 atggcaccca ggccattgag agaagattgg cttttaggcg agcgcaccac aaagctcgat
    13381 tgcgacgtaa aacgatcgga agcgaagaag ccgaaataca ccaacgaaat taccgtaggg
    13441 ataatcaccg ttacccaaaa taaagggctt agctttttaa tccaactttt ctttttcggc
    13501 tttttacgct cggctttggt ttcagtggca actgccacag gaagttgctc agacatctta
    13561 attactcaca ttaattagtt aaattattaa tactgttcgc gccactggta accggcgaga
    13621 acacaaacga caagaatttc tgcacttcag ccaacggcgc attcgacaca tacaatacat
    13681 ctttattctt cacaggaaag cgctgcatag aaaatagcga atgcgcatca gccatattca
    13741 cacgatatac cgttggaatc tctgcctcac tgccataacc ttgagcaatc catttatcct
    13801 gacgttctgc cggcaattcc accaatggcg tatagcggaa cacaaacaca ccacgcgcat
    13861 cagaacggcg atcttgcaaa ccgcccatac ggccaatggc ttcagaaagc gataagcctc
    13921 tggctgaaaa accgatttct tgtgttctcc ccaccgcacc catagacgta aaggtatagg
    13981 gattggtaat catggtaacc acatcaccgc gacgcagcaa aatattttgt cgcggatttg
    14041 caactaaatc ttccaaggca acagttcgta ctacattgcc acgtgtcagc tgcacattcg
    14101 tatcctgcac atttgccgtt gaaccaccta ccgcagccac cgcatccaac acacgctcac
    14161 cggctgccgt cagcggcata cgcacactat tcccagcacg aatcaccgac acattcgccg
    14221 cattattctg caccaaacgc accatcactt gtggctgatt ggccattttt ttcaggcggc
    14281 ctttaataat ttcctgaacc tgaccaggcg ttttaccgac caccgaaata tcgccaacaa
    14341 acggcacaga aaccgtacca cgtgccgtga ccaactgctc tggcaactta gtttgatgcg
    14401 cactacccga gcccatcgaa gaaaggccac caccaaacaa tactgccggc ggcgcttccc
    14461 aaatcataat atccaataca tcaccaatat ttagcgtacc agccgaagca taaccatcgc
    14521 caaactgagt gaatgactga tttatctgag ccttatataa taactgagca accgtatgat
    14581 tcacatcaat cagctccact tcaggaattt gaacttcaga ttgttgccct aaagagacaa
    14641 ttttttttgc gctggggcct gatgaaggaa tcgcagagca tcctacaatt aaacttccac
    14701 acaataataa tactgcgtga cgaatataaa atttcacttt aaacacaagc caaatcctaa
    14761 tataattata aatggcctaa ttatagcact taatcgaaat aaatttatga gtacgtagag
    14821 tataattagt attcttcttt ccaacttcct tatacttata tacttataga ttctaaaatc
    14881 atgaaaagaa ttctttgcat tacaggtacc agagccgact tcggcaagct aaaaccttta
    14941 ttagcctata ttgaaaatca cccagacctt gaattgcatt tgattgtaac tggtatgcat
    15001 atgatgaaaa catatggcag aacctgcaag gaagtaactc gagaaaacta tcaacataca
    15061 tatctgtttt caaatcaaat ccaaggtgaa ccaatgggtg ccgttttagg caataccatt
    15121 acgtttatct ctcgtctatc tgatgaaatt gaacctgata tggtcatgat tcacggcgac
    15181 cgtttagaag cactagcagg cgcaactgta ggtgcattaa gcagccgttt agtttgccat
    15241 atcgaaggtg gtgaactatc tggtacagta gatgactcca ttcgtcattc tattagtaaa
    15301 ctttctcata tccacttggt agcaaatgaa caagctgtca ctcgcctagt gcaaatggga
    15361 gaaaaaagaa agcatattca catcatcggc tcccccgatt tagatgttat ggcctcttcc
    15421 accctcccat ccttagaaga agtcaaagaa tattacggtt taccatacga aaattatggt
    15481 atttctatgt ttcaccccgt gactacagaa gcacatttaa tgccacaata tgcggcccaa
    15541 tatttcaaag cattagaatt aagtggccaa aatatcatta gcatttaccc taacaacgac
    15601 acgggtactg aaagtatttt acaagagtta ttaaaatgtc aatctgaaaa atttatcgca
    15661 tttccatcta tacgatttga atacttttta gtcttattga aacatgctaa atttatggtc
    15721 ggcaactcaa gtgcaggtat tagagaagct cctctctacg gtgtcccttc aattgatgtt
    15781 ggtacacgcc aaagtaaccg ccatatggga aaatctatta ttcatacaga ttatgaaact
    15841 aaaaatatct ttgatgcgat tcaacaagca tgcagtttag gcaaatttga agcagatgat
    15901 acctttaatg gcggagatac tcgcaccagc acagaaagat ttgctgaagt aatcaacaat
    15961 cctgaaacgt ggaatgtttc tgctcaaaaa cgttttatcg atttgaatct ttaaattatg
    16021 gaaaaacaaa atattgcggt tatacttgcg cgccaaaact ccaaaggatt gccattaaaa
    16081 aatctccgga aaatgaatgg catatcatta cttggtcata caattaatgc tgctatatca
    16141 tcaaagtgtt ttgaccgcat aattgtttcg actgatggcg ggttaattgc agaagaagct
    16201 aaaaatttcg gtgtcgaagt cgtcctacgc cctgcagagc tggcctccga tacagccagc
    16261 tctatttcag gtgtaataca tgctttagaa acaattggca gtaattccgg cacagtaacc
    16321 ctattacaac caaccagtcc attacgcaca ggggctcata ttcgtgaagc tttttctcta
    16381 tttgatgaga aaataaaagg atccgttgtc tctgcatgcc caatggagca tcatccacta
    16441 aaaaccctgc ttcaaatcaa taatggcgaa tatgccccca tgcgccatct aagcgatttg
    16501 gagcagcctc gccaacaatt acctcaggca tttaggccta atggtgcaat ttacattaat
    16561 gatactgctt cactaattgc aaataattgt ttttttatcg ccccaaccaa actttatatt
    16621 atgtctcatc aagactctat cgatattgat actgagcttg atttacaaca ggcagaaaac
    16681 attcttaatc acaaggaaag ctaaatgcaa aacaacaacg aatttaaaat tggtaatcgt
    16741 tcagtaggtt acaaccacga accattgatt atctgtgaaa tcggcatcaa tcatgaaggc
    16801 tctttaaaaa cagcttttga aatggttgat gctgcctata atgcaggcgc tgaagttgtt
    16861 aaacatcaaa cacacatcgt tgaagacgaa atgtctgatg aggccaaaca agtcattcca
    16921 ggcaatgcag atgtctctat ttatgaaatt atggaacgtt gcgccctgaa tgaagaagat
    16981 gagattaaat taaaagaata cgtagagagt aagggtatga tttttatcag tactcctttc
    17041 tctcgtgcag ctgctttacg attacaacgt atggatattc cagcatataa aatcggctct
    17101 ggcgaatgta ataactaccc attaattaaa ctggtggcct cttttggtaa gcctattatt
    17161 ctctctaccg gcatgaattc tattgaaagc atcaaaaagt cggtagaaat tattcgagaa
    17221 gcaggggtac cttatgcttt gcttcactgt accaacatct acccaacccc ttacgaagat
    17281 gttcgattgg gtggtatgaa cgatttatct gaagcctttc cagacgcaat cattggcctg
    17341 tctgaccata ccttagataa ctatgcttgc ttaggagcag tagctttagg cggttcgatt
    17401 ttagagcgtc actttactga ccgcatggat cgcccaggtc cggatattgt atgctctatg
    17461 aatccggata cttttaaaga gctcaagcaa ggcgctcatg ctttaaaatt ggcacgcggc
    17521 ggcaaaaaag acacgattat cgcgggagaa aagccaacta aagatttcgc ctttgcatct
    17581 gtcgtagcag ataaagacat taaaaaagga gaactgttgt ccggagataa cctatgggtt
    17641 aaacgcccag gcaatggaga cttcagcgtc aacgaatatg aaacattatt tggtaaggtc
    17701 gctgcttgca atattcgcaa aggtgctcaa atcaaaaaaa ctgatattga ataaaaatct
    17761 ataaattgac tcaatttaat gataatcggc tgacttttca gtcgattatc attaaaaata
    17821 tacggaaaaa caaatgttgc agaaaataag aaaagctctc ttccacccaa aaaaattctt
    17881 ccaagattcc cagtggtttg caacaccttt atttagcagc ttcgcaccca aaagcaatct
    17941 ttttattatt tctacatttg cccaacttaa tcaagctcat agtctgacta agatgcaaaa
    18001 attaaaaaat aatttactgg ttattttata taccacacaa aatatgaaaa tgccgaaatt
    18061 aattcagaaa tcagttgata aagaattatt ttcagtaact tacatgtttg aactcccaag
    18121 aaagccggga atcgtttccc caaaaaaatt cctatatatc cagcgtggat ataagaagct
    18181 tctcaaaact atccaacctg cacaccttta tgttatgtct tttgctgggc attattcctc
    18241 tctgctcagc ttagcaaaaa aaatgaatat cacaacacat ttagtagaag agggaaccgc
    18301 aacctatgcc ccactcttag aatcatttac atacaaaccc acaaaatttg agcaacgttt
    18361 tgtgggtaac aacttacatc aaaaaggcta ttttgataaa tttgatattt tgcatgtagc
    18421 tttccctgag tatgcgaaaa aaattttcaa tgctaatgaa taccaccgtt tttttgcaca
    18481 ttcaggcggg attagcacaa gccaatctat tgctaaaatt caagacaaat accgcatatc
    18541 tcaaaatgac tatatttttg taagtcaacg ctatcctgtt tcagatgaag tttattataa
    18601 aactattgtc gaaacattaa atcaaatgag tttgcgaata gaaggtaaaa tttttattaa
    18661 actccatcct aaagaaatgg agaataaaaa tattatgtct ttattcctga atatggtaac
    18721 aattaatccc cgtctagtag tgattaatga accccctttt ctcattgacc cactaattta
    18781 tttaacaacc cctaaaggaa ttattggact gacatcgact tctattgttt atacaccttt
    18841 actttcccct actacccaat gtctgtcaat tgggcaaatc gtgattgatt cgatacacca
    18901 tacagcccaa caagagaaca ccgctttaat tgaagagcat ttagagattg ttaaacaatt
    18961 cgattttatt aaaatattat caagtataga ggatggtata gacaccaatt cttttaagac
    19021 agaagaaaca ttagaaatgc ttctaaaatc agctgaatat gcatataaaa acaaaaactt
    19081 ttaccaagca attttttatt ggcaactggc cagtaataat gatctatctg tattaggcta
    19141 taaatcatta tggtattaca atgcccttaa taaagttaag cagaattata aaatgaaata
    19201 tttagaaatt aactacattg aaagaatttc cttatatttt aatgataaag ataaaatgat
    19261 ttggcaaaac atcaaaaatg atttttttaa atatagcctt tgtaaccaat aaatatattt
    19321 aagctggagt cttattcatc atgtcaatca atacgtttga aacctttatt tacgaattat
    19381 accaatcaac taatttcgca gaaattgctc gcattacggg atttagtaac cataaagcgc
    19441 taaacttgga aaccatccga atgatggcaa ttagctgctt taaaaccaaa aacaccacaa
    19501 aatgcatcga gctaagtgaa tatttcaatg aaaaatcaga tattaaagat ttttttattt
    19561 ttgaaatttt ggctgaatgc tattttctgc aaaatgacct tgttaaatct ttagagaact
    19621 atgagaaagc attattatta aatccaaaac taatctcagc aagatttaaa catatgtgtc
    19681 tcaaatatag gctttttaat gaactagata gtactacttt ctcaaaatat gaaattgaat
    19741 ctcaacaaaa gaaaaagatt tcaaacttac gcattattgc ctatatccaa ttaaaagaaa
    19801 aaaagtattt taaggcatat aataacctga aattactcat agagctaaac aaatctcctt
    19861 tctatcccga ttatttatca ataatacacg ctattgaaaa tttagagtat tctaaacaat
    19921 cccaaaatac taaaaaagaa ctaacagaat atatcaaaat ttccaaagca attgcactaa
    19981 aatcagaatt cgtatgcaac gggagtaaca atttatttgt tactttatca cctgctacag
    20041 gtttcgttct taagaaatat aattaccctg ctgataaact atgctttatt gacaacacaa
    20101 acacatatta tacttttgct tatgaattga tcgcagagca tattattagc ttagttaaaa
    20161 aatataaata tgaaaatatt tctattattg gctcatcaaa aggaggaact gccacaatta
    20221 tacttctaaa tttattgcag actgcattac ctaatactac aatatgcgca gtatcttgct
    20281 ctcctcaaat acagattttt ccattcaata agaacctaac tattcctagt tatcaaaaat
    20341 ttgcagaata tttctcttat aactcaattc tagaaagcaa atgtgctcaa gctcaaaagt
    20401 taataaattt tgatattctc tatagaaata aactaactat tttttatggt gataaattta
    20461 aaatggacgc ccaagaagta tctacaatta gacctataaa caatactact attattcctt
    20521 taaactattc aggacatggt tctcttatcc cattaacaat tcctgaaaat aaaagttttg
    20581 acgaattaaa gcagaaatat tctaaacttg aaatcgacac tgatttccaa gccttaggtg
    20641 gcaataacct ttcaagtatt gtggatgaga tttttgaaat ctattccaat cctgatatgc
    20701 gattacataa attcttatgt taaatccaat caaaaaagcg tgaaggaacc atcttcacgc
    20761 ttttttttca aactcaacta tttcttcttc taaaccattt agagtcataa aaaaattgct
    20821 tgggatctct aatgagcttt ttaaacttcc gcaaaaaaat ggtttgggtt gattctatac
    20881 tgttcactgc aaataaatat tcttggtaat catgttgcaa tggcacaacc tgctttaata
    20941 gcttattaaa ctcatcagtt gtaatcacct ttttagtagc atagcaatca agccagcccg
    21001 gatttgctat ttttggggaa gtgaaatcta tttgatcaaa ataaattaaa accccactac
    21061 ctaaaaaatg ctgatttgca taggatttag aaaagcctaa gtctgcaaca acaccaacag
    21121 ggataccctt acattcagct tcaaaaagca tagtagatga ataagataaa caatacccca
    21181 tttcttggaa ggcttgcgcg gtactttttc gctctattgt caaattactc ggcaactgaa
    21241 actgctttgc cagctctata tacgaatgtt tatcctgatg cacagtaata tctttatctg
    21301 caacccttag caaaatagta aattctttct cagggtattt ttcagccaag gcaatcaatt
    21361 tttttaatgt gtaaattctt tcttcttttt taaatggaat tttgacttgg tcaataaaat
    21421 aaattctctc tccatgacaa cctttcgaag catggcgaaa atttggataa ccataaagta
    21481 tattttgaca acttaattta tattgttttt tatatgtctc tgcaattcta aaatcatgct
    21541 tattattata taaaacaata tcagccccca tacgagatag aatacttgcc tgatcaccga
    21601 atactacacc tggaaacaag gtaataatca atggccttga agcaatattt aattgcgcat
    21661 tctgcttaaa gaaccttttt aacaacccat ttccaaccga taaaattact gcgtcataat
    21721 attgatgcat attcttaata aagtaatcat caatatgaaa aaaaaaattg cttggtcttt
    21781 atctatccct gattctaata actgtcgatt tgaaagaatg ttttctcgac ttttgtggat
    21841 ataaatatca atttgagcat cttttatctc ttttgcaaca gcatagcccg agttaaggaa
    21901 cgagtcataa ctggcaatta gtaatacttt tttcactatt ttcccttaat tctacaccat
    21961 atgaataaaa ttatagtatt ttaccttaga tatcaaatat acttaaccaa aaaaatctga
    22021 agaaatctac tgctacttca gggataatta tttcattaag attttacaac cattattatc
    22081 aatctatcaa agtattttta gtattttatt ctatgaaaaa aattctcgtt accggcggca
    22141 ccggttttat cggctcgcac accgttgttt ctttgctgaa aagcggtcat caagtcgtga
    22201 ttttggataa cctatgcaat tccagcatca atatcctgcc acgcttgaaa acgattaccg
    22261 gccaagagat tccgttttat caaggcgata tccgcgatcg tgagattttg cgccgtattt
    22321 ttgcggaaaa ccgcattgat tcggtgattc attttgccgg cttgaaagcg gtgggtgaaa
    22381 gtgtggccga gccgataaaa tattatgata ataatgtttc cggcagcttg gtgttggcgg
    22441 aagaaatggc gcgtgcgggc gtgtttagca ttgtgttcag ttcttcggcg acggtttatg
    22501 gcgatccggg caaagtgcct tataccgagg atatgccacc gggcgacacc accagccctt
    22561 acggcgcatc gaaatcgatg gttgagcgca ttctcactga cattcaaaaa gccgatccgc
    22621 gctggagcat gattttgttg cgttatttca atccgattgg cgcgcatgaa agcggtttga
    22681 ttggcgagca gccaaacggt atcccaaata atttgttgcc ttatatctgc caagtggcgg
    22741 caggcaaact gccgcaatta gcggtattcg gtgatgacta ccctacccct gatggcacgg
    22801 gtatgcgcga ctatattcat gtgatggatt tggcagaagg ccatgtcgcg gctatgcagg
    22861 cgaaaagcaa tgtagcaggc acgcatttgt tgaacttagg ttccggccgc gcttcttcgg
    22921 tattggaaat catccgcgca tttgaagcgg cttcgggttt aaccattcca tttgaaatca
    22981 aaccgcgccg cgccggtgat ttggcgtgct tctatgccga cccttcttat acgaaggcgc
    23041 aaatcggctg gcaaacgcag cgtgatttaa cccaaatgat ggaagattca tggcgctggg
    23101 taagtaatca tccgaatggt tatgatgatt aagtcatgaa attgagaggc cgtctgaagt
    23161 ttcagacggc ctttgtttgc gatttatagt aaaatttacc ttatcatttt ggcgattaat
    23221 attcatcatg aaaaaaatcc ttgtcaccgg cggtgccggt tttatcggtt cggcggttgt
    23281 acgccatatc atcaacgata cgcaagatgc ggtggtgaat gtggataagc tcacgtatgc
    23341 gggcaatttg gaatcgctgg aatctttggc caatcatccg cgctatgcgt ttgagcaagt
    23401 cgatatttgc gaccgcgcgg cactggatcg tgtgtttgcc gaacaccagc cggatgcggt
    23461 gatgcacttg gcagcagaaa gccatgttga ccgcagtatt gatggcccag cggcatttat
    23521 tgaaaccaat attgttggta cttacacgct tttggaagcg gcgcgcgcgt attggcatga
    23581 tatgccgtct gaaaaaaaag cggctttccg tttccatcat atttcgactg atgaagtgta
    23641 tggcgatttg cacggcacgg atgatttgtt taccgaaacc acgccttacg ccccttccag
    23701 tccttattcg gcttccaaag cctccagcga ccatttggtg cgcgcatggc tgcgtactta
    23761 cggcctgccg accattgtga ccaattgttc taataactac ggcccttatc attttcctga
    23821 aaaactgatt ccactgatga ttctgaatgc gcttgatggc aaaccgctgc cggtgtatgg
    23881 cgacggtatg cagattcgtg attggctgtt tgttgaagat catgcgcgtg cgctgtatca
    23941 agtggtcaca gaaggcgaaa tcggcgaaac ttacaacatt ggtggccaca atgaaaaagc
    24001 caatattgaa gtggtgcgca ccatttgcgc cctgctggaa gaattggtgc cgaacaaacc
    24061 gcaaggcgtg gcgcgttatg aagatttgat tacctatgtc aaagaccgcc ccggccatga
    24121 tgtgcgctat gcgattgatg ccgcaaaaat cggccgtgag ttgggttggc agccgcaaga
    24181 aacttttgaa agcggcatcc gcaaaacagt ggaatggtat ttaaacaatc aaacttggtg
    24241 gtcgcgcgtg ttagacggca gctacaatcg tgaacgctta ggcagttaaa tagagacctt
    24301 tgcaaactcc ccatctttgg cacatttctt cgttatgcgc tgctcgaaag cttgcctatc
    24361 tttgtgatat gtctgcgctt tctgcgctgc tataacttcg aactgtactc aaatctgtgg
    24421 ctttgcaaag gcctcaaata ataaaaatac gttcagacgg catgaaggcc gcctgaaaaa
    24481 ctacataagg aaagtaaact gatgaaaggc attattctcg caggcggcag cggtatccgc
    24541 ctttacccga ttacccgcgg cgtatcaaag caattactac cggtgtacaa caaaccgatg
    24601 atttattacc ccttgtcggt gttgatgttg gccggaatcc gcgatgtgct ggtgattacc
    24661 acccccgaag acaacgatgc tttccgccgc ttactgggtg atggcagcga tttcggtatt
    24721 caaatttcct acgccatcca acccagcccc gatggtttgg cgcaagcctt tttaattggt
    24781 gaagaattta tcggcgatga ttcggtgtgt ttggtgttgg gcgacaatat tttctatggc
    24841 cagcatttca gccaatccct gaaagaagcc gccgcttccg tggaaaccaa aggtgctacc
    24901 gtattcggct atcaagtgaa agatcccgag cgtttcggtg tgattgagtt tgatgagaat
    24961 ttcaaagccc tgtcaatcga agaaaaaccg aaacaaccta aatccgattg ggcggtaacc
    25021 ggcctctatt tctacgataa tcgcgtagtc gagtttgcca aacaagtgaa gccgtctgaa
    25081 cgcggcgaat tggaaattac caccttgaat caaatgtatt tggacgatgg ttcgctcaat
    25141 gtccaattgc tcggtcgcgg tttcgcatgg cttgataccg gcacacacgc cagcctgttg
    25201 gaagcagcct cgtttgtcga aaccattgaa aacattcaaa acctacaagt cgcctgtttg
    25261 gaagaaatcg catggcgtaa tggctggttg agcagcgaag aaatcagaaa cttggcaaag
    25321 ccaatgtgta aaaatgaata tggccgctat ttattgcgct tggttggcaa agattaagag
    25381 gttgctttta ccagttttca ggccgtctga aacgcttttt aggaaaacat gatgaatatc
    25441 atcgataccc gcattcccga tgtcaaattg ctcgaaccca aagtcttcgg tgacgagcgt
    25501 ggttttttta tggaaacctt ccgtgatgaa tggttccgcc aaaatgtagc cgagcgcact
    25561 ttcgtgcagg aaaaccacag caaatccacc caaggcgtat tacgcggttt acattatcaa
    25621 accgaaaata cacaaggcaa actggtgcgc gtggtatcag gcgaagtctt tgatgttgcc
    25681 gtggatatgc gtcgtgatag tcctactttc ggccactggg tcggtgaggt tttatcggca
    25741 gacaacaaac gccaattatg ggtgccggaa gggtttgccc atggatttta tgtgttgagc
    25801 gatgaagcgg aattcgtcta caaatgcacc gactattaca acccgaatgc ggaacattcc
    25861 ctaatttgga atgatgccac agtgggaatc gactggcctt tattgggaga accaagccta
    25921 tcggccaagg atttggcagg caagatgctt gctgaagcgg ccacatttta attttcactt
    25981 ttaggtcatc gtgggtaatt tgtagcaaga tgacctaatt tttaccagct agcctactaa
    26041 ctaaatttct actatattta aatagtcaga aaatttacac aaaatct
//
LOCUS       DAWGNT010000010        24816 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.010, whole genome shotgun sequence.
ACCESSION   DAWGNT010000010 DAWGNT010000000
VERSION     DAWGNT010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 24816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24816
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.010"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            59..1132
                     /locus_tag="WHR98_000265"
     CDS             59..1132
                     /locus_tag="WHR98_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HEZ2307003.1"
                     /translation="MRPFFVGATVLAILGALVFFISPGAVVLHRQIFLELMLPAAYGG
                     FLTAALLDWTGFSGNLKPVATLMAALLLAASAILPFSPQTASFFVAAYWLVLLLFCAR
                     LIWLDRNTDNFALLMLLAAFTVFQTAYAVSGDLNLLRAQVHLNMAAVMFVSVRVSILL
                     GAEALKECRLKDPVFIPNVVYKNIAITFLLLHAAAELWLSAQTAGFTSLAVGFILLAK
                     LRELHHHELLRKHYVRTYYLLQLFAAAGYLWTGAAKLQNLPASAPLHLITLGGMMGSV
                     MMVWLTAGLWHSGFTKLDYPKLCRIAVLLLFMAAVSRAFLMNVNPIFFITVPAILTAA
                     VFVLYLLTFVPIFRANAFTDDPE"
     gene            complement(1178..3367)
                     /locus_tag="WHR98_000266"
     CDS             complement(1178..3367)
                     /locus_tag="WHR98_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEZ2307004.1"
                     /translation="MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMV
                     WETDIAPDMDTARILSIQTTFLDEPPLPESWRDLLSFTSRYYHYPTGQAVFAALPQGL
                     KETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGGMTMAALKQVNAQA
                     AKLIEDWTEQGWIETAEAAKPVLRSCHGQASHAGFVLNAGQRQASDEIQTALGRFQPF
                     LLYGITGSGKTEVYFDAMAKVLAQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLH
                     SQMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPMDDVGLIVVDEEYDGSFKQDNELRY
                     HARDLAVWRAKQGGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDIL
                     NVGRLKLDNGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGYTFGCPNCSA
                     KMVLHQRVRQLRCHHCDHREPIPFKCPDCGNQDLTAVGHGTQRVEETLRAFLPKAAVV
                     RVDRDSTAHKNDWADLYRRIADNEIDILVGTQMLAKGHDFARLNLVIVLNADGSLYSA
                     DFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYVVFAENELNE
                     RQMFAMPPFGFQTAVRADAPRVADAVEFLNAAKETLVPLLPESVSQFGAAPMLMVRLA
                     ERERAQIFLESPSRQDLHRAVSLWVQVLQQNRDGKIRWSVDVDPQEA"
     gene            3506..4288
                     /locus_tag="WHR98_000267"
     CDS             3506..4288
                     /locus_tag="WHR98_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HEZ2307005.1"
                     /translation="MKTKLIKILTPFTVLPLLACGQTPVSNANAEPAAKAESAGKSVA
                     ASLKARLEKTYSAQDLKVLSVSETPVKGIYEVVVSGRQIIYTDAEGGYMFVGELINID
                     TRKNLTEERAADLNKIDFASLPLDKAIKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEK
                     MTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSICDNPVA
                     ETTSLGEQFGFNGTPTLVFPNGRSQSGYSPMPQLEEIIRKNQ"
     gene            complement(4702..6636)
                     /locus_tag="WHR98_000268"
     CDS             complement(4702..6636)
                     /locus_tag="WHR98_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MacB family efflux pump subunit"
                     /protein_id="HEZ2307006.1"
                     /translation="MSLIECKNINRYFGSGENRVHILKDISLSIEKGDFVAIIGQSGS
                     GKSTLMNILGCLDTAGSGSYRIDGIETAKMQPDELAALRRERFGFIFQRYNLLSSLTA
                     RDNVALPAVYMGAGGKERSARADKLLQDLGLASKEGNKPGELSGGQQQRVSIARALMN
                     GGEIIFADEPTGALDTASGKNVMEIIHKLHEAGHTVIMVTHDPGIAANANRVIEIRDG
                     EIISDTSKNPEIPASNVGRIQEKASWSFYYDQFVEAFRMSVQAVLAHKMRSLLTMLGI
                     IIGIASVVSVVALGNGSQKKILEDISSIGTNTISIFPGRGFGDRRSGRIKTLTIDDAK
                     IIAKQSYVASATPMTSSGGTLTYRNTDLTASLYGVGEQYFDVRGLKLETGRLFDENDV
                     KEDAQVVVIDQNVKDKLFADSDPLGKTILFRKRPLTVIGVMKKDENAFGNSDVLMLWS
                     PYTTVMHQITGESHTNSITVKIKDNANTQVAEKGLTDLLKARHGTEDFFMNNSDSIRQ
                     IVESTTGTMKLLISSIALISLVVGGIGVMNIMLVSVTERTKEIGIRMAIGARRGNILQ
                     QFLIEAVLICVIGGLVGVGLSAAVSLVFNHFVTDFPMDISAASVIGAVACSTGIGIAF
                     GFMPANKAAKLNPIDALAQD"
     gene            complement(6702..7880)
                     /locus_tag="WHR98_000269"
     CDS             complement(6702..7880)
                     /locus_tag="WHR98_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MacA family efflux pump subunit"
                     /protein_id="HEZ2307007.1"
                     /translation="MAKMMKWAAVAAVAAAAVWGGWSYLKPEPQAAYITETVRRGDIS
                     RTVSATGEISPSNLVSVGAQASGQIKKLYVKLGQQVKKGDLIAEINSTSQTNTLNTEK
                     SKLETYQAKLVSAQIALGSAEKKYKRQAALWKDDATAKEDLESAQDALAAAKANVAEL
                     KALIRQSKISINTAESELGYTRITATMDGTVVAILVEEGQTVNAAQSTPTIVQLANLD
                     MMLNKMQIAEGDITKVKAGQDISFTILSEPDTPIKAKLDSVDPGLTTMSSGGYNSSTD
                     TASNAVYYYARSFVPNPDGKLATGMTTQNTVEIDGVKNVLIIPSLTVKNRGGKAFVRV
                     LGADGKAAEREIRTGMRDSMNTEVKSGLKEGDKVVISEITAAEQQESGERALGGPPRR
                     "
     gene            8106..8495
                     /locus_tag="WHR98_000270"
     CDS             8106..8495
                     /locus_tag="WHR98_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HEZ2307008.1"
                     /translation="MKNVQKGFTLLELMIAVAILGILTLITYPSYKTYIRRIRLSEVK
                     STLLMNAQTMERYYRQKGTFENYDKNKLKQNKYFNVTLSKVSPDHFTLQADPNPTTND
                     GETCVVTLNDGGTIAASGTNQSCPGFD"
     gene            8779..9825
                     /gene="adhP"
                     /locus_tag="WHR98_000271"
     CDS             8779..9825
                     /gene="adhP"
                     /locus_tag="WHR98_000271"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
                     /protein_id="HEZ2307009.1"
                     /translation="MKMQAVVVNKNVAGDVEIVEREVRPLEYGEALVEVEYCGVCHTD
                     LHVAAGDYGEKPGRVLGHEGIGLVKEVADGVKNLKVGDRVSIAWLFQSCGSCEYCNTG
                     RETLCRSVLNAGYTADGGMATHCIVSADYAVKVPEGLDPAQASSITCAGVTTYKAIKV
                     SSVRPGQWIAIYGAGGLGNLGVQYAKKVFGAHVVAIDINDEKLAFAKESGADLVINAA
                     KEDAAKVIQEKTGGAHVAIVTAVSAAAFNSAVNCVRAGGRVVAIGLPPESMDLSIPRL
                     VLDGIEVVGSLVGTRKDLEEAFQFGAEGLVVPKVQLRALDEAPAIFQEMREGKITGRM
                     VIDMKKECGCGHHH"
     gene            complement(9990..13475)
                     /gene="smc"
                     /locus_tag="WHR98_000272"
     CDS             complement(9990..13475)
                     /gene="smc"
                     /locus_tag="WHR98_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HEZ2307010.1"
                     /translation="MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAV
                     RWVLGEASAKQLRGESMQDVIFNGAATRRPAPRASVELVFDNSDHSLQGAWGQYAEVS
                     IKRQLTRQGESTYFINNQTVRRRDITDLFLGTGVGARGYAVIEQGMISRIIEARPEEL
                     RAYIEEAAGVSKYKERRKETEGRLKDTREHLQRLGDLQNELARQVEKLEKQAETAERY
                     KSLTAQLNQQQDLLDYAQWQQSLAAADKATAQHQSLQAQQDETAAQVQALNDEVHALQ
                     TAEQSQQQAVHELSNKRGVLREQIARLEEQIRHQQNLHQRIERDKQAAQAQMQRIHQE
                     QQQIRVQLEENELQAEEKQTELAEWAMQVAEHEERLPELEEAQATLNAAFQTRQDEAN
                     RIRRELALKQQQLAHAEQTVAKHEERKGRLKQENQALNLPDEAETAAAQEAAALLQNR
                     QEHYEEQIIAAEEALHAAREAFQTASNRFQSLKQQHITLQAQQQALSQILSQQQEAAD
                     FWQASDHAAAPQLWQHITAPAEWQHALSVILAERLHARAVPQGFVPPEPLPQGQAAWL
                     SDGLSGGIKKSLPVQALLNQIQAQPPFQTALHHWLDGVLCAPDLSYALAHQSDLGAHQ
                     IWLTPEGHQVDKVSVLLYAKPAQESLIAQKARLDGIASELDNLAPELSADEAAFKQAE
                     AAVRSSEVQHKNLMQQQQQHTRQYSQAQQRAAELLARTNQGQIRREHIERELAQLAEE
                     QTVLQHTSDGLSDDIVTLQEAAAELEHQQQTTAHSRQEQQGRLKQAQLALLEANRQYG
                     LAEVAVHKLNQQKQNYRQQIAQLEQQTLDWQERQQELALAYETEFQNDEQHIKLEELS
                     EAVQTLDEEYIVVQEKLAQIQEQGREQYAKVQTLQTKLPQLQAATQTALLQQQEALIN
                     AKRYHQNLTERAADLDALEALAKESPKVLNSSIGSLSQQIEALGAVNLAALQELEEAR
                     ERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFFPTLFGGGE
                     ATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSLNPAPFCL
                     LDEVDAPLDDANTSRFCNLVKEMSAQTQFLYISHNRLTMEMAEQLVGVTMQEKGVSRV
                     VAVDIKQALEMAEAV"
     gene            complement(13554..13700)
                     /locus_tag="WHR98_000273"
     CDS             complement(13554..13700)
                     /locus_tag="WHR98_000273"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307011.1"
                     /translation="MSWRIITRPAAGQYGKCRAKHRALAESGFGALKMPSEGFRRHRG
                     CGMR"
     gene            13724..14446
                     /gene="lpxH"
                     /locus_tag="WHR98_000274"
     CDS             13724..14446
                     /gene="lpxH"
                     /locus_tag="WHR98_000274"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEZ2307012.1"
                     /translation="MKPAYFISDLHLSEKQPELTALLLRFLRSSAARQARAVYILGDL
                     FDFWVGDDEVSELNTSVAREIRKLSDKGVAVFFVRGNRDFLIGQDFCRQAGMTLLPDY
                     SVLDLFGCKTLICHGDTLCTDDRAYQRFRKIVHRKRLQKLFLMLPLKWRTRLATKIRR
                     VSKMEKQVKPADIMDVNAAFTARQVRAFNAERLIHGHTHREHIHHENGFTRIVLGDWH
                     NDYASILRVDGDGAVFVPLEKY"
     gene            14715..16301
                     /locus_tag="WHR98_000275"
     CDS             14715..16301
                     /locus_tag="WHR98_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEZ2307013.1"
                     /translation="MALFLSIFPIVLLIWLMVKKNSMPSYVALPITAVLIYAIKLFYF
                     GDAGMLLNATAASGLVKTLTPITVIFGAIMFNRMMETTGCIDVIRKWLATISPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILMSLGFNPLKVAIFTLVMNSVPVSFGAVGT
                     PTWFGFAPLNLSAEDILAIGRQTGVMHFFAGFVIPVIGLGFIVPWSEIRKNLGFVAIA
                     VFSCTIPYVALAMVNEEFPSLVAGAIGLMVSVFAANQGWGLSKDHAKDPNAEKVPFAQ
                     VAKALAPLGMLIGMLVVTRIKQLGIKGILTSKEEWFSFQLPFDLSKITVSDSLTITFG
                     NIFGQDVSASYQTLYVPAWIPFVLTVWICILLYKTKFKDAWTIYSVTFNQTKKPLLAL
                     MGALIMVQLMLVGGDNSMVKIIGKEFAAMAGEHWVYFSPYLGAIGAFFSGSNTVSNLT
                     FGPIQQQIALDTGLSVTLILALQSVGGAMGNMVCLNNIIAVCTVLDVKNSEGAIIKKT
                     VIPMAIYGVIAVVAAMIFFL"
     gene            complement(16469..16672)
                     /locus_tag="WHR98_000276"
     CDS             complement(16469..16672)
                     /locus_tag="WHR98_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HEZ2307014.1"
                     /translation="MDNLNLQEISVLPENLPLYCSGPDNEQWNGHPRVFLPLCEGESG
                     SVACPYCGTRYRLDGKMPHHHYA"
     gene            16788..17285
                     /locus_tag="WHR98_000277"
     CDS             16788..17285
                     /locus_tag="WHR98_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-mimic protein DMP19"
                     /protein_id="HEZ2307015.1"
                     /translation="MTALTLPEDIRQQEPSALLYPLVSAYLEHTAQTGDESLSCLSDD
                     QHTLTAFCYLDSQVEEGGFVQLIASGYGEYIFRNPLADSLRRWKIKAVPKVLDKAKAL
                     YEQHGKTIETLADGGADIESLRKQFPDFEEWDGAYYEAAEQDLPLLAEHIQSNWETFA
                     HIGQA"
     gene            17367..18560
                     /locus_tag="WHR98_000278"
     CDS             17367..18560
                     /locus_tag="WHR98_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HEZ2307016.1"
                     /translation="MFFKHIEAAPADPILGLGEAFKAETRPEKVNLGIGVYKDASGAT
                     PLVKAVKEAEKRLLESETTKNYLTIDGVADYNEQTQILLFGKDHEIIASRRAKTAQSL
                     GGTGALRIAAEFAKRQLNAQTIWISNPTWPNHNAIAKAVGIQDKPYRYYDAAKHGLDW
                     DGMIEDLSQAQKGDIVLLHGCCHNPTGIDPTPEQWETLAKLSAEKGWLPLFDFAYQGF
                     GNGLEEDAYGLRVFLKHNTELLIASSYSKNFGMYNERVGAFTLVAEDEETAARAHSQV
                     KTIIRTLYSNPASHGANTIALVLKNDDLKAQWIAELDEMRGRIKAMRQKFVGLLKAKG
                     ASQNFDFIIKQNGMFSFSGLTPEQVDRLKNEFAIYAVRSGRINVAGITDNNIDYLCES
                     IVKVL"
     gene            complement(18964..19899)
                     /gene="hemC"
                     /locus_tag="WHR98_000279"
     CDS             complement(18964..19899)
                     /gene="hemC"
                     /locus_tag="WHR98_000279"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEZ2307017.1"
                     /translation="MNPKKLVIASRESLLAMWQAKHIQGRLKALYPDCEVEILGMTTR
                     GDQILDKTLSKVGGKGLFVKELEQALYDGRADLAVHSIKDVPMDLPEGFALAAIGERA
                     NPFDAFVSNQYTRLEEMPEGAVVGTSSLRREAQLRARYPHLLIKPLRGNVQTRLSKLD
                     NGEYDAIILAAAGLQRLKLDGRIRMILSESDSLPAAGQGALGIEIAAHREDLYEVLKP
                     LNHDTTHACVTAERALARALGGSCQVPLAAYCTEENGLLTLRGLVGHPDGSVVLQADA
                     QAPAEYADALGRAVAKKLADDGARELIGAVLNTEN"
     gene            20018..20533
                     /gene="ybeY"
                     /locus_tag="WHR98_000280"
     CDS             20018..20533
                     /gene="ybeY"
                     /locus_tag="WHR98_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEZ2307018.1"
                     /translation="MKRTKKYPFLTLQRQRFHLNFENASSAAGIPAERDFYRWAWSAL
                     KNEYRRADISLILLDEEEARDYNRDYRGKDYATNVLSFALNEGETLPCQVSEKLYGDL
                     IICPQVVLKEAAEQGKTPEQHFAHLTIHGTLHLMGYDHIEDDEAEIMEAEEIRLMRAA
                     GFPNPYQEDGH"
     gene            20535..21359
                     /locus_tag="WHR98_000281"
     CDS             20535..21359
                     /locus_tag="WHR98_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEZ2307019.1"
                     /translation="MDGAQPKTNFFERLIARLAREPDSAEDVLNLLRQAHEQEVFDAD
                     TLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKD
                     EVLGILHAKDLLKYMFNPEQFHLKSILRPAVFVPEGKSLTALLKEFREQRNHMAIVID
                     EYGGTSGLVTFEDIIEQIVGDIEDEFDEDDSADNIHAVSSERWRIHAATEIEDINTFF
                     GTEYSSEEADTIGGLVIQELGHLPVRGEKVIIGSLQFTVARADNRRLHTLMATRVK"
     gene            complement(21489..22868)
                     /gene="nhaC"
                     /locus_tag="WHR98_000282"
     CDS             complement(21489..22868)
                     /gene="nhaC"
                     /locus_tag="WHR98_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HEZ2307020.1"
                     /translation="MFAFKSLLDMPRGEALAVVVALIAAMGYTIISLEWLPHMSIIAA
                     IVVLILYGLVRGLKYNDMQQGMIGALNQGMGAIYLFFFIGLMVSALMMSGAIPTLMYY
                     GFGLISPTYFYFSAFALCSVIGVSIGSSLTTCATVGVAFMGMAAAFHADMAMTAGAIV
                     SGAFFGDKMSPLSDTTGISASIVGIDLFEHIKNMMYTTIPAWLISAALMLWLLPSVAA
                     QDLNSVESFRSQLEATGLVHGYSLIPFALLVVLALMRVNAVVAMLFTVMVAVAVTYLH
                     STPDLRQLGAWFYGGYKLEGEAFKDIAKLISRGGLESMFFTQTIVILGMSLGGLLFAL
                     GAIPSLLDAVRSFLTNAGRATFSVAMTSVGVNFLIGEQYLSILLSGETFKPVYDKLGL
                     HSRNLSRTLEDAGTVINPLVPWSVCGVFISHALGVPVWEYLPYAFFCYLSLALTLLFG
                     WTGLTLSKK"
     gene            complement(23159..24382)
                     /locus_tag="WHR98_000283"
     CDS             complement(23159..24382)
                     /locus_tag="WHR98_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar MFS transporter"
                     /protein_id="HEZ2307021.1"
                     /translation="MSAQSQNNHTSPLVVLTTLFFMMGFITCMNDILIPHLKEIFDLS
                     YVQAMLIQFCFFTAYAVMSIPMGAFVGKVGYKNGVIGGFLLTAVGCLLFYPAAGSHSY
                     AVFLGALFILASGVTLLQVAGNPYVTLLAKPGKESATLTLVQAFNALGTTIAPQIGAF
                     LILADATQTVSKAEQISSVQIPYLGLAGLLIILAVFVKMIRLPDARKIAAEESAHNHD
                     GKTSVWQYKHLVFGTAGIFCYVGAEVSIGSLMVNVLGYLKGLDHASAAHYLSFYWGGA
                     MVGRFLGSAVMAKFAPNRYLAFNASAAVVLLAVAMATGSGNADVAMWSLLAIGFFNSI
                     MFPTIFSLATKGLGKFTNAASGVLCTAIVGGAVVPVVQGWVADTYTLMSSFVVSVICY
                     LYIVFFAVYGYRADK"
BASE COUNT         5690 a         7103 c         6377 g         5646 t
ORIGIN      
        1 aaacggcttg atttgagttt tggtattttt gcccgacggg gtgaaaaata cagttgctat
       61 gcgcccgttt ttcgtcggcg cgacagtgct tgccatactc ggcgcgttgg tgtttttcat
      121 cagccccggt gccgtcgtcc tgcaccgcca aatcttctta gaactcatgc tacctgcggc
      181 atatggtggt ttcctgactg cggctttgtt ggactggacg ggtttttcgg gtaacctgaa
      241 acctgtcgcg actttgatgg cggcattatt gctcgccgca tccgctatac tgcccttttc
      301 gccgcaaact gcctcgtttt tcgtcgccgc ctattggctg gtgttgctgc tgttctgcgc
      361 ccggctgatt tggctagacc gaaacaccga caacttcgcc ctgctaatgt tacttgccgc
      421 gttcactgtt tttcagacgg catatgccgt cagcggcgat ttgaacctgt tgcgcgcgca
      481 agtgcatcta aatatggcgg cggtgatgtt cgtatccgtg cgcgtcagta ttcttttggg
      541 cgcggaagcc ctgaaagaat gccgtctgaa agacccagta ttcatcccca atgtcgtcta
      601 taaaaacatc gccattacct tcctgctcct gcacgccgcc gccgaacttt ggctgtctgc
      661 gcaaaccgcc ggttttacct cgctcgccgt cggctttatc ctgcttgcca agctgcgtga
      721 gcttcaccat cacgaactcc tgcgcaaaca ctacgtccgc acttattacc tgctccaact
      781 ctttgccgcc gcaggctatt tgtggacagg cgcggcgaaa ttacaaaacc tgcccgcctc
      841 cgcgcccctg cacctgatta ccctcggtgg catgatgggc agcgtgatga tggtgtggct
      901 gactgccgga ctgtggcaca gcggctttac caagctcgac tacccgaaac tctgccgcat
      961 cgccgtcctc ctgctcttta tggctgccgt ctcgcgtgct ttcttgatga acgtgaatcc
     1021 aatattcttc atcaccgtcc ccgcgattct gaccgccgcc gtgttcgtgc tttacctgct
     1081 gacattcgta ccgatctttc gggcgaacgc gtttacagac gatccggaat aaaaatgccg
     1141 tctgaaacgg tttcagacgg catcgtattg ccgataatca agcctcctgc ggatcgacat
     1201 ccaccgacca tctgattttg ccgtccctgt tttgctgcaa cacctgcacc cacaaactca
     1261 cggcgcggtg caaatcctgt cgggacgggg attcgaggaa gatttgcgcg cgttcgcgtt
     1321 cggcgaggcg caccatcagc atcggggcgg cgccgaactg tgaaacgctt tcgggcaaca
     1381 gcgggaccag ggtttctttg gcggcgttga gaaactccac cgcatcggca acgcgcggcg
     1441 cgtcggcgcg gacggcggtc tggaaaccga agggcggcat ggcgaacatt tgccgctcat
     1501 tcaattcgtt ttcggcaaac acgacgtagt cctgcgcttt gacggcggcg aagacgggat
     1561 gttcgggcag ttgggtctgt atcagcacct tgccgggctt gtcggcgcgc cccgccctgc
     1621 cggacacctg catcagctcg gcaaacagcc tttccggcgc gcggaaatcc gcgctgtaca
     1681 ggctgccgtc ggcgttcaat acgataacga ggttgagccg cgcgaaatca tgacctttgg
     1741 cgagcatctg cgtgccgacc agaatatcga tttcgttgtc ggcgatgcgg cggtacaaat
     1801 ccgcccagtc gtttttgtgc gccgtactgt ccctatcgac gcggacgacg gcggccttgg
     1861 gcaggaaagc gcgcagggtt tcttcgacgc gctgcgtgcc gtgtccgacg gcggtcaggt
     1921 cttgattgcc gcagtcgggg catttgaacg gtatgggttc gcggtggtcg cagtggtggc
     1981 agcgcagttg gcggacgcgt tggtgcagca ccattttggc ggagcagttc gggcagccga
     2041 aggtataacc gcagtcgccg caaaacagcg cgggcgcgaa gccgcgacgg ttgaggtaca
     2101 ccaacgacat gccacctgct tcaaagttct gtttcaaaag ctgcaaggct tgcggcgaga
     2161 agccgttgtc aagtttcaga cggcctacgt tgaggatgtc cacttgcggc agttgcgcgg
     2221 cggtatgggc gcgttcggtc agttgcagca ggcggtacgc gccgctttgc gccttgtgcc
     2281 agctctccaa gctgggggtg gcactgccca atatgatcgg gcagccgccc tgcttcgccc
     2341 gccacaccgc caaatcgcgg gcgtggtagc gcaattcgtt gtcctgtttg aacgagccgt
     2401 cgtattcctc atcgaccaca atcagcccga catcatccat cggcgtgaac accgccaacc
     2461 gcgtgccaat caccagcttc gcctgcccca acatcgcgcg caaataatcc tgcgtgcgcc
     2521 tgcctgccgc catctggctg tgcaacacgg cggtcggcac gtcggcaaaa cggttttcta
     2581 cccgcttcaa aagctgcggc gtgaggttga tttcgggcaa cagaaacaac acctgccgcc
     2641 cctgcgccaa cactttcgcc atcgcatcaa aatacacctc ggtcttgccg ctgccggtga
     2701 tgccgtacag caaaaacggc tgaaaccgtc ccaatgccgt ctgaatctca tcggaagcct
     2761 gccgctggcc ggcgttcaac acaaatccgg cgtgcgaagc ctgcccgtgg cacgacctta
     2821 aaaccggttt cgccgcttcc gccgtttcaa tccagccctg ctccgtccaa tcttcgatta
     2881 atttcgccgc ctgcgcgttc acctgcttca acgctgccat cgtcatcccg cccgacagca
     2941 gcgcgtccca caaagccgct tttttgttga accgcgccgg cggcggcgtt tgcgccctgc
     3001 ccgcttcgtt caacgcataa aacaacggcg gctgcggcat ttccaccgcg cgcgtttcct
     3061 tcaaaccctg cggcagcgcg gcaaacaccg cctgccccgt cggatagtgg taataacgcg
     3121 acgtaaacga gagcaaatca cgccagcttt caggcaacgg cggctcgtct aaaaaggtcg
     3181 tctgaatact caaaatccgc gccgtatcca tatccggcgc aatatccgtt tcccacacca
     3241 tcccgaccac ggttttattg cggaaaggca caagcacccg cgttcccgga ggaagcggat
     3301 cggaatggga ataagtcaaa aggccgtctg aaagcggcac gtttacggcg atgcggtggt
     3361 agatcataca ggcaggcaaa tcattttttt gcgtatttta acaggcggaa gctattttca
     3421 gacgataaat tgagcctagg cgcaatgcag gcgcaacaga gatttgatac aattccgcct
     3481 ttccaacacg cgcaatcatc tttatatgaa aaccaagtta atcaaaatct tgaccccctt
     3541 taccgtcctc ccgctgctgg cttgcgggca aacgcccgtt tccaatgcca acgccgaacc
     3601 cgccgccaaa gccgagtccg ccggcaaatc cgttgccgcc tctttgaaag cgcgtttgga
     3661 aaaaacctat tccgcccaag atttgaaagt gttgagcgtt agcgaaacac cggtcaaagg
     3721 catttacgaa gtcgtcgtca gcggcagaca gattatctac accgatgccg aaggcggcta
     3781 tatgttcgtc ggcgaactca tcaacatcga cacgcgcaaa aacctgaccg aagaacgcgc
     3841 cgccgatttg aacaaaatcg acttcgcctc cctgcctttg gacaaagcca tcaaagaagt
     3901 gcgcggcaac ggcaagctga aagtcgccgt cttttccgac cccgattgtc cgttctgcaa
     3961 acgcttggaa cacgagtttg aaaaaatgac cgacgtgacg gtttacagct ttatgatgcc
     4021 cattgccggc ctgcaccctg atgccgcgcg caaggcgcaa atcttatggt gtcagcccga
     4081 ccgcgccaaa gcgtggacgg attggatgcg taaaggcaaa ttcccggtcg gcggcagcat
     4141 ctgcgacaat cccgtcgcgg aaaccacttc cttgggcgaa caattcggct tcaacggcac
     4201 gccgaccctc gtcttcccca acgggcgcag ccaaagcggc tacagcccga tgccccaact
     4261 ggaggaaatc atccgcaaaa atcaataatc catccgcaaa aaaggcttgg aaaattccaa
     4321 gccttttttg cgggaaatgc cgcctgaaaa ccaatccgcc ctgaaagtta gcaagccaac
     4381 aaacacatcc taacccattg aatgattgaa aataataaat tgaacaatac gaagccccgc
     4441 cgccgttccc acgcgggcgg gaatctggaa tattgagtta ccgtgattta tccgaaacaa
     4501 gcaaagccga acgaaccgaa ttcccgtctt tacgggaatg acgggactcg agcgttgtgt
     4561 gcaatcatcg aacccccacc gccgtcattc ccacgcaagt gggaatctag aacgtagaat
     4621 ctaagaaacc gtttttgtcc aataagtttc tgctccaaaa tgaccggtcc tgcagcttca
     4681 gacggcatct ttgtgccaac ctcaatcctg cgccaatgcg tctatcggat tgagtttggc
     4741 tgctttattg gcaggcataa agccgaacgc gatgccgatt ccggtcgaac aggcgaccgc
     4801 cccgataacg gatgccgccg aaatgtccat cgggaagtcg gttacaaaat gattgaacac
     4861 gaggctgacg gcggcggaca aacccacgcc gaccaaaccg ccgatgacgc agattaacac
     4921 cgcctcaatc aaaaactgct gcaagatatt gccgcgccgc gcgccgattg ccatccgtat
     4981 gccgatttct ttggtgcgct cggtaacgga caccagcatg atgttcatca cgccgatgcc
     5041 gccgactacc aatgaaatca gggcgatgga ggaaatcagc agcttcatcg taccggtggt
     5101 gctttcgact atctgcctga tgctgtcgct gttgttcatg aagaaatctt ccgtgccgtg
     5161 ccgcgctttg agcagatcgg tcagcccttt ttcggcaacc tgggtattgg cattgtcttt
     5221 gattttgacg gtgatggagt tggtgtggct ctcgcctgtg atttggtgca tcaccgtcgt
     5281 atagggcgac caaagcatca gcacgtcgga attgccgaaa gcgttttcgt cttttttcat
     5341 cacgccgatg acggtcaagg ggcgtttcct gaacaaaatg gttttaccca acggatccga
     5401 gtccgcaaag agtttgtctt tgacattttg gtcgatgacg acgacctgcg cgtcttcttt
     5461 cacatcgttt tcgtcaaaca gccgccccgt ttccagcttc agtccgcgca cgtcgaaata
     5521 ttgttcgccc acgccgtaca aagaagcggt caggtcggta ttgcggtaag tcagcgtgcc
     5581 gccgctcgaa gtcatgggcg tggcggaagc aacgtagctt tgtttggcga tgatttttgc
     5641 gtcgtctatg gtcagggttt taatcctgcc gctgcgcctg tcgccgaagc cgcgccccgg
     5701 gaagatgctg atggtgttcg tccctatcga actgatgtct tcaaggattt ttttctgcga
     5761 accattgccc aatgcgacga cggagacaac cgaagcgata ccgatgatga tgccgagcat
     5821 cgtcagaagc gaacgcattt tgtgcgccaa tactgcttgc accgacattc tgaaggcttc
     5881 gacaaactgg tcgtaataaa acgaccacga ggctttttcc tgaatcctcc cgacattgct
     5941 tgcggggatt tctggatttt tcgaggtgtc ggaaatgatt tcgccgtccc ggatttcgat
     6001 gacgcggttg gcattggcgg cgatgccggg gtcgtgcgtg accataatga cggtatgccc
     6061 ggcttcgtgc agcttatgga tgatttccat cacgtttttg ccgctggcgg tatcgagcgc
     6121 gccggtcggc tcgtcggcga agatgatttc tccgccgttc atcagggcgc gggcgatgga
     6181 gacgcgctgc tgctgtccgc ccgagagttc gccgggcttg ttgccctctt tgcttgccaa
     6241 acccaaatcc tgcaagagtt tgtccgcccg cgcggaacgc tctttgccgc ccgcgcccat
     6301 atagacggct ggcagcgcga cgttatccct tgcggtcagc gagcttaaga ggttgtagcg
     6361 ttggaagata aagccgaagc gttcgcggcg caatgccgcc agttcgtcag gctgcatttt
     6421 ggcagtttcg atgccgtcga ttcggtacga accggaaccg gcggtatcca aacaaccgag
     6481 tatgttcatc agcgtggact tgcccgaacc ggactgcccg atgatggcga caaaatcgcc
     6541 cttctctatc gacaggctga tgtctttcaa aatatggacg cggttctcgc cgctgccgaa
     6601 atagcggttg atgtttttac attcgatcaa gctcataata ttccgtaaat caataacaaa
     6661 tgccgtctga aaccgtttcc gtgttcagac ggcatattcg tttatcggcg cggcgggccg
     6721 cctagggcgc gttcgccgct ttcctgttgc tcggcggcgg ttatttcgga gatgaccact
     6781 ttgtccccct ctttcaaccc gctttttact tcggtattca tactgtctct cataccggtc
     6841 cggatttcgc gttccgccgc cttgccgtcc gcacccaaca cgcgcacaaa cgccttgccg
     6901 ccgcgatttt tcacggtcag cgacggaata atcagcacat ttttcacgcc gtcgatttca
     6961 accgtattct gcgtcgtcat ccccgtggcg agtttgccgt ccggattcgg cacaaacgaa
     7021 cgggcataat agtagaccgc attggaagcc gtatccgtac tgctgttgta accgcccgac
     7081 gacatcgtgg tcagcccggg gtcgacgctg tcgagcttcg ccttaatcgg cgtatccggt
     7141 tcggacaaaa tcgtaaacga aatatcctgc cccgccttca ccttggtaat atcgccctcg
     7201 gcaatctgca ttttgttcaa catcatatcc agattcgcca attggacaat cgtcggcgta
     7261 gactgcgccg cgttcacagt ctgcccctct tccacgagaa tcgccaccac cgtgccgtcc
     7321 atcgttgcgg taatgcgcgt gtagcccaat tccgactcgg cggtattgat ggaaattttg
     7381 ctctgtctga ttaaagcctt cagctcggca acattggctt tggcggcggc aagcgcatcc
     7441 tgtgcgcttt ccaaatcttc tttagcggtc gcatcatcct tccacaacgc cgcctgacgc
     7501 ttatatttct tctccgcgct gcccaatgca atctgtgccg acaccagctt cgcctgatac
     7561 gtttccaatt tggatttttc cgtattgagc gtattggtct gcgaggtcga attgatttcc
     7621 gcaatcaaat cgcccttttt aacctgttgc ccgagtttga cataaagttt cttaatctgc
     7681 cccgatgcct gcgcgccgac cgataccagg ttggacggcg aaatctcccc tgttgcagaa
     7741 accgtccggc tgatgtcgcc gcgcctgacc gtttccgtaa tataagcagc ctgcggctcg
     7801 ggcttcagat aagaccatcc gccccaaacc gctgccgccg cgaccgccgc aacagccgcc
     7861 catttcatca tttttgccat gttttcaatt ctctgtatgc gtcaatccca taaatcggaa
     7921 gcggattcta ccgcaagtcc ctgccccatc caaggcggca aactgccgac aataaaaata
     7981 accatttgtt ttaaatggct tatacaatct gctttcccga aaatttcaat ccgtttacat
     8041 attccgccat ttccgatacg gcgttataat gtcgccgacc gacaaacaaa tggaaacaca
     8101 ttgctatgaa aaacgttcaa aaaggcttta cgctgctcga gctgatgatt gccgtcgcca
     8161 tcctcggcat cctgacgctc atcacctacc cttcctataa aacctacatc cggcgcatcc
     8221 gcctgtcgga agtcaaatcc accctgctga tgaacgcgca gaccatggaa cgttactacc
     8281 gccaaaaagg gacgtttgaa aactacgata aaaacaaact gaaacaaaac aaatatttca
     8341 acgttacctt aagcaaagtc agccccgacc actttaccct tcaggccgac cccaatccca
     8401 ccaccaacga cggcgaaacc tgcgtcgtta cgctcaacga cggcggtacc attgccgctt
     8461 ccggtacaaa ccaatcctgc cccggcttcg actaatcctc cgccgaagcc cgcaaacccg
     8521 taaagatgcc gtccggacac agcttcagac ggtatcttta tgggtttgca catccggttt
     8581 ttcaaacttg aaacctgccg cccctcatcc ggcaaccgcc ccgatgccgc gcctttccaa
     8641 gatgttataa tataacatat aatctatatt tttcaacaac ataccacttg acctgtgaga
     8701 tgcggaagcg tatgcttacc cttatatcgg acaacattcc gtttacaggt ttttttgccg
     8761 taactaagga gcgcaatcat gaaaatgcag gcagttgttg tgaataaaaa tgtagcgggc
     8821 gatgtggaaa tagtcgaacg cgaggttcgc ccgttggaat acggcgaggc gttggtcgaa
     8881 gtcgaatatt gcggcgtgtg ccacaccgac ctgcacgttg cggcaggcga ctacggcgaa
     8941 aaaccgggcc gcgtgctggg acacgagggc atcggtttgg ttaaagaagt tgccgacggt
     9001 gtgaaaaatc tgaaagtcgg cgaccgcgtc agcatcgcct ggctgttcca aagctgcggc
     9061 tcttgcgaat actgcaatac cggccgcgaa accctgtgcc gctctgtatt gaacgctggc
     9121 tatactgccg acggcggcat ggcgacccac tgtatcgtga gtgccgatta cgcggtcaaa
     9181 gtcccagaag gcttggatcc tgcgcaagct tcgagcatta cttgtgccgg tgtaaccact
     9241 tataaagcca ttaaagtttc cagtgttcgt ccgggacagt ggattgccat ctacggcgcg
     9301 ggcggtttgg gcaacttggg ggtccaatac gcgaaaaaag tatttggcgc acacgtcgtc
     9361 gccatcgaca tcaacgatga aaaactggct tttgccaaag aaagcggcgc agatttagtc
     9421 atcaacgctg ccaaagaaga tgccgccaaa gtgattcagg aaaaaaccgg cggtgcacac
     9481 gtagccattg ttaccgccgt atccgccgcc gcattcaact ctgccgtgaa ttgcgtccgc
     9541 gcgggcggac gtgtggttgc catcggactg ccgccggaat cgatggattt gtccatcccg
     9601 cgtttggttt tggacggcat cgaagtggtc ggctctttgg tcggcacgcg caaagatttg
     9661 gaagaagcct tccaattcgg cgcggaaggt ttggttgtgc cgaaagtcca actgcgtgct
     9721 ttggatgaag cacccgccat tttccaagaa atgcgcgaag gcaaaatcac cggtcgtatg
     9781 gtgatcgata tgaaaaaaga atgcggctgc ggccatcacc actgatttga cgtggcagta
     9841 cacatcgaaa tgccgtctga acgctgttca gacggcattt tttatggatt tggatttgat
     9901 tttaatctgt tctgtttgaa ataccgtctg aaaaccctta tcgcaacacg tcattaaaaa
     9961 cggcaagatt cagccgttct gcaacccgtt caaacggctt ccgccatttc caacgcctgc
    10021 ttgatgtcca cggcgacgac gcgcgatacg cctttttcct gcatggttac accgaccagc
    10081 tgttccgcca tttccatggt caggcggttg tgtgagatgt agaggaattg ggtttgcgcc
    10141 gacatttctt tgaccaaatt gcagaagcgc gaggtgttgg catcgtccag cggggcatcg
    10201 acttcgtcca aaaggcagaa cggagcaggg ttgaggctga acagggcgaa cacgaggctc
    10261 atggcggtga gggctttttc gccgccggaa aggaggtgga tggtgctgtt tttcttgccg
    10321 ggcgggcgcg ccatgatgga cacgccggcg gtcaggaggt cgtcgcctat cattttgagg
    10381 gtagcttcgc caccgccgaa cagggtcggg aagaaagttt ggactttgcc gttgacggca
    10441 tcgaaggttt ctttgaaacg cgctttggtt ttgtcgtcga tttgggcgat ggcttcttcc
    10501 aaaagggtga tggctgcctg cacgtcttcg ctttggctgc ggtagtagcc gtcgcgttcg
    10561 cgcgcttctt cgagttcttg cagggcggcg aggttgaccg cgccgagtgc ttcgatttgt
    10621 tgcgaaaggc tgccgatgct gctgttcaat actttcggcg attctttcgc caacgcttcg
    10681 agcgcgtcca aatcggcggc gcgttcggtc aggttttgat ggtagcgttt ggcgttgatc
    10741 agggcttcct gctgctgcaa caaggcggtt tgggtggcgg cctgaagctg cggcagcttg
    10801 gtttgcaggg tttgcacttt agcgtattgc tccctgccct gttcctgaat ctgcgcgagt
    10861 ttctcttgca caacaatata ttcttcgtcc aaggtctgta cggcttcgct taattcttca
    10921 agcttgatgt gctgctcgtc gttttggaac tcggtttcat aggcgagggc aagctcttgc
    10981 tggcgttcct gccagtctag ggtttgctgt tcgagctggg caatttgctg ccggtagttt
    11041 tgtttttgct ggttgagctt gtgaacggcg acttcggcca gcccgtattg gcggttggct
    11101 tccaacaggg caagctgcgc ctgtttcaga cggccttgct gctcttggcg gctgtgcgcg
    11161 gtggtttgct gctggtgttc gagttcggcg gcggcttcct gcaaggtaac gatgtcgtct
    11221 gaaagcccgt cggacgtgtg ttgcaacacg gtctgctctt ccgccaactg cgccagttcg
    11281 cgctcgatgt gttcgcggcg gatttgccct tggttggtgc gcgccagaag ttcggcggcg
    11341 cgttgctgcg cctgactgta ttggcgcgtg tgctgctgtt gctgctgcat caggttttta
    11401 tgttgcactt cggacgagcg cacggcggct tctgcctgtt tgaacgcggc ttcgtcagcg
    11461 gagagttcgg gggctaggtt gtccagttcg gatgcgatgc cgtcgaggcg cgctttttgg
    11521 gcaatcaggc tttcctgcgc gggcttggca tagagcagga cgctgacttt atcgacctga
    11581 tggccttcgg gcgtaagcca gatttgatgc gcgcccaaat cgctttgatg agcgagggcg
    11641 taactcaaat cgggcgcaca caatacgccg tcgagccagt ggtgcaatgc cgtctgaaac
    11701 ggcggctgcg cttggatttg gttcagcaat gcctgtacgg gcagcgattt tttgatgcca
    11761 ccggagaggc cgtctgaaag ccacgccgcc tgcccctgcg gcaaaggttc ggggggaacg
    11821 aaaccttgcg gcacggcgcg ggcgtgcagg cgttcggcaa ggatgacgga caaggcgtgc
    11881 tgccactcgg cgggcgcggt gatgtgttgc cacagttgcg gcgcggcggc gtggtcgctt
    11941 gcctgccaga agtcggcggc ttcctgctgt tgcgacagga tttgcgacaa cgcctgctgc
    12001 tgcgcctgca aggtgatgtg ttgctgcttc aggctttgga agcggtttga tgccgtctga
    12061 aacgcctcgc gggcggcgtg tagagcttct tcggcggcga tgatttgttc ttcgtaatgc
    12121 tcttgccggt tttgcaacaa ggcggcggct tcctgcgcgg cggcggtttc ggcttcgtcg
    12181 ggcaggttca gggcttggtt ttcctgtttc agacgacctt tgcgctcttc gtgcttggca
    12241 acggtttgtt cggcatgggc aagctgctgc tgcttcaacg ccagttcgcg gcggatgcgg
    12301 tttgcctcgt cctgccgggt ttggaaggcg gcgttgagcg tggcttgggc ttcttccaat
    12361 tcgggcagac gctcttcgtg ttcggcaacc tgcatcgccc attccgccaa ctcggtttgc
    12421 ttttcttctg cctgcaactc gttttcctca agctgcacgc ggatttgctg ctgttcttga
    12481 tggatgcgct gcatctgcgc ctgcgccgcc tgcttgtcgc gttcgatgcg ttggtgcagg
    12541 ttttgctgat ggcggatttg ttcttccaaa cgggcaatct gctcgcgcaa cacgccgcgt
    12601 ttgttgctca attcgtgtac cgcctgctgc tgcgactgtt cggcggtctg caaggcgtgt
    12661 acttcgtcgt ttaacgcctg aacctgcgcg gcggtttcgt cctgctgcgc ctgcaaagac
    12721 tgatgctgcg cggtcgcctt gtcggcggcg gcaagcgatt gctgccattg ggcgtaatcg
    12781 agcaaatcct gctgttggtt caactgcgcg gtcagggatt tgtagcgttc ggcggtttcc
    12841 gcctgttttt ccagcttttc cacctgacgc gccaactcgt tctgcaaatc acccaaacgc
    12901 tgcaaatgct cgcgcgtgtc tttcagacgg ccttccgtct ccttgcggcg ttccttatat
    12961 ttggacacgc ccgccgcctc ctcgatatag gcgcgcaact cctccggccg cgcttcgatg
    13021 atgcgcgaaa tcatcccctg ctcgataacg gcataaccgc gcgcgcccac gccagtaccc
    13081 aaaaacaaat cggtaatgtc gcggcggcgc acggtctgat tattgatgaa ataagtcgat
    13141 tcgccctgac gcgtcaactg ccgcttgatg ctcacctcgg catactgccc ccacgccccc
    13201 tgcaaactgt ggtcgctgtt gtcaaacacc agctccaccg aagccctcgg cgcaggacgg
    13261 cgcgtcgccg caccgttaaa aatcacgtcc tgcatactct cgccgcgaag ctgcttcgcc
    13321 gaagcctcac ccaacaccca gcgcaccgcg tcaatcacat tcgacttgcc gcagccgttc
    13381 ggcccgataa ccgcgacaag ctgccccggc acatgaatcg tggtcgggtc ggtaaaagat
    13441 ttgaagccgg agagtttgat atgggtcagg cgcataatgg tcggaaaaaa taaaaaagaa
    13501 gcgtatttta acggaaatcc cgccgcacca ccccatatct tgccggcaaa accttaccgc
    13561 atcccgcacc ctcgatgccg tctgaagcct tcagacggca tttttaacgc gccgaacccc
    13621 gattccgcca acgcccgatg cttggcgcgg catttgccgt attgccccgc cgccgggcgc
    13681 gttataatcc gccacgacat ccgcccgatt tggaaacctg cctatgaaac ccgcctattt
    13741 catttccgac ctgcatttga gcgaaaagca gcccgaactg accgcgctgt tgctgcgttt
    13801 tttacgttct tccgccgcca ggcaggcgcg ggcggtttac attttgggcg atttgtttga
    13861 tttttgggtg ggcgatgacg aagtttccga gttgaatact tcggttgcgc gtgaaatcag
    13921 gaaattgtcc gacaaaggcg ttgccgtgtt cttcgtcagg ggcaaccgcg acttcctgat
    13981 tggtcaggat ttttgccggc aggcaggcat gacgctgctg ccggattact cggttttgga
    14041 cttgttcggc tgcaaaaccc tcatctgcca cggcgacact ctgtgtacag atgacagggc
    14101 ataccaacgt ttccgcaaaa tcgtgcatcg gaagcggctg caaaaactgt tcctaatgct
    14161 gcccctgaag tggcgcacgc gccttgccac caaaatcagg cgtgtcagca aaatggaaaa
    14221 acaggtcaag cccgccgata ttatggatgt caatgccgcc tttaccgcgc ggcaggttcg
    14281 cgcctttaac gcggaaaggc tgatacacgg gcatacccac cgcgagcata tccatcacga
    14341 aaacggcttt acccgcatcg ttttgggcga ctggcataac gactatgctt caatcctccg
    14401 cgtagacggt gacggcgcgg tattcgtgcc gctggaaaaa tactgaaaat gccgtctcaa
    14461 gcctttcggg cggctttttt tacacgcccc tttcccacac tccctccgcc gcatcatcac
    14521 catccttaac ccgcattaat gggcgttatc gataaaatgc ttgaccgatt acataagatt
    14581 acgtaaagtg tgcaaacgca taacaattgg tcttaccaat ttatctttta accaaaatat
    14641 cgggtgtacg ggatttgaac gtctttccaa acctcgacgc gccttatgat gcaaatgcct
    14701 aaaaaggatt cgttatggca cttttcctca gcatattccc catcgtcctg ctgatttggc
    14761 tgatggtgaa aaaaaacagt atgccctcct acgtcgcgct gccgattacc gcagtgctga
    14821 tttacgccat caaacttttc tacttcggcg atgcgggcat gctgctcaac gccaccgccg
    14881 cttccggcct cgtcaaaacg ctcacgccga ttaccgtgat tttcggcgcg attatgttca
    14941 accgtatgat ggaaaccacg ggctgcattg atgtcatccg caaatggctg gcgaccatca
    15001 gccccaaccc cgtagcgcaa ctgatgatta tcggctgggc ttttgccttt atgattgaag
    15061 gcgcatccgg cttcggcacg cctgccgcga ttgccgcgcc gattctgatg agcttgggct
    15121 tcaacccgtt gaaagtggcg attttcactt tggtgatgaa ctccgtcccc gtctctttcg
    15181 gcgcggtcgg tacgccgacc tggttcggtt tcgcaccgct gaacctgagt gccgaagaca
    15241 tcctcgccat cggcaggcag accggcgtaa tgcacttctt cgcaggtttc gtcatccccg
    15301 tcatcggctt gggcttcatc gtaccttggt ctgaaatccg caaaaacttg ggcttcgtcg
    15361 ccattgccgt cttctcctgc accattcctt atgtcgcatt ggcgatggtc aacgaagaat
    15421 tcccgtcgct cgtcgccggc gcaatcggcc tgatggtgtc cgtattcgcc gccaaccaag
    15481 gctggggctt gagcaaagac cacgccaaag acccgaatgc cgaaaaagtg ccgttcgccc
    15541 aagtcgccaa agcactcgcc cctttgggta tgctgatcgg catgctggtg gttacgcgca
    15601 tcaaacagct cggcatcaaa ggcattttga ccagcaaaga agaatggttc agcttccaac
    15661 tgccgtttga tttgtccaaa atcaccgtca gcgactccct gacgattacc ttcggcaata
    15721 ttttcggaca agatgtcagc gcgtcttacc aaacgctgta cgtcccggct tggattccgt
    15781 ttgtgctgac cgtttggatt tgcatcctgc tgtataaaac caaattcaaa gatgcctgga
    15841 cgatttattc cgtaactttc aatcaaacca aaaaaccgct gcttgccctg atgggcgcgc
    15901 tgattatggt tcagctgatg ctggtcggcg gcgacaattc gatggtgaaa atcatcggta
    15961 aggaatttgc cgcaatggcg ggcgaacact gggtttattt ctcgccgtat ctgggcgcga
    16021 tcggtgcgtt cttctccggc tccaacaccg tgtccaacct gactttcggc ccgattcagc
    16081 agcaaatcgc cttggatacc ggcctgtccg ttaccctgat tctggcgttg cagtccgtcg
    16141 gcggcgcgat gggcaatatg gtgtgcctca acaacatcat cgccgtatgt accgtattgg
    16201 atgtgaaaaa ttccgaaggt gcgattatca agaaaaccgt tatcccgatg gcgatttacg
    16261 gcgtgattgc cgtcgtcgcg gcaatgattt tcttcctcta ggcgaaacgc caccatccat
    16321 agcggcagca cgcggggaac ggaaaccgcc gttccccgtc tgggcggcgc gtcgggcaga
    16381 atcccggtgc cggaacagcc cgccccgcca aacaaatgcc gtctgaaacc ggaaaaggct
    16441 tcagacggca tttttccgcc gtttgcattc aggcgtaatg atgatgcggc atcttgccgt
    16501 caaggcggta gcgcgtgccg caatacgggc aggcaacgct gcccgattct ccttcgcaca
    16561 aaggcaaaaa cactctcgga tgcccgttcc actgctcgtt gtcgggtccc gagcaataca
    16621 gcggcagatt ttccggcaac acggaaattt cctgcagatt cagattgtcc atttgatttt
    16681 cctttgcgtg gttggcgtgc gcccatttta cgccatcggc aggctaaagg atattttcgg
    16741 cgcaaagccg caatccgcta taatccccac ttttcagacg gcataccatg actgcgctta
    16801 cccttccgga agacatccgc caacaagagc catccgccct gctctatccc ctcgtttccg
    16861 cctacctcga acacaccgcc caaaccggcg acgaatccct ctcctgcctg tccgacgacc
    16921 agcatacgct gaccgcattc tgctacctcg acagccaagt cgaagaaggc ggcttcgtgc
    16981 aactcatcgc ctccggttac ggcgaatata ttttccgcaa cccgcttgcc gacagcctgc
    17041 gccgctggaa aatcaaagcc gtgccgaaag tcttggacaa agccaaagcc ctctacgaac
    17101 aacacggcaa aaccatcgaa acgctcgccg acggaggcgc agacatcgaa tccctgcgca
    17161 aacagttccc cgactttgaa gaatgggacg gcgcatacta cgaagccgcc gaacaagacc
    17221 tgcccctgct tgcagaacac atacagtcaa actgggaaac cttcgcccat atcgggcagg
    17281 cgtgattgcg tctgtttcca gcccgtgtaa aacagcgtaa aatcggcaaa cccgaatgac
    17341 cttccgtccc catcaaggag caagctatgt tcttcaagca catcgaagcc gcccccgccg
    17401 atccgattct cggtttgggc gaagcgttca aagccgaaac ccgccccgaa aaagtcaacc
    17461 tcggcatcgg cgtttataaa gacgcatccg gcgcgacacc cctcgtcaaa gccgtcaaag
    17521 aagccgaaaa acgcctgttg gaaagcgaaa ccaccaaaaa ctacctcacc atcgacggtg
    17581 ttgccgacta caacgagcaa acccaaatcc tgctgttcgg caaagaccac gaaatcatcg
    17641 ccagccgtcg cgccaaaaca gcgcaaagcc tcggcggtac gggcgcattg cgtattgcgg
    17701 ccgagtttgc caaacgccag ttgaacgcgc aaaccatctg gatttccaat ccgacttggc
    17761 ccaaccacaa cgccatcgcc aaagcggtcg gtatccaaga caaaccttat cgttactatg
    17821 atgccgccaa acacggtttg gattgggacg gcatgattga ggacttgagc caagcgcaaa
    17881 aaggcgacat cgtcctgctg cacggctgct gccacaatcc taccggcatc gaccctacgc
    17941 ccgaacaatg ggaaactttg gcaaaacttt ctgccgaaaa aggctggttg ccgctgtttg
    18001 actttgccta ccaaggcttc ggcaatggtt tggaagaaga tgcctacggc ttgcgcgtgt
    18061 tcttgaaaca caatacagaa ttgctgattg ccagctctta ttccaaaaac ttcggtatgt
    18121 acaacgagcg cgtcggcgcg ttcactttgg tggccgaaga tgaagaaaca gcagcccgcg
    18181 cccacagcca agtcaaaacc atcatccgta ccttgtattc caacccggct tcacacggtg
    18241 cgaacaccat tgcgctggtg ttgaaaaatg atgatttgaa agcacaatgg attgccgaac
    18301 tcgatgaaat gcgcggccgc atcaaagcca tgcgccaaaa atttgtcggg ttgctcaaag
    18361 ccaaaggtgc aagccaaaac tttgatttca ttatcaaaca aaacggtatg ttctctttca
    18421 gcggcttgac tcccgaacaa gtcgaccgcc tgaaaaacga gtttgccatt tatgccgtcc
    18481 gctccggccg catcaacgtc gccggcatta ccgacaacaa catcgattat ctgtgcgaaa
    18541 gcatcgtgaa agtcttgtaa aacaaaagcg catacgaaat gccgtctgaa ccttaaccag
    18601 ttcagacggc atctgttttt tgttaaaaaa caataaacca taacaatttc aaacaagcta
    18661 aaaaacatct ataaagtcaa cccaatatga tgaactcaaa taaaaaatac gaatatcatc
    18721 attctcaaat tcaaaatttg aacgccacag tattatccga agccacaaaa acctttccgc
    18781 cgtcattccc gcgcaggcgg gaatccggga acccaatgct gcaagaattg attagaaaca
    18841 actgaaaccg agcaaactgg attcccgcct gcgcgggaat gacgaaataa ggcgagtaaa
    18901 actgatgaaa caaattgatt aaaaacaata acttatatta ttttatttaa attttcgata
    18961 aaatcaattt tccgtattca atactgctcc aatcaattcc cgcgcaccgt cgtccgccaa
    19021 tttcttagcg acagcgcgtc cgagcgcgtc ggcatattcg gcaggggctt gcgcgtccgc
    19081 ctgcaacaca accgaaccgt cggggtgtcc gaccagtccg cgcaaggtca gcaagccgtt
    19141 ttcttccgtg caatatgcgg ccagcggcac ttggcagctt ccgcccaaag cgcgcgccaa
    19201 agctcgttcg gccgtaacgc aggcgtgtgt ggtatcgtgg tttagcggtt ttaaaacctc
    19261 atacaaatct tcgcggtgcg cggcaatttc gatacccaat gcgccttgtc cggcggcagg
    19321 caggctgtcg gattccgaca aaatcatgcg gatgcgtccg tccaatttca gacgctgcaa
    19381 accggcggca gccaagataa ttgcgtcgta ttcgccgtta tcgagtttgg acaaacgggt
    19441 ttgcacattg ccgcgcaaag gtttgataag caaatgcgga tagcgcgcac gcaactgggc
    19501 ttcgcggcgc aggctggatg tgccgacaac cgcgccttcg ggcatttctt ccaaacgcgt
    19561 gtattggttg gacacaaatg cgtcaaacgg attggcgcgt tcgccgatgg ccgcaagcgc
    19621 gaaaccttca ggcaaatcca tcggtacgtc tttaatcgaa tgcaccgcca aatcggcgcg
    19681 cccgtcatat aaagcctgtt ccaactcttt gacaaacaag cctttaccgc cgacttttga
    19741 caaagttttg tccaaaatct gatcgccgcg cgtggtcatg cccaaaatct cgacttcgca
    19801 atcgggatac agagccttca gacggccttg gatatgcttt gcctgccaca tagcaagcag
    19861 gctttcgcgg ctggcgatga cgagtttttt cgggttcatg ttcaatgcgt tcaaagaatg
    19921 gaaacggcgt gaagtctatc atattttgaa cgtttcttca gacggcaccg tcaggtctat
    19981 gttatattta cacccacaaa acacgaaacc cgccacaatg aaacgcacca aaaaataccc
    20041 tttcttaacg ttgcagcggc aacgtttcca tttgaacttt gaaaacgcct cttccgccgc
    20101 tggcatccca gccgaacgcg atttctaccg ctgggcgtgg tctgccttga aaaatgaata
    20161 ccgccgcgcc gacatcagcc tgattctttt ggacgaagaa gaagcccgcg actacaaccg
    20221 cgactaccgg ggcaaagatt acgccaccaa tgtcttgagt ttcgcgctca acgaaggcga
    20281 aaccctgccc tgccaagttt cggaaaaact gtacggcgat ttgattatct gcccgcaagt
    20341 ggttttgaaa gaagccgccg aacaaggcaa aacacccgag cagcattttg cccacctgac
    20401 catacacggt actttacacc tgatgggcta cgaccacatc gaagacgacg aagccgaaat
    20461 aatggaagcc gaagaaatcc gcctgatgcg ggcggcaggc ttccccaacc cctaccaaga
    20521 ggacggacat taaaatggac ggcgcacaac cgaaaacgaa tttttttgaa cgcctgattg
    20581 cccgactcgc ccgcgaaccc gattccgccg aagacgtatt aaacctgctt cggcaggcgc
    20641 acgagcagga agtttttgat gcggatacgc ttttaagatt ggaaaaagtc ctcgattttt
    20701 ccgatttgga agtgcgcgac gcgatgatta cgcgcagccg tatgaacgtt ttaaaagaaa
    20761 acgacagcat cgaacgcatc accgcctacg ttatcgatac cgcccattcg cgcttccccg
    20821 tcatcggtga agacaaagac gaagttttgg gtattttgca cgccaaagac ctgctcaaat
    20881 atatgttcaa ccccgagcag ttccacctca aatcgatatt gcgccctgcc gtcttcgtcc
    20941 ccgaaggcaa atcgctgacc gcccttttaa aagagttccg cgaacagcgc aaccatatgg
    21001 cgatcgtcat cgacgaatac ggcggcacgt cgggtttggt aacttttgaa gacatcatcg
    21061 agcaaatcgt cggcgacatc gaagacgagt ttgacgaaga cgacagcgcg gacaacatcc
    21121 acgccgtttc ttccgaacgc tggcgcatcc acgcggctac cgaaatcgaa gacatcaaca
    21181 ccttcttcgg tacggaatac agcagcgaag aagccgacac catcggcggc ctggtcattc
    21241 aagagttagg gcatctgccc gtacgcggcg aaaaagtcat catcggcagt ctgcaattta
    21301 ccgtcgcacg cgccgacaac cgccgcctgc atacgctgat ggcgacccgc gtgaagtaag
    21361 caccgccgtt tctgcacagt ttaggatgac ggtacgggcg ttttctgttt caatccgccc
    21421 catccgccaa acataaaaat gccgtctgaa gccggaaaac aggttcagac ggcattttgc
    21481 ttatccgctt attttttgct caaagtcagc cccgtccagc cgaataacag ggtcaaagcc
    21541 aaactcaaat agcagaaaaa ggcatagggc agatattccc agaccggcac acccagcgca
    21601 tggctgataa atacgccgca cacgctccac ggaacaagcg ggttgatgac cgtccccgca
    21661 tcttcgagcg tccgagacag gttgcgcgaa tgcagaccga gcttatcgta aacgggtttg
    21721 aacgtttcac ccgacaacaa aatactcaaa tattgctcgc caatcaggaa attaaccccg
    21781 accgaagtca tagcaacgct gaatgtggca cgcccggcat tcgtcaaaaa gctgcggacg
    21841 gcatccagca gggaaggaat cgcgcccagt gcaaacaaca gcccgcccaa actcatcccg
    21901 aggataacga tagtctgcgt gaagaacata ctttccaaac cgccgcgcga aatgagtttg
    21961 gcaatgtctt taaacgcttc gccttcgagt ttgtagccgc cgtaaaacca cgcgccgagc
    22021 tgacgcagat cgggcgtact gtgcagatac gttacggcaa cggcaaccat gacggtaaag
    22081 agcatggcga ccacggcatt gacgcgcatc aatgccaaaa cgaccaacag tgcaaacgga
    22141 atcagcgaat agccgtgcac caatcccgtg gcttcaagct ggctgcggaa ggattcgacg
    22201 ctgttcaaat cctgcgcggc gacactggga agaagccaca gcatcagtgc cgcactgatg
    22261 agccacgcgg gaatggtggt gtacatcata tttttgatgt gctcaaacag gtcgatgccg
    22321 acgatggacg cggaaatgcc cgtggtgtcg gaaagcgggg acattttgtc gccgaaaaac
    22381 gcaccggaaa caatcgcgcc cgccgtcatc gccatatcgg catgaaacgc cgccgccatc
    22441 cccataaagg caacgccgac ggtggcgcag gtggtcaggc tgctgccgat ggacacgccg
    22501 atgacggaac acagcgcgaa ggcggaaaaa taaaaataag tcggggaaat cagcccgaaa
    22561 ccgtaataca tcagcgtcgg aatcgcgccg ctcatcatca gcgcgctgac catcagcccg
    22621 atgaagaaaa acaggtaaat cgcgcccata ccctgattca acgcgcctat catgccctgc
    22681 tgcatatcgt tgtatttcaa accgcgcacc aagccgtaca aaatcagcac gacgatggcg
    22741 gcaataatgg acatatgcgg cagccactcc aatgaaatga tggtatagcc catcgcggca
    22801 atcagagcga cgacgacggc aagtgcctca ccgcgcggca tatcgagtaa ggatttgaaa
    22861 gcaaacatga ttctttgccc gatttgatat aaagttaacg gattctaaca caccataccg
    22921 aatccgccca acgttttcag acggcatttt agcgttttac aaaagccggg cagaaacaaa
    22981 acggtaattt cctcgattta aattaatttt tttgaaatat aattttttat ttttttgttt
    23041 gttggcatat aagactttta tggattgaag tattaaaacc tcggcacaca cgccgcaaac
    23101 accggtacgc aaaaatgccg tctgaaagat gttcagacga catttctcaa gaaaaagatt
    23161 atttgtccgc cctatatccg tacaccgcaa aaaacacgat atacagataa cagatgacgg
    23221 aaacgacaaa cgaagacatc agggtgtaag tatctgccac ccagccctgc acgacaggaa
    23281 cgaccgcacc gccgacaatc gcggtacaca gtacaccgga agccgcgttg gtaaattttc
    23341 ccaatccttt ggttgccaaa gagaaaatcg tcgggaacat aatcgagttg aaaaaaccga
    23401 tggcaagcag cgaccacatc gccacatccg cattgccgct acccgtcgcc atcgcgacgg
    23461 caagcagtac gaccgcagcc gatgcgttaa acgccaaata acggttgggc gcgaatttcg
    23521 ccatcaccgc cgaaccgagg aaacgtccga ccatcgcgcc gccccaatag aacgacaggt
    23581 aatgcgcggc agaagcatga tccagccctt tcagataacc caatacgttg accatcaacg
    23641 aaccgataga cacctccgcg ccgacatagc agaaaatgcc tgccgtaccg aacacgagat
    23701 gtttgtattg ccatacgctg gttttgccgt cgtggttgtg cgcgctttcc tcggcggcaa
    23761 ttttgcgcgc gtcgggcagc cggatcattt tcacgaaaac ggcaaggata atcagcagcc
    23821 ccgccagtcc caaataggga atctgtacgg aagaaatctg ttccgccttg ctgacggttt
    23881 gggttgcgtc cgccagaatc aggaacgcgc cgatttgcgg cgcaatggtc gtacccaaag
    23941 cgttaaacgc ctgaaccagc gtcagtgttg ccgattcctt gccgggtttc gccagcaggg
    24001 taacataagg attaccggcg acctgaagca gcgttacgcc ggaagccaaa ataaacaacg
    24061 cgcccaaaaa taccgcgtaa gaatggctac ccgcagcagg ataaaacagc aggcatccga
    24121 ccgccgtcag cagaaagccg ccgataacgc cgtttttgta gccgactttg ccgacaaaag
    24181 cccccatcgg gatggacatc accgcatagg cggtaaagaa acagaattga atcagcatcg
    24241 cctgaacgta agacaggtcg aaaatttctt tcaaatgagg gataaggatg tcgttcatgc
    24301 aggtaataaa acccatcatg aagaacagcg tggtcaagac gaccaatggg gacgtatgat
    24361 tgttttgtga ttgcgcagac atgatttgcc tttcgtggtg tcggaatatt acccgtttca
    24421 agaaaataga aattgacatt tcttaacggc aatgcaaatc atactgatat ttgaacattt
    24481 tgcaaacttt atcggatgca ggcaatgcgc cgatctgaaa ttcaagcagc agaaattaat
    24541 attttacagt tgcttgcata gattttaata gattttaata gattttaaaa aattccggcg
    24601 gacttgcaaa aaccgttccc aataaaatga aaatccgccg ccgtatccgg aaaattcgga
    24661 aatgccgcat cgtggcatca aaaccggagc ggaaagaatg tcgtatgccc gacaaaaaag
    24721 gggcatacgg ctgtgccgta ttttttgcac cgtcctccgc ccttcggcgg gggcgtgaaa
    24781 atatagtgga ttaacaaaaa tcaggacaag gcgacg
//
LOCUS       DAWGNT010000011        24778 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.011, whole genome shotgun sequence.
ACCESSION   DAWGNT010000011 DAWGNT010000000
VERSION     DAWGNT010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 24778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24778
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.011"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            470..1114
                     /gene="rplC"
                     /locus_tag="WHR98_000284"
     CDS             470..1114
                     /gene="rplC"
                     /locus_tag="WHR98_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEZ2307022.1"
                     /translation="MTLGLVGRKVGMTRVFDEQGVSVPVTVLDMSANRVTQVKSKDTD
                     GYTAVQVTFGQKKANRVNKAEAGHFAKAGVEAGRGLIEFALTEEKLAELKAGDEITVS
                     MFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFP
                     GKRMAGQYGNTKATVQKLEVVRVDAERQLLLVKGAVPGAVNSDVVVRPSVKVGA"
     gene            1114..1734
                     /gene="rplD"
                     /locus_tag="WHR98_000285"
     CDS             1114..1734
                     /gene="rplD"
                     /locus_tag="WHR98_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEZ2307023.1"
                     /translation="MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANAR
                     SGNRAQKTRAEVKHSTKKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVN
                     RKMYRAGMATILSQLTRDERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFVTKQLDE
                     NVYLASRNLPNVLVLEAQQVDPYSLLRYKKVIITKDAVAQLEEQWV"
     gene            1731..2045
                     /gene="rplW"
                     /locus_tag="WHR98_000286"
     CDS             1731..2045
                     /gene="rplW"
                     /locus_tag="WHR98_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEZ2307024.1"
                     /translation="MNQQRLTQVILAPIVSEKSNVLAEKRNQMTFKVLANATKPEIKA
                     AVELLFGVQVASVTTVTTKGKTKRFGRTLGRRSDVKKAYVSLAAGQELDLEAAAAAAD
                     KE"
     gene            2051..2884
                     /gene="rplB"
                     /locus_tag="WHR98_000287"
     CDS             2051..2884
                     /gene="rplB"
                     /locus_tag="WHR98_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEZ2307025.1"
                     /translation="MAIVKMKPTSAGRRGMVRVVTEGLHKGAPYAPLLEKKNSTAGRN
                     SNGHITTRHKGGGHKHHYRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERR
                     YIIAPRGIQAGAVLVSGAEAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGA
                     SAVLLAKEGAYAQVRLRSGEVRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIRP
                     TVRGVVMNPVDHPHGGGEGRTGEAREPVSPWGTPAKGYRTRNNKRTDNMIVRRRYSNK
                     G"
     gene            2891..3169
                     /gene="rpsS"
                     /locus_tag="WHR98_000288"
     CDS             2891..3169
                     /gene="rpsS"
                     /locus_tag="WHR98_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEZ2307026.1"
                     /translation="MARSLKKGPYVDLHLLKKVDAARASNDKRPIKTWSRRSTILPDF
                     IGLTIAVHNGRTHVPVFISDNMVGHKLGEFSLTRTFKGHLADKKAKKK"
     gene            3178..3507
                     /gene="rplV"
                     /locus_tag="WHR98_000289"
     CDS             3178..3507
                     /gene="rplV"
                     /locus_tag="WHR98_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEZ2307027.1"
                     /translation="MRVNAQHKNARISAQKARLVADLIRGKDVAQALNILAFSPKKGA
                     ELIKKVLESAIANAEHNNGADIDELKVVTIFVDKGPSLKRFQARAKGRGNRIEKQTCH
                     INVTVGN"
     gene            3517..4209
                     /gene="rpsC"
                     /locus_tag="WHR98_000290"
     CDS             3517..4209
                     /gene="rpsC"
                     /locus_tag="WHR98_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEZ2307028.1"
                     /translation="MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLR
                     QKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPVHVN
                     IEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGA
                     DIARSEWYREGRVPLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSKPEHESK
                     QRKAGRRNAAAN"
     gene            4193..4609
                     /gene="rplP"
                     /locus_tag="WHR98_000291"
     CDS             4193..4609
                     /gene="rplP"
                     /locus_tag="WHR98_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEZ2307029.1"
                     /translation="MLQPTRLKYRKQQKGRNTGIATRGNKVSFGEFGLKAVGRGRLTA
                     RQIEAARRAMTRHIKRGGRIWIRVFPDKPITEKPIQVRMGGGKGNVEYYIAEIKPGKV
                     LYEMDGVPEELAREAFELAAAKLPIPTTFVVRQVGQ"
     gene            4609..4800
                     /gene="rpmC"
                     /locus_tag="WHR98_000292"
     CDS             4609..4800
                     /gene="rpmC"
                     /locus_tag="WHR98_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009175233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEZ2307030.1"
                     /translation="MKANELKDKSVEQLNADLLDLLKAQFGLRMQNATGQLGKPSELK
                     RVRRDIARIKTVLTEKGAK"
     gene            4800..5063
                     /gene="rpsQ"
                     /locus_tag="WHR98_000293"
     CDS             4800..5063
                     /gene="rpsQ"
                     /locus_tag="WHR98_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEZ2307031.1"
                     /translation="MSETKNVRTLQGKVVSDKMDKTVTVLVERKVKHPLYGKIIRLST
                     KIHAHDENNQYGIGDVVVISESRPLSKTKSWVVSELVEKARSI"
     gene            5285..5653
                     /gene="rplN"
                     /locus_tag="WHR98_000294"
     CDS             5285..5653
                     /gene="rplN"
                     /locus_tag="WHR98_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009124801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEZ2307032.1"
                     /translation="MIQMQTILDVADNSGARRVMCIKVLGGSKRRYASVGDIIKVAVK
                     DAAPRGRVKKGDVYNAVVVRTAKGVRRPDGALIKFDNNAAVLLNNKLEPLGTRIFGPV
                     TRELRTERFMKIVSLAPEVL"
     gene            5665..5988
                     /gene="rplX"
                     /locus_tag="WHR98_000295"
     CDS             5665..5988
                     /gene="rplX"
                     /locus_tag="WHR98_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEZ2307033.1"
                     /translation="MNKIIKGDRVVVIAGKDKGKQGQVVRVLGDKVVVEGVNVVKRHQ
                     KPNPMRGIEGGIITKEMPLDISNIAILNPETNKADRVGIKLIENEGKVKRVRFFKSNG
                     SIIGA"
     gene            5998..6537
                     /gene="rplE"
                     /locus_tag="WHR98_000296"
     CDS             5998..6537
                     /gene="rplE"
                     /locus_tag="WHR98_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEZ2307034.1"
                     /translation="MARLREFYKETVVPELVKQFGYKSVMEVPRIEKITLNMGVGEAI
                     ADKKVMEHAVSDLEKIAGQKPVVTVARKSIAGFKIRDNYPVGCKVTLRRDQMFEFLDR
                     LITIALPRVRDFRGVSGKSFDGRGNYNMGVREQIIFPEIEYDKIDALRGLNITITTTA
                     KTDEEAKALLSLFKFPFKG"
     gene            6540..6845
                     /gene="rpsN"
                     /locus_tag="WHR98_000297"
     CDS             6540..6845
                     /gene="rpsN"
                     /locus_tag="WHR98_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HEZ2307035.1"
                     /translation="MAKKALINRDLKRQALAKKYAAKRAAIKAVINDSNATEEERFEA
                     RLRFQSIPRNAAPVRQRRRCALTGRPRGTFRKFGLGRIKIREIAMRGEIPGVVKASW"
     gene            6861..7253
                     /gene="rpsH"
                     /locus_tag="WHR98_000298"
     CDS             6861..7253
                     /gene="rpsH"
                     /locus_tag="WHR98_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEZ2307036.1"
                     /translation="MSMHDPISDMLTRIRNAQRANKAAVAMPSSKLKCAIAKVLKEEG
                     YIEDFAVSSDVKSILEIQLKYYAGRPVIEQIKRVSRPGLRIYKASSEIPSVMNGLGIA
                     IVSTSKGVMTDRKARSQGVGGELLCIVA"
     gene            7267..7800
                     /gene="rplF"
                     /locus_tag="WHR98_000299"
     CDS             7267..7800
                     /gene="rplF"
                     /locus_tag="WHR98_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEZ2307037.1"
                     /translation="MSRVAKNPVTVPAGVEVKFGTEALVIKGKNGELSFPLHSDVAIE
                     FNDGKLTFVANNSSKQANAMSGTARALVSNMVKGVSEGFEKRLQLIGVGYRAQAQGKI
                     LNLSLGFSHPIVYEMPEGVSVQTPSQTEIVLTGSDKQVVGQVAAEIRAFRAPEPYKGK
                     GVRYVGEVVVMKEAKKK"
     gene            7814..8167
                     /gene="rplR"
                     /locus_tag="WHR98_000300"
     CDS             7814..8167
                     /gene="rplR"
                     /locus_tag="WHR98_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEZ2307038.1"
                     /translation="MDKHTTRLRRARKTRARIADLKMVRLCVFRSNNHIYAQVISAEG
                     DKVLAQASTLEAEVRGSLKSGSNVEAAAIVGKRIAEKAKAAGVEKVAFDRSGFQYHGR
                     VKALAEAARENGLSF"
     gene            8186..8704
                     /gene="rpsE"
                     /locus_tag="WHR98_000301"
     CDS             8186..8704
                     /gene="rpsE"
                     /locus_tag="WHR98_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEZ2307039.1"
                     /translation="MAKHEIEERGDGLIEKMVAVNRVTKVVKGGRIMAFSALTVVGDG
                     DGRIGMGKGKSKEVPVAVQKAMDQARRSMIKVPLKNGTIHHEVIGRHGATKVFMQPAK
                     EGSGVKAGGPMRLVFDAMGIHNISAKVHGSTNPYNIVRATLDGLSKLHTPADIAAKRG
                     LTVEDILGVNHG"
     gene            8697..8882
                     /gene="rpmD"
                     /locus_tag="WHR98_000302"
     CDS             8697..8882
                     /gene="rpmD"
                     /locus_tag="WHR98_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEZ2307040.1"
                     /translation="MAEQKKIRVTLVKSLIGTIESHRACARGLGLRRREHTVEVLDTP
                     ENRGMINKISYLLKVES"
     gene            8884..9318
                     /gene="rplO"
                     /locus_tag="WHR98_000303"
     CDS             8884..9318
                     /gene="rplO"
                     /locus_tag="WHR98_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEZ2307041.1"
                     /translation="MFLNTIQPAVGATHAGRRVGRGIGSGLGKTGGRGHKGQKSRSGG
                     FHKVGFEGGQMPLQRRLPKRGFKSLTASANAQLRLSELESIAVNEIDILVLKQAGLIA
                     STVSNVKVIASGEISKAVALKGIKVTKGARAAIEAVGGKIEM"
     gene            9330..10640
                     /gene="secY"
                     /locus_tag="WHR98_000304"
     CDS             9330..10640
                     /gene="secY"
                     /locus_tag="WHR98_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEZ2307042.1"
                     /translation="MANQQTSSGSSKFGDLKKRLLFLFGALIVFRIGAHIPVPGVDAV
                     ALAKLYESAGNGILGILNMFSGGSLERFSIFAIGIMPYISASIIVQLASEILPSLKAL
                     KKEGEAGRKVITKYTRYGTVLLAILQSLGVASFVFQQGIVVTSSFEFHVSTVVSLVTG
                     TMFLMWLGEQITERGIGNGISLIITAGIASGIPSGIAKLVTLTNQGSMSMLTALFIVF
                     GALLLIYLVVYFESAQRKIPIHYAKRQFNGRAGSQNTHMPFKLNMAGVIPPIFASSII
                     LFPSTLLGWFGSADTNSVLHKIAGLLQHGQLLYMALFAATVIFFCYFYTALVFSPKEM
                     AENLKKSGAFVPGIRPGEQTSRYLEKVVLRLTLFGALYITTICLIPEFLTTVLNVPFY
                     LGGTSLLILVVVTMDFSTQINSYRLTQQYDKLMTRSEMKSFSRK"
     gene            10645..10863
                     /gene="infA"
                     /locus_tag="WHR98_000305"
     CDS             10645..10863
                     /gene="infA"
                     /locus_tag="WHR98_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEZ2307043.1"
                     /translation="MAKEDTIQMQGEILETLPNATFKVKLENDHIVLGHISGKMRMHY
                     IRISPGDKVTVELTPYDLTRARIVFRAR"
     gene            10884..10997
                     /gene="rpmJ"
                     /locus_tag="WHR98_000306"
     CDS             10884..10997
                     /gene="rpmJ"
                     /locus_tag="WHR98_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEZ2307044.1"
                     /translation="MRVQPSVKKICRNCKIIRRNRVVRVICTDLRHKQRQG"
     gene            11063..11425
                     /gene="rpsM"
                     /locus_tag="WHR98_000307"
     CDS             11063..11425
                     /gene="rpsM"
                     /locus_tag="WHR98_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEZ2307045.1"
                     /translation="MARIAGVNIPNNAHIVIGLQAIYGIGATRAKLICEAANIAPDTK
                     AKDLDETQLDALRDQVAKYEVEGDLRREVTMSIKRLMDMGCYRGFRHRRGLPCRGQRT
                     RTNARTRKGPRKAIAGKK"
     gene            11445..11840
                     /gene="rpsK"
                     /locus_tag="WHR98_000308"
     CDS             11445..11840
                     /gene="rpsK"
                     /locus_tag="WHR98_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEZ2307046.1"
                     /translation="MAKANTASRVRKKVRKTVSEGIVHVHASFNNTIITITDRQGNAL
                     SWATSGGAGFKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRAL
                     NALGFKITSITDVTPLPHNGCRPPKKRRI"
     gene            11860..12480
                     /gene="rpsD"
                     /locus_tag="WHR98_000309"
     CDS             11860..12480
                     /gene="rpsD"
                     /locus_tag="WHR98_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004282443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEZ2307047.1"
                     /translation="MARYIGPKCKLARREGTDLFLKSARRSLDSKCKIDSAPGQHGAK
                     KPRLSDYGLQLREKQKIRRIYGVLERQFRRYFAEADRRKGSTGELLLQLLESRLDNVV
                     YRMGFGSTRAEARQLVSHKAIVVNGQVVNIPSFQVKAGDVVSVREKAKKQVRIQEALG
                     LATQIGLPGWVSVDADKLEGVFKNMPDRSELTGDINEQLVVEFYSK"
     gene            12506..13492
                     /gene="rpoA"
                     /locus_tag="WHR98_000310"
     CDS             12506..13492
                     /gene="rpoA"
                     /locus_tag="WHR98_000310"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEZ2307048.1"
                     /translation="MQNSTTEFLKPRQIDVNTFSATRAKVSMQPFERGFGHTLGNALR
                     RILLSSMNGFAPTEVAIAGVLHEYSTVDGIQEDVVDILLNIKGIVFKLHGRSQVQLVL
                     KKSGSGVVSAGDIELPHDVEILNPGHVICHLADNGQIEMEIKVEQGRGYQSVSGRQVV
                     RDENRQIGAIQLDASFSPISRVSFEVEPARVEQRTDLDKLVLDIETDGSIDPEEAVRS
                     AARILIDQMSIFADLQGTPVEEVEEKAPPIDPVLLRPVDDLELTVRSANCLKAEDIYY
                     IGDLIQRTETELLKTPNLGRKSLNEIKEVLASKGLTLGSKLEAWPPVGLEKP"
     gene            13516..13884
                     /gene="rplQ"
                     /locus_tag="WHR98_000311"
     CDS             13516..13884
                     /gene="rplQ"
                     /locus_tag="WHR98_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEZ2307049.1"
                     /translation="MRHRNGNRKLNRTSSHRAAMLRNMANSLLTHEAIVTTLPKAKEL
                     RRVVEPLITLGKKPSLANRRLAFDRTRDRDVVVKLFGDLGPRFTARNGGYVRVLKYGF
                     RKGDNAPLALVELVDKPAAE"
     gene            14031..14744
                     /gene="minC"
                     /locus_tag="WHR98_000312"
     CDS             14031..14744
                     /gene="minC"
                     /locus_tag="WHR98_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HEZ2307050.1"
                     /translation="MMVYIMNAFDIKSTKMDVLSISLHTSDLFDLEDVLVKLGKKFQE
                     SGVVPFVLDVQEFDYPESLDLAALVSLFSRHGMQILGLKHSNERWAAAAMKYHLLFCL
                     SHSENVKELGQVEVQNTEDGQKARKTVLITSPVRTGQQVYAEDGDLIVTGAVSQGAEL
                     IADGNMHIYAPMRGRALAGAKGDTSARIFIHSMQAELVSVAGIYRNFEQDLPDHLHKQ
                     PVQILLQDNRLVISAIGSE"
     gene            14773..15588
                     /gene="minD"
                     /locus_tag="WHR98_000313"
     CDS             14773..15588
                     /gene="minD"
                     /locus_tag="WHR98_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HEZ2307051.1"
                     /translation="MAKIIVVTSGKGGVGKTTTSASIATGLALRGYKTAVIDFDVGLR
                     NLDLIMGCERRVVYDLINVIQGEATLNQALIKDKNCENLFILPASQTRDKDALTREGV
                     EKVMQELSGKKMGFEYIICDSPAGIEQGALMALYFADEAIVTTNPEVSSVRDSDRILG
                     ILQSKSHKAEQGGSVKEHLLITRYSPERVAKGEMLSVQDICDILHIPLLGVIPESQNV
                     LQASNSGEPVIHQDSVAASEAYKDVIARLLGENREMRFLEAEKKSFFKRLFGG"
     gene            15592..15855
                     /gene="minE"
                     /locus_tag="WHR98_000314"
     CDS             15592..15855
                     /gene="minE"
                     /locus_tag="WHR98_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HEZ2307052.1"
                     /translation="MSLIEFLFGRKQKTATVARDRLQIIIAQERAQEGQAPDYLPTLR
                     KELMEVLSKYVNVSLDNIRISQEKQDGMDVLELNITLPEQKKV"
     gene            15859..16779
                     /gene="oxyR"
                     /locus_tag="WHR98_000315"
     CDS             15859..16779
                     /gene="oxyR"
                     /locus_tag="WHR98_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator OxyR"
                     /protein_id="HEZ2307053.1"
                     /translation="MTLTELRYIVAVAQERHFGRAARRCFVSQPTLSIAIKKLEEELA
                     VSLFDRSSNDIITTEAGERIVAQARKVLEEAELIRHLANEEQNELEGAFKLGLIFTVA
                     PYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPL
                     YDEPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQ
                     GLTNTLQGSSINTIRHMVASGLAISVLPATALTENDHMLFSIIPFEGTPPSRRVVLAY
                     RRNFVRPKALSAMKAAIMQSQLHGVSFIRD"
     gene            complement(16776..16967)
                     /locus_tag="WHR98_000316"
     CDS             complement(16776..16967)
                     /locus_tag="WHR98_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307054.1"
                     /translation="MLIHYTWHCIGTDENIHSDAKVEYLQDGSFRGDAILKIDDDGNI
                     LAYRVVGSGKWRFENNACA"
     gene            17353..17742
                     /locus_tag="WHR98_000317"
     CDS             17353..17742
                     /locus_tag="WHR98_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
                     /protein_id="HEZ2307055.1"
                     /translation="MRYTIKTFQTLADETFPSKNFKILSFNGVARPITIVCPTHGVQT
                     VSAGQAFIRSKHGCPACGLVLSTSVLASRGRSVSILDTATGETLSFPSVQAAAKALNT
                     SYGSIRTKLDGRSSPDNLVCNRYKVMP"
     gene            complement(18112..20949)
                     /locus_tag="WHR98_000318"
     CDS             complement(18112..20949)
                     /locus_tag="WHR98_000318"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEZ2307056.1"
                     /translation="MLDKYNPAEIESKHYQNWEEQGYFQPDMDLTKPSFSIQLPPPNV
                     TGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQLAAQNVSRH
                     DLGREKFLEKVWEWKEVSGGTITQQMRRVGCSADWTREYFTMDDVRAETVTEVFVRLF
                     EQGLIYRGKRLVNWDPVLGTAVSDLEVESVEEQGSMWHIRYPLADNPAEAVIVATTRP
                     ETLLGDVAVAVNPEDERYTHLIGKELILPLTGRTIPVIADEYVEKDFGTGCVKITPAH
                     DFNDYEVGKRHDTRLINVFDLEAKVLANAEVFNFKGEAQPGFALPEKYAGLDRFAARK
                     QMVADLQEQGLLVEIKAHTLMTPKGDRTGSVIEPMLTSQWFVAMSATPNGGEPDSEFK
                     GLSLADKAKKAVDSGAVRFIPENWVNTYNQWMNNIQDWCISRQLWWGHQIPAWYDEAG
                     NVYVARNQAEAEKQAGKTGLTREEDVLDTWFSSALVPFSTLGWPSETDELKAFLPSNV
                     LVTGYEIIFFWVARMIMMTTHFTGKVPFKDVYIHGIVRDHEGKKMSKSEGNVIDPVDL
                     IDGIDLDKLLVKRTTGLRKPETAPKVEEATKKLFPEGIPSMGADALRFTMASYASLGR
                     SVNFDFKRAEGYRNFCNKIWNATNFVLMNTENQDCGYGATATEPRGYSFPDMWIVGRL
                     NQTIEQVTQAYETYRFDLAAETLYSFVWNDYCDWYLELAKVQLQTGCASRQRATRHTL
                     LRVLEAALRLLHPIIPFITEELWQTVAPMCDAKTADSIMLARFPETDGGEIVQTAFGQ
                     MTVLQDLIGAVRNLRGEMGIQPNVKAPLFVESADDLADYLKYLPMMTRLTEARQVAAL
                     PESEDAPVAVCNGARLMLKVEIDKAAETARLSKEAEKLQKALDKLNAKLSKPGYTEKA
                     PAHLVEKDKADLAELEDKMAKVQTQLSKLKD"
     gene            complement(21046..21855)
                     /gene="zupT"
                     /locus_tag="WHR98_000319"
     CDS             complement(21046..21855)
                     /gene="zupT"
                     /locus_tag="WHR98_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HEZ2307057.1"
                     /translation="MPDFSMSNLAVAFSITLAAGLFTVLGSGLVMFSKTPNPRVLSFG
                     LAFAGGAMVYVSLTEIFSKSSEAFAEIYDKDHAFAAATMAFLAGMGGIALIDRLVPNP
                     HETLDAQDPSFQESKRRHIARVGMMAAFAITAHNFPEGLATFFATLENPAVGMPLALA
                     IAIHNIPEGISIAAPVYFATRSRKKTVWACLLSGLAEPLGAALGYLVLQPFLSPAVFG
                     SVFGVIAGVMVFLALDELLPAAKRYSDGHETVYGLTMGMAVIAVSLVLFHF"
     gene            complement(22035..23291)
                     /locus_tag="WHR98_000320"
     CDS             complement(22035..23291)
                     /locus_tag="WHR98_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HEZ2307058.1"
                     /translation="MKVLVLGAGVAGVSSAWYLAEAGHEVTVIDRAEGVAMETSFANA
                     GQLSYGYTTPWAAPGIPTKALKWLFKSHPPLLFRPDGSLYQIEWLWRMLQNCTASRYQ
                     INKERMVRMSEYSREMFRRFEAQTGMNFEGRKKGTLQVFRQTKEVEAAKQDIAVLERY
                     GVPYRRLKPEECAEFEPALARVTAKIAGGLHLPADATGDCHLFTENLYKLCQEKGVQF
                     HFNQTISRIDHNGLRIKAVETETGRFEADAVVCALGCFSRTVLAQLDLDLPIYPVKGY
                     SLTLPVTNSDGAPVSTVLDESYKVAITRFDNRIRVGGMAELSGYEIKLPEKRRETLAL
                     VVNDLFPEGGDLSQALFWSGLRPMTPDSTPLIGRTRFENLFLNTGHGTLGWTMSLGSA
                     KLTADIVSGKDTEIRSDDLSLSRYQA"
     gene            complement(23370..24761)
                     /locus_tag="WHR98_000321"
     CDS             complement(23370..24761)
                     /locus_tag="WHR98_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEZ2307059.1"
                     /translation="MQLFLDNLKAFFETVSGWVWGSVMLMLLVGTGIVLTVMLKGLQF
                     TMLGYALKQAFVPSKKYEGGEGHEGDISHFAALMTALSATIGTGNIAGVATAVVTGGP
                     GAVFWMWMTAIFGMATKYGEGVLAVKYRVNNSKGEMSGGPMYYIENGLGKNWKWMAVA
                     FALFGTFASFGIGSSVQSNSVAQAVQTSFGINPVYTGITLTVLTAIVVLGGIKGIAKA
                     ASFIVPAMAVFYVVGGISIIVINSDALMPAVNLIFSDAFSAKAVAGGAIGTVIRYGVA
                     RGVFSNEAGMGSAPIAAAAAKTDHPVRQALVSMTGTFLDTIVVCSITGIILVMGLLGA
                     GGEFVKPELSGAALTTVTFQKMLPGIGGWIVTIGLIFFAYSTILGWCYYGEKCAVYVF
                     GEKFAGLYRVGYVSSVMLGTVLSLDLVWLASDTFNGLMALPNLIALLLMAKVIVNETR
                     DFKQKITNGELPH"
BASE COUNT         6417 a         5241 c         6295 g         6825 t
ORIGIN      
        1 gcctgttgcc gcctaaaagg cggcccggat gcctgattat cgggtatccg gggaggatta
       61 agggggtatt ggggtaaaat tagtggatat ttgaaacgaa aacagccgaa aacctgtgtt
      121 ggggtttcgg ctgtcgggag ggaaaggaat tttgcaaagg tcccagcata cgaaaactac
      181 catctcaaag aaataatgga tgcagtcatc aaccatattc cggtttgtcg gagaaagatg
      241 catacgctgt gatgaccgga taccgaccct ttaaaagagt ccgaccctat gccgtctgaa
      301 aattcaaaac gcttcagacg gcatattgaa gatatttctg atatttctgt tgatatttct
      361 ttgacttgtc agatataatg ccgagcttgg tacatttgtg ccaagtttaa ctttgtctga
      421 aagacaggcc aatcgtagcc tgtcccttta ctttaaaagg aaaataatca tgactttagg
      481 tctggttgga cgcaaagttg gtatgacccg cgtgttcgac gaacagggtg tttctgttcc
      541 ggtaaccgtt ttggatatgt ctgccaaccg cgttacacaa gtaaaatcca aagatactga
      601 cggctatact gccgttcaag ttacctttgg tcagaaaaaa gccaatcgtg tcaacaaagc
      661 cgaagccggg cactttgcaa aagcaggtgt tgaagccggt cgcggtttga ttgagtttgc
      721 tttgactgaa gaaaaactgg ctgaattgaa agctggtgac gaaatcaccg tttctatgtt
      781 tgaagtcggt caactggtcg atgtaaccgg tacctctaaa ggtaaaggtt tctccggcac
      841 gattaaacgt cataacttcg gtgcccaacg tacttcccac ggtaactccc gttctcaccg
      901 tgttccaggc tctatcggta tggcgcaaga cccgggtcgc gtgttccccg gtaaacgcat
      961 ggccggccaa tacggcaaca ccaaagcaac tgttcaaaaa ttggaagttg tccgtgttga
     1021 tgcagaacgc caactgctgt tggttaaggg tgctgttcca ggtgcggtca acagcgatgt
     1081 tgtagttcgt cccagcgtga aagtaggtgc gtaatggaat tgaaagtaat tgacgctaaa
     1141 ggacaagttt caggcagtct gtctgtttct gatgctttgt tcgcccgcga atacaatgaa
     1201 gcgttggttc atcagctggt aaatgcctac ttggcaaacg cccgctctgg taaccgtgct
     1261 caaaaaaccc gtgccgaagt aaaacactca accaaaaaac catggcgtca aaaaggtact
     1321 ggtcgtgccc gttctggtat gacttcatct ccgctgtggc gtaaaggtgg tcgcgcgttc
     1381 ccgaacaaac ccgacgaaaa cttcactcaa aaagtaaacc gcaaaatgta ccgtgccggt
     1441 atggcgacta ttctgtccca attgactcgt gacgagcgtt tgtttgcgat tgaggcgttg
     1501 actgccgaaa ctcctaaaac caaagttttt gctgaacaag tgaaaaatct gggtctggag
     1561 caagtgttgt ttgtaaccaa acagctcgac gagaatgttt acttggcttc acgcaacttg
     1621 ccaaacgtgt tggttttgga agctcaacaa gttgatcctt acagcttgct gcgttacaaa
     1681 aaagtaatca tcactaaaga tgcagttgca caattagagg agcaatgggt atgaatcaac
     1741 aacgtttgac tcaagtgatt ttggcaccta tcgtttctga aaaaagcaac gtattggctg
     1801 aaaaacgcaa ccaaatgacg tttaaggttt tggcaaatgc aaccaaacct gaaatcaaag
     1861 cggctgttga gctgctgttt ggtgttcaag ttgcttctgt aactaccgtt acaactaaag
     1921 gcaaaactaa gcgttttggt cgtactttgg gccgccgcag cgatgttaaa aaagcttatg
     1981 taagcttggc tgccggtcaa gagttggatt tggaagccgc tgctgcagct gcagataagg
     2041 aataaacaaa atggcaatcg ttaaaatgaa gccgacctct gcaggccgtc gcggcatggt
     2101 tcgcgtggta acagaaggtt tgcacaaagg tgcgccttat gcacctttgc tcgaaaagaa
     2161 aaattctact gccggtcgta acagtaatgg tcatatcacc acccgtcaca aaggcggcgg
     2221 tcataaacac cattaccgtg ttgtagactt taaacgtaac aaagacggca ttcctgctaa
     2281 agtagagcgt atcgaatacg atcctaaccg tactgccttc atcgcactgt tgtgctatgc
     2341 agacggcgag cgtcgttaca tcattgctcc tcgcggtatt caagccggtg ccgtattggt
     2401 ttccggtgct gaagctgcca tcaaagtagg caacaccctg ccgatccgca acattcccgt
     2461 tggtacgact atccactgta tcgaaatgaa acccggtaaa ggtgctcaaa tcgcacgttc
     2521 tgccggtgct tctgcggtat tgctggctaa agaaggcgcg tacgctcaag tccgtctgcg
     2581 ctctggcgaa gtccgtaaaa tcaacgtaaa ttgccgtgcg accatcggtg aagttggtaa
     2641 cgaagagcaa agcctgaaaa aaatcggtaa agccggtgcc aaccgttggc gcggtattcg
     2701 tccgaccgta cgcggtgttg tcatgaatcc tgtcgatcac ccgcatggtg gtggtgaagg
     2761 ccgtacgggc gaggcccgcg aaccggtcag cccatggggt actcctgcta aaggctaccg
     2821 cactcgtaat aacaaacgca cggataacat gattgttcgt cgccgttact caaataaagg
     2881 ttaatttagt atggctcgtt cattgaaaaa aggcccatat gtagacctgc atttgctgaa
     2941 aaaagtagat gctgctcgcg caagcaacga caaacgcccg attaaaacct ggtctcgtcg
     3001 ttctaccatt ctgcctgatt ttatcggtct gaccattgct gtgcacaacg gccgcaccca
     3061 tgtgcctgtg tttatcagcg acaatatggt tggtcataaa ttaggcgaat tctcattgac
     3121 ccgtaccttt aaaggccact tggccgataa aaaggctaaa aagaaataag gtgaatcatg
     3181 agagtaaatg cacaacataa aaatgcccgt atctctgctc aaaaggctcg tttggtagct
     3241 gatttgattc gtggtaaaga cgttgcccaa gctttgaata ttttggcttt cagtcctaaa
     3301 aaaggtgccg agctgattaa aaaagtattg gagtcagcta ttgctaatgc cgagcacaat
     3361 aacggtgcgg acattgatga actgaaagtg gtaactatct ttgttgacaa aggcccaagc
     3421 ttgaaacgtt ttcaagctcg cgccaaaggt cgcggtaacc gcatcgaaaa acaaacttgt
     3481 catatcaatg tgacagtggg taactaagga aaagctatgg gacaaaagat taaccctaca
     3541 ggctttcgcc tggcggtaac taaagactgg gcttcaaaat ggtttgctaa aagcaccgac
     3601 ttttctactg ttttgaagca ggatatcgat gttcgcaatt atttgcgtca aaaattggcc
     3661 aatgcttcgg ttggtcgagt ggttattgaa cgccctgcaa aatctgcacg cattaccatt
     3721 cactccgctc gtccgggtgt ggttataggt aaaaaaggtg aggatatcga ggttttgaaa
     3781 cgtgacttgc aagtcttgat gggtgtacct gttcatgtaa atattgaaga gattcgccgt
     3841 cctgagttgg atgctcaaat tattgctgac ggtattgccc agcagttgga aaagcgcgtt
     3901 caattccgtc gtgctatgaa acgagcaatg caaaatgcaa tgcgttctgg tgctaaaggc
     3961 attaagatta tgacttcagg ccgtctgaat ggtgcggata ttgcccgtag cgaatggtat
     4021 cgtgaaggtc gcgtgccact gcatacttta cgtgcaaatg tagattatgc aaccagcgaa
     4081 gcgcacacca catatggtgt attgggtctg aaagtttggg tttatacgga aggcaatatt
     4141 aaatcttcca aacctgaaca tgagagtaaa caaagaaagg caggtagacg taatgctgca
     4201 gccaactaga ctgaaatacc gtaagcaaca aaagggtcgc aatactggca tcgctactcg
     4261 cggtaataag gtaagtttcg gtgagttcgg cttgaaagcc gtaggtcgtg gtcgtttgac
     4321 tgcccgtcaa atcgaagctg ctcgtcgtgc aatgacccgt catatcaaac gtggtggtcg
     4381 tatttggatt cgtgtattcc ctgataaacc gattactgaa aagcctattc aagttcgtat
     4441 gggtggcggt aaaggtaacg tggaatatta cattgccgaa attaaaccag gtaaagtgtt
     4501 gtatgaaatg gatggcgttc cagaggaact ggctcgtgaa gcattcgagt tggctgctgc
     4561 caaattgcct attcctacaa cctttgtagt aagacaggtg ggtcaataat gaaagcaaat
     4621 gaattgaaag acaaatccgt tgagcagttg aatgcagatt tgttggactt gttgaaagct
     4681 cagtttggct tacgtatgca aaacgctacc ggtcaattag gcaaaccaag tgaattgaaa
     4741 cgtgtacgtc gcgatattgc tcgtattaaa accgttttaa ctgaaaaagg tgctaagtaa
     4801 tgagcgaaac taaaaatgtt cgtactttgc aaggcaaagt agtaagcgac aaaatggata
     4861 aaaccgtaac agtattggtt gagcgtaaag taaaacatcc gctgtatggt aagattattc
     4921 ggttatctac taaaatccat gcccatgatg aaaataatca atatggaatt ggtgatgtgg
     4981 ttgttatatc ggaatcccgt ccattgtcaa aaactaaatc ttgggttgtc agtgagctgg
     5041 ttgagaaagc acgttctatt taagaattaa agcaacgtgc ttggaatggg aaacgaagta
     5101 ttgcagcaaa tttaatttgc gtgtaaactt cgtttcctgt ctttcagttt cttctggaag
     5161 tttcttccct ttcggggtcc aagactggtt tacttgaacc gcaaggtttc atttaataag
     5221 cagcggcttt gctgtaagtt atctgaaagt ggtaaattaa gttggttaat ttaaaggtaa
     5281 taacatgatt caaatgcaga ccatcttaga tgtggctgat aactctggtg cgcgtcgcgt
     5341 aatgtgtatc aaggtattgg gcggatctaa gcgtcgctac gcttctgttg gcgatattat
     5401 taaagtggca gttaaagatg cggctccgcg tggccgtgtc aaaaaaggcg atgtatataa
     5461 tgcggtagtt gttcgtactg ctaagggtgt acgtcgtcct gatggtgcgt taattaaatt
     5521 cgataacaat gccgccgtgt tactgaataa taaacttgaa cctttgggta ctcgtatctt
     5581 tggtccggta acccgtgaat tgcgtactga gcgatttatg aaaatcgttt cattggcacc
     5641 tgaagtatta taaggaatgg cacgatgaat aaaatcatta aaggcgatag ggttgtagta
     5701 attgctggta aggataaagg taagcagggt caagtagttc gagtgttggg tgataaagtt
     5761 gttgttgagg gcgttaatgt tgtaaaacgc catcaaaaac ctaatccaat gcgtggcatt
     5821 gagggcggta ttattactaa agaaatgcct ttggatattt ctaatatcgc aatcctgaat
     5881 ccggaaacta ataaagcgga ccgtgttggt attaagctga ttgaaaatga aggcaaagtt
     5941 aaacgcgttc gtttcttcaa atcaaatggc tctatcattg gggcataagg agataacatg
     6001 gctcggttga gagagtttta taaagagaca gttgttcctg aattggttaa acaatttggt
     6061 tacaaatcag taatggaagt cccgcgtatt gaaaaaatca ccttgaatat gggtgtgggt
     6121 gaggctattg ctgataaaaa agttatggaa catgctgttt ccgatttaga gaaaattgcc
     6181 ggtcaaaaac cggttgttac tgttgcccgt aaatctatcg caggttttaa aatccgtgat
     6241 aactatccgg ttggttgcaa agtaacattg cgtcgtgatc aaatgtttga attcttggat
     6301 cgtttgatta ctattgcatt acctcgcgta cgtgacttcc gtggtgtgag cggtaaatca
     6361 tttgatggcc gtggcaatta caatatgggt gttcgtgagc aaattatttt tccggaaatt
     6421 gaatacgata aaattgatgc tttgcgtggt ttgaatatta ctattactac tacagcaaaa
     6481 accgatgagg aagcgaaagc tttattgtca ttgtttaaat ttccgttcaa aggataatca
     6541 tggctaagaa agcacttatt aatcgtgatc tgaaacgtca agctttggct aaaaaatatg
     6601 cggctaaacg cgcggcaatt aaagcggtaa tcaatgattc gaatgcaact gaggaagagc
     6661 gttttgaggc tcgtttgagg tttcaatcca ttcctcgtaa tgcggcacct gtgcgtcaac
     6721 gtcgtcgttg tgctttgaca ggtcgccctc gtggtacttt ccgtaaattt ggtttgggtc
     6781 gtattaaaat ccgtgaaatc gccatgcgtg gcgaaattcc gggtgttgtt aaagccagct
     6841 ggtaatagga gtaattaaga atgagtatgc atgatcctat ttccgatatg ttgactcgta
     6901 tccgcaatgc gcaacgtgct aataaagcag cggttgcaat gccttcttca aaattaaagt
     6961 gtgctattgc aaaggtattg aaagaagaag gatatattga ggacttcgca gtttcatctg
     7021 acgtaaagtc tatattggaa attcaattaa aatactatgc aggtcgtcct gtaattgaac
     7081 aaatcaagcg tgtatctcgc cctggtttgc gtatttataa agcgtctagt gagattccaa
     7141 gtgttatgaa tggcttgggt attgctattg ttagtacttc taaaggtgta atgactgatc
     7201 gtaaagcacg ttctcaaggt gttggtggtg agttgttatg cattgtagcc tagtggagga
     7261 aaagaaatgt cacgtgtcgc aaaaaaccca gtgactgttc ccgctggtgt agaagtaaaa
     7321 tttggaacag aggcattagt tattaagggt aagaacggtg aattgtcttt tcctttgcat
     7381 tctgatgtag ccattgaatt taatgatggc aaattgactt ttgttgcgaa taacagcagt
     7441 aaacaagcaa atgcaatgtc tggtactgct cgcgcattag tcagcaatat ggttaaaggt
     7501 gtttcagaag gttttgagaa aagattgcaa ttgataggtg tgggttatcg tgctcaagca
     7561 caaggtaaaa tcttgaatct gtctttgggt ttttctcatc cgatcgtata tgaaatgcct
     7621 gaaggtgtct ccgttcaaac tcctagccaa acagagattg ttttaaccgg ctcggataaa
     7681 caagttgttg gtcaagttgc tgctgagatt cgtgcgttcc gtgctcctga gccttataaa
     7741 ggtaaaggtg ttcgctatgt aggcgaagta gtggtaatga aagaagccaa gaaaaaataa
     7801 ttgaggttca ctaatggata aacatacaac ccgactccgt cgtgcacgca aaacccgtgc
     7861 tcgtattgcg gacttgaaaa tggtaagatt atgtgtgttc cgaagcaata atcatattta
     7921 tgctcaagta attagtgctg aaggtgataa agtattggct caagcctcta cattggaagc
     7981 tgaggtgcgc ggtagtctga aatctggaag caatgttgaa gcagctgcaa tagttggtaa
     8041 acgtatcgct gagaaggcta aagcagcagg tgtagaaaag gttgcttttg atcgttcagg
     8101 tttccaatat cacggtcgtg tgaaggcttt ggctgaagct gctcgtgaaa atggtttaag
     8161 cttctaaata tttggagact ttcagatggc aaaacatgaa attgaagaac gcggtgacgg
     8221 tctgattgaa aagatggtcg cagttaaccg tgtaaccaaa gtagttaaag gtggtcgcat
     8281 tatggctttc tctgcgctaa ctgttgttgg tgatggagat ggtcgtattg gtatgggtaa
     8341 aggtaagtca aaagaagtgc ctgttgcagt ccaaaaggcg atggatcaag cacgacgctc
     8401 tatgattaag gtaccattaa aaaatggtac gattcatcat gaggttattg gtcgacatgg
     8461 tgctactaaa gtatttatgc agcctgctaa agagggtagt ggcgtaaaag ccggtggacc
     8521 tatgcgtttg gtttttgatg ctatgggcat tcataatatc tccgccaaag tgcacggatc
     8581 tactaaccca tataatatcg tacgtgcaac attagatggt ttgtctaagt tgcatactcc
     8641 tgctgatatc gcagccaaac gtggcttgac agtggaagac attttgggag ttaaccatgg
     8701 ctgaacaaaa aaagattagg gttacattgg ttaaaagcct gattggtaca attgaatctc
     8761 atcgtgcatg tgcacgcggt ttaggtttgc gtcgtcgcga gcatacggta gaggttttag
     8821 atacccctga aaaccgtggt atgattaata aaatcagcta cttgttgaaa gtggagtctt
     8881 gatatgtttt tgaatacaat tcaacctgct gttggtgcta cgcatgctgg tcgtcgtgtt
     8941 ggacgcggta ttggtagtgg tcttggcaaa acgggtggtc gtggtcataa aggtcaaaaa
     9001 agccggtctg gtgggtttca taaggtgggt ttcgagggtg gtcaaatgcc cttgcaacga
     9061 cgcctcccta aaagaggttt taaatcttta acagcatcag ctaatgcaca gcttcgttta
     9121 agtgaactgg aatcaattgc tgttaatgag attgatattt tggtcttaaa gcaagcgggt
     9181 ctgattgcat ctacagtctc taatgttaaa gttattgctt ctggtgaaat ttctaaggca
     9241 gttgctttga agggtattaa agttaccaaa ggtgcgagag ctgctatcga ggctgttggt
     9301 ggtaagattg aaatgtaagg tttaatattg tggctaatca acaaacgtca tcaggttcat
     9361 ccaaatttgg agatcttaag aaacgtcttt tgtttctatt tggagcattg attgtttttc
     9421 gaattggtgc ccatataccc gtacctggag ttgatgctgt tgctttagct aaattatacg
     9481 aaagcgctgg aaacggcatc ctgggaatat tgaatatgtt ttccggtggg tcgttagagc
     9541 gctttagtat atttgcaata ggaattatgc catatatttc agcttctatt attgtacagc
     9601 tcgcttctga aattttgcca tcattgaagg ctttaaaaaa agaaggggag gctggtagaa
     9661 aggtaattac gaaatatact aggtatggta ctgttttgtt agcaattctt caaagtctag
     9721 gtgttgcatc tttcgtattt cagcaaggaa ttgttgtaac aagttcattt gagtttcatg
     9781 tttccacggt agtttctttg gtaacgggaa ccatgtttct tatgtggctt ggggagcaaa
     9841 ttactgaaag gggtatcggg aacggtattt ctttaatcat tacggcaggt attgcttcag
     9901 gtattccttc gggtattgca aagctggtta cactgacgaa ccaaggttct atgagcatgc
     9961 ttacggcgtt gtttattgta tttggtgcct tattattaat ttatttggtt gtatactttg
    10021 aaagtgcaca gcggaagatt cctattcatt atgcaaaacg ccagtttaat ggtagggcgg
    10081 gtagtcaaaa tacgcatatg cctttcaagt tgaatatggc tggtgttatt cccccaattt
    10141 ttgcttccag tattattcta tttccatcta ctcttttagg ttggtttggt tcggctgata
    10201 caaatagtgt tttgcacaaa atagctggat tgttacaaca cggtcaattg ctgtatatgg
    10261 ctttatttgc agcgacagtt attttctttt gttattttta tacggctttg gtttttagcc
    10321 ctaaagaaat ggcagagaat ttaaaaaaga gtggtgcttt tgttcctggg attagacctg
    10381 gtgagcagac ctctaggtat ttagaaaaag ttgtattacg tttgacattg tttggagctc
    10441 tttatattac aactatttgt ttaattccag agttcttaac tacggtttta aatgtacctt
    10501 tttatttggg tggcacgtct ttgttgattc tagttgttgt aacgatggat tttagtacac
    10561 aaataaattc gtataggctt actcaacagt atgataagtt aatgactcgt tcagaaatga
    10621 aatcattttc tcggaaatag aattatggcg aaagaagata ctatccaaat gcaaggtgaa
    10681 attcttgaaa ctttacctaa tgcaacattt aaagtaaaac ttgagaatga ccatattgta
    10741 ttgggtcata tttctgggaa gatgcggatg cattacattc gtatttctcc gggagataag
    10801 gtcacagtag agctgacacc ttatgatcta actagggctc gaatcgtttt cagagcaaga
    10861 taaaccaata aaaggaaaat aaaatgcgtg tacaaccatc tgttaagaaa atttgccgaa
    10921 attgcaagat tattcgtcga aatcgtgtag ttcgtgtaat ttgtactgat ctccgtcaca
    10981 aacagcgtca aggttaatgg aatatttctt ttaatgtgat tctgtgatat agtgacacac
    11041 tttgccctaa aaaggaaaaa atatggctcg tattgcaggg gtaaatatcc ctaataacgc
    11101 acacatcgta attggtcttc aggctattta cggtattggt gctactcgtg ctaaattgat
    11161 ttgtgaggct gcaaatattg cgcctgatac taaagcaaaa gatttggacg agactcaatt
    11221 agatgctttg cgtgaccaag ttgccaagta tgaagtagaa ggtgatttgc gtcgtgaggt
    11281 aactatgagt atcaagcgat tgatggacat gggctgctat cgtggcttcc gtcatcgtcg
    11341 cggcttacca tgccgcggtc aacgcactcg tacaaatgcg cgtacccgca aaggtccgcg
    11401 taaagcgatt gctggtaaga aataaatttt aaggaatttt attaatggct aaagcaaaca
    11461 cagcttcacg tgtacgtaaa aaagtacgta aaaccgtgag tgagggtatt gtgcacgttc
    11521 atgcatcttt caacaatacc atcattacaa tcactgaccg tcaaggcaat gcgttgtctt
    11581 gggctacctc tggcggcgct ggttttaaag gttctcgtaa aagtacacca tttgcagcac
    11641 aagttgcagc agaagcagct ggtaaagttg cccaagagta tggcgttaaa aatttagagg
    11701 ttcgtattaa aggtccaggt ccaggtcgtg aatcctctgt acgtgctttg aatgctcttg
    11761 gtttcaagat taccagcatt actgacgtta ccccgttgcc tcataacggt tgccgtccgc
    11821 ctaaaaaacg tcgtatttaa tattggagtg atttgaaaca tggcacgtta tattggccct
    11881 aaatgtaagt tggcacgtcg cgaaggtacg gatttgtttt tgaagagtgc gcgccgctct
    11941 ttggattcta aatgtaaaat tgattccgct cccggtcagc atggtgcaaa aaaaccgcgt
    12001 ttgtcagact atggtttgca gttgcgtgaa aaacaaaaaa tccgccgtat ttatggcgta
    12061 ttagaacgtc agttccgtcg ttatttcgca gaagctgatc gtcgtaaagg ttctaccggc
    12121 gagttgctgt tgcagttgct ggaatctcgt ttggataatg tcgtttatcg tatgggtttc
    12181 ggttctaccc gagctgaagc aagacagctt gtttctcata aggcgatagt tgtgaatgga
    12241 caagttgtca atattccttc tttccaagtg aaagctggtg atgttgtctc agttcgtgaa
    12301 aaagccaaaa aacaggtacg tattcaagaa gcattgggtt tggcaactca aatcggcttg
    12361 ccgggttggg tttctgtaga tgcggataaa cttgagggtg tgttcaaaaa catgccggat
    12421 cgctcggaat tgaccggtga tattaatgaa cagctggtgg tagagttcta ctctaaataa
    12481 tgctagctca gtgagggaca gttaaatgca gaatagcaca accgaatttt tgaaacctcg
    12541 tcaaattgat gtaaatactt tttctgcaac tcgtgcaaaa gtatctatgc agccatttga
    12601 acgtggtttc ggtcatacct taggtaatgc tttgcgccgt atcttactgt catccatgaa
    12661 tggttttgct cctactgaag tagctattgc cggtgtatta cacgaatatt ctactgttga
    12721 tggtattcag gaagatgttg ttgacatttt gctgaatatt aaaggtattg tgtttaaact
    12781 ccatggtcgt agccaagttc aacttgtgtt gaagaaatca ggttcaggtg tcgtatctgc
    12841 cggtgatatt gagttgccgc atgatgtaga aattctgaat cctggtcatg tcatttgtca
    12901 tttggctgat aacggtcaaa ttgagatgga aattaaagta gagcaaggtc gtggttatca
    12961 atctgtttca ggtcgtcagg tagttcgtga tgagaaccgt cagattggtg caatccagtt
    13021 ggatgcgagc ttttcgccca tcagccgtgt tagctttgag gttgaacctg cacgtgtaga
    13081 gcagcggacg gatcttgata agttggtttt ggatatcgaa accgacggtt ctattgatcc
    13141 tgaggaagct gtacgcagtg cggcacgtat tttgattgat cagatgtcta tttttgctga
    13201 tttgcagggt actcctgtgg aggaggttga agaaaaagca cctcctatcg accctgttct
    13261 tttgcgtccg gtggatgatc tggaattgac agtacgttca gctaattgtt tgaaagctga
    13321 ggatatttat tatattggcg atttgattca acgcactgaa accgagcttc ttaaaacgcc
    13381 gaatttggga cgtaaatctt tgaatgagat taaggaagta ttggcatcta aaggtttgac
    13441 actgggttct aagttggaag catggccacc tgtaggcttg gaaaagcctt aatgaagaat
    13501 taaaggataa ttgatatgcg tcatcgtaat ggcaatcgca aattaaaccg taccagcagt
    13561 catcgtgctg caatgctgcg taatatggcg aattcattat tgactcacga agctattgta
    13621 acaactctgc ctaaggccaa ggaattgcgc cgtgtagtag agccgttgat tacattgggt
    13681 aaaaagccgt cattggcaaa ccgccgtttg gcatttgacc gtactcgcga ccgtgatgtt
    13741 gtagtaaaac tgtttggcga tttgggtcct cgttttactg ctcgtaacgg tggttatgtt
    13801 cgggtgttga aatacggatt ccgtaaaggt gataatgcac ctctggcact ggttgaattg
    13861 gttgacaaac cggctgctga gtaattttag tcatataacg ccatctgccg aaaagcaggt
    13921 ggcgttattt ttgcaatatc tgataggtaa tagggtattg gctatcatgt ttaaaatatt
    13981 aattgaatag ctaaggtttg cgcggtaaac ttacatcatt aaaaaattct atgatggttt
    14041 atataatgaa tgctttcgat ataaagtcga caaagatgga cgtattgtct atatctttgc
    14101 atacgtcaga cttgtttgat ttggaagatg tgctggtcaa attgggcaag aagtttcaag
    14161 agtctggtgt tgttccattt gtgctggatg ttcaagagtt tgattatccc gagtctttgg
    14221 atcttgctgc attggtttcg ttgttttcaa ggcatggtat gcaaattttg ggtctgaagc
    14281 attctaatga acgttgggct gctgcggcta tgaagtatca tttgctgttt tgtctgtctc
    14341 attcggaaaa tgttaaagaa ctgggtcagg ttgaggtgca gaacacggag gatggtcaga
    14401 aagcaaggaa aacagtattg attacatccc ctgtccgtac cggtcagcag gtttatgccg
    14461 aagatggcga tttgattgtt acgggggcgg tcagccaggg ggcggaattg attgcagatg
    14521 gcaatatgca tatttatgcg ccgatgagag ggcgtgcttt ggccggtgcc aaaggcgata
    14581 cttctgcccg catatttatc cactccatgc aggcagaact ggtttctgtg gcgggtattt
    14641 accgtaattt tgaacaggat ttgccggacc atctgcacaa gcagccggta cagatattgt
    14701 tgcaggataa ccgattggtt atcagtgcaa ttggctcaga ataattgttt gatattttaa
    14761 aaaggaaata ttgtggcaaa aattattgta gtaacttcag gtaagggcgg tgtcggtaaa
    14821 acgactacca gtgccagtat tgcgacaggt ttggcattac gcggatataa aactgcggta
    14881 attgattttg atgtgggttt gcgtaacctc gacctcatta tgggttgcga gcgtcgtgtc
    14941 gtttatgacc tgatcaatgt cattcagggg gaggcgacgc tcaaccaagc tttgattaaa
    15001 gataaaaatt gtgaaaacct gtttattttg ccggcttccc agactcggga taaagacgct
    15061 ttgacacgcg agggcgtaga aaaagtgatg caggagctgt ccggcaagaa aatgggcttt
    15121 gagtatatta tttgcgactc tcctgccggt attgagcagg gtgcattgat ggcgttgtat
    15181 tttgctgatg aagccattgt aacgaccaat cctgaggttt ccagtgtgcg tgactccgac
    15241 aggattttgg gaattttgca aagcaaatcc cataaggcag agcaaggcgg ttcggttaaa
    15301 gaacatctgt tgattacgcg ttattctccc gaacgtgtgg caaaaggcga aatgctgtct
    15361 gtacaggata tttgcgatat tctgcatatc cctttgctgg gtgtgattcc tgaatcccaa
    15421 aacgtcttgc aggcatccaa ttccggagaa ccggtcatcc atcaggacag cgtggcggct
    15481 tccgaggcat ataaggacgt tattgcccgt cttttgggcg agaaccgtga aatgcgtttc
    15541 ttggaagctg agaaaaaaag cttcttcaaa cgtctgtttg gaggataagg tatgtcatta
    15601 atcgaatttt tattcggcag aaagcagaaa acggcaaccg ttgcccgcga ccgccttcaa
    15661 atcatcattg cccaagagcg cgcccaagaa ggtcaggctc cggattacct gccgacttta
    15721 cgtaaagagt tgatggaagt cctgtccaaa tatgtgaatg tttcattaga caatatccgt
    15781 atttcccagg aaaaacagga tggtatggat gtgcttgagt tgaacattac tttgccggaa
    15841 cagaaaaagg tataggacat gaccttaacc gaattgcggt acatcgtcgc agtcgcccaa
    15901 gaacgtcatt tcggcagggc ggcgcggcgt tgttttgtca gccagcccac tttgtctatt
    15961 gccattaaga aattggaaga agagcttgcc gtctctttgt ttgaccggag cagcaacgat
    16021 attattacga ccgaggcggg ggaacgtatc gttgcacagg cgcgtaaggt gttggaagag
    16081 gcagagctta tcaggcattt ggcaaatgaa gaacaaaacg agctggaggg tgcgttcaaa
    16141 ctcgggctga tttttacggt tgcgccgtac ctgctgccga aactgattgt ctcgttgcgc
    16201 cgtactgcac cgaaaatgcc tttgatgttg gaagagaatt acacgcatac tttgaccgag
    16261 tcgctcaaac gcggggacgt tgatgcgatt atcgttgccg aaccgtttca agagccgggc
    16321 attgttaccg aacccttgta tgacgaaccg tttttcgtga ttgtcccgaa agggcattca
    16381 tttgaggaac tggatgccgt ttcgccccgg atgctgggtg aggagcaggt tttgctgctg
    16441 acggaaggca actgtatgcg ggatcaggta ctctcaagct gttccgaatt ggcggcgaaa
    16501 caacgtatac aggggttgac caatacattg cagggcagct cgattaatac aatccgccat
    16561 atggttgcca gcggtttggc aatcagcgtg ttaccggcaa ccgcgctgac cgaaaacgat
    16621 catatgctgt tcagcattat tccgtttgaa ggtacgccgc caagccggcg ggtcgtattg
    16681 gcgtaccgcc gcaattttgt ccgtccgaag gcgttgtcgg cgatgaaggc ggcgattatg
    16741 cagtcgcagc ttcacggggt aagttttatc cgcgactagg cgcaggcatt gttttcaaaa
    16801 cgccatttcc ctgagccgac aacacggtat gccaagatat tgccgtcatc atcgattttg
    16861 agtatagcat cgccacggaa actgccgtcc tgaagatatt cgacttttgc atcactgtga
    16921 atgttttcat cagtgccgat gcaatgccat gtatagtgga ttaacaaaaa ccagtacggc
    16981 gttgcctcac cttgccgtac tattgccaag gcgtaccagc ctgatttgtt gatgtgtgta
    17041 ctactgcatg ggttgttaag ccctgcaagt gatttaagtg tgaagattga gtaatgccca
    17101 ctagtcgcag gcgcgggggg caggtgctaa gtcattggtt atctccttac tatctatcta
    17161 actacagggt gtattatgcg cctccttgtt gttttgtgca agtggttttc tgataattta
    17221 tgtaaagatt tggtaaagac gtatagcctt tttctttgca ttgtgcttgc gcagggtatc
    17281 aggtaggtct caaaaaattt gaaaattttt atgttttcgt ataaaatctt ttgcacttat
    17341 acggagtgag ttatgcggta caccattaaa acatttcaaa cccttgctga tgaaactttc
    17401 ccctctaaga acttcaaaat tctttcgttc aatggggtgg cacgacctat aaccattgtt
    17461 tgccctacac acggggtgca gactgtttct gcggggcaag catttatccg ttccaaacac
    17521 ggctgtcctg cctgtggttt agttttatca acctccgttt tggcctctag gggtcggtca
    17581 gtctccatcc tcgacaccgc cacaggcgaa acactctcgt tccccagcgt acaagctgcc
    17641 gccaaagccc taaacacctc ctacggctct atacgaacca agctcgacgg acgttcgtcc
    17701 cccgacaacc ttgtctgtaa caggtacaaa gtaatgccgt aatctcgaaa cttcgtgcta
    17761 taataaactc ctagcttttg caggagtttg ttttttatgg atttaaatgt cgaaatcaag
    17821 aattttggca aggttgccca tgctagggtt tccattcgcc cgcttaccgt catcacgggt
    17881 tgcaacccac actcgcgttc cccagcgtta ctgccgcagg cactgctttg ggtgtgcatt
    17941 ttcagcaaat taaccacagg ctcaagggtc gaacgtcctg tcaggaggtg ttgatttcta
    18001 caccgattat actgtctgcg gcttcgtcgc cttgtcctga tttttgttaa tccactataa
    18061 aagaggccgt ctgaaaaaca tttttcagac ggccttgttg attcaatcaa atcagtcttt
    18121 caacttcgac aactgagttt gcacttttgc cattttgtct tccaattccg ccaaatcggc
    18181 tttgtctttt tccaccaaat gcgccggggc tttttcggtg tagccgggtt tggagagttt
    18241 ggcgttgagt ttgtccaagg ctttttgcag cttctcggct tctttgctca aacgggcggt
    18301 ttcggcggct ttgtcgattt cgactttcag catcaggcgc gcgccgttgc agacggcgac
    18361 gggcgcgtct tcgctttcgg gtagggcggc gacttgccgt gcttcggtca gtcgggtcat
    18421 catcggcagg tatttgaggt agtccgccaa gtcgtctgcg ctttcgacaa acagcggggc
    18481 tttcacgttg ggctggatgc ccatttcgcc gcgcaggttg cggactgcgc caatcaaatc
    18541 ctgtaacacg gtcatttgcc cgaatgccgt ctgaacaatc tcgccgccgt cggtttcggg
    18601 gaagcgggcg agcatgatgc tgtcggcggt tttcgcgtcg cacataggag cgacggtttg
    18661 ccacagttct tcggtgatga acgggataat cgggtgcagc aggcgcaggg cggcttcgag
    18721 tacgcgcaat aaggtatggc gtgtggcgcg ttggcggctg gcgcagccgg tttggagctg
    18781 cactttggcg agttccaaat accagtcgca atagtcgttc cacacgaagc tgtacagggt
    18841 ttccgccgcc aaatcaaagc ggtaggtttc gtaggcttgc gtaacctgct cgatggtctg
    18901 attcagacgg cctacaatcc acatatcggg gaaggagtag ccgcgcggtt cggtggcggt
    18961 tgcgccgtag ccgcagtctt ggttttcggt gttcatcaag acgaagttgg tggcgttcca
    19021 gattttgttg cagaaattgc ggtagccttc ggcgcgtttg aagtcgaagt tgacgctgcg
    19081 gccgaggctg gcgtagctcg ccatagtgaa gcgcaatgcg tccgcgccca tactcggaat
    19141 gccttcgggg aagagttttt tggtggcttc ttccactttc ggcgcggttt cgggtttgcg
    19201 cagaccggtc gtgcgtttca ccagtagctt gtccaagtcg atgccgtcaa tcaaatcgac
    19261 ggggtcgatg acgttacctt cggatttgga catttttttg ccttcatggt cgcgcacgat
    19321 gccgtggatg tacacgtctt taaacggtac tttgccggtg aagtgggtgg tcatcataat
    19381 catgcgcgcc acccagaaga agatgatttc gtagccggtg accaagacgt tggacggcag
    19441 gaaggctttg agttcgtcgg tttcagacgg ccagccgagc gtggagaacg gcacgagcgc
    19501 ggaggagaac catgtgtcca atacgtcttc ttcgcgggtc aaaccggttt tgccggcttg
    19561 tttttcggct tccgcctgat tgcgggcgac gtaaacattg cctgcttcgt cataccacgc
    19621 ggggatttga tgcccccacc acagttggcg cgagatgcac cagtcttgga tgttgttcat
    19681 ccattggttg taagtgttga cccagttttc agggatgaag cgtaccgcgc cgctgtcgac
    19741 ggcttttttg gctttgtcgg cgaggcttaa acctttgaat tcgctgtcag gttcgccgcc
    19801 gtttggcgtg gcggacatgg cgacaaacca ttggctggtc agcatcggct caatcactga
    19861 gcctgttcgg tcgcctttcg gcgtcatcag cgtgtgcgct ttgatttcga ccaacaagcc
    19921 ttgttcctgc aaatcggcaa ccatttgttt gcgcgcggca aagcggtcca agcctgcgta
    19981 tttttcaggc agggcaaagc ctggttgcgc ttcgcctttg aagttgaaca cttcggcgtt
    20041 tgccagcact ttggcttcca agtcgaacac attaatcagg cgcgtgtcgt ggcgtttgcc
    20101 gacttcgtag tcgttgaagt cgtgcgcggg cgtgattttt acgcagcctg tgccgaagtc
    20161 tttttcgacg tattcgtcgg caatcacggg aatggtgcgg ccggtcagcg gcaggattaa
    20221 ttccttgcca atcaaatggg tataacgttc gtcttcggga ttgacggcaa cggcaacgtc
    20281 gcccagcagc gtttcgggac gggtggtggc gacgatgacg gcttcggcag gattgtccgc
    20341 cagcggatag cggatgtgcc acatagagcc ttgttcttcc acgctttcca cttccaaatc
    20401 agacactgcg gtacccaata ccggatccca gttcaccaag cgtttgccgc gataaatcaa
    20461 accttgctca aacaggcgca cgaacacttc ggttacggtt tcggcgcgca cgtcgtccat
    20521 cgtgaaatac tcgcgcgtcc agtcggcaga acaacccacg cggcgcattt gctgggtaat
    20581 cgtaccgccg gaaacttctt tccattccca cactttttcc aagaattttt cgcgccccaa
    20641 gtcatgacgg gacacgtttt gcgcggcaag ctgacgctcg accacgattt gcgtggcgat
    20701 gcccgcgtgg tcggtgcccg gaatccaggc ggtgttgcag cctttcatgc ggtagtagcg
    20761 ggtcaggccg tccataatgg tttgattgaa ggcgtgtccc atatgcagcg tgccggttac
    20821 gttgggcggc ggcagttgga tggagaaaga cggtttggtc aaatccatat caggttggaa
    20881 atagccctgc tcttcccagt tttgataatg tttggattcg atttcggctg gattgtattt
    20941 gtctaacatg atggaacttt gtgaaattaa ggttattttt gatgtgcgga ttataacgca
    21001 aaaaggccgt ctgaatcatt tcagacggcc tttggcatac aggttttaaa aatggaacaa
    21061 taccaggctg acggcaatca ccgccatgcc cattgtcagg ccgtaaacgg tttcatggcc
    21121 gtctgaatag cgtttggcag ccggcagcag ctcgtccaac gccaaaaaca ccatcacacc
    21181 ggctatcacg ccgaataccg aaccaaacac ggcaggcgac aaaaacggct gcaaaaccaa
    21241 atagcccaaa gccgccccca acggctcggc caagccggat agcagacacg cccacaccgt
    21301 tttcttacgg ctgcgggtgg caaaataaac cggcgcggcg atggaaatgc cctccggaat
    21361 attatggatg gcaatcgcca aggccaaagg catcccgact gctggatttt ccaatgtggc
    21421 aaaaaacgtc gccaagcctt cggggaaatt gtgcgcagta atcgcaaacg ccgccatcat
    21481 gccgactcgc gcgatatggc ggcgtttgct ttcttgaaac gacgggtctt gcgcgtctaa
    21541 agtttcatgc gggttcggca ccagacggtc aatcagcgca atgccgccca tccctgccaa
    21601 aaatgccatg gtcgccgccg caaacgcgtg gtctttatca taaatttcag cgaacgcctc
    21661 gctggactta ctgaaaatct ccgtcaggga aacatacacc atcgcaccgc cggcaaatgc
    21721 caaaccaaac gacaacacgc gcggattggg cgttttggaa aacatcacca agccgctgcc
    21781 taatacggta aacaaaccgg cagccaatgt gatggaaaag gcaacggcca aattggacat
    21841 cgaaaaatcg ggcatgagaa aacctgcgct aaaagctggg acaggttcag actaacactt
    21901 ttaatgtata tgataatagt tattatttat tttattgatt ggataaccga attttgaaac
    21961 aaaaggccgt ctgaaaaatg attttcagac ggcctttaaa tttgaaatgt cgctaaacct
    22021 tatcgctttc cagcttaagc ctgatagcgc gacaggctca aatcgtcgct tcggatttcg
    22081 gtgtctttgc cgctcacgat atcggcggtt aattttgccg aacccagcga catggtccag
    22141 cccaaagtgc cgtggcctgt attcaagaat aagttttcaa agcgggtgcg gccgattaac
    22201 ggcgtgctgt cgggcgtcat cggtctgagg ccgctccaga acaatgcttg gctcaaatcg
    22261 ccgccttccg ggaacaaatc gttgacgacc aaagccaagg tttcgcggcg tttttcgggc
    22321 agtttgattt cgtagcccga caattccgcc atgccgccga cgcggattct gttgtcaaag
    22381 cgcgtgatag cgactttgta gctttcatcc aaaacggtgg acaccggcgc gccgtctgaa
    22441 ttggtgaccg gcagggtcaa ggaatagcct ttgacgggat aaatcggcag atcgaggtct
    22501 aactgcgcca acacagtcct actgaagcag ccgagcgcac agacaacggc atctgcttca
    22561 aaccgccctg tttcggtttc aacggctttg atgcgcagcc cgttatggtc gatgcggctg
    22621 atggtttggt tgaaatgaaa ctgtacgccc ttttcctgac acaatttgta taggttttca
    22681 gtgaagaggt ggcagtcgcc ggtcgcatct gcaggcaggt gcaggccgcc ggcaattttg
    22741 gcggtaacgc gtgccagcgc aggctcaaat tctgcacatt cttcgggttt cagacggcgg
    22801 tacggcacgc cgtagcgttc caaaacggca atgtcttgtt ttgccgcttc gacttctttg
    22861 gtttggcgga aaacctgcaa cgtccctttt ttgcgtccct caaaattcat gccggtttgc
    22921 gcttcaaaac ggcggaacat ttcacggctg tattcggaca tcctgaccat gcgctcttta
    22981 ttgatttgat agcgggatgc cgtgcagttt tgcagcatcc gccacagcca ttcgatttga
    23041 tacaggctgc cgtcggggcg aaacagcaaa ggcggatggc ttttaaacag ccatttcagt
    23101 gctttggtcg gaataccggg tgcagcccaa ggcgtggtat agccgtaaga aagctgacct
    23161 gcattggcaa aactggtttc catcgccacg ccctcggcgc ggtcgatgac cgttacttca
    23221 tgtcctgcct ctgccagata ccacgcggaa gatacgccgg caacacccgc acctaaaaca
    23281 agcactttca tgtttctccc tccgactttt tcaaaacaga cttaatatgc cgtgccgtct
    23341 gaatattcgg attcagacgg cctcggatat taatgcggca attcgccgtt tgtgattttt
    23401 tgtttgaagt cacgcgtttc attgacgatg actttcgcca tcaataaaag tgcaatcagg
    23461 ttgggcaatg ccatcaagcc gttgaatgtg tccgaagcca gccacaccaa atcaaggctc
    23521 aacacggtac ccagcataac ggaagaaaca taacccacgc ggtacaaacc ggcaaatttc
    23581 tcgccgaaaa catacaccgc gcatttctcg ccgtaataac accagccgag aatggttgag
    23641 taggcaaaga aaatcaggcc gatggtaaca atccagccgc caatgccggg cagcattttt
    23701 tggaaagtga cggttgtcag cgccgcgccg ctcaattcag gtttgacaaa ctcgccgcct
    23761 gcgccgagca gacccatcac caaaataatg ccggtaatcg agcaaacgac gatggtgtcc
    23821 aaaaacgtac cggtcatgga aaccaaagcc tgacggacgg ggtggtcggt tttggcggct
    23881 gcggcggcaa tcggtgcaga acccatgccc gcctcattgg agaacacgcc gcgcgccacg
    23941 ccgtagcgga taacggtacc gatagcaccg ccggcgactg ctttcgcgct gaacgcatcg
    24001 gagaaaatca ggttgacggc gggcatcagt gcatcagaat taatcacgat aatggagata
    24061 ccgcccacca cataaaacac tgccatggca ggtacgatga aagaagcggc tttggcgatg
    24121 cctttgatac cgcccaacac aacgatggca gttagaacgg tcaaagtgat gccggtatag
    24181 acaggattga tgccgaagct cgtctgaacc gcttgagcga ctgagttgga ctgcaccgag
    24241 ctgccgatac cgaacgaagc gaatgtgccg aacagcgcaa acgcgacggc catccatttc
    24301 cagtttttgc ccaagccgtt ttcgatgtaa tacatcgggc cgccggacat ttcgcctttg
    24361 gaattgttga cgcggtattt caccgccaac acgccttcgc cgtatttggt tgccataccg
    24421 aaaatggcgg tcatccacat ccaaaatacc gcgcccgggc cgccggttac caccgcagtc
    24481 gccacgccgg cgatgttacc cgtaccgatg gtggcggaca gcgcggtcat caacgccgca
    24541 aaatgggaaa tatcgccttc gtggccttcg ccgccttcat acttctttga cggcacaaac
    24601 gcctgtttca gcgcatagcc caacatagtg aactgtaagc ctttcagcat aacggtcagc
    24661 acaatgccgg tgccgaccag cagcatcaac ataacagatc cccagaccca gccgctgacg
    24721 gtttcgaaaa aggctttgag attgtctaaa aacaattgca tggctttctc ctttgtct
//
LOCUS       DAWGNT010000012        23983 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.012, whole genome shotgun sequence.
ACCESSION   DAWGNT010000012 DAWGNT010000000
VERSION     DAWGNT010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 23983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23983
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.012"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            170..793
                     /gene="lolA"
                     /locus_tag="WHR98_000322"
     CDS             170..793
                     /gene="lolA"
                     /locus_tag="WHR98_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEZ2307060.1"
                     /translation="MMKPHNLFQFLAVCSLTVSVASAQAGAVDALKQFNNDADGISGS
                     FTQTVQSKKKTQTAHGTFKILRPGLFKWEYTSPYKQTIVGDGQTVWLYDVDLAQVTKS
                     SQDQAIGGSPAAILSNKTALESSYTLKEDGSSNGIDYVLATPKRNNAGYQYIRIGFKG
                     GNLAAMQLKDSFGNQTSISFGGLNTNPQLSRGAFKFTPPKGVDVLSN"
     gene            1066..2205
                     /locus_tag="WHR98_000323"
     CDS             1066..2205
                     /locus_tag="WHR98_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEZ2307061.1"
                     /translation="MKKTLVAAAILSLALTACGGGSDTAAHPPSAKPEAEQSGKLNIY
                     NWSDYVDPETVAAFEKETGIKTRSDYYDSNETLEAKVLTGKSGYDLTAPSIANVGRQI
                     KAGAYQKIDKAQIPHYGNIDKDLLKMMEAVDPGNEYAVPYFWGINTLAINTRQVQKAL
                     GTDKLPENEWDLVFNPEYTAKLKSCGISYFDSAIEQIPLALHYLGKDPNSENPEDIKA
                     AVDMMKAVRGDVKRFSSSGYIDDMAAGNLCAAIGYGGDLNIAKTRAEEAANGVEIKVL
                     TPKTGVGVWVDSFMIPRDAQNVANAHRYIDYTLRPEVAAKNGSFVTYAPASRPARDLM
                     DEKYTSDASIFPNKELMEKSFIVSPKSAESAKLGVKLWQGLKAGK"
     gene            2337..3372
                     /locus_tag="WHR98_000324"
                     /pseudo
     CDS             2337..3372
                     /locus_tag="WHR98_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704837.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
     gene            3413..3943
                     /locus_tag="WHR98_000325"
     CDS             3413..3943
                     /locus_tag="WHR98_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEZ2307062.1"
                     /translation="MNAIRTFQNRTPEIHESCMIDEACVVIGEVSLAEDVSVWPCAVL
                     RGDVNSITVGARSNIQDGSVLHVSHKTAAKPEGSPLVIGEDVTVGHKVMLHGCRIGNR
                     VLVGMGTTVLDDAVIEDEVMIGAGSLVPPRKRLEGGYLYVGSPVRQVRVLTDEEKAFL
                     KYSAAHYVKLSKQYGM"
     gene            complement(3977..4093)
                     /locus_tag="WHR98_000326"
     CDS             complement(3977..4093)
                     /locus_tag="WHR98_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor domain protein"
                     /protein_id="HEZ2307063.1"
                     /translation="MPSEPEKRLSDGIFACNSNADGQNQGASDTVIGCVPSA"
     gene            complement(4102..4289)
                     /locus_tag="WHR98_000327"
                     /pseudo
     CDS             complement(4102..4289)
                     /locus_tag="WHR98_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575226.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor"
     gene            complement(4308..5903)
                     /locus_tag="WHR98_000328"
     CDS             complement(4308..5903)
                     /locus_tag="WHR98_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007342770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEZ2307064.1"
                     /translation="MSQEILDQVRRRRTFAIISHPDAGKTTLTEKLLLFSGAIQSAGT
                     VKGKKTGKFATSDWMDIEKQRGISVASSVMQFDYKDHTVNLLDTPGHQDFSEDTYRVL
                     TAVDSALMVIDAAKGVEAQTIKLLNVCRLRNTPIVTFMNKYDREVRDSLELLDEVENI
                     LQIRCAPVTWPIGMGKNFKGVYHILNDEIYLFEAGGERLPHEFDIIKGIDNPELEQRF
                     PLEIQQLRDEIELVQAASNEFNLDEFLAGELTPVFFGSAINNFGIQEILNSLIDWAPA
                     PKPRDATVRMVKPDEPKFSGFIFKIQANMDPKHRDRIAFLRVCSGKFERGMKMKHLRI
                     NREIAASSVVTFMSHDRELVEEAYAGDIIGIPNHGNIQIGDSFSEGEQLAFTGIPFFA
                     PELFRSVRIKNPLKIKQLQKGLQQLGEEGAVQVFKPMSGADLILGAVGVLQFEVVTSR
                     LANEYGVEAVFDSASIWSARWVSCDDKKKLAEFEKANAGNLAIDAGGNLAYLAPNRVN
                     LGLTQERWPDIVFHETREHSVKL"
     gene            complement(6010..6405)
                     /gene="hisI"
                     /locus_tag="WHR98_000329"
     CDS             complement(6010..6405)
                     /gene="hisI"
                     /locus_tag="WHR98_000329"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HEZ2307065.1"
                     /translation="MDKNLLEAVKFDEKGLVCAIAQDAETKRVLMVAWMNAEALQKTV
                     ETGFAHYYSRSRQKQWMKGEESGHTQKVRELRLDCDGDAIVMLIAQNGGIACHTGRES
                     CFYKVWRGGAWETADAVLKDEKEIYGSTH"
     gene            complement(6436..7203)
                     /gene="hisF"
                     /locus_tag="WHR98_000330"
     CDS             complement(6436..7203)
                     /gene="hisF"
                     /locus_tag="WHR98_000330"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEZ2307066.1"
                     /translation="MALAKRIIPCLDVKDGRVVKGVNFIGLRDAGDPVEAAKRYNGEG
                     ADELTFLDITASSDNRDTILHIIEEVAGQVFIPLTVGGGVRTVADIRRLLNAGADKVS
                     INTAAVTRPDLIDEAAGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNPTGLDAVEW
                     AIEMQKRGAGEILLTGMDRDGTKQGFNLPLTRAVAEAVDIPVIASGGVGNVRHLIEGI
                     TEGKADAVLAAGVFHFGEIAIREAKRAMREAGIEVRL"
     gene            complement(7216..7953)
                     /gene="hisA"
                     /locus_tag="WHR98_000331"
     CDS             complement(7216..7953)
                     /gene="hisA"
                     /locus_tag="WHR98_000331"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEZ2307067.1"
                     /translation="MLLIPAIDLKEGRCVRLRQGLMEEATVFSDSPAETALHWFKQGA
                     RRLHLVDLNGAFAGVPQNLPAIKDILAAVAKDIPVQLGGGIRDLKTIGQYLDLGLNDV
                     IIGTAAVKNPDFVREACKAFPGRIIVGLDAKDGMAAIDGWATVTGHHVIDLAKRFEDD
                     GVNSIIYTDIGRDGMMSGVNIDATVKLAQTVRIPVIASGGLTGLDDIRALCAAEKHGV
                     AGAITGRAIYEGSIDFAQAQQLADSLD"
     gene            complement(7986..8624)
                     /gene="hisH"
                     /locus_tag="WHR98_000332"
     CDS             complement(7986..8624)
                     /gene="hisH"
                     /locus_tag="WHR98_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEZ2307068.1"
                     /translation="MQIAIIDYGMGNLHSVLKSVWTAGQLAGKNTEIFLSGDPERVSR
                     ADKVIFPGQGAMPDCIAALTRGGLDEAVKDALKNKPFFGICVGAQLLFDHSEEGNTDG
                     LGWFGGKVRRFERDLRDRQGCRLKVPHMGWNTVRQTQNHPLFKDIPQNTRFYFVHSYY
                     FDPENPETILGESDYPSPFACIVGKDNVFATQFHTEKSHDAGLTMLKNFLNW"
     gene            complement(8755..10257)
                     /gene="pta"
                     /locus_tag="WHR98_000333"
     CDS             complement(8755..10257)
                     /gene="pta"
                     /locus_tag="WHR98_000333"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEZ2307069.1"
                     /translation="MAKVLIVPVSAGLDASAAAQAFAKALDAQIFQAVDATAETLLAQ
                     GKSDDWFDALVGKVAALDAANLVIEGIAPDADKIYLAGKNVELALSLDAAAVFAVRSD
                     NADADELANRLNLAKQFFAAAPGVLEGFVVDGAAASVAEAAAEKTGLTFFGSSDALKD
                     VSVLAGREAKRLSPAQFRYNLIDFARQADKRIVLPEGAEPRTVQAAAICHEKGIARCV
                     LLAKREEVEAVAKERGISLPDSLEIIDPASLVEQYVGPMCELRKSKGLTPEDARKQLQ
                     DTVVLGTMMMAQNDVDGLVSGAVHTTANTIRPALQLIKTAPGASLVSSVFFMLLPNQV
                     LVFGDCAVNPNPTAQQLADIAIQSADSAKAFGIDPKVAMISYSTVNSGSGPDVDTVIE
                     ATKLAREKRPDLAIDGPLQYDAATVPGVGKSKAPGSPVAGQATVLVFPDLNTGNCTYK
                     AVQRSANVLSVGPLLQGLRKPVNDLSRGALVEDIVFTIALTAVQAKQMEG"
     gene            complement(10442..11500)
                     /gene="fbpC"
                     /locus_tag="WHR98_000334"
     CDS             complement(10442..11500)
                     /gene="fbpC"
                     /locus_tag="WHR98_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter ATP-binding protein FbpC"
                     /protein_id="HEZ2307070.1"
                     /translation="MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIVGASGCGKT
                     TLLRCLAGFEQPDFGEISLSGRTIFSKNTNLPVRERRLGYVVQEGVLFPHLTVYRNTA
                     YGLGNGKGKTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRVALARALAPDPELI
                     LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL
                     QTASPHELYRQPADLDAALFIGEGIVFPAALNADGTADCGLGRLPVQSGAPAGTRGTL
                     LIRPEQFSLHPHSAPTASIHAVVLKTTPKARHTEISLRVGQTVLTLNLPSAPTLSDGI
                     SAVLHLDGPALFFPGNTL"
     gene            complement(11521..13038)
                     /gene="fbpB"
                     /locus_tag="WHR98_000335"
     CDS             complement(11521..13038)
                     /gene="fbpB"
                     /locus_tag="WHR98_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease FbpB"
                     /protein_id="HEZ2307071.1"
                     /translation="MSPKKIPIWLTGLILLIALPLTLPFLYVAMRSWQVGINRAVELL
                     FRPRMWDLLSNTLTMMAGVTLISIVLGIACALLFQRYRFFGKTFFQTAITLPLCIPAF
                     VSCFTWISLTFRVEGFWGTVMIMSLSSFPLAYLPVEAALKRISLSYEEVSLSLGKSRL
                     QTFFSAILPQLKPAIGSSVLLIALHMLVEFGAVSILNYPTFTTAIFQEYEMSYNNNTA
                     ALLSAVLMAVCGIVVFGESIFRGKAKIYHSGKGVARPYPVKTLKLPGQIGAIVFLSSL
                     LTLGIIIPFGVLIHWMMVGTSGTFALVSVFDAFIRSLSVSALGAILTILCALPLVWAS
                     VRYRNFLTVWIDRLPFLLHAVPGLVIALSLVYFSINYTPAVYQTFIVVILAYFMLYLP
                     MAQTTLRTSLEQLPKGMEQVGATLGRGHFFIFRTLVLPSILPGITAAFALVFLKLMKE
                     LTATLLLTTDDVHTLSTAVWEYTSDAQYAAATPYALMLVLFSGIPVFLLKKYAFK"
     gene            complement(13106..14101)
                     /gene="fbpA"
                     /locus_tag="WHR98_000336"
     CDS             complement(13106..14101)
                     /gene="fbpA"
                     /locus_tag="WHR98_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter substrate-binding protein
                     FbpA"
                     /protein_id="HEZ2307072.1"
                     /translation="MKTSIRYALLAAALTAATPALADITVYNGQHKEAAQAVADAFTR
                     ATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTIN
                     ETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYAPT
                     SGAFLEQVVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYY
                     WHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLASKEG
                     QRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK"
     gene            complement(14352..14822)
                     /locus_tag="WHR98_000337"
     CDS             complement(14352..14822)
                     /locus_tag="WHR98_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4375 domain-containing protein"
                     /protein_id="HEZ2307073.1"
                     /translation="MTDTDTQADRFEQMMWQAVDKLFEQHDGKLESMDGREQELVLIW
                     RTEADIGNGGILQFVCNWGFPAAEKTCSVLKKIGAIHSAMLIHRAADALRKEIRHLQS
                     EGKNLKEMWDITKHLDNKTASLPNSLDEQYWQDPDKLYLPGWQYYSGNPVQTLF"
     gene            complement(14880..16256)
                     /gene="argH"
                     /locus_tag="WHR98_000338"
     CDS             complement(14880..16256)
                     /gene="argH"
                     /locus_tag="WHR98_000338"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEZ2307074.1"
                     /translation="MHDKTWSGRFNEPVSELVKQYTASIGFDRRLAEWDIQGSLAHAQ
                     MLKETGVLDEGDLADIRRGMAEILEEIRSGKIEWSSDLEDVHMNIERRLTDKIGDAGK
                     RLHTGRSRNDQVATDIRLWLRDQITVIQNLIQNLQTALLDLAEQNAETVMPGFTHLQV
                     AQPVSFGHHMLAYVEMLGRDNERMADCRRRVNRMPLGAAALAGTTYPIRREITAELLG
                     FEQICQNSLDAVSDRDFAVEFTAAASLVMVHLSRLSEELILWMSPRFGFIDIADRFCT
                     GSSIMPQKKNPDVPELVRGKSGRVIGHLIGLITLMKSQPLAYNKDNQEDKEPLFDTAD
                     TLIDTLRIYADMMRGVTVKPDNMRAAVMQGFATATDLADYLVKKGMPFRDAHEVVAQA
                     VRHADEAGVDLSELPLEVLQGFSDLIADDVYGVLTPEGSLNARNHLGGTAPEQVRFQV
                     KRWREMLA"
     gene            complement(16275..17144)
                     /gene="galU"
                     /locus_tag="WHR98_000339"
     CDS             complement(16275..17144)
                     /gene="galU"
                     /locus_tag="WHR98_000339"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEZ2307075.1"
                     /translation="MKPIRKAVFPVAGMGTRFLPATKASPKEMLPIVDKPLIQYAVEE
                     AVEAGCTEMVFVTGRNKRSIEDHFDKAYELETELEMRHKDKLLEHVRNILPPHITCLY
                     IRQAEALGLGHAVLCARAAIGDEPFAVILADDLIDAQKGALKQMVEVYERSGNSILGV
                     ETVEPSQTGSYGIVETEQLKQFQRIIGIVEKPKPEDAPSNLAVVGRYILTPRIFDLLT
                     GLPRGAGNEIQLTDGIAKLLDHEFVLAHPFEGTRYDCGSKLGYLEATVAYGLKHPETG
                     EPFRRLLEKYRTE"
     gene            complement(17172..17771)
                     /gene="rdgB"
                     /locus_tag="WHR98_000340"
     CDS             complement(17172..17771)
                     /gene="rdgB"
                     /locus_tag="WHR98_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEZ2307076.1"
                     /translation="MSEKPEKIVLASGNAGKLKEFGNLFEPYGITVLPQSEFSIPECP
                     EPYSTFVENALAKARHAAGHSGLPALADDSGICAAALNGAPGIHSARYAGSNPKSDTA
                     NNLKLAAELAGKADKSCCYVCVLVFVRHKDDPRPIIAEGVWHGQWNGVPAGENGFGYD
                     PYFYLPGHGKTAAELDSEVKNRESHRAQALAELLRKLAL"
     gene            complement(17764..17997)
                     /locus_tag="WHR98_000341"
     CDS             complement(17764..17997)
                     /locus_tag="WHR98_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307077.1"
                     /translation="MNRRKIYLLSVALFTLAFMLLVLLGAYLLTVGSKAFAVASFLFA
                     FGALFGQIGSLALYLRHKSLRAAQSAAKENRYV"
     gene            complement(18105..18638)
                     /locus_tag="WHR98_000342"
     CDS             complement(18105..18638)
                     /locus_tag="WHR98_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEZ2307078.1"
                     /translation="MADFNQILTPGDVDGGIINVVNEIPAGSNHKIEWNRKLAAFQLD
                     RVEPAIFAKPTNYGFIPQTLDEDGDELDVLLVTEQPLATGVFLEARVIGVMKFVDDGE
                     VDDKIVCVPADDRNNGNAYKTLSDLPQQLIKQIEFHFNHYKDLKKAGTTKVESWGDAE
                     EAKKVIKESIERWNKQA"
     gene            complement(18740..19198)
                     /gene="nudB"
                     /locus_tag="WHR98_000343"
     CDS             complement(18740..19198)
                     /gene="nudB"
                     /locus_tag="WHR98_000343"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HEZ2307079.1"
                     /translation="MPMAKPLKYPVSALVVLYSGDGGILLIERTHPKGFWQSVTGSLE
                     PGETVAQTARREVWEETGILLADGQLQDWHDSTVYEIYHHWRHRYPKGVFENREHLFS
                     AEIPRDTPIALQPEEHVSYGWFGLEEAAEKVFSPSNRRAILELGRFLGKR"
     gene            19409..19485
                     /locus_tag="WHR98_000344"
     tRNA            19409..19485
                     /locus_tag="WHR98_000344"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:19443..19445,aa:Pro,seq:ggg)
     gene            19643..21469
                     /gene="mafB"
                     /locus_tag="WHR98_000345"
     CDS             19643..21469
                     /gene="mafB"
                     /locus_tag="WHR98_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 2"
                     /protein_id="HEZ2307080.1"
                     /translation="MGISRKISLILSILAVCLPMHAHASDLANDSFIRQVLDRQHFEP
                     DGKYHLFGSRGELAERSGHIGLGKIQSHQLGNLMIQQAAIKGNIGYIVRFSDHGHEVH
                     SPFDNHASHSDSDEAGSPVDGFSLYRIHWDGYEHHPADGYDGPQGGGYPAPKGARDIY
                     SYDIKGVAQNIRLNLTDNRSTGQRLADRFHNAGSMLTQGVGDGFKRATRYSPELDRSG
                     NAAEAFNGTADIVKNIIGAAGEIVGAGDAVQGISEGSNIAVMHGLGLLSTENKMARIN
                     DLADMAQLKDYAAAAIRDWAVQNPNAAQGIEAVSNIFMAAIPIKGIGAVRGKYGLGGI
                     TAHPIKRSQMGAIALPKGKSAVSDNFADAAYAKYPSPYHSRNIRSNLEQRYGKENITS
                     STVPPSNGKNVKLADQRHPKTGVPFDGKGFPNFEKHVKYDTKLDIQELSGGGIPKAKP
                     VSDAKPRWEVDRKLNKLTTREQVEKNVQEIRNGNKNSNFSQHAQLEREINKLKSADEI
                     NFADGMGKFTDSMNDKAFSRLVKSVKENGFTNPVVEYVEINGKAYIVRGNNRVFAAEY
                     LGRIHELKFKKVDFPVPNTSWKNPTDVLNESGNVKRPRYRSK"
     gene            21472..21936
                     /locus_tag="WHR98_000346"
     CDS             21472..21936
                     /locus_tag="WHR98_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307081.1"
                     /translation="MAIWNYRYYLIPSAAIRNKFNANKDIILDEYRSNGFQNFNENKS
                     FENYFIDNDVILLSIINEAKKQLKLKESWDKDAIMFCDNFGNSLTVWPDDIECELDLR
                     FDYTKFIQKTIDWAIKYNCLLVIEKTGNVVSPNINNLMYEIKAYLESKPWPI"
     gene            22125..22307
                     /locus_tag="WHR98_000347"
                     /pseudo
     CDS             22125..22307
                     /locus_tag="WHR98_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223961.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
     gene            22319..22606
                     /locus_tag="WHR98_000348"
     CDS             22319..22606
                     /locus_tag="WHR98_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HEZ2307082.1"
                     /translation="MQLEIIGSKIYTEQDFHNQISKIFSIQDYYGNNLDALWDLLSTN
                     VERPITLVWKDAMFSKNQLENIFIEIVNVLERVKKQDEDYGFEEKFNYILE"
     gene            23102..>23983
                     /locus_tag="WHR98_000349"
     CDS             23102..>23983
                     /locus_tag="WHR98_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VENN motif pre-toxin domain-containing protein"
                     /protein_id="HEZ2307083.1"
                     /translation="MKSKSGVIASLTGAAVGGTPVDAQTGGAVGQNAVENNLYLTSEA
                     LKKDKQTARKIYSVIKEQVKHECSSTGRITECRQNIGRIIEFTQDKRFDSRFKDLKKE
                     SLYYLNKHPDLVASYLKAEYEKLDREDKSILHRYISPGAEIVSGSLGVVLSGVAGGGS
                     CAETFGLGCAAALVGVTSSYDHVITGTKNFGKKASEQRPTIAVQALKQLGLSEQAAEY
                     VQFSIDLFSVGKSGGGIPKAKPVFDAKPRWEVDRKLNKLTTREQVEKNVQETRRRSQS
                     SQFKAHAQREWENKTGLD"
BASE COUNT         5633 a         5765 c         6826 g         5759 t
ORIGIN      
        1 gcggcacaca ttaaagggca gcgtggcgcg cctgcctttt ccgagcggtc aaaaaaatca
       61 gccctcggaa aacgctgttt gtaaaatgca aaccgcccgt aacgccgccc gtatgattgt
      121 tttgccgcgc cgatacttta cgccacaccc atcccaacaa ggaaaaataa tgatgaaacc
      181 gcacaacctg ttccaatttc tcgccgtttg ctccctgacc gtctccgtcg cttccgcaca
      241 ggcgggcgcg gtggacgcgc tcaagcaatt caacaacgat gccgacggta tcagcggcag
      301 cttcacccaa accgtccaaa gcaaaaagaa aacccaaacc gcgcacggca cgttcaaaat
      361 cctgcgcccg ggcctcttca aatgggaata cacttcgccc tacaaacaga ctattgtcgg
      421 cgacggtcaa accgtttggc tctacgatgt cgatttggca caagtgacca agtcgtccca
      481 agaccaggcc ataggcggca gccccgccgc catcctgtcg aacaaaaccg ccctcgaaag
      541 cagctacacg ctgaaagagg acggttcgtc caacggcatc gattatgtgc tggcaacgcc
      601 caaacgcaac aacgccggct accaatacat ccgcatcggc ttcaaaggcg gcaacctcgc
      661 cgccatgcag cttaaagaca gcttcggcaa ccaaacctcc atcagtttcg gcggtttgaa
      721 taccaatccc caactctcgc gcggcgcgtt caagtttacc ccgcccaaag gcgtggacgt
      781 gttgagcaac tgatgccgtc cgccccgatg ccgtctgaaa gccgccgagg cttcagacgg
      841 cattttcacg caggcggaac aatgtcccgc attaccgccc gatcgggcat cggaacggca
      901 aacccgtgaa aattaacggt tgcgccccgg ctgtttttgc cgtttaatgc aaaccttgct
      961 gcaccaaggg ccaagaaagc cgaccggccg cccccacagc ttccgatgca ggcggcccgg
     1021 ccgtccctgc aatgtttttt atttttgaac gaaaggtcga aaaccatgaa aaaaacactg
     1081 gtggcggcgg caatcctgag cctcgccttg actgcgtgcg gcggcggaag cgataccgcc
     1141 gcccaccccc cctccgccaa gcccgaagcc gaacaatcgg gcaaactcaa tatctacaac
     1201 tggtcggatt atgtcgatcc cgaaaccgtc gccgcctttg aaaaagaaac cggcatcaag
     1261 acgcgttccg attattacga cagcaacgaa acactggagg caaaagtcct gaccggcaaa
     1321 tccggctacg acctgaccgc gccgtccatc gccaacgtcg gccggcaaat caaagcgggc
     1381 gcgtatcaga aaatcgacaa ggcgcaaatc ccccattacg gcaacatcga taaagatttg
     1441 ctgaaaatga tggaagccgt cgatccgggc aacgaatacg ccgtccccta tttctggggc
     1501 atcaacacct tggcaatcaa cacgcggcag gtgcaaaagg cattgggtac ggacaagctg
     1561 cccgaaaacg aatgggattt ggtgttcaac cccgaataca ccgccaaact caaatcctgc
     1621 ggcatcagct atttcgacag cgcaatcgaa cagattccct tggcgttgca ctatttgggc
     1681 aaagacccca acagtgaaaa tcccgaagac atcaaagccg ccgtcgatat gatgaaagcc
     1741 gtccggggcg acgtgaaacg cttcagctct tccggctata tcgacgatat ggcggcaggc
     1801 aacctgtgtg ccgccatcgg ttacggcggc gatttgaaca ttgccaaaac ccgtgccgaa
     1861 gaagccgcaa acggcgtgga aatcaaagta ttgaccccga aaaccggcgt gggcgtgtgg
     1921 gtggattcct ttatgattcc gcgcgacgcg caaaacgttg ccaacgccca ccgctatatc
     1981 gactacacgc tccggcccga ggtggcggcg aaaaacggca gcttcgttac ctacgcgccc
     2041 gccagccgcc ccgcgcgcga tttgatggat gaaaaataca cctccgacgc atcgattttc
     2101 ccgaacaaag aactgatgga aaaaagtttc atcgtatcgc ccaaatccgc agaatccgcc
     2161 aaactgggcg tgaagctgtg gcaagggctc aaggccggaa aataaccgca acctctgccg
     2221 tctgaaacct ttcgggcggc aggaaacggc gcgtccgtta tcaaacaggg ggcgtttccc
     2281 cgcccgcctg ttatgattgg gttaagatta aaatgattta gtaaaatgag aaagatatgg
     2341 atttaagtat cgtagttccc atttataatg tcgagagtta tttggaagcg tgtctaaatt
     2401 ccatagaacc tatattaagt aatgaaaatg tcgaacttat ccttgtgaat gacgggtcaa
     2461 aagacggaag tgaagatata tgttataaat atatagataa aacaacaaac aacaaacaac
     2521 aaacaacaaa caacaaacaa caaacaacaa acaacaaaca acaccagata ccgaacacca
     2581 aacatcaaat atatatatca ggataaccaa gggacggcag aagctaggaa taccggaata
     2641 aaaaattcaa acggaaaata tatagtcttt attgattcgg atgattttat taattgtcag
     2701 gtcttgctgg attttcttag taaagatgat attgatatgc cggatgtggt ttttttaaat
     2761 gcggttaaat atgataaggg aagtgtttca cattttggcg aagattatca gcctgaaaaa
     2821 atactcaagc aatccaaagt cgaagttttg aaaggattat gccgatttag aaaatttccg
     2881 ggttcggcgt gtaataagat tataaaaagg gaattgatta tcaaagaaaa actgtttttt
     2941 gaaaaagagg tttatgccga agatatcgaa tggtcaatga gattatttaa tgcggcaaca
     3001 actttttctt atttggacgg ttgttattac tattatcggc agggaagaaa agattctaaa
     3061 acaggaactg tttcggaaaa aagtataaag tcattattat atattttgga gaaaaatgcg
     3121 gaaatggaat ttgataggga tatatcaagt tatctttatt cttttctttc ctacgaatat
     3181 ctcgttttgc tttttatcat gacgagtaaa aatatagagt gtgatgctga tataaaaaga
     3241 agggcgtatc atttaaggtt tatgctgtta aagtccaata aattgatata taagctgata
     3301 ttcccgataa tcacattatt cggggtcgat attacaggca ggattttaaa agcaatcagg
     3361 gggaatattt aataaatcct ttaacactat acatcttacc gaaggaggaa aaatgaacgc
     3421 aatccgaact ttccaaaacc gcacgcccga aatccacgaa agctgtatga tagacgaagc
     3481 gtgcgtcgtc atcggcgaag tgtcgcttgc cgaagacgtt tccgtgtggc cgtgcgccgt
     3541 gttgcgcggc gatgtgaaca gcatcaccgt cggcgcgcgc agcaatatac aggacggcag
     3601 cgtcctgcac gtttcccaca aaaccgccgc caaacccgaa gggtcgccgc tggttatcgg
     3661 cgaagacgtt accgtggggc acaaagtgat gctgcacggc tgccgtatcg gcaaccgcgt
     3721 cctggtcggc atggggacga cggttctgga cgatgccgtg attgaggacg aagtgatgat
     3781 cggcgcgggc agcctcgtgc ctccgcgcaa acgtttggag ggcggctatc tttatgtcgg
     3841 ttcgccggtc agacaagtgc gcgtgttgac cgatgaggaa aaagcctttt tgaagtattc
     3901 cgccgcgcat tatgtgaagc tgtcgaaaca gtacgggatg tgaaatcaca tcggcgttct
     3961 tgcgtcagcc ccaaattcat gcggatggga cgcatccgat aacggtatcc gatgcgcctt
     4021 gattttgacc gtctgcgttt gagttgcagg caaaaatgcc gtctgaaagc cttttttcgg
     4081 gttcagacgg cattttatcg cctaaagttt gaccgaatgt tcgcgcgttt cgtggaacac
     4141 gatgtccggc cagcgttctt gcgtcagccc taaattcatg aggacgggat gcccgataac
     4201 ggtatccgat gcgtcttgat tttgatcggt gcatttgagt tgcaggcaaa aatgccgtct
     4261 gaaagccttt tttcgggttc agacggcatt ttatcgccga ttgcttttta cagtttaacc
     4321 gaatgttcgc gcgtttcgtg gaacacgatg tccggccaac gttcttgcgt caaccccaaa
     4381 ttcacgcggt tgggggcgag gtaggcgagg ttgccgcccg cgtcgatggc gaggttgccc
     4441 gcgttggctt tttcaaactc cgccagtttt ttcttgtcgt cgcacgatac ccagcgcgcc
     4501 gaccagatgg atgcgctgtc gaacacggct tctacgccgt attcgttggc cagccgcgag
     4561 gtaacgactt caaactgcaa cacgccgacc gcgcccaaaa tcaaatccgc gccgctcatc
     4621 ggtttgaata cctgtaccgc gccttcttcg ccaagctgtt gcaaaccttt ttgcagttgc
     4681 ttgattttca gcgggttttt gatgcggacg ctgcggaaca gttcgggcgc aaagaatggg
     4741 atgccggtaa acgccagttg ttcgccttcg gagaagctgt cgccgatttg gatgttgccg
     4801 tggttcggga tgccgatgat gtcgccggcg taggcttctt ccaccagctc gcggtcgtgc
     4861 gacataaagg ttaccacgct ggaggcagcg atttcgcggt tgatgcgcag gtgtttcatc
     4921 ttcataccgc gctcgaattt gccggagcag acgcgcaaga aggcgatgcg gtcgcggtgt
     4981 ttcggatcca tattggcttg gattttaaag ataaatccgg agaatttcgg ctcgtccggc
     5041 ttgaccatac gtacggtcgc gtcgcgcggt ttcggcgcgg gcgcccagtc aatcaatgaa
     5101 ttgaggattt cctgaatacc gaagttgtta atcgcagagc cgaagaatac gggcgtgagt
     5161 tcgccggcga ggaattcgtc gagattaaac tcgttggaag ccgcctgcac caattcgatt
     5221 tcgtcgcgca actgctggat ttccaatgga aagcgttgtt ccaattcggg attgtcgatg
     5281 cctttgatga tgtcgaactc gtgcggcaga cgttcgccac cggcttcaaa gagatagatt
     5341 tcgtcgttca ggatgtggta cacgcctttg aagtttttgc ccatgccgat cggccaggtt
     5401 acgggcgcgc agcggatttg caggatgttt tccacttcgt ccagcaactc caaagaatcg
     5461 cgcacttcgc ggtcgtattt gttcatgaac gtgacaatcg gcgtattgcg caggcggcag
     5521 acgttcaaga gtttgatggt ttgcgcttcc acaccttttg ccgcgtcgat gaccatcaac
     5581 gcgctgtcca cggcggtcag aacgcggtag gtgtcttcgg agaagtcttg gtgtcccggc
     5641 gtgtccaaga ggttgacggt gtggtctttg tagtcgaact gcatcacgct tgatgccacg
     5701 gaaatgccgc gctgcttctc gatgtccatc cagtcggagg tggcgaattt gccggttttt
     5761 ttgcctttta ccgtacccgc gctctgaatc gcgcccgaaa acagcaacag cttttcggtc
     5821 agcgtggttt tacccgcgtc ggggtgggag atgatggcaa acgtgcggcg gcggcgcact
     5881 tggtcgagga tttcttggga catggttttc tttgcaaaaa ggttcaggcc gcttttcaga
     5941 cggcccggac agtgtttgag acggcgaaat tgtacaaaaa aatgcctgat aattcaatgt
     6001 tggaggcggt cagtgcgtgc tgccgtaaat ctctttttcg tctttcagga cggcatcggc
     6061 ggtttcccac gcgccgccgc gccagacttt gtaaaagcag ctttctcgcc cggtgtggca
     6121 ggcgatgccg ccgttttggg cgatgagcat cacaatggcg tcgccgtcgc agtcgaggcg
     6181 cagttcgcgg actttttgcg tgtgtcccga ctcttcgccc ttcatccatt gtttttggcg
     6241 cgaacggctg taatagtggg caaagccggt ttcgacggtt ttttgcaggg cttcggcgtt
     6301 catccacgct accattaaaa cacgtttggt ttcggcatct tgggcgatgg cgcaaaccaa
     6361 acctttttcg tcaaatttga cggcttcaag caggttttta tccatatttc ctttcagacg
     6421 gcatagtcgg ggcggtcaga ggcgcacttc gatgccggct tcgcgcatag cgcgtttggc
     6481 ttcgcggatg gcgatttccc cgaaatggaa aacgccagcg gcaagtacgg catcggcttt
     6541 gccttcggtt atgccttcaa tcaggtgccg gacattgccg accccgccgg aggcgatgac
     6601 ggggatgtcg acggcttcgg caacggcgcg ggtcagcggc aggttgaaac cctgtttcgt
     6661 accgtccctg tccataccgg taagcaggat ttcgcccgcg ccgcgttttt gcatttcgat
     6721 cgcccattcc accgcatcca aaccggtcgg attgcgcccg ccgtgggtaa agatttccca
     6781 gcgtgtgttt tcggggttga cggctttggc atcgacggcg gcgacgatgg cttgcgaacc
     6841 gaaaaatccg gcggcttcgt caatcaggtc gggacgggta acggcggcgg tgttgatgct
     6901 gactttgtcc gcgccggcat tgagcaggcg gcggatgtcg gcaacggtgc gtacgccgcc
     6961 gccgacggtc agcgggatga agacttgtcc ggcaacttct tcgatgatgt gcaggatggt
     7021 atcccggttg tcggatgagg cggtgatgtc gaggaaggtc aattcgtccg cgccttcgcc
     7081 gttgtagcgt ttggcggctt cgacggggtc gcccgcgtcg cgcaaaccga tgaagttcac
     7141 gcctttgacg acgcgcccgt cttttacgtc gagacagggg atgatgcgtt ttgccagtgc
     7201 cataatcgga tgcctttagt cgagggaatc tgccagttgc tgcgcttggg caaaatcgat
     7261 gctgccctcg taaatcgcgc ggccggtaat cgcgcctgct acgccatgtt tttcggcggc
     7321 acacagggcg cggatgtcgt ccaagccggt cagtccgccg gaggcgatga cgggaatgcg
     7381 gacggtttgg gcgagtttga ccgtcgcgtc gatgttcacg ccgctcatca taccgtcgcg
     7441 cccgatgtcg gtgtagatga tgctgttgac gccgtcgtct tcaaagcgtt ttgccaaatc
     7501 aattacatga tgcccggtta cggttgccca gccgtcgatg gcggccatac cgtctttggc
     7561 atccagcccg acaataatcc tgccggggaa ggctttgcac gcctcgcgca cgaagtcggg
     7621 gtttttgacc gccgccgtgc cgataatcac gtcgttcaga cccaaatcca aatattgtcc
     7681 gatggttttc aaatcgcgta tgccgccgcc gagctgtacg gggatgtctt tggcgacggc
     7741 ggcaaggatg tctttgatgg cgggcaggtt ttgcggaacg ccggcaaacg cgccgttcaa
     7801 atctaccaga tgcaggcggc gcgcgccttg tttgaaccag tgcagtgcgg tttcggcggg
     7861 cgaatcggaa aagacggtcg cctcttccat cagcccttgt ctcaggcgga cgcagcgtcc
     7921 ttctttcaaa tcgatggcgg gtatcagcag cataattttt ctccttgtgc ggggccgtgt
     7981 ccggcttacc agtttaaaaa gtttttcaac atcgtcagcc cggcatcgtg gcttttttcg
     8041 gtgtgaaatt gcgtggcgaa tacgttgtct ttgccgacga tgcaggcaaa cggggacggg
     8101 tagtcgcttt cgcccaatat ggtttcggga ttttcggggt cgaaatagta gctgtggacg
     8161 aagtaaaaac gcgtgttttg gggaatatct ttaaacagcg ggtggttttg ggtttggcgc
     8221 acggtgttcc agcccatatg cgggactttc agacggcatc cctgccggtc gcggaggtcg
     8281 cgctcaaagc gtctgacttt gccgccgaac cagcccaagc cgtcggtgtt tccttcttca
     8341 ctgtggtcga ataaaagttg cgcgccgacg cagattccga aaaagggttt gttttttaag
     8401 gcatctttga ctgcctcgtc caagccgccg cgcgtcagtg ccgcaataca gtcgggcatc
     8461 gcgccctgcc cgggaaaaat gactttgtcg gcgcgggaca cgcgttcggg gtcgccgctt
     8521 aaaaagattt cggtattttt tccggcaagc tgccccgccg tccagacgga tttcaatacg
     8581 gaatgcaggt tgcccatacc gtaatcgata atggcgattt gcatggcttc ctcctctttt
     8641 tttgcaatat ggctgcgatt ttaacaaaca aatgtgccgt gctgataaaa atgccgtctg
     8701 aaaacgggag tctgtcttca gacggcatag ggtttaaacc cggaaagccg tttgtcagcc
     8761 ttccatttgt tttgcctgaa cggcagttag ggcgatggtg aacacgatgt cttccaccag
     8821 cgcgccgcgc gacaggtcgt tgaccggttt gcgcaggcct tgcagcagcg ggccgacgct
     8881 taagacgttg gcactgcgtt ggacggcttt ataggtgcag ttgccggtgt tcaggtcggg
     8941 gaagaccaaa acggttgcct gtcctgccac cgggctgccc ggagctttgg atttgcccac
     9001 gcccggcacg gttgccgcat catattgcag cgggccgtcg atggcgaggt cggggcgttt
     9061 ttcccgggca agtttggttg cttcgatgac ggtatcgaca tcggggccgc tgccggagtt
     9121 gacggtggag taggaaatca tcgccacttt cgggtcgatg ccgaaggctt ttgcggaatc
     9181 ggcagactgg atggcgatgt cggcaagctg ttgcgcggtc gggttcggat taaccgcgca
     9241 gtcgccgaag acgaggactt ggttgggcag cagcataaag aatacgctgg acacgaggct
     9301 tgcgcccggt gcggttttaa tcagttgcaa agcggggcgg atggtgttgg cggtggtgtg
     9361 aaccgcaccg gataccaaac cgtccacatc attttgcgcc atcatcatcg taccgagtac
     9421 cacggtgtct tgcagttgct tgcgcgcgtc ttcgggtgtc aggcctttgg atttgcgcag
     9481 ttcgcacatc ggtccgacgt attgttcgac caatgaggcg ggatcgatga tttccaaaga
     9541 gtcgggcagg ctgatgccgc gttctttggc aacggcttcg acttcttcgc gtttggcaag
     9601 caggacgcag cgggcaatgc ctttttcgtg gcagatggcg gcggcttgga cggtgcgggg
     9661 ttctgcgccc tcaggcagga cgatgcgttt gtcggcttgg cgggcgaagt cgatcaggtt
     9721 gtagcggaat tgcgccggcg acaggcgttt tgcttcgcgg cctgccaata cggatacgtc
     9781 tttcagcgcg tcgctcgaac cgaagaaggt caggccggtt ttttcggctg ccgcttcggc
     9841 aacggaggct gccgcgccgt ccacgacaaa accttccaat acgcccggcg cggcggcgaa
     9901 gaactgtttg gcaaggttca gccgatttgc cagttcgtcg gcatcggcgt tgtcggaacg
     9961 gacggcgaag acggctgccg cgtcaaggga caatgccagt tcgacgtttt tgcctgcgag
    10021 gtagattttg tcggcatcgg gcgcgatgcc ttcgatgacg aggttggcgg catcgagtgc
    10081 ggcaactttg ccgaccagtg cgtcgaacca gtcgtcgctt ttgccttgcg cgagcagggt
    10141 ttcggcggtt gcgtcaacgg cttggaaaat ttgtgcgtcc agtgcttttg caaaggcttg
    10201 tgcggcggcg gaggcgtcca gtccggcaga tacgggtacg atgagtactt ttgccatgat
    10261 atatcctttc gtatgctgcg gtgtgcggca tatgtggttg gaaggggcgg catataggca
    10321 gaaacggctg cctgcgtgcc gtgcgtgccg tgtttggctt gaggcgcgca ggttgaatat
    10381 agcaaacaaa ttctgtttcc aacaagataa atatccgcag gcttgtggat gctgccgcct
    10441 ttcagagggt atttccgggg aagaacaggg cgggaccgtc caaatggagg acggcggaaa
    10501 tgccgtctga cagggtgggg gcggaaggga ggttgagcgt gaggacggtt tgtccgaccc
    10561 ggaggctgat ttcggtatgc cgcgctttgg gcgtggtttt gagaaccacg gcgtgaatgg
    10621 aggcggtggg tgcggaatgg gggtgaaggc tgaactgttc cggacggatg agcagtgtgc
    10681 cgcgtgtgcc tgcgggtgcg ccgctttgaa cgggcaggcg gcccaatccg caatcggcgg
    10741 tgccgtcggc gttgagcgcg gcggggaaca cgatgccttc gccgataaac agggcggcat
    10801 caaggtcggc aggttgtcgg tacaattcgt gagggcttgc agtttggagg atgcgcccct
    10861 gtttcatcac ggcaatccgg tcggcgtatt gcagggcttc ttcgcggtcg tggctgacga
    10921 aaacggcaga tttgccgttg gcgcgcaggg cggcaatcat gtcttcgcga atctggcggc
    10981 gcaactgttc gtccagcgcg ctgaagggtt cgtccaacaa aatcagttcg ggatcgggtg
    11041 cgagggcgcg ggcgagggcg acgcgctgtt gctgtccgcc cgaaagttcg tgcggatagc
    11101 gtccggcaag ttcggaaatg ccggtcaatt ccaacatagc ttcgatgcgc tgccgctctt
    11161 gcgccgtctt gcctttgccg ttgcccagcc cgtaggcggt gttgcggtaa acggtcaggt
    11221 gggggaacag cacaccttcc tgtacgacat aacccaaacg gcgttcgcgg acggggaggt
    11281 tggtattttt cgagaagatg gttctgccgg aaagcgaaat ttcgccaaaa tcgggttgtt
    11341 caaaaccggc aaggcagcgt aaaagggtgg ttttgccgca gccggacgca ccgacgataa
    11401 agaggatttc gcccgggtcg aggctgagcg aaatgtcgtt taaaaccggg gtgttttgaa
    11461 aacttttgga caggtgtccg atgtgcaggg cggcggtcat ggcggtactt cctcaagctg
    11521 ttatttgaag gcgtatttct tcagcaggaa tacggggatg ccggaaaata ataccagcat
    11581 cagcgcgtaa ggggtggcgg cggcgtattg tgcgtctgat gtgtattccc aaacggcggt
    11641 ggagagtgtg tggacatcgt cggtggtcag cagcagggtg gcggtcagct ctttcatcag
    11701 tttgaggaag acgagtgcga atgcggcggt aatgccgggc aggatggacg gcagtaccaa
    11761 cgtcctgaaa ataaagaagt gtccgcgccc caatgttgcg ccgacctgtt ccatcccttt
    11821 tgggagttgt tccaaggaag tcctcagggt ggtttgcgcc atcggcaggt aaagcatgaa
    11881 ataggcaagg atgacgacga taaaggtttg gtaaacggca ggggtgtagt tgatgctgaa
    11941 ataaaccaag gatagggcga taaccaaacc ggggacggcg tgcagtaaaa acggcagcct
    12001 gtctatccaa acggttaaaa aattgcgata gcgaaccgat gcccaaacaa ggggcaaggc
    12061 acataatata gtcaaaatcg cacctaaagc cgatacgctt aaggaacgga taaaggcatc
    12121 aaatacggat acgagcgcga atgtgccgga agtgccgacc atcatccaat gtatcaatac
    12181 gccaaagggg ataataatgc ccaaagtcaa caagctgctt aaaaaaacaa tcgcgccgat
    12241 ctgaccgggc agtttgaggg ttttgacggg ataaggacgg gcaacgcctt tgccgctgtg
    12301 gtaaatcttg gctttgccgc gaaatatgct ttctccaaat acgacgatgc cgcacaccgc
    12361 cattaaaaca gcggaaagca gggcggcggt attgttgttg taggacattt cgtattcttg
    12421 gaaaatggcg gtggtaaaag tggggtagtt caaaatggat accgcgccaa attcgaccag
    12481 catatgcagg gcaatcagta acacgctgct gccgatggcg ggtttgagct gggggaggat
    12541 ggcggaaaaa aaggtttgca ggcggctttt gcccaaggac aggctgactt cttcgtaaga
    12601 caggctgatg cgtttgagtg ccgcctcgac gggcaggtag gcgagcggga acgaggacag
    12661 gctcataatc atcactgtcc cccaaaagcc ttcgacacgg aaggtcaggc tgatccaggt
    12721 gaaacagctg acaaatgcgg ggatgcacaa aggcagggtg attgccgtct gaaaaaaggt
    12781 tttgccgaag aagcggtaac gttggaacaa aagggcgcag gcaatgccca aaacaatgga
    12841 aatcagggta acgcccgcca tcatcgtcaa ggtgttggag agcaaatccc acatacgcgg
    12901 gcggaacaac agttcgacgg cgcggttgat gccgacctgc cacgaacgca tagcgacata
    12961 taaaaaaggc agggtaagcg gtagggcaat cagtaggatg aggccggtaa gccaaatggg
    13021 tattttttta ggagacatag tgttttttat cggcaaaacg ggcggacagt ataaatgtcc
    13081 acccgtttga caatccgaaa acggcttatt tcataccggc ttgctcaagc agccgggtgg
    13141 cgtgttcttt ttcggaaaca gtggtggcgg acacttgggg tgcttccaac ttggcgatgg
    13201 gttccaaatt gaaagtggat accacgtgcg gattcaaagg atattcggca cggacggcgg
    13261 tcagggcgcg ctgtccttcc ttgctggcga ggaaggcgac gaattttttc gcctcatcct
    13321 tgttttggga ggattttaac acggctgcgc cggaataggt aacgagtgcg ccgggatctc
    13381 tgtggcggac gaaattcagg cgggtgtgga cattttgtac gcctttttca cgcgcaaaag
    13441 cgtgccagta gtagttgttg atgagggcgg catcgatttc gccgttttca accgcttgaa
    13501 gggcgacgga gtttttagcg taaggcttgc cgtattcttt cagacctttg agccatttca
    13561 atgcggccgc ttcgcctttc agtttgacga tggcgacaac ctgttccaag aacgcgccgg
    13621 aagtgggggc gtaaccgatg cggtttttcc atttcggcgt ggcgtaattc aggacggatt
    13681 tttccaaatc tttttcagac agtttgcggg tgtcgtaaac gacgacgcgc gaacgtccgc
    13741 tcagtgccac ccagtctttt ttggcggcaa ccggcacgcc cttgccgcgt gtttcgttga
    13801 tggtggaggc gggcaggggc tctaggaggt tggctgcgga aagggtggcg agtgccggga
    13861 tttgttcgga atagaatacg tcggcggggc ttcggctgcc ttcttctttg atttgaccgg
    13921 caagctggtc gcctttggcg ctgttgagtt tgactttgat gccggtagcc cgggtaaagg
    13981 catctgcaac ggcttgtgcc gcttctttgt gttggccgtt gtacacggta atgtctgcca
    14041 gcgcgggggt tgcggcggtc agggctgcgg caagcagtgc gtatcggata gatgttttca
    14101 tatcgatttt ctcctaatga atgagagtgt acaccttgtt aagacataac ggggtgtagt
    14161 gtattccttc ttctttataa atgcaaataa ttatttttta aatttgttat tatccgatcc
    14221 ggttattgtt tgttctgact tgtatttttt ccgtgcatcg cgcccgtaag gcggaagcgg
    14281 cgggcaatgc gtggcggaat gtgggtaaag gcggcatttt gatttgtcgg aatgcttgag
    14341 aacccctctc tttaaaacag cgtctgaaca gggttgccgg aatagtattg ccatcccggc
    14401 agatacagtt tgtcggggtc ttgccaatat tgttcatcca gactgttcgg cagtgaggcg
    14461 gttttgttgt cgagatgttt tgttatatcc cacatttctt tcaggttttt accttccgat
    14521 tggaggtggc ggatttcttt tctcaatgcg tctgccgccc gatggatcag cattgcgctg
    14581 tgtatcgcgc cgattttttt cagaacggaa caagtctttt cggcggcggg aaaaccccaa
    14641 ttgcagacaa attgcagtat gccgccgtta ccgatatcgg cttctgtccg ccaaatcaaa
    14701 accagctcct gttcccgccc gtccatgctt tcgagtttgc cgtcatgctg ttcaaaaagt
    14761 ttgtccaccg cctgccacat catctgttcg aagcggtcgg cttgggtatc cgtatcggtc
    14821 atcgtgttct tgccttttaa aaatgccgtc tgaacatttc ttcagacggc atttgggggt
    14881 taagccaaca tttcccgcca gcgtttcact tggaagcgga cttgttcagg cgcggtgccg
    14941 cccaagtggt tgcgcgcgtt taagctgcct tcgggtgtca gcacgccgta aacgtcgtcg
    15001 gcaatcaaat cgctgaaacc ttgtaagact tcgagcggca gttcgctcaa atcgacgcca
    15061 gcttcatcgg cgtggcgcac ggcttgggcg acgacttcgt gggcatcgcg gaagggcata
    15121 ccttttttaa ccagataatc cgccaagtcg gtggcggtgg caaaaccctg catcacggcg
    15181 gcgcgcatat tgtcgggttt gacggttacg ccgcgcatca tatcggcgta aatccgcagc
    15241 gtgtcgatga gcgtgtcggc ggtgtcaaac aaaggttctt tgtcttcctg attgtctttg
    15301 ttgtacgcca agggctggga tttcatcagg gtaatcaggc cgataaggtg tccgatgacg
    15361 cggccggatt tgccgcgcac gagttcgggc acgtcgggat ttttcttctg cggcatgatg
    15421 gacgaacctg tgcagaaacg gtcggcgatg tcgataaagc cgaaacgcgg actcatccac
    15481 aaaatcaatt cttcagacag gcggctcagg tgaaccataa ccagcgaggc ggcagccgtg
    15541 aactcgacgg caaaatcgcg gtcggatacg gcatcgagcg agttttggca gatttgctcg
    15601 aaacccagta attcggcggt aatttcgcgc cgaatcgggt aggtcgtacc ggcaagggcg
    15661 gctgcgccga gcggcatacg gttgacgcgg cggcggcagt ccgccatccg ttcgttatcg
    15721 cggccgagca tttcgacgta ggcgagcata tggtgtccga agctgacggg ctgggcgact
    15781 tgcaggtggg taaagccagg cataacggtt tcggcgtttt gttccgccaa atccagcaat
    15841 gccgtctgaa ggttttgaat caggttttga ataacggtaa tctgatcgcg cagccacagg
    15901 cggatgtcgg tggcgacttg gtcgttgcgg ctgcggccgg tgtgcaggcg tttgcccgcg
    15961 tcgccgattt tgtcggtcag gcggcgttcg atgttcatgt ggacatcttc caaatcggac
    16021 gaccattcga ttttgccgct gcggatttct tcgaggattt ccgccatgcc ccgacggatg
    16081 tccgccaaat cgccttcgtc caacacgccg gtttctttca gcatttgcgc gtgggcaagc
    16141 gagccttgga tgtcccattc ggcaaggcgt cggtcgaaac cgatggaggc ggtgtattgt
    16201 ttgacgagtt cggaaacggg ttcgttgaaa cgtccggacc aggttttgtc gtgcataagg
    16261 attccttgat gtggttattc ggtacggtat ttttccaaaa ggcggcggaa gggttcgccg
    16321 gtttcggggt gtttcaggcc gtaggcgacg gtggcttcca gatagcccag tttgctgccg
    16381 cagtcgtagc gcgtgccttc aaaggggtgc gctaggacaa attcgtgatc gagcagcttg
    16441 gcgatgccgt ctgtaagctg gatttcgttg cccgcgccgc gcggcagtcc ggtcagtaag
    16501 tcgaaaatgc gcggggtaag gatgtagcgt ccaacaacgg caaggttgga gggcgcgtct
    16561 tcgggcttgg gtttttcgac aatgccgata atgcgttgga actgtttgag ctgttcggtt
    16621 tcgacgatgc cgtatgagcc ggtttgcgac ggttcgacag tttctacgcc caaaatgctg
    16681 ttgccgctgc gttcgtacac ttcgaccatt tgtttgagcg cgcctttttg ggcatcgatt
    16741 aagtcgtcag ccaaaatcac ggcgaagggt tcatcgccga tggcggcgcg ggcgcacaag
    16801 acggcgtgtc cgagccccag tgcttcggct tggcggatgt agaggcaggt aatatgaggc
    16861 ggcaggatgt tgcggacgtg ttccagaagt ttatctttat gacgcatttc caactcggtt
    16921 tcgagttcgt atgccttgtc gaaatggtct tcgatgctgc gtttgttgcg tccggtaaca
    16981 aacaccattt ccgtgcagcc ggcttccacg gcttcttcta cggcgtattg gatcagcggc
    17041 ttgtcgacga tgggcagcat ttctttcggg cttgccttgg tggcgggcag gaagcgtgtt
    17101 cccatccctg cgacggggaa aacggctttc cgtatgggtt tcattctttt tcctttgtat
    17161 tgttttgatg tttaaagggc gagtttgcgt aagagttcgg caagtgcctg cgcgcggtgg
    17221 ctttcgcggt ttttgacctc cgaatccaat tcggcggcgg ttttgccgtg tccgggcaga
    17281 taaaaatacg ggtcgtaacc gaaaccgttt tcaccggcgg gaacgccgtt ccattgtccg
    17341 tgccatacgc cttcggcaat aatcggacgc gggtcgtctt tatggcggac aaaaaccaat
    17401 acgcagacgt agcaacagct tttgtcggct ttgccggcaa gttcggcggc aagtttcagg
    17461 ttgttggcgg tatcggattt gggattgctg ccggcgtaac gtgcggaatg tatgcccgga
    17521 gcaccgttta aggcggcggc acagatgccg ctgtcgtcgg cgagtgcggg cagcccgctg
    17581 tgtccggcgg cgtgccgggc ttttgccagc gcattttcaa caaaggtgga atagggttcg
    17641 gggcattcgg gtatgctgaa ctcggattgc ggcaatacgg taatgccgta tggttcgaat
    17701 aggttgccga attctttgag tttgcctgca ttgccgcttg ccaaaacgat tttttccggt
    17761 ttttcagaca tagcggtttt cctttgcggc ggattgggcg gcgcgtaggg atttgtgccg
    17821 caggtagagg gcgaggctgc cgatttgtcc gaacagtgcg ccgaatgcga aaagaaagga
    17881 ggcgacggcg aaggctttgc tgccgacggt cagcagataa gcacccaaga ggacgagcag
    17941 cataaatgcc agtgtgaaga gggcaacaga caacagatag atttttcggc ggttcatggc
    18001 gttcggtcgg aaacggtatg ttcggattat agccgattgg gacggtattc cctagagctt
    18061 ggaaaaatgc cgtctgaaac ggcgttcaga cggcatggcg ggcgttatgc ctgtttgttc
    18121 caacgttcga tggattcttt gatgactttt ttcgcttctt ccgcatcgcc ccacgattcg
    18181 actttggtcg tacctgcttt tttcaggtct ttgtaatggt tgaagtggaa ctcgatttgt
    18241 ttgatgagct gttgcggcaa atcggacaaa gttttgtagg cgttgccgtt gttgcggtcg
    18301 tcggcaggaa cgcagacgat tttgtcgtct acttcgccgt cgtcaacgaa tttcatcacg
    18361 ccgataacgc gcgcttccaa gaatacgccg gttgccaaag gttgttcggt aacgagcagc
    18421 acgtccaatt cgtcgccgtc ttcgtccaaa gtttggggaa tgaagccgta gttggtcggt
    18481 ttggcgaaga tggcgggttc gacgcggtcg agttggaatg cggcgagttt gcggttccac
    18541 tcgattttgt ggttgctgcc ggcggggatt tcgttgacga cgttgatgat gccgccgtcc
    18601 acatcgccgg gggtcaggat ttggttgaag tctgccattt ggtttccttt gtttgggaaa
    18661 gtttgaagtt tgaaagtata gcacaaacgt ccggctgaaa atgcgcccga tgccgtctga
    18721 aagggtgtac gggcgcgtgt taccgtttgc ccaaaaacct gcccagttcc agaatcgcgc
    18781 gcctgttgga cggggaaaac actttttccg ccgcttcttc caagccgaac cagccgtagg
    18841 agacgtgttc ttcgggttgc agggcgatgg gcgtatcacg cgggatttcg gcagagaaga
    18901 ggtgttcgcg gttttcaaac acgccttttg gatagcggtg ccgccagtgg tggtagattt
    18961 cgtaaaccgt gctgtcgtgc cagtcttgaa gctgcccgtc cgccagcagg atgccggttt
    19021 cttcccaaac ttcgcgcctt gccgtttgtg cgacggtttc gcccggttcg aggctgccgg
    19081 ttaccgactg ccaaaatcct ttcggatgcg tgcgttcgat gagcaggatg ccgccgtccc
    19141 cgctataaag gacgaccagt gcggaaacgg ggtatttgag cggttttgcc atcggcatct
    19201 ttcggcgggc tgcggtaatg aaggggcgga ttatagcaaa cgccgcacgt tatggcgttt
    19261 atccttttcc gtatcctttt ttctgcacgg atgggacgcg ccggtgtttg ccggtaaatt
    19321 ttccgttgtg tcaaaaagat aagggcggtt gtgattttaa tgcttgccaa agcgtcgggc
    19381 ggaaactata atccgaaact tatcgagtcg gagtgtggcg cagtctggta gcgcacttgc
    19441 atggggtgca aggggtcgaa ggttcgaatc ctttcactcc gaccaaaaat tccgaaagcc
    19501 gctttcaaaa gcggcttttt tgccgtccgt atgattatga tgtagagtac gcggcgacag
    19561 acattcaaat gccgtctgaa aaccgttcag atggcatctc tttatcttag tttcattccg
    19621 taccatctta aggaacatca aattgggcat ttcccgcaaa atatccctta ttctgtccat
    19681 actggcagtg tgcctgccga tgcatgcaca cgcctcagat ttggcaaacg attcttttat
    19741 ccggcaggtt ctcgaccgtc agcatttcga acccgacggg aaataccacc tattcggcag
    19801 caggggggaa cttgccgagc gcagcggcca tatcggattg ggaaaaatac aaagccatca
    19861 gttgggcaac ctgatgattc aacaggcggc cattaaagga aatatcggct acattgtccg
    19921 cttttccgat cacgggcacg aagtccattc ccccttcgac aaccatgcct cacattccga
    19981 ttctgatgaa gccggtagtc ccgttgacgg atttagcctt taccgcatcc attgggacgg
    20041 atacgaacac catcccgccg acggctatga cgggccacag ggcggcggct atcccgctcc
    20101 caaaggcgcg agggatatat acagctacga cataaaaggc gttgcccaaa atatccgcct
    20161 caacctgacc gacaaccgca gcaccggaca acggcttgcc gaccgtttcc acaatgccgg
    20221 tagtatgctg acgcaaggag taggcgacgg attcaaacgc gccacccgat acagccccga
    20281 gctggacaga tcgggcaatg ccgccgaagc cttcaacggc actgcagata tcgttaaaaa
    20341 catcatcggc gcggcaggag aaattgtcgg cgcaggcgat gccgtgcagg gcataagcga
    20401 aggctcaaac attgctgtca tgcacggctt gggtctgctt tccaccgaaa acaagatggc
    20461 gcgcatcaac gatttggcag atatggcgca actcaaagac tatgccgcag cagccatccg
    20521 cgattgggca gtccaaaacc ccaatgccgc acaaggcata gaagccgtca gcaatatctt
    20581 tatggcagcc atccccatca aagggattgg agctgttcgg ggaaaatacg gcttgggcgg
    20641 catcacggca catcctatca agcggtcgca gatgggcgcg atcgcattgc cgaaagggaa
    20701 atccgccgtc agcgacaatt ttgccgatgc ggcatacgcc aaatacccgt ccccttacca
    20761 ttcccgaaat atccgttcaa acttggagca gcgttacggc aaagaaaaca tcacctcctc
    20821 aaccgtgccg ccgtcaaacg gcaaaaatgt caaactggca gaccaacgcc acccgaagac
    20881 aggcgtaccg tttgacggta aagggtttcc gaattttgag aagcacgtga aatatgatac
    20941 gaagctcgat attcaagaat tatcgggggg cggtatacct aaggctaagc ctgtgtctga
    21001 tgcaaaaccg agatgggagg ttgataggaa gcttaataaa ttgacaactc gtgagcaggt
    21061 ggagaaaaat gttcaggaaa taaggaacgg taataaaaac agtaacttta gccaacatgc
    21121 tcaactagag agggaaatta ataaactaaa atctgccgat gaaattaatt ttgcagatgg
    21181 aatgggaaaa tttaccgata gcatgaatga caaggctttt agtaggcttg tgaaatcagt
    21241 taaagagaat ggcttcacaa atccagttgt ggagtacgtt gaaataaatg gaaaagcata
    21301 tatcgtaaga ggaaataata gggtttttgc tgcagaatac cttggcagga tacatgaatt
    21361 aaaatttaaa aaagttgact ttcctgttcc taatactagt tggaaaaatc ctactgatgt
    21421 cttgaatgaa tcaggtaatg ttaagagacc tcgttatagg agtaaataaa aatggcaatt
    21481 tggaattatc ggtactacct tatcccatca gctgctatca gaaataaatt taatgcaaat
    21541 aaagatatca tacttgatga gtatcgatct aatggttttc agaattttaa tgagaataaa
    21601 agttttgaaa attactttat cgataatgat gttatattat tatcaataat aaatgaagca
    21661 aaaaaacagc ttaaattgaa agaatcttgg gataaagacg caatcatgtt ttgtgataat
    21721 tttggtaata gtcttaccgt ttggccagat gatatagagt gcgaacttga tttaagattt
    21781 gattatacta aatttattca gaaaaccatt gattgggcaa taaaatataa ttgtctactt
    21841 gtaatagaaa aaacaggaaa tgtagtttcc cctaatataa ataatctgat gtatgaaata
    21901 aaagcatatt tggaaagcaa gccgtggccc atatgaaacc taaactcaac aagtaggatg
    21961 tgtgcggaac gcacgtatgc ggttctcaag gtttgagcta agaggccgtc tgaaaacaga
    22021 aaaactgttt cagacgacct ttcttttaac cagttgccac agcaaccgga caaaagcagc
    22081 ctacctccac atccatatag gcaatacagg ggagatattt tgtaaattct acgaatattt
    22141 tacctgctaa acagggtagg atatggtatg aagcgaacat tggcttaata aacactatgt
    22201 caagatcgaa tcaggctggt actagattgt tgtattccaa ttatggattg ctatatataa
    22261 caactgatca ttatatctct gcaacacggt ttgtagcttg gaaataggag tataacttat
    22321 gcaattagag attatcggta gtaaaattta tacggaacaa gattttcata atcaaatttc
    22381 aaaaatattt tctatacaag attattatgg gaacaatctt gatgctttat gggatttatt
    22441 aagcacaaat gtagaacgac cgattacttt ggtatggaaa gatgctatgt tctcaaaaaa
    22501 tcaattagaa aatatattta ttgaaatcgt aaatgttcta gaaagagtta agaaacaaga
    22561 tgaggattat ggattcgaag aaaaatttaa ttatatttta gagtaagtaa accctaatta
    22621 cattacgtac acaggcttaa aactccccag agccaattaa gcaagccgta acccatataa
    22681 aacttaaact caacaagtag catgtgtgcg gaacgtacgc atgcggttct taaagtttga
    22741 gctaagaggc cgtctaaaaa cagaaaaacc gtttcagacg gtctttgttt aacgccaccg
    22801 atccagcggg ttacaaagcg cagtcaatgc cgctgcgcct tatgcctccg aagcaatagg
    22861 cagaacattt ggacacggtg aaaacaaaaa cgaaaccgcc caagccgtcg gacatttcct
    22921 tttaggagca gctattgccc gcgtaaacgg tggtaatttt gctgccggcg gctcggcagc
    22981 agttgcagct gaaaaggcgg cggaacatct tgcccaacag tataacgacg gtaaaaccgc
    23041 aatcgatccg caaacaggcg agttcaatgc caacctgctg ccggaacata tcaaagagga
    23101 aatcaaatca aagagcgggg tgattgcatc gctgacgggc gcggccgtgg gcggcacgcc
    23161 ggtagatgcg caaaccggag gtgcggtcgg acagaatgcg gtggaaaaca acctctatct
    23221 gacatcggaa gccttaaaga aggacaagca gacagctcgt aaaatttatt ccgtcataaa
    23281 agagcaagtc aagcatgaat gcagttccac aggaagaatt accgaatgtc gtcaaaatat
    23341 aggacgcatt atcgaattta cccaagacaa acgctttgac agtaggttta aggacttaaa
    23401 aaaagaatcc ttatattacc taaataaaca tcctgattta gtagcctctt atttgaaggc
    23461 tgaatacgaa aagctggata gggaagacaa aagtatcctg caccgctaca tctcacccgg
    23521 ggctgaaatc gtttcgggca gtttgggggt tgttctttca ggagtagccg gaggcggatc
    23581 ttgtgccgag actttcggct taggctgtgc cgccgctttg gttggtgtaa cgtcttccta
    23641 cgatcatgtc attactggga cgaaaaactt cggaaaaaaa gccagcgagc aacgaccgac
    23701 gattgcggtt caggccttga agcagttggg gctgtcggag caggctgcgg aatatgttca
    23761 gttctctata gatttgttca gtgtgggtaa atcggggggc ggtataccta aggctaagcc
    23821 tgtgtttgat gcgaaaccga gatgggaggt tgataggaag cttaataaat tgacaactcg
    23881 tgagcaggtg gagaaaaatg ttcaggaaac gagaagaagg agtcagagta gtcagtttaa
    23941 agcccatgcg caacgagaat gggaaaataa aacagggtta gat
//
LOCUS       DAWGNT010000013        23633 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.013, whole genome shotgun sequence.
ACCESSION   DAWGNT010000013 DAWGNT010000000
VERSION     DAWGNT010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 23633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23633
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.013"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(65..904)
                     /locus_tag="WHR98_000350"
     CDS             complement(65..904)
                     /locus_tag="WHR98_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5 family protein"
                     /protein_id="HEZ2307084.1"
                     /translation="MKQLRDNKAQGSALFTLVSGIVIVIAVLYFLIKLAGSGSFGDVD
                     ATTEAATQTRIQPVGQLTMGDGIPVGERQGEQIFGKICIQCHAADSNVPNAPKLEHNG
                     DWAPRIAQGFDTLFQHALNGFNAMPAKGGAADLTDQELKRAITYMANKSGGSFPNPDE
                     AAPADNAASGTASAPADSAAPAEAKAEDKGAAAPAVGVDGKKVFEATCQVCHGGSIPG
                     IPGIGKKDDWAPRIKKGKETLHKHALEGFNAMPAKGGNAGLSDDEVKAAVDYMANQSG
                     AKF"
     gene            1189..1264
                     /locus_tag="WHR98_000351"
     tRNA            1189..1264
                     /locus_tag="WHR98_000351"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1222..1224,aa:Arg,seq:ccg)
     gene            complement(1329..2522)
                     /locus_tag="WHR98_000352"
     CDS             complement(1329..2522)
                     /locus_tag="WHR98_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HEZ2307085.1"
                     /translation="MYRHIEYYPGDPILSLVETFKNDPRPEKVNLSIGIYFDDEGKMP
                     VLESVSRAETARAVTPAPSPYLPMEGLNTYRSAVQHLLFGKDNRALAQGRIVTVQTLG
                     GSGALKVGADFLHRWFPEARAYVSDPTWDNHRGIFEGAGFEVGTYPYYDPAAVGVKFD
                     EMTAFFNTLPENSVLILHPCCHNPTGVDMSEQQWDEVLHIIKRRKLIPFMDIAYQGFG
                     GDLDSDAYAVRKAVEMELPLFVSNSFSKNLSLYGERVGGLSVVCPNKEEADLVFGQLK
                     FTVRRIYSSPPAHGAYIAADVMNSPELYVLWQNEVYMMRDRIRAMRQKLYDVLTAQIP
                     DRDFTYFIKQRGMFGYTGLSVGQVRRLRDEFAVYLLDSGRMCVAGLNTSNTDYVARAF
                     AEVLK"
     gene            complement(2528..3631)
                     /gene="trmA"
                     /locus_tag="WHR98_000353"
     CDS             complement(2528..3631)
                     /gene="trmA"
                     /locus_tag="WHR98_000353"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEZ2307086.1"
                     /translation="MSDYTQQLQDKKDRLKTLFAGLDVPEWEVYESPDKHYRMRAEFR
                     IWHEGGEMFYAMFEKGQKAGGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRW
                     YAVEFLSTLGGEMLVTMIYHKRLDNEWMQAAQALQQQLDISVIGRSRGQKIVLKQDYV
                     TETLKVGNRDFRYRQIEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTL
                     PLSRYFRQVLATEISKTSVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFTRLK
                     EGGIALTDYAFSTIFIDPPRAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETH
                     TVERAALFDQFPFTHHIESGVLLKKKILGKSKR"
     gene            3778..4878
                     /gene="aroC"
                     /locus_tag="WHR98_000354"
     CDS             3778..4878
                     /gene="aroC"
                     /locus_tag="WHR98_000354"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEZ2307087.1"
                     /translation="MAGNTFGQLFTVTTFGESHGAGLGCIIDGCPPGLALIESDIQAD
                     LDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPIALLIRNTDQRSKDYGNIATSF
                     RPGHADYTYWHKYGTRDYRGGGRSSARETAARVAAGAVAKKWLKEKFGTEITAYVTQV
                     GEKEIRFEGCEHISQNPFFAANHSQIAELENYMDSVRKSLDSVGAKLHIEAANVPVGL
                     GEPVFDRLDAEIAYAMMGINAVKGVEIGAGFDSVTQRGSEHGDELTPQGFLSNHSGGI
                     LGGISTGQDICVNIAIKPTSSIATPRRSIDINGNPIELATHGRHDPCVGLRAAPIAEA
                     MLALVLIDHALRHRAQNADVAVDTPDIARSDK"
     gene            4969..5394
                     /locus_tag="WHR98_000355"
     CDS             4969..5394
                     /locus_tag="WHR98_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant transport activator ProQ"
                     /protein_id="HEZ2307088.1"
                     /translation="MTQETALGAALKSAVQTMSKKKQTEMIADHIYGKYDVFKRFKPL
                     ALGIDQDLIAALPQYDAALIARVLANHCRRPRYLKALARGGKRFDLNNRFKGEVTPEE
                     QAIAQNHPFVQQALQQQSAQAAAETPSVEAEAAESSAAE"
     gene            complement(5468..7453)
                     /gene="parE"
                     /locus_tag="WHR98_000356"
     CDS             complement(5468..7453)
                     /gene="parE"
                     /locus_tag="WHR98_000356"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HEZ2307089.1"
                     /translation="MAKNNQYSESSITVLKGLEPVKERPGMYTRTDSPTHICQEVIDN
                     AADEALGGFATAIDVQIHEDGSLSVRDNGRGIPVGLHPEEGVPVVELVFTRLHAGGKF
                     NKKDGGSAYAFSGGLHGVGVSVTNALSTRLEVTVKREGKIHRIVFAGGDVVEPLAQVG
                     KCAVKDSGTEVRVWPDGKYFESPNYSIPELERLLRAKAVLLPGVRVSLTRPVKGEDEA
                     HTQTWHYPDGLKSYLTDLIADAQEAVPIFSCENYISDGHNGDFSIGEGAAFALTWLEE
                     GSCANESYVNLIPTPLGGTHEAGLKQAVFNAVSNFINLHNLLPRGVKVQSDDVFGKTA
                     FVLSARVLDPQFQGQTKDKLTNRDALKLVATVSGDPLELWLNQNVDFGKKIAELAIRQ
                     AQARMRSVKKIEKKKGSGVAVLPGKLTDCESEDIRENELFLVEGDSAGGSAKLARDKA
                     TQAILPLRGKVLNSFEVHPDQLFGNAEIHDISVAIGVDPHGINDHPDLSGLRYGKIAI
                     LSDADVDGSHIQVLLLTLFYRHFPKLVADGHIYVAQPPLFRVDVNAQGKSKPARKFYA
                     LDQNELDGILERLQKEGVKETAYSISRFKGLGEMNPDQLKDTTMHPDTRRLLQVQIPE
                     GADDETRDIFVKLMGKGEAAARRAWMEREGDTAELDI"
     gene            complement(7520..8044)
                     /locus_tag="WHR98_000357"
     CDS             complement(7520..8044)
                     /locus_tag="WHR98_000357"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEZ2307090.1"
                     /translation="MLDREGYRPNVGIILTNNRDEVFWGKRVREHSWQFPQGGIKPGE
                     SPETAMYRELYEEVGLLSQHVKIVGRTRDWLRYDVPNNWVRREWRGSYRGQKQIWYLL
                     RLTGRDCDVNLRATRHPEFDGWRWHQYWAPVDEVIDFKRDVYLGALKELSSRFLRGME
                     SYEDFAARQLSGNR"
     gene            8209..9504
                     /gene="serS"
                     /locus_tag="WHR98_000358"
     CDS             8209..9504
                     /gene="serS"
                     /locus_tag="WHR98_000358"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEZ2307091.1"
                     /translation="MLDIQLLRSNTAAVAERLARRGYDFDTARFDALEERRKSVQVKT
                     EELQASRNSISKQIGALKGQGKHEEAQAAMDQVAQIKTDLEQAAADLEAVQKELDAWL
                     LSIPNLPHEDVPFGKDETENVEVRKVGTPREFDFEIKDHVDLGEPLGLDFEGGAKLSG
                     ARFTVMRGQIARLHRALAQFMLDTHTLQHGYTEHYTPYIVDDTTLQGTGQLPKFAEDL
                     FHVTRGGDETKTTQYLIPTAEVTLTNTVADSIIPSEQLPLKLTAHSPCFRSEAGSYGK
                     DTRGLIRQHQFDKVEMVQIVHPEKSYEALEEMVGHAENILKALELPYRVITLCTGDMG
                     FGATKTYDLEVWVPAQNTYREISSCSNCEDFQARRMKARFKDENGKNRLVHTLNGSGL
                     AVGRTLVAVLENHQNADGSINIPAALQPYMGGVAKLEVK"
     gene            complement(9582..10580)
                     /locus_tag="WHR98_000359"
     CDS             complement(9582..10580)
                     /locus_tag="WHR98_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HEZ2307092.1"
                     /translation="MKIAIYGTKSYDREHFTRANRHFGFELEFFDFMLDAKTAKMAEG
                     AEAVCIFVNDDGSRPVLEKLAQIGVKTVALRCAGFNNVDLKAAEELGLKVVRVPAYSP
                     ESVAEHTVGLMLTLNRRIHKAYQRTRDANFSLEGLTGFNMYGKTAGVIGTGKIGIATM
                     RILKGFGMNLLAHDPFCNPEAEKIGGRYVDLDELYAQSDIITLHCPATPENHYMLNEA
                     AFDKMKDGVMIINTSRGGLIDSAAAIEALKRRKIGALGMDVYENERELFFEDKSNDVI
                     TDDVFRRLSSCHNVLFTGHQAFLTEEALGNISEVTLSNIREVGQTGDCGNAVRADG"
     gene            complement(10705..11781)
                     /gene="prfA"
                     /locus_tag="WHR98_000360"
     CDS             complement(10705..11781)
                     /gene="prfA"
                     /locus_tag="WHR98_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003790927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEZ2307093.1"
                     /translation="MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAE
                     LTPVVEVFQNYRLAQSDLADAEEMLSDPEMKDFAAEEIEAAKAKIGELDTELQKLLLP
                     KDADDDKNIFIEIRAGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSVNESELGGYK
                     EVIARIVGLGAYSRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELN
                     PADLRIDTFRASGAGGQHINKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAA
                     RLNDAQKREAQAKEAAERKSLIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMD
                     GDLAEITDALIAEHQAELLAAMGD"
     gene            complement(11871..12641)
                     /locus_tag="WHR98_000361"
     CDS             complement(11871..12641)
                     /locus_tag="WHR98_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEZ2307094.1"
                     /translation="MRLTDTHCHLADSVLRGNLAQVLAEARQAGVWRFIVPATRPQDW
                     QSVAELSEMPSEHGQIRIALGIHPWFSDGIAERDCVRLETMLARYPQAWVGEIGLDFY
                     DKTQTPPQRERQIQVFVRQLAIAQTLRRRVIIHNLKATADIAAAVKQTGFAQGGIVHA
                     FSGSAEEARVLTKLGFKIGIGSLLLNPNARKVRDTLKALNDGDFVLETDSPFMLKKEI
                     NTPANILRIAEIAAQIRGTGAAEIAAITERNADSLLRP"
     gene            complement(12644..13636)
                     /locus_tag="WHR98_000362"
     CDS             complement(12644..13636)
                     /locus_tag="WHR98_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEZ2307095.1"
                     /translation="MKQKIFVLYTGGTIGMTQSSEGLRPDTALVGQALAPFSNGMDFD
                     WHVCGTLIDSSAVQLQNWCAWLDIIATALPQYDGVLVLHGTDTLAYTANLFALALQGL
                     DKPIVLTGSQWPYNAVGSDAPRNLATAVAAFPLGLKQTLIAFDGKLYPAVGSSKVSTE
                     TAAGFDNPHFGALAEWDETQGWHNVRIPNQDTADVSDGLKIRYPDPQAKIAVRTLIPG
                     FAVQELADGLGQLPAHALILQSYGHGNTPADEGFIRAVQDFTQQGRLLLNISQVRQGR
                     TAAVYAQGNAFRNSGIINGGKCNLETATALMTLAVSEGWGADEVKHELQRLGLV"
     gene            complement(13703..14386)
                     /locus_tag="WHR98_000363"
     CDS             complement(13703..14386)
                     /locus_tag="WHR98_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEZ2307096.1"
                     /translation="MFALLEAFFVEYGYAAVFFVLVICGFGVPIPEDLTLVTGGVISG
                     MGYTNPHIMFAVGMLGVLVGDGIMFAAGRIWGQKILKFKPIARIMTPKRYAQVQEKFD
                     KYGNWVLFVARFLPGLRTAVFVTAGISRKVSYLRFLIMDGLAALISVPVWIYLGEYGA
                     HNIDWLMAKMHSLQSGIFIALGVLAAALAWFWWRKRRHYQLYRAQLSEKRAKRKAEKA
                     AKKAAQKQQ"
     gene            complement(14575..15909)
                     /gene="glmM"
                     /locus_tag="WHR98_000364"
     CDS             complement(14575..15909)
                     /gene="glmM"
                     /locus_tag="WHR98_000364"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEZ2307097.1"
                     /translation="MAKKYFGTDGVRGEVGQFPITPDFVLKLGYAAGQVLVQHDTDQK
                     PTVLIGKDTRISGYMLEAALVAGFTAAGVNVVQTGPLPTPGVAYLTRALRLSAGVMIS
                     ASHNAYSDNGIKFFAEGGVKLSDEVELEIEAKIDGEMKTQPSARLGRARRINGADDRY
                     IEFCKSTFPTHSDLRGLKLVVDAANGAAYSVAPKVFHELGAQVVSIGDEPNGYNINEK
                     CGATYTKTLQAAVLQHEANYGIALDGDGDRLMMVDKNGKVYDGDSLIYVIAKARAREG
                     INIGGVVGTVMTNMAMEIALKEQGVDFCRAKVGDRYVLEQLNQRGWLVGGEASGHILC
                     MDKHNTGDGIISALQVLAALQTLNQDLAAVCADWQPYPQTMINVRIGKGQNWQEASKD
                     VLAEVEKELEGKGRVVLRASGTEPVVRVMVEARQADWAREGAERIAAAIGGI"
     gene            complement(16039..16890)
                     /gene="folP"
                     /locus_tag="WHR98_000365"
     CDS             complement(16039..16890)
                     /gene="folP"
                     /locus_tag="WHR98_000365"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEZ2307098.1"
                     /translation="MARHVWQAGRFEIGLDKPKIMGIVNLTPDSFSDGGAYSQNARTA
                     LAHAERLLKEGADILDIGGESTRPGADYVSSEEEWARVEPVLAEVAGWGVPVSLDTRR
                     TVIMEKALALGGIDIINDVAALTDEGAVELLARQTDTGICLMHMRGLPENMQINPKYQ
                     DVVGEVARYLKARAAECIAAGIAPQRITLDPGFGFGKTLQHNIALMRHLPELMAETGF
                     PLLIGVSRKRMVGELTGETDAAARVHGSVAAALASVARGVQIVRVHDVKATADALKAW
                     EALGINL"
     gene            complement(17030..17923)
                     /locus_tag="WHR98_000366"
     CDS             complement(17030..17923)
                     /locus_tag="WHR98_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEZ2307099.1"
                     /translation="MIIVMSRRAAEADIAGVVAFIRSRGLREHISHGDERTVIGAIGD
                     DRVLSVREVQTLPEVEKAVRILDTWKTVSRENRAEDSRVAAKGVAFGGGETVRIAAEP
                     SVWRNADAVFLDPFFTSANLYDTSSADERRGRCRRLAEQTASAHGAGKPVLVRVRNVR
                     HVEAALNAGADILYLGGGLMSDLAVLNEAGSLNIPLVLCKDKHHSAEDWLNAAEYVVS
                     RGNRHLILGESGVLSHTKDHPYRLDVESIVKVRQISHLPVIANITGLWNRDMPQEILY
                     GLAKAAGACGIVGTCFEKSGG"
     gene            18014..20128
                     /locus_tag="WHR98_000367"
     CDS             18014..20128
                     /locus_tag="WHR98_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HEZ2307100.1"
                     /translation="MDLLSVFHKYRLKYVVAVLTILLLAAIGLHASVYRIFTPENIRS
                     RLQQSIAHTHRKISFDADIQRRLLPRPTVILKNLTITEPGGDRTAVSVQETKIGLSWK
                     NLWSDQIQIEKWVVSSAELALTRDGKGVWNIQDLIDSQKRQASVNRIIVENSTVRLNF
                     LQEQLILKEINLNLQSPDSSGQPFESSGILVWGKLSVPWKSRGLFLSDGIGTPKISPF
                     HFEASTSLDGHGITISTTGSPSVRFNAGGADAAGLGLRADTSFRNLHLTAQIPALALR
                     NNSIKIETVNGAFTAGGEYARWDGSFKLDKANLHSGIANIGNAEISGSFKTPRHQTNF
                     SLNSPLVWTENKGLDAPRLYVSTLQDTVNRLPQPRFISRLDGSLSVPNLQNWNAELNG
                     TFDRQTVAAKFRYTHEDAPHLEAAVALQKLNLTPYLDDVRQQNGKIFPDTLAKLSGDI
                     EAHLKIGKVQLPGLQLDDMETYLHADKGHIALSRFKSGLYGGHTEGGISIANTRPATY
                     RLQQNASNIQIQPLLQDLFGFHSFSGNGDAVIDLTAGGETRKELIRSLQGSLSLNISN
                     GAWHGIDMDNILKNGISGKTADNAVPSTPFHRFTLNSEISDGISRHIDTELFSDSLYV
                     TSNGYTNLDTQELSEDVLIRNAVHPKNKPIPLKITGTVDKPSITVDYGRLTGGINSRK
                     EKQKILEDTLLEQWQWLKPKEP"
     gene            complement(20193..21671)
                     /gene="ubiD"
                     /locus_tag="WHR98_000368"
     CDS             complement(20193..21671)
                     /gene="ubiD"
                     /locus_tag="WHR98_000368"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HEZ2307101.1"
                     /translation="MKYKDLRDFIAMLEQQGKLKRVAHPVSPHLEMTEIADRVLRAEG
                     PALLFENPIKPDGTRYDYPVLANLFGTPERVAMGMGADSVSKLREIGQTLAYLKEPEP
                     PKGIKDAFSKLPLLKDIWSMAPNVVKNAPCQEIVWEGENVDLYKLPIQHCWPEDVAPL
                     VTWGLTVTRGPHKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEFRKLNPDTPYP
                     VAVVLGCDPATILGAVTPVPDTLSEYQFAGLLRGSRTELVKCIGNDLQVPARAEIVLE
                     GVIHPNETALEGPYGDHTGYYNEQDHFPVFTVERITMRENPIYHSTYTGKPPDEPAVL
                     GVALNEVFVPLLQKQFPEITDFYLPPEGCSYRMAVVSMKKQYAGHAKRVMMGCWSFLR
                     QFMYTKFIIVVDDDVNVRDWKEVIWAVTTRMDPVRDTVLVENTPIDYLDFASPVSGLG
                     GKMGLDATNKWPGETDREWGRVIKKDPAVTAKIDGIWGELGL"
     gene            complement(21691..22206)
                     /locus_tag="WHR98_000369"
     CDS             complement(21691..22206)
                     /locus_tag="WHR98_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2199 domain-containing protein"
                     /protein_id="HEZ2307102.1"
                     /translation="MYTCTSCGEKHEDMPAIGFTAPDPYNQLSEEERIAYQAECDSDF
                     CIIRYPDQTDRFIRAVLPIPIIGHEETLEYGVWVSVSEKSFNDYQSRFYDNLENAVYF
                     GMICNQLPPYETDTFGLHCNVVTQPDGQRPLLQLHQGGEHPLVRDFYHGIEYAEAQAR
                     IGAVSESDCSG"
     gene            complement(22213..22713)
                     /locus_tag="WHR98_000370"
     CDS             complement(22213..22713)
                     /locus_tag="WHR98_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003798052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307103.1"
                     /translation="MVFVNPLYYGREAGWFVWLAAAMCGLWLLRALTAKLPQQRYAAL
                     FITLFFAAVLVFGRHDSMYWYPVLVNLMMLAVFGGSLFAGQTVIEKLARLQQPDLPEK
                     AVRYTRRVTQVWCVFFIANGTLAALLARLGRYDWWAVYTGVIAYVLMGMPFAGEWLYR
                     KLVLKV"
     gene            complement(22945..23514)
                     /locus_tag="WHR98_000371"
                     /pseudo
     CDS             complement(22945..23514)
                     /locus_tag="WHR98_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691695.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase chain length factor"
     gene            23554..>23633
                     /locus_tag="WHR98_000372"
     CDS             23554..>23633
                     /locus_tag="WHR98_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HEZ2307104.1"
                     /translation="MLPSKYEDNTLQIKEKSTERTAPFFVL"
BASE COUNT         5323 a         6798 c         6186 g         5326 t
ORIGIN      
        1 tcccataaaa aaacggagca gatacctgcc ccgtttttat ttaatccgaa attttaatct
       61 aaatttagaa ttttgcaccg gattggtttg ccatatagtc aacagccgct ttgacttcgt
      121 catcgctcaa acctgcattg ccgcctttgg caggcatcgc gttaaagcct tcaagggcgt
      181 gtttgtgcaa ggtttctttg ccttttttga tacgcggtgc ccaatcgtct tttttgccta
      241 tgccgggaat accgggaatc gaaccgccgt ggcacacctg acaggttgct tcgaagactt
      301 ttttaccgtc aacgccgacc gcaggggctg ccgcaccctt gtcttctgcc ttcgcttctg
      361 ccggagctgc actatcggca ggagcagaag ctgttcctga agcggcattg tcggcaggcg
      421 cagcctcatc aggattcggg aaagaaccgc cgcttttgtt cgccatgtaa gtaatcgccc
      481 gtttgagttc ctgatcggtc aggtctgccg caccgccttt ggcaggcatg gcgttaaagc
      541 cgttcagcgc gtgttggaac aaggtatcga agccttgcgc gatacgcggc gcccaatcgc
      601 cgttgtgttc cagtttcgga gcgttcggca cattgctgtc cgccgcgtgg cattggatac
      661 agattttgcc gaaaatctgt tcgccttggc gttcgccgac ggggatgccg tcgcccatcg
      721 tcaattgtcc gacaggctgg atacgggtct gcgttgctgc ttccgtagtg gcatcgacat
      781 cgccgaacga gccgctgccc gccagcttaa tcaggaaata aaggactgca ataacaataa
      841 cgataccgct cacaagggta aacagtgcag agccttgggc tttattgtcg cggagttgtt
      901 tcatttggta ggcctcgccg tcaggttagg ttgtgctgta aattatagtt tggtgtgtta
      961 aacgcagtta acaatatttt gctggattat actgaattca cagggtcttt ccaatcgcta
     1021 tcattgaaaa tatgaaaaaa tttgccaacg gtatctgtat aaaacaaata atcctttgaa
     1081 aataattgtt tatcctcaag aaaactctcc ttatgccgcc atacgccgcc tgccggcgca
     1141 agataacctt tgccaatttg cagaatttac gttaacctta cgttttacgc acccatagct
     1201 cagttggaag agtgtcagtt tccgaagctg gaggtcacag gttcgatccc tgttgggtgc
     1261 gccaattata aagaggccgt ctgaaagata aatatttttc agacggtctt ttgacttact
     1321 tcaaactctt atttcaagac ttccgcaaat gcgcgggcaa catagtcggt attcgacgta
     1381 ttcagtccgg cgacgcacat cctgccggaa tccagcaggt aaacggcaaa ttcgtcgcgc
     1441 agcctgcgga cttgccccac gctcaacccc gtgtagccga acattccgcg ctgtttgatg
     1501 aaataagtga aatcgcgatc ggggatttgc gcagttaaga catcataaag tttctgccgc
     1561 atggcgcgga tgcggtcgcg catcatataa acttcgtttt gccacaagac gtaaagttcg
     1621 gggctgttca tcacgtcggc ggcgatatac gcgccgtgcg cgggcgggct ggagtagatg
     1681 cggcggacag tgaatttgag ctgtccgaac accaaatccg cttcttcctt attcgggcaa
     1741 accacgctta agccgccgac gcgctcgccg tagagcgaca ggtttttcga gaaggaattg
     1801 ctgacgaaca agggcaattc catttccacc gctttgcgga cggcgtaggc atcgctgtcc
     1861 aaatcgccgc cgaatccttg gtaggcaatg tccataaacg gaatcagttt gcgccttttg
     1921 atgatgtgca acacttcgtc ccattgttgt tccgacatat ccacgccggt cgggttgtgg
     1981 cagcagggat ggaggatcag gacgctgttt tcgggcaggg tgttgaaaaa cgcggtcatt
     2041 tcgtcgaatt tcacgccgac ggcagcaggg tcgtaatatg ggtaagtgcc gacctcgaaa
     2101 cctgcgcctt caaaaatgcc gcgatggttg tcccaagtcg ggtcgctgac gtaggcgcgc
     2161 gcttcgggaa accagcggtg caggaaatcc gctccgactt tgagcgcgcc cgagccgccc
     2221 aaagtttgca cggtaacgat gcgcccttgc gcaagcgcgc ggttgtcttt gccgaacaat
     2281 aaatgctgca ccgcgctgcg gtaagtgttc aaaccttcca tcggcagata gggcgacggc
     2341 gcaggcgtga cggcgcgggc ggtttcggct ctgctcacgg attccaatac gggcatcttg
     2401 ccttcgtcgt cgaaataaat gcctatgctc aaattgactt tttcagggcg cgggtcgttt
     2461 ttgaaggttt cgaccaaact caaaatcgga tcgccgggat agtattcgat gtgtcggtac
     2521 atagtcctta cctcttgctt tttccaagga ttttcttttt caacagcaca ccgctttcaa
     2581 tatggtgcgt aaacggaaat tgatcgaaca gggcggcacg ttcaaccgta tgggtttccg
     2641 ccaaggtgtc caaattggta cgcagcgttt cgggattgca ggaaatgtag atgatgttgt
     2701 caaactgcga caccagcttc aaagtttcct catcgatacc ggcacgcggc ggatcaatga
     2761 aaatagtgga aaatgcataa tccgtcaaag caataccacc ctccttaagg cgtgtaaact
     2821 cacgtttgcc ggtataggct tcggtaaatt cttcggcaga caggcgggcg attttgatgt
     2881 tgcctatccc gtttgcctca atattccatt gcgccgcacc tactgaagtt ttggaaatct
     2941 cggttgccaa aacctgtcgg aaatatcggg acagcggcag ggtgaaattg ccgtttccgc
     3001 aatatagttc gagtaaatcc ccacccagcc cttctgccgc accgcatgcc cattcaagca
     3061 ttttctgaca cacggcggca ttcggttggg taaaaccgcc ttcaatttgc cgataacgga
     3121 aatcccggtt gccgaccttc aaagtttccg ttacatagtc ctgttttaag actattttct
     3181 gtcccctgct ccgcccaata acggaaatat ccaactgttg ctgtaacgct tgcgccgcct
     3241 gcatccactc attatcaagc cttttgtggt aaatcatggt aaccagcatt tccccgccga
     3301 gcgtagacaa aaattcgacg gcataccaac ggtttctcag ttcggcagat tgggcggcaa
     3361 cggcaattaa ttcgggcatc aggcagttga ctgcctctga agcagcatcg aagcggtcgc
     3421 aacggatcag gcttgcccca ccagcctttt gtcctttttc aaacatggca taaaacattt
     3481 ccccgccttc gtgccaaatg cggaactcgg cacgcatacg gtagtgtttg tccggagatt
     3541 cgtacacctc ccactcggga acatccaaac ctgcaaaaag ggttttaagg cggtcttttt
     3601 tatcttgaag ctgctgcgtg tagtcgctca tatcgctatc ctgaaaaatc agaccggatt
     3661 ataagccgat tttcctcgcc gcacgcaaac tctttgactg ccgccccttc aatgacggac
     3721 gggattttgt gctaaaatcc gccatctttc cacactatac tgataaaggg aaaaatcatg
     3781 gcaggcaaca ctttcggaca actcttcacc gttaccacgt tcggcgaaag ccacggcgca
     3841 ggtttgggct gcatcatcga cggctgcccg cccggactgg cattaatcga atcagacatc
     3901 caagccgacc tcgaccgacg aaaacccggc accagccgcc acgttaccca acgccgcgaa
     3961 gccgaccaag tcgaaatcct ctccggcgta ttcgaaggca aaaccaccgg cacacccatc
     4021 gccctcttaa tccgcaatac cgaccagcgc agcaaagact acggcaacat cgccaccagc
     4081 ttccgccccg gccacgccga ctatacctat tggcacaaat acggcacgcg cgactaccgg
     4141 ggcggcggca ggagttccgc ccgcgaaacc gccgcccgcg ttgctgccgg agccgttgcc
     4201 aaaaaatggt tgaaagaaaa attcggcacg gaaatcaccg cctacgttac ccaagtcggc
     4261 gaaaaagaaa tccggtttga aggctgcgaa cacatttccc aaaatccttt ttttgccgcc
     4321 aaccatagcc aaattgccga gctggaaaac tatatggaca gcgtgcgcaa atcgttggat
     4381 tccgtcggcg cgaagctgca tattgaagcc gccaatgtcc ccgtcggctt gggcgaaccc
     4441 gttttcgacc gcctcgatgc cgaaatcgcc tacgcgatga tgggcatcaa cgccgtaaaa
     4501 ggcgtggaaa tcggcgcagg ttttgacagc gtaacgcaac gcggcagcga acacggcgac
     4561 gaactgaccc cgcaaggctt cctgtccaac cattcgggcg gcatcctcgg cggcatcagc
     4621 accgggcaag acatctgcgt caatatcgcc atcaaaccca ccagctccat cgccaccccg
     4681 cgccgcagta tcgacatcaa cggcaacccc atcgaactcg ccacgcacgg caggcacgac
     4741 ccctgcgtcg gcttgcgcgc cgcgccgatt gccgaagcta tgctcgcctt ggttttaatc
     4801 gaccacgccc tgcgccatcg tgcgcaaaat gcggatgttg ccgtggatac gcccgatatc
     4861 gcccgctcgg acaagtaaaa agatttagcc aaaacacggg ctttatacta aaataccgac
     4921 cattgccgtg ccgtctgaac gcacgattct tagaggaata caaccgaaat gacacaagaa
     4981 accgctttgg gtgcggcact gaaatccgcc gtccaaacta tgagcaaaaa gaaacagacc
     5041 gaaatgatcg ccgaccacat ctacggcaaa tacgatgtgt tcaaacgctt caaaccgttg
     5101 gcactcggca tcgatcagga tttgattgcc gctttgccgc aatacgatgc cgcactgatt
     5161 gcacgcgtcc tcgccaacca ctgccgccgt ccgcgctatc tgaaagcctt ggcgcgcggc
     5221 ggcaaacgtt tcgatttgaa caaccgtttc aaaggcgaag ttacccccga agaacaggcg
     5281 atcgcgcaaa accatccttt cgtgcagcag gctttgcaac agcagtccgc ccaagctgcc
     5341 gccgaaacgc cgtctgttga agccgaagca gccgaatctt ccgcagcaga ataaatcccc
     5401 aaatgaaatg ccgtctgaaa accgatttgg tttcagacgg catttttccg tatgcggcaa
     5461 tcacggttca aatatccaat tccgccgtat cgccttcgcg ctccatccag gcacggcggg
     5521 cggcggcttc gcctttgccc atcagtttga cgaagatgtc gcgcgtctcg tcatccgcgc
     5581 cttcggggat ttgtacctgc aacaggcggc gggtgtcggg gtgcatggta gtatctttga
     5641 gctggtctgg gttcatctca cccaaacctt tgaaacggct gatggaataa gcagtttctt
     5701 taacgccttc tttttgcagc cgctctaaaa tgccgtcaag ttcgttttgg tcgagggcgt
     5761 agaatttgcg ggcgggtttg cttttacctt gtgcgttgac atctacgcgg aacagcggcg
     5821 gctgggcgac gtagatgtgt ccgtcagcga ccagtttcgg gaagtggcgg tagaacaggg
     5881 tcagcagcaa aacttgaata tgcgagccgt ccacgtcggc atcggacagg atggcgattt
     5941 tgccgtaacg caggccgctt aaatcgggat ggtcgttgat gccgtgcgga tcgacgccga
     6001 tggcaactga aatgtcgtgg atttcggcgt tgccgaagag ctggtcgggg tggacttcaa
     6061 agctgttgag cactttgccg cgcaggggca ggatggcttg ggtggctttg tcgcgggcga
     6121 gtttggcgga gccgccggcg gaatcgcctt cgacgaggaa gagttcgttt tcgcggatgt
     6181 cttcgctttc gcagtcggtc agcttaccgg gcaggacggc gacgccgctg ccttttttct
     6241 tttcaatctt tttaaccgaa cgcatccgcg cctgtgcctg acggatggcg agttcggcga
     6301 tttttttgcc gaagtccacg ttttggttca gccacaattc caaagggtcg cccgatacgg
     6361 tagcaacgag tttcagcgcg tcgcggttgg tcagtttgtc tttggtctga ccttggaact
     6421 gcgggtcgag gacacgggca gagaggacaa aggcggtttt gccgaacacg tcgtcgcttt
     6481 gcactttcac gccgcgtggt aaaaggttgt gcagattgat gaagttgctg acggcgttga
     6541 acacggcttg tttcaagccc gcttcgtgcg tgccgcccag cggggtgggg atgaggttga
     6601 cgtagctttc gttggcgcac gagccttctt ccagccaggt cagggcaaac gcggcgcctt
     6661 cgccgatgct gaaatcgccg ttgtggccgt ctgaaatgta gttttcgcaa gagaagatag
     6721 gcacggcttc ctgcgcgtcg gcaatcaggt cggtcagata gcttttcaga ccgtcggggt
     6781 aatgccaggt ttgggtgtgc gcttcgtctt cgcctttgac cggacgggtc agggaaacgc
     6841 gcacgcccgg cagcagcacg gctttggcgc gcagcaggcg ttcgagttcg gggatgctgt
     6901 aattcgggct ttcaaaatat ttgccgtccg gccagacgcg cacttcggtg ccgctgtctt
     6961 tgacggcgca tttgcccact tgtgccaacg gttcgaccac gtcgccgccg gcaaacacga
     7021 tgcggtggat tttgccttcg cgtttgaccg ttacctcaag gcgggtggaa agggcgttgg
     7081 tcacggatac gcccacgccg tgcaggccgc ctgaaaaggc atacgcgctg ccgccgtctt
     7141 ttttgttgaa cttgccgccc gcgtgcagac gggtgaacac gagttcgact acgggtacgc
     7201 cttcttcagg gtgcagaccg acgggaatac cgcggccgtt gtcgcgtacg gaaagcgaac
     7261 cgtcttcatg aatttgcacg tcgattgccg tagcgaaacc gcccaacgcc tcgtccgccg
     7321 cgttgtcgat gacttcttgg cagatatggg tcgggctgtc ggtgcgggtg tacataccgg
     7381 gacgttcttt gaccggttcc aaacctttga ggacggtgat gctggattcg ctgtattggt
     7441 tgtttttagc cataggaata atctgaaagt aagaaaaaca acgctttcag acggcctgaa
     7501 agcgttgcgt tccgttgttt taccggttgc cggaaagttg gcgggcggca aagtcttcat
     7561 aactttccat accgcgcagg aagcgggaag aaagttcttt caatgccccc aaataaacgt
     7621 cgcgtttgaa atcaatcact tcgtcaacgg gcgcccaata ttggtgccaa cgccagccgt
     7681 caaattcggg gtggcgggtg gcgcgcaggt tgacatcgca atcccggccg gtcaggcgca
     7741 ggagatacca aatctgcttc tgcccgcgat aagagccgcg ccattcgcgg cgtacccagt
     7801 tgttcggcac gtcgtaacgc agccagtcgc gcgtccgccc gacgattttg acgtgttgcg
     7861 acagaagtcc gacttcttcg taaagctcgc ggtacatcgc ggtttcgggg ctttcgcccg
     7921 gcttgatgcc gccttgcgga aactgccaag aatgttcgcg cacgcgctta ccccaaaaga
     7981 cttcgtcgcg gttgttggtt aagatgatac cgacattggg gcgatagcct tccctgtcca
     8041 acacggtgtc gccctccgtt aaattcaatc ttgggatttt cccacaaatc gaacggtttt
     8101 gacaaatcag acggtatggt tcaagcatgt cgaaacacag acggactcgg gaaaatatct
     8161 taaatttggt ttacaataat gtgtttcaaa ttattcggga atcagaccat gttagacatc
     8221 caattgctcc gcagcaacac cgccgccgtt gccgaacggc ttgcacggcg cggttatgac
     8281 tttgataccg cacgttttga cgcactggaa gaacgacgca agtccgttca ggtgaaaacc
     8341 gaagaattac aagcctcgcg taacagcatt tccaagcaaa tcggcgcact gaaaggtcag
     8401 ggcaaacacg aagaggcaca ggcggccatg gatcaagtcg cccaaatcaa aaccgatttg
     8461 gaacaggcag ccgccgattt ggaagccgtg caaaaggaac tggacgcatg gctgttgagc
     8521 attccgaacc tgccgcatga ggacgtgcct ttcggtaagg atgaaaccga aaacgtcgaa
     8581 gtccgcaaag tcggcacccc gcgcgaattt gactttgaaa tcaaagacca tgtcgatttg
     8641 ggcgaacctt tgggtttgga tttcgaaggt ggcgcgaaac tttccggcgc acgatttacc
     8701 gtgatgcgcg gacaaatcgc ccgtctgcac cgcgccttgg cacagttcat gctggatacg
     8761 cacacgctgc aacacggcta caccgagcat tacacgcctt atatcgttga cgatacgacg
     8821 ctgcaaggta cgggccaact accaaaattt gcggaagatc tgttccacgt tacccgtggc
     8881 ggcgacgaaa ccaaaaccac ccaatacctg attccgacag ccgaagttac cctgaccaat
     8941 accgttgccg acagcattat cccgtccgaa caactgccgc tgaagctgac cgcgcattcg
     9001 ccctgtttcc gcagcgaggc gggttcgtac ggcaaagaca cgcgcggtct gattcgccag
     9061 caccagttcg acaaagtaga aatggtacaa atcgttcatc ccgaaaaatc atacgaagca
     9121 ctggaagaaa tggtcggcca tgccgaaaac atcctgaagg ctttggaact gccctaccgc
     9181 gtgattaccc tgtgtaccgg cgacatgggc ttcggcgcaa ccaaaacgta tgacttggaa
     9241 gtttgggttc ccgcgcaaaa tacctaccgc gaaatctcaa gctgctccaa ctgcgaagat
     9301 ttccaagccc gccgcatgaa ggcgcgtttc aaagacgaaa acggcaaaaa ccgcttggta
     9361 catactttga acggctccgg cttggctgtc ggcagaacgc tggtcgccgt attggaaaac
     9421 catcaaaacg ccgacggcag catcaacatc cctgccgcac tgcaaccgta tatgggcggc
     9481 gttgccaagt tggaagtgaa ataagtttgc aagctgcctg aacgtcaaat gccgtctgaa
     9541 acctggttca gacggcattt cctttaaact tttaaaacac gtcagccgtc ggcacgaacc
     9601 gcattgccgc aatcgccggt ctgtccgacc tcgcggatat tggacagcgt aacttccgaa
     9661 atattaccca acgcctcttc cgtcaaaaac gcctgatgac cggtaaacag cacgttatgg
     9721 caggacgaca accggcggaa cacgtcgtcg gtaatcacat cgttggattt gtcttcaaaa
     9781 aacagctcgc gctcgttctc gtacacatcc atgcccaatg cgccgatttt ccggcgtttc
     9841 aacgcctcaa tcgcggcggc actgtcaatc agcccgcccc ggctggtgtt gataatcatc
     9901 acgccgtctt tcattttgtc gaacgccgct tcgttcagca tatagtggtt ttccggcgtg
     9961 gcggggcaat gcagcgtgat gatgtccgac tgggcataca gctcgtccaa atccacatac
    10021 ctgccgccga ttttttccgc ttcggggttg caaaacggat cgtgagccag caggttcatg
    10081 ccgaaaccct ttaaaatccg catggttgca ataccgattt tccccgtgcc gataacgccc
    10141 gccgttttgc cgtacatatt gaaaccggtc agaccttcca gcgaaaaatt cgcatcgcgg
    10201 gtacgctgat aggctttgtg gatacggcgg ttcaaagtca gcatcagacc gaccgtatgt
    10261 tccgcaaccg attcgggcga ataggcaggc acgcgcacga ctttcaagcc caactcttca
    10321 gccgccttta aatccacatt attgaagccg gcacaacgca acgccacagt tttcacgcca
    10381 atttgcgcca atttttccaa cacgggccgg ctgccgtcgt cgtttacaaa aatacaaacc
    10441 gcttccgcgc cttccgccat tttcgccgtt ttcgcatcca gcataaaatc aaaaaactcc
    10501 agctcgaagc cgaaatgccg gttggcgcgg gtaaaatgtt cgcggtcata gcttttcgta
    10561 ccgtaaatcg caatcttcat caatatgtcc agttgtcgcc tatggttgag aaacggcata
    10621 atacactgaa ttcaaacaaa tcagtagaat atggcagatt aaaattgatt gcatgcacgg
    10681 catttccatt tcaaaacaca aaactcaatc gcccattgcc gccaaaagct ccgcctgatg
    10741 ttcggcaatc agggcatcgg tgatttctgc caaatcgccg tccatcacaa aatccagctt
    10801 gtgcagggtg aggttgatgc ggtggtctgt taccctgcct tggggatagt tgtaggtgcg
    10861 gatgcgttcg ctgcggtcgc cgctgccgat gagggatttg cgttcggcgg cttctttggc
    10921 ttgggcttcg cgtttttgcg cgtcgttcag gcgggcggcg aggactttca tcgcctgcgc
    10981 tttgttggcg tgttggctgc gtccgtcttg gcattcgacc accatgcctg tgggcaggtg
    11041 ggtgatgcgg acggcggaat cggttttatt gatgtgctgc ccgcccgcgc cggatgcgcg
    11101 aaaggtgtcg atgcgaaggt cggctgggtt cagttcgatg tcttccagtt cgtccgcttc
    11161 gggcatgacg gcaacggtgc aggcggaggt gtggatgcgg ccttggcttt cggtggcggg
    11221 gacgcgctgc acgcggtgtc cgcccgattc aaatttcaaa cggctgtacg ccccgagtcc
    11281 gacaatacgg gcgatgactt ctttatagcc gcccaattcg ctttcgttga cggacacgat
    11341 ttcaacctgc caacggttgc gctcggcgta gcggctgtac atacgcagca aatcgccggc
    11401 aaacagcgcg gcttcgtcgc cgcccgttcc ggcgcgtatt tcgatgaaga tgtttttgtc
    11461 gtcgtcggca tctttgggca gcagcagttt ttgcagttcg gtatcgagtt cgccgatttt
    11521 ggctttggcc gcttcgattt cttcggcggc aaaatctttc atttcggggt cggacagcat
    11581 ttcttcggca tctgccaagt cgctttgggc aagccgatag ttttggaata cttcgacgac
    11641 gggggtcagt tcggcgtgtt cgcgcgtgag cttgcggtag ttgtccatat cggatgtggc
    11701 ttcgggttgc cctaaaaggt gggtaacttc ttccaaccgg tcgccgagtt gttgcagttt
    11761 ttctaagata gacggcttca taattcttcc ataacaaacg ccgcctgaat ttcagacggc
    11821 atcaaaccgc ggtcattata atatattttc tgaatattca aaaagataat ctagggacgg
    11881 agcaggctgt cggcattgcg ttccgttatc gcggcgattt ccgccgcgcc ggtaccgcgt
    11941 atctgcgcgg caatttcggc aatccgaaga atgttggcag gcgtattaat ctcttttttc
    12001 agcataaacg ggctgtcggt ttccaatacg aaatccccgt cgttcaaggc tttaagcgta
    12061 tcgcgcactt tacgcgcgtt cggattgagc aacaacgaac cgatgccgat tttgaaaccc
    12121 agtttcgtca acacgcgcgc ttcttccgcg ctgcctgaga aggcgtgaac gatgccgcct
    12181 tgggcaaagc ctgtctgttt gacggcggcg gcgatgtcgg cggtggcttt gagattatgg
    12241 ataatcacgc ggcggcgcag ggtttgcgcg atggcaagct ggcggacgaa aacttggatt
    12301 tgccgttcgc gctgcggcgg cgtttgggtt ttgtcgtaaa aatccaagcc gatttcgccg
    12361 acccatgcct gcggataacg tgccaacatc gtttccaggc ggacgcaatc acgctcggca
    12421 atgccgtctg aaaaccaagg atggatgccg agcgcaatac ggatttgacc gtgttcggac
    12481 ggcatttccg acagttccgc cacgctttgc caatcctgcg ggcgcgtcgc gggaacgata
    12541 aaccgccaca cacccgcctg tcgcgcttcg gcaagcacct gcgccagatt gccgcgcaaa
    12601 acagaatcgg caagatggca atgtgtgtcg gtcagcctca tcttcacacc agccccaacc
    12661 gctgcaactc gtgtttcacc tcgtccgcgc cccatccttc agaaacggca agcgtcatca
    12721 atgcggttgc ggtttccaaa ttgcatttgc cgccgttgat gatgcccgag ttgcggaacg
    12781 cattgccttg cgcgtaaacg gcggcagttc tgccttgtcg gacttggctg atgttgagca
    12841 gcagcctgcc ttgctgcgtg aagtcttgca cggcgcggat aaagccttcg tctgccgggg
    12901 tgttgccgtg cccgtagctt tgcaggataa gggcgtgggc gggaagctgt ccgagtccgt
    12961 ccgcaagttc ttggacggca aagccgggga taagcgtgcg gacagcgatt tttgcctgag
    13021 gatcgggata acggattttg aggccgtctg aaacatctgc cgtgtcctga ttcgggatgc
    13081 ggacattgtg ccagccctgg gtttcgtccc actccgccag tgcgccgaaa tgcggattgt
    13141 cgaaaccggc ggcggtttcg gtgctgactt tgctgctgcc gacggcggga taaagtttgc
    13201 cgtcaaaggc aataagcgtc tgcttcaatc cgagtgggaa tgcggcaacg gcagtcgcca
    13261 gattgcgcgg cgcgtcgctg cccacggcgt tgtacggcca ttgggagccg gtcaggacga
    13321 ttggcttgtc caaaccctgc agcgcgaggg cgaacagatt ggcggtatag gcgagcgtgt
    13381 ccgtgccgtg cagcaccaaa acgccgtcgt actgcggcag cgcggtggca atgatgtcca
    13441 gccaagcgca ccagttttgc agttggacgg cggaagaatc aatcagcgtc ccacaaacgt
    13501 gccaatcgaa atccatgccg tttgaaaacg gcgcgagtgc ctgcccgacc agcgcggtat
    13561 cggggcgcag gccttcgctg ctttgcgtca tgccgatggt gccgccggta taaaggacaa
    13621 aaattttctg tttcatggct catcctgaaa atgcaaagac cgcctgaaac gcgaaatgcg
    13681 tccggacggt cgaaaatctg atttactgct gcttctgtgc cgcttttttc gctgcctttt
    13741 ccgccttgcg tttggcgcgt ttttcgctca attgtgcgcg gtaaagctga taatgtcggc
    13801 gtttgcgcca ccagaaccac gccagcgccg ccgccagcac gcccaatgcg atgaagatgc
    13861 cggattgcag gctgtgcatt ttcgccatca gccaatcgat gttgtgcgcg ccgtactcgc
    13921 ccaagtaaat ccaaacgggc acggaaatca gcgcggcaag cccgtccata atcagaaagc
    13981 gcagatacga tactttgcgg ctgatgccgg cggtaacgaa aacggcagtc cgcaaacccg
    14041 gcaggaagcg ggcgacaaac agaacccagt tgccgtattt gtcgaatttt tcctgaacct
    14101 gtgcgtaacg tttcggcgtc atgatgcgcg caatcggttt gaacttgagg attttctgcc
    14161 cccagatgcg tccggcggcg aacatgatgc cgtccccgac caatacgccg agcataccga
    14221 ctgcaaacat aatatgcgga ttggtataac ccatacccga aatcacgccg cctgttacca
    14281 aggtcaaatc ctcgggaatc ggcacgccga aaccgcagat gaccaaaacg aaaaacacgg
    14341 ccgcgtagcc gtattcgaca aaaaaggctt ccaaaagggc aaacatagcg gatattccat
    14401 tgtcggagat aaaaagtcag aacaagccga aacattttct gcgcgaaacg gcattctatc
    14461 aaagattatg ccgtctgaaa gcggcagggg gcagattcgc gccctctgcc ggacgttcag
    14521 acggcattta aacaggaaaa ccgccgctgt tgaaacggtt ttgcctgatt ttgcctaaat
    14581 gccgccgatg gcggcggcaa tgcgttccgc cccttcgcgc gcccaatccg cctgccgcgc
    14641 ctccaccatc acgcgcacga cgggttcggt tcccgaagcg cgcaacacga cacgcccttt
    14701 gccttcgagt tctttttcca cttccgccaa cacgtctttt gaggcttcct gccagttttg
    14761 ccctttgccg atacggacat taatcatcgt ttgcggatac ggctgccagt cggcgcaaac
    14821 ggcggcaagg tcttggttca gcgtttgcaa tgccgccaaa acctgcaagg cggaaataat
    14881 gccgtcgccg gtgttgtgtt tgtccatgca caaaatatgg ccgctggctt cgccgccgac
    14941 gagccagccg cgttggttca gctgttccaa cacatagcgg tcgccgactt tggcgcggca
    15001 gaaatccacg ccctgctctt tcagggcgat ttccatcgcc atattggtca tgaccgtgcc
    15061 gaccacgccg ccgatgttga taccttctcg ggcgcgggct ttagcaatga cgtaaatcag
    15121 gctgtcgccg tcgtaaacct taccgttttt atcgaccatc atcaggcggt cgccgtcgcc
    15181 gtctaaggcg atgccgtagt tggcttcatg ctgtaaaacg gctgcctgga gtgtcttggt
    15241 ataagtcgca ccgcattttt cgttgatgtt gtagccgttg ggttcgtcgc cgatgctgac
    15301 gacttgtgcg cccagttcgt gaaacacttt gggtgcgacg ctgtaagccg cgccgttggc
    15361 ggcatcgacg accagcttca gcccgcgcaa atcggaatgc gtagggaagg tggatttgca
    15421 aaattcgata tagcggtcgt ccgcgccgtt gatgcggcgt gcgcgaccga gacgggcgga
    15481 cggttgggtt ttcatttcgc cgtcgatttt ggcttcgatt tccaactcga cttcatcgga
    15541 aagtttcacg ccgccttcgg cgaagaattt gatgccgttg tcggaatagg cgttgtgcga
    15601 cgcggaaatc atcacgccgg cggacaggcg caacgcgcgg gtcagataag ccacgccggg
    15661 cgtgggcagc ggtccggtct gtaccacatt cacacccgcc gccgtaaaac cggccaccaa
    15721 agcggcttcc agcatatagc cggaaatgcg cgtgtctttg ccgatgagga cggtcggttt
    15781 ctggtcggtg tcgtgctgca ccagtacctg ccccgccgca tagccgagtt tcaatacaaa
    15841 atcgggcgta atcggaaact gcccgacttc gccgcgcacg ccgtccgtgc cgaaatattt
    15901 ttttgccatg tgttgctccg agaatgtgaa ccgttgtccg agattataca gtcagtttgt
    15961 gccttgctgt ctgcaccgtt gatgccgtct gaagccgccc cgtccttttc agacggcatg
    16021 aagtatgtga accgctgttt acagattgat gcccaacgct tcccacgcct tcaaagcatc
    16081 cgccgtcgcc ttcacatcat gcacccgcac gatttgcacg ccgcgcgcca cggaagccag
    16141 cgccgccgcc acgctgccgt gtacgcgcgc cgccgcgtcg gtttcgcccg tcagttcgcc
    16201 taccatgcgt ttgcgcgata cgccgatcag cagcggaaag cctgtttccg ccatcaattc
    16261 gggcaaatgc ctcatcagcg cgatattgtg ttgcagggtt ttgccgaagc cgaaacccgg
    16321 atcgagcgtg atgcgttgcg gtgcgatgcc tgccgcgatg cattccgccg cccgcgcttt
    16381 caaataccgc gccacttcac cgacaacatc ctgatatttc ggattaatct gcatgttttc
    16441 aggcaaaccc cgcatgtgca tcaggcaaat gcccgtgtcc gtctggcgcg ccagcaattc
    16501 gaccgcacct tcgtcggtca acgccgccac atcgttaata atatcgatgc caccgagtgc
    16561 caacgctttt tccataatca ccgtgcggcg cgtgtccaaa ctgacgggaa cgccccaccc
    16621 cgccacttct gccaatacag gctcaacccg cgcccattct tcttcggacg aaacataatc
    16681 cgcacccggc cgcgtcgatt cgccgccgat gtcgagaatg tccgcaccct ctttcaaaag
    16741 ccgttcggcg tgcgccaaag ctgttcgggc gttttgcgaa tacgcgccgc cgtcggaaaa
    16801 agaatcgggc gtgagattca cgatgcccat gattttcggc ttgtccaaac cgatttcaaa
    16861 ccgtcctgcc tgccaaacgt gtcgtgccat ctgaactcct cccaaaataa aaaacagatt
    16921 atatgccgtc tgaaaccgtc ttgtgcgctt cagacggcac cgctattcgg gcggcagacg
    16981 gcatgttgtc cgaatgtctg ctccgccttt gaatctgccg gtatgcctgc tatccgcccg
    17041 acttttcaaa acaggttccg acgattccgc acgcgcctgc cgcctttgcc aagccgtaca
    17101 ggatttcctg cggcatatcg cggttccata atcccgtaat attcgcaatc acgggcagat
    17161 ggctgatttg gcggactttc acgatggatt cgacatccaa acggtaggga tggtctttgg
    17221 tatggctcaa cacgcccgac tcgcccagaa tcaggtggcg gttgccgcgc gagacaacat
    17281 attctgcggc attcaaccaa tcttcggcag aatggtgctt gtctttacac agcaccaagg
    17341 gaatgttcag gcttccggct tcattcaata cggcaagatc ggacatcagc ccgccgccca
    17401 aatacaggat gtccgccccc gcattcaaag ccgcttcgac atggcggacg ttgcggacgc
    17461 gcaccaatac gggtttccct gcgccatgcg ccgatgcggt ctgttccgcc aaccgtctgc
    17521 accgtccccg cctttcatcc gcacttgaag tgtcgtataa gtttgccgaa gtgaaaaacg
    17581 gatccagaaa cactgcatcc gcattgcgcc atactgacgg ttctgcggcg atacggacgg
    17641 tttccccgcc gccgaaagcc acgcctttgg cggcaacgcg gctgtcttcc gcccgatttt
    17701 cccgactgac ggttttccat gtatccaaaa tgcggacggc tttctcgacc tccggcagcg
    17761 tctgcacctc cctgacgctc aaaaccctat cgtcgccgat tgcgccgatg acggtacgct
    17821 cgtcgccgtg agaaatgtgt tctcgcagac ctctgctgcg gataaaggcg acaacgccgg
    17881 caatgtccgc ttcggcggca cgcctgctca tgacaataat catatttcct cctgacacaa
    17941 gaaacggcct gcccaaaata ggatttttgc aagccgtgtt atactgtggc gtgttttaca
    18001 gattgttcgg gctatggatt tattatcggt tttccacaaa taccgtctga aatatgtggt
    18061 agcggtgctg acgatactgc ttttggcggc aatcgggctg cacgcttccg tctatcgcat
    18121 cttcacacct gaaaacatcc gcagccgcct ccaacaaagc attgcacaca cacaccggaa
    18181 aatctcgttt gatgcggaca ttcagcgcag gctcctgccc cggccgaccg tcatcctgaa
    18241 aaacctgacc attaccgaac ccggcggcga ccggactgcc gtttccgtcc aagaaaccaa
    18301 aatcggattg agctggaaaa acctgtggtc ggatcagata cagattgaaa aatgggtggt
    18361 ttcgagtgcg gaacttgctc tgacgcgcga cgggaaaggt gtttggaaca ttcaagacct
    18421 gatcgacagc caaaaacgcc aagcctcagt caaccgcatt atcgtcgaaa acagcaccgt
    18481 ccgcctcaat ttcctgcagg aacagcttat cctgaaggaa atcaacctca acctgcaatc
    18541 ccccgattcg tcggggcagc cgtttgaaag ttcgggcata ctggtttggg gaaagctgtc
    18601 cgtcccgtgg aaaagcaggg ggctgttcct ttcagacggc atcggcacgc ccaaaatctc
    18661 accgttccat tttgaagctt ccacttcgct ggacggacac ggcattacca tttccaccac
    18721 cggcagccct tctgtccgct tcaacgccgg cggagcggat gccgccggcc tcggcctgcg
    18781 tgcagacact tccttccgca acctccacct gaccgcccaa atccccgcgc tggcactcag
    18841 gaacaacagc attaaaattg aaaccgtcaa cggcgcattt accgccggcg gcgaatatgc
    18901 ccgatgggac ggttcgttca aactcgacaa agccaacctg cactccggca tcgccaacat
    18961 cggcaacgcc gaaatctccg gcagcttcaa aacaccgcgc caccagacca acttctccct
    19021 caattcgccg ctcgtatgga cggaaaacaa agggctggac gcgccgcgcc tgtatgtatc
    19081 gacccttcag gataccgtca accgcctgcc gcaaccccgt ttcatcagcc ggctcgacgg
    19141 ttcgctgtcc gtaccgaatc tgcaaaattg gaatgccgaa ttaaacggca cattcgaccg
    19201 ccaaaccgtt gccgcgaaat tcagatacac acatgaagac gcaccgcatc tggaagccgc
    19261 cgtcgcactg caaaaattga acctgacccc ctatcttgac gacgtgcggc aacaaaacgg
    19321 caaaatattt cccgacaccc tcgccaagct gtccggcgac atcgaggcgc acctgaaaat
    19381 cggaaaagtc caacttcccg gcctgcaact ggacgatatg gaaacctacc tccacgccga
    19441 caaaggccat atcgcgctca gccgtttcaa gtcagggctt tacggcggcc ataccgaagg
    19501 cggcatcagc atcgccaaca cccgtcccgc cacttaccgc ctgcaacaga atgcaagcaa
    19561 catccaaatc caaccgctgc tgcaagacct gttcggcttc cacagcttca gcggcaacgg
    19621 cgacgcggtc atcgacctga ccgcgggcgg cgaaacccga aaagagctta tccgctcgct
    19681 tcaaggcagc ctgtcgctga atatttccaa cggcgcatgg cacggtatcg acatggacaa
    19741 tatcctgaaa aacggcattt cgggcaaaac tgccgacaat gccgtaccca gcacaccctt
    19801 ccaccgattc acgctcaaca gcgaaatttc agacggcatc agccgccaca tcgataccga
    19861 actcttctcc gacagcctct atgttaccag caacggctat accaatctgg atacgcagga
    19921 attgtctgaa gatgtcctta tccgcaacgc cgtccatccg aaaaacaaac cgattcccct
    19981 gaaaatcacc ggtacggtgg acaagccgtc cattaccgtc gattacggca ggctgaccgg
    20041 cggcatcaat tcgcgcaaag agaaacagaa aatcctcgaa gataccctgc tggaacaatg
    20101 gcagtggctc aaacctaaag aaccgtaaat accctgcgta caaaaatgcc gtctgaaaca
    20161 cccccgcgct tcagacggca ttaccgtaaa acctacaacc ccaattcccc ccaaatccca
    20221 tcaatcttag ccgtaaccgc agggtctttt ttgatgacgc gtccccattc gcggtcggtt
    20281 tcgcccggcc atttgttggt cgcatccaaa cccattttgc cgccgagtcc gctaacgggg
    20341 ctggcgaagt cgagataatc gatgggcgtg ttttccacca acacggtatc gcgtactggg
    20401 tccatgcgcg tggttaccgc ccagatgact tctttccagt cgcgcacgtt cacgtcgtca
    20461 tcgaccacga tgatgaattt ggtgtacata aactgtcgca ggaacgacca gcagcccatc
    20521 atcacgcgct tggcgtgtcc ggcgtactgt tttttcatgc tcaccaccgc catgcggtag
    20581 gagcagcctt cgggcggcag gtagaaatcg gtgatttcgg ggaactgctt ttgcaaaagc
    20641 ggtacgaaca cttcgttcaa cgccacgccc aaaacggcag gctcatcagg cggtttgccc
    20701 gtgtaggtcg aatggtaaat cgggttttcg cgcatagtga tgcgttcgac cgtgaacacg
    20761 ggaaaatgat cctgctcgtt gtaatagccc gtgtggtcgc cgtatggacc ttccaacgcg
    20821 gtttcgttcg gatgaatgac gccttccaac acgatttctg cgcgggcagg cacttgcaaa
    20881 tcgttgccga tacatttcac cagctccgtc cgcgaaccgc gcagcagtcc ggcaaactgg
    20941 tattcgctca aagtatcggg aacaggcgtt accgctccga gaatagtggc agggtcgcaa
    21001 ccgagcacga cggcgacggg atacggcgta tcgggattga gtttgcggaa ctcctgataa
    21061 tccaacgcgc cgccgcgatg cgacagccag cgcataatca gcttgttttt gccgatgagt
    21121 tgttggcggt aaatgccgag attttggcgt tttttgtgcg gcccgcgcgt tacggtcaag
    21181 ccccatgtta ccagcggcgc aacgtcttcc ggccagcaat gctgaatcgg aagtttatac
    21241 aaatcaacgt tttcgccttc ccacacgatt tcctgacacg gcgcgttttt caccacgttc
    21301 ggcgccatgc tccaaatgtc tttcagcagc ggcagtttgg aaaacgcgtc tttgatgcct
    21361 ttgggcggtt cgggttcttt caaatacgcc agcgtctgcc cgatttcgcg cagcttggac
    21421 acgctgtccg cgcccatgcc catcgccaca cgttcgggcg tgccgaacag gtttgccaac
    21481 acgggataat catagcgcgt accgtcgggc ttaatcgggt tttcaaacag caacgccggc
    21541 ccttcggcac gcaacacgcg gtcggcgatt tcggtcattt ccaaatgcgg ggaaacgggg
    21601 tgtgcgacgc gcttgagttt gccctgctgc tcgagcatgg cgatgaagtc gcgcaggtct
    21661 ttgtatttca tattcatcct ttttgtcctt ttatcctgag caatccgatt cggataccgc
    21721 ccctatcctt gcctgcgctt cggcatattc tatgccgtga taaaagtcgc gtaccagcgg
    21781 atgttcgccg ccttgatgga gttgcaacaa aggacgttga ccatcgggtt gggtaacgac
    21841 attgcagtgc agaccgaagg tgtcggtttc ataagggggc agctggttgc agatcatgcc
    21901 gaaataaaca gcgttttcaa ggttgtcgta aaagcggctt tgatagtcgt taaaactctt
    21961 ttcgctgacg gacacccaca cgccgtattc cagcgtttcc tcatgcccga taatcggaat
    22021 aggcagcact gcgcggataa agcggtcggt ttggtcggga tagcggatga tgcagaaatc
    22081 agaatcgcat tctgcttgat aagcaatgcg ttcttcttca ctgagttgat tatagggatc
    22141 gggggcggta aagccgattg cgggcatatc ttcatgtttt tcgccgcagg aagtgcaagt
    22201 gtacataagg tttcagactt tcaaaacgag tttgcggtaa agccattcgc cggcaaacgg
    22261 catccccatc aatacatagg caatcacgcc ggtataaacc gcccaccaat catatcgccc
    22321 caaccgtgcc aacaaagcgg caagcgtccc gttggcaata aagaatacgc accaaacctg
    22381 cgttacccgg cgggtatagc gcacagcttt ttcaggcagg tcgggctgtt gcagccgcgc
    22441 aagtttttca atcaccgtct gcccggcaaa caggctgccg ccgaacaccg ccaacatcat
    22501 cagattgacg aggacgggat accaatacat cgaatcatgc cgcccgaaca ccaatactgc
    22561 ggcaaaaaac agtgtaataa acaaagccgc ataacgctgt tggggcagtt tggcagtcag
    22621 ggcgcgcagc agccacaacc cgcacatcgc cgccgccagc cagacaaacc agcccgcctc
    22681 cctgccgtaa tatagtggat taacaaaaac cagtacagcg ttgcctcgcc ttgccgtact
    22741 gtctgcggct tcgtcgcctt gtcctgattt ttgttaatcc actataccac aaagcgggat
    22801 aggcaatgct taatacggtc agaaaaatat gtccgaaaaa accgggtttc attttgaatc
    22861 cgcacaaatg ttttcagacg gcatccgata aaaacatgcc gtctgaaaaa taattagaaa
    22921 tacccgatta gcccgcctga atcttcaata ccgcctgtac cacgtcgttg acggtgcgga
    22981 cattgcggaa atcttcagcc tgcagcttgc gggctgccac aaccattcac gattgcgata
    23041 tacccggcgg cattcccgac tgccgttcag cagaaagcgc acccattcca aaccactcca
    23101 atatgcctcg ggcagcatac cggcttcaga cggcatatcg tccgaagcag ataaagtcag
    23161 gctgtaacgc gtccctttgg tcagaaccat cgccaaagca taagcaaacg gcgcgcgcgt
    23221 tgccgatacg acatatcctt ccggcagcgg atcgtccgcc gccaaaacca aaaccgaccc
    23281 gcatccctct tccaacagtg atgccgcttc cgccaatgcc gtttccacac cgtcggcaca
    23341 cacggccaat gccgtctgct cgctcatatc ccgcctcaat atcgaccatt accccgccgt
    23401 tgcattgtgc accgacaaac cgaacgaagt cggcgacacg gtttgcgatt tcaacagttc
    23461 caaccacaaa tcgaaactgc gcgccatttc cccgtcgtgc gaggcataaa ctatagtgga
    23521 ttaaatttta ggggctgtac tagattagca gatatgttac cctcgaaata tgaagataac
    23581 acactgcaaa ttaaagaaaa aagtacagaa agaactgctc cgttttttgt gct
//
LOCUS       DAWGNT010000014        23356 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.014, whole genome shotgun sequence.
ACCESSION   DAWGNT010000014 DAWGNT010000000
VERSION     DAWGNT010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 23356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23356
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.014"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            44..1720
                     /gene="pilB"
                     /locus_tag="WHR98_000373"
     CDS             44..1720
                     /gene="pilB"
                     /locus_tag="WHR98_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HEZ2307105.1"
                     /translation="MSVGLLRILVQNQVVTVEQAEHYYNESQAGKEVLPMLFSDGVIS
                     PKSLAALIARVFSYSILDLRHYPRHRVLMGVLTEEQMVEFHCVPVFRRGDKVFFAVSD
                     PTQMPQIQKTVSAAGIEVELVIVEDDQLAGLLDWVGSRSTSLLQELGEGQEEEESHTL
                     YIDNEEAEDGPVPRFIHKTLSDALRSGASDIHFEFYEHNARIRFRVDGQLREVVQPPI
                     AVRGQLASRIKVMSRLDISEKRIPQDGRMQLTFQKGGKPVDFRVSTLPTLFGEKVVMR
                     ILNSDAASLNIDQLGFEPFQKKLLLEAIHRPYGMVLVTGPTGSGKTVSLYTCLNILNT
                     ESVNIATAEDPAEINLPGINQVNVNDKQGLTFAAALKSFLRQDPDIIMVGEIRDLETA
                     DIAIKAAQTGHMVFSTLHTNNAPATLSRMLNMGVAPFNIASSVSLIMAQRLLRRLCSS
                     CKQEVERPSASALKEVGFTDEDLAKDWKLYRAVGCDRCRGQGYKGRAGVYEVMPISEE
                     MQRVIMNNGTEVDILDVAYKEGMVDLRRAGILKVMQGITSLEEVTANTND"
     gene            complement(1805..2014)
                     /locus_tag="WHR98_000374"
     CDS             complement(1805..2014)
                     /locus_tag="WHR98_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HEZ2307106.1"
                     /translation="MAESRQTRLQVKCPTCQTAVVWEPENAFRPFCSQRCKLIDLGGW
                     ADGKYTVSGQTESLPEISEPDMAYR"
     gene            complement(2007..2639)
                     /locus_tag="WHR98_000375"
     CDS             complement(2007..2639)
                     /locus_tag="WHR98_000375"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEZ2307107.1"
                     /translation="MTVWVGLTGGIGSGKSAAAQCFADLGVPRIDADAAAHSLTASDG
                     IALPEIRRLFGDTVFDTQGLLRRDILRKEVFASPSRKALLESVMLPLIFSEIKKQQET
                     FTDAAYGIVEIPLLTEKRQFIILIRRVLTISAPVEKRIGRVMARSGLTRGEVAAVISH
                     QASESERLLLADDVLLNDGSLKSLREKTMRLHAFYSGIFASKPTQGKHNG"
     gene            complement(2641..3501)
                     /locus_tag="WHR98_000376"
     CDS             complement(2641..3501)
                     /locus_tag="WHR98_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEZ2307108.1"
                     /translation="MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVF
                     AKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAWQNIPIVSYLLLRGKCASCQTKI
                     SIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
                     LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAAL
                     GAWLGISALPVLIFVSSLIGLVAAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRA
                     VNWWLTHPVL"
     gene            complement(3575..4807)
                     /gene="pilG"
                     /locus_tag="WHR98_000377"
     CDS             complement(3575..4807)
                     /gene="pilG"
                     /locus_tag="WHR98_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4 pilus assembly protein PilG"
                     /protein_id="HEZ2307109.1"
                     /translation="MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARK
                     KLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVARGHGN
                     PSMTEMLMEIRGEVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
                     KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPPLTQTV
                     MDMSDFFVSYGWMVLIALGFAIYGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTI
                     ARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRVIQGLSMTSGMRATE
                     LFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIG
                     TLLVAMYLPLFNLGNVVA"
     gene            5317..6960
                     /gene="pgi"
                     /locus_tag="WHR98_000378"
     CDS             5317..6960
                     /gene="pgi"
                     /locus_tag="WHR98_000378"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEZ2307110.1"
                     /translation="MNAFTRAWYALERHYQDTRHVLLRDRFACEPDRFERMHERLDGM
                     LFDYSKNRLGEDTLQLLCRLAETADLEGKMRALRTGAKVNGSEGRAALHTALRLPDGA
                     DAVYADGRDVLPEIRRELNRALEFAHSLDDGSYQGTTGKRITDFVHIGIGGSDLGPAM
                     CVQALEPFRRHITVHFAANADPACLDAVLCRLNPETTVFCVASKSFKTPETLLNAQAV
                     KAWYRGAGFSESETACHFCAVSADTAAAAAFGIAAERVFAMYDWVGGRYSVWSPVGLP
                     VMVAVGGARFRELLAGAHAMDSHFFHTPPRRNIPVLMALIAVWYNNFQHADGQTAVPY
                     SHNLRLLPVWLNQLDMESLGKSRASDGSPAVCKTGGIVFGGEGVNCQHAYFQLLHQGT
                     RLIPCDFIVPVTAQGVEDGRSRFTVANAFAQAEALMKGKTLDEARAELADLPEAERER
                     LAPHKEFPGNRPSNSILLDRLTPYNLGMLMAAYEHKTFVQGAIWNVNPFDQWGVEYGK
                     QLAKTIIGELEGGTSVHDASTEGLMAFYRECRLKGGGAA"
     gene            7127..7948
                     /gene="dapD"
                     /locus_tag="WHR98_000379"
     CDS             7127..7948
                     /gene="dapD"
                     /locus_tag="WHR98_000379"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HEZ2307111.1"
                     /translation="MSLQNIIETAFENRADINPTTVTPEVKEAVLETIRQLDSGKLRV
                     AERLGVGEWKVNEWAKKAVLLSFRIQDNEILNDGVNKYFDKVPTKFADWSEDEFKNAG
                     FRAVPGAVARRGSFVAKNVVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQASPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRT
                     TGEIYQGRVPAGSVVVSGSMPSKDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI"
     gene            8103..8888
                     /gene="fabI"
                     /locus_tag="WHR98_000380"
     CDS             8103..8888
                     /gene="fabI"
                     /locus_tag="WHR98_000380"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEZ2307112.1"
                     /translation="MGFLQGKKILITGMISERSIAYGIAKACREQGADLAFTYVVDKL
                     EERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSG
                     DFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVM
                     GMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLR
                     RNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYSINALSTEG"
     gene            complement(9132..10130)
                     /gene="ilvE"
                     /locus_tag="WHR98_000381"
     CDS             complement(9132..10130)
                     /gene="ilvE"
                     /locus_tag="WHR98_000381"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HEZ2307113.1"
                     /translation="MSRPVPAVFGSVFHSQMPVLAYREGKWQPTEWQSSQDLSLAPGA
                     HALHYGSECFEGLKAFRQADGKIVLFRPTANIARMRQSADILHLPRPETQAYLDALVE
                     LVKRAADEIPDAPAALYLRPTLIGTDPVIGKAGSPSETALLYILASPVGDYFKVGSPV
                     KILVETEHIRCAPHMGRVKCGGNYASAMHWVLKAKAEYGANQVLFCPNGDVQETGASN
                     FILINGDEIITKPLTDEFLHGVTRDSVLTVAKDLGYTVSERNFTVDELKAAVENGAEA
                     ILTGTAAVISPVTSFVIGGKEIEVKSQERGYAIRKAITDIQYGLAEDKYGWLVEVC"
     gene            10440..10754
                     /locus_tag="WHR98_000382"
     CDS             10440..10754
                     /locus_tag="WHR98_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HEZ2307114.1"
                     /translation="MKLIYTVIKIIILLLFLLLAVINTDAVTFSYLPGQKFDLPLIVV
                     LFGAFVVGIIFGMFALFGRLLSLRGENGRLRAEVKKNARLTGKELTAPPAQNAPESAK
                     QP"
     gene            10765..11934
                     /gene="lapB"
                     /locus_tag="WHR98_000383"
     CDS             10765..11934
                     /gene="lapB"
                     /locus_tag="WHR98_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HEZ2307115.1"
                     /translation="MDNELWIILLPIILLPVFFAMGWFAARVDMKTVLKQAKSIPSGF
                     YKSLDALVDRNSGRAARELAEVIDQQPQSYDLNLTLGKLYRQRGENDKAINMHQTLLD
                     SPDTTGAKRARVLFELAQNYQSAGLVDRAEQIFLSLQDGEMAREARQHLLNIYQQDRD
                     WEKAIETAQLLSHDEQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALEANKKCTR
                     ANMILGDIEYRQGNFPASVEAYAAIEQQNHAYLSMVGEKLYDAYAAQGKPEEGLNRLI
                     GYMQTFPELDLINVVYEKSLLLRGEKEAAQTAIELVRRKPDLNGVYRLLGLRISDMDP
                     TWKADADMMRSVIGRQLQRSVMYRCRNCHFKSQVFFWHCPACNKWQTFTPNKIEV"
     gene            11959..12375
                     /gene="gloA"
                     /locus_tag="WHR98_000384"
     CDS             11959..12375
                     /gene="gloA"
                     /locus_tag="WHR98_000384"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HEZ2307116.1"
                     /translation="MRLLHTMLRVGNLEKSLDFYQNVLGMKLLRRKDYPEGRFTLAFV
                     GYGDETDSTVLELTHNWDTERYDLGNAYGHIAVEVDDAYEACERVKRQGGNVVREAGP
                     MKHGTTVIAFVEDPDGYKIEFIQKKSGDDSVAYQTA"
     gene            complement(12548..15061)
                     /locus_tag="WHR98_000385"
     CDS             complement(12548..15061)
                     /locus_tag="WHR98_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEZ2307117.1"
                     /translation="MKNNRQIKLIAASVAVAASFQAHAGLGGLNIQSNLDEPFSGSIT
                     VTGEEAKALLGGGSVTVSEKGLTAKVHKLGDKAVIAVSSAQAVRDPVLVFRIGAGAQV
                     REYTAILDPVGYSPKTKSALSDGKTHRKTAPTAESQENQNAKALRKTDKKDSANAAVK
                     PAYNGKTHTVRKGETVKQIAAAIRPKHLTLEQVADALLKANPNVSAHGRLRAGSVLHI
                     PNLNRIKAEQPKPQTAKPKAETASMPSEPSKQATVEKPVEKPEAKVATPEAKAEKPAV
                     RPEPVPAANTAASETAAESAPQEAAASAIDTPTDETGNAVSEPVEQVSAEEETESGLF
                     GGSYTLLLAGGGAALIALLLLLRLAQSKRARRTEESVPEEEPDLDDAADDGIEITFAE
                     VETPATPEPAPKNDVNDTLALDGESEEELSAKQTFDVETDTPSNRIDLDFDSLAAAQN
                     GILSGALTQDEETQKRADADWNAIESTDSVYEPETFNPYNPVEIVIDTPEPESVAQTA
                     ENKPETVDTDFSDNLPSNNHIGTEETASAKPASPSGLAGFLKASSPETILEKTVAEVQ
                     TPEELHDFLKVYETDAVAETAPETPDFNAAADDLSALLQPAEAPAVEENVTETVADDL
                     SALLQPFETPDVGETAAETVAETPDFNAAADDLSALLQPAEAPSVEENITETVAETPD
                     FNATADDLSALLQPSEVPAVEENAAETVADDLSALLQPAEVPAVEENAAEITLETPDS
                     NTSEADALPDFLKDGEEETVDWSIYLSEENIPNNADTSFPSESVGSDAPSEAKYDLAE
                     MYLEIGDRDAAAETVQKLLEEAEGDVLKRAQALAQELGI"
     gene            15369..15899
                     /locus_tag="WHR98_000386"
     CDS             15369..15899
                     /locus_tag="WHR98_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HEZ2307118.1"
                     /translation="MKFVSDLLSVILFFATYTVTKNMIAATAVALVAGVVQAAFLYWK
                     YKKLDTMQWVGLVLIVVFGGATIVLGDSRFIMWKPSVLFWLGALFLWGSHLAGKNGLK
                     ASIGREIQLPDAVWAKLTYMWVGFLIFMGIANWFVFTRFESQWVNYKMFGSTALMLVF
                     FIIQGIYLSTCLKKED"
     gene            15902..16192
                     /locus_tag="WHR98_000387"
     CDS             15902..16192
                     /locus_tag="WHR98_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEZ2307119.1"
                     /translation="MEYFMLLATDGENVYEARMAARPEHLKRLETLKSEGRLLTAGPN
                     PLPEDSNRVSGSLIVAQFESLDAAEAWAEDDPYVHAGVYSEVLIKPFKAVFK"
     gene            16192..16470
                     /locus_tag="WHR98_000388"
     CDS             16192..16470
                     /locus_tag="WHR98_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family transcriptional regulator"
                     /protein_id="HEZ2307120.1"
                     /translation="MPAVDLIRERLQTLDPLVLEIGDESHLHKGHAGNTGGGHYAVLV
                     VSGRFEGVSRLNRQKTVKSLLKDLFSGGMIHALGIRAATPDEYFHTAD"
     gene            16519..17385
                     /locus_tag="WHR98_000389"
     CDS             16519..17385
                     /locus_tag="WHR98_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEZ2307121.1"
                     /translation="MKAKILTSVALLACSGSLFAQTLATVNGQKIDSSVIDAQVAAFR
                     AENSRAEDTPQLRQSLLENEVVNTVVAQEVKRLKLDRSAEFKNALAKLRAEAKKSGDD
                     KKPSFKTVWQAVKYGLNGEAYALHIAKTQPVSEQEVKAAYDNISGFYKGTQEVQLGEI
                     LTDKEENAKKAVADLKAKKGFDAVLKQYSLNDRTKQTGAPVGYVPLKDLEQGVPPLYQ
                     AIKDLKKGEFTATPLKNGDFYGVYYVNDSREVKVPSFDEMKGQIAGNLQAERIDRAVG
                     ALLGKANIKPAK"
     gene            17456..18214
                     /locus_tag="WHR98_000390"
     CDS             17456..18214
                     /locus_tag="WHR98_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEZ2307122.1"
                     /translation="MKQKKTAAAVIAAMLAGFAAAKAPEIDPALVDTLVAQIMQQADR
                     HAEQSQKPDGQAIRNDAVRRLQTLEVLKNRALKEGLDKDKDVQNRFKIAEASFYAEEY
                     VRFLERSETVSESALRQFYERQIRMIKLQQVSFATEEEARQAQQLLLKGLSFEGLMKR
                     YPNDEQAFDGFIMAQQLPEPLASQFAAMNRGDVTRDPVKLGERYYLFKLSEVGKNPDA
                     QPFELVRNQLEQGLRQEKARLKIDAILEENGVKP"
     gene            18288..18779
                     /locus_tag="WHR98_000391"
     CDS             18288..18779
                     /locus_tag="WHR98_000391"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HEZ2307123.1"
                     /translation="MRAVIQKTVGAKVDVVSENGTETCGKIDGGFVVLLGVTHSDIEK
                     DARYVADKIAHLRVFEDEAGKLNLSLKDVGGSVLLVSQFTLYADAASGRRPSFSKAAP
                     AEQAKRLYLHTAELLRGHGIHVETGRFRTHMQVSLCNDGPVTILLDSFMTRISPKMKV
                     VPD"
     gene            18810..19820
                     /gene="dusA"
                     /locus_tag="WHR98_000392"
     CDS             18810..19820
                     /gene="dusA"
                     /locus_tag="WHR98_000392"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HEZ2307124.1"
                     /translation="MNDNTHTLPPRRLSVAPMLDWTDRHYRYLARQITRNTWLYSEMV
                     NAGAIVYGDKDRFLMFNEGEQPVALQLGGSDPSDLAKAAKAAEAYGYNEVNLNCGCPS
                     PRVQKGSFGACLMNEVGLVADCLNAMQDAVGIPVTVKHRIGVDRQTEYQTVADFVGTL
                     RDKTACKTFIVHARNAWLDGLSPKENRDVPPLKYDYVYRLKQEFPGLEIIINGGITTN
                     EAIAGHLQHVDGVMVGREAYHNPMVMREWDRLFYGDTRSPIEYADLVQCLYTYSQAQI
                     QAGRGTILRHIVRHSLGLMHGLKGARTWRRMLSDAMLLKDNDGGLILEAWEEVERANT
                     RE"
     gene            complement(19888..20775)
                     /gene="gluQRS"
                     /locus_tag="WHR98_000393"
     CDS             complement(19888..20775)
                     /gene="gluQRS"
                     /locus_tag="WHR98_000393"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HEZ2307125.1"
                     /translation="MYTGRFAPSPTGLLHIGSLLTAVASYADARSNGGKWLVRMEDLD
                     PPREMPGAASHILHTLEAFGFEWDGEVAYQSRRYALYEETLCRLKTAGLVYPCHCSRK
                     DWQAAAVHGADGFVYNGRCRNPQQRPAPQGKQPAWRIRVPDRDIGFSDGIVGGYAQNL
                     ARDIGDFVLLRADGYWAYQLAVVADDAEQGVTHIVRGQDLLVSTPRQIYLQQCLGVPT
                     PQYAHLPLLTNAQGQKWSKQTLAPALDLNRREQLLRQVFRYLKLPEAPEADRPAELLD
                     WAVAHWDMDKVPKHAITTP"
     gene            complement(20792..21082)
                     /locus_tag="WHR98_000394"
     CDS             complement(20792..21082)
                     /locus_tag="WHR98_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307126.1"
                     /translation="MAKALEIISPNEIYSDLIFKDPVPPHTIYTELMKLVSRNASNER
                     IADRAFDFFSSGLMDGSATEEQYNALYDLTLLEEPGMELNKDEIMALINSLK"
     gene            complement(21236..22291)
                     /gene="tal"
                     /locus_tag="WHR98_000395"
     CDS             complement(21236..22291)
                     /gene="tal"
                     /locus_tag="WHR98_000395"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEZ2307127.1"
                     /translation="MTILSDVKALGQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNP
                     AIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVRAACGVCLAEHESTGGKTG
                     FVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVN
                     LTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIHVVASFFISRVDSALDTTLPDRLK
                     GKIAIALAKAAYQDWEQYFTAPEFAALEAQGANRVQLLWASTGVKNPAYPDTLYVDSL
                     IGAHTVNTVPDATLKAFIDHGTAKATLTEGVEEAQAQLAETAALGIDVETLATRLQED
                     GLKQFEEAFEKLLAPLV"
     gene            22387..>23356
                     /locus_tag="WHR98_000396"
     CDS             22387..>23356
                     /locus_tag="WHR98_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEZ2307128.1"
                     /translation="MAENGKYLDWAREVLHTEAEGLREIAAELDENFALAADALLHCK
                     GRVVITGMGKSGHIGRKMAATMASTGTPAFFVHPAEAAHGDLGMIVDNDVVVAISNSG
                     ESDEIAAIIPALKRKDITLVCITARPDSTMARHADIHITASVSKEACPLGLAPTTSTT
                     AVMALGDALAVVLLRARAFTPDDFALSHPAGSLGKRLLLRVADIMHKGGGLPAVRLGT
                     PLKEAIVSMSEKGLGMLAVTDGQGRLKGVFTDGDLRRLFQECDNFTGLSIDEVMHTHP
                     KTISAERLATEALKVMQANHVNGLLVTDADGVLIGALNMHDLLAARI"
BASE COUNT         5217 a         5978 c         6688 g         5473 t
ORIGIN      
        1 gctgtacagg tataacaatg aataaatttg gggataaggt cgtatgagcg taggtttgct
       61 gaggattctg gttcaaaacc aggtggttac tgttgagcag gccgagcatt actacaatga
      121 gtcgcaggcg ggtaaggaag tgttgccgat gctgttttca gacggtgtca tttcgcccaa
      181 gtcgcttgcg gcattgattg cgagggtgtt cagttattcg attcttgatt tgcgtcatta
      241 tccgcgccac agggtgctga tgggggtgtt gacggaggag cagatggtgg agttccactg
      301 tgtgccggtt ttccgtcggg gcgacaaagt attttttgcg gtttccgatc cgacacagat
      361 gccgcaaatt cagaaaaccg tttctgccgc agggattgag gttgagttgg tcattgtcga
      421 ggatgaccag ttggcgggtt tgctcgattg ggtgggttcg cgttcgacat cgctgcttca
      481 ggagcttggg gaggggcagg aggaagagga aagccacacc ctgtatatcg acaacgagga
      541 ggcagaagat ggccctgttc cgaggtttat ccataagact ttgtcggatg ccttgcgcag
      601 cggggcatcg gacatccatt tcgagtttta cgaacacaat gcccgtatcc gtttccgtgt
      661 ggacgggcag ctccgcgagg tggttcagcc gcccattgcg gtaagggggc agcttgcttc
      721 ccggattaag gtaatgtcgc gtttggacat ttccgaaaaa cggataccgc aggacggcag
      781 gatgcagctg acctttcaaa agggcggcaa gcctgtcgat ttccgtgtca gcacattgcc
      841 gacgctgttt ggcgaaaagg tcgtgatgcg gattttgaat tccgatgccg cgtctttgaa
      901 catcgaccag ctcggttttg agccgtttca gaaaaaattg ttgttggaag cgattcaccg
      961 tccttacggc atggtgttgg taaccggtcc gacaggttcg ggaaagactg tgtcgctcta
     1021 tacctgtttg aatattttga atacggagtc ggtaaatatt gcaacggcgg aagaccctgc
     1081 cgagattaac ctgccgggca tcaatcaggt taacgtcaat gataagcagg gcctgacttt
     1141 tgccgctgct ttgaagtctt tcctgcgtca ggacccggac atcattatgg tcggtgagat
     1201 tcgtgatttg gaaactgccg atattgcgat taaggcggca caaacagggc atatggtgtt
     1261 ttccaccctg cacaccaata atgcgccggc gacgttgtcg cgtatgctga atatgggtgt
     1321 cgcgccgttt aatattgcca gttcggtcag cctgattatg gcgcagcgtc ttttacgcag
     1381 gctgtgttcg agctgcaaac aggaagtgga acgcccgtct gcctctgctt tgaaggaagt
     1441 cggcttcacc gatgaggacc ttgcaaaaga ttggaaactt taccgcgccg tcggttgcga
     1501 ccgttgccgg gggcagggtt ataaggggcg tgcgggcgtg tatgaggtta tgcccatcag
     1561 cgaagaaatg cagcgtgtga ttatgaacaa cggtacggaa gtggatattt tggacgttgc
     1621 ctataaggag ggtatggtgg atttgcgccg ggccggtatt ttgaaagtta tgcagggcat
     1681 tacttcattg gaagaggtaa cggcaaatac caacgattag gtttgagaat gaaaatgccg
     1741 tctgaagcgt gtttgtttca gacagcattt gactttcagg gtgtttgccg ggaaggcggg
     1801 gcggtcagcg gtatgccatg tcgggttcgg atatttccgg caaactttcc gtttggccgg
     1861 aaaccgtata tttcccgtct gcccatccgc ccaagtcgat cagtttgcag cgttgcgaac
     1921 agaaggggcg gaatgcgttt tcgggttccc atactactgc cgtttgacag gtcggacatt
     1981 tgacctggag gcgtgtttgc cgcgactcag ccattgtgtt ttccttgtgt tggttttgag
     2041 gcgaaaatcc ctgaataaaa cgcgtgcagg cgcattgttt tctcacgcag gcttttgagg
     2101 ctgccgtcat tgagcagcac atcgtctgca agcagcaggc gttcggattc ggatgcctga
     2161 tggctgatga cggcagccac ctcgccgcgc gtcagcccgc tgcgggccat caccctgccg
     2221 atacgttttt ccacaggggc acttatggtc aggacacgcc gtatcaggat gataaattga
     2281 cgcttttccg tcagcagcgg aatttcgaca atgccgtaag ccgcatcggt aaaggtttct
     2341 tgctgttttt tgatttctga gaaaatcagc ggcaacatca cggattcgag caaggctttt
     2401 cgcgatgggg aggcaaagac ttctttacgc aatatgtcgc gtcgcaacaa accctgtgtg
     2461 tcgaaaacgg tgtcgccgaa cagccgcctg atttccggca gggcgatgcc gtctgaagcc
     2521 gtcagcgagt gcgccgccgc gtccgcatcg atgcgcggca cgcccaaatc ggcaaaacat
     2581 tgcgcggctg ccgacttgcc gctgccgatt ccgccggtca gcccgaccca taccgtcatc
     2641 ttacagcacc ggatgggtca gccaccagtt gaccgcccgc catacggaat cgtttgccgt
     2701 aaaaattatc cagcccgaaa ctgtcagtgc ggggccgaag gcaaaatgct gccccttggc
     2761 gacgcgcata acgattgccg cgaccaaacc gatcagcgag gaaacaaaaa tcagcacggg
     2821 caatgcggat atgccgagcc acgcgcccaa tgcggcaatc agtttgaaat ctccgttgcc
     2881 cataccgatt tcgcctttaa tcagtttata taccgcgcat aaaagccata tcgaaccata
     2941 gccggcaacc gcacctaaaa cggcagactg caaaggcacg aagccgccgt ccaaattaaa
     3001 tatcagcccc agccaaatca agggtaatgt catcgagtcg ggcaggtatt gggtgtccgc
     3061 atcgataaag gtcagggaaa tcagaaacgc ggtcagtatc aaaccgccca atgtaatcca
     3121 agaccagccg tattgccagg caaccagccc gaacaatacg ccggtcagca gttcgattaa
     3181 gggatagcgt atgctgattt tggtttggca ggaggcgcat ttgccgcgca ggagcaggta
     3241 gctgacaatc gggatgttct gccacgcgcg tatcggcacg cggcatttgg gacagcagga
     3301 atccggtttc atcaggttga aggtacggct ttcctcttcg gtcagcggca ggtttaaata
     3361 ttctttggca aataccgtcc agccgcgttc catcatgacc ggcacgcggt aaatgacgac
     3421 atttaagaaa cttccgacca gcagcccgaa caccgctgcc aaaggcacgg caaacggcga
     3481 caatacagac aaatcagaca tattttgttc tcaatgtatt caaaacaaaa acaaaccggc
     3541 gcagagcgaa tccgcgccgg atctgtgcgg caaatcaggc gaccacgttg cccaaattaa
     3601 acagcggcag atacatggcg accagaagcg tgccgatgac caagcctaaa atcacgataa
     3661 tgatcggctc catcatagcg gacagcctgc cgaccgcatt gtccacctcg tcttcgtaaa
     3721 attcggcggc tttgttgagc atatcgtcca aagaacccga ttcctcgccg atggaagaca
     3781 tctgcaacat catattgggg aacagttccg tcgcacgcat ccccgaagtc atagacaaac
     3841 cttggatgac gcgcgtacgg atttcccggg tggcttcttc atagattaaa ttgcccgccg
     3901 cgccggcagt ggagtccaat acatcgacca aaggcacgcc tgccgcaatc agcgtcgccg
     3961 tcgtcctgcc ccagcgggca atcgtccctt tgcggacaat gtctccgaaa atcggcatac
     4021 gcagcagtat ggcatccata cgccgttgga ttttaatcga acgcgccttc aatttaagga
     4081 agccgtatat ggcaaagccc agtgcgatca gcaccatcca gccgtatgag acgaaaaagt
     4141 cggacatatc catcactgtt tgggtcagtg ggggaagctc cgcgcccata ttggcgtaaa
     4201 cttctttaaa ggcgggcagt acgaaaatca tcatcacgaa taccaaaccg atggcgacgg
     4261 cgatgacgga taccggatag gtcagcgcgg tttttacctt tttgcggatg gcctgggttt
     4321 tttctttgta aattgccaat ttgtccagca ggctttccaa tacgccgccc gtttcgcccg
     4381 ccgcaaccag gttgcagtag aagcggtcga aatatttcgg gtggtttgag aatgcgcggc
     4441 tcaacgagct gccctgttcc acttcgcctc ggatttccat cagcatttcc gtcatagacg
     4501 ggttgccgtg tccgcgcgcc acgatttcaa atgcctgcat cagcggcagg cccgctttaa
     4561 tcatcgtgga aagctggcgg gtgaaaacgg tgatgtcttc ttgtgtgatt ttgcgcttgg
     4621 agcttgtttt cacacgggta atctgcaacg ggcggatgcc gcgttttgcc agttttttgc
     4681 gcgcctcttc ttcggtaaac gcggatactt cgccgttgac cagtttgtcg gaggcggaat
     4741 gcctgccttc aaagataaag cgtttttctt tctttgcgaa caaagaaaat cctccgtttt
     4801 tagccatatt ctagccccgt aaagtaattg gaataaaatg taagaaacat cgttaaaaaa
     4861 cagtaccggc gtgttcccgg taagatgaaa accgccgaca tcccgcctgc gggcggcaaa
     4921 cgggacagaa tcggatgcga ttatacctta tttaggcggc tgtccggcat ttatgcgtac
     4981 acaataaatc ttgcaggata ttgttgcggg tcaaatgccg gccggagggt atagtgaatt
     5041 aacaaaaacc ggtacagcgt tggctcgcct tagctcaaga gagaacgatt ctctaaggtg
     5101 ctgaagcacc aagtgaatcg gttccatact atttgtactg tttgcggctc gccgccttgt
     5161 cctgattttt gttaattcac tatattttcg ccatatggaa ataaggtgct attggacgcg
     5221 gcgggcggtg ttccggagat tcgccaaagc cgctgccgtt tgttaaacta cattctgcta
     5281 cattttaatc cggttctgaa aaatcaagga aaacagatga atgcttttac ccgtgcatgg
     5341 tatgcgctcg aacgccatta tcaggatacg cgtcatgtcc ttttgcgcga ccgctttgcc
     5401 tgcgaacccg accgttttga gcgtatgcat gagcgtttgg acgggatgtt gttcgattac
     5461 agcaaaaacc gtttgggcga agatacgctg caactgctct gccgtcttgc ggagacggcg
     5521 gatttggaag ggaaaatgcg tgctttgcgg acgggtgcga aagtcaacgg cagcgagggg
     5581 cgtgccgcgc tgcatacggc tttgcgccta cccgacggtg cggatgccgt ttatgcggac
     5641 ggcagggacg tgttgcccga aatccgccgc gagttaaatc gtgcgttgga gtttgcacac
     5701 agtttggacg acggttcgta tcaggggaca accggaaaac ggattacgga ttttgtccac
     5761 atcggcatag gcggatccga cctcgggccg gcaatgtgcg tgcaggcact tgagccgttc
     5821 agacggcata tcaccgtcca ttttgccgcc aacgccgatc ctgcctgcct ggatgcggtt
     5881 ttatgccgtc tgaaccccga aacgacagtg ttttgcgttg ccagcaagtc cttcaaaaca
     5941 ccggaaaccc tgctcaatgc acaggcagtc aaggcgtggt atcgcggtgc ggggttctcg
     6001 gaatccgaaa cggcgtgcca tttttgcgcg gtgtctgccg acactgcggc agctgcggct
     6061 tttggtatcg cggcggaacg cgtgtttgcg atgtacgact gggtgggcgg acgctattcc
     6121 gtctggtcgc ccgtcggttt gcccgtgatg gttgcggtcg gcggggcgcg tttccgcgag
     6181 ttgttggcgg gggcgcacgc gatggacagc cattttttcc acacgccgcc gcgccgcaac
     6241 attcccgttc tgatggcact gattgccgtg tggtataaca atttccaaca cgcggacggg
     6301 cagaccgccg ttccgtacag ccacaacctg cgcctgctgc cggtgtggct gaaccagctt
     6361 gatatggaga gtttgggcaa aagccgcgct tcagacggca gtcccgccgt gtgcaaaacg
     6421 ggcggcatcg tgttcggcgg tgaaggggtc aactgccagc acgcctattt ccaactgctc
     6481 caccaaggca cgcgcctgat tccctgcgac tttatcgtcc cggtgacggc gcagggcgtg
     6541 gaggacggac gcagccgttt taccgttgcc aacgcctttg cccaagcgga agccctgatg
     6601 aagggcaaaa ccttggacga agcacgcgcc gaactggcag atttgcccga agcggaacgc
     6661 gaacgcctcg cgccgcacaa agaattcccc ggcaaccgcc ccagcaacag catcctgctc
     6721 gaccgcctca cgccctacaa tctgggtatg ctgatggcgg cttacgaaca caaaactttc
     6781 gtccaaggcg cgatatggaa cgtcaacccc ttcgatcagt ggggggttga gtacggcaaa
     6841 cagttggcga aaaccatcat cggcgaactg gaaggcggca cgtccgtaca cgatgcctcg
     6901 accgaagggc tgatggcgtt ttaccgcgaa tgccgtctga aaggcggcgg tgcggcataa
     6961 aggtactgcc gcccgcccga ttccgaaacg ccaatgttcg gcaaccgccc gcgtattgct
     7021 gacgaatatg cgtttgcgtg gcacaatagc gcattcattt caaatgaaca tactgcttga
     7081 aaataccggc aagcgtccca cgaaacatct cacataagga aacattatgt ctttgcaaaa
     7141 cattatcgaa accgcctttg aaaaccgcgc ggacattaat ccgaccaccg ttactcccga
     7201 agttaaagaa gccgtgttgg aaaccatccg ccaactcgat tccggcaaac tgcgcgtcgc
     7261 cgaacgcttg ggcgtgggcg aatggaaagt taacgaatgg gcgaaaaaag ccgtgttgct
     7321 gtccttccgc atccaagaca acgaaatcct caacgacggt gtgaacaaat acttcgacaa
     7381 agtgccgacc aagtttgccg actggtctga agacgagttc aaaaacgcag gcttccgcgc
     7441 cgttccgggt gcggttgccc gacgcggcag ctttgtggcg aaaaatgtcg tgctgatgcc
     7501 gtcttacgtc aacatcggcg catacgttga cgaaggtgcg atggtcgata cttgggcgac
     7561 cgtcggctct tgcgcgcaaa tcggcaaaaa cgtccacttg agcggcggtg tcggcatcgg
     7621 cggcgtactc gaacccctgc aagccagccc gaccattatt gaagacaatt gcttcatcgg
     7681 tgcgcgttcc gaaatcgttg agggcgtgat tgtcgaagaa ggcagcgtga tttctatggg
     7741 cgtgttcatc ggtcaatcca ccaaaatctt cgaccgcacc accggcgaaa tctaccaagg
     7801 ccgcgtaccg gccggttcgg tcgtcgtgtc cggcagtatg ccttccaaag acggcagcca
     7861 cagcctttac tgcgccgtca tcgtcaaacg cgtggacgcg caaacccgtg cgaaaaccag
     7921 cgtgaacgaa ttgttgcgcg gcatctgatg ccttaaaccg tatttgaaac gtccgatgcc
     7981 gtctgaaatc cgcttcggac ggcattgccg tttgcatgct gcaacgtgaa aacacagaaa
     8041 cagggacaat ttgctataat caacggttta gaatgaaccg aacactattt gaaggataca
     8101 aaatgggctt tctgcaaggc aaaaaaattc tgattaccgg catgatttcc gagcgttcca
     8161 tcgcttacgg catcgccaaa gcctgccgcg aacaaggcgc ggatttggcg tttacctacg
     8221 ttgtagacaa actggaagag cgcgtccgca aaatggcggc ggaattggat tccgaactcg
     8281 tattccgctg cgatgtcgcc agcgacgacg aaatcaacca agtgttcgcc gacttgggca
     8341 aacattggga cggcttggac ggtttggtgc attccatcgg ttttgcgccg aaagaagcct
     8401 tgagcggcga cttcctcgac agcatcagcc gcgaagcgtt caacaccgca cacgaaattt
     8461 ccgcatacag cctgcccgca ttggcaaaag ccgcccgtcc gatgatgcgc ggcagaaact
     8521 ccgccatcgt tgccctgagc tacttgggcg cggtgcgcgc gattccaaat tacaacgtga
     8581 tgggtatggc aaaagccagc cttgaggcgg gcatccgttt taccgccgcc tgtctgggca
     8641 aagaaggcat ccgctgcaac ggcatttccg ccggcccgat taaaacgctt gccgcctccg
     8701 gtatcgccga tttcggcaaa cttttgggac acgtcgccgc ccacaatccg ctgcgccgca
     8761 acgttaccat cgaagaagtc ggcaataccg ccgccttcct gctgtccgac ctgtcgtccg
     8821 gcattaccgg cgaaatcact tacgttgacg gcggttacag catcaatgcc ttgagcaccg
     8881 agggataatc tgccgttttc aaatccgtgc gccgtccgtg ccgcatatcg gtttcgggcg
     8941 gcgttttgcc gtctgaagcg tatttctagg gaaatgcccg acttacggca ggcgggatgg
     9001 gaaatgcgga cgcttgtttt aaccgattgc ctttgtgccg acttgctgca ggtgcagcgg
     9061 aaacggttcg gatgcgaaaa tgccgtctga aacgccaaac gggtttcaga cggcattttt
     9121 tatttaaagc atcagcacac ttcaaccagc cagccgtatt tgtcttccgc caaaccatac
     9181 tggatgtcgg taatcgcctt acggatggca tagccgcgtt cttggctttt cacttcgatt
     9241 tctttgccgc cgatgacgaa ggaagtaacg ggcgagatga cggctgccgt accggtcaga
     9301 atcgcctccg caccgttttc caccgcagct ttgagttcgt caaccgtgaa attgcgttcg
     9361 ctgacggtat agcccaaatc tttggcaacc gtcagtacgg aatcgcgggt tacgccgtgc
     9421 aaaaattcgt cggtcagcgg tttggtaatg atttcatcgc cgttaatcag gataaagttg
     9481 gacgcgccgg tttcctgcac gtcgccgttc gggcagaaca gcacttggtt tgcgccgtat
     9541 tcggctttcg ccttcagcac ccagtgcatg gcagaagcgt agttgccgcc gcatttgacg
     9601 cggcccatgt gcggggcgca gcggatatgt tcggtttcca ccaagatttt aacgggcgag
     9661 ccgactttga aatagtcgcc gacgggggaa gccaaaatat acagcagggc ggtttcggac
     9721 ggcgagcctg ccttgccgat gacgggatcg gtaccgatta aggtcgggcg caggtacagg
     9781 gcggcaggcg catcgggaat ttcgtcggcg gcacgtttga ccagttcgac caaagcatcg
     9841 agataggctt gggtttcggg gcggggcagg tgcaaaatgt ccgcactttg ccgcatacgc
     9901 gcgatgttgg cagtcggacg gaacagcacg attttgccgt ctgcctgacg gaaggctttc
     9961 agtccctcga aacattcgct gccgtagtgc agggcgtgcg cacccggtgc gagggagagg
    10021 tcttgggaag attgccattc ggtcggctgc catttgcctt cgcggtaggc gaggacgggc
    10081 atttgactgt gaaaaacgct gccgaatacg gcgggtacgg gtctgctcat gatgtaaagc
    10141 ctttcttatt ctgatatgtt tcaatgaacg gtttgaattt gaagattgta aagatacgcc
    10201 tgcaaacagg gttttgacaa gtgcgcggcg ggtttttctg tcgatgcggt gtccaatccg
    10261 ttatttttca aatggaaagg aacggtgtat ttggtaaaat tgtcggcaat cgcatactcc
    10321 gtatgtcgtc cgaacacgct gccgcatcct atccgaaacc gtgcaaatcg tttaaactag
    10381 cgcaatcttg gttcagagtg cgaagctgtc cgggcggcgt ttttatttac ggagcaaaca
    10441 tgaaacttat ctataccgtc atcaaaatca ttatcctgct gctcttcctg ctgcttgccg
    10501 tcattaatac ggatgccgtt accttttcct acctgccggg gcaaaaattc gatttgccgc
    10561 tgattgtcgt attgttcggc gcatttgtag tcggtattat ttttggaatg tttgccttgt
    10621 tcggacggtt gttgtcgtta cgtggcgaga acggcaggtt gcgtgccgaa gtaaagaaaa
    10681 atgcgcgttt gacggggaag gagctgaccg caccaccggc gcaaaatgcg cccgaatctg
    10741 ccaaacagcc ttgagaaagc cgatatggac aatgaattgt ggattatcct gctgccgatt
    10801 atccttttgc ccgttttctt cgcgatgggc tggtttgccg cccgcgtgga tatgaagact
    10861 gtattaaagc aggcaaaaag cataccgtcg ggattttata aaagtctgga tgccttggtt
    10921 gaccgcaaca gtggacgtgc tgccagggaa ttggcagagg tcatcgatca gcagcctcag
    10981 tcatacgacc tgaacctcac cctaggcaag ctttaccgtc agcgtggcga aaacgacaaa
    11041 gccatcaata tgcaccaaac attgcttgac tctcccgata caaccggagc caagcgtgcg
    11101 cgcgtgttgt ttgaattggc gcaaaactat caaagtgcgg ggttggttga tcgtgccgaa
    11161 cagattttcc tcagtctgca agacggtgaa atggcgcgtg aagccagaca gcacctgctc
    11221 aatatctacc agcaggacag ggattgggaa aaagcgattg aaaccgccca actcctcagt
    11281 cacgacgaac agacctatca gtttgaaatt gcccagtttt attgcgaact tgcccaagcc
    11341 gcgctgttca agtccaattt cgatgtcgcg cgtttcaatg tcggcaaggc actcgaagcc
    11401 aacaaaaaat gcacccgcgc caacatgatt ttaggcgaca ttgaatacag gcagggcaat
    11461 tttcctgcat cggttgaagc gtatgccgcc atcgagcagc aaaatcatgc ctatttgagc
    11521 atggtcggag agaaacttta tgacgcttat gcggcgcaag gaaagcctga agaaggatta
    11581 aatcgcctga tagggtatat gcagaccttc ccggaacttg atttgattaa cgtcgtgtac
    11641 gagaaatcct tattgctcag gggggagaaa gaggctgcac aaactgctat cgagcttgtt
    11701 cggcgcaaac cggacttgaa cggtgtttac cgcctgctcg gtttaagaat cagcgatatg
    11761 gatccgactt ggaaagccga tgccgatatg atgcgttcgg ttatcggacg gcagctacag
    11821 cgcagcgtga tgtaccgttg ccgcaactgc cacttcaaat cccaagtctt tttctggcac
    11881 tgccccgcct gcaacaaatg gcagacgttt accccgaata aaatcgaagt ttaaccacca
    11941 ccgaaaggaa cacaaaaaat gcgcttactc catactatgc tccgcgtggg caatctcgaa
    12001 aaatccctcg atttctacca aaacgttttg ggtatgaaac tgctccgccg aaaagattat
    12061 cccgaaggca gatttaccct tgccttcgtc ggttacggcg atgaaaccga cagcacggtt
    12121 ttggaactga cgcacaactg ggatacggaa cgatacgact tgggcaacgc ctacggacac
    12181 atcgcggttg aagtggacga tgcctacgaa gcctgcgaac gtgtgaagcg gcagggcgga
    12241 aacgtcgtcc gcgaagccgg cccgatgaaa cacggcacaa ccgtgatagc cttcgtcgaa
    12301 gaccccgacg gatacaaaat cgagttcatt caaaagaaaa gcggcgacga ttcggttgcc
    12361 tatcaaactg cctgataccg ccgccgccaa tgccgtctga agcctttagg ggtttcagac
    12421 ggcattttgt tgccgtcggc ctgctgtttg agcctgtgcc ggttcaaact ttatccgtta
    12481 caccgataag gcaaaaaaag atgccgtctg aaacggcatc cttgatctgc gaaagggcag
    12541 ttgggaatca aatacccaat tcctgcgcca atgcttgggc acgtttgagt acgtcgcctt
    12601 ccgcttcttc cagcaatttc tgcactgtct cggcagcggc atcgcggtcg ccgatttcga
    12661 gatacatttc ggcaaggtcg tatttcgctt cggaaggcgc gtcagaacct acagattccg
    12721 aagggaaact ggtatctgca ttatttggga tattttcttc cgagaggtag atgctccaat
    12781 ctaccgtttc ctcctcgccg tctttcagga agtcgggcaa agcgtctgcc tcagaggtgt
    12841 tggaatcagg cgtttccaaa gtgatttccg ctgcattttc ctcaacggcc ggtacttcag
    12901 caggttgcaa cagtgcggac aaatcatcgg caacggtttc cgctgcattt tcctcaacgg
    12961 caggtacttc agaaggttga agtaatgcgg acaaatcgtc tgcggtggcg ttgaaatcgg
    13021 gtgtttcggc aacggtttcc gttatatttt cctcaacgga cggtgcttcg gcaggttgaa
    13081 gcaatgcgga caaatcgtct gcggcggcgt tgaaatcggg cgtttcggca acggtttctg
    13141 ctgcggtttc cccaacgtca ggcgtttcaa acggttgcag cagcgcggac aaatcatcgg
    13201 caacggtttc cgttacattt tcctcaacgg ccggtgcttc ggcaggttga agcaatgcgg
    13261 acaaatcgtc tgcggcggcg ttgaaatcgg gcgtttcagg cgcagtttcc gcgacggcat
    13321 cggtttcgta cactttcagg aaatcgtgca actcttccgg tgtttggact tcggcaactg
    13381 ttttttccaa gatggtttcg ggcgaggaag ccttcaggaa gcctgccagt ccggagggtg
    13441 aggcaggttt tgcggaagct gtttcttctg tgccgatatg gttgtttgag ggcaggttgt
    13501 cggagaaatc ggtatcgacg gtttccggtt tgttttcggc agtttgggcg acagattccg
    13561 gttcgggcgt gtcgatgacg atttcgacag ggttgtacgg gttgaaggtc tcgggctcgt
    13621 acacgctgtc tgtggattcg atggcgttcc aatcggcatc cgcgcgtttt tgggtttctt
    13681 catcctgcgt aagtgcgccg gataaaatgc cgttttgcgc ggctgccagg ctgtcgaaat
    13741 ccaagtcgat gcggttggaa ggcgtatcgg tttcgacatc gaacgtttgt tttgccgaca
    13801 actcttcttc agattcccca tctaaggcaa gtgtgtcgtt tacatcgttt ttcggagcgg
    13861 gttcgggcgt tgccggagtt tcgacttcgg caaaggtgat ttctatgccg tcgtctgccg
    13921 cgtcgtcaag gtcaggctct tcctcaggga cggattcttc ggtacggcgc gcgcgtttgg
    13981 attgggcaag gcgcaaaagc agcagcaggg cgattaatgc cgcgcctccg ccggcaagca
    14041 gcaaggtgta cgaaccgccg aacagtccgc tttcggtttc ttcttcggca gaaacctgtt
    14101 cgacaggttc ggaaacggcg ttaccggttt cgtcggtcgg cgtgtcgatg gcagaagcgg
    14161 cggcttcttg gggggcggat tcggcagcgg tttccgatgc ggcagtattt gcagcgggta
    14221 caggttcggg tcgaacggcc ggtttttccg cttttgcttc gggcgtggca acttttgctt
    14281 caggtttttc aaccggtttc tctaccgttg cctgtttgga cggttcggac ggcatggatg
    14341 cggtttcggc tttgggtttc gccgtttgcg gtttgggttg ttccgctttg atcctgttca
    14401 gattcggaat gtgaagcacg ctgcccgcac gcagtctgcc gtgtgcggaa acattcgggt
    14461 ttgccttcag cagcgcatcg gcaacctgtt cgagcgtcag gtgtttcgga cggatggcgg
    14521 cggcaatctg tttgaccgtt tcgcctttgc ggacggtatg ggttttgccg ttgtacgccg
    14581 gtttgacggc tgcgttcgcg ctgtcttttt tatcggtttt gcggagggct ttggcgtttt
    14641 gattttcttg ggactctgct gtcggagcgg ttttgcggtg tgtcttgccg tctgaaagtg
    14701 cagatttggt tttgggcgag tagccgacag gatcgaggat ggcggtgtat tcgcgtacct
    14761 gcgcgcctgc accgatgcgg aacactagga cgggatcgcg gactgcctgt gcggaagaaa
    14821 cggcaatgac ggctttgtcg cccaacttgt ggactttggc ggtcaggcct ttttcggaaa
    14881 cggtaacgct gccgccgcct agcagggctt tggcttcttc gccggttacg gtaatgctgc
    14941 cggaaaaggg ttcgtcaagg ttggactgga tattcagtcc gcccagtcca gcatgtgcct
    15001 gaaaggatgc ggcaactgcg acggaggcgg caatcagttt gatttgtctg ttgtttttca
    15061 agatgtatcc cctgtgggtt ggcggctgaa tacggtttga ccgcgtacag tctgtaaatt
    15121 tcgtcatcat cgggcatcgg cggggcagtc ggccggcggg catttaatat gtgaatgtac
    15181 cgaccgccgc cacattttaa acggcaatca ttcgccgttt ttacaaatta tgacatatct
    15241 ccatcttttt tcaaaaacat ctgtgcatat ttgcatcaat caaaacaaaa tttgttggtt
    15301 ttgcaggtgc aaaaacaggg ttctgcctgt atgattagcg tttatttgat ttgctttctc
    15361 atttggatat gaaattcgtc agcgaccttt tgtctgtcat cttgtttttt gctacttata
    15421 ccgttaccaa aaatatgatt gccgctacgg cggttgcctt ggttgccggt gtggttcagg
    15481 cggcttttct gtattggaaa tataaaaagc tggatacgat gcagtgggtc ggactggtgc
    15541 tgattgtcgt attcggcggc gcaaccattg ttttgggcga cagccgcttc attatgtgga
    15601 agccgagcgt tttgttttgg ctgggcgcgc tgttcctgtg gggcagccac ctcgccggta
    15661 aaaacggctt gaaggcgagt atcggcaggg agattcagct tccggatgcc gtatgggcga
    15721 aattgacgta tatgtgggtc ggtttcctga tttttatggg tatcgccaac tggtttgtgt
    15781 ttacccggtt cgagtcgcaa tgggtcaact ataaaatgtt cggttcgact gcactgatgc
    15841 ttgttttctt tattattcag ggtatttatc tgagtacctg tctgaaaaag gaggattgac
    15901 tgtggaatat tttatgttgc tggcaacaga cggggagaat gtgtatgaag cgcgtatggc
    15961 ggcacgtccc gaacacctca aacggctgga gacgctgaag tcggaaggcc ggctgttgac
    16021 ggcaggcccg aatcctttgc cggaggactc caaccgcgtt tcgggcagtt tgattgtggc
    16081 gcagttcgag tctttggatg cggcagaggc gtgggcggaa gacgatccct atgttcatgc
    16141 aggcgtgtac agcgaagtgc tgatcaagcc gtttaaagcg gtgttcaaat aatgccggcc
    16201 gtcgatttga tccgcgaacg cctgcagacg ctcgatccgc tggtgttgga aatcggcgat
    16261 gagagccatc tgcacaaagg acacgcgggc aataccggcg gcggacatta tgccgttttg
    16321 gtcgtcagcg gccgttttga aggcgtaagc cgcctgaacc gccagaaaac ggtcaaatcg
    16381 ctgctcaaag atttgttttc aggcggcatg attcacgcgc tcggcatccg ggcggctacc
    16441 cctgacgagt atttccatac ggcggactga atgaagtctg cccgaacatt tcaatttaaa
    16501 atttaaagag agaagattat gaaagcaaaa atcctgactt ccgttgcact gcttgcctgt
    16561 tccggcagcc tgtttgccca aacgctggca accgtcaacg gtcagaaaat cgacagttcc
    16621 gtcatcgatg cgcaggttgc cgcattccgt gcggaaaaca gccgtgccga agacacgccg
    16681 caactgcgcc aatccctgct ggaaaacgaa gtggtcaaca ccgtggtcgc acaggaagtg
    16741 aaacgcctga aactcgaccg gtcggcagag tttaaaaatg cgcttgccaa attgcgtgcc
    16801 gaagcgaaaa agtcgggcga cgacaagaaa ccgtccttca aaaccgtttg gcaggcggta
    16861 aaatatggct tgaacggcga ggcatacgca ttgcatatcg ccaaaaccca accggtttcc
    16921 gagcaggaag taaaagccgc atatgacaat atcagcggtt tttacaaagg tacgcaggaa
    16981 gtccagttgg gcgaaatcct gaccgacaag gaagaaaatg caaaaaaagc ggttgccgac
    17041 ttgaaggcga aaaaaggttt cgatgccgtc ttgaaacaat attccctcaa cgaccgtacc
    17101 aaacagaccg gcgcgccggt cggatatgtg ccgctgaaag atttggaaca gggtgttccg
    17161 ccgctttatc aggcaattaa ggacttgaaa aaaggcgaat ttacggcaac gccgctgaaa
    17221 aacggcgatt tctacggcgt ttattatgtc aacgacagcc gcgaggtgaa agtgccttct
    17281 tttgatgaaa tgaaaggaca gattgccggc aaccttcagg cggaacggat tgaccgtgcc
    17341 gtcggtgcac tgttgggcaa ggcaaacatc aaacctgcaa aataattctg aaaacgggat
    17401 acggcggcaa gacgttcaga caggcgtttt gccgccgcgc aggacaggga ataccatgaa
    17461 acagaaaaaa accgctgccg cagttattgc tgcaatgttg gcaggttttg cggcagccaa
    17521 agcacccgaa atcgacccgg ctttggtgga tacgctggtg gcgcagatca tgcagcaggc
    17581 agaccggcat gcggagcagt cccaaaaacc ggacgggcag gcaatccgaa acgatgccgt
    17641 ccgtcggctg caaactttgg aagttttgaa aaacagggca ttgaaggaag gtttggataa
    17701 ggataaggat gtccaaaacc gctttaaaat cgccgaagcg tctttttatg ccgaggagta
    17761 cgtccgtttt ctggaacgtt cggaaacggt ttccgaaagc gcactgcgtc agttttatga
    17821 gcggcaaatc cgcatgatca aattgcagca ggtcagcttc gcaaccgaag aggaggcgcg
    17881 tcaggcgcag cagctcctgc tcaaagggct gtcttttgaa gggctgatga agcgttatcc
    17941 gaacgacgag caggcgtttg acggtttcat tatggcgcag cagcttcccg agccgctggc
    18001 ttcgcagttt gcagcgatga atcggggcga cgttacccgc gatccggtca aattgggcga
    18061 acgctattat ctgttcaaac tcagcgaggt cgggaaaaac cccgacgcgc agcctttcga
    18121 gttggtcaga aaccagttgg aacaaggttt gagacaggaa aaagcccgct tgaaaatcga
    18181 tgccattttg gaagaaaacg gtgtcaaacc gtaatggcat ttccaatacc gatgccgtct
    18241 gaagcctttt cagacggcat tgcacgttca ggtaaggagg acggcttatg cgtgcggtca
    18301 tacagaaaac ggtaggtgca aaggtggatg tcgtgtccga aaacggcacg gaaacctgcg
    18361 gcaaaatcga cggcggattc gtcgtactgc tcggtgtaac gcatagcgac atagaaaaag
    18421 atgcacgcta tgtcgccgac aaaatcgccc atttgcgcgt gtttgaagac gaagcgggca
    18481 agttgaacct gtctttgaag gatgtcgggg gatccgtgct gctggtgtcg cagtttacgc
    18541 tttatgccga tgcggcaagc ggccggcggc cgtcattttc gaaagccgca cctgcagaac
    18601 aggcaaaacg gctttatctg catacggcag aactgttgcg cgggcacggg attcatgtcg
    18661 aaacagggcg tttccgcacg catatgcagg tgtcgctctg caacgacggg ccggtaacta
    18721 tactgctgga ctctttcatg acgcggattt ccccaaaaat gaaggttgtt ccggattgaa
    18781 attgaatccg caatgatgaa atatcgacaa tgaacgacaa tacacacacc cttcccccgc
    18841 gccgcctttc cgtcgccccg atgctcgact ggacggacag gcactaccgt taccttgccc
    18901 gccagattac ccgaaatact tggctgtaca gcgaaatggt caatgccggt gcgattgttt
    18961 acggcgacaa agaccgcttt ttgatgttca acgaaggcga gcagcccgtc gccctgcaac
    19021 tgggcggcag cgatccgtcc gatttggcga aagccgccaa agccgccgag gcatacggtt
    19081 acaacgaggt caacctcaac tgcggctgcc ccagtccgcg cgtgcagaaa ggctcgttcg
    19141 gcgcgtgtct gatgaacgaa gtcgggctgg ttgccgactg cctcaacgcc atgcaggacg
    19201 cggtcggtat tcccgttacc gtcaaacacc gtatcggtgt ggacaggcag accgaatacc
    19261 aaaccgttgc cgatttcgtc ggcacgctgc gcgacaaaac cgcctgcaaa accttcatcg
    19321 tccacgcccg caacgcttgg ctggacggtc tttcccccaa agaaaaccgc gacgttcccc
    19381 cgttgaaata cgattacgtt taccgcctca agcaggagtt tcccgggctg gaaatcatca
    19441 tcaacggcgg catcaccacc aacgaagcaa tcgccggaca cctgcaacac gttgacggcg
    19501 taatggtcgg gcgcgaggcg taccacaacc cgatggtgat gcgcgaatgg gacagattgt
    19561 tttacggcga tactcgcagc ccgatcgaat acgccgattt ggtgcagtgc ctctacacat
    19621 acagccaagc ccagatccaa gccggacgcg gcacaatctt gcgccacatc gtccgccaca
    19681 gcctcgggct gatgcacggt ttgaaaggtg cgcggacttg gcggcgtatg ctttccgacg
    19741 cgatgctctt gaaagacaac gacggcggcc tgattctcga agcgtgggaa gaagtcgaac
    19801 gggcaaatac gcgcgaatag ggcggggctg tatgtgaaat gccgtctgaa agtttcagac
    19861 ggcatttgtg cgtttgtcgg gcggtgttta gggggtggta atggcgtgtt tcggcacttt
    19921 gtccatatcc cagtgtgcca ccgcccagtc gagcagttcg gcagggcggt cggcttccgg
    19981 tgcttcgggc agcttgaggt aacggaacac ttggcggagg agttgttcgc ggcggtttaa
    20041 atctaatgcg ggggcgagcg tctgtttcga ccacttctgc ccttgtgcgt tggtcagcag
    20101 cggcaggtgg gcatattgcg gtgtcggaac gcccaaacac tgctgcaaat agatttggcg
    20161 cggcgtagaa acaagcaggt cttgtccgcg gacgatgtgg gtaacgccct gttcggcatc
    20221 gtcggcaacg acggcgagct ggtatgccca gtaaccgtct gcacgaagca ggacgaaatc
    20281 gccgatgtcg cgggcgaggt tttgggcgta accgccgacg atgccgtctg aaaagccgat
    20341 gtcgcggtcg gggacgcgga tgcgccacgc aggctgtttg ccttgcggtg cagggcgttg
    20401 ctgcggattg cggcaacgtc cgttatagac gaatccgtct gcgccgtgga ctgccgcagc
    20461 ctgccagtct ttgcggctgc aatggcaggg atagaccagt ccggcggttt tcagacggca
    20521 tagggtttct tcatacaggg cgtaacggcg gctctgatag gcgacttctc cgtcccactc
    20581 gaatccgaat gcctcaagcg tgtgcaggat atggcttgcc gcccccggca tttcgcgcgg
    20641 cggatcgagg tcttccatgc ggaccagcca tttgccgccg tttgagcgtg catcggcata
    20701 ggaagcgacg gcggtcagca gcgagccgat gtggagcagc ccggtcgggc tgggggcaaa
    20761 acgtcctgtg tacatatctg gtacagcccc tttatttaag actattaatc aaagccatta
    20821 tctcatcttt attcagttcc atcccgggtt cttcaagtaa ggttaaatca tatagggcat
    20881 tatattgctc ttcggtagct gaaccatcca taaggccgga cgagaaaaaa tcgaaggctc
    20941 tatctgcgat tctctcatta cttgcatttc tactaaccag tttcatcaat tctgtatata
    21001 ttgtatgggg aggtaccgga tccttaaaaa tcagatctga ataaatttca ttgggtgaaa
    21061 tgatttcgag tgcttttgct atggttctat ttccttttgt gttggcgggt aatgtcgtgc
    21121 attaacttct tgcccattaa tatttttagg gcgaatcctt gatatgccgc actgtgtccg
    21181 gtcaaaaggg cgatgccgtc tgaaagcctt tcagacggca tcggggatga aaagtttaaa
    21241 ccaacggtgc gagcagtttt tcaaacgctt cttcaaactg tttcaaaccg tcttcctgca
    21301 aacgcgttgc caaggtttcg acatcgatgc cgagcgcggc ggtttcggcg agctgcgctt
    21361 gtgcttcttc tacgccttcg gtcagcgtgg ctttggctgt gccgtggtcg ataaaggctt
    21421 tgagcgtggc atcgggaacg gtgttgacgg tgtgcgcgcc gatcaggctg tcaacgtaga
    21481 gcgtgtcggg ataggctggg tttttcacgc cggtagatgc ccataaaagc tgcacgcggt
    21541 ttgcgccttg ggcttccagt gcggcaaatt cgggggcggt gaaatattgt tcccaatctt
    21601 gataggcggc tttggcaagg gcgatggcga ttttgccttt gagccggtcg ggcagtgttg
    21661 tgtccagcgc actgtccaca cgcgagatga agaagctggc gacgacgtgg atatgggcaa
    21721 cgctttgtcc ggctgccaag cgtttggcaa tgccgcgcgc gtaggcggcg taggctttga
    21781 gggtttgggc gcgtgagaac agcagggtca ggttcacgct gatgccgtct gaaacgaggg
    21841 tttcgagcgc atcgatgcct gcgtcggtgg caggcacttt aatcatcgcg tttttgcacc
    21901 cgatggcggc gtagaggcgg cgcgcttctt caaccgtgcc ttgcgcgtct ttggacaatt
    21961 cgggcgaaac ttcgaggctg acgaagccgg ttttgccgcc ggtggattcg tgttcggcaa
    22021 gacagacgcc gcaggcggca cgcacatcgg caaccgccat cgtttcgtag cgttgtttgg
    22081 gggtcaggtc ttgctgcttg agggcggcaa cctcgtcggc ataaagcgcg tcgccggcga
    22141 aggctttttg gaaaatggcg ggattggaag ttacgccgca cacgccttgt ttcaacattt
    22201 gcgccaattc gccgctttgc accagcgagc gggaaaggtt gtccagccag atttgttgtc
    22261 ctaatgcttt aacgtccgat aaaatagtca tttctgattc ctttggatgg atggcggggt
    22321 ttgaatgctt atgctacccc gattcggaaa ttttgggtag ttttgttaca gcaaaggcgg
    22381 atggcaatgg cagaaaacgg aaaatatctc gactgggcgc gcgaagtgtt gcacaccgaa
    22441 gcggaaggct tgcgcgaaat tgcagcggaa ttggacgaaa acttcgccct tgcggcagac
    22501 gcgttgttgc actgcaaggg cagggttgtt atcacgggca tgggcaagtc gggacatatc
    22561 gggcgcaaaa tggcggcaac catggcctcg accggcacac ctgcgttttt tgtccaccct
    22621 gcggaagcgg cacacggcga tttgggcatg attgtggaca acgacgtggt cgtcgcgatt
    22681 tccaattccg gtgaaagcga cgaaatcgcc gccatcatcc ccgcgctcaa acgcaaagat
    22741 atcacgcttg tctgcatcac cgcccgcccc gattcaacca tggcgcgcca tgccgacatc
    22801 cacatcacgg cgtcggtttc caaagaagcc tgcccgctgg ggcttgcccc gaccaccagc
    22861 accaccgccg ttatggcttt gggcgatgcg ttggcggttg tcctgctgcg cgcccgcgcg
    22921 ttcacgcccg acgacttcgc cttgagccac cctgccggca gcctcggcaa acgcctactt
    22981 ttgcgcgttg ccgacattat gcacaaaggc ggcggcctgc ctgccgtccg actcggcacg
    23041 cccttgaaag aagccatcgt cagcatgagt gaaaaagggc tgggcatgtt ggcggtaacg
    23101 gacgggcaag gccgtctgaa aggcgtattc accgacggcg atttgcgccg cctgtttcaa
    23161 gaatgcgaca attttaccgg tctttcgata gacgaagtca tgcatacgca tcctaaaacc
    23221 atctccgccg aacgtctcgc caccgaagcc ctgaaagtca tgcaggcaaa ccatgtgaac
    23281 gggcttctgg ttaccgatgc agatggcgtg ctgatcggcg cgctgaatat gcacgacctt
    23341 ttggcggcgc ggattg
//
LOCUS       DAWGNT010000015        22254 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.015, whole genome shotgun sequence.
ACCESSION   DAWGNT010000015 DAWGNT010000000
VERSION     DAWGNT010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 22254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22254
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.015"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(120..1034)
                     /locus_tag="WHR98_000397"
     CDS             complement(120..1034)
                     /locus_tag="WHR98_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEZ2307129.1"
                     /translation="MDAVQLKSFVAVAHEGNLTQAAKRLFLSQPAVSAQIKALEEYVG
                     TPLFRRTGKGMVLTRAGEILLPEAESLLQYKHKLEHFAKTLAGDYSEETSLGIIHPID
                     SAKLVALTDNIGQTAPKTRLHIQYGMSGEILSRIQHKTLHGGFILGNAAQRGIRSVFL
                     QNLTYALICPQSQYPHLTRSLPQSLQECVWIEMSGVSGSRKHLHQFWRSNRLSPKKQI
                     LCDYPQTIIDLVAGGIGVAMVPGNKAEAAAKEGAGVAIIESCRHSMPLNFIYAEEYED
                     NPHVSLLLECIEKVWGVQAVQPPVVSDN"
     gene            1290..2759
                     /locus_tag="WHR98_000398"
     CDS             1290..2759
                     /locus_tag="WHR98_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3360 family protein"
                     /protein_id="HEZ2307130.1"
                     /translation="MEKHNGTYRDLHRPASEFATRDEYLEHELQIMQPKRWRPNLPFR
                     DYRFEWEDLIPAMAGTIGKVVMVGAVAAAFAAPLGLPDSFVLENVRYELLIAAAFILL
                     VSGFFLPGANLPGTHGPLIPMIPIVVSAGGHPLAFGISIAVLGLLMALFRGGSIMAKL
                     TSNGVCGGLLLYLGFIGTTGQVKKLFSWAGGFNMPYIAFTVIIVTIVMYALLEHWKKR
                     WLAVPLGCLIAGVVAFALGAPFEFHTAPGLPPMSPAYWWGENSGWHLGLPTAESFLVV
                     FPFAVLAVAMWSPDFLGHQVFQKISYPEKTDKVLMNIDDTMTSCSVRQAVGSILGGAN
                     FTSSWGTYIVPASIAKRPIPGGAVLTAVLCIIAGLWGYPMDLAIWQPVLSVALVVGVY
                     LPLLEAGMEMTRKGKTTQSAAIVVFSSALVNPVFGWALTMLLDNLGLIGCKERSAQLG
                     FAGRVLIPAVGFLILCVAMGAVGMLPGIPPFLEHFKSLG"
     gene            3011..3382
                     /locus_tag="WHR98_000399"
     CDS             3011..3382
                     /locus_tag="WHR98_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307131.1"
                     /translation="MNKTLSILPVAILLGGCAAGGGNTFGSLDGGTGMGGSIVKMAVG
                     SQCRAELDKRSEWRLTALAMSAEKQAEWENKICACVAQEAPERMTGNDVMQMLAPSTR
                     NQALAALTAKTVSACFKHLYR"
     gene            3455..4864
                     /locus_tag="WHR98_000400"
     CDS             3455..4864
                     /locus_tag="WHR98_000400"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEZ2307132.1"
                     /translation="MKYISTRGETAHKPFSEVLLMGLAPDGGLMLPEHYPQIGRETLD
                     KWRGLAYPELAFEIMRLFVTDIPEDDLRDILNRTYTEAAFGTKEITPVRTLSDGIKIQ
                     ALSNGQTLAFKDMAMQFLGNAFEYVLNKEGKKLNILGATSGDTGSAAEYALRGKKGVN
                     VFMLSPDGKMSAFQRAQMYSLQDENIHNIAVKGMFDDCQDIVKAVQNDAAFKEKYHIG
                     TVNSINWGRIVAQVVYYFAGYFKATQSNDEQVSFCVPSGNFGNVCAGHIAKQMGLPIR
                     RLIVATNENDVLDEFFKTGAYRPRNSAHTYVTSSPSMDISKASNFERFVFDLMDRDPQ
                     EINTLWAEVAAGKGFDLRFALDKVGGKYGFTSGKSTHADRLATIKQVYEQDQELIDPH
                     TADGVKVAREVREEGETVVCLETALAAKFDTTIREAVGDVAIPRPAALEGLENLPQRV
                     QTVPNSADAVKGIIEQTLA"
     gene            4910..5704
                     /locus_tag="WHR98_000401"
     CDS             4910..5704
                     /locus_tag="WHR98_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307133.1"
                     /translation="MTLPMQETCFSILLDELAAKQETAIASHLLADGSKVWIRKAGRH
                     NARWRYALLGMVARYLKLGVLKPVPSLGGEPAIATESKRLYELRAAGIAVPELLAVRK
                     NALMFGNLAGIPLDAQIRQEAEAGKADAWLAGLEAIARVHKKQQFLSQAFARNMMSDE
                     ENISFLDFEDDPSEVLTIAQCQARDWLCYIHSTALILKNGGLLEAAAEKWGGVLSEQP
                     AEIQRLIAATVKPILPIRRLEHPRWGRDALRLAASISLISLADIPP"
     gene            5892..6668
                     /locus_tag="WHR98_000402"
     CDS             5892..6668
                     /locus_tag="WHR98_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HEZ2307134.1"
                     /translation="MAAFNTQKVLSVHHWTDAYFTFTCTRDESLRFENGQFVMVGLMV
                     DGKPLMRAYSVASANWEEHLEFFSIKVQDGPLTSRLQHLKVGDDVLISKKPTGTLVAG
                     DLNPGKHLYLLSTGTGIAPFLSITKDPEIYEQFEKIILVHGVRYKKDLAYYDRFTKEL
                     PEHEYLGDLVKEKLIYYPIVSREEFEHHGRLTDLMVSGKLFEDIGLPKINPQDDRAML
                     CGSPAMLKDTCKVLDDFGLTVSPKTGVRGDYLIERAFVDQ"
     gene            complement(7326..9797)
                     /locus_tag="WHR98_000403"
     CDS             complement(7326..9797)
                     /locus_tag="WHR98_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEZ2307135.1"
                     /translation="MKKTCFHCGLDVPEHLHLTVRYENEDRETCCAGCQAVAQSIIDA
                     GLGSYYKQRTADAQKTELPPQEILDQIRLYDLPEVQSDFVETHGGTREAVLMLGGITC
                     AACVWLIEQQLLRTDGIVRIDLNYSTHRCRVVWDDGKIRLSDILLKIRQIGYTAAPYD
                     AQKIEAANQKERKQYIVRLAVAGLGMMQTMMFALPTYLYGGDIEPDFLQILHWGGFLM
                     VLPVVFYCAVPFYQGALRDLKNRRVGMDTPITVAIIMTFIAGVYSLATNAGQGMYFES
                     IAMLLFFLLGGRFMEHIARRKAGDAAERLVKLIPAFCHHMPDYPDTQETCEAAVVKLK
                     AGDIVLVKPGETIPVDGTVLEGASTVDESMLTGESLPVAKMPSEKVTAGTLNTQSPLI
                     IRTDRTGGGTRLSHIVRLLDRALAQKPRTAELAEQYASSFIFGELLLAFPVFIGWMLY
                     ADAHTALWITVALLVITCPCALSLATPTALAASTGTLAREGILIGGKQAIETLAQTTD
                     IIFDKTGTLTQGNPAVRRIELLGSMTEAQVLAVAQSLEQQSEHPLARAILNCRISGGS
                     VPDIAIKQRLNRIGEGVGAQLTVNGETQVWALGRASYVAEISGKEPQTEGGGSAVYLG
                     SQSGFQAVFYLTDPLKDSAAEAVRQLAGKNLTLHILSGDRETAVAETARALGVAHYRA
                     QAMPEDKLEYVKALQKEGKKVLMIGDGINDAPVLAQADVSAAAAGGTDIARDGADIVL
                     LNEDLRTVAHLLDQARRTRHIIRQNLIWAGAYNIIAVPLAVLGYVQPWIAALGMSFSS
                     LAVLGNALRLHKRGKMQSEKMPSEQ"
     gene            complement(9794..10972)
                     /gene="hflX"
                     /locus_tag="WHR98_000404"
     CDS             complement(9794..10972)
                     /gene="hflX"
                     /locus_tag="WHR98_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009347253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEZ2307136.1"
                     /translation="MTGRTGGNGSTQAQPERVMLVGVMLDKDGTGSSATRLNGFQTAL
                     AEAVELVKAAGGDSVRVETAKRDRPHTALFVGTGKAAELSEAVAADGIDLVVFNHELT
                     PTQERNLEKILQCRVLDRVGLILAIFARRARTQEGRLQVELAQLSHLAGRLIRGYGHL
                     QSQRGGIGMKGPGETKLETDRRLIAHRINALKKQLANLKKQRALRRKSRESGTIKTFA
                     LVGYTNVGKSSLFNRLTKSGIYAKDQLFATLDTTARRLYISPECSIILTDTVGFVSDL
                     PHKLISAFSATLEETAQADVLLHVVDAAAPNSGQQIEDVENVLQEIHAGDIPCIKVYN
                     KTDLLPSEEQNTGIWRDAAGKIAAVRISVAENTGIDALREAIAESCAAAPNTDETEMP
                     "
     gene            complement(10977..12257)
                     /locus_tag="WHR98_000405"
     CDS             complement(10977..12257)
                     /locus_tag="WHR98_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HEZ2307137.1"
                     /translation="MKSLFIRLLLLGSAAGVFYHTQNQSLPAGELVYPSAPQIRDGGD
                     ALHYLNRIRAQIGLHKLAHAPVLENSARRHARYLTLNPEDGHGEHHPDNPHYTAQKLT
                     ERTRLAGYLYNGVHENISTEEEAAESSDSDIRTQQRQVDGLMSAIYHRLSLLDRHTDE
                     AGAAFVRENGKTVLVFNQGNGRFERHCAQGRNQPEAGRKYYRNACHNGAVVYTDEAMP
                     AQELLYTAYPVGNGALPYFHGERPDPVPEYEITGNPASIDFSEAAGKITMKSFKLYQG
                     KNEIRPVRVLTAGNDPNGRLTAYQFALFPLKPLEYGTLYTAVFDYVRNGRRAQAKWQF
                     RTRKPDYPYFEVNGGETLAVRKGEKYFIHWRGRWCLEACTRYTYRQRPGSRLSIGRHE
                     AGGIVFSVDGMAGSRITLAPEGETERGVTLYLQD"
     gene            complement(12410..13135)
                     /locus_tag="WHR98_000406"
     CDS             complement(12410..13135)
                     /locus_tag="WHR98_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEZ2307138.1"
                     /translation="METQNKPTVTDIDRPILVPPGGHKKVLLHSCCAPCSGEVMEAML
                     ASGIDYTIYFYNPNIHPHKEYMLRKEENVRFAEKFGIPFIDKDDDYENDRKEWFAKAK
                     GMEFEPERGIRCTMCFDMRFEKAAQYAHEHGFPVFTSSLGISRWKNMAQINDCGRRAA
                     APYDDVVYWDFNWRKGGGSARMIEISKRENFYQQEYCGCAYSLRDSNAHRKSQGRIPI
                     KLGVLYYGDESTQYEPAPIRVDK"
     gene            complement(13208..13885)
                     /gene="radC"
                     /locus_tag="WHR98_000407"
     CDS             complement(13208..13885)
                     /gene="radC"
                     /locus_tag="WHR98_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HEZ2307139.1"
                     /translation="MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAV
                     DLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIV
                     LSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
                     ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSF
                     RQLGLMP"
     gene            complement(14008..15357)
                     /gene="gshA"
                     /locus_tag="WHR98_000408"
     CDS             complement(14008..15357)
                     /gene="gshA"
                     /locus_tag="WHR98_000408"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HEZ2307140.1"
                     /translation="MKLPVMSPEHSAQLQAFEAKILSNHAKIEAWFRTQWNAHRPPFY
                     GSVDIRNAGYKISSIDMNLFPGGFNNLNPNFIPLAAVAAQDAVQRACETAKSVLIIPE
                     NHTRNTFYLQNVYALGEILCSAGYEVRLGSLNPEVTEPTEFETALGDKILLEPLLRTR
                     DRVHLADGFSPCVVLLNNDLSAGIPDILKGISQTVLPPLHGGWTTRRKTNHFGAYNQV
                     TAEFAKLIGIDEWQINPYFEKIGGLDFQGREGEDALAEAVERVLAKIQAKYDESGITD
                     KPFVIVKADAGTYGMGVMSVKSADEVRGLNRKNRNKMAKVKEGLEVSEVIVQEGIYTY
                     ETLNGAVCEPVVYMMDRFVIGGFFRVHEGRGADENLNAGGMVFVPLSNSIPTGNGDNS
                     QEAPEACKRVFEQWDSLGMPRSEKDCDVDNEHNRLYVYGVMARLSLLAASIELEETA"
     gene            15617..17026
                     /gene="leuC"
                     /locus_tag="WHR98_000409"
     CDS             15617..17026
                     /gene="leuC"
                     /locus_tag="WHR98_000409"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEZ2307141.1"
                     /translation="MTAQTLYDKLWNSHVVREEEDGTVLLYIDRHLVHEVTSPQAFEG
                     LKMAGRKLWRIDSVVSTADHNTPTGDWDKGIQDPISKLQVDTLDKNIKEFGALAYFPF
                     MDKGQGIVHVMGPEQGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHTMATQCI
                     TAKKSKSMLIAVDGKLKAGVTAKDVALYIIGQIGTAGGTGYAVEFGGEAIRSLSMEGR
                     MTLCNMAIEAGARSGMVAVDQTTIDYVKDKPFAPEGEAWDKAVEYWRTLVSDEGAVFD
                     KEYRFNAEDIEPQVTWGTSPEMVLDISSKVPNPAEETDPVKRSGMERALEYMGLEAGT
                     PLNEIPVDIVFIGSCTNSRIEDLREAAAIAKDRKKAANVQRVLIVPGSGLVKEQAEKE
                     GLDKIFIEAGFEWREPGCSMCLAMNADRLTPGQRCASTSNRNFEGRQGNGGRTHLVSP
                     AMAAAAAVTGRFTDIRMMA"
     gene            17123..17377
                     /locus_tag="WHR98_000410"
     CDS             17123..17377
                     /locus_tag="WHR98_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307142.1"
                     /translation="MNKLFITALSALALSACAGTWEGAKQDTARNLDKTQAAAERAAE
                     QTGNAVEKGWDKTKEAVKKGGNAVGRGISHLGGKIENATE"
     gene            17439..18080
                     /gene="leuD"
                     /locus_tag="WHR98_000411"
     CDS             17439..18080
                     /gene="leuD"
                     /locus_tag="WHR98_000411"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEZ2307143.1"
                     /translation="MKAFTKITAIVAPLDRSNVDTDAIIPKQFLKSIKRSGFGPNAFD
                     EWRYLDHGEPGMDNSKRPLNPDFSLNQPRYQGAQILLTRKNFGCGSSREHAPWALDDY
                     GFRAVIAPSFADIFFNNCYKNGLLPIVLTEEQVDRLFKEVEANEGYQLSIDLAEQTLT
                     TPGGETFTFDITEHRKHCLLNGLDEIGLTLQHADEIHAFEEKRRQSQPWLFNG"
     gene            18250..18622
                     /gene="dcm"
                     /locus_tag="WHR98_000412"
                     /pseudo
     CDS             18250..18622
                     /gene="dcm"
                     /locus_tag="WHR98_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246222.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
     gene            18675..19070
                     /locus_tag="WHR98_000413"
     CDS             18675..19070
                     /locus_tag="WHR98_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HEZ2307144.1"
                     /translation="METLEALGYYVSWKVLNAKDFGIPQNRKRIYLTGSLKSKPDLSF
                     ETSPSPKLKNILESGLPTESSPFIKKLLKKFPPSELYGKSVKDKRGGKNNIHSWDIEL
                     KGAVTEEEKQLLNILLKERRKKNGLQKSA"
     gene            19085..19519
                     /locus_tag="WHR98_000414"
     CDS             19085..19519
                     /locus_tag="WHR98_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HEZ2307145.1"
                     /translation="MPLTKAQISTFYKHPDLQNILDSLTDKGYLVLEHPKQKIGGQRI
                     KDESLPKGYNIVSGKKSFEINKILDQNDVAPTLVAMDMEHLFVVDNGGLRTLTGKEGL
                     RLFGYPDDYSFDIPKKDRCDLLGNTVAVPVIKAVSERLLHTL"
     gene            19535..19696
                     /locus_tag="WHR98_000415"
     CDS             19535..19696
                     /locus_tag="WHR98_000415"
                     /inference="COORDINATES: protein motif:HMM:NF021105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NgoBV family restriction endonuclease"
                     /protein_id="HEZ2307146.1"
                     /translation="MIKLTAQQIFDKLLDEEKILSANGQIRFFLGDVDIIVKQKDVVG
                     NIIQEWLGG"
     gene            19697..20266
                     /locus_tag="WHR98_000416"
     CDS             19697..20266
                     /locus_tag="WHR98_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NgoBV family restriction endonuclease"
                     /protein_id="HEZ2307147.1"
                     /translation="MRKREIEFDVSTNTQMPPDFFLNKKDRSRELLEVKAFNRNTGPG
                     FDIADFKMYSDEIIHKPYMLDVDYLIFGYDMDDNGNVTIKDLWLKKVWQITRSMDGWA
                     INLQVKKGVVHKIRPGVWYSINKKNMPMFECLEDFVSAIEETVYQNPATRHNASLWKK
                     KFEEAYKKHYNRSISIPRWHEIAHKYKKK"
     gene            20300..21370
                     /gene="leuB"
                     /locus_tag="WHR98_000417"
     CDS             20300..21370
                     /gene="leuB"
                     /locus_tag="WHR98_000417"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEZ2307148.1"
                     /translation="MTKHIAILRGDGIGPEIVAETVRVLDKLIAQGLDAGYEYAPLGG
                     EAYDEYGHPYPEFTQNLCRKADAVLLGAVGSPQYDNLDRPLRPERGLLAIRKDLNLFA
                     NLRPAVLYPELANASTLKPEIVAGLNILIVRELTGDIYFGEPRGIRVLENGEREGYNT
                     MKYSESEIRRIAHVAFQSAQKRSKKVCSVGKANVLETTELWREIFEEIGKQYPDVELS
                     HMYVDNAAMQLVRAPKQFDVIATGNIFGDILSDEASMLTGSIGMLPSASLDENGKGLY
                     EPSHGSAPDIAGQNKANPLATILSLAMLLRYSLNDEARAQQVENAVQKVLQQGLRTSD
                     IYEEGTKLVSCSEMGDAVLAAL"
     gene            21533..22096
                     /locus_tag="WHR98_000418"
     CDS             21533..22096
                     /locus_tag="WHR98_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009311439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEZ2307149.1"
                     /translation="MKKIIFAALAAAAVGTASAATYKVDEYHANARFAIDHFNTSTNV
                     GGFYGLTGSVEFDQAKRDGKIDITIPVANLQSGSQHFTDHLKSADIFDAAQYPDIRFV
                     STKFNFNGKKLVSVDGNLTMHGKTAPVKLKAEKFNCYQSPMEKTEVCGGDFSTTIDRT
                     KWGVDYLVNVGMTKSVRIDIQIEAAKQ"
BASE COUNT         5344 a         5867 c         5793 g         5250 t
ORIGIN      
        1 ggcatttcca aagggcattt taagccgtat ttgagagaat gcggatggcg ttttcagtgt
       61 tttcagcgtg ataaaattca aatttctatt ttaaaacaat cagcaaagca ggatttattt
      121 cagttgtccg agacaacggg cggctgcacc gcctgcactc cccatacttt ttcaatgcac
      181 tcgagcagga gtgagacgtg gggattatcc tcgtattctt ccgcataaat gaaattgagc
      241 ggcatactgt ggcggcacga ttcgataata gccacgcccg cgccttcttt tgccgccgct
      301 tcggctttgt ttcccggcac cattgccaca cctataccgc ctgcaaccaa atcgataatg
      361 gtttgggggt agtcgcacaa gatctgtttt ttgggtgaga gccggttgct gcgccaaaac
      421 tggtgcaggt gcttcctact tccggacacg cccgacattt ctatccatac gcattcttgc
      481 aggctctgcg gaagggagcg ggtcagatgg ggatattggc tttgcgggca aatcagcgcg
      541 taggtcaggt tttgcaggaa tacgctgcgg atgccgcgtt gggcggcgtt gccgagtata
      601 aagccgccgt gcagggtttt gtgttggatg cgcgagagga tttcgccgct cattccgtat
      661 tggatgtgca ggcgcgtttt gggggctgtt tgaccgatat tgtccgtcag cgcgacgagt
      721 tttgccgaat cgatggggtg gataatgccc aaactggtct cttccgaata atcgcctgcc
      781 agcgttttgg caaaatgctc cagcttgtgt ttgtattgca gcagggattc cgcttcgggc
      841 aacagtattt cgcccgcccg cgtcaatacc atgcctttcc ccgtgcgcct gaacagcggc
      901 gtgccgacat attcttcaag ggctttaatt tgggcagaaa cggcaggctg ggaaaggaaa
      961 agtcgtttgg cggcttgggt aaggttgccc tcgtgcgcga cggcgacaaa tgattttaat
     1021 tgtacggcat ccatatatcc ctccttgtgc ggatgttttc tatatttgtg caatcgaaat
     1081 cttttaggtg gattgttgct gaaaattaac tttttaatca agtggtttgt aaattgtatc
     1141 agttttccgg atgatggtta tcaaaaaaaa agattggttt tattgcctgt ttgggcttta
     1201 aatggggtta cggcttccga acgcagcccg tatcaaaaag aaaagtcatg cgcccctttt
     1261 acgaggcgcg atatataagg aggaaggtta tggaaaaaca taatgggact tatcgggatt
     1321 tgcaccgtcc ggcttcggaa tttgcgacgc gggacgaata tttggaacat gaattgcaga
     1381 ttatgcaacc aaaacgctgg cggcccaacc tgccctttcg cgattaccgc ttcgagtggg
     1441 aggatttgat tcctgcgatg gcgggaacga ttggaaaagt ggtgatggtg ggggcggtgg
     1501 cggcggcgtt tgccgcacct ttggggctgc ctgacagctt tgtactggaa aatgtgcgct
     1561 atgagctttt aatcgccgcc gcgtttatct tattggtatc gggctttttt ctgcccggcg
     1621 ccaacctgcc cggtacgcac gggccgctga ttccgatgat tcccatcgtt gtgtcggcag
     1681 gcgggcatcc tttggcgttc ggcatttcga ttgcggtttt aggtctgctg atggctttat
     1741 ttcgcggcgg cagtattatg gcgaagctga caagcaacgg cgtatgcggc ggattattac
     1801 tctatttggg ctttatcggc acgacggggc aggtaaaaaa attgttttcg tgggcaggcg
     1861 gttttaatat gccctacatc gcttttaccg tcattattgt aacgattgtg atgtacgctt
     1921 tgttggagca ttggaaaaaa cgctggttag ccgtgccttt gggatgcttg attgccggtg
     1981 tggtggcatt tgcattgggt gcgccgtttg agtttcacac cgcccccggc ctgcctccaa
     2041 tgagtcctgc ttattggtgg ggtgaaaaca gcggctggca tctggggttg ccgacggcag
     2101 aaagtttttt ggttgtcttt ccatttgcgg tattggctgt tgcaatgtgg tcgcccgatt
     2161 ttttaggaca tcaagtgttc caaaaaatca gctatccgga aaaaaccgat aaggtattga
     2221 tgaatataga cgacaccatg acaagttgtt ctgtccgtca agcagtgggt tctattttag
     2281 ggggtgcaaa ttttacctct tcttggggaa cttatatcgt accggcatcg attgccaaac
     2341 gccccattcc gggcggtgcg gttttaacgg cggttttatg tattatcgcc gggttgtggg
     2401 gctatccgat ggacttggcg atttggcagc cggtattgag cgtagccttg gtcgtaggcg
     2461 tatacttacc gcttttggaa gcgggcatgg aaatgacgcg caaaggcaaa accacccaat
     2521 ccgccgccat cgtggtgttc tcttccgcct tggtcaatcc ggttttcggc tgggcgttga
     2581 cgatgctgtt ggataatttg ggcttaatcg gctgcaaaga gcgcagtgcg caattaggtt
     2641 tcgccggacg cgtgttgata cccgcagtag gtttcttgat cttgtgtgtg gcgatgggtg
     2701 cggtcgggat gctgcccggt atcccgccgt ttttggaaca cttcaaatct ttgggctagg
     2761 ctgaaatcgg aaatgccgtc tgaaccgctt tcagacggca tttttgcaaa caggcaaaat
     2821 gacggcggcg ggatttttta ttttcccgat tgaagtataa tgttgccggg cttcaaccgg
     2881 atattcaaaa cggtttgttc caacactcgg aacggcgcat aaaacgccgc ccttcgcgtt
     2941 atcccgaacg ggacggctaa tcagattcta tcgccataaa aggcggggtt tcaaccgaaa
     3001 aggaattgag atgaataaaa ccttgtctat tttgccggtg gcaatcttac tcggcggctg
     3061 cgccgccgga ggcggtaaca cattcggcag cttagacggt ggcacaggca tgggcggcag
     3121 catcgtcaaa atggcggttg ggagccaatg ccgtgcggaa ttggacaaac gcagcgaatg
     3181 gcgtttgacc gcgctggcga tgagtgccga aaaacaggcg gagtgggaaa acaagatttg
     3241 cgcttgcgtc gcccaagaag cacccgaacg gatgaccggc aacgatgtga tgcagatgct
     3301 ggctccgtcc acgcgcaatc aggcacttgc cgccctgacc gccaaaacgg tttccgcctg
     3361 cttcaaacac ctgtaccgct aaccttcttc agacggcatg aggcagatgc cgtctgaagc
     3421 cgttttcctg caatttcgac agacgagaaa aatcatgaaa tacatcagca cgcgcggcga
     3481 aaccgcacac aaaccgttca gcgaagtttt attgatgggg cttgcccccg acggcggcct
     3541 gatgctgccg gaacattatc cgcaaatcgg gcgggaaacc ttggacaaat ggcgcggttt
     3601 ggcttatccc gaattggcgt ttgaaattat gcgcctgttc gttaccgaca ttccggagga
     3661 cgatttgcgc gatattctga accgtactta cacggaagcg gcgttcggta ctaaggaaat
     3721 cacccccgtc cgcacgcttt cagacggcat caaaatccaa gccttgtcca acggccagac
     3781 gctggcgttc aaagatatgg cgatgcagtt tttgggcaat gcgtttgaat atgttttaaa
     3841 caaagaaggt aaaaaactca atatcttggg cgcaaccagc ggcgatacgg gttcggctgc
     3901 ggaatatgcc ttgcgcggca aaaaaggcgt gaacgtattt atgttgtcgc ccgacggtaa
     3961 aatgagcgcg ttccaacgcg cgcagatgta cagcttgcaa gacgagaata tccacaatat
     4021 cgccgtgaag gggatgtttg acgactgtca ggacattgtg aaggcggtgc agaatgatgc
     4081 cgcgttcaag gaaaaatacc atatcggtac ggtcaattcg atcaactggg gacgcatcgt
     4141 cgcgcaagtg gtttattact ttgcaggcta tttcaaagcg acgcaaagca atgacgagca
     4201 agtcagcttc tgcgtgccga gcggcaactt cggcaacgtt tgcgcgggac acatcgccaa
     4261 acagatgggt ttgcctatcc gccgcctgat tgtcgcgacc aatgaaaacg atgtgttgga
     4321 cgagtttttc aaaaccggcg cgtaccgtcc gcgcaacagc gcgcatactt atgttacctc
     4381 cagcccgtcg atggacattt ccaaagcgtc caacttcgag cgtttcgtgt tcgacctgat
     4441 ggatcgcgat cctcaggaaa tcaatacgct gtgggcggaa gtggctgcag gcaaaggctt
     4501 tgacctgcga tttgccttgg acaaagtcgg tggcaaatac ggctttactt ccggcaaatc
     4561 cacccacgcc gaccgcctcg ccaccatcaa acaggtttac gagcaagacc aagaactcat
     4621 cgacccgcac actgccgacg gcgtaaaagt cgcccgcgaa gtgcgtgaag aaggggaaac
     4681 ggtggtttgt ttggaaaccg cattggcggc gaaattcgat acgaccatac gcgaagccgt
     4741 cggcgatgtc gccattccgc gccccgccgc actggaaggt ttggaaaacc tgccgcagcg
     4801 cgtgcaaacc gtgccgaaca gtgcggatgc ggtaaaaggc atcatcgaac aaacccttgc
     4861 ctgatattcc gtgcagaagc attccgcccg aacttaagat tgaaagaaaa tgaccttacc
     4921 tatgcaggaa acctgttttt ccatactgtt ggacgaattg gcggcaaaac aggagaccgc
     4981 catcgcctcc cacctgcttg ccgacgggag caaggtatgg atacgcaaag caggcaggca
     5041 caatgcacga tggcgttacg cgctgctcgg tatggttgcc cgatatttga aactgggggt
     5101 gttgaagccg gtccccagcc tcggcggcga gcctgccatt gcaaccgaat caaaacgcct
     5161 gtacgaattg cgcgcggcgg ggatagccgt tcccgaattg ctcgccgtca ggaaaaatgc
     5221 ccttatgttc ggcaatttgg caggcatccc gctcgatgcg caaatccgcc aagaagccga
     5281 agccggaaag gcggacgctt ggcttgccgg tttggaagcc attgcacgcg tgcataaaaa
     5341 acagcagttc ctcagtcagg cgtttgcgcg gaatatgatg tcggacgagg aaaacatcag
     5401 ctttttggat tttgaagacg acccttccga agtcctgacc atagcgcaat gccaagcccg
     5461 cgattggctc tgctacatcc attcgaccgc gctgatattg aaaaacggcg gactgctgga
     5521 agcggctgcg gaaaaatggg gcggcgtact gtctgagcag cctgccgaaa tacaaaggct
     5581 gattgccgcc accgtcaaac cgatcctccc gatacgcagg ctggaacacc cccgctgggg
     5641 acgggacgcg ctcaggctgg cagcctcgat ttccctgatt tcccttgccg atataccgcc
     5701 ataagccgcc gcccgccccg cgatgccgtc tgaagccctt cagacggcat ataaccaacg
     5761 cgcatcaagc attgtcgcaa ccatccgttt cgtttagaat tttggcttta ccccgaatcg
     5821 ggcagacatt ttcactctgc cgcacatccc gaacaagcac tatccatttc ttttactgac
     5881 aggaaaccca aatggcagca ttcaataccc aaaaagtatt gtccgtacac cactggacag
     5941 acgcatattt tacctttacc tgcacccgcg acgaatcgtt gcgctttgaa aacggacagt
     6001 tcgttatggt cggattgatg gtggacggca agccgctgat gcgcgcatac agcgtcgcct
     6061 ccgccaactg ggaagaacac ctcgaatttt tcagcattaa agtccaagac ggtccgctga
     6121 ccagccgcct gcaacacctc aaagtcggcg acgacgtgtt aatcagcaaa aaaccgaccg
     6181 gaactctggt tgccggcgac ctgaatccgg gcaaacacct ttacttgttg agcaccggta
     6241 ccggcatcgc ccctttcttg agcatcacca aagaccccga gatttacgag caatttgaaa
     6301 aaatcatcct cgtacacggc gtgcgctaca aaaaagattt ggcgtactac gaccgcttta
     6361 ccaaagaatt gcccgaacac gaatacctcg gcgacttggt taaagaaaaa ctgatttact
     6421 acccaattgt ttcccgagaa gaattcgaac accacggccg cctaaccgac ctgatggtga
     6481 gcggcaaact gtttgaagac atcggcctgc ccaaaatcaa cccgcaagac gaccgcgcga
     6541 tgctgtgcgg cagccccgcg atgctgaaag acacctgcaa agttttggac gatttcggac
     6601 taaccgtttc tccgaaaaca ggcgtgcgcg gcgattacct gattgagcgc gcgtttgtgg
     6661 atcaataagc tgcttgaaaa tgccgtctga acggcatcag cgataaaaaa acccgaatcc
     6721 tgccaatcag gattcggggt ttttatagtg ggtaaaaatt agaaatgcac atttccgtca
     6781 ttccaacaca ggtgggaatc cggacttacc tgtttcatta tcgtttgaaa ataaaagaga
     6841 aaccaaacat atagattccc gcttgcgcgg gaatgacgac ggtgttttgc cgtagccaaa
     6901 gcagaaaaac atccctattg tcatttcatc atgatatgac aataggatgt taaaaattaa
     6961 ttatcattat atgattgata tataagaaaa actgtcccaa taagaaatgt tatgcagaaa
     7021 ataaaatgaa aaggatggtt ttcattgaaa atggttgttc tgccaccgtc atacacagaa
     7081 ccggtatttg gaaaaaaaat aatccatatt gacatcatta ttccatttat cgcataaatc
     7141 cactttttaa ttttttttcc tcattaatat aatctcttat ttaataaaat caaataccta
     7201 gcaattcgat ctcaaatttt aaacgccaac gtgtttgagc ggtaacaatg catactttaa
     7261 gtttgcaatc cttcatcgtc tcatttttgt tttaatcgac tatacgtcta aagcaacgcc
     7321 gtccgtcatt gttcggacgg cattttttca gactgcattt tcccccgttt gtgaaggcgc
     7381 agggcgttgc ccaaaaccgc cagcgaactg aagctcatac ccagtgcggc tatccacggt
     7441 tggacatagc ccaaaacggc aagcggtacg gcaatgatat tgtacgcgcc cgcccatatc
     7501 aggttttgcc ggataatatg gcgggtgcgc cgcgcctgat cgagcaggtg ggcgacggta
     7561 cgcaaatctt cgttcaataa cacaatgtcc gcgccgtccc tcgcaatatc cgtcccgccc
     7621 gctgcggcgg cggatacgtc tgcctgcgcc aaaacgggcg cgtcgttgat gccgtcgcct
     7681 atcatcagca cttttttccc ttctttttgc aaggctttga cgtattccag tttgtcctcg
     7741 ggcatggctt gggcgcggta gtgcgcgaca cccagggcgc gtgcggtttc ggcaacggcg
     7801 gtttcgcggt cgccgctgag gatgtgcagg gtcaggtttt tgcctgccaa ctgccgcacc
     7861 gcctccgccg cgctgtcttt caaggggtcg gtcaggtaga acacggcttg gaaaccgctt
     7921 tgactgccga ggtaaaccgc gctgccgccg ccttctgttt gcggttcttt acctgaaatt
     7981 tcggcgacat aggatgccct gcccaatgcc caaacctgtg tttcgccgtt gacggtcagt
     8041 tgcgcgccca cgccttcgcc gatgcggttg aggcgttgtt taatagcaat gtcggggacg
     8101 ctgccgcctg aaatgcggca gttgaggatg gcgcgcgcga gcgggtgttc ggactgctgt
     8161 tccaaacttt gcgccactgc cagcacttgg gcttcggtca tgctgccgag cagttcaatc
     8221 cggcggacgg cgggattgcc ttgggtcagc gtgcctgttt tgtcgaaaat gatgtcggtg
     8281 gtttgggcga gggtttcgat tgcctgcttt ccgccgatta aaataccttc gcgcgccagc
     8341 gtaccggtag aagctgccag cgcggtcggc gtggcaagcg ataaggcgca ggggcaggta
     8401 atgaccagca gggcgacggt aatccacaat gcggtgtgcg cgtcggcgta cagcatccag
     8461 ccgatgaaga cggggaaggc aagcaggagt tcgccgaata tgaaagacga ggcatattgt
     8521 tccgccaact cggcggtgcg cggtttttgc gccaaggcgc ggtcgagcag gcggacgatg
     8581 tgcgacagtc gcgtgccgcc gccggtgcgg tcggtgcgta taatcagggg gctttgcgtg
     8641 ttgagtgtac ctgcggttac tttttcagac ggcattttgg cgacgggcag gctctcgccg
     8701 gtcagcatag attcgtcaac cgtgcttgcg ccttccagca ccgtgccgtc aacggggatg
     8761 gtttcgcccg gtttgaccag cacgatatcg cccgccttca atttgacgac agctgcctcg
     8821 caggtttcct gcgtatcggg gtaatcgggc atatgatggc aaaacgcagg aatcagcttc
     8881 accagccttt cggcggcatc gcctgccttg cgtcgggcaa tgtgttccat aaagcgtccg
     8941 cccagcagga aaaacagcag catggctatg gattcgaaat acatcccctg ccccgcattg
     9001 gtcgcaaggc tgtaaacgcc ggcgataaag gtcatgatga tggcgacggt aatcggcgta
     9061 tccatgccga cgcggcggtt tttcaagtcg cgcagcgcgc cttgataaaa cgggacggcg
     9121 caatagaata cgacgggcag caccattaaa aagccgcccc aatggaggat ttgcaggaaa
     9181 tcgggttcga tgtcgccgcc gtaaaggtag gtcggcagcg cgaacatcat cgtctgcatc
     9241 atccccagcc cggcaacggc gaggcggacg atgtattgtt tgcgttcttt ttggttggcg
     9301 gcttcgattt tttgcgcgtc atagggtgcg gcggtgtagc ctatctgcct gattttcaac
     9361 agaatgtcgg aaaggcggat tttgccgtcg tcccagacga cgcggcagcg gtgcgtgctg
     9421 taattgaggt cgatgcggac gatgccgtct gtacgcaaaa gctgctgttc gatcagccag
     9481 acgcaggcgg cgcaggtgat gccgccgagc attaaaaccg cctcgcgcgt gccgccgtgg
     9541 gtttccacaa agtcggactg gacttcgggc aggtcgtaca ggcggatttg gtcgaggatt
     9601 tcttggggcg gcagctcggt tttttgcgcg tcggcggtgc gttgtttgta ataactgccc
     9661 aagcccgcgt caataatgct ttgtgcgacc gcctgacagc cggcgcagca ggtttcgcgg
     9721 tcttcgtttt cgtaacggac agtcaggtgg aggtgttcgg gaacatccag accgcagtgg
     9781 aaacaggttt ttttcatggc atttcggttt cgtctgtgtt tggtgcggcg gcacaagact
     9841 cggcaatggc ttcgcgcagt gcgtctatac cggtattttc agcaacggaa atgcggacgg
     9901 cggcaatttt tcccgcagcg tcgcgccata tgcccgtgtt ttgttcttca gacggcagca
     9961 ggtcggtttt gttgtacacc ttgatgcacg gaatatcgcc ggcatggatt tcttgcagta
    10021 cgttttccac gtcttcaatc tgctgtccgc tgttcggagc ggcggcatcg acgacgtgca
    10081 gcagcacatc ggcttgcgcg gtttcttcca gcgtggcgga aaaggcggaa atcagtttgt
    10141 gcggcagatc gctgacgaat ccgacggtat cggtcaggat aatgctgcat tcgggactga
    10201 tgtacagccg ccgcgccgtc gtgtcgagtg tggcgaaaag ctggtctttc gcatatatgc
    10261 ccgacttggt cagccggttg aacaggctgg atttgccgac attggtatag ccgaccagcg
    10321 caaacgtttt gattgtgccc gattcgcggg acttgcggcg cagggcgcgc tgttttttga
    10381 ggttggcaag ctgttttttc aaggcgttga ttcgatgggc gatcaatcgg cggtcggttt
    10441 ccagtttggt ttcgcccggc cctttcatgc cgataccacc gcgctggctc tgcagatggc
    10501 cgtaaccgcg tatcaagcgt cccgccaaat ggctcaattg cgccaactcg acttgcagcc
    10561 tgccttcctg cgtgcgggcg cggcgggcga aaatcgccaa aatcaaccct accctgtcca
    10621 atacgcggca ttggaggatt ttttccaaat tgcgttcctg cgtgggcgta agttcgtggt
    10681 tgaatacgac caaatcgatg ccgtctgcgg caactgcttc tgacagctcc gccgccttgc
    10741 ccgtgccgac aaacagcgcg gtgtgcggac ggtcgcgttt ggcagtctcc acgcgcacgg
    10801 aatcgccgcc cgccgctttg accagctcga cagcttccgc caatgccgtc tgaaaaccgt
    10861 tcagacgggt ggcactgctg cccgtaccat ctttgtccaa cattacgccc accagcatga
    10921 cgcgttcggg ttgcgcttgg gtactgccgt tgccgcctgt tctgcctgtc atgtattcaa
    10981 tcctgtaaat aaagggttac gcctcgttcc gtttctcctt ccggtgcaag cgtgatgcgg
    11041 ctgcccgcca ttccgtcaac gctgaagacg atgccgcccg cctcgtgcct tcctatggac
    11101 aggcggctgc cgggtcgctg ccggtaggta taacgggtac acgcttccaa acaccagcgt
    11161 ccgcgccagt ggatgaaata tttttcgcct tttctaaccg caagtgtctc gccgccgttt
    11221 acctcaaaat aagggtaatc gggttttcgg gttctaaact gccatttcgc ctgcgcgcgc
    11281 cgtccgttgc ggacatagtc gaataccgcc gtataaagcg taccgtattc caaaggcttg
    11341 agcgggaaaa gcgcgaattg gtacgcggtc agcctgccgt tggggtcgtt gccggcggtt
    11401 aaaactctga cggggcggat ttcgttttta ccctgataca gcttgaaact tttcatcgta
    11461 attttgcctg ccgcctcgga aaaatcaatg ctggcaggat tgcccgtgat ttcatattcc
    11521 ggcacggggt ctggacgctc gccgtggaaa taaggcagtg cgccgttgcc gacgggatag
    11581 gctgtataga gcagctcctg tgcgggcatg gcttcgtcgg tgtacacgac cgcaccgtta
    11641 tggcaggcgt tgcggtaata tttccgtcct gcttccggct gatttctgcc ttgggcgcaa
    11701 tgccgctcaa acctgccgtt gccctgattg aatacgagaa cggttttacc gttttcgcgc
    11761 acaaatgccg ctcctgcctc atccgtatgg cggtcaagta gggaaaggcg gtggtagatt
    11821 gcgctcatta atccgtccac ttggcgttgc tgcgtgcgga tgtcgctgtc ggacgattcg
    11881 gcggcttcct cttccgtgct gatgttttca tgcacgccgt tgtagagata cccggcaagg
    11941 cgtgtgcgtt cggtcagctt ttgtgcggtg tagtgcggat tgtcgggatg gtgttcgccg
    12001 tgtccgtctt cgggattgag cgtgagatag cgtgcgtgcc tgcgggcgga attttccaaa
    12061 accggcgcgt gtgccagctt gtgcaaaccg atttgggcgc ggatgcggtt gaggtagtgc
    12121 agcgcatcgc cgccgtccct gatttgcggt gcggacggat agacaagttc gcccgcgggc
    12181 agggattggt tttgggtatg atagaaaacg cctgccgccg aacccaacag gagcagccga
    12241 ataaaaaggg atttcataat gccgtcctcc cgacgcggca acggggtgtt ttatcaaaac
    12301 ggcaaacttg ccaatgcggt ttccgattgc agattgccaa accggcaaac ctttccccgt
    12361 gccgatgccg aacctgatgc cgtctgaacc ttcagacggc atcggatgtt tatttgtcca
    12421 cccggatggg tgcaggttcg tattgtgtcg attcgtcgcc gtaatacagc acgccgagtt
    12481 tgatggggat tctgccctgt gatttgcggt gggcattgga atccctcagg gaataggcac
    12541 aaccgcaata ttcctgctgg tagaagtttt cacgtttgct gatttcaatc atgcgcgcgc
    12601 tgccgccgcc tttgcgccag ttgaaatccc aatacaccac atcatcgtaa ggcgcggcgg
    12661 cacggcggcc gcagtcgttg atttgcgcca tatttttcca gcgtgaaatg cccagcgaac
    12721 tggtaaagac ggggaacccg tgttcatgcg cgtattgcgc cgccttttca aaacgcatat
    12781 cgaaacacat ggtgcagcgg atgccgcgct caggttcgaa ttccatacct ttggctttgg
    12841 caaaccattc tttgcggtcg ttttcgtagt cgtcgtcttt atcgatgaaa ggaatgccga
    12901 acttttccgc aaagcgcacg ttttcctctt ttcggagcat atactctttg tgcggatgga
    12961 tattgggatt gtaaaaataa atggtgtagt cgatgccgga ggcaagcatc gcctccatca
    13021 cttcgccgct gcacggggcg cagcaggaat gcagcaagac ttttttatgt ccgccgggcg
    13081 ggacgagtat ggggcggtca atgtcggtaa cggtaggttt gttttgtgtt tccattaact
    13141 taacaatatc tgtcgaatac ggttgaagcg gctattttat cagagccgcc gcatgtaaaa
    13201 cagggggtca gggcatcagc ccgagctgcc tgaacgaacg gacggtttgc gccgttacga
    13261 taaaatggtc gagcagcgac acatcgacca gcgacattgc ctgtgccagc cgccttgtga
    13321 acatgatgtc ttcctgcgaa ggttcgggcg agccgcccgg atggttgtgc gcaataatca
    13381 ggctgtcggc atattcgtcc aatgccagtt tgacgatttc gcggatgtaa atcgtgtttt
    13441 ccgcaaccgt accgcgcgac agctctctga ccgcaatcag ttggttttgg cggttcagca
    13501 gcagcgcgac gctgacttcg actttttcct gccccaaatg aaagcgtaaa taatcggcca
    13561 ccgtatccgg atcggacagg acgatgctct cctgcaattc ttccgccaat atccgccgcc
    13621 cgatttccct gaccacggca aactgtgtga aacttgccgt ccccatccct ttgtatgccg
    13681 acagttttcc gacctccgcg ctcatcagcc tccccaaact gccgaactcc tgcagcaaat
    13741 aacgcgccaa atcgaccgca ctcattccgc gcgtgccgac gcgcagcagg attgccaaaa
    13801 gttcggcatc actcaacgcc gccgccccgc gttccaacag cttttccctg ggtctttcgc
    13861 cttccggcca ttgcttgatg ctcatgtttt ccctttttta aatagtctga gatgccgtct
    13921 gaaacagatg ttcccacacg ccaaatatcc gaaatgccgt ctgaaccgga tttccgcttc
    13981 agacggcatc tgtatttcaa aacagtctta cgccgtttct tccaactcga tggacgccgc
    14041 cagaagcgac aggcgtgcca ttacgccgta aacgtagagg cggttgtgtt cgttgtccac
    14101 gtcgcagtct ttttcagagc gcggcatacc cagcgagtcc cattgttcga atacgcgctt
    14161 gcaggcttcg ggcgcttctt gggagttgtc gccgttgccg gtggggatgc tgttggacag
    14221 cggaacaaac accataccgc cggcgttgag gttttcgtcc gcaccgcgcc cttcgtgtac
    14281 gcggaaaaag ccgccgatga cgaagcggtc catcatatac acgacgggtt cgcacaccgc
    14341 gccgtttaag gtttcataag tataaatccc ttcttggaca atcacttcgc tgacttccaa
    14401 gccttctttg actttcgcca ttttattgcg gtttttacgg ttcaatccgc gcacttcgtc
    14461 ggcggatttg acgctcatca cgcccatgcc gtaagtgccg gcatcggctt tgacgatgac
    14521 gaaaggtttg tcggtaatgc ccgattcgtc gtatttggct tgaattttcg ccagcacacg
    14581 ttctaccgct tccgccaacg cgtcttcgcc ttcacgccct tggaagtcca aaccgccgat
    14641 tttttcaaaa taagggttaa tttgccattc gtcgatgccg attaacttgg caaattcggc
    14701 ggtaacttgg ttgtacgcgc cgaaatgatt tgttttgcgg cgcgtcgtcc aaccgccgtg
    14761 caacggcggc aaaacggttt ggctgatgcc tttgaggatg tcgggaatgc cggcggacaa
    14821 atcgttgttc aacaaaacca cgcaaggcga aaagccgtct gcaagatgga cgcggtcgcg
    14881 ggtacgcaat aaaggttcca acaggatttt gtcgcccaat gcggtttcaa attcggtcgg
    14941 ttcggttact tccggattca ggctgcccaa gcgcacttca taccctgccg aacacaaaat
    15001 ctcgccgagg gcgtaaacgt tttgcaggta aaacgtattg cgcgtgtggt tttcgggaat
    15061 aatcaatacg gatttcgccg tttcgcaggc gcgttgcacc gcatcttgcg cggcaaccgc
    15121 cgccagcggg ataaagttgg gattcagatt attgaagccg ccggggaaca aattcatatc
    15181 gatagacgaa attttgtaac cggcattgcg tatatcgacc gaaccgtaaa acggcgggcg
    15241 gtgcgcgttc cactgcgtgc ggaaccacgc ctcgattttg gcgtgattgg acaggatttt
    15301 tgcctcaaac gcctgaagtt gcgccgaatg ttcgggcgac atcaccggta atttcatctt
    15361 tcgtctgcct ctgtgtgttt tttgacaaga tgcagatgat aatgcctttg aaagaatgac
    15421 gacaagtatt ctttcgtatc gaatcatgct ttagatataa ctgtttactg aaatggacaa
    15481 tatgtctaat tttttcgtta aaattgtttg caaaataaca ccggctcaaa aattagacaa
    15541 aatttgttgc gcggtataaa gaatacgtct aaaatccgcc caatccgcat taccatttat
    15601 ccaaaagaac aacatcatga cagcacaaac cctctacgac aaactttgga acagccacgt
    15661 cgtccgcgaa gaagaagacg gcaccgtcct gctctacatc gaccgccatt tggtgcacga
    15721 agttaccagc cctcaggcat ttgaaggctt gaaaatggcg gggcgcaagc tgtggcgcat
    15781 cgacagcgtc gtctccaccg ccgaccacaa caccccgacc ggcgattggg acaaaggcat
    15841 ccaagacccg atttccaagc tgcaagtcga tactttggac aaaaacatta aagagtttgg
    15901 cgcactcgcc tattttccgt ttatggacaa aggtcagggc atcgtacacg ttatgggccc
    15961 cgaacaaggc gcgaccctgc ccggtatgac cgtcgtctgc ggcgactcgc acacttccac
    16021 ccacggcgca ttcggcgcac tggcgcacgg catcggcact tccgaagtcg agcacacgat
    16081 ggcgacccag tgcattaccg cgaaaaaatc caaatccatg ctgattgccg ttgacggcaa
    16141 attaaaagcg ggcgttaccg ccaaagacgt ggcactttac atcatcgggc aaatcggcac
    16201 ggcgggcggt acaggctacg ccgtcgagtt tggcggcgaa gccatccgca gcctttctat
    16261 ggaaggccgc atgactttat gcaatatggc gatcgaagcc ggtgcgcgct caggcatggt
    16321 tgccgtcgac caaaccacca tcgactatgt aaaagataaa cccttcgcac ccgaaggcga
    16381 agcgtgggac aaagccgtcg agtactggcg cacgctggtg tctgacgaag gtgcggtatt
    16441 cgacaaagaa taccgtttca acgccgaaga catcgaaccg caagtcactt ggggtacctc
    16501 gcctgaaatg gttttagaca tcagcagcaa agtgccgaat cctgccgaag aaaccgatcc
    16561 ggtcaaacgc agcggtatgg aacgcgccct tgaatacatg ggcttggaag ccggtacgcc
    16621 attaaacgaa atccccgtcg acatcgtatt catcggctct tgcaccaaca gccgcatcga
    16681 agacttgcgc gaagccgccg ccatcgccaa agaccgcaaa aaagccgcca acgtacagcg
    16741 cgtgttaatc gtccccggct ccggtttggt taaagaacaa gccgaaaaag aaggcttgga
    16801 caaaattttc attgaagccg gttttgaatg gcgcgaaccg ggctgttcaa tgtgtctcgc
    16861 catgaacgcc gaccgcctga ccccggggca acgctgcgcc tccacctcca accgcaattt
    16921 tgaaggccgt caaggcaacg gcggacgtac ccacctcgtc agccccgcta tggcagccgc
    16981 cgccgccgtt accggccgct ttaccgacat ccgcatgatg gcgtaagtat tttcaggcgg
    17041 tctttaagaa tttgacgcgg ccgtctgaaa tatgtcccgt aaggcagaaa cacctttaat
    17101 attcaaacca aggagtttaa ccatgaacaa acttttcatt accgccctgt ccgccctcgc
    17161 cttgtccgcc tgcgccggca cttgggaggg cgcgaaacaa gacaccgccc gcaaccttga
    17221 caaaacacag gccgccgccg aacgcgccgc cgaacaaaca ggcaacgccg tcgaaaaagg
    17281 ctgggacaaa accaaagaag ccgtcaaaaa aggcggcaat gccgtcggac gcggcatttc
    17341 ccatctcggc ggaaaaatcg aaaacgccac cgaataaccg attcgcgatg ccgtctgaaa
    17401 ccgcttcaga cggcatcgtc agcacaagac gcaaacccat gaaagccttt accaaaatta
    17461 ccgccatcgt cgccccgctc gaccgcagca acgtcgatac cgacgccatc atccccaaac
    17521 aatttctgaa atccatcaaa cgcagcggtt tcggccccaa tgcctttgac gaatggcgtt
    17581 acctcgacca cggcgaaccg ggcatggaca acagcaaacg cccgttgaac cctgatttct
    17641 cgctgaacca gccgcgttac caaggcgcgc aaatcctgtt gacgcgtaaa aacttcggtt
    17701 gcggctcttc acgcgaacac gccccttggg cattggacga ctacggcttc cgcgccgtca
    17761 tcgcccccag cttcgccgac atcttcttca acaactgcta caaaaacggc cttttaccta
    17821 tcgtgttgac cgaagaacaa gtcgatcggc ttttcaaaga agttgaagcc aacgaaggct
    17881 atcagctctc catcgacctt gccgaacaaa ccctgaccac ccctggcggc gaaacattca
    17941 cattcgacat taccgaacac cgcaaacact gcctcttaaa cggcttggac gaaatcggac
    18001 tgaccctgca acatgccgat gaaattcacg cctttgaaga aaaacgccgc caaagccagc
    18061 cttggctgtt taacggttaa aacctatgcc gtctgaaggc cgttcagacg gcatttctga
    18121 taacatataa ttgctgcaac tgatgtaaac agagggatta tcaattgctt tcatctttca
    18181 agcgggctta gcaacgctct aaattaatgc aatacaactc tatttcaaat aaatttttag
    18241 atttttaata tgcaacaaat taaatttatt gacttatttt ccggaatgag tggcatcagg
    18301 aaaggattcg aacaagcctg tcggaaacag tcggttgctt gcgaatgtgt ttttacttca
    18361 gaaatcaaac cggcagcttt ggaagtattg aagcaaaact accctgatga agtgccgtat
    18421 ggagacataa cgaaaattga aacaggggat attcccgatt ttgacattct gttggcaggc
    18481 ttcccttgtc aggctttttc tttcgccgga aaaagattgg gctttgaaga tacacgggga
    18541 acgcttttct ttgatgtggc aaggatttta aaagcaaaaa aaccaaaagg ttttattttg
    18601 gaaaatgtgg aaggattggt gacacacgat agaaaagatt cgacacaaaa atagggcgca
    18661 ccctgaccgt tattttggaa accttggaag cattgggcta ctatgtttct tggaaagttt
    18721 taaatgcaaa agatttcggc attccccaaa acaggaagcg catttatctg acaggcagtt
    18781 tgaaatccaa acccgactta tctttcgaaa caagcccaag tccgaaatta aaaaatattt
    18841 tggaatcggg actgcctact gaaagcagcc ctttcatcaa gaaattgcta aaaaaatttc
    18901 ccccgtccga actgtacgga aaatcagtaa aagacaaacg gggagggaaa aacaatattc
    18961 acagttggga tattgaatta aaaggcgcag taaccgaaga agagaagcaa ttgttaaata
    19021 tccttctaaa agaacggagg aaaaaaaatg ggcttcagaa atcggcatag attggatgga
    19081 tgggatgcct ttgacaaaag cgcaaatttc aactttctat aaacaccccg atctccaaaa
    19141 tattttggac agcctgacag ataaaggcta tttggtttta gagcatccga aacaaaaaat
    19201 tggcgggcaa agaatcaaag atgaatccct gcccaaaggc tacaatattg tttcaggtaa
    19261 aaaatctttt gaaatcaata aaatattaga tcaaaacgat gttgcgccaa ccttggttgc
    19321 aatggatatg gagcaccttt tcgtcgttga caacggcggt ttgcgtacac ttaccggaaa
    19381 agaagggttg cgcttattcg gctatccgga cgattattcg tttgatattc ccaaaaaaga
    19441 cagatgcgat ttattgggta ataccgttgc cgtccctgtg attaaggcgg tatctgaaag
    19501 acttctgcat actttataaa ccgacaggga taaaatgata aaacttactg cacaacaaat
    19561 atttgataag ttgctggatg aagaaaaaat cttatcggcc aatggtcaaa ttagattttt
    19621 cttgggcgat gtggatatta tcgtcaaaca aaaagatgtt gtcggcaaca tcattcagga
    19681 atggctcggc ggatgattga gaaaaaggga aattgaattt gatgtttcaa ccaataccca
    19741 aatgcctccc gatttctttt taaataaaaa agaccgcagc agagaattgt tggaagtaaa
    19801 ggcgttcaac cgaaataccg gcccgggttt tgatattgca gattttaaaa tgtattctga
    19861 tgaaatcatt cataagccct atatgctgga tgtagactat ttaatattcg gttacgatat
    19921 ggacgacaac ggcaatgtaa ccatcaagga tttatggctt aaaaaagtat ggcaaattac
    19981 gagaagcatg gatgggtggg caattaatct tcaagtcaaa aaaggcgtgg tgcataaaat
    20041 ccgcccgggt gtttggtaca gcataaataa aaagaatatg cctatgtttg aatgcttgga
    20101 agattttgtt tccgcaattg aagaaaccgt ttatcaaaac ccggcaacac ggcataacgc
    20161 atccttatgg aaaaagaaat ttgaggaagc ctataaaaaa cactacaacc gatcgatttc
    20221 catacctcgt tggcacgaaa ttgcacacaa atacaaaaag aaataaccct tcaaccatca
    20281 acccataagg aaacttgaaa tgaccaaaca tatcgccatc ctccgaggtg acggcatcgg
    20341 tcccgaaatc gtcgccgaaa ccgtccgcgt actcgacaaa ctcatcgccc aaggtttgga
    20401 tgccggctac gaatacgccc cattgggcgg cgaagcctat gacgaatacg gtcatcctta
    20461 tcccgaattt acgcaaaacc tctgccgcaa agccgatgcc gtcctgcttg gtgcagtcgg
    20521 ttctcctcaa tacgacaacc tcgaccgtcc gttgcgccct gagcgcggcc tgttggcaat
    20581 ccgtaaggat ttgaacctgt ttgccaattt gcgtcctgct gttttatatc ccgaattagc
    20641 caacgcctcc acgctgaagc ctgaaatcgt tgctggtttg aatattttga ttgtgcgcga
    20701 actcaccggc gacatctatt tcggcgaacc gcgcggcatc cgcgttctgg aaaacggcga
    20761 acgcgaaggc tacaacacca tgaaatacag cgaaagcgaa atccgccgca tcgcccacgt
    20821 cgctttccaa tccgcccaaa aacgcagcaa aaaagtctgc tccgtaggca aagccaacgt
    20881 tttggaaacc accgaactgt ggcgcgaaat ctttgaagaa atcggcaaac aatatcccga
    20941 tgtcgaactt tcccatatgt atgtggacaa cgccgctatg cagctcgtgc gcgcgcccaa
    21001 acagtttgac gtgattgcca ccggcaacat cttcggcgac atcctctccg acgaagcctc
    21061 catgctgacc ggctccatcg gtatgctgcc ttccgcttct ttggacgaaa acggcaaagg
    21121 cctgtacgaa ccgtcccacg gctccgctcc cgacatcgcc ggacaaaaca aagccaaccc
    21181 gctggccacc atcctctcgc tcgcaatgtt gctgcgttac agcctgaacg acgaagcgcg
    21241 cgcgcaacaa gttgaaaacg ccgtccaaaa agtgctgcaa caaggcttgc gtaccagcga
    21301 catttacgaa gaaggcacaa aactcgtttc ctgctccgaa atgggcgatg cggtactcgc
    21361 cgccttgtaa aaaaacaaag cgcggatcac accgcgcttt ttcatctgcc cttttccgct
    21421 cgccccgttc gtcaaccgcc tgcaaagcca ccgtttaccg gcaggaaatg ccataaatcc
    21481 ccgcctatgt taggataaac gcctttactg gctcacacaa aggattatca tcatgaaaaa
    21541 aatcatcttc gccgcactcg cagcggcagc cgttggcact gcctccgccg ccacctacaa
    21601 agtggacgaa tatcacgcca acgcccgttt cgccatcgac catttcaaca ccagcaccaa
    21661 cgtcggcggt ttttacggtc tgaccggttc cgtcgagttc gaccaagcaa aacgcgacgg
    21721 taaaatcgac atcaccatcc ccgttgccaa cctgcaaagc ggttcgcaac actttaccga
    21781 ccacctgaaa tcagccgaca tcttcgatgc cgcccaatat ccggacatcc gctttgtttc
    21841 caccaaattc aacttcaacg gcaaaaaact ggtttccgtt gacggcaacc tgaccatgca
    21901 cggcaaaacc gcccccgtca aactcaaagc cgaaaaattc aactgctacc aaagcccgat
    21961 ggagaaaacc gaagtttgcg gcggcgactt cagcaccacc atcgaccgca ccaaatgggg
    22021 cgtggactac ctcgttaacg ttggtatgac caaaagcgtc cgcatcgaca tccaaatcga
    22081 ggcagccaaa caataaatct tgatgcgaat cagcacaaat gccgtctgaa cgtccttcaa
    22141 acggcatttg tgccgtcttc atcaaaccgc cccgccaacc gtaagccgat atggcggagt
    22201 acaacccgcc gaaagatatt tcagcggcag gcagggcttg ccggaaagtc cgga
//
LOCUS       DAWGNT010000016        21684 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.016, whole genome shotgun sequence.
ACCESSION   DAWGNT010000016 DAWGNT010000000
VERSION     DAWGNT010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21684
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.016"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(60..1946)
                     /gene="uvrC"
                     /locus_tag="WHR98_000419"
     CDS             complement(60..1946)
                     /gene="uvrC"
                     /locus_tag="WHR98_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEZ2307150.1"
                     /translation="MPSEAVFQMIDMNTENRSPEQFDIPLFLKNLPKLPGVYRFFDEG
                     GKVLYVGKAVNLKRRVSGYFQKNDHSPRIALMVKQVHHIETTITRSEAEALILENNLI
                     KALSPKYNILFRDDKSYPYLMLSGHQYPQMAYYRGTLKKPNQYFGPYPNSNAVRDSIQ
                     VLQKVFMLRTCEDSVFEHRDRPCLLYQIKRCSAPCVGHISEEDYHDSVREASTFLNGK
                     TDELTRTLQHKMQTAAANLQFEEAARYRDQIQALGIMQSNQFIDSKNPNNPNDIDLLA
                     LAVSDGLVCVHWVSIRGGRHVGDKSFFPDTKNDPEPNGQDYAEAFVAQHYLGKSKPDI
                     IISNFPVPDALKEALEGEHGKQMQFVTKTIGERKVWLKMAEQNAQMAIAQRCLQQSSQ
                     QHRIDELAKILNMNSDDLNRLECFDISHTQGEATIASCVVYDEQNIQPSQYRRYNITT
                     AKPGDDYAAMREVLTRRYGKMQEAEANGETVKWPDVVLIDGGKGQIGVAVSVWEELGL
                     HIPLVGIAKGPERKAGMEELILPFTGEVFRLPPNSPALHLLQTVRDESHRFAITGHRK
                     KRDKARVTSSLSEIPGIGSKRRQALLTRFGGLRGVIAASREDLEQVEGISKALAETIY
                     NHLH"
     gene            complement(2001..4178)
                     /locus_tag="WHR98_000420"
     CDS             complement(2001..4178)
                     /locus_tag="WHR98_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEZ2307151.1"
                     /translation="MQQKIRFQIEGMTCQACASRIEKVLNKKDFVKSAGVNFASEEAQ
                     VTFDDSKTSAADIAKIIEKTGYGAKEKTEDTLPQPEAEHHIGWRLWLLLAINIPFLIG
                     MVGMMLKGLNWTRHDWMLSPLLQFALASVVQLWLAVPFYKSAWASIKGGLANMDVLVT
                     IGTVSIYLYSVYMLFFSPHAAYGMAHVYFEVGVMVIGFVSLGKFLEHRTKKSSLNSLG
                     LLLKLTPTQVNVQRNGEWKQLPIDQVQIGDLIRANHGERIAADGIIESGSGWADESHL
                     TGESNPEEKKAGSKVLAGALMTEGSVVYRATQLGSQTLLGDMMNALSEAQGSKAPIAR
                     VADKAAAVFVPTVVGIALLTFIATWLVKGDWTVALMHAVAVLVIACPCALGLATPAAI
                     MVGMGKAVKHGIWFKDAAAMEEAAHVDAVVLDKTGTLTEGKPQVAAVYCVPDSGFDED
                     ALYRIAATVEQNAAHPLARAIVSAAQARGLGIPAAQNAQTVVGAGIAAEVKGAGLVKA
                     GKAEFAELTLPKFSDGVWKIASVVAVSVNGKPIGAFALADALKADTAEAIGRLKKHNI
                     DVYIMSGDNQGTVEYVAQQLGIAHAFGNMSPRDKAAEVQKLKAAGKTVAMVGDGINDA
                     PALAAANVSFAMKGGADVAEHTASATLMQHSVNQLADALLVSQATLKNIKQNLFFAFF
                     YNILGIPLAALGFLNPVIAGAAMAASSVSVLSNALRLKRVKID"
     gene            4317..5267
                     /gene="trxB"
                     /locus_tag="WHR98_000421"
     CDS             4317..5267
                     /gene="trxB"
                     /locus_tag="WHR98_000421"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEZ2307152.1"
                     /translation="MSQHRKLIILGSGPAGYTAAVYAARANLNPVIITGIAQGGQLMT
                     TTEVDNWPADADGVQGPELMARFLAHAERFGTEIIFDQINAVDLQKRPFTLKGDMGEY
                     TCDALIVATGASAKYLGLPSEEAFAGKGVSACATCDGFFYKNQDVAVVGGGNTAVEEA
                     LYLANIAKTVTLIHRRSEFRAEKIMIDKLMKRVEEGKIILKLESNLQEVLGDDRGVNG
                     ALLKNNDGSEQQIAVSGIFIAIGHKPNTDIFKGQLEMDEAGYLKTKGGTADNVGATNI
                     EGVWAAGDVKDHTYRQAITSAASGCQAALDAERWLGSQNI"
     gene            5423..5791
                     /gene="rpsF"
                     /locus_tag="WHR98_000422"
     CDS             5423..5791
                     /gene="rpsF"
                     /locus_tag="WHR98_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEZ2307153.1"
                     /translation="MRHYEIVFIVHPDQSEQVPAMVERYKTMIAEANGKIHRLEDWGR
                     RQLAYPINKIHKAHYVLMNIETTPEVVEELETAFRFNDAVLRHLTIKTKHAVTEASPM
                     LGGEKAKNLLSGASEEAVAQ"
     gene            5792..6094
                     /gene="priB"
                     /locus_tag="WHR98_000423"
     CDS             5792..6094
                     /gene="priB"
                     /locus_tag="WHR98_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HEZ2307154.1"
                     /translation="MGFNNLVSLAVLIEKVFPIRYTPAGIPVLDIILKHESWQEENGQ
                     QCLVQLEIPARILGRQAEEWQYRQGVYVHVEGFLAQKSRRSLMPMLRIQNIQEYKG"
     gene            6101..6331
                     /locus_tag="WHR98_000424"
     CDS             6101..6331
                     /locus_tag="WHR98_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009120066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEZ2307155.1"
                     /translation="MARQSFKRRKFCRFTAEKIQEVDYKQVDLLKDFISENGKIIPAR
                     ITGTKAFYQRQLAVAVKRARFLALLPYTDQHK"
     gene            6348..6800
                     /locus_tag="WHR98_000425"
     CDS             6348..6800
                     /locus_tag="WHR98_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEZ2307156.1"
                     /translation="MQIILLEKIGGLGNLGDIVTVKNGYARNFLIPAGKAKRATEANM
                     KEFEARRAELEAKQAEILADARVRQEKLDGQTITVAQKAGVDGRLFGSVTNADIAAAI
                     VAAGIEAVKANVRLPNGPLKAVGEYEVEVALHTDAVAKITVAVVAATE"
     gene            6814..6921
                     /locus_tag="WHR98_000426"
     CDS             6814..6921
                     /locus_tag="WHR98_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HEZ2307157.1"
                     /translation="MPSETLPIVGMWFQTVFVLFSVYSAKIGMVVFIVD"
     gene            complement(7762..8568)
                     /locus_tag="WHR98_000427"
     CDS             complement(7762..8568)
                     /locus_tag="WHR98_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEZ2307158.1"
                     /translation="MWHWDIILILLAVGSAAGFIAGLFGVGGGTLIVPVVLWVLDLQG
                     LAQHPYAQHLAVGTSFAVMVFTAFSSMLGQHKKQAVDWKTVFTMMPGMVFGVFAGALS
                     AKYIPAFGLQIFFILFLTAVAFKTLHTGRQTASRPLPKLPGLTAVSTLFGTMSSWVGI
                     GGGSLSVPFLIHCGFPAHKAIGTSSGLAWPIALSGAISYLLNGLNIAGLPEGSLGFLY
                     LPAVAVLSAATIAFAPLGVKTAHKLSSAKLKKSFGIMLLLIAGKMLYNLL"
     gene            complement(8569..9315)
                     /gene="pssA"
                     /locus_tag="WHR98_000428"
     CDS             complement(8569..9315)
                     /gene="pssA"
                     /locus_tag="WHR98_000428"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEZ2307159.1"
                     /translation="METPTNTPQRSLRQNSIYLLPNSFTIAALFSAFYAITQSMHGRY
                     ETAAIAVFISMLLDGMDGRVARLTNSQSAFGEQLDSLADMVSFGVAPALIAYKWQLWQ
                     FGKIGYSVAFIYCACAALRLALFNTLIGKVDKRWFIGVPSPTAAALIVGLIWVNHSVE
                     KFPAVHWWALGITLFAGLSMIVQIPFWSFKEINIRRQVPFVGMLLAVLLLLLVTWEPS
                     LVLFLFFLGYSLSGYIMAARRFWKKYRKAD"
     gene            complement(9370..9792)
                     /locus_tag="WHR98_000429"
                     /pseudo
     CDS             complement(9370..9792)
                     /locus_tag="WHR98_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688963.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            9898..10380
                     /locus_tag="WHR98_000430"
     CDS             9898..10380
                     /locus_tag="WHR98_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HEZ2307160.1"
                     /translation="MMKKILAVSALCLMTAAARAADTYGYLAVWQNPQNADDVLQVKT
                     TKEDSTKSEAFAELEAFCKGQDTLAGIAEDEPTGCRSVVSLNNTCVALAYPKALGVMR
                     VENAVVITSPRFTSVHQVALNQCIKKYGVQGQCGLETVYCTSSSYYGGTVRSLIQNLK
                     "
     gene            complement(10432..11643)
                     /locus_tag="WHR98_000431"
     CDS             complement(10432..11643)
                     /locus_tag="WHR98_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
                     /protein_id="HEZ2307161.1"
                     /translation="MNQLKLAVSGAQILFVAFGAMVLVPLLTGLNPALALLGAGLGTL
                     LFQITTKRKVPIFLGSSFAFIAPIIYSVGEWGLPSTMFGLFAAGFMYFVFAALIRWRG
                     LAAVHKLLPPVVIGPVIMVIGLSVAVAASSMAMGQADGKQVIDYTDSLILSGFTFAVT
                     AIVSVFGSRMMKLIPILIGVASGYVLALLMGLVDTASIAHAPWFAVPHFETPQVNWQA
                     ALFMLPVAVAPAIEHIGGIMAIGNVTGKDYTKDPGLDKTLTGDGLGVCVAGLIGGPPV
                     TTYGEVTGAVMITKNSNPVIMTWAAVFAVCMAFFGKFNAFLASIPMPVMGGIMLLLFG
                     TIASLGVKTLIDAKVDLMLPKNLVIVSSVLTTGIGGMTLKLGSFSFAGVGLCAVLAIM
                     LNSLLPDPKES"
     gene            11866..14304
                     /locus_tag="WHR98_000432"
     CDS             11866..14304
                     /locus_tag="WHR98_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HEZ2307162.1"
                     /translation="MTEKSHKKTAKGRAGSPSPTSARNKKADNGARGNKVSERLKAVK
                     ELQKTETKKARPEHVVNLIGDALWLMGLAATLYLAISLISFDMGDPSWSHSSPVVEDV
                     ANWGGLFGAYVADVGYYLFGWSFWWWIAAACVMLYKNFRLHAKQTENEAYNHKIAAAA
                     LFVLTVFSPVLEYFVLGGKYADSLPVGAGGMVGIRVGAVFAWLLGKSGSLLIILVVLL
                     LSLSLLVQISWLEFLNGAGRAVQNRLSALSGKVMALGKRRPNSKTDGVDTQNTRRMVK
                     EAKNITAKPVALPEGSSSNRKSVAVSVAPSPKIQVSLFEDDEPRQAGEYHKPTLNLLR
                     IPDSEPVSINPAELERTAELIESKLAEFGIGVQVVSATSGPVITRYEIEPAQGVKGSQ
                     IVALSKDLARSMSLQSVRIVETIAGKNTMGIELPNDKRQDVMLSEILSSPVFAEAKSK
                     LTVALGKDIAGTPVVGDLAKMPHLLVAGMTGSGKSVGVNGMIMSMLFKATPDEVRFIM
                     IDPKMLELSIYDGIPHLLCPVVTDMREAGQALNWCVAEMEKRYRLLSHAGVRNLEGFN
                     QKVEAAKAAGKPLLNPFSLNPDNPEPLEKLPMIVVVIDELADLMMTERKAVEQQIARL
                     AQKARAAGIHMIVATQRPSVDVVTGLIKANIPTRMAFTVQSKIDSRTILDQMGADELL
                     KYGDSLFLQPGSAEPTRLQGAFVSDDEVHQVVNYVKSQAPADYIEGLLSGEAALETAN
                     IVNPNADSDELFDQAVAYVLESKKTSISSLQRQLRIGYNRAANLMEALENAGVVSPTD
                     LNGSRKILAHKDHL"
     gene            14512..15822
                     /locus_tag="WHR98_000433"
     CDS             14512..15822
                     /locus_tag="WHR98_000433"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003742150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEZ2307163.1"
                     /translation="MSVTVETLENLERKVVLSLPWSEINAETDKKLKQTQRRAKIDGF
                     RPGKAPLKMIAQMYGASAQNDVINELVQRRFYDVTVAQELKVAGFPRFEGVEEQDDKE
                     SFKVAAIFEVFPEVVIGDLSAQEVEKVTASVGDAEVDQTVEILRKQRTRFNHVEREAR
                     NGDRVIIDFEGKIDGEPFAGGASKNYAFVLGAGQMLPEFEAGVVGMKAGESKDVTVNF
                     PEDYHGKDVAGKSAVFTITLNNVSEATLPEVDSDFAKALGIADGDVAKMREEVKKNVS
                     REVERRVNEQTKESVMNALLKAVELKAPVALVNEEAARLANEMKQNFVNQGMADAANL
                     DLPLDMFKEQAERRVSLGLILAKLVDENKLEPTEEQIKAVVANFAESYEDPQEVIDWY
                     YAEPSRLQAPTSLAIESNVVDFVLGKAKVNEKALSFDEVMGAQA"
     gene            15918..16532
                     /gene="clpP"
                     /locus_tag="WHR98_000434"
     CDS             15918..16532
                     /gene="clpP"
                     /locus_tag="WHR98_000434"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEZ2307164.1"
                     /translation="MSFDNYLVPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVTDES
                     ANLVVAQLLFLESENPDKDIFFYINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAAS
                     MGAFLLSAGEKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARELLKIKEKLNRLM
                     AKHCGRDLADLERDTDRDNFMSAEEAKEYGLIDQVLENRASLQF"
     gene            complement(16589..17854)
                     /gene="ispG"
                     /locus_tag="WHR98_000435"
                     /gene_synonym="gcpE"
     CDS             complement(16589..17854)
                     /gene="ispG"
                     /locus_tag="WHR98_000435"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEZ2307165.1"
                     /translation="MNTLQRRKTHQVRIDHITVGSEAPVVIQSMTNTDTADAKATALQ
                     IKELSDAGSEMVRITVNSPEAASKVAEIRRRLDDMGYATPLIGDFHFNGERLLAEFPE
                     CGKALSKYRINPGNVGKGVKGDEKFAFMIRTAAENDKAVRIGVNWGSLDQSLAKRMMD
                     ANLASSAPKPPEEVTKEALIVSALESAEKAVLLGLPEDKIILSCKVSAVQDLIQVYRE
                     LGSRCAYPLHLGLTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGSPRTQEV
                     VVGQEILQTMGLRSFTPMVTACPGCGRTTSTVFQELAQDVQNYLRQKMSIWRTLYPGV
                     ESLNVAVMGCVVNGPGESKLADIGISLPGTGETPVAPVYVDGERKITLKGDNIATEFL
                     AIVEEYVKTNYGENGSKRNQNKIIPIQSL"
     gene            complement(17870..18631)
                     /gene="pilW"
                     /locus_tag="WHR98_000436"
     CDS             complement(17870..18631)
                     /gene="pilW"
                     /locus_tag="WHR98_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HEZ2307166.1"
                     /translation="MPFKPSKRISLLLVLALGACSTSYRPSRAEKANQVSNIKTQLAM
                     EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD
                     SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA
                     EAYLKRSLAAQPQFPPAFKELARTKMLSGQLGDADYYFKKYQSRVEVLQADDLLLGWK
                     IAKALGNAQAAYEYEAQLQANFPYSEELQTVLIGQ"
     gene            complement(18634..19728)
                     /gene="rlmN"
                     /locus_tag="WHR98_000437"
     CDS             complement(18634..19728)
                     /gene="rlmN"
                     /locus_tag="WHR98_000437"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEZ2307167.1"
                     /translation="MKTNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNE
                     MTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGT
                     LCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVM
                     MGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVS
                     LHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHAR
                     ELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDI
                     DAACGQLAGQVQDKTRRQQKWQQILIGQQG"
     gene            complement(19871..20296)
                     /gene="ndk"
                     /locus_tag="WHR98_000438"
     CDS             complement(19871..20296)
                     /gene="ndk"
                     /locus_tag="WHR98_000438"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEZ2307168.1"
                     /translation="MAIERTISIIKPDAVGKNVIGKIYSRFEENGLKIVAAKMKQLTL
                     KEAQEFYAVHKDRPFYAGLVEFMTGGPVMIQVLEGENAVLKNRELMGATNPSEAAEGT
                     IRADFATSVSINAVHGSDSVENAALEIAYFFSQTEICPR"
     gene            complement(20355..21506)
                     /locus_tag="WHR98_000439"
     CDS             complement(20355..21506)
                     /locus_tag="WHR98_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AFG1 family ATPase"
                     /protein_id="HEZ2307169.1"
                     /translation="MSNRDQLFKAPPFENHSPLTWYQAASQLPNFIRDDAQAAAIEHL
                     DRLWTELMMFKRKRNRFLGRSLRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKR
                     RVHFHAFMAEIHQRLKTLKSESNPLKSVAAEIAKETRVLCFDEFHVSDIADAMILGRL
                     LENLLNEGIVLVATSNYAPSELYPQGQNRSSFLPTIALIESSLTVLNVDGGEDYRLRT
                     LRPAEIFFTPANEENEAKLAKLFKEMTGITDLNPGISTIHGREIPHKAESGRAIWFDF
                     RALCFGPRSQSDYLYLAEHYEMVFISGLEQLSPQEKAEARRLTWLIDVLYDFRVKLCA
                     TGAVDVNHIYTEGDFAEEFTRTASRMVEMQSEVYLEQPHLTLSPKASGG"
BASE COUNT         5221 a         5338 c         5871 g         5254 t
ORIGIN      
        1 tcggtatacc gacctactgt atcatatttt ttacagacgg tttttgcttt ggcggcatac
       61 taatgcagat gattgtaaat ggtttccgcc aatgccttgc tgatgccttc cacttgttcc
      121 aaatcctcgc ggctggcggc aatcacgccg cgcaggccgc cgaagcgggt gagcagggct
      181 tggcggcgtt tgctgccgat accggggatt tcgctgagtg aggaagtaac gcgtgctttg
      241 tcgcgttttt tgcgatggcc tgtaatcgca aagcggtgcg attcatcgcg tacggtttgc
      301 aataaatgca aggccgggct gttgggtggc aggcggaaga cttcgccggt aaaaggcagt
      361 ataagttctt ccataccggc tttgcgctca gggcctttgg cgataccgac caaaggaatg
      421 tgcagcccga gttcttccca tactgatacg gctacgccga tttgcccttt gccgccgtca
      481 atcaatacga catcgggcca tttgacggtc tcgccgttgg cttcggcctc ctgcattttg
      541 ccgtaacggc gcgtcaacac ttcgcgcatg gcggcgtagt cgtcgccggg tttggcggtc
      601 gtgatgttgt agcggcggta ttgcgagggc tggatgtttt gctcatcgta cacaacgcag
      661 gacgcaatag tggcctcgcc ttgcgtgtgg ctgatgtcga agcattcgag gcggttgagg
      721 tcgtctgaat tcatgttcag gatttttgcc aactcgtcga tacggtgttg ctggctgctt
      781 tgttgcaggc agcgttgtgc aatcgccatt tgcgcgtttt gttccgccat tttcaaccaa
      841 actttgcgtt cgcctatggt tttggtaacg aactgcattt gtttgccatg ttcgccttcc
      901 aaagcctctt ttagcgcatc gggaacggga aagttgctga tgatgatgtc gggtttgctt
      961 ttgcctagat agtgttgggc gacaaaggct tcggcgtaat cttgtccgtt tggctcggga
     1021 tcgtttttgg tgtcggggaa aaagctttta tcgccaacgt gccgtccgcc gcggatgctg
     1081 acccagtgta cgcagacgag gccgtctgaa acggcaagcg caagcaggtc gatatcgttg
     1141 gggttgttcg ggtttttgct gtcgatgaac tgattactct gcatgatgcc gagcgcttgg
     1201 atttggtcgc ggtagcgggc ggcttcttca aattgcaaat tcgcggcggc ggtctgcatt
     1261 ttgtgttgca gggtgcgggt cagttcgtcg gtcttgccgt tgagaaaagt cgaggcctcg
     1321 cgcacgctgt cgtggtagtc ttcttcgctg atatggccga cacagggtgc gctgcagcgt
     1381 ttgatttgat acagcaggca agggcggtcg cggtgttcga acacgctgtc ttcgcaggtg
     1441 cgcagcatga agactttttg caggacttgg atgctgtcgc gcacggcgtt gctgttagga
     1501 taggggccga agtattggtt cggctttttc agtgtgccac ggtaatacgc catctgcgga
     1561 tattgatgtc cgctgagcat gaggtaggga tagcttttgt cgtcgcggaa aaggatattg
     1621 tatttcggcg acaaggcttt gatgaggttg ttttcgagaa tcagggcttc ggcttcggaa
     1681 cgcgtgatgg tggtttcgat atgatgaacc tgttttacca tcaatgcgat gcgcggcgaa
     1741 tggtcgtttt tttggaaata gccggacacg cgccgcttga ggttgaccgc tttgccgacg
     1801 tataagactt tgccgccttc gtcaaaaaaa cggtacacgc ccggcagctt gggcaggttt
     1861 ttgaggaaga gcgggatatc gaattgttcc ggagaacggt tttctgtatt catatcaatc
     1921 atttgaaaaa cggcttcaga cggcatatcg gcagcggcag ccttatccgt tcggaaaagc
     1981 tgtcgggtgg ttatatgcgg tcaatcgatt tttacccgtt tcaggcgcaa ggcattgctc
     2041 aacacggaaa ccgagcttgc cgccatggcc gcgcctgcga tgacgggatt taaaaagcca
     2101 agcgcggcga gcggaatgcc caagatattg tagaagaagg cgaaaaacag gttttgcttg
     2161 atgtttttca aagtggcttg cgacaccagc agggcatcgg cgagctgatt aaccgaatgc
     2221 tgcatcagcg tggcggacgc ggtgtgttcg gcaacgtccg caccgccttt catggcgaag
     2281 ctgacgtttg cggcggcgag cgcgggcgcg tcgttgatgc cgtcgccgac catcgccacg
     2341 gttttgccgg cggctttgag tttctgcact tcggcggctt tgtcgcgcgg actcatattg
     2401 ccgaaggcgt gagcgatacc cagttgttgg gcgacgtatt cgaccgtgcc ttggttgtcg
     2461 ccgctcatga tgtaaacatc gatattgtgt tttttcagac ggcctatggc ttcggcggta
     2521 tcggctttca acgcgtcggc gagtgcgaat gcgccgatag gtttgccgtt tacagatacg
     2581 gcaaccacac tggcgatttt ccaaacgccg tctgaaaact tcggcaaggt cagttcggca
     2641 aattcggctt tgcctgcttt taccaaaccc gcgcctttta cttcggcggc aatgcctgcg
     2701 ccgacaacgg tttgcgcgtt ttgtgcggcg ggaatcccca agccgcgcgc ttgggcggcg
     2761 gagacgatgg cacgggcgag cggatgggcg gcgttttgtt cgacggtggc ggcgatgcgg
     2821 tacaaagcat cttcgtcaaa gccgctgtcg ggaacgcaat aaacggcggc aacctgcggc
     2881 ttgccttcgg tcagcgtgcc ggttttatcc aacacgacgg catcgacgtg ggcggcttct
     2941 tccattgccg ctgcgtcttt aaaccaaatg ccgtgtttca ctgctttacc catgccgacc
     3001 ataatcgcgg cgggtgtagc cagaccgagc gcacacgggc aggcaatcac caaaacggcg
     3061 acggcgtgca tcagcgcaac cgtccaatcg cctttcacca gccaagtggc gataaaagtc
     3121 aaaagcgcga tgcccacgac agttggcacg aacaccgccg ctgccttgtc tgccacacgc
     3181 gcaatcggtg ctttactgcc ttgtgcttca gagagcgcgt tcatcatgtc gccgagcaat
     3241 gtttggctgc cgagctgtgt ggcgcggtac accacgctgc cttcagtcat cagcgcgccc
     3301 gccaacactt tgctgcctgc ttttttctct tcgggattgg attcaccggt aagatggctc
     3361 tcatccgccc agccgctgcc gctttctatg atgccgtcgg cggcaatgcg ttcgccgtgg
     3421 ttggcgcgga taaggtcgcc gatttgcact tggtcgatgg gaagctgttt ccattcgcca
     3481 ttgcgttgta cattgacttg agtcggcgtg agtttcagta gcaagcccaa gctgttcagg
     3541 ctggattttt tggtgcggtg ttccaaaaat ttgcccagtg acacaaaacc aatcaccatc
     3601 acgcccactt caaaatacac atgcgccata ccgtacgccg cgtgcgggct gaaaaacagc
     3661 atatagacgg aatacaggta aatcgagacc gtgccgatgg taaccagcac gtccatattc
     3721 gccagtccgc ccttaatgct cgcccacgcg cttttgtaaa atggcaccgc cagccaaagt
     3781 tgcaccacac tcgccaatgc aaactgcaac aagggcgaca acatccaatc atgccgtgtc
     3841 caattcagcc cttttagcat catccctacc ataccgataa ggaacgggat attgatggcc
     3901 agcaaaagcc acaacctcca gccgatatgg tgttctgctt cgggttgcgg caatgtatct
     3961 tccgtctttt ccttcgcgcc gtaaccggtt ttctcaatga ttttggcaat gtcggcagcg
     4021 gaagttttgc tgtcgtcaaa cgtaacctgc gcctcctcgc tggcgaagtt cactcccgct
     4081 gatttgacaa agtctttttt gttcaacact ttttcaatgc gcgaagcaca tgcctgacag
     4141 gtcatgcctt cgatttggaa acggattttt tgttgcataa gcgtgattcc tgctttgata
     4201 ttcagacggc agttaaggct gcgggatgcc gtctgagcgc cggtatggtc aaaatttctc
     4261 aaacgcgccg ataattcgag tagaatccga aaacttgaca cagcaaagga aaaacaatgt
     4321 cccaacaccg caaactgatt attttgggtt ccggccccgc cggatacacc gccgccgtct
     4381 atgccgcgcg cgccaattta aaccccgtca ttattacagg tatcgcgcaa ggcgggcaac
     4441 tgatgaccac caccgaagtg gacaactggc ctgccgatgc cgacggcgtg caagggccgg
     4501 aattgatggc gcggtttctc gcccacgccg aacgtttcgg aacggaaatc atttttgacc
     4561 aaatcaacgc cgtcgatctg caaaaacgcc cgtttacgct caaaggcgat atgggcgagt
     4621 acacttgcga tgccctgatt gtcgcaacag gcgcgtccgc caaatacctc ggtttgccga
     4681 gtgaggaagc gtttgcagga aaaggcgttt ccgcttgtgc cacctgcgac ggtttcttct
     4741 ataaaaacca agatgttgcc gtagttggcg gcggcaatac ggcagttgaa gaggcactct
     4801 accttgccaa tatcgccaaa accgttaccc tgatccaccg ccgcagcgag ttccgtgccg
     4861 aaaaaatcat gatcgacaaa ctgatgaaac gcgtggaaga gggcaaaatc atcctcaagc
     4921 tggaaagcaa cctgcaagaa gtactgggcg acgatcgggg cgtaaacggc gcattattaa
     4981 aaaacaacga cggttctgag caacaaattg ccgtcagcgg catttttatc gccatcgggc
     5041 acaagccgaa taccgatatt ttcaaaggtc agttggaaat ggacgaagcc ggctacctga
     5101 aaaccaaagg cggcacggcg gacaatgtcg gtgcaaccaa tatcgaaggc gtatgggcgg
     5161 cgggcgacgt aaaagaccat acctaccgtc aggcaattac cagcgcggct tccggctgtc
     5221 aggcggcttt ggacgcggaa cgctggctgg gcagccaaaa catttgaatg ccgtctgaaa
     5281 ccgaaatttt cggcggaatg caaatttttc gcaccaaatc cttgattccg tcggcaaacc
     5341 ccaatataat gcctgctctt tgaaccttgc cttctgcttt cgcatggcag aaggctgttt
     5401 ttaccatcca taaggagata acatgcgtca ttacgagatc gtgtttatcg ttcatcctga
     5461 tcaaagcgag caagtgcctg ctatggttga acgttacaaa accatgattg ccgaagcaaa
     5521 cggtaagatt caccgtttgg aagattgggg tcgccgccaa ctggcttacc cgattaacaa
     5581 aatccataaa gcccattacg ttttgatgaa catcgaaacc actcccgaag tggttgaaga
     5641 gctggaaacc gcattccgct tcaatgatgc cgtattgcgc catctaacca tcaaaaccaa
     5701 acacgccgtt accgaagcat cccctatgtt gggtggtgaa aaggctaaga acctgttgag
     5761 cggcgcgtct gaagaagcgg tcgcccaata attgggattc aataatcttg tttcgcttgc
     5821 cgtgttaatt gaaaaggttt tccctattcg atatacgcct gccggaatcc ctgttttaga
     5881 tattatttta aagcacgaat cgtggcagga ggaaaacggg cagcaatgcc ttgtccaatt
     5941 ggaaattccg gcacggattt taggcaggca ggcggaagag tggcagtatc ggcaaggtgt
     6001 atatgttcac gtcgaaggtt ttttagctca aaaaagcaga cgttccctta tgccgatgct
     6061 caggatacaa aatattcaag aatataaagg ttaaacgaca atggctcgtc aatcattcaa
     6121 acgtagaaaa ttctgccgtt tcacggctga aaaaatccaa gaagtcgatt acaaacaagt
     6181 tgatttgctg aaagacttta tctctgaaaa cggtaaaatc attcctgcac gcatcacagg
     6241 aacgaaggca ttctaccaac gccaattggc tgttgccgta aaacgcgcac gcttcctggc
     6301 tctgctgcct tacaccgacc aacacaaata attttggaga ttgaatcatg caaattattc
     6361 tgttagaaaa aatcggcggt ctgggcaact tgggcgacat cgtaaccgtt aaaaacggct
     6421 acgcccgcaa ctttctaatt cccgcaggta aggcaaaacg tgcgaccgaa gcgaatatga
     6481 aagagtttga agcacgccgt gccgaattgg aagccaaaca ggctgaaatt ttggcagatg
     6541 cccgagtccg tcaggaaaaa ttggacggtc aaaccattac cgttgcacaa aaagccggtg
     6601 tggacggtcg cctgttcggt tccgtcacca atgctgatat tgcggctgca atcgttgctg
     6661 ccggcatcga agccgtgaaa gcaaatgtac gtctgccgaa cggtcctctg aaagccgttg
     6721 gcgagtacga agtggaagtg gctttgcaca ctgatgccgt tgctaaaatt accgttgccg
     6781 tcgttgccgc aaccgagtaa ttgaaattat cagatgccgt ctgaaaccct gccgattgtc
     6841 ggaatgtggt ttcagacggt atttgttttg ttttccgtat attctgcaaa aatcgggatg
     6901 gttgttttta tagtggatta aatttaaacc agtacagcgt tgcctcgcct tgccgtgcta
     6961 tctgtattgt ctgcggcttc gtcgccttgt cctgattttt gttaatccac tatatttgcc
     7021 tgtggtcttt gcaggaatag tttgttaacg aaatttgatg cataaaatgc gccaaaaaat
     7081 attggctgtg ttttaatata gtgttgataa gcgtacctgg cttcaatata ctcaatagga
     7141 taggtctctt cctaaccgaa aaaataattg tcttttccct tgcaaataat tgaaatcaac
     7201 agattactaa aacacagcca aaatattcaa ttgacaaaaa cttttctgat tttgagaaat
     7261 ctgtgaaaat caggggatta tttattttga aaatggtatc gggcataaaa tttggctgtg
     7321 tttcaatatg gtgctgataa catactttgt ttcaaaatgt tcaataggat aacttcctga
     7381 ttgaccgaaa aataatggcc ttttcccttg caagcagttg aaatcaacag attgtcaaaa
     7441 tacatcctaa aaatttaata acttatatat atgattgcaa aggttgcggc ttgtatgccg
     7501 gtcattatgg cggaaatacc gtttgggagg cagccgcatc gcgtggaatc ggcacggcag
     7561 gcgatgcgcc gatgccttcg ggcgtgaagg cggggcaatc ggcagtttgg aaaaaggcaa
     7621 tggaatctgt gggcagaaga agttaagggt aaaagtcggg cgcacggtca ggttgtctgt
     7681 ccttttgtcg gaacaggaga ctgggcagct ttgtcctgat taattgcttg tgcaaacggt
     7741 aaaaaggttt tttcgtgtgt tttaaagcag gttgtacagc atttttccgg caatcaaaag
     7801 cagcataatg ccgaaggatt ttttgagttt ggcagaagaa agtttgtggg cggttttgac
     7861 accgagcggg gcaaaggcaa tggttgccgc gctgaggacg gcgacggcgg gcaggtaaag
     7921 gaagcccagt gacccttcgg gcaatcctgc aatattcagg ccgttgagca gatacgatat
     7981 tgcgccggag agtgcaatcg gccaggcaag gccggatgat gtgccgatgg ctttatgggc
     8041 ggggaagccg cagtggatta agaaggggac ggaaagtgaa ccgccgccta tgccgaccca
     8101 gctcgacatt gtgccgaaca gtgtggaaac cgcagtcagt ccgggcagct tgggcagcgg
     8161 gcgggatgcc gtctgacgac cggtatgcag tgttttgaat gcgacggcgg ttaaaaacag
     8221 gatgaagaaa atttgaagcc cgaacgctgg gatatatttt gcggagagtg cgccagcgaa
     8281 tacgccgaat accatacccg gcatcatcgt aaatacggtt ttccagtcga ccgcctgttt
     8341 tttgtgctgc cccagcatac tggaaaaggc ggtgaagacc atgacggcga aggatgtgcc
     8401 gacggcgagg tgttgcgcgt aaggatgttg tgccaaaccc tgcaaatcaa gcacccataa
     8461 aacgacaggg acaatcagcg tgccgccgcc tacgccgaac aggccggcaa taaaacctgc
     8521 cgcactgcct acggcaagca ggattaagat aatgtcccaa tgccacattt aatccgcctt
     8581 tctgtatttt ttccaaaatc ggcgtgccgc cataatgtag ccggacaggc tgtatccgag
     8641 aaagaacagg aagaggacga gcgacggttc ccaagtgacc agaagcagca gtaagacggc
     8701 aagcagcatt ccgacaaagg ggacttgtct gcggatgttg atttctttaa aactccaaaa
     8761 agggatttgg acaatcatcg acaggccggc aaacagtgtg atgcctaatg cccaccagtg
     8821 gacggcgggg aatttttcga cgctgtggtt gacccaaatc agcccgacaa tcagcgcggc
     8881 ggcagtcgga ctgggcacgc cgataaacca gcgtttgtcc accttgccga tgagtgtgtt
     8941 gaacagggcg aggcgcaggg cggcgcaggc gcagtagatg aaggcgacgg aataaccgat
     9001 tttgccgaac tgccaaagct gccatttgta ggcaatcaga gcgggagcaa cgccgaagct
     9061 gaccatatcg gcaaggctgt cgagctgctc cccgaacgcg ctttggctgt tggtcagccg
     9121 cgccacgcgc ccgtccatac cgtccagcaa catagagatg aataccgcga tggcggcggt
     9181 ttcataacgt ccgtgcatgg attgggtgat tgcgtaaaat gcggaaaaca gcgcggcgat
     9241 ggtaaaggag ttgggcagca ggtagatact gttttgacgc agggagcgtt gcggggtgtt
     9301 ggtcggggtt tccatagctg aagtgtctca cggacgtgga gaatcgatag gggattataa
     9361 cccaaaccat tatcgaacaa tacgcccttt aggatgaagc cctcggaggc ggtttgtttt
     9421 tctgatggcg gatgctttgc ggggcggttt gactctgcct gccaccgggt gtgttgtttc
     9481 ggatttttgc cggatggata ttgttgccgg gcatttctgg gcttgccgga aggtatcggg
     9541 gggagggcat cggaatatgc ggcgcgccgt tcaaaccggg gcgacgtttc cctattttca
     9601 gggggttgca ggtttcaaca aattgaaaga tattttttgc atttccgacc gtatgctgat
     9661 tttgaaacgg gataaattat aggacaaggt ttttcgcccg ccgcaaaggt tggccgcaat
     9721 gcagtctgaa aacaacggct tgccgctaag gcggcggtat gcggatttgc gctgccgaaa
     9781 ccggtttgcc atacccggcg gtgcaatctg cggggaggga taagccgata aggcgggact
     9841 tatcctgttt tttgtttata atgcaacaga atttggacga accgtcggga atttatcatg
     9901 atgaaaaaga tactggccgt atcggcacta tgcctgatga ctgcggcggc acgggctgcc
     9961 gatacttacg gctatctcgc cgtttggcag aatccgcaga atgcggacga tgttttgcag
    10021 gttaaaacca caaaagaaga ttcgacgaaa agcgaagcgt ttgccgagtt ggaagccttt
    10081 tgcaaaggtc aggacacgct tgcgggcatt gccgaagacg agccgaccgg atgccggtcg
    10141 gtcgtgtcgc tgaacaatac ctgtgtcgcg ctggcatacc cgaaagcctt gggcgtgatg
    10201 cgcgttgaaa acgccgtcgt gattacttct ccgcgtttta cgagcgttca tcaggtcgca
    10261 ctcaaccagt gcatcaaaaa atacggcgta cagggacaat gcggcttgga aacagtgtat
    10321 tgcacatctt cttcttatta cgggggaact gtgcgctctt tgattcaaaa tctcaaataa
    10381 aacgggaaat gccgtctgaa agatgttcag acggcatttc tatatcgacg gtcaggattc
    10441 tttcggatcg ggcagcaggc tgttcaacat aatggcaagt acggcgcaca agcccacgcc
    10501 ggcaaagctg aagctgccca atttgagcgt catgccgccg atgcccgtgg tcagtaccga
    10561 gctgacgatg accaggtttt tcggcagcat caaatcgact ttggcatcaa tcagcgtttt
    10621 cacgcccaaa gaagcaatcg tgccgaacag cagcagcata atgccgccca ttactggcat
    10681 cggaatggaa gccaaaaacg cattgaattt gccgaaaaac gccatgcaga cggcaaaaac
    10741 cgccgcccaa gtcatgatga cggggttgct gtttttggta atcatcaccg cacccgttac
    10801 ttcgccgtag gtcgtaaccg gcgggccgcc gatcagaccc gcaacgcata cgcccaaacc
    10861 gtcgcccgta agggttttgt ccaagcccgg gtcttttgtg tagtctttcc ccgttacatt
    10921 gccgattgcc atgatgccgc cgatgtgctc gatggcgggg gcgacggcaa cgggcagcat
    10981 aaacagtgcc gcctgccagt tgacctgagg cgtttcaaaa tggggaacgg caaaccaggg
    11041 cgcgtgtgca atgcttgccg tgtccaccag tcccatcagc agtgccaaaa cataacccga
    11101 agcgacaccg atcaagatgg gaatcagctt catcatcctg ctgccgaaaa ccgatacgat
    11161 ggcggtaacg gcaaaggtaa agccggaaag aatcagcgaa tcggtatagt cgatgacctg
    11221 tttgccgtcc gcctgaccca ttgccatgct gcttgccgcc acggcaacag acagaccgat
    11281 gaccatgatg acggggccga tgacgaccgg aggcagcagt ttgtgtaccg ctgccagtcc
    11341 gcgccaacgg atcagcgcgg caaacacaaa atacataaag ccggcggcaa acagtccgaa
    11401 catggtggaa ggcagccccc attcgccgac ggagtagata atcggtgcga taaaggcaaa
    11461 cgaagaacca agaaaaatcg gcactttgcg tttggttgtg atttggaaca gcagcgttcc
    11521 caagcctgcg cccaaaagcg caagagccgg attcagaccg gtcagcaggg gaaccagcac
    11581 cattgcgccg aatgccacaa ataaaatctg cgcgccggaa acggcaagtt tcagttggtt
    11641 cataccatct tctttcaatc ggttcaaacg gcacggatta tactggtttg ccgagggtct
    11701 gcgtaaaaat acatatggcg ggcaacagat atgccgtctg aaaggcaatg tctgtctgtt
    11761 gcaggatgaa agcaggagaa atggagtata atccgacact ttccatattc aatccgcaag
    11821 ccgtccggct tccttatttc agacggcatt ttccggtaat acggcatgac agaaaaatcc
    11881 cataaaaaaa cagcaaaagg cagggcggga agcccgtccc caacgtccgc acgcaacaag
    11941 aaagccgaca acggcgcacg gggcaataaa gtttccgagc ggctcaaggc ggtcaaagag
    12001 ttgcagaaaa ccgaaaccaa aaaggcgcgt cccgaacatg tcgtcaacct tatcggcgac
    12061 gcactgtggc tgatgggttt ggcggcaacc ctgtatttgg cgatttccct gatcagtttc
    12121 gatatgggcg atccgtcttg gtcgcacagt tcgccggttg tggaagatgt cgccaattgg
    12181 ggcggactgt tcggcgcgta tgttgccgat gtcggctatt atcttttcgg ctggtcgttc
    12241 tggtggtgga tagcggctgc ctgcgtcatg ctgtataaaa attttcgtct gcacgcaaaa
    12301 cagacggaaa acgaggcata caaccacaaa atcgctgccg ccgcgctgtt tgtcctgacg
    12361 gtcttcagcc ccgtcttgga gtattttgtg ctgggcggaa aatatgccga ctccctgcct
    12421 gtcggagcag gcggtatggt cggcatacgc gtcggcgcag tgtttgcgtg gctgctgggg
    12481 aaatcgggca gcctgctgat tatcttggtt gttctgctgt tgtcgttgtc cctgctggtg
    12541 cagatttcat ggctggaatt tttgaacggt gcgggcaggg cggttcaaaa ccgcctgagt
    12601 gccttatccg gcaaggtcat ggctttagga aaacgccggc cgaatagcaa aacagacggt
    12661 gtcgataccc aaaatacacg gcgcatggta aaagaagcca agaatattac ggccaaaccc
    12721 gttgccttgc ccgaaggcag cagcagcaac cgcaaatccg tcgcggtttc cgtcgcgccg
    12781 tcgcccaaaa ttcaggtttc tctgtttgaa gatgacgaac ctcggcaggc gggcgaatac
    12841 cacaagccta cattgaacct attgcggatt cctgacagcg aacccgtcag catcaatccc
    12901 gccgaattgg agcgcactgc cgaactgatc gaatccaaac tggcagaatt cggcatcggc
    12961 gtacaagtcg tatccgccac atccggtccc gtcatcacgc gctacgaaat cgaacccgcg
    13021 caaggtgtta aaggcagcca aattgttgcc ttgtcgaaag atttggcacg ctctatgtcg
    13081 ctgcaatccg tgcgtatcgt cgaaaccatc gcaggtaaaa acacgatggg catcgagttg
    13141 cccaacgaca aacgccaaga cgtgatgttg agcgaaatct tgtcctcgcc cgtgtttgcc
    13201 gaagccaaat ccaagctgac cgtcgcgctg ggcaaagaca ttgccggtac ccccgttgtc
    13261 ggcgacttgg cgaaaatgcc gcaccttttg gtcgccggta tgactggttc gggcaagtcc
    13321 gtcggcgtga acggcatgat tatgtctatg cttttcaaag ctacgcccga cgaagtccgc
    13381 tttatcatga tagacccgaa aatgcttgag ttgagcattt acgacggcat tccgcacctg
    13441 ctctgtcccg tcgtgaccga tatgcgcgaa gcagggcagg cgttgaactg gtgcgtcgcc
    13501 gaaatggaaa aacgctaccg cctgctttcc cacgccggtg tacgcaatct ggaaggcttc
    13561 aaccaaaaag tcgaagccgc aaaagcggca ggcaagccgc tgctcaatcc gttcagtctg
    13621 aaccccgaca accccgagcc tttggaaaaa ctgccgatga ttgtggtcgt tatcgacgaa
    13681 cttgccgacc tgatgatgac cgaacgcaaa gccgtcgagc agcaaatcgc ccgtctcgcc
    13741 caaaaagcgc gcgccgccgg tatccatatg attgtcgcca cccaacgtcc cagtgtcgat
    13801 gtcgttaccg gcctgattaa agccaacatc ccgacgcgta tggcgtttac cgtgcaaagc
    13861 aaaatcgaca gccgtaccat cctcgaccaa atgggcgcgg acgaactgct caaatatggc
    13921 gattcgctgt tcctccagcc cggcagtgcc gaaccgactc gcctgcaagg cgcgtttgtt
    13981 tcagacgacg aagtacatca agtcgtcaac tacgtcaaat cgcaagcccc agccgactat
    14041 attgaaggtc tgctcagcgg cgaggccgcg ctggaaactg ccaatatcgt taatccgaat
    14101 gcagacagcg acgaattgtt cgatcaggca gtcgcctatg ttttggaaag caaaaaaacc
    14161 tccatttcgt ctttgcagcg gcagttgcgt atcggctata accgcgcggc aaacctgatg
    14221 gaggcactgg aaaatgcggg tgtcgtttct cccaccgacc tcaacggcag ccgtaaaatt
    14281 ttggcgcaca aggaccattt gtagcccgta ttgcaaaatg ccgtctgaac ggcggaattc
    14341 gcgtttcaga cggcatatta tgtttcaggc gaaacattgt gatatacttg ccagctaaaa
    14401 tttccccttt gcggcaatgc ggttcaaata tcgtaccgtt gcgctgtttg cttccccatg
    14461 tagggaaaaa agtttatcat tttatcaaca caacaaattt aagggcttat gatgagcgta
    14521 actgttgaaa ctttagaaaa tctggaacgc aaagtagtgt tgtccctgcc ttggtccgaa
    14581 atcaacgcag aaaccgataa aaaactgaaa caaacccaac gccgtgcaaa aatcgacggt
    14641 ttccgtccgg gtaaagcacc tttaaaaatg attgcccaaa tgtacggtgc gagcgcgcaa
    14701 aacgacgtga tcaacgagct ggtgcaacgc cgcttctacg atgttaccgt tgcccaagag
    14761 ttgaaagtgg caggcttccc ccgttttgaa ggcgttgaag aacaagacga taaagagtct
    14821 ttcaaagttg ccgccatttt tgaagtgttc cccgaagtcg ttatcggcga tttgtctgca
    14881 caagaagttg aaaaagtaac cgcttccgtc ggtgatgccg aagtggacca aaccgtagaa
    14941 atcctgcgca aacaacgcac ccgcttcaac catgtcgaac gcgaagcccg aaacggcgac
    15001 cgcgtcatca ttgactttga aggcaaaatc gacggcgaac cttttgccgg cggcgcatcc
    15061 aaaaactacg ccttcgtatt gggcgcaggt caaatgctgc ctgaatttga agccggcgta
    15121 gtcggcatga aggcgggcga aagcaaagac gttaccgtca atttccctga agactaccac
    15181 ggtaaagacg ttgccggtaa atccgctgtc ttcaccatca cattgaacaa cgtgtctgaa
    15241 gctactttgc ctgaagttga ttccgatttt gctaaagcat tgggtattgc cgacggcgac
    15301 gtggccaaaa tgcgcgaaga agtgaagaaa aatgtcagcc gcgaagtgga acgccgcgtg
    15361 aacgaacaaa ccaaagaatc cgtaatgaac gcgctgctca aagccgtaga gctgaaagca
    15421 cctgttgctt tggtcaatga agaagccgca cgcttggcaa acgaaatgaa acaaaatttt
    15481 gttaaccaag gtatggctga tgccgcgaac ttggatctgc ctttggatat gttcaaagaa
    15541 caagccgaac gccgcgtgtc tttgggtctg attttggcca aactggttga tgaaaacaaa
    15601 ctggaaccga ctgaggagca aatcaaagcc gttgtcgcca acttcgcaga aagctacgaa
    15661 gatcctcaag aagtaatcga ctggtactac gcagagcctt cccgcctgca agccccgact
    15721 tctttggcga tagaaagcaa cgtcgttgat ttcgttttgg gtaaagccaa agtaaacgaa
    15781 aaagctttgt cttttgacga agtgatgggc gcgcaagcct gattatcctg aaaatgccgt
    15841 cttagggcag tttttgaaag caccgaagcc gcttttaaag cccgctttgg tgcttttaca
    15901 tcatgaaagg agacgaaatg tcttttgata actatcttgt ccctaccgtt atcgagcaga
    15961 gcggtcgcgg tgagcgtgca ttcgatatct attcccggct tttgaaagag cgcatcgtat
    16021 tcttggtcgg cccggtaacc gacgagtccg ccaatctggt ggttgcccaa ctgttgtttt
    16081 tggaaagtga gaatccggat aaggatattt tcttctatat taactcgccg ggcggttcgg
    16141 taacggccgg tatgtcgatt tacgacacca tgaattttat caagcccgat gtatcgactt
    16201 tgtgcttggg gcaggcagca agtatgggcg cgttcttatt gtcggcaggc gaaaaaggca
    16261 aacgtttcgc cctgcccaac agccggatta tgattcacca gcctttaatc agcggcggct
    16321 tgggcggtca ggcatccgat attgaaattc acgcacgcga actgttgaaa atcaaagaaa
    16381 aactcaaccg cctgatggcg aaacattgcg gccgcgattt ggcagatttg gagcgcgaca
    16441 ccgaccgtga taatttcatg tctgccgaag aagcaaaaga atatggtttg atcgaccaag
    16501 ttttggaaaa ccgcgcttct ttacagtttt aataagaaat ctgagagaaa caaatgccgt
    16561 ctgaaaacag ttcaggacgg catttgtctt atagggactg tatagggatg attttgttct
    16621 ggttgcgctt ggagccgttt tcaccatagt tggttttgac atattcctct acaatagcta
    16681 ggaattcagt tgcaatatta tcacctttca gtgttatttt gcgctccccg tccacataaa
    16741 ccggcgcgac gggtgtttct cccgtaccgg gcaggctgat gccgatgtcg gccaatttgc
    16801 tttctccggg cccattgaca acgcagccca ttacggcaac gttcagggat tcaaccccag
    16861 gataaagggt acgccatata gacatttttt ggcgcaggta attttgaaca tcttgtgcca
    16921 gctcttgaaa tacggtactg gtggtacgcc cgcagccggg gcaggcggta accatcggcg
    16981 taaacgaacg caatcccata gtctgtaaaa tctcttgccc gacgacgacc tcctgagtac
    17041 gcgggctgcc aggttccgga gtcagtgaaa tgcggatggt gtcgccgatt ccttcttgaa
    17101 gcaagacgga taatgccgcc gttgatgcga caatgccttt gctgcccata ccggcttcgg
    17161 tcaaacccaa atgcagcgga taggcgcaac ggctgcccag ttcgcggtaa acctgaatca
    17221 aatcctgaac cgcgctgact ttgcacgaca ggatgatttt gtcttcgggc agtcccaata
    17281 gaacggcttt ttcggcagat tccaaagcgg agacaatcag tgcttccttc gtcacttctt
    17341 cgggcggttt cggcgcggaa gaagcgaggt tggcatccat catacgtttg gcgaggcttt
    17401 gatccaaaga accccagttt acgccgatgc ggacggcttt atcgttttca gcagcagtcc
    17461 gaatcataaa ggcaaatttt tcatcgcctt ttacgccttt gccgacattg ccgggattga
    17521 tgcggtattt ggacaatgct ttgccgcatt cgggaaattc cgccaacagg cgttcgccgt
    17581 tgaagtggaa atcgccgata agtggtgtgg catagcccat atcgtccaag cggcggcgga
    17641 tttcggcaac tttggacgcg gcttcggggc tgttgacggt aatacgcacc atttcggatc
    17701 cggcatcgct caattcctta atctgcaatg cggtggcttt tgcatcggca gtgtcggtgt
    17761 tggtcataga ttggataacg acgggtgctt ctgaaccgac ggtaatatga tcgatgcgga
    17821 cttgatgcgt cttgcggcgt tggagtgtgt tcatatggtt tgaatctgtt tattgaccga
    17881 tgaggacggt ttgcaattct tccgagtagg ggaaattcgc ctgcaattgt gcttcatatt
    17941 cgtatgccgc ctgtgcgttg ccgagggctt tggcaatttt ccagcctagc agcaaatcat
    18001 cggcctgaag gacttctacc ctgctttggt attttttaaa gtagtaatcg gcatcgccca
    18061 actgcccgga cagcattttg gtgcgcgcca gttctttaaa tgcgggtggg aactgcggct
    18121 gggcggcgag ggaacgtttc aaataggctt ccgccaatcc gaattgcccc tgttttgcgc
    18181 tgcatatgcc tttattcagg ttggcaatat aaggggtcgg gtaggtgggg tcggccaggg
    18241 ctttgtcgaa atatgccata gattcggcag ggcggttgag cctgccgcac aggaaccagc
    18301 cgtagttgtt gttgatttcg gcactgtcgg gtttgatgga gagggcttgc cggaaacttt
    18361 cctgcgcctt gtcgttaact ttcaggtatt gatagatttc ggcacggacc agccaggcaa
    18421 gctcgttttt agggtccgat ttcagggcgt cttcaatact tgccgtcgcc tgacggtagt
    18481 cctgaccgcg catatattcc attgccaact gggttttgat attggaaacc tgattggctt
    18541 tttctgcccg cgaggggcgg taggaagtgc tgcacgcgcc caaggcaagg acaagtaata
    18601 aagagattcg tttggatggc ttaaaaggca taattacccc tgttgtccga ttaaaatctg
    18661 ctgccatttt tgttggcggc gcgttttatc ctgaacctgc cccgccaact gtccgcaggc
    18721 ggcatcgatg tcgtcgccgc gcgtttttcg tacggtaacg acaaatcctg cctgctgcaa
    18781 aatatcgcgg aacacacgga tgttctcatt gctggagcgt tcgtatccag agtttggaaa
    18841 gggattgaac ggaatcagat tgaacttgca gggaacatct ttgaccagtt cgatcagttc
    18901 gcgcgcatgt tgcgccttat cgtttattcc gtccaacatg acgtattcga aagtgatgaa
    18961 atccctgggt gctttgacta gatagcgttg gcatgcagcc atcaattctt tcaagggata
    19021 ttttttgttc aacggtacga tttggttgcg gacttcgtca ttggaagcgt ggagggaaac
    19081 cgccaaagcc accggcatga catcgcgcaa cctgtccatt tggggaacca tacccgaagt
    19141 ggaaacggtt acgcggcggc ggctcaaacc gtagccgtgg tcgtccagca tgatgcttaa
    19201 ggcggtaacg acattgtcga agttcgccat cggctcgccc atacccatca tcactacatt
    19261 ggaaattacg cgttcgtttt tcggtgtaac acccatcgct ttgtttgccc accacaattg
    19321 cccgatgatt tcggcagcag tcaaattgcg gttgaagccc tgccggccgg tcgaacaaaa
    19381 tgtacattcc aaagcgcagc cgacttgtga ggaaatgcag agcgtgccgc gatccgattc
    19441 ggggatgaag acggtttcca ccccgttgcc cgtaccgaca tccaaaagcc attttcgagt
    19501 gccgtctgaa gatttttgag acatcatcag cttgggaatt tcgatgcctg cctgttcgtt
    19561 cagtttatgg cgcaacgatt ttgccaaatc ggtcatttcg ttaaaatttt gcgcgccgga
    19621 ttggtgcatc caacgcataa cctgtttggc acggaagggt ttttcgccca tatcggcaaa
    19681 atgtcgggtc agcccttgaa ggtcgtagtt gagcagattg gttttcatgt gtttgtgttt
    19741 ttcttaaatt aaggcttcaa ataaaaaatt gcagggcagg caagtttgat ttgaagcctt
    19801 ttgcgacaga gttttcagac ggcatggata tatttatgcc gtctgaagag gagttgtgcg
    19861 gtgtattgta tcaacggggg cagatttcgg tttggctgaa aaagtaggca atttccaaag
    19921 cggcattttc cacgctgtcg gaaccgtgta cggcattaat gctgaccgaa gtggcaaagt
    19981 ccgcgcgtat cgtgccttcg gcggcttcgg aaggattagt tgcacccatc agttcgcggt
    20041 ttttcaggac ggcgttttca ccctctaata cctgaatcat aaccggaccg ccggtcataa
    20101 attcaaccaa tccggcgtag aaggggcggt ctttatgaac cgcataaaat tcttgcgcct
    20161 ctttgagagt aagctgcttc attttggcgg caacgatttt cagaccgttc tcctcaaagc
    20221 ggctgtatat tttgccgata acatttttgc cgacggcatc gggtttgatg atggagatgg
    20281 tacgttcaat cgccatgcta tatccttatt tttacttaag aagaatcaaa tcggtattct
    20341 atcaaaaaaa taacttatcc gcctgaagcc ttgggagata gggtcaggtg cggctgttcc
    20401 aaataaactt cggactgcat ttcgaccatc cggctggcgg tgcgggtaaa ttcttcggca
    20461 aaatcgcctt ccgtatagat atggttgaca tctaccgcgc cggtggcaca cagtttgacc
    20521 cggaaatcgt agagtacgtc aatcagccaa gtcagccgcc gcgcctccgc cttttcttgc
    20581 ggtgagagtt gttccaaacc tgaaataaaa accatttcat aatgttcggc caaatacaga
    20641 tagtcggact gtgagcgggg accgaagcac agtgcgcgga aatcaaacca tatggcacgg
    20701 ccggactcgg ctttgtgggg aatctcccga ccgtggatgg tgctgatgcc ggggttcaaa
    20761 tcggtaatgc ctgtcatttc tttgaacagt tttgccagtt ttgcctcatt ttcttcattg
    20821 gcaggcgtaa agaaaatctc ggcggggcgg agggtacgca gtcggtagtc ttcaccgccg
    20881 tcaacgttta agacggtcag gctggactcg atgagcgcga ttgtgggaag aaaactgctc
    20941 cggttttgac cttgcgggta gagttcggaa ggcgcgtagt ttgaagtcgc caccaaaaca
    21001 atgccctcgt taagcaggtt ttccagcaga cggcctaaaa tcattgcatc cgcaatatcg
    21061 ctgacatgaa attcgtcaaa acataatacg cgggtttctt tggcaatctc ggcggcaacg
    21121 gatttcaacg ggttgctttc gcttttcagg gttttcagcc tctggtggat ttctgccata
    21181 aaggcatgaa agtggacgcg gcgtttgcgg cggtaaggga ggcagccgaa aaaagcgtcc
    21241 atcagaaagc ttttgccgcg tccgaccccg ccatagaaat aaagcccttt ggggacttgc
    21301 ggggaacgca aactcctgcc taaaaaacgg tttcttttgc gtttgaacat catcaattcg
    21361 gtccaaagcc gatcgaggtg ttcgatggct gctgcctgcg cgtcgtcgcg gatgaagttg
    21421 ggcagttgtg aggcagcctg ataccaggtc agcgggctgt gattttcaaa cggcggggct
    21481 ttaaaaagtt ggtctctatt actcatattt aaccttgtta tacttcttgc ggctaagaaa
    21541 gaaaatgctt accgtcggta ttataaatga tttccttcaa acttggcatt ttccgtggaa
    21601 aagaataatg acgcgcacaa gggggtatga gcaaaggcgg cgtttcaata tggtgcagat
    21661 atgagctcaa atgcctttta tagt
//
LOCUS       DAWGNT010000017        21608 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.017, whole genome shotgun sequence.
ACCESSION   DAWGNT010000017 DAWGNT010000000
VERSION     DAWGNT010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21608
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.017"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(49..1230)
                     /gene="odhB"
                     /locus_tag="WHR98_000440"
     CDS             complement(49..1230)
                     /gene="odhB"
                     /locus_tag="WHR98_000440"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HEZ2307170.1"
                     /translation="MIIDVKVPMLSESVSEGTLLEWKKKVGEAVARDEILIDIETDKV
                     VLEVPSPQAGVLVEIVAQDGETVVADQVLARIDTAATAAAEAPAAAPAEAAPAAAPAA
                     AQNNAAMPAAAKLAAETGVDVNALQGSGRDGRVLKEDVQNAAAKPAAAAAPAVTLPAG
                     ARPEERVPMSRLRARVAERLLASQQENAILTTFNEVNMKPIMDLRAKYKEKFEKEHGV
                     KLGFMSFFVKAAVAALKKYPVVNASVDGKDIVYHGYFDIGIAIGSPRGLVVPILRDAD
                     QMSIADIEQAIVDYAKKAKDGKIAIEDLTGGTFSITNGGTFGSMMSTPIINPPQSAIL
                     GMHATKERAVVENGQVVVRPMMYLALSYDHRIIDGREAVLTLVAIKDALEDPARLLLD
                     L"
     gene            complement(1330..4158)
                     /locus_tag="WHR98_000441"
     CDS             complement(1330..4158)
                     /locus_tag="WHR98_000441"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HEZ2307171.1"
                     /translation="MMDEKLNFSYLFGSNAPYIEELYEAFLENPDAVDEKWKQYFTDL
                     SKQPGTVAVDVAHTPIRESFVTLAKKKIASAVAGGADEAMLKKQVSVLRLISAYRIQG
                     VGAAQLDPLKRIPPRDIEALDPKFHGLSDADMALQFNMGEGDFANRGKLPLSQIISNL
                     KQTYCGHIALEYIYIPNTEERRWVRNYFESVLSTPHYNADQKRRILKEMTAAETLERY
                     LHTKYVGQKRFGVEGGESAIAGLNYLIQNAGKDGVEEVIIGMAHRGRLNVLVNILGKK
                     PGDLFAEFEGRAEIKLPSGDVKYHMGFSSDIATPHGPMHVSLAFNPSHLEIVNPVVEG
                     SARAKQKRLGENGRDKVLPVLIHGDSAFIGLGVNQATFNLSKTRGYTTGGTVHIVINN
                     QIGFTTSDIRDTRSTVHCTDIAKMVSAPVIHVNGDDPERVCFAIQAALDYRKKFHKDI
                     VIDVVCYRKWGHNEGDDPTLTQPMMYKKVSQHPGARALYTEQLIAEGVVTQAEADGYI
                     QAYRDALDKGEHVEQTTLSNFQRTQIDWSKYQGKDWREHIETGLPAADIERLTEKFTA
                     VPEGFALHPTAKRVIEARKAMASGKQAIDWGMAETLAYASLVTKGHGVRISGEDSGRG
                     TFSHRHAVLHDQKREKWDDGTYVPLRHMGEGMGEFLVIDSILNEEAVMAFEYGFACSA
                     PDKLTIWEAQFGDFANGAQVTIDQFLSSGETKWGRLCGLTTILPHGYDGQGPEHSSAR
                     VERWLQLCSENNMQVIMPSEASQMFHLLQRQVLGSYRKPLVIFMSKRLLRFKGAMSPL
                     ENFTEGSTFRPVIGDTAERASNDSVKRVVLCAGQVYYDLEAGRAERKLEDDVAIVRVE
                     QLYPFPYDEVKAELAKYPNAKSVVWAQEEPKNQGAFYQIRHRIEDVISEEQKLSYAGR
                     PSSASPAVGYSSKHIAQLKQLVEDALVL"
     gene            complement(4363..5646)
                     /gene="gltA"
                     /locus_tag="WHR98_000442"
     CDS             complement(4363..5646)
                     /gene="gltA"
                     /locus_tag="WHR98_000442"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HEZ2307172.1"
                     /translation="MSKSIKLNVPGQAGLELPVLEASIGHDVVDIRGLTKNTGLFSFD
                     PGFVSTASCESKITYIDGDQGLLYYRGYPIEQLAEKSDYLEVCYLLIYGELPTPEQKA
                     EFDNTVRRHTMVHEQLTWFFRGFRRDAHPMAMMVGVVGALSAFYQDSLDISNPEHRKI
                     AIYRLISKIPTIAAMCYRYSNGLPFNYPKNNLSYSENFLHMMFATPCEDYKPNPVLAR
                     ALDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGASHGGANEAVLKML
                     DEIGDVSRVAEYMEGVKQRKYRLMGFGHRVYRNMDPRASIMRETCYEVLKELGLEDSP
                     KFKLAMELEQIALKDPFFIERKLYPNVDFYSGIVLSALGIPTEMFTVIFALSRSVGWI
                     SHWHEMISDPSLKIGRPRQLYTGSERRDYVPPGER"
     gene            complement(5758..6006)
                     /locus_tag="WHR98_000443"
     CDS             complement(5758..6006)
                     /locus_tag="WHR98_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HEZ2307173.1"
                     /translation="MMVFDDIAKRKIRFQTRRGLLELDLIFGRFMEKEFEHLSDKELS
                     EFSEILEFQDQELLALINGHSETDKGHLIPMLEKIRRA"
     gene            complement(6010..6717)
                     /locus_tag="WHR98_000444"
     CDS             complement(6010..6717)
                     /locus_tag="WHR98_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HEZ2307174.1"
                     /translation="MEKMSFEIYRYNPDVDAKPYMQRYELELEPTDVKLLDALVRLKA
                     QDDTLSFRRSCREGICGSDGMNINGKNGLACLTDLRGLKQPVKIRPLPGLPVIRDLIV
                     DMTQFFKQYHSVKPYVVNDNPIDADKERLQTQEERKELDGLYECILCACCSTACPSFW
                     WNPDKFVGPSGLLNAYRFIADSRDTITNERLDNLNDPYRLFRCHTIMNCVDVCPKHLN
                     PTRAIGKIKEIMLKRAV"
     gene            complement(6838..8601)
                     /gene="sdhA"
                     /locus_tag="WHR98_000445"
     CDS             complement(6838..8601)
                     /gene="sdhA"
                     /locus_tag="WHR98_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HEZ2307175.1"
                     /translation="MGFPVRKFDAVIVGGGGAGLRAALQLSKSGLNCAVLSKVFPTRS
                     HTVAAQGGISASLGNVQEDRWDWHMYDTVKGSDWLGDQDAIEFMCRAAPEAVIELEHM
                     GMPFDRVESGKIYQRPFGGHTAEHGKRAVERACAVADRTGHAMLHTLYQQNVRANTQF
                     FVEWTAQDLIRDENGDVVGVTAMEMETGEVYIFHAKAVMFATGGGGRIYASSTNAYMN
                     TGDGLGICARAGIPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILLNADGERFMERY
                     APTVKDLASRDVVSRAMAMEIYEGRGCGKNKDHVLLKIDHIGAEKIMEKLPGIREISI
                     QFAGIDPIKDPIPVVPTTHYMMGGIPTNYQGEVVVPQGDEYEVPVKGLYAAGECACAS
                     VHGANRLGTNSLLDLVVFGKAAGDSMIKFIKEQSDWKPLPADAGELTRQRIERLDNQT
                     DGENVDALRRELQRSVQLHAGVFRTDEILSKGVREVMAIAERVKRTEIKDKSKVWNTA
                     RIEALELDNLIEVAKATLVSAEARKESRGAHASDDHPERDDENWMKHTLYHSDANTLS
                     YKPVHTKPLSVEYIKPAKRVY"
     gene            complement(8604..8945)
                     /gene="sdhD"
                     /locus_tag="WHR98_000446"
     CDS             complement(8604..8945)
                     /gene="sdhD"
                     /locus_tag="WHR98_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HEZ2307176.1"
                     /translation="MVERKLTGAHYGLRDWAMQRATAVIMLIYTVALLVVLFSLPKEY
                     SAWQAFFSQTWVKVFTQVSFIAVFLHAWVGIRDLWMDYIKPFGVRLFLQVATIVWLVG
                     CLVYSIKVIWG"
     gene            complement(8939..9316)
                     /gene="sdhC"
                     /locus_tag="WHR98_000447"
     CDS             complement(8939..9316)
                     /gene="sdhC"
                     /locus_tag="WHR98_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HEZ2307177.1"
                     /translation="MSAKPRPVYLDLPNIRLPIPGIVSILHRISGVGLFIMLPFLLYF
                     LSGTLSQESAFETYRAIVSHPLVKLVLIGVLWAYLHHSLAGIRFLFLDAHKGLELNTA
                     RNTAKAVFASALVLTVVLGALLW"
     gene            complement(9595..10998)
                     /locus_tag="WHR98_000448"
     CDS             complement(9595..10998)
                     /locus_tag="WHR98_000448"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEZ2307178.1"
                     /translation="MKKIQADVVVIGGGTAGMGAFRNARLHSDNVYLIENNVFGTTCA
                     RVGCMPSKLLIAAAEARHHALHTDPFGVHLDKDSIVVNGEEVMQRVKSERDRFVGFVV
                     ADVEEWPADKRIMGSAKFIDEHTVQIDEHTQITAKSFVIATGSRPVILPQWQSLGNRL
                     IINDDVFSWDTLPKRVAVFGPGVIGLELGQALHRLGVKVEIFGLGGIIGGISDPVVSD
                     EAKAVFGEELKLHLDAKTEVKLDADGNVEVHWEQDGEKGVFVAEYMLAAVGRRPNVDN
                     IGLENINIEKDARGVPVADPLTMQTSIPHIFIAGDASNQLPLLHEAADQGKIAGDNAG
                     RYPNIGGGLRRSTIGVVFTSPQIGFVGLKYAQVAAQYQADEFVIGEVSFKNQGRSRVM
                     LVNKGHMRLYAEKATGRFIGAEIVGPAAEHLAHLLAWAHQMKMTVPQMLDMPFYHPVI
                     EEGLRTALRDADAKLKA"
     gene            complement(11247..11984)
                     /locus_tag="WHR98_000449"
     CDS             complement(11247..11984)
                     /locus_tag="WHR98_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HEZ2307179.1"
                     /translation="MALQDRTGQKVPSVVFRTRVGDTWKDVSTDDLFKGKKVVVFSLP
                     GAFTPTCSSSHLPRYNELFGAFKENGVDAIYCVSVNDTFVMNAWAAEEESDNIYMIPD
                     GNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVNDGVVEKMFIEPEEPGDPFKVSDADTM
                     LQFVAPDWKAQESVAIFTKPGCQFCAKAKQALQDKGLSYEEIVLGKDATVTSVRAITG
                     KMTAPQVFIGGKYIGGSEDLEAYLAKN"
     gene            complement(12263..14539)
                     /gene="metE"
                     /locus_tag="WHR98_000450"
     CDS             complement(12263..14539)
                     /gene="metE"
                     /locus_tag="WHR98_000450"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEZ2307180.1"
                     /translation="MTTLHFSGFPRVGAFRELKFAQEKYWRKEISEQELLAVAKDLRE
                     KNWKHQAAANADFVAVGDFTFYDHILDLQVATGAIPARFGFDSQNLSLEQFFQLARGN
                     KDQFAIEMTKWFDTNYHYLVPEFHADTEFKANAKHYVQQLQEAQALGLKAKPTVVGPL
                     TFLWVGKEKGTVEFNRLSLLQKLLPVYVEILNALVEAGAEWIQIDEPALAVDLPKEWV
                     EAYKDVYATLSKVSAKILLSTYFGSVAEHAALLKSLPVDGLHIDLVRAPEQLDAFADY
                     DKVLSAGVIDGRNIWCANLNKVLETVEPLQAKLGDRLWISSSCSLLHTPFDLSVEEKL
                     RANKPDLYSWLAFTLQKTQELRVLKAALNEGRDSVAEELAASQAAADSRANSSEIHRA
                     DVAKRLADLPANADQRKSPFADRIKAQQAWLNLPLLPTTNIGSFPQTTEIRQARAAFK
                     KGELSAADYEAAMKKEIALVVEEQEKLDLDVLVHGEAERNDMVEYFGELLSGFAFTQY
                     GWVQSYGSRCVKPPIIFGDVSRPEAMTVAWSTYAQSLTKRPMKGMLTGPVTILQWSFV
                     RNDIPRATVCKQIALALNDEVLDLEKAGIKVIQIDEPAIREGLPLKRADWDAYLNWAG
                     ESFRLSSTGCEDSTQIHTHMCYSEFNDILPAIAAMDADVITIETSRSDMELLTAFGEF
                     KYPNDIGPGVYDIHSPRVPTEAEVEHLLRKAIEVVPVERLWVNPDCGLKTRGWKETLE
                     QLQVMMNVTRKLRAELAK"
     gene            complement(14675..15553)
                     /gene="metF"
                     /locus_tag="WHR98_000451"
     CDS             complement(14675..15553)
                     /gene="metF"
                     /locus_tag="WHR98_000451"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HEZ2307181.1"
                     /translation="MNYAKEINALNNSLSDLKGDINVSFEFFPPKNEQMETMLWDSIH
                     RLQTLHPKFVSVTYGANSGERDRTHGIVKRIKQETGLEAAPHLTGIDASPDELRQIAK
                     DYWDSGIRRIVALRGDEPPGYEKKPFYAEDLVKLLRSVADFDISVAAYPEVHPEAKSA
                     QADLINLKRKIDAGANHVITQFFFDVERYLRFRDRCVMLGIDVEIVPGILPVTNFKQL
                     GKMAQVTNVKIPSWLSQMYEGLDDDQGTRNLVAASIAIDMVKVLSREGVKDFHFYTLN
                     RSELTYAICHILGVRP"
     gene            15753..16028
                     /locus_tag="WHR98_000452"
     CDS             15753..16028
                     /locus_tag="WHR98_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HEZ2307182.1"
                     /translation="MKPNIHPDNYRTVLFFDSSANEGWLIRSCAETHGKTMVWTDGKE
                     YPLFSLDTSSASHPVYTGKQRNVNTEGRASKFNQRFQSVMSSFRKDK"
     gene            16028..16153
                     /gene="ykgO"
                     /locus_tag="WHR98_000453"
     CDS             16028..16153
                     /gene="ykgO"
                     /locus_tag="WHR98_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HEZ2307183.1"
                     /translation="MQVLSSLKTAKQRHRDCQIVRRRGKVYVICKSNPRFKARQR"
     gene            complement(16259..16459)
                     /locus_tag="WHR98_000454"
     CDS             complement(16259..16459)
                     /locus_tag="WHR98_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307184.1"
                     /translation="MIGRLFRIFFFFALAALIINRLFSRKQKRALRDVAKISAWVLLG
                     AAAATLFWYLFMLYFKHIPDSY"
     gene            16617..17756
                     /locus_tag="WHR98_000455"
     CDS             16617..17756
                     /locus_tag="WHR98_000455"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HEZ2307185.1"
                     /translation="MSQNASVGIVTPQKIPFEMPLVLENGKTLPRFDLMIETYGELNA
                     EKNNAVLICHALSGNHHVAGRHSAEDKYTGWWDNMVGPGKPIDTERFFVVGLNNLGGC
                     DGSSGPLSINPETGREYGADFPVVTVKDWVKSQAALADYLGIGQWAAVVGGSLGGMQA
                     LQWAISYPERVRHALVIASAPKLSTQNIAFNDVARQAILTDPDFNEGHYRSRNTVPAR
                     GLRIARMMGHITYLAEDGLGKKFGRDLRSNGYQYGYGVEFEVESYLRYQGDKFVGRFD
                     ANTYLLMTKALDYFDPAADFGNSLTRAVQDVQAKFFVASFSTDWRFAPERSHELVKAL
                     IAAQKSVQYIEVKSAHGHDAFLMEDEAYMRAVAAYMNNVYKECQQ"
     gene            17753..18334
                     /gene="metW"
                     /locus_tag="WHR98_000456"
     CDS             17753..18334
                     /gene="metW"
                     /locus_tag="WHR98_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HEZ2307186.1"
                     /translation="MNLRDDLQLIYDRIPEGSRVLDLGCGDGELLAALVEHKKCSGYG
                     IEIDTDSVIAAMSRGVNVIQADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLM
                     RVAKQAIVSFPNFGYWRNRVQIALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAK
                     NNIRVLERAVMTGNRQVKHFPNLLGSLAFYRVG"
     gene            18451..19284
                     /locus_tag="WHR98_000457"
     CDS             18451..19284
                     /locus_tag="WHR98_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="d-alanine-poly(phosphoribitol) ligase"
                     /protein_id="HEZ2307187.1"
                     /translation="MKNKTSSLLLWLAAMMLTACSPNKDDTKEVGASAAPSSVSSASS
                     QSDLQPAASAPDNVKQAESAPPSNCTSLHPATGIDDLMQQIAEHIDSDCLFALSHHEL
                     ETRFGLPGGGYDNIQRLLFPDIRPEDPDYHQKIILAIEDLRYGKRTISRQAQDALMEQ
                     ERRLREATLLLIQGSQETRGQGEEPKRARYFEVSATSAYLSRHNNGLGGNFQYISQLP
                     GYLKIHGEMLENQSLFRLSNRERNPDKPFLDIHFDENGKITRIVVYEKNIYFNPNLGR
                     R"
     gene            complement(19334..19894)
                     /gene="efp"
                     /locus_tag="WHR98_000458"
     CDS             complement(19334..19894)
                     /gene="efp"
                     /locus_tag="WHR98_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEZ2307188.1"
                     /translation="MKTAQELRAGNVFMVGNDPMVVQKTEYIKGGRSSAKVSMKLKNL
                     LTGAASETIYKADDKFDVVILSRKNCTYSYFADPMYVFMDEEFNQYEIEADNIGDALK
                     FIVDGMEDQCEVTFYEGNPISVELPTIIVREVEYTEPAVKGDTSGKVMKTARLVGGTE
                     IQVMSYIENGDKIEIDTRTGEFRKRA"
     gene            complement(19937..21085)
                     /gene="earP"
                     /locus_tag="WHR98_000459"
     CDS             complement(19937..21085)
                     /gene="earP"
                     /locus_tag="WHR98_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P maturation arginine
                     rhamnosyltransferase EarP"
                     /protein_id="HEZ2307189.1"
                     /translation="MNTPPFVCWIFCKVIDNFGDIGVSWRLARVLHRELGWQVHLWTD
                     DVSALRALCPDLPDVPCVHQDIHVRTWHSDAADIDTAPVPDVVIETFACDLPENVLHI
                     IRRHKPLWLNWEYLSAEESNERLHLMPSPQEGVQKYFWFMGFSEKSGGLIRERDYCEA
                     VRFDSGALRKRLMLPEKNAPEWLLFGYRSDVWAKWLEMWRQAGSPMTLLLAGTQIIDS
                     LKQSGVIPQDALQNDGDVFQTASVRLVKIPFVPQQDFDQLLHLADCAVIRGEDSFVRA
                     QLAGKPFFWHIYPQDENVHLDKLHAFWDKAHGFYSPETASAHRRLSDDLNGGEALSAT
                     QRLECWQTLQQHQNGWRQGAEEWSRYLFGQPSASEKLAAFVSKHQKIR"
     gene            complement(21104..21382)
                     /locus_tag="WHR98_000460"
     CDS             complement(21104..21382)
                     /locus_tag="WHR98_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307190.1"
                     /translation="MSRNLLVRWLVVCLIPLATLAVFVANPPEDKPQHLINGIILACE
                     ATFLFKFVLFDTIKHHLKQEFDLKRQTMLLFIPIVLLVVYLFHYFGAF"
BASE COUNT         5323 a         5468 c         5478 g         5339 t
ORIGIN      
        1 aaattcagac ggccttttca ttaacaaata aaaggccgtc tgaaacgatt acagatccaa
       61 caacaggcgg gctgggtctt ccaacgcgtc tttaatggct accaaggtca atacagcttc
      121 gcggccgtca atgatacggt ggtcgtaaga cagagccaga tacatcattg gacggacaac
      181 aacttggccg ttttcaacca cagcgcgctc tttagtggcg tgcataccca aaatcgcaga
      241 ttgaggcgga ttgatgatcg gggtggacat catagaaccg aaagtaccgc cgttggtaat
      301 actgaatgta ccgccggtca gatcttcgat agcgattttg ccgtctttgg cttttttcgc
      361 gtaatcaaca attgcttgtt cgatgtcggc aatgctcatt tggtcggcat cgcgcaggat
      421 tggtacaacc aaaccgcgtg ggctgccgat ggcgataccg atatcgaagt agccgtgata
      481 cacgatgtct ttgccgtcaa cagaagcatt cacaaccgga tattttttca gggcggcaac
      541 cgcggcttta acgaagaagg acataaagcc cagttttacg ccgtgttctt tctcgaattt
      601 ttctttgtac ttcgcacgca agtccatgat tggcttcatg ttgacttcgt tgaatgtagt
      661 cagaatggcg ttttcttgtt gagaagccaa gagacgttct gcaacacggg cacgcaggcg
      721 gctcatcggt acgcgttctt cgggacgtgc gccggcagga agtgtaacag caggagcagc
      781 ggctgcggca ggtttggcag cggcattttg tacatcttct ttcaatacgc gaccgtcacg
      841 gccggaacct tgcaatgcgt tcacgtcaac accggtttcg gcagccagtt tggcggcggc
      901 aggcatagca gcgttgtttt gtgcagcagc aggagctgcg gctggggctg cttcggcagg
      961 agcagcggct ggagcttcag cggcggcagt agcagcggta tcgatacgtg ccaaaacttg
     1021 gtcggcaaca acggtttcac cgtcttgcgc tacgatttca accaatacgc cggcttgtgg
     1081 agaaggtact tccaaaacca ctttgtccgt ttcgatatcg atcaggattt cgtcacgggc
     1141 aactgcttcg ccaacttttt tcttccattc caagagcgtg ccttcagata cgctttcaga
     1201 cagcataggt acttttacat caataatcat tttgtgtctc caatggccct ttcagacggc
     1261 ctgttgtgtg tttttcattc tgcatatggg tgttccgcct gagcagcctc agacggaatg
     1321 ctacttggct tacaatacca aagcgtcttc aaccaattgt ttcaattgag caatgtgttt
     1381 gcttgagtag cccactgcag gcgatgcgct gcttggacga ccggcataag acagtttttg
     1441 ctcttcgctg ataacgtctt cgatgcggtg gcggatttgg tagaacgcgc cttggttttt
     1501 cggctcttct tgtgcccaaa ccacagattt tgcgttcgga tatttcgcca gttcggcttt
     1561 aacctcgtcg tatgggaacg gatacagctg ctcaacgcgg acaatagcga catcatcttc
     1621 cagtttacgt tcggctcgac cggcttccaa gtcatagtaa acctgaccgg cacacaatac
     1681 cacgcgtttc acgctgtcgt tgcttgcgcg ttcggcggta tcgccgataa ccggacggaa
     1741 agtcgaacct tcggtgaagt tttccagcgg gctcattgcc cctttgaatc gcaacaggcg
     1801 tttggacatg aaaatcacca gcggtttgcg gtatgaacct aagacttgac gttgcaagag
     1861 gtggaacatt tgcgacgctt cagatggcat gatgacttgc atattgttct cagaacacag
     1921 ttgcaaccaa cgttctacgc gtgcagaaga gtgctcaggg ccttgaccgt cgtaaccgtg
     1981 cggcaggatg gtggtcagac cgcacaagcg accccatttg gtttcgcctg aagacaggaa
     2041 ttggtcaatc gtcacttgcg cgccgttggc gaagtcaccg aattgagctt cccaaatggt
     2101 gagcttgtca ggagcggagc aggcaaagcc gtactcgaac gccatcacgg cctcttcgtt
     2161 caagatggag tcgataacca ggaactcgcc catgccttcg cccatatggc gcagaggaac
     2221 ataagtaccg tcgtcccatt tttcgcgttt ttgatcgtgc aatacggcgt ggcggtgcga
     2281 gaacgtaccg cggccggagt cctcaccgga gatacgcacg ccatgacctt tggttacaag
     2341 gcttgcgtat gccaaggttt cggccatacc ccagtcgatg gcttgtttgc cggatgccat
     2401 ggctttacgc gcttcaatca cacgttttgc agtcggatgc agggcaaagc cttccggtac
     2461 ggcggtaaat ttctcggtaa gacgctcaat atccgcggca ggcaaaccgg tttcgatgtg
     2521 ttcgcgccaa tctttacctt ggtatttgct ccagtcaatt tgtgtgcgtt ggaagttgct
     2581 caacgttgtt tgctcgacgt gttcgccttt atccaaagca tcacggtagg cttggatgta
     2641 accgtcagcc tcggcttggg ttaccacgcc ttcggcaatc agttgctcgg tgtacaaagc
     2701 acgcgcaccc gggtgttgcg atactttttt gtacatcatc ggttgggtca aggtcggatc
     2761 gtcgccctcg ttgtggcccc atttacggta gcagacaacg tcgatcacga tgtctttatg
     2821 gaattttttg cggtaatcca aagcggcttg gatggcaaag caaacacgct caggatcatc
     2881 gccgttcaca tggataaccg gagcggaaac catttttgcg atatcggtac agtgtacggt
     2941 tgaacgggta tcgcggatat cggaagtggt aaagccgatt tgattgttga tgacgatatg
     3001 aaccgtaccg ccggtggtat aaccgcgcgt tttagacaga ttgaatgtcg cttggttgac
     3061 acccaaaccg ataaatgcgg agtcgccgtg aatcaatacg ggcaagactt tatcgcggcc
     3121 gttttcgccc aaacgtttct gcttggcgcg tgcagaacct tcgactaccg ggttaacgat
     3181 ttccaagtgt gacgggttga acgccaaaga aacgtgcatc ggaccatgtg gagtggcgat
     3241 gtcggagctg aagcccatgt ggtatttcac gtcgccgcta ggcaatttga tttcggcacg
     3301 gccttcaaac tcagcgaaca aatctccggg ttttttaccc aaaatgttca ccaaaacatt
     3361 cagacggcca cggtgcgcca taccgatgat gacttcttcc acgccgtctt taccggcgtt
     3421 ttgaatcagg tagttcaaac cggcaatcgc gctttcgccg ccttcgacac cgaaacgttt
     3481 ctgaccgaca tatttggtat gcagataacg ttccaaagtc tcggcagcag tcatctcttt
     3541 caagatacgg cgtttttgat cggcattgta atgcggtgtg gacaatacgc tttcaaaata
     3601 attgcgtacc cagcggcgct cttcggtatt gggaatatag atatattcca atgcgatgtg
     3661 gccgcagtag gtttgtttga ggttgctgat gatttgggac aaaggcagtt tgccgcgatt
     3721 ggcaaaatcg ccctcgccca tattgaattg aagcgccata tcggcatctg acagaccgtg
     3781 gaatttcgga tcgagggctt caatatcgcg cggggggata cgtttgagcg gatcaagttg
     3841 ggctgcaccc acgccttgga tacgataggc ggaaatcagc cgtaaaacgc tgacttgctt
     3901 tttcagcatt gcctcatccg caccgcccgc aacggcagat gcaattttct ttttcgccaa
     3961 agtaacaaat gattcgcgaa tcggtgtgtg tgcgacatcg acagcaaccg tccccggctg
     4021 tttgctcaaa tcggtgaaat actgcttcca tttttcatca accgcatcgg ggttttccaa
     4081 aaaagcctcg tacaattcct caatgtaagg tgcgtttgaa ccgaacaggt aagagaaatt
     4141 gagtttttcg tccatcatgg cgtgcgctct tttctttaaa atataaacaa agggtagaag
     4201 tccgcgtcct gacggctaaa ctgatgccgc ctgaaaagac attttattct accctatttt
     4261 aaaccggatt gcttgtcttg atttcatccg actacaatca gacggattcg ggaaacaatc
     4321 cggttctctg atattgcctg tttgacaata tattaatgta tgttacctct cgcctggcgg
     4381 cacataatcg cggcgttccg aaccggtata aagctggcgc gggcggccga tttttagcga
     4441 aggatcgcta atcatctcgt gccagtgcga aatccagccc acgctgcgcg acagggcgaa
     4501 gatgacggta aacatttcgg tcgggatgcc cagcgcggac aggacgatgc cggaatagaa
     4561 atcgacgttt ggatacagtt tgcgttcgat aaagaacggg tctttcagcg caatctgttc
     4621 caattccatc gccagtttga atttcggact gtcttccaag cccaattcct tcaaaacttc
     4681 atagcaggtt tcgcgcataa tgctggcacg cggatccata ttgcggtaca cgcggtgacc
     4741 gaagcccatc agacggtatt tgcgttgttt cacgccttcc atatattcgg caacacggga
     4801 cacatctccg atttcatcca acattttcaa cacggcttca ttagcaccgc catgggacgc
     4861 accccacagg caggcgatac cggcagcgat acaggcaaac gggttcgcac ccgaagagcc
     4921 tgccagacgg acggttgaag ttgaggcgtt ttgctcgtgg tcggcatgca aaataaagat
     4981 gcggtcgagt gcgcgtgcca aaacgggatt gggtttgtag tcttcacacg gcgtggcgaa
     5041 catcatatga aggaagtttt cggaataaga aagattattc ttcggataat tgaacggcag
     5101 accgtttgaa tagcggtagc acattgccgc aatggtcggg attttggaaa tcaggcggta
     5161 aatcgcgatt ttgcggtgtt cgggattgct aatgtccaag ctgtcttggt agaacgcaga
     5221 cagtgcgccg accacgccga ccatcatcgc catcggatgc gcgtcgcggc ggaagccccg
     5281 gaagaaccaa gtcagctgtt catgcaccat cgtgtggcgg cggacggtat tgtcaaattc
     5341 tgccttttgc tcgggagtcg gcagttcgcc gtaaatcaac aggtagcaga cttccaaata
     5401 atcggacttt tcggccagct gctcgatggg gtatccgcga taataaagca agccttgatc
     5461 gccgtcgatg taagtaattt tagactcaca gcttgcggtt gaaacaaatc cggggtcgaa
     5521 ggaaaacaaa cctgtatttt ttgtcagccc ccgaatgtca accacatcgt gcccgatgct
     5581 ggcttccaat accggcagct ccaaacctgc ctgacccggt acgttgagtt tgattgattt
     5641 ggacatatta ttgctccttt gcaagttata acccacgtta ctgcatccgc agcacgttct
     5701 ttgccttcag acggcttttg cattttgaaa tctgcctgca ggcagatttc agatgcctca
     5761 tgcccgtctg attttttcaa gcatcgggat aaggtgccct ttgtccgttt ccgaatgccc
     5821 gttaatcaag gcaagcaatt cttgatcttg aaattcaagg atttcggaaa actcggacag
     5881 ctctttatcg ctcaaatgct cgaattcttt ttccataaac ctgccgaaga ttaaatctaa
     5941 ttccaacaat ccccggcggg tttgaaaacg gattttccgt ttggcaatat cgtcaaaaac
     6001 catcatttct taaacggccc gtttcaacat aatctcttta atcttaccga tggctcgggt
     6061 cggattcaag tgtttaggac atacgtctac gcagttcata atggtgtggc aacggaacaa
     6121 acggtatggg tcgttcagat tatccaaacg ctcattagtg atggtatcac ggctgtccgc
     6181 aatgaaacgg taagcattca gcaaaccgga cggaccaacg aatttatcag ggttccacca
     6241 aaatgacggg caggcagtcg aacagcaggc gcacaaaata cactcgtaca aaccgtccaa
     6301 ctctttacgc tcttcctgag tttgcagacg ctctttgtcc gcatcaatcg gattatcgtt
     6361 gacaacataa ggtttgacgg aatggtattg tttgaagaac tgggtcatat ccacaatcag
     6421 gtcgcggata acaggcagac ctggcagagg acggatttta actggctgtt tcaagccacg
     6481 cagatcggtc aaacacgcca agccgttttt gccgttgatg ttcataccgt ccgatccgca
     6541 aatgccttcg cggcaggagc ggcggaaaga caaggtatcg tcttgtgctt tcaggcgtac
     6601 caaagcatcc aaaagtttca cgtcggtcgg ttccaattcc aactcgtaac gctgcatata
     6661 aggcttggca tcaacatccg ggttgtaacg gtaaatttca aaactcattt tttccatgag
     6721 aagtgttcct tttctcatca actgcccaat gattttgtat tataaattca agcagttcaa
     6781 tgtgggtatg gttagatttc agacgagctt atgaggcgaa aaccgtctga aaacgcatca
     6841 ataaacgcgc ttggccggtt tgatgtattc cacgctcaaa ggcttggtgt gcaccggttt
     6901 gtaggacaag gtattggcat ctgaatggta cagcgtatgt ttcatccagt tttcatcatc
     6961 gcgctcagga tggtcgtctg aagcgtgcgc accgcgtgat tctttacgtg cttcggcaga
     7021 caccaaagtc gctttcgcca cttcaattag gttatccaat tccaaagcct cgatacgcgc
     7081 ggtattccac actttgctct tgtctttgat ttcggtacgt ttcacacgct cggcaatcgc
     7141 catgacttct cgaacgcctt tgctcagaat ctcatcagta cggaacacgc cggcgtgcag
     7201 ttgtacagag cgttgcagtt cgcgacgcag cgcatcgacg ttttcgccat cagtttgatt
     7261 gtccaaacgc tcgatacgtt ggcgggtcag ctcgcccgca tccgcaggca aaggtttcca
     7321 gtcgctttgc tctttgatga atttaatcat gctgtcgccg gcagctttac cgaacaccac
     7381 caagtccagc agagagttcg tacccaaacg gttcgcaccg tgtacggaag cacaggcgca
     7441 ctcacctgcg gcatacaggc cttttacagg cacttcgtat tcgtctcctt gcggcacaac
     7501 gacttcgcct tggtagttgg tcggaatacc gcccatcata tagtgggtag tcggcacaac
     7561 gggaatcggg tctttaatcg gatcgatacc agcgaactga atggaaatct cgcggatgcc
     7621 cggcagtttt tccataattt tttctgcgcc gatatggtcg attttcagta agacatggtc
     7681 tttgttttta ccgcagccgc gaccttcgta gatttccatc gccatcgcgc gggaaacaac
     7741 gtcgcgagaa gccaagtctt ttacggtcgg cgcatagcgt tccataaagc gttcgccgtc
     7801 ggcattcaac agaataccgc cctcgccgcg tacgccttcg gtaatcaaca cgcccgcacc
     7861 tgccacgccg gtcgggtgga attgccagaa ttccatgtct tccaacggga tacctgcacg
     7921 cgcacaaata cccaaaccat cgccggtatt catataggca ttggtagaag aagcataaat
     7981 acgaccgcca ccgccggtag caaacatcac agctttagcg tggaaaatat aaacttcgcc
     8041 ggtttccatt tccatggcgg ttacgccgac gacatcgccg ttttcatcac gaatcaaatc
     8101 ttgtgccgtc cattccacaa agaattgcgt attggcacgg acgttttgtt ggtacaaagt
     8161 atgcagcatc gcatgacctg tacggtcggc aaccgcacag gcgcgttcta ccgcgcgttt
     8221 accgtgttcg gcagtatggc cgccgaaagg acgctgataa attttaccgc tttccacacg
     8281 gtcaaaaggc atacccatgt gttccaactc aattacggct tcaggcgcgg cgcggcacat
     8341 aaactcaatc gcatcttggt cgcccaacca gtcggaacct ttcacggtat cgtacatgtg
     8401 ccagtcccaa cgatcttcct gcacattacc cagagaggcg gaaataccgc cctgcgccgc
     8461 tacggtatgc gaacgggtcg ggaacacttt agacaaaacg gcacaattca gaccggattt
     8521 ggataattgg agggctgcgc gtaaacctgc accaccaccg ccgacaatca cggcatcaaa
     8581 cttgcgaaca ggaaaaccca tacttacccc caaattactt taattgaata caccaagcag
     8641 ccgaccagcc agacgatggt ggcaacctgc aaaaacaaac gcacgccgaa gggtttgata
     8701 tagtccatcc acaaatcgcg gatacccacc caagcgtgca agaatacggc gatgaagctc
     8761 acttgggtaa atacttttac ccaagtttga ctaaaaaatg cctgccatgc cgaatattct
     8821 ttaggcaggg aaaatagaac cactaaaagt gcaacggtat aaatcaacat aataaccgca
     8881 gtcgcacgtt gcatcgccca atcgcgcaaa ccgtaatggg caccggtcaa tttacgttct
     8941 accataacaa cgctcccaaa acgacagtca aaaccaatgc agaagcaaat acggctttag
     9001 cggtattgcg cgcagtattc agctcaaggc ctttgtgcgc atccaaaaat aaaaagcgga
     9061 taccggcgag agaatggtgc agataagccc acaatacacc gattaaaacc agcttgacca
     9121 aaggatggga aacaatggca cggtaagttt caaatgcaga ctcttgactc agggtaccgg
     9181 acaggaaata cagcaggaaa ggcagcataa taaacagccc gaccccactg atgcggtgaa
     9241 ggatggaaac tatcccgggt atcggcagac ggatgttcgg caaatccaga taaacaggac
     9301 gcggtttggc agacatagtc aattcctctg tagttatata tcgactcaaa aaccgtaaac
     9361 ccattgctac actgggttac ataaacgtta atttacctgt tttatcccat tttgaacagt
     9421 gtattttaaa aacaaactga tagattttga caaacacgcg tggaaacagc agattaaaag
     9481 aaagattttt agttttgccg cccccttccc gacacggtat cagcatccga ccccatcccc
     9541 aaaaacaaaa tgccgtctga aaaaatttca gacggcattg ttttgccata tcggtcaggc
     9601 tttcaatttc gcatcggcat cgcgcaacgc ggtacgcaga ccttcctcga taacgggatg
     9661 gtagaacggc atatccagca tttgcggaac ggtcatcttc atttgatgcg cccatgccaa
     9721 caagtgcgcc aaatgttcgg cggcagggcc tacgatttcc gcgccgataa agcggccggt
     9781 ggctttttcg gcatacaggc gcatatggcc tttgtttacc agcatcacgc ggctgcggcc
     9841 ttggtttttg aacgatactt cgccgatgac aaattcgtcg gcttggtatt gcgcggcaac
     9901 ctgcgcgtat ttcagaccga caaagccgat ttgcggactg gtaaacacca cgccgatggt
     9961 gctgcgccgc aaaccgccgc cgatattcgg gtaacggcct gcattgtcgc cggcaatctt
    10021 gccttggtcg gcagcttcgt gcagcagggg cagttggttg gacgcgtcgc ccgcaataaa
    10081 gatatgcgga atgctggtct gcatggtcag cgggtcggca acgggtacgc cgcgcgcatc
    10141 tttttcgata ttgatatttt ccaaaccgat attgtcaacg ttcggacggc ggcccacggc
    10201 tgccagcata tattcggcaa caaatacgcc tttttcgccg tcctgctccc aatggacttc
    10261 tacattgccg tctgcatcga gcttgacctc ggttttagca tccaaatgca gtttcaattc
    10321 ttcgccgaac acggctttcg cctcgtctga aacgacgggg tcggaaatgc cgccgatgat
    10381 tccgcccaaa ccgaaaattt caactttcac gcccaaacgg tgcaatgcct gacccagttc
    10441 caaaccgata acacccggcc cgaacacggc aacgcgctta ggcagcgtat cccatgagaa
    10501 aacgtcatcg ttgataatca aacgattgcc caaagactgc cattgcggca ggatgacggg
    10561 acgcgaaccg gtagcaatca cgaaactttt tgccgtaatt tgagtatgct cgtcgatttg
    10621 gacggtatgc tcgtcgataa atttagccga acccataatg cgcttgtcgg caggccactc
    10681 ttccacatcg gcaacgacaa agccgacaaa acggtcacgc tcggatttaa cgcgctgcat
    10741 gacctcttca ccgttgacga cgatgctgtc tttgtccaaa tgcacgccga acgggtcggt
    10801 atgcaatgcg tggtggcgcg cttctgcggc ggcaatcaag agtttggaag gcatacaacc
    10861 cacgcgcgcg caggttgtgc cgaacacatt gttttcaatc aggtaaacat tatccgaatg
    10921 taaacgggca ttgcgaaacg cacccatacc ggcagtaccg ccgccgatta cgacgacatc
    10981 cgcttgaatt tttttcataa tctttgtcct tccgttttcg tctgaaacat tgccgacaca
    11041 gaacatatcg gtttcagacg gcatttaaat attttcccaa tcaaaaacat cattcagata
    11101 aataaaaaca aaatttcgat tgagtgcaac aatatccaaa ttctcttata aatatagagt
    11161 tattcggatc ggcagtgtag aaccgcccga ataactctat ccggtatatc agacagttta
    11221 atcaaaccgc cttaagcaaa cagctatcag tttttagcca agtaagcttc caaatcttcg
    11281 ctgccgccga tgtatttacc gccgatgaag acttgaggag cagtcatctt gccggtaatg
    11341 gcgcgaacgg aagtaacggt tgcatctttg cccaatacga tttcttcgta agacaaacct
    11401 ttgtcttgca aagcttgttt ggctttggcg cagaattggc agccgggttt ggtaaagatg
    11461 gcaacagact cttgagcctt ccaatcggga gcaacgaatt gcagcatagt atctgcatcg
    11521 gatactttga aaggatcgcc cggttcttca ggttcgatga acattttttc aaccacgccg
    11581 tcgttaacca gcatggagta acgccaagag cgtttaccga agcccaagtc ttctttaccg
    11641 accagcatac ccataccttc ggtaaattcg ccgttgccgt caggaatcat gtagatgttg
    11701 tcggattctt cttcggcagc ccaagcgttc attacgaacg tatcgtttac agatacgcag
    11761 tagattgcgt caacgccgtt ttctttgaac gcgccgaaca attcgttgta acgcggcagg
    11821 tgtgaagaag aacaagtcgg ggtaaatgca ccgggcaggg agaatacgac tacttttttg
    11881 cctttgaaca aatcatcggt agacacatct ttccaagtgt cgccgacgcg ggtgcggaat
    11941 actacggaag gtactttttg accggtacga tcttgcaaag ccattttaag ctccttaata
    12001 gattggtttg agaaataatt gtgaatcgct gggcattcta ccccatgcaa aatgatttgt
    12061 ataatttata gttcaaataa tataaattat ttaaaactat caaacacaac tccgatttgc
    12121 ctgtttccca catataaagc cgaatgagaa aaaaacaagc tgcaatgaaa agattttccg
    12181 gcaactgcgc ccttgcgccg caaatcagga caaaataccg tctgaaaggc tttcagacgg
    12241 tatttattca tacggtctcg gcttatttcg ccaattcggc acgcagtttt cgggttacgt
    12301 tcatcatcac ttggagttgt tccagagttt ctttccagcc acgtgttttc aggccgcagt
    12361 caggattcac ccacagacgc tcaaccggta caacctcgat ggctttgcgc aacaggtgct
    12421 caacttcggc ttcagtcggt acgcgcgggc tgtggatgtc gtaaacgccc gggccgatgt
    12481 cgttcgggta tttgaactcg ccgaacgcag tcaagagctc catgtcggaa cgtgaagttt
    12541 cgatggtgat gacatcagca tccatagcgg cgatggcagg caggatgtcg ttgaactcag
    12601 agtagcacat atgagtgtgg atttgggtgc tgtcttcgca accggtagag gacaggcgga
    12661 aagattcgcc ggcccagttc aggtaggcat cccaatcggc acgtttcaaa ggcagacctt
    12721 cacggatggc aggttcgtcg atttggatga ctttgatgcc ggctttttcc agatccaata
    12781 cttcgtcgtt cagagccagt gcgatttgtt tgcacacggt agcgcgagga atgtcgttgc
    12841 ggacgaaaga ccattgcaga atggttacag gaccggtcaa catgcctttc attgggcgtt
    12901 tggtcaggct ttgtgcgtaa gtagaccaag cgacagtcat ggcttcagga cggcttacgt
    12961 caccgaagat aatcggtggt ttaacacaac gtgagccgta gctttgtacc cagccgtatt
    13021 gggtgaatgc aaaaccgctc aacaattcgc cgaagtattc gaccatgtcg ttacgctcgg
    13081 cttcgccgtg taccagtacg tccaagtcca gtttttcttg ctcttcaact accaaggcga
    13141 tttctttttt catcgcggct tcgtaatcgg cagcagacag ttcgcctttt ttgaaggctg
    13201 cacgtgcttg gcggatttcg gtagtttgcg ggaaagaacc gatgttggta gtcggcagca
    13261 gaggcaggtt caaccatgct tgttgcgctt tgatacggtc ggcaaatggg gatttgcgtt
    13321 ggtctgcgtt ggcaggcaaa tcggcaaggc gtttggcaac gtctgcacgg tggatttcgc
    13381 tgctgttggc acgggagtcg gcggcagctt ggctggcggc cagttcttcg gcaacagaat
    13441 cacggccttc gttcaatgcg gctttcagaa cgcgcaattc ttgggttttt tgcagggtga
    13501 atgccaacca agagtacagg tcaggtttgt tggctctcag tttttcttca actgacaagt
    13561 caaatggagt gtgcagcagg gagcaagagc tggaaatcca caaacggtcg cccagtttgg
    13621 cttgcagagg ctcaacagtt tccaaaactt tgtttaggtt ggcgcaccaa atgttgcggc
    13681 cgtcgataac gccggcagac aggactttgt cgtagtcggc gaacgcgtcc agttgctcgg
    13741 gagcgcgtac caagtcgatg tgcagaccgt caacaggcag ggatttcaac aatgcggcgt
    13801 gttcggcaac agaaccgaag taagtgctca acaggatttt ggcacttact ttgctcaaag
    13861 tagcgtaaac gtctttgtac gcttctaccc attctttagg caggtcaaca gccaaagcag
    13921 gctcgtcgat ttgaatccat tctgcaccgg cttcaaccaa agcgtttagg atttcaacgt
    13981 aaacaggcag cagtttttgc aacaggctca ggcggttgaa ttcgactgtg cctttttctt
    14041 tacccaccca caggaaagtc aacggaccta caacggtcgg tttggctttc agaccgaggg
    14101 cttgggcttc ttgcagttgt tgaacatagt gtttggcatt ggctttgaat tcggtatcgg
    14161 cgtggaattc aggcaccaag tagtggtagt tggtgtcgaa ccatttggtc atttcgatag
    14221 cgaattggtc tttgttgccg cgcgccagtt ggaagaattg ttccaaagac aggttttggc
    14281 tgtcgaaacc gaagcgggcg ggaatcgcgc cggtggcgac ttgcaggtcg aggatgtggt
    14341 cgtagaaagt gaaatcgcct acggcaacga aatcggcgtt ggcagcggcc tggtgtttcc
    14401 agtttttctc gcgcaagtct ttagcaacag ccagcaattc ttgctcgctg atttctttgc
    14461 gccagtattt ttcttgtgcg aatttcaatt cgcggaaggc gccgacacgc gggaagcctg
    14521 agaaatgtaa tgttgtcatg ttgaactctc cagttggatt ttgtaaggac cggttcgatc
    14581 cgaatcggtc ggtattgtaa atcagaatgg ctcggatggg gcggcgtttt gcttttcaga
    14641 cggcctcgta tgccgtctga agccgttttc agctttaagg gcgcacgcct aaaatatggc
    14701 agatggcgta agtcagctcg ctgcggttaa gcgtatagaa gtggaaatct ttcacgcctt
    14761 cgcgggacag gactttgacc atatcgatgg cgatacttgc cgccaccaga ttgcgcgtac
    14821 cttggtcgtc gtccaaacct tcatacattt gcgacagcca gcttgggatt ttgacgttgg
    14881 ttacttgagc cattttaccg agctgcttga agttggtaac aggcaaaata ccggggacga
    14941 tttccacatc gatacccaac atcacgcagc ggtcgcggaa gcgcaggtag cgttctacgt
    15001 caaagaaaaa ttgggtgatg acgtggttcg cgcccgcatc gattttgcgt ttcaaattaa
    15061 tcaggtcggc ttgtgcggat ttcgcttcgg gatgcacttc gggatatgct gctacagaga
    15121 tgtcgaagtc ggcgacggag cgtaatagct taaccaagtc ttcggcataa aacggttttt
    15181 tctcgtaacc gggcggctcg tcgccgcgca gggcgacaat gcggcggatg ccgctgtccc
    15241 aatagtcttt ggcgatttgg cgcaattcgt cgggagaagc gtcgatgccg gtcaggtgcg
    15301 gcgcggcttc caagccggtt tcttgcttaa tgcgtttgac gatgccgtgc gtgcggtcgc
    15361 gttcgccgga atttgcgccg taagttacgg atacgaactt gggatgcagg gtttgcagac
    15421 ggtggatgga gtcccacagc atcgtttcca tttgttcgtt tttcggcggg aaaaattcaa
    15481 acgaaacgtt aatgtcgcct ttcaaatcag aaagactgtt atttaacgca ttgatttctt
    15541 ttgcgtaatt catggctgcg taccttttat tatcttttat atgatgtttc aggcaacata
    15601 ataaagttgc gccaaacatg agtcaatttc aaaattttca gatttatcat gaaaatttct
    15661 aatatattac aaaaatagtt aaatttcctt gtacaagcct tctaatttat gataaagttt
    15721 gttatgttat aacaattcaa ctaaggcgat atatgaaacc gaatattcat cctgacaatt
    15781 atcgaaccgt cctttttttc gacagcagcg ccaatgaagg ctggttaatc cgctcctgtg
    15841 ccgaaacaca cggaaaaacg atggtttgga cagacggcaa agaatatccg ctgttttcgc
    15901 tggatacttc ttccgcatcc catcccgtct ataccggcaa gcagcgcaac gtcaacaccg
    15961 aaggccgtgc cagcaaattc aaccaacgtt tccaatccgt catgtcatcg tttagaaagg
    16021 acaaataatg caggttctgt cttcactcaa aaccgccaaa caacgccacc gcgactgcca
    16081 aatcgtcaga cgcaggggca aagtttacgt catctgcaaa agcaatccgc gttttaaagc
    16141 gcgccaacgc tgacccccta ccctttcctg cttcggttgt aaagcccctc ctaccgcaag
    16201 cccttttcaa atatgccgtc tgaaacagaa aaatgcgttt cagacggcat tttttccgtc
    16261 aatacgaatc cggaatgtgt ttgaaataca gcataaacag ataccaaaac agtgtcgcgg
    16321 cagctgcgcc aagcagtacc catgcgctga ttttggcgac atcgcgcagg gcacgttttt
    16381 gcttgcggct gaagaggcgg ttgataatca gcgcggcaag tgcgaaaaag aaaaaaatac
    16441 ggaaaagtct gcctatcata tagggaagcg gtggaggtcg tctgaaaaag tatggatcgg
    16501 ttgcggcggc atggggacgg atgtttcagc gcgtcgggct gcttgtccga ccgtgtcaaa
    16561 aagtcatgcc gtttgcgata taataacgct tttcgccgca tttgttggaa caggatatga
    16621 gtcaaaatgc ctcggtgggc attgtaacgc cccaaaaaat tccgtttgag atgccgctgg
    16681 ttttggaaaa cggtaaaact ttgccgcgtt tcgatctgat gattgaaacc tacggcgagc
    16741 tgaatgccga aaaaaacaat gcggttttaa tctgccatgc gctgtcgggc aaccatcatg
    16801 ttgcgggcag gcattcggcg gaggataaat atacgggctg gtgggacaat atggttggac
    16861 ccggcaaacc gattgatacg gaacgttttt tcgtggttgg cttgaataat ctaggtggct
    16921 gcgacggcag cagcgggccc ttgtcgatca atcctgaaac gggcagggaa tacggcgcgg
    16981 attttccggt ggttacggtg aaggactggg taaaatccca agccgcgctt gccgattatc
    17041 tcggcatcgg gcaatgggcg gcggttgtcg gcggcagttt gggcggtatg caggctttgc
    17101 agtgggcgat ttcctacccc gaacgcgtgc gccacgcctt ggtgattgcg tccgcgccga
    17161 aactgtccac gcaaaatatc gcgtttaatg atgtagcacg tcaggcgatt ttgaccgatc
    17221 ccgatttcaa cgaaggacat taccgcagcc gcaacaccgt tcccgctcgg ggcttgcgga
    17281 ttgcccgcat gatggggcac atcacctatc ttgccgaaga cggtttgggc aaaaaattcg
    17341 gacgcgattt gcgttccaac ggctatcaat acggctatgg cgttgaattt gaagtagaat
    17401 cctatctgcg ctatcaaggc gacaaattcg tcgggcggtt tgatgccaac acctatttgc
    17461 tgatgaccaa ggctttggac tatttcgatc cggcggcgga tttcggcaac agcctgaccc
    17521 gcgccgtgca ggatgttcag gcaaaattct ttgtcgccag cttcagcacc gattggcgtt
    17581 tcgcgcccga acgttcgcac gaactggtca aggccctgat tgccgcccaa aaatccgtgc
    17641 agtatatcga agtcaaatcc gcacacgggc acgatgcctt tttaatggaa gacgaagcct
    17701 atatgcgtgc ggtcgccgcc tatatgaaca acgtttataa ggaatgtcag caatgaacct
    17761 gcgcgatgat ttgcaactga tttacgaccg gatacccgaa ggcagccgcg tcttggactt
    17821 gggctgcggc gacggcgaac tgcttgccgc cttggtcgaa cacaaaaaat gcagcggcta
    17881 cggcatcgaa atcgacaccg acagcgtgat tgccgcgatg tcgcgcggcg tgaatgttat
    17941 ccaagccgat ttggaagaag gtttaaccgc attcaacgat caaagttttg atgtgattgt
    18001 gttgagccag accatccaag cgatgcagaa taccgaaaaa atcctgcgct gcctgatgcg
    18061 cgtggcaaaa caggcaatcg tcagcttccc gaatttcggc tactggcgca accgcgtcca
    18121 aatcgcactc ggcggacata tgccggtttc cgaacgtatg ccctaccatt ggtatgatac
    18181 gccgaacatc cattggtgta cgctcaaaga ctttgatttg ttgtgcgcca aaaacaacat
    18241 acgcgtcctc gagcgcgccg tgatgacggg caacagacag gtcaaacatt tccccaacct
    18301 tttgggcagc cttgcgtttt accgcgtcgg gtaagacaga ttgagaacct tgtcggcaat
    18361 aacaggttct tcggttctat taacaacagg ccgtctgaaa aatgaaacgg taggttttca
    18421 gacggcctct ttaatactgg aaacaataga atgaaaaaca aaacctcatc acttctctta
    18481 tggcttgccg caatgatgct gaccgcgtgt tccccgaaca aagacgatac caaagaagtc
    18541 ggtgcatccg ctgctccgtc ctccgtgtca tcagcttctt cccaatccga tttgcaaccg
    18601 gccgcatccg cccctgataa cgtcaagcag gcagaaagcg cgccgccgtc aaattgcacc
    18661 agcctgcacc ccgctaccgg cattgacgat ctcatgcagc aaatcgccga acacatcgac
    18721 tcggactgtc tgtttgccct ttcccatcac gaactggaaa cccgtttcgg cttacccggc
    18781 ggaggctatg acaacataca gcggctgctg tttcccgaca tccgccctga agatcccgac
    18841 taccatcaga aaatcatact ggcaattgaa gacttgcgtt acggaaagcg cacgatcagc
    18901 cggcaggcac aagatgcctt gatggaacag gaacgccgcc tccgagaagc gacgctgttg
    18961 ctgatacagg gcagtcaaga aacccgcgga caaggcgagg agccgaaacg cgcacgttat
    19021 tttgaagttt cggcaacatc tgcctatttg agccgacaca acaacggact cggcggcaat
    19081 ttccaataca tcagccaatt gcccggctat ctgaaaatac acggagaaat gcttgaaaac
    19141 caatcactct tccggctgtc caaccgtgaa cgcaatcccg acaaaccgtt tttagacatc
    19201 cattttgacg aaaatggcaa aatcacgcgt attgtcgttt acgaaaaaaa catctacttc
    19261 aatccaaact tggggcgaag ataaaaaaat gccgtctgaa acgttttcag acggcatttt
    19321 tcaatgcggc aaatcaggcg cgtttgcgga attcgccggt gcgggtgtcg atttcgattt
    19381 tgtcgccgtt ttcgatgtaa gacatcactt ggatttcggt gccgccgacc aggcgcgcgg
    19441 ttttcatcac tttgccggaa gtgtcgcctt tgacggcagg ctcggtgtac tcaacttcgc
    19501 gtacgatgat ggtgggcagc tcgacagaaa tagggttgcc ttcatagaag gtaacttcgc
    19561 attggtcttc cataccgtca acgatgaatt tcaacgcgtc gccgatgttg tcggcttcga
    19621 tttcgtattg gttgaattct tcgtccataa agacgtacat cgggtcggca aagtagctgt
    19681 acgtacagtt tttgcgggac aggatgacca cgtcgaattt gtcgtcggct ttgtaaatgg
    19741 tttcggaagc cgctccggtc aacaggtttt tcagtttcat gctgactttg gcggaagagc
    19801 ggccgccttt gatgtattcg gttttttgaa cgaccatagg atcgttgccg accataaata
    19861 cattgccggc gcgcagttct tgtgctgttt tcattgtgat tttccaatca aatcggttgt
    19921 cgtaaaacgc gctattctag cgtatttttt gatgctttga aacaaaggcg gcgagttttt
    19981 cggatgcgga aggctgccca aaaagataac ggctccactc ctctgcgcct tgccgccagc
    20041 cgttttggtg ttgttgcagg gtttgccaac attcgaggcg ttgtgttgcg gataaagcct
    20101 ctccgccgtt gaggtcgtcc gaaaggcggc ggtgtgccga tgcggtttcg ggcgagtaaa
    20161 atccatgcgc cttatcccaa aaggcgtgga gtttatcgag atggacattc tcgtcttgcg
    20221 ggtagatgtg ccaaaagaag ggtttgcccg caagctgggc gcgcacgaaa ctgtcttcgc
    20281 cgcggatgac ggcgcagtcg gcaaggtgca gcagttggtc gaagtcctgt tgcggcacga
    20341 aagggatttt gacgaggcgg acggatgccg tctgaaaaac atcgccgtcg ttttgcaggg
    20401 catcttgcgg aataacgccg ctttgtttga ggctgtcgat gatttgcgtc cccgccagca
    20461 acagtgtcat cgggctgcct gcctgtcgcc acatttccag ccactttgcc caaacatcgc
    20521 tccgatagcc gaaaagcagc cattcggggg cgtttttttc gggaagcatc agcctcttgc
    20581 gcaaggctcc gctatcgaaa cggacggctt cgcagtaatc acgttcgcgt atcaacccgc
    20641 cgcttttttc gctgaaaccc ataaaccaaa aatatttttg aacaccctcc tgcggcgaag
    20701 gcatcagatg cagcctttca ttgctttcct ccgcgctcaa atattcccaa ttcagccaaa
    20761 gcggcttgtg tcggcggata atgtgcagca cattttcggg caggtcgcag gcaaaagttt
    20821 cgatgacgac atcgggaaca ggcgcggtat caatatctgc cgcatcggaa tgccaagtgc
    20881 ggacatgaat atcctgatga acgcagggaa catcgggcaa atcagggcaa agcgcacgca
    20941 aggcggacac atcgtccgtc cacaaatgca cctgccaacc gagttcgcgg tgcaaaacac
    21001 gggcgagccg ccacgaaacg ccgatgtcgc cgaaattgtc gatgaccttg caaaaaatcc
    21061 aacagacaaa aggaggagta ttcatagaaa taacggaaac aagctaaaac gcgccgaaat
    21121 agtggaacaa atacacaacc agcaaaacaa tcggaataaa cagcaacatg gtttgacgtt
    21181 tcaaatcaaa ctcttgtttc aaatgatgct tgatggtgtc gaaaaggacg aatttgaaca
    21241 aaaacgtcgc ttcgcaggca aggatgatgc cgttgatcag atgctggggt ttgtcttcgg
    21301 gcggattggc gacgaaaacg gcaagcgtcg ccaaagggat gaggcagacg acaagccagc
    21361 ggacaagcag gtttcgggac attgcaaggc tttcaaaaaa gcaaaacgcc attatcgccc
    21421 caagcgcacg ccttgtctaa cggacgcgcc ggcgatgccg tctgaagcct tgccgcagga
    21481 aaacaccgca ccgccgaacc tttaaatacg cccgagacgg gcgttccccg aaaaatcgga
    21541 cgctgccgcc gatgcctgcg gacaaggctg catcgggcgc gggcatattg aaaacccggc
    21601 gcgtcggt
//
LOCUS       DAWGNT010000018        21566 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.018, whole genome shotgun sequence.
ACCESSION   DAWGNT010000018 DAWGNT010000000
VERSION     DAWGNT010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21566
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.018"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            33..584
                     /locus_tag="WHR98_000461"
     CDS             33..584
                     /locus_tag="WHR98_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307191.1"
                     /translation="MKVLNGWSDRKMWRVLSALPIGVVFFDLIYGFVLNVLQGLDLQR
                     AVPDSEGVLAVTPDIAFNSLQIVANGGMAAVVCFGLAVVFLLNRSVRRRQVLEIGVFR
                     MLGLVAVLAFSAPSVWEWANALPLLLKGADVVNTGNARYVLTALCMPFPAVSCVIGLV
                     GRFRLQTASGRAAKAGGAVKAGG"
     gene            complement(850..1541)
                     /locus_tag="WHR98_000462"
                     /pseudo
     CDS             complement(850..1541)
                     /locus_tag="WHR98_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255623.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
     gene            complement(1872..2588)
                     /locus_tag="WHR98_000463"
                     /pseudo
     CDS             complement(1872..2588)
                     /locus_tag="WHR98_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742706.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2715..2873)
                     /locus_tag="WHR98_000464"
     CDS             complement(2715..2873)
                     /locus_tag="WHR98_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307192.1"
                     /translation="MKTPLPICTLSALAACTLSGQGGTQVYGEIKARDLCVTAPILLS
                     AFCLACSR"
     gene            complement(2870..3712)
                     /locus_tag="WHR98_000465"
     CDS             complement(2870..3712)
                     /locus_tag="WHR98_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEZ2307193.1"
                     /translation="MLVCNPYEVVIHGTTSSGKIFRPSDWAERLCGILSSFTKDNRLS
                     YSKWVRPMLVDNIRCVAVDKKLETDNPQMFRFLMDFAADNDLRVIDCKALLEEREQGG
                     QNGPADERVLLAQAIEEKHAAEKAQEQTASGASYVLREIGADDTATAFAALSVLRSAL
                     TDINRFTEQINKIQRPQGYRLLGIFEEGKHNAVAVCGFHEACTLAGGRHIHIDDIVTL
                     PQSRRKGYASRLLEEVRKIGAETGVTKIHLNVHVNHDRADAHRLYFKNGFEICAYHFR
                     CDPK"
     gene            3950..4870
                     /gene="pyrB"
                     /locus_tag="WHR98_000466"
     CDS             3950..4870
                     /gene="pyrB"
                     /locus_tag="WHR98_000466"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HEZ2307194.1"
                     /translation="MPNPLYRQHIISISDLSREQLECLLQTALKLKAHPRGDLLEGKL
                     IGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAI
                     IQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAG
                     DLKYGRTVHSLCQALKRWGCEFAFVSPPSLAMPDYITEELDEAGCRYRILGSLEEAAE
                     WADILYMTRVQRERFDEQEFAKIQGKFNLDASMLARAKPNLRVLHPLPRVDEIHPDVD
                     ATPHAYYFEQATNGVYARMAILSLVLNEEV"
     gene            4880..5338
                     /locus_tag="WHR98_000467"
     CDS             4880..5338
                     /locus_tag="WHR98_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HEZ2307195.1"
                     /translation="METPKLSVEAIEKGTVIDHIPAGRGLTILRQFKLLHYGNAVTVG
                     FNLPSKTQGSKDIIKIKGVCLDDKAADRLALFAPEAVVNTIDNFKVVQKRHLNLPDEI
                     AEVFRCPNTNCAGHGEPVKSRFYVKKHNGQTRLKCHYCEKTYSRDSVAEA"
     gene            5403..6068
                     /locus_tag="WHR98_000468"
     CDS             5403..6068
                     /locus_tag="WHR98_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307196.1"
                     /translation="MMMHASVQSRFAPILYVLIFFAGFLTAQIWFNQKAYTEELPPLL
                     SALSAVALVWLAWAFVSARSKAKAEKFFREKMIQNESIHPVLHASLQHLEHKPQMLAL
                     LVKNHGKGMAEQVRFKAEVLPDDEDARTIAAELAKMDMFALGTDAVASGETYGRVFAD
                     IFELSAALEGRAFKGMLKLTAEYKNIFGDACRSETALDLGALNQALQEISKTSEKSKR
                     IFY"
     gene            complement(6131..7348)
                     /locus_tag="WHR98_000469"
     CDS             complement(6131..7348)
                     /locus_tag="WHR98_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEZ2307197.1"
                     /translation="MQRRIITLLCAAGMAFSTQTLAANLEVRPNAPERYTVKQGDTLW
                     GISGKYLYSPWQWSRLWDANRDQIHNPDLIYPDQVLVLRHVDGEPRLGLEQTDGIPVV
                     KMSPDKEVSGYGIPAIDVNFYRIFMRHPQIVSRKETAAAPRLLSGPEGRLLYTKGTRV
                     YTKGLKEPGRYLTYRINKNITDPDTGKFLGQEVAFSGIVRSLDYTDSVLEQRSKQAGE
                     RPKDNEYHTRTHPLITPLRTPSIQPLVVETAISEIQQGDYLMKMPEDTDRFNMMPHEP
                     SRPVQAKIVSVFEGTRIAGQFQTITIDKGEADGLDKGTVLSLYKRKKTMQVDLSNNFK
                     SRDTVELISTPAEEVGLAMVYRTSEHLSSAIILENISDISVGDTAANPGRDLDNIPDQ
                     GRSRVKFGFNRSE"
     gene            7490..8035
                     /gene="def"
                     /locus_tag="WHR98_000470"
     CDS             7490..8035
                     /gene="def"
                     /locus_tag="WHR98_000470"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEZ2307198.1"
                     /translation="MKNRRRIRRRKEKIMALLNILQYPDERLHTVAKPVEQVDERIRK
                     LIADMFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPRVFINPVIVEKDGETTYE
                     EGCLSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVER
                     LSQLKQGRIKTKLKKRQKHTI"
     gene            8122..9048
                     /locus_tag="WHR98_000471"
     CDS             8122..9048
                     /locus_tag="WHR98_000471"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEZ2307199.1"
                     /translation="MKVIFAGTPDFAAAALKAVAAAGFEIPLVLTQPDRPKGRGMQLT
                     ASPVKQAALELGLRVAQPEKLRNNAEALQMLKEVEADVMVVAAYGLILPQEVLDTPKH
                     GCLNIHASLLPRWRGAAPIQRAIEAGDAETGVCIMQMDIGLDTGDVVSEHRYAIRPTD
                     TANEVHDALMEIGAAAVVADLQQLQSKGRLNAVKQPEEGVTYAQKLSKEEARIDWSKS
                     AAVIERKIRAFNPVPAAWVEYQGKPMKIRRAEVVAQQGAAGEVLSCSADGLVVACGEN
                     ALKITELQPAGGRRMNIAAFAAGRHIEAGTKL"
     gene            9127..10386
                     /gene="rsmB"
                     /locus_tag="WHR98_000472"
     CDS             9127..10386
                     /gene="rsmB"
                     /locus_tag="WHR98_000472"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HEZ2307200.1"
                     /translation="MSMALAQKLAADSIAAVAEGRNLQDVLVHIRAAHPDLTAQENGA
                     LQDIAYGCQRYLGSLKHMLAQMLKKPIGNPQLESLLLAALYQLHYTRNAPHAVVNEAV
                     ESIAKIGRGQYRSFANAVLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKH
                     WHNITAALQSHPPMTLRVNRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRL
                     PGFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCRVTALDID
                     AGRLKRVEDNIARLGFQTASAACADARDLAAWYDGKPFDTILADVPCTASGVARRNPD
                     VKWLRRPTDALKTARQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHA
                     DAEPIESRVLLPNKHQDGFYYALIQKH"
     gene            10352..10951
                     /locus_tag="WHR98_000473"
     CDS             10352..10951
                     /locus_tag="WHR98_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4390 domain-containing protein"
                     /protein_id="HEZ2307201.1"
                     /translation="MAFITRLFKSIKQWLVLLPMLSVLPDAAAEGIDVSRAEARITDG
                     GQLSISSRFQTELPDQLQQALRRGVPLNFTLSWQLSAPIIASYRFKLGQLIGDDDNID
                     YKLSFHPLTNRYRVTVGAFSTDYDTLDAALRATGAVANWKVLNKGALSGAEAGETKAE
                     IRLTLSTSKLPKPFQINALTSQNWHLDSGWKPLNIIGNK"
     gene            10951..13071
                     /locus_tag="WHR98_000474"
     CDS             10951..13071
                     /locus_tag="WHR98_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HEZ2307202.1"
                     /translation="MRRFLPIAAICAVVLLYGLTAATGSTSSLADYFWWIVAFSAMLL
                     LVLSAVLARYVILLLKDRRDGVFGSQIAKRLSGMFTLVAVLPGVFLFGVSAQFINGTI
                     NSWFGNDTHEALERSLNLSKSALNLAADNALGNAVPVQIDLIGAASLPGDMGRVLEHY
                     AGSGFAQLALYNAASGKIEKSINPHKLDQPFPGKARWEKIQRAGSVRDLESIGGVLYA
                     QGWLSAGTHNGRDYALFFRQPVPKGVAEDAVLIEKARAKYAELSYSKKGLQTFFLATL
                     LIASLLSIFLALVMALYFARRFVEPVLSLAEGAKAVAQGDFSQTRPVLRNDEFGRLTK
                     LFNHMTEQLSIAKEADERNRRREEAARHYLECVLEGLTTGVVVFDEQGCLKTFNKAAE
                     QILGMPLTPLWGSSRHGWHGVSAQQSLLAEVFAAIGAAAGTDKPVHVKYAAPDDAKIL
                     LGKATVLPEDNGNGVVMVIDDITVLIHAQKEAAWGEVAKRLAHEIRNPLTPIQLSAER
                     LAWKLGGKLDEQDAQILTRSTDTIVKQVAALKEMVEAFRNYARSPSLKLENQDLNALI
                     GDVLALYEAGPCRFAAELAGEPLMVAADTTAMRQVLHNIFKNAAEAAEEADVPEVRVK
                     SEVGRDGRIVLTVCDNGKGFGREMLHNAFEPYVTDKPAGTGLGLPVVKKIIEEHGGRI
                     SLSNQDAGGACVRIILPKTVKTYA"
     gene            13064..14341
                     /locus_tag="WHR98_000475"
     CDS             13064..14341
                     /locus_tag="WHR98_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HEZ2307203.1"
                     /translation="MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRH
                     QARPAMVLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGALDF
                     LEKPISLQKLLSAVENALKYGAAQTETGPVFDKLGNSAAIQEMNREVEAAAKRTSPVF
                     LTGEVGSPFETVARYFHKNGTPWVSPARVEYLIDMPTELLQKAEGGVLYVGDIAQYSR
                     NIQTGIAFIIGKAERCRVRVVASGSRAAGSDGIACEEKLAELLSESVVRIPPLRMQHE
                     DIPFLIQGIACNVAESQKIAPASFSEEALAALTRYDWPGNFDQLQSVVATLLLEADGQ
                     EIGAGAVSSLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSK
                     VAQKVGLERTHLYRKLKQLGIGVSRRAGEKTEE"
     gene            14432..15619
                     /gene="dprA"
                     /locus_tag="WHR98_000476"
     CDS             14432..15619
                     /gene="dprA"
                     /locus_tag="WHR98_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEZ2307204.1"
                     /translation="MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSAPAEQV
                     APAVRHKQAAEAWRNAEKRASARQAAEAALEWEMRDGCRLMLLQDEDFPEMLTQGLTA
                     PPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRTLSGKGIPVVSGMASGIDT
                     AAHQGALEAEGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPIGTRPYAGNFP
                     RRNRLIAALSQVTLVVEAALESGSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIK
                     DGAKLVECLDDILNECPGLLQNTGASSYSINKDTPDTGSRAVQTAYAPPPAAKMPSEG
                     AAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQR
                     IRT"
     gene            15645..16106
                     /locus_tag="WHR98_000477"
     CDS             15645..16106
                     /locus_tag="WHR98_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 family protein"
                     /protein_id="HEZ2307205.1"
                     /translation="MTEVIAYLIEHFQDFDTCPPPEDLGMLLEEAGFDTMEIGNTLMM
                     MEVLLNSSEFSAEPADSGALRVYSKEETDNLPQEVMGLMQYLIEEKAVSCEQREIIIH
                     ALMHIPGDEITVDTAKVLTLLLLWANKSELPVLVGDELMSALLLDNKPTMN"
     gene            16178..18484
                     /gene="topA"
                     /locus_tag="WHR98_000478"
     CDS             16178..18484
                     /gene="topA"
                     /locus_tag="WHR98_000478"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEZ2307206.1"
                     /translation="MAKNLLIVESPSKAKTLKKYLGGDFEILASYGHVRDLVPKSGAV
                     DPDNGFAMKYQLISRNSKHVDAIVAGAKEAENIYLATDPDREGEAISWHLLEILKSKR
                     GLKNIKPQRVVFHEITKNAVLDAVANPREIEMDLVDAQQARRALDYLVGFNLSPLLWK
                     KIRRGLSAGRVQSPALRLICERENEIRAFEAQEYWTVHLDSHKGRSKFTAKLAQYNGA
                     KLEQFDLPNEAAQADVLKELEGKEAVVTAIEKKKRSRNPAAPFTTSTMQQDAVRKLGF
                     TTDRTMRTAQQLYEGIDVGQGAIGLITYMRTDSVNLADEALTEIRHYIENKIGKEYLP
                     SAAKQYKTKSKNAQEAHEAIRPTSVYRTPESVKPFLSADQFKLYQMIWQRTVACQMTP
                     AKFDQTTVDITVGKGVFRVTGQVQTFAGFLSVYEESSDDEEGEDSKKLPEMSEGDKLP
                     VDKLYGEQHFTTPPPRYNEATLVKALEEYGIGRPSTYASIISTLKDREYVTLEQKRFM
                     PTDTGDIVNKFLTEHFAQYVDYHFTAKLEDQLDEIADGKRQWIPLMDKFWKPFIKQVE
                     EKEGIERAKFTTQELDETCPKCGEHKLQIKFGKMGRFVACAGYPECSYTRNVNETAEE
                     AAERIAKAEAEQAELDGRECPKCGGRLVYKYSRTGSKFIGCANYPKCKHVEPLEKPKD
                     TGVQCPQCKKGNLVERKSRYGKLFYSCSTYPDCNYATWNPPVAESCPKCAWPVLTIKT
                     TKRWGVEKVCPQKECGWKEQIEPPAPKE"
     gene            complement(18557..19252)
                     /locus_tag="WHR98_000479"
     CDS             complement(18557..19252)
                     /locus_tag="WHR98_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307207.1"
                     /translation="MMKDLNLSNSLFKGYNDKHGLIICGYEWGWSKADEAAYVAGEYK
                     LPENKIDHTFANKSLYFGEQAKKWRYDNTIKNWFEMWGHPLDENGLGGAFEKSLVQTN
                     WAATQGNTIDNPDKFTQPEHIDNFLYHIEKLRPKVILFMGSRLADFLNNQNVLPRFEQ
                     LVGKQTKPLETVQKEFDGTRFNVKFQSFEDCEVVCFPHPSASRGLSYDYIALFVPEMN
                     RILSDFKTTRGFK"
     gene            complement(19272..19625)
                     /locus_tag="WHR98_000480"
     CDS             complement(19272..19625)
                     /locus_tag="WHR98_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307208.1"
                     /translation="MEFLSLYPWWSFFIILTIILSYIGFCAHLHIQNIVWGKLLLSTI
                     VWAILAISFGLASIMGNSKRKKYERRDRHTERNEKAFIGTLLVGFGLSINLLNLCCLH
                     KDFSTPSKNIEVNRS"
     gene            19743..20120
                     /locus_tag="WHR98_000481"
     CDS             19743..20120
                     /locus_tag="WHR98_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEZ2307209.1"
                     /translation="METHEKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNI
                     PRLEQLAQIFKIDMWDLLKSGGGGMVFQINEGDSGGDIALYASGDVSMKIEFLKMELK
                     HCKEMLEQKDKEIELLRKLTETV"
     gene            20209..20778
                     /gene="rsmD"
                     /locus_tag="WHR98_000482"
     CDS             20209..20778
                     /gene="rsmD"
                     /locus_tag="WHR98_000482"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEZ2307210.1"
                     /translation="MAAGKHTKHSNRVRIIGGQCRGRKLSFTSADGLRPTPDSVRETL
                     FNWLGQDLTGKTVLDLFGGSGALGIEAASRNAKRVLISDNNRQTVQTLQKNSRELGLG
                     QVQIVFSDGIAYLKTVSEQFDVVFLDPPFAWQDWQILFDALKPCLNPRAFVYLEAGTL
                     PNIPDWLTEYREGKSGQSTFELRVFQVAE"
     gene            20901..21152
                     /locus_tag="WHR98_000483"
     CDS             20901..21152
                     /locus_tag="WHR98_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEZ2307211.1"
                     /translation="MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGH
                     YDEPQCQQVCPVDCILIDEEHPETHDELMAKYEKIIQFK"
     gene            21249..21332
                     /locus_tag="WHR98_000484"
     tRNA            21249..21332
                     /locus_tag="WHR98_000484"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21283..21285,aa:Tyr,seq:gta)
     gene            21363..21436
                     /locus_tag="WHR98_000485"
     tRNA            21363..21436
                     /locus_tag="WHR98_000485"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21395..21397,aa:Gly,seq:tcc)
     gene            21446..21520
                     /locus_tag="WHR98_000486"
     tRNA            21446..21520
                     /locus_tag="WHR98_000486"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21478..21480,aa:Thr,seq:ggt)
BASE COUNT         5303 a         5439 c         5974 g         4850 t
ORIGIN      
        1 tttttgttcg gcggcttgcg tggtcgggta aaatgaaggt tttgaacggt tggtcggaca
       61 ggaagatgtg gcgggttttg agtgctttgc cgataggcgt ggtgtttttt gatttgatct
      121 acggttttgt gttgaatgtg ttgcagggtt tggatttgca gcgtgccgtg ccggattcgg
      181 aaggcgtgtt ggcggttacg cccgatattg cattcaacag tttgcagatt gtcgccaacg
      241 gcggtatggc ggcggtggtc tgtttcgggt tggcggttgt gtttttgctc aaccgttcgg
      301 tgcggcggcg gcaggtgttg gaaatcgggg tgttccggat gttggggctg gtggcggtat
      361 tggcgttcag cgcgccgtcg gtgtgggagt gggcgaacgc gctgccgctg ctgctgaagg
      421 gcgcggacgt ggtcaatacg gggaatgcgc gttatgtgct gacggctttg tgtatgccct
      481 ttccggcggt gtcgtgcgtc atcgggctgg tggggcggtt caggcttcag acggcatcgg
      541 gcagggcggc aaaggcaggg ggtgcggtca aggcgggcgg atagggcgca tttttcagcg
      601 ggtgcgtcga gaagcagccg atgtgtttgg cagccgcagc ttgggggggt gtagtgctaa
      661 tggcggtttc tttgctttta tagtggatta acaaaaacca gtacggcgtt gcctcgcctt
      721 agctcaaaga gaacgattct ctaaggtgct gaagcactaa gtgaatgggt ttcgtactat
      781 ttgtactgtc tgcggcttcg tcgccttgtc ctgattacta tataaaataa atgggcaaaa
      841 atcggtttat tatcgttttt gccgcatttg gatttgttct accgtaaaac gtgtttgacg
      901 aacgggattc ttattaaaaa acatctgatt tctaacaaaa tcagtatttt ttggcacgat
      961 ggctaaaatt tttccttcca tttcgccatc acgtgttttc catgcgctca agaattgtga
     1021 tttgctcatt gagacgtgcc ccagcgatgg atcagccagc aaaacagttt ctccgttaat
     1081 accgttcaat accgaaaaat ggttgttttt acggtatttt aaatacacaa ttacaggaat
     1141 ttttagttgt accaactgtt caaatggcaa agcataacct tgtgcttcaa aacccagttc
     1201 gggcattatg cgttgcatat catcaaaaga agcacgcatt tgggttttat ccattttgtc
     1261 caagatttcc gcttcagaat aatgtctgcc ataaaaatta ttcagtaacg tggcaatcga
     1321 agccgcgccg caagaaaaat ccaaatcttg ttttactatg ccggaatctc gccgtgcttt
     1381 ccaacttcgt acatggatgt tttggtaaga agcggggggt caacaaacat aggccaagca
     1441 aaaactatat ttggggcgaa accaatcaaa gccgcataat ttatcaattt ataaagattt
     1501 tttatcataa tatgtatacg cggaataaac gcatgaaaca taaaaaaata aaatcatatg
     1561 caattttatt gcatgaataa atatgaataa aatagataat gatgggagta aatacgccat
     1621 gtattttgga agtttaaatt tattaataat aaaataattt atcgtagcgc aaataaatcc
     1681 caaaattgga acgattagaa aaaaaattaa tacacccatc atcatgcaaa ctctatatta
     1741 ataaatagct aactaatgct attgcagaaa ttagttagct gattaaaagt gattaacaat
     1801 tatagtggat taacaaaaac cagtacggca aggcgaggca acgccgtact ggtttttgtt
     1861 aatccactat atttccgaga attgactgca ttgttggcag cattggcacc aaaacctagt
     1921 gcatgaatac ccggtctcca tgccaaattc ccagccaatc cgcctccggc agcagcagcc
     1981 agccctgttg ccgctactcc tgttgccgca ccgattcctg ccgcagtagc cgcgccttgc
     2041 gcagttccta atttaccatg attatacaaa ttagcaccat gataccccca tgcacctaat
     2101 gcaccgccaa aagcagcggc tgcaataatg ggaacaaatt caccttgtgt ttctttcatt
     2161 tcagcctgtg ataattgaat tgctttcaca ttttggctgt caaaaacttg gctgtctaaa
     2221 ttttgcgcca ttacaggtgt aatcatcata gccattacag ttgcaatttt cgttgcgctg
     2281 gtttgcacat aaataggatt agcaaattcg ctttgattgc gttcagtgtt gatgtagcta
     2341 atactgcttt ctagtttgaa tttacccttg tcagtcaata attcttccaa acttaaaggt
     2401 aagtcagcat aagcaatttg gctggcaaca gtcaaaataa aatctattag acatttgtgt
     2461 ttttgcatca tttcgtttga ttttctagtt tttgagaatg atacaaagtt ttttacaaag
     2521 taaaaagtca ctctgaaaaa cattttttca ttataaatca aaatattgat agaataaata
     2581 gcgagcatcg attcacggtg tactttagtg caaagcgtac aacgcgagcc tgaaccacca
     2641 gccgcaacag gaaaagaaag ccgatagagt gcaatgcttg ccaacgtgca agcgagcttg
     2701 caagaacgct tggctcaacg agagcaggca agacagaaag cagaaagcag gataggagcg
     2761 gtaacgcaaa ggtctcgggc tttgatttcg ccgtaaacct gagtgccgcc ttgtccggaa
     2821 agggtgcagg cggcgagtgc cgacagggtg cagatgggga ggggggtttt catttggggt
     2881 cgcaacggaa gtggtatgcg cagatttcaa aaccgttttt gaaatacagg cggtgcgcgt
     2941 cggcacggtc gtggttgacg tggacgttga ggtggatttt ggttacccct gtttccgcgc
     3001 cgattttgcg gacttcttcc aaaaggcgcg aggcgtagcc tttgcggcgg ctttgcggca
     3061 gggtaacgat gtcgtcgatg tggatgtggc ggccgccggc gagggtgcag gcttcgtgga
     3121 agccgcagac ggcgacggcg ttgtgtttgc cttcttcaaa aatacccagc aggcggtagc
     3181 cttgggggcg ttggattttg ttgatttgtt cggtaaagcg gttgatgtcg gtcagggcgg
     3241 aacgcaaaac gctcaaggct gcaaaggcgg tggcggtgtc gtccgcgccg atttcgcgca
     3301 aaacgtagga tgcgcccgag gcggtctgtt cctgtgcttt ttcggcggcg tgtttttctt
     3361 cgattgcctg tgccagcagg acgcgttcgt cggcggggcc gttttgtccg ccctgttcgc
     3421 gttcttcgag cagggctttg cagtcgatga cgcgcaggtc gttgtcggcg gcaaagtcca
     3481 tcaggaagcg gaacatttgg ggattgtcgg tttccagttt tttatcgacg gcgacgcagc
     3541 ggatgttgtc caccagcatg gggcgcaccc atttcgagta ggagaggcgg ttgtctttgg
     3601 tgaacgagga caggatgccg cacaggcgtt ccgcccagtc gctgggacgg aaaatcttgc
     3661 cggaactcgt tgtgccgtgg atgacgactt cgtaggggtt gcagactaac atggcggctt
     3721 cctgaaaaga aatgtctggc gcgattatac cttatgctta tgcgggcgtg tttggatatg
     3781 ccgtctgaaa agtacgggat tcgtgcggta aaactttgcg gcggcaaatg tgcgataata
     3841 cgcgccgtat tgccgctttt gcgaagctgt tccgcaaaca tacgggcggc gtggacgacg
     3901 tataaccgga tacccgcctg acgcgggttt tttacggaag ggggcaaaaa tgcctaatcc
     3961 gctttacaga cagcacatca tctcgatttc ggatttgtcg cgcgaacagt tggaatgcct
     4021 gcttcagacg gcattgaagc tgaaggcgca tccgcgcggc gatttgttgg aaggcaaact
     4081 tatcggttcg tgcttctttg aaccgtccac gcgcacgagg ctgtcgtttg aaacggcggt
     4141 gcagcggctg ggcggcaagg tcatcggctt ttcggacggc gcgaatacca gtgccaaaaa
     4201 aggcgagacg cttgccgata ccgcccgcat catttccggc tacaccgacg caatcatcca
     4261 acgccacccc aaagacggcg cggcgcgcgt ggcagcggag ttttcgcgcg tccccgtcat
     4321 caacgccggc gacggcacca accagcaccc cagccagacc ttgttggatc tggtaacgat
     4381 ttatgaaacg caggggcgtt tggacaagct caaaatcgcc atggcgggcg acttgaaata
     4441 cgggcgcacc gtgcattcgc tttgtcaggc gttgaaacgc tggggctgcg aatttgcctt
     4501 tgtttcgccg cccagcctcg cgatgcccga ctacattacc gaagagttgg acgaagccgg
     4561 ctgccgatac cgtatcctcg gcagtttgga agaggcggcg gaatgggcgg acatcctgta
     4621 tatgacccgc gtccagcgcg aacgtttcga tgaacaggaa tttgccaaaa tccaaggcaa
     4681 attcaatctc gacgcatcca tgcttgcccg cgccaaaccg aacctgcgcg tgctgcaccc
     4741 tttgccgcgc gtggacgaaa tccatcccga tgtcgatgct acgccgcatg cctattattt
     4801 cgagcaggcg accaacggcg tttatgcgcg tatggcgata ttgtcgctgg tgttgaacga
     4861 agaagtgtga ggaaccgata tggaaacccc gaaactcagt gtcgaagcca ttgaaaaagg
     4921 tacggttatc gaccatattc ccgccggcag ggggctgacc atcctgcgcc agttcaaact
     4981 tttgcactac ggcaacgcgg taaccgtggg cttcaacctg cccagcaaaa cccaaggcag
     5041 caaagacatc atcaaaatca aaggcgtgtg cttggacgac aaagccgccg accgcctcgc
     5101 cctgttcgcc cccgaagcgg tggtcaatac catcgacaat ttcaaggtcg tgcagaagcg
     5161 gcatttgaac ctgcccgatg aaattgccga agtgttccgt tgcccgaaca cgaattgcgc
     5221 cggccacggc gagccggtca aaagccggtt ttatgttaaa aaacacaacg ggcagacgcg
     5281 gctgaaatgc cattactgcg aaaaaaccta cagccgggat tcggtggcgg aagcctgacg
     5341 gattccctta aaccgagcgg gcggcatttc gtctgccgct tgttttgcca atctgaaatg
     5401 gaatgatgat gcacgcttct gtccaaagcc gtttcgcacc gatactttat gttttgattt
     5461 tctttgccgg ttttttgacc gcgcaaatct ggttcaatca gaaagcctat actgaagagc
     5521 tgcctccgct tctgtccgca ttgtccgccg tcgcgctggt gtggctggcg tgggcgttcg
     5581 tgtcggcgcg ttcaaaggct aaggcggaaa agttcttccg cgaaaaaatg atacagaacg
     5641 aaagcataca ccccgtcctg cacgcttctt tgcaacactt ggaacacaag ccgcaaatgc
     5701 tcgccctgct ggtcaaaaac cacggcaaag ggatggcgga acaggtcagg ttcaaggcgg
     5761 aagtgctgcc cgacgacgaa gacgcgcgca cgattgccgc cgagttggca aaaatggata
     5821 tgtttgcatt ggggacggac gcggtcgcct cgggcgaaac ctatggacgc gtgttcgccg
     5881 atattttcga gttgtcggcg gctttggaag ggcgcgcgtt caaaggaatg ttgaaactga
     5941 cggcggaata taaaaacatc ttcggcgatg cctgccgttc ggaaacggcg ttggatttgg
     6001 gcgcgctcaa tcaggcgttg caggagattt caaaaacatc ggaaaagtcc aaacggatat
     6061 tttattgaag atggaaaaat gccgtctgaa acggaaggtg tttcagacgg catttttgtc
     6121 ggatgattaa ttattcggag cggttgaagc caaacttcac gcggctgcgg ccctgatccg
     6181 gtatattgtc caaatcgcgt cccggattgg cggcggtgtc gcctacggaa atatcggaga
     6241 tgttttccaa aatgatggcg gacgacaggt gttcggaggt gcggtaaacc attgccaagc
     6301 ccacttcttc ggcaggagtg gaaatcagtt cgacggtatc cctgcttttg aaattgttgg
     6361 agaggtcgac ctgcatcgtt ttcttgcgtt tgtagaggct caaaaccgtg cctttgtcca
     6421 aaccgtccgc ctcgcctttg tcgatggtga tggtttgaaa ctggccggca atccttgtgc
     6481 cttcaaacac ggaaacgatt ttagcctgaa ccgggcggga cggttcgtgc ggcatcatgt
     6541 tgaagcggtc ggtgtcttcc ggcattttca tcaggtagtc gccctgctgt atttcggaaa
     6601 tggcggtttc gaccaccagc ggctgtatcg aaggggtgcg cagcggggta atcaaaggat
     6661 gggtgcgggt atggtattcg ttgtctttcg gccgttctcc agcctgtttc gagcgttgtt
     6721 cgaggacaga gtcggtatag tcgagggagc gcacgatgcc gctgaatgcg acttcctgcc
     6781 cgaggaattt acccgtatcc ggatcggtga tgtttttatt gattcggtag gtcaggtagc
     6841 ggcccggctc tttcaggcct ttggtgtaaa ccctggtgcc tttggtgtac agcagcctgc
     6901 cttccgggcc cgagagcagg cgcggcgcgg cagcggtttc tttgcgggaa acgatttgcg
     6961 gatgccgcat aaagatgcgg tagaagttga catcgatggc gggaataccg tatccggaca
     7021 cttccttatc cggactcatt ttgacgacgg ggatgccgtc tgtctgttcc aagccgaggc
     7081 gcggttcgcc gtcaacgtgg cgcaacacca atacctggtc cggataaatc aggtcgggat
     7141 tgtggatttg atcccggttc gcgtcccaca ggcggctcca ttgccacggg ctgtacaggt
     7201 atttgcccga aatgccccac agggtgtcgc cctgtttgac cgtgtagcgt tccggcgcgt
     7261 tcgggcgcac ctccaaattt gccgccaaag tttgtgttga gaatgccata cctgccgcgc
     7321 agagcagggt tataatacga cgttgcataa ccgttcccct tatctgataa atttcggttt
     7381 gtcttgcttg attgggttgg aaaaagcggc ggcagcccct cgggatgtgc cgcgtgataa
     7441 aaaatgttcc gcattttaac atcgaattat ccgcaccatc acggtaatta tgaaaaacag
     7501 gcggcgtatc cgccgaagga aagagaaaat tatggcttta ttgaatatct tgcaatatcc
     7561 cgacgagcgt ctgcacacgg tggcaaagcc tgtcgaacaa gtcgacgagc gcatccggaa
     7621 gctgattgcc gatatgtttg aaacgatgta cgaatcgcgc ggcatcgggc tggcggcgac
     7681 gcaggtcgat gtgcacgagc gcgtggtcgt gatggatttg accgaagacc gcagcgaacc
     7741 gcgcgtgttc atcaaccccg tcatcgttga aaaagacggc gaaaccactt acgaagaggg
     7801 ctgcctgtcc gtgccgggca tttacgacac cgtaacccgc gccgaacgcg tcaaggtcga
     7861 ggctttgaac gaaaaaggcg aaaagttcac gctggaggcg gacggcttgc tggcgatttg
     7921 cgtgcagcac gagttggacc acctgatggg catcgtgttt gtcgaacgcc tgtcgcagct
     7981 caagcaggga cgcatcaaaa ccaagctgaa aaaacgtcag aaacatacga tttgaccctt
     8041 ttgccgtgcc gtctgaacgc tgcaaagttt tcagacggca cggtcttgtc cgacaatttt
     8101 acgcacacgc aggaatatgc tatgaaagtc atctttgccg gcacgcccga ttttgccgcc
     8161 gccgccttaa aagccgttgc cgccgccggt tttgaaatcc cgctggtgct gacccagccc
     8221 gaccgtccga aagggcgcgg tatgcaactg accgcctcgc ccgtcaaaca agccgcgctg
     8281 gaactcggtt tgcgcgtggc acagcccgaa aaactgcgta acaacgccga agccctgcaa
     8341 atgctcaaag aggtcgaggc agacgtaatg gtggttgccg cctacggttt gattctgccg
     8401 caggaagtgt tggatacgcc gaaacacggc tgcctcaaca tccacgcctc gctgctgccc
     8461 cgttggcgcg gcgcggcgcc gattcaacgc gcgattgaag ccggcgatgc cgagacaggc
     8521 gtgtgtatta tgcagatgga catcggtttg gacaccggcg atgtggtcag cgaacaccgc
     8581 tacgccatcc gacctaccga taccgccaac gaagtccacg acgcgctgat ggaaatcggt
     8641 gcggcggcgg ttgttgccga tttgcaacag cttcaaagca aaggccgtct gaacgcggtc
     8701 aaacagcccg aagaaggtgt tacttacgcg caaaaattga gcaaagaaga ggcgcgtatc
     8761 gattggagca aaagcgcggc ggttatcgaa cgcaaaatcc gcgccttcaa ccccgtgcct
     8821 gccgcgtggg ttgagtatca gggcaagccg atgaaaatcc ggcgcgccga agtggtggcg
     8881 caacaaggcg cggcaggcga agtgttgtcc tgttcggcgg acggtttggt cgttgcctgc
     8941 ggcgaaaacg cgctgaagat taccgaattg cagcctgccg gcggcaggcg gatgaatatc
     9001 gcggcgtttg cagcaggacg gcatatcgaa gcagggacga agctgtaaat cccttcagac
     9061 ggcattccga tccgcaaacg ggaatgccgt ctgaaaccat cagttgaaga aagcgaatca
     9121 cataatatga gtatggcact tgcccaaaaa cttgccgccg acagcattgc ggcggttgcc
     9181 gaaggacgca accttcagga cgtgttggtg cacatccgcg cggcgcatcc cgaccttacg
     9241 gcgcaggaaa acggcgcgtt acaggacatt gcctacggtt gccagcgtta tttgggcagt
     9301 ttgaaacata tgctcgcgca gatgctgaaa aagccgattg gcaatccgca gctcgaaagt
     9361 ctgcttttgg cggcgttgta ccaactgcat tacacgcgca acgcgccgca tgctgtggtc
     9421 aacgaagctg ttgaaagcat agccaaaatc gggcgcgggc agtaccgttc gtttgccaac
     9481 gcggttttgc gccgcttttt gcgcgaacgc gacaagcttg cagcttcctg taaaaaagac
     9541 gatgtggcga aacacaacct gccgctgtgg tgggtggctt acctgaaaaa ccattatccg
     9601 aaacactggc acaacatcac tgccgcgctg caatcccatc cgccgatgac gttgcgcgtc
     9661 aaccgccgac acggcaacgc cgaaagctat ttggaaaaac tggctgcgga aggcattgcg
     9721 gcaaaggcgt tggacgaata tgcggttacg ttggaagaag ccgtgccggt aaaccgtctg
     9781 cccggttttt cagacggcat tgtttcggta caggacttcg gcgcgcagca ggcggcgtat
     9841 ctccttaacc cgaaagacgg cgaacggatt ttggacgcgt gcgccgcgcc gggcggcaag
     9901 acggggcata tcttggaact ggcggattgc cgcgttaccg ccttggacat tgatgcaggc
     9961 cgtctgaagc gtgtggagga caatatcgcc cgtttgggct ttcagacggc atcggcggcg
    10021 tgtgccgatg cgcgggattt ggcggcgtgg tatgatggaa agcctttcga cacaatcctt
    10081 gccgacgtgc catgcaccgc ttccggcgtg gcgcggcgca atcccgacgt gaaatggctg
    10141 cgccgtccga ccgacgcgct caaaaccgcc cgccagcagg aagccctgct ggacgcactt
    10201 tggcagacgc tgaaacaggg cggcagaatg ctgcttgcca cctgttccgt gttcgtcgaa
    10261 gaaaacgacg ggcaattgca aaaattcctc aaccgccatg ccgatgccga accgatcgaa
    10321 tcgcgggtgc ttttaccgaa caaacaccaa gatggctttt attacgcgct tattcaaaag
    10381 cattaaacaa tggcttgtgc tgctgccgat gctttccgtt ttgccggacg cggcggcgga
    10441 ggggatagat gtgagccgcg ccgaagcgag gataaccgac ggcgggcagc tttccatcag
    10501 cagccgcttc caaaccgagc tgcccgacca gctccaacag gcgttgcgcc ggggcgtgcc
    10561 gctcaacttt accttaagct ggcagctttc cgccccgata atcgcttctt atcggtttaa
    10621 attggggcaa ctgattggcg atgacgacaa tattgactac aaactgagtt tccatccgct
    10681 gaccaaccgc taccgcgtta ccgtcggcgc gttttcgaca gactacgaca ccttggatgc
    10741 ggcattgcgc gcgaccggcg cggttgccaa ctggaaagtc ctgaacaaag gcgcgctgtc
    10801 cggtgcggaa gcaggggaaa ccaaggcgga aatccgcctg acgctgtcca cttcaaaact
    10861 gcccaagcct tttcaaatca atgcattgac ttctcaaaac tggcatttgg attcgggttg
    10921 gaaacctcta aacatcatcg ggaacaaata atgcgccgtt ttctaccgat cgcagccata
    10981 tgcgccgtcg tcctgttgta cggactgacg gcggcaaccg gcagcaccag ttcgctggcg
    11041 gattatttct ggtggattgt tgcgttcagc gcaatgctgc tgctggtgtt gtccgccgtt
    11101 ttggcacgtt atgtcatatt gctgttgaaa gacaggcgcg acggcgtatt cggttcgcag
    11161 attgccaaac gcctttccgg gatgtttacg ctggttgccg tactgcccgg cgtgtttctg
    11221 ttcggcgttt ccgcacagtt catcaacggc acgattaatt cgtggttcgg caacgatacc
    11281 cacgaggcgc ttgaacgcag cctcaatttg agcaagtccg cattgaatct ggcggcagac
    11341 aacgccctcg gcaacgccgt ccccgtgcag atagacctca tcggcgcggc ttccctgccc
    11401 ggggatatgg gcagggtgct ggaacattac gccggcagcg gttttgccca gcttgccctg
    11461 tacaatgccg caagcggcaa aatcgaaaaa agcatcaacc cgcacaagct cgatcagccg
    11521 tttccaggta aggcgcgttg ggaaaaaatc caacgggcgg gttcggtcag ggatttggaa
    11581 agcataggcg gcgtattgta cgcgcagggc tggctgtcgg cgggtacgca caacgggcgc
    11641 gattacgcct tgtttttccg tcagccggtt cccaaaggcg tggcagagga tgccgtctta
    11701 atcgaaaagg caagggcgaa atatgctgag ttgagttaca gcaaaaaagg tttgcagacc
    11761 tttttcctgg caaccctgct gattgcctcg ctgctgtcga tttttcttgc actggtcatg
    11821 gcactgtatt tcgcccgccg tttcgtcgaa cccgtcctat cgcttgccga gggggcgaag
    11881 gcggtggcgc aaggcgattt cagccagacg cgccccgtgt tgcgcaatga cgagttcggg
    11941 cgtttgacca agttgttcaa ccacatgacc gagcagcttt ccatcgccaa agaagcagac
    12001 gagcgcaacc gccggcgcga ggaagccgcc agacattatc ttgaatgcgt gttggagggg
    12061 ctgaccacgg gcgtggtggt gtttgacgaa caaggctgtc tgaaaacctt caacaaagcg
    12121 gcggaacaga ttttggggat gccgcttacc cccctgtggg gcagcagccg gcacggttgg
    12181 cacggcgttt cggcgcagca gtccctgctt gccgaagtgt ttgccgccat cggcgcagcg
    12241 gcaggtacgg acaaaccggt ccatgtgaaa tatgccgcgc cggacgatgc caaaatcctg
    12301 ctgggcaagg caaccgtcct gcccgaagac aacggcaacg gcgtggtaat ggtgattgac
    12361 gacatcaccg ttttgataca cgcgcaaaaa gaagccgcgt ggggcgaagt ggcaaaacgg
    12421 ctggcacacg aaatccgcaa tccgctcacg cccatccagc tttccgccga acgtctggcg
    12481 tggaaattgg gcgggaagct ggatgagcag gatgcacaaa tcctgacgcg ttcgaccgac
    12541 accatcgtca aacaggtggc ggcattgaag gaaatggtcg aagcattccg caattatgcg
    12601 cgttcccctt cgctcaaatt ggaaaatcag gatttgaacg ccttaatcgg cgatgtgttg
    12661 gcattgtatg aagccggtcc gtgccggttt gcggcggagc ttgccggcga accgctgatg
    12721 gtggcggcgg atacgaccgc catgcggcag gtgctgcaca atattttcaa aaatgccgcc
    12781 gaagcggcgg aagaagccga tgtacccgaa gtcagggtaa aatcggaagt ggggcgggac
    12841 ggtcggattg tcctgacggt ttgcgacaac ggcaaagggt tcggcaggga aatgctgcac
    12901 aacgccttcg agccgtatgt aacggacaaa ccggcgggaa cgggattggg tctgcccgtg
    12961 gtgaaaaaaa tcattgaaga acacggcggc cgcatcagcc tgagcaatca ggatgcgggt
    13021 ggggcgtgtg tcagaatcat cttgccaaaa acggtaaaaa cttatgcgta gcagcgatat
    13081 tttaattgta gacgacgaaa tcggcatccg cgacctgctg tcggaaatcc tgcaggacga
    13141 aggttattcg gtcgcattgg cggaaaacgc cgaagaggcg cgcaagctgc gccatcaggc
    13201 gcgtccggcg atggtgctgc tggatatttg gatgcccgat tgcgacggca tcaccctttt
    13261 gaaggagtgg gcgaaaaacg ggcagcttaa tatgccggtc gtcatgatga gcgggcatgc
    13321 cagcattgac acagcagtgg aagccaccaa aatcggtgcg ctcgactttt tggaaaaacc
    13381 gatctccctg caaaaactgc tgtctgccgt cgaaaacgcg ttgaagtacg gtgcggcgca
    13441 aaccgaaacg gggcctgtat tcgacaagct gggcaacagt gcggcgattc aggagatgaa
    13501 ccgcgaagtc gaagcggcgg caaagcgcac gtcccctgta tttttgacgg gtgaggtggg
    13561 ttcgccgttt gaaaccgtag cgcgctattt ccataaaaac ggtacgccgt gggtcagtcc
    13621 ggcaagggtc gaatatctga tcgatatgcc gacggaactg ttgcagaaag ctgaaggcgg
    13681 tgttttatat gtgggcgata ttgcccaata cagccgcaat atccaaaccg gcattgcctt
    13741 tatcatcggc aaggcagaac gctgccgcgt cagggtggtc gcatcgggca gcagggcggc
    13801 aggttcagac ggcattgcct gcgaggaaaa gctggcggaa ctgctgtcgg aatcggtcgt
    13861 ccgtattccg ccgctgcgta tgcagcatga agacattccc ttcctgatac aggggattgc
    13921 ctgcaatgtg gcggaaagcc aaaagattgc gcctgcctca ttcagtgaag aggcacttgc
    13981 cgcattgacc cgttacgact ggccgggaaa tttcgaccaa ctgcaaagcg tcgttgcaac
    14041 gctgttgttg gaggcggacg gacaggaaat cggcgcaggg gcggtttctt cccttttggg
    14101 gcagaatgtg cctgccgagg gagcggaaga tatggtgggc gggtttaatt tcaacctgcc
    14161 cctgcgcgaa ttgagggagg aggtggagcg gcgttatttc gagtaccaca tcgcccaaga
    14221 aggtcagaat atgagcaaag tggcgcagaa agtcggtttg gaacgcacgc acctttaccg
    14281 caaactcaaa cagctcggca tcggcgtttc gcgccgggcg ggggaaaaaa ccgaagaata
    14341 ggcccggacg gccggttttc cggctgcggg cttttgtttt cagacggcat ttggtgcaaa
    14401 tgccgtctga aatcgtaagg ggacggattt tatgacagag gacgaacgtt tcgcgtggct
    14461 gcaattggcg tttacgccct atatcggcgc ggaaagcttc ctgctgctgc tgcgccgttt
    14521 cggcagcgcg tcaaacgccc tgtccgcacc ggcggaacag gtcgccccgg cggtgcggca
    14581 caagcaggcg gccgaggctt ggcgcaatgc ggaaaaacgc gcctcggcgc ggcaggcggc
    14641 agaagcggcg ttggaatggg aaatgcggga cggatgccgc ctgatgctgc ttcaggatga
    14701 agatttcccc gaaatgctga cgcaggggct gaccgcgccg ccggttttgt ttttgcgcgg
    14761 caacgtgcgg ctgctgcaca agccttccgc cgccatcgtc ggcagccgcc atgccacgcc
    14821 gcaggcgatg cggattgcca aagatttcgg taggacgttg tctgggaaag gcattcccgt
    14881 tgtgtcgggt atggcttcgg gcatcgatac cgccgcccat cagggcgcac tggaggcaga
    14941 aggcggcacc atcgctgtgt gggggacggg catagaccgc atttatccgc cgtccaataa
    15001 aaaccttgcc tatgaaatcg ccgaaaaagg gctgattgtc agcgagttcc ccatcggtac
    15061 gcggccgtat gccggcaact ttccgcgccg caaccgcctg attgccgcgc tgtcgcaggt
    15121 tacgctggtg gttgaagctg cgttggaatc cggttcgctg attaccgccg gcttggcggc
    15181 agaaatgggg cgcgaagtca tggcggtacc cggttcgata gacaatccgc acagcaaagg
    15241 ctgccacaaa ctgattaaag acggcgcgaa attggtggaa tgcctggacg acatcctgaa
    15301 cgaatgcccg gggctattgc aaaatacggg tgcttcatca tattctataa ataaggatac
    15361 gcccgacacg ggcagtcgcg ccgttcagac ggcatacgcc ccgccgcctg ccgcaaaaat
    15421 gccgtctgaa ggggcggcag gcggcacagc cgtcggcggc atactggata aaatgggttt
    15481 cgaccccatc catcccgacg tgcttgccgg acagttggct atgcctgccg cagatttgta
    15541 tgccgcactg ttggaattgg aattggacgg cagcgttgcc gcaatgcccg gcggcagata
    15601 ccagcgtatc cgaacttgaa cgcactttat attaaggaac acgaatgacc gaagtcatcg
    15661 cctacctcat cgaacatttc caagatttcg atacctgtcc gccgcccgaa gacttgggta
    15721 tgctgcttga agaagcgggt ttcgatacga tggaaatcgg caacaccctg atgatgatgg
    15781 aagtattgct caacagctcc gaattttccg ccgaacctgc cgacagcggc gcattgcgcg
    15841 tgtacagcaa agaagaaacc gacaacctgc cgcaggaagt gatggggctg atgcagtatc
    15901 tgattgaaga aaaagccgtc agctgcgaac agcgggaaat catcatccac gcgctcatgc
    15961 acattccggg cgacgaaatt accgtagata ccgccaaagt gctgaccctg ctgcttttat
    16021 gggcaaacaa gagcgagctg cccgtgttgg tcggcgacga gctgatgagc gcgcttttac
    16081 tcgacaacaa acccacgatg aactgaagcg gcttcagacg gcccgcccga ggccgtctga
    16141 aacgtcggca tcaaaaccac catccagaga acgacaaatg gcgaaaaacc tattaatcgt
    16201 cgaatccccg tccaaagcca aaaccctgaa aaaatatttg ggcggcgatt ttgaaatcct
    16261 tgcatcctac ggacacgtcc gcgaccttgt ccccaaaagc ggcgcggtcg atcccgacaa
    16321 cggctttgcg atgaaatacc aattgattag ccgcaacagc aaacacgtcg atgccatcgt
    16381 tgccggtgcc aaagaagctg aaaacatcta cctcgccacc gacccggata gggaaggcga
    16441 agccatttcc tggcatcttt tggaaatcct caaatccaaa cgcggcttga aaaacatcaa
    16501 gccgcagcgt gtcgtgttcc acgaaatcac caaaaacgcc gtgctcgatg ccgtcgccaa
    16561 tccgcgcgaa atcgaaatgg acttggtcga tgcgcaacaa gcccgtcgcg ctttggacta
    16621 tttggtcggc tttaaccttt cgccattgtt atggaaaaaa atccgccgcg gtttgagcgc
    16681 gggtcgtgtg caaagtcccg ctttgcgcct gatttgcgaa cgcgaaaacg aaatccgcgc
    16741 gtttgaagcg caggaatatt ggacggtgca tctcgacagc cacaaaggcc gcagcaagtt
    16801 caccgccaaa ctcgcccaat acaacggcgc gaaactcgaa caattcgacc tgccgaacga
    16861 agccgcgcaa gccgacgtgt tgaaagaact cgaaggcaaa gaggccgtcg ttaccgccat
    16921 tgaaaagaaa aagcgcagcc gcaatcccgc cgcgccgttc accacttcta ccatgcagca
    16981 ggatgctgtg cgcaaactcg gcttcaccac cgaccgcacc atgcgtaccg cccaacagct
    17041 ttatgaaggt atagacgtag ggcagggcgc gatcggtctg attacctata tgcgtaccga
    17101 cagcgtgaat ttggcggatg aagcgttaac cgaaatccgc cattacatcg aaaacaaaat
    17161 cggcaaagaa tatctgccga gtgccgccaa acaatacaaa accaaatcca aaaacgccca
    17221 agaagcgcac gaagcgatcc gcccgacttc cgtgtaccgc acgcccgaaa gcgtcaaacc
    17281 cttcctgagc gcagaccagt tcaaactcta tcaaatgatt tggcagcgca ccgtcgcctg
    17341 tcagatgacg cccgccaaat tcgaccaaac caccgtcgat attaccgtcg gcaaaggcgt
    17401 attccgcgta accggacaag tgcaaacctt cgcaggcttc ctcagcgttt acgaagaaag
    17461 cagcgacgat gaagaaggag aagacagcaa aaaactgccc gaaatgagcg aaggcgacaa
    17521 attgcccgtg gacaaacttt acggcgaaca acactttacc actccgccgc cacgctacaa
    17581 cgaagccacg ctggttaaag ccctcgaaga atacggcatc ggccgcccct cgacctacgc
    17641 cagcatcatc tccacgctca aagaccgcga atacgttacc cttgagcaaa aacgcttcat
    17701 gcccaccgac acaggcgaca tcgtcaacaa attcctgacc gaacacttcg cccaatacgt
    17761 cgattaccac tttaccgcca aactcgaaga ccagcttgac gaaattgccg acggcaaacg
    17821 ccaatggatt cccttgatgg acaaattctg gaaaccgttc atcaaacaag tggaagaaaa
    17881 agaaggcatc gaacgcgcca aatttaccac gcaggaactt gatgaaacct gcccgaaatg
    17941 cggcgaacac aaactgcaaa tcaagttcgg caaaatgggc cgtttcgttg cgtgtgccgg
    18001 ctatcccgag tgcagctaca cgcgcaatgt caatgaaacc gccgaagaag ccgcagagcg
    18061 catcgccaaa gccgaagccg aacaggcaga actcgacgga cgcgaatgtc ctaaatgtgg
    18121 tggtcgccta gtgtacaaat acagccgaac cggcagcaaa ttcatcggct gcgccaacta
    18181 ccccaaatgc aaacacgtcg agccgctgga aaaaccgaaa gataccggcg tccagtgtcc
    18241 gcaatgcaaa aaaggcaacc tcgtcgagcg caaatcccgc tacggcaaac tgttttacag
    18301 ttgcagcacc tatcccgact gtaactacgc cacatggaat ccacccgttg cagaaagctg
    18361 tccaaaatgc gcatggccgg ttttgaccat caaaaccacc aaacgctggg gtgtagaaaa
    18421 agtctgccca caaaaagaat gcggctggaa agaacagatt gaaccgcccg cgccgaagga
    18481 gtaagattag gttggtttga aagagaaaag gtcgtctgaa aaattttcag acgacctttg
    18541 cttttctgtg attggtttat ttgaatccgc gtgttgtttt aaagtccgat aaaatccggt
    18601 tcatttcagg cacaaacaag gcgatgtaat cgtaagatag accgcgactg gcactgggat
    18661 ggggaaagca gacgacttcg caatcttcaa acgattggaa tttgacattg aaacgtgtac
    18721 cgtcaaattc tttttgcacc gtctccagcg gtttggtctg cttaccgacc aactgctcga
    18781 agcgtggcag tacattttgg ttgttcagaa aatccgccaa cctgctgccc atgaagagga
    18841 tgactttcgg acgcagtttt tcgatgtggt agagaaaatt atcgatgtgc tcgggttgtg
    18901 tgaacttgtc gggattgtcg atagtgttgc cctgtgtagc agcccagttg gtttgaacca
    18961 gggatttttc aaatgcaccg cccaatccat tttcgtctaa ggggtgtccc cacatttcaa
    19021 accaattttt tatcgtattg tcgtaacgcc acttttttgc ctgctctccg aaatagaggg
    19081 atttgtttgc aaatgtatgg tcgattttgt tttcagggag tttgtattca cctgctacat
    19141 aagcagcctc atcggcttta ctccaacccc attcataccc acaaattatt aaaccatgtt
    19201 tgtcattgta gcctttgaac agactgttgc tcaaattcaa atccttcatc atgaaccctt
    19261 ccttttaaaa tttaagagcg attgacttca atgtttttag atggggtgga aaaatccttg
    19321 tgtaggcaac ataaatttaa taaatttatt gataatccga aacctactaa tagcgtacct
    19381 ataaaagctt tttcattacg ttcagtatga cggtcacgtc gttcatattt tttacgcttg
    19441 ctgttcccca ttattgaagc taagccaaat gatatggcga gaattgccca aacaattgta
    19501 cttaataaca attttcccca tactatattt tgaatgtgga gatgtgcaca gaatccaata
    19561 tagctaagga taatagttaa tataataaaa aaagaccacc aagggtaaag agataggaat
    19621 tccatgtttt cctttttttg taaaaaggaa aaaattttat ctaagagtta attgcctaac
    19681 cagccagaag aagtttaaaa tctatcccaa taattcaacc atctatacag aaagttcagc
    19741 ttatggaaac ccacgaaaaa atccgcctga tgcgcgaatt gaataaatgg tcccaggagg
    19801 atatggcgga aaagctggcg atgtcggcag gcgggtatgc caaaatcgaa cggggcgaaa
    19861 cgcagttaaa tatcccgcgt ttggagcagt tggctcagat tttcaaaatc gatatgtggg
    19921 acttgctcaa atcgggcggt ggtgggatgg tgtttcagat taatgaaggt gatagtggtg
    19981 gcgatattgc gttgtatgcg tcgggtgatg tttcgatgaa aatagaattt ttaaaaatgg
    20041 agttgaaaca ctgcaaagaa atgttggaac aaaaagacaa agaaatcgag ctgctccgca
    20101 agctgaccga aaccgtttaa acagatatgc cgtctgaaaa aagttttcag acggcatatt
    20161 ctttgacagg tcttgtataa taccgtttga acttacaggt ttttgattat ggcggcaggc
    20221 aaacatacca aacacagcaa ccgggtacgc attatcggcg ggcaatgccg gggcaggaaa
    20281 ttgagtttta catccgccga cggactgcgt ccgacacccg acagcgtgcg tgaaacgctg
    20341 tttaactggc tgggacagga tttgacgggt aaaacggttt tggatctctt cggaggcagc
    20401 ggcgcactcg gtatagaagc cgcttcgcgc aacgccaaac gcgtgctgat ttcggataac
    20461 aaccgccaaa ccgtgcagac cttgcagaaa aacagtcgcg aactgggttt ggggcaggtg
    20521 caaatcgtct tttcagacgg catcgcatat ttgaagaccg tatccgaaca gtttgatgtt
    20581 gtctttctcg acccgccgtt tgcatggcag gactggcaaa tcctgttcga tgccttgaag
    20641 ccgtgcctga acccccgggc attcgtctat ctcgaggcgg gtacgctgcc gaatattccc
    20701 gattggctga cggaatatag agaagggaaa tcggggcaga gtacattcga attaagggtt
    20761 ttccaagtgg ctgaataata tgcgctttga taatcatttc cgagttgtaa acattcgttt
    20821 gcaaccgtcc ggttcaaaaa aaccttgtgc tataatccgc gcccgcccgg ttttgataat
    20881 ttagtggaaa aggaaaagaa atgtcgcttt ttattaccga cgagtgcatc aactgcgacg
    20941 tatgcgaacc cgaatgcccc aatgatgcca tttcccaagg cgaggaaatt tacgaaatca
    21001 accccaacct ctgcacgcag tgcgtcggac actacgatga gccgcagtgc cagcaggttt
    21061 gcccggtgga ctgcatcctg attgacgaag aacatcccga aacccatgac gagttgatgg
    21121 cgaaatacga aaagattatc cagtttaaat aaattctttt taaaacatca aattatgtct
    21181 gttttgaaat aaaatcaaaa aaaaacttga cggaaaagca agccgctaat aaactaacgt
    21241 tctcttttgg agggattccc gagcggtcaa agggggcaga ctgtaaatct gttgcgaaag
    21301 cttcgaaggt tcgaatcctt ctccctccac caaaattctt acttggggca gtagcgagta
    21361 atgcgggtgt agctcaatgg tagagcagaa gccttccaag cttacggtga gggttcgatt
    21421 cccttcaccc gctccaaaca attaggccca tgtagctcag gggtagagca ctcccttggt
    21481 aagggagagg tcggcagttc aaatctgccc atgggcacca tccctcgatt attcatttct
    21541 ttaaggctta gatatatagg atattg
//
LOCUS       DAWGNT010000019        21165 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.019, whole genome shotgun sequence.
ACCESSION   DAWGNT010000019 DAWGNT010000000
VERSION     DAWGNT010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21165)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21165)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21165
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.019"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(30..1487)
                     /gene="der"
                     /locus_tag="WHR98_000487"
     CDS             complement(30..1487)
                     /gene="der"
                     /locus_tag="WHR98_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEZ2307212.1"
                     /translation="MKPTIALVGRPNVGKSTLFNRLTRTKDALVHDLPGLTRDRHYGH
                     GKVGSKPYLVIDTGGFEPVVDSGILHEMAKQTLQAVDEADAVVFLVDGRTGLTPQDKI
                     IADRLRQSPRPVYLAVNKGEGGNRAVLAAEFYELALGDPYVISGAHGDGVYYLIEEIL
                     ENFPEPEVEEADAKHPVFAVIGRPNVGKSTLVNAILGEERVIAFDMAGTTRDSIHIDF
                     ERKGKPFTIIDTAGVRRRGKVDEAVEKFSVIKAMQAVEAANVAVLVLDAQQDIADQDA
                     TIAGFALEAGRALVVAVNKWDGISEERREQVKRDINRKLYFLDFAKFHFISALKERGI
                     DGLFDSIQAAYNAAMIKMPTPKITRVLQSAIERQQPPRAGLVRPKMRYAHQGGMNPPV
                     IVVHGNSLHAISDSYTRYLTQTFRKAFNLQGTPLRIQYNVSENPYENAEDKPKKKPLR
                     RVSLSNRIEKREDRKEEKNRFKKKTKVSVKKQFSK"
     gene            complement(1641..2270)
                     /locus_tag="WHR98_000488"
     CDS             complement(1641..2270)
                     /locus_tag="WHR98_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfgM family protein"
                     /protein_id="HEZ2307213.1"
                     /translation="MAAHLEEQQELDNFKYFWKTTGKWLFAVLILAALGYLGYTVYQN
                     RAASQNQEAAAILAEIVEKAQNKAPQSEINAELTKLQQSYPHSISAAQATLMVAATEF
                     DAQRYDVAEGHLKWVLSNQKDSLIQALAAQRLGVVLLQQKKYDAALAALDTPVEADFA
                     PLLMETKGDVYAAQGKSQEALKNYGQALEKMPQDSVGRELVQMKLDSLK"
     gene            complement(2271..3566)
                     /gene="hisS"
                     /locus_tag="WHR98_000489"
     CDS             complement(2271..3566)
                     /gene="hisS"
                     /locus_tag="WHR98_000489"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEZ2307214.1"
                     /translation="MAQKIQSVKGMNDLLPVEQKDFKLTAAFWQAFEDTVGRWTRAYG
                     YQQIRTPIVEQTGLFVRSIGEETDVVGKEMYTFSDSNDSLSLSLRPEGTASCLRAVVE
                     HNLLYNSPQKLWYMGPMFRRERPQKGRYRQFHQVGIEALGFEGPDIDAEIIAMSADLW
                     EKLGIREYLTLEINSLGNREERAAHRAALVEYLTRYEDKLDEDSKRRLKTNPLRVLDT
                     KNPDLQEICNAAPRLVDYLGEASQNHYARFKAMLDGLGIQYIENPRLVRGLDYYNQTV
                     FEWTTDKLGAQATVCGGGRYDGLIEELGGKPAPSIGFAMGIERLLLLVSEYGSLEVNA
                     APDVYAMHQGERADLQVMKYAQALRAQGFNVMQHSGYQSLKAQMKKADNSGARFALIV
                     AQDELANGTVTLKDMNGAHGQQTVAAEDLTHTLQQWKNA"
     gene            complement(3693..4349)
                     /locus_tag="WHR98_000490"
     CDS             complement(3693..4349)
                     /locus_tag="WHR98_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEZ2307215.1"
                     /translation="MEQKRRFAASLLLAAALPLCAHSFPFAEENPIAYGKVKIQSWKA
                     RRDFNIVKQDLDFSCGAASVATLLNNFYGQTLTEEEVLKKLDKEQMRASFEDMRRIMP
                     DLGFEAKGYALSFEQLAQLKIPVIVYLKYRKDDHFSVLRGIDGNTVLLADPSLGHVSM
                     SRAQFLEAWQTREGNLAGKILAVVPKKAETISNKLFFTHHPKRQTEFAVEQIRQARAE
                     "
     gene            complement(4510..4797)
                     /locus_tag="WHR98_000491"
     CDS             complement(4510..4797)
                     /locus_tag="WHR98_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307216.1"
                     /translation="MDDLIVAFLGYLSGKYSEGKISRLEISLTAGSIFFVVFFIHELI
                     IFIIDGNKENLWNFITEMMKDLFLFSCSVCLLFYFLLFIAETIGKTINKIK"
     gene            complement(5001..5216)
                     /locus_tag="WHR98_000492"
     CDS             complement(5001..5216)
                     /locus_tag="WHR98_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307217.1"
                     /translation="MVNKYIKTAISITAISIFYLLTQESSGKTEEPSYFLMFMFLNSL
                     WFEENKTVMAAVTAMIAAHLIFVTLSD"
     gene            complement(5206..5601)
                     /locus_tag="WHR98_000493"
     CDS             complement(5206..5601)
                     /locus_tag="WHR98_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307218.1"
                     /translation="MKKQITAAVMMLSMIAPAMANGLDNQTFENQVFHTQADAPMQLA
                     ELSQKEMKETEGAWGPVGAFIGGVGGGIGYMMNQQLSGSRFSPTAFTLAVGAGAFGGA
                     TAGPAGVVWGFNRSLATGMVTGVAQRYGK"
     gene            complement(5644..6513)
                     /locus_tag="WHR98_000494"
     CDS             complement(5644..6513)
                     /locus_tag="WHR98_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="meta-pathway of phenol degradation family
                     protein"
                     /protein_id="HEZ2307219.1"
                     /translation="MKRIFLSALPAILPLSAYADLPLTIEDIMTDKGKWKLETSLTYL
                     NSENSRAALAAPVYIQTGATSFIPIPTEIQENGSNTDMLAGTLGLRYGLTGNTDIYGS
                     GSYLWHEERKLDGNGKTRNKRMSDISAGISHTFLKDDKNPALISFLESTVYEKSRNKA
                     SSGKSWLIGATTYKAIDPIVLSLTAAYRINGSKTLSDGIRYKSGNYLLLNPNISFAAN
                     DRISLTGGIQWLGRQPDRIDGKKESARNTSTYAHFGAGFGFTKTTALNASARFNVSGQ
                     SSSELKFGVQHTF"
     gene            6678..7601
                     /locus_tag="WHR98_000495"
     CDS             6678..7601
                     /locus_tag="WHR98_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEZ2307220.1"
                     /translation="MKKRNNPLPLLNGVKPSYLVLPHEKQFYGLPLLHFLCIRFPFVG
                     ADDWRRRLNSGFVVGSDGAALDEHTLFEPGKVMFYYRETSSEDEPRIPFEEKILHIDE
                     HLIVVDKPHFLPVIPSGRFLRETLLTRLRLRPELQHLNVEDITPLHRLDKDTAGVMLL
                     SHNPATRGAYQTMFQNKTVWKTYEALAPTRTDLPYPLDVVSRLVRGEKFFTTQEAEGE
                     SNAHTTVELIENRGEFSLYRLTPHTGKKHQLRVHMMGLGMPLLNDALYPVPSEAGSED
                     YRKPLKLLAKKIAFADPLSGRERVFCSGFCL"
     gene            complement(7679..8320)
                     /locus_tag="WHR98_000496"
     CDS             complement(7679..8320)
                     /locus_tag="WHR98_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEZ2307221.1"
                     /translation="MQKPETIHIPGPAGILETIHIPSEQVPARGVAVINHPNPLQGGT
                     NTNKVIQTAAKALSKLGFHCYLPNLRGVGGSEGTHDYGHGETQDCIAVIDYARAQHPE
                     APEFALSGFSFGGYVATFAAQARIPDLLLLIGAAVCHYTGRPEPSAVPNVAKTLMIHG
                     AEDEVVEIGKALKWAEPQDLPVITIAGSTHFFHGKLIVLRDTILRFAPVCLNG"
     gene            complement(8375..9166)
                     /locus_tag="WHR98_000497"
     CDS             complement(8375..9166)
                     /locus_tag="WHR98_000497"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HEZ2307222.1"
                     /translation="MARHPYRRLRPAKSSFPEVGISEEGNIRSLHLGSDTIQSSMNLD
                     HPSELVLSYSRAMMGWLLFTDALPQHITQIGLGGGSFARWIDTYLPDTRQTAVDINPQ
                     VIAIARSLFELPFEGEKFEIIEADGAEYIKVFRHNTDVILVDGFDGEQIIDALVEEPF
                     FRDCRNALSSDGIFATNWWSGDKRYQRFIERLLSVFEGRVLELPAESHGNVAVMAFQS
                     SPKEQNIDKLKKRADKLSNAYGLDFHRMLADLKASNPNNGKHFHL"
     gene            9332..9407
                     /locus_tag="WHR98_000498"
     tRNA            9332..9407
                     /locus_tag="WHR98_000498"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9365..9367,aa:Thr,seq:tgt)
     gene            9442..9517
                     /locus_tag="WHR98_000499"
     tRNA            9442..9517
                     /locus_tag="WHR98_000499"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9475..9477,aa:Thr,seq:tgt)
     gene            9659..10450
                     /gene="panB"
                     /locus_tag="WHR98_000500"
     CDS             9659..10450
                     /gene="panB"
                     /locus_tag="WHR98_000500"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEZ2307223.1"
                     /translation="MITVNTLQKMKAAGEKIAMLTAYESSFAALMDDAGVEMLLVGDS
                     LGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAEL
                     MAAGAHMVKLEGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQA
                     LLNDAKAHDDAGAAVVLMECVPAELVKKVTETVACPTIGIGAGVDCDGQVLVMHDMLG
                     IFPGKTAKFVKNFMHGQSSIQAAVRAYVAEVKAKTFPAAEHIFAD"
     gene            10573..11409
                     /locus_tag="WHR98_000501"
     CDS             10573..11409
                     /locus_tag="WHR98_000501"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEZ2307224.1"
                     /translation="MQIIHTIRELRAWRKNAGKVAFVPTMGNLHEGHLALVREAKKRA
                     DSVVVSIFVNRLQFGQGEDFDKYPRTLQQDADKLEAEGVAVVFAPDEKELYPNVEQRY
                     NVEPPNLQNELCGKFRPGHFRGVATVVSKLFNIVAPDVACFGKKDYQQLAVIKGLTED
                     LNFDVEIVPVDTGRAEDGLALSSRNQYLSAAERDEAPRLYCELKAVAESLAQGSLDYA
                     GLERQAADHLTAAGWVVDYVEIRRADTLEVARAGDKKLVVLAAARLGTTRLIDNLEIK
                     LP"
     gene            11574..13412
                     /locus_tag="WHR98_000502"
     CDS             11574..13412
                     /locus_tag="WHR98_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307225.1"
                     /translation="MLPARFTILSVLAAALLAGQAYAAGAADAKPPKEVGKVFRKQQR
                     YSEEEIKNERARLAAVGERVNQIFTLLGGETALQKGQAGTALATYMLMLERTKSPEVA
                     ERALEMAVSLNAFEQAEMIYQKWRQIEPIPGKAQKRAGWLRNVLRERGNQHLDGLEEV
                     LAQADEGQNRRVFLLLAQAAVQQDGLAQKASKAVRRAALKYEHLPEAAVADVVFSVQG
                     REKEKAIGALQRLAKLDTEILPPTLMTLRLTARKYPEILDGFFEQTDTQNLSAVWQEM
                     EIMNLVSLHRLDDAYARLNVLLERNPNADLYIQAAILAANRKEGASVIDGYAEKAYGR
                     GTEEQRSRAALTAAMMYADRRDYAKVRQWLKKVSAPEYLFDKGVLAAAAAVELDGGRA
                     ALRQIGRVRKLPEQQGRYFTADNLSKIQMLALSKLPDKREALRGLDKIIEKPPAGSNT
                     ELQAEALVQRSVVYDRLGKRKKMISDLERAFRLAPDNAQIMNNLGYSLLSDSKRLDEG
                     FALLQTAYQINPDDTAVNDSIGWAYYLKGDAESALPYLRYSFENDPEPEVAAHLGEVL
                     WALGERDQAVDVWTQAAHLTGDKKIWRETLKRHGIALPQPSRKPRK"
     gene            13552..14133
                     /locus_tag="WHR98_000503"
     CDS             13552..14133
                     /locus_tag="WHR98_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein LolB"
                     /protein_id="HEZ2307226.1"
                     /translation="MKHTVSASVILLLTACAQLPQNNENLWQPSEHISSFAAEGRLAV
                     KAEGKGSYANFDWTYQPLVETININTPLGSTLGQLCQDRDGALAVDGKGNVYQAESAE
                     ELSRQLVGFKLPIQYLHIWADGRRVAGAPYRILPDGILEQYGWTVGRTADSGGQVRTL
                     QLNNGNLNIRLVFTEIGIPSETETPERCAARTR"
     gene            14143..14988
                     /gene="ispE"
                     /locus_tag="WHR98_000504"
     CDS             14143..14988
                     /gene="ispE"
                     /locus_tag="WHR98_000504"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEZ2307227.1"
                     /translation="MNIADGRQAFPAPAKLNLDLRITGRREDGYHNIESIFCLIDLQD
                     TVYLKPRDDGKIILHNPVDGMPQEADLSYRAASLLQKYARNPAGVEIWLDKKIPTGAG
                     LGGGSSDAATVLLVLNRWWQCSRTTQQLIDLGATLGADVPFFIFGKNAFASGIGEKLI
                     GMDIPKQWYVIVKPPVHVSTAKIFTHEGLTRNSASSIMPTFQNLQPFRNDMQAVVFKE
                     YPEVWKAYSELSRYGFALMTGSGACVFTACQDRDSAYNIYRQVSGLYEAYLAEGLSKH
                     PLLSV"
     gene            14996..15071
                     /locus_tag="WHR98_000505"
     tRNA            14996..15071
                     /locus_tag="WHR98_000505"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:15029..15031,aa:Gln,seq:ttg)
     gene            15084..15159
                     /locus_tag="WHR98_000506"
     tRNA            15084..15159
                     /locus_tag="WHR98_000506"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:15117..15119,aa:Gln,seq:ttg)
     gene            15168..15243
                     /locus_tag="WHR98_000507"
     tRNA            15168..15243
                     /locus_tag="WHR98_000507"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:15201..15203,aa:Gln,seq:ttg)
     gene            15410..16393
                     /locus_tag="WHR98_000508"
     CDS             15410..16393
                     /locus_tag="WHR98_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEZ2307228.1"
                     /translation="MAAYDSLMVFTGNANPELAQRVVRHLDISLGNASVSKFSDGEVA
                     VELLENVRGRDVFILQPTCAPTNDNLMEILTMADALKRASAGRITTAIPYFGYARQDR
                     RPRSVRVPISAKLVANMLYSAGIDRVLTVDLHADQIQGFFDIPVDNIYATPILLNDIK
                     QQRIENLTVVSPDIGGVVRARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDIQGRTC
                     LIVDDMIDTANTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTDT
                     IPLSEAAKNCDRIRQVTIAGLLAETVRRISNEESVSYLFNEEVMTGSMLLP"
     gene            16460..17032
                     /locus_tag="WHR98_000509"
     CDS             16460..17032
                     /locus_tag="WHR98_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003755233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEZ2307229.1"
                     /translation="MTYEIQASVREAQGTGASRRLRREGQIPGILYGEGQEPVAIAVD
                     HKTVFYALEKESFHTALIKLSLNGETKDVIVRDFQMHPFRREVQHIDFQAVKADQPVR
                     IRVPLHIVNAENSQAVKLQGGRVSLLNTTVEVLALPANIPAFLDLDCAEVVAGDILHL
                     SDIKLPEGVESVSLKRNENLAVATVTGKKR"
     gene            complement(17157..18326)
                     /locus_tag="WHR98_000510"
     CDS             complement(17157..18326)
                     /locus_tag="WHR98_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEZ2307230.1"
                     /translation="MTAHKILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETL
                     TAAHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPES
                     AWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEA
                     RRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQ
                     NNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASDNSK
                     LLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQIL
                     ETIQPIPAPVKKGQILGKIKIRQNGYTITEKEIVALENVEKRSRWQRLWMRLTGQ"
     gene            18474..20000
                     /gene="ilvA"
                     /locus_tag="WHR98_000511"
     CDS             18474..20000
                     /gene="ilvA"
                     /locus_tag="WHR98_000511"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HEZ2307231.1"
                     /translation="MNTPLPYSNYLIRILTASVYDVAVETPLEPARSLSVRLKNNILL
                     KREDLQPVFSFKIRGAYNKMSKLPKDALACGVIAASAGNHAQGVALSAQRLGCRAVIV
                     MPETTPKIKVDAVKSRGGEVVLRGVSYNDAYDYAMELAEKEGLTYIAPFDDPDVIAGQ
                     GTVGMEIVSQHPDPIRAVFVPIGGGGLAAGVAAFIKQVRPEIKVIGVQTNDSCCMKQS
                     VEAGEIVHLKDVGLFSDGTAVKVVGNETFRLCKELLDEIITVDTDAVCGAVKDIFDDT
                     RSITEPAGALALAGLKAYIAREGAENQTLIAVTSGANMNFHRLRHVSERSELGEGNEG
                     IFAVTIPEERGSFLKFVNILGNRNITEFNYRYGDDEKAHIFVGLQAAGPQDLAVIGSR
                     LDEAGLPNVDLTDDEIAKIHIRYMVGGRTDKVENERLVSFEFPERPGALARFLNHMQG
                     GWNITLFHYRNHGADYGRILVGIDVPPHDAAAFDGFLESLGYSYHEETQNAAYKLFLA
                     "
     gene            complement(20057..21130)
                     /locus_tag="WHR98_000512"
     CDS             complement(20057..21130)
                     /locus_tag="WHR98_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEZ2307232.1"
                     /translation="MSITIQNLNKHFGNFHALKNINLNVPTGKLVSLLGPSGCGKTTL
                     LRIIAGLENADGGNILFDGQDVTAKHVRERKVGFVFQHYALFRHMNVFDNVAFGLTVL
                     PKSERPSKEQICTKVEELLKLVQLSHLAKSYPHQLSGGQRQRIALARALAVEPKLLLL
                     DEPFGALDAKVRKELRTWLRDIHHNLGVTSILVTHDQEEALEVSDEIVVMNHGKIEQT
                     GSAEAIYRKPENAFVTEFLGETDAFEGRIEKGIWHYNGFAWKLDAHYKWQEQTAIGYI
                     RPHEWQIAAEHETPMICAEIEKVHAVGALTHILVKHGKQDVHITLAGSDAARYPIAEG
                     KELKLIPKQVYVFSQNELIEYSI"
BASE COUNT         4861 a         4986 c         5868 g         5450 t
ORIGIN      
        1 atgtttcctg ttgtttgaaa tgtcgggaat tatttgctga attgtttttt cacactgact
       61 ttggttttct tcttgaagcg gtttttctct tctttgcggt cttcgcgttt ctcaatacgg
      121 ttgctcaggc tgacacggcg cagcggtttt ttcttcggtt tgtcttccgc attttcatag
      181 gggttttctg aaacattgta ttgaattctg agcggcgtgc cttgcagatt gaaggctttg
      241 cggaatgttt gggtcaggta gcgcgtatag ctgtcggaaa ttgcgtgcag cgaattgccg
      301 tgtaccacaa tcaccggcgg attcatgccg ccttggtggg catagcgcat tttcggacgc
      361 accaagccag cacgcggcgg ttgctgacgc tcgatcgcgc tttgcaggac gcgcgtgatt
      421 ttcggtgttg gcatcttaat catcgccgcg ttgtaggcag cctgaatgct gtcgaacaat
      481 ccgtctatgc cgcgttcttt caatgcggaa ataaagtgga atttagcaaa atcaaggaaa
      541 tacagtttgc ggttgatatc gcgtttcact tgctcgcgac gttcttcgct gatgccgtcc
      601 catttattga ccgccaccac caaagcacgg cctgcctcca aagcgaaacc tgcaatcgtc
      661 gcatcttggt cggcgatgtc ctgctgcgcg tccaatacca aaacagcgac gtttgccgct
      721 tcaaccgcct gcatggcttt gataacggag aacttttcca ccgcttcatc gactttgccg
      781 cgacggcgca cgcctgcggt atcgatgatg gtaaacggtt tgcctttacg ttcaaaatca
      841 atgtggatgc tgtcgcgtgt cgtacctgcc atatcgaatg caatcacacg ctcttcgccg
      901 agaatggcgt taaccagcgt agatttgccg acgtttggac ggccgatgac ggcaaaaacg
      961 ggatgttttg catcggcttc ttcgacttcc ggctcgggga agttttctaa aatttcttca
     1021 atcaggtaat acacgccgtc gccgtgcgca ccggaaataa cataagggtc gcccaaagca
     1081 agttcgtaga actcggcggc aagcacggcc ctgttgccgc cttcgccttt gtttaccgcc
     1141 agataaacag ggcgcgggct ttggcgcaaa cggtcggcaa tgattttgtc ttgcggggtc
     1201 agaccggtgc ggccgtccac caaaaatacg acggcatcgg cttcatcgac agcctgcaag
     1261 gtttgttttg ccatttcgtg caaaatgccg ctgtccacaa ccggctcgaa acctccggta
     1321 tcgatgacca aataaggttt gctgccgact ttgccgtgtc cgtaatggcg gtcgcgcgtc
     1381 agaccgggca ggtcgtgtac gagcgcgtct ttggtgcgcg tcaaacggtt gaataaagta
     1441 gatttgccga cgttggggcg gccgacaagc gcgatggttg gtttcatgat tgggtctttc
     1501 tgtgtcaagt gccgttcggg agaactgaac acaagcaggt gtccgttgga cacggtaaat
     1561 aggttcttca cggcaagagg ccataaagag ggagggtaaa atgccgtctg ataaataatg
     1621 gacggcattt cagacggcat ttatttcagc gaatcaagtt tcatttgaac caattcgcga
     1681 ccgacagaat cttgaggcat tttttctaaa gcctgtccgt agttttttaa ggcttcctgg
     1741 ctttttccct gtgcggcata gacatcgcct ttggtttcca tcagcagggg ggcgaagtcc
     1801 gcttcaaccg gcgtgtcgag cgcggcaagt gcggcatcgt attttttttg ttgcaacaac
     1861 acaacgccca gacgctgtgc cgccaacgct tgaatcaggc tgtctttttg gttggacaac
     1921 acccatttca aatggccttc agcaacatcg taacgctgcg cgtcaaattc ggttgccgcc
     1981 accatcagcg tggcttgggc ggcggaaatg gaatgcgggt agctttgttg gagtttggtc
     2041 aattcggcat tgatttcgct ttgcggggct ttgttttgcg ccttttctac gatttctgcc
     2101 aatatggcag cggcttcctg attttgggaa gccgcacggt tttggtaaac cgtgtatccc
     2161 aagtagccga gcgccgccaa aatcagcacg gcaaacagcc atttgcccgt ggttttccaa
     2221 aaatatttaa agttgtctaa ctcttgttgt tcttcgagat gggctgccat ttatgcgttc
     2281 ttccattgtt gtaaagtatg ggttaaatcc tcggcggcga cagtttgctg accgtgtgcg
     2341 ccgttcatgt ctttgagcgt aaccgtaccg ttcgccagtt cgtcttgcgc gacaatcagg
     2401 gcaaagcgcg cgccgctgtt gtcggctttt ttcatttgcg ctttcaggct ttgatagccg
     2461 gaatgctgca ttacattgaa accttgcgcg cgcaaggctt gcgcgtattt catcacctgc
     2521 aagtccgccc tttcgccttg gtgcattgca tagacatcag gcgcagcgtt cacttccagc
     2581 gagccgtatt cgctcaccaa aagcagcagc cgttcgatgc ccatcgcaaa gccgatggac
     2641 ggcgcaggtt tgccgccaag ttcctcaatc aaaccatcgt aacggccgcc gccgcacaca
     2701 gttgcctgcg cgccgagttt gtcggtcgtc cactcaaaaa ccgtctgatt gtaataatcc
     2761 aaaccgcgaa ccaagcgcgg attttcaata tattggatac ccaaaccgtc caacatcgcc
     2821 ttgaagcgtg catagtggtt ttgcgaagcc tcgcccaaat aatccaccaa acgcggcgcg
     2881 gcgttgcaga tttcctgcaa atcagggttt ttcgtatcta aaacacgcaa aggattggtt
     2941 ttcagacggc gtttgctgtc ttcgtccaat ttatcttcat agcgtgtcaa atattcaacc
     3001 aacgccgcac ggtgtgccgc tcgctcctca cggttgccta agctgttgat ttccaaagtc
     3061 aggtattcgc ggatacccaa tttttcccat aagtcggcag acatcgcgat gatttccgca
     3121 tcaatatccg gaccttcaaa acccaaagct tcgataccga cctgatggaa ctgacgataa
     3181 cggccttttt gcggacgctc gcggcggaac atcggcccca tataccacag cttttgcggg
     3241 ctattgtaca gaaggttgtg ttcgaccacc gcacgcagac aagaagccgt accttcagga
     3301 cgcaggctca aactcaaaga atcgtttgaa tcggagaagg tgtacatttc cttgccgacc
     3361 acatcggttt cttcgccgat ggagcggaca aacaaaccgg tttgctcgac aatcggcgta
     3421 cggatttgct gataaccgta agcgcgtgtc cagcggccga ccgtatcttc aaacgcctgc
     3481 caaaacgcag ccgtcagttt gaaatctttt tgctcgacag gcagaaggtc gttcatgcct
     3541 ttgacggatt ggattttttg tgccatttca agtaagaatg cttaaatcaa attgcgggcg
     3601 attatagcgg atttttaagg gcttgtgagg atagagatgg tttgcggacg ggtaaaaatg
     3661 ccgtctgaaa cagttttcag acggcatttg acttactctg cacgtgcttg cctgatttgt
     3721 tcgactgcaa actccgtctg ccgcttggga tgatgtgtga aaaacaattt atttgaaatt
     3781 gtctcggctt ttttcggcac gaccgccaaa atcttacctg ccaaatttcc ctcacgggtt
     3841 tgccaagcct ccaaaaactg cgccctgctc atcgaaacat gacccagcga cgggtcggca
     3901 agcaaaaccg tattgccgtc tataccgcgc aataccgaga aatgatcatc cttgcggtat
     3961 ttcagataca cgatgacggg gattttcaac tgcgcgagct gctcgaaaga cagggcatag
     4021 cctttcgcct caaaacccaa atctggcata atgcgccgca tatcctcaaa cgacgcgcgc
     4081 atctgctcct tatccagctt tttcaacact tcttcttccg tcagcgtttg cccgtaaaaa
     4141 ttgttcaaaa gcgtcgccac cgaagccgcc ccgcaggaaa aatccaaatc ctgctttaca
     4201 atattgaaat cccgccgcgc tttccagctt tgtattttga ctttgccgta ggctatgggg
     4261 ttttcttccg caaagggaaa agaatgtgca caaagcggca gggcggcggc gaggagcagg
     4321 gaagcggcaa accgcctttt ttgttccatt aaaaccctcc taaaaggcta cccggaattt
     4381 ttaagcagcc ttttgattgg taaacgttac gacggaagcc ttagcctccc gattgcagta
     4441 tttcaattcc aagataaatg ccgcatagaa aagataaaat acttaaatgg ttttagcggc
     4501 ttaaatatct tatttaattt tattgattgt tttcccaata gtttccgcaa taaataataa
     4561 gaagtagaat aataaacaaa cagaacatga aaataaaaat aaatctttca tcatctcagt
     4621 aataaaattc caaagatttt ccttatttcc atcaataata aaaattatca gttcatgaat
     4681 aaagaatact acaaagaaaa tacttcctgc cgttagggat atttctaatc tgcttatttt
     4741 cccttcgcta tatttacctg ataaatagcc taaaaaagct acaatcaaat catccatttt
     4801 aaaaatttct gtaaaaacag ctaatgtcct taattcattt tgtccaagcc gtttgccatt
     4861 gcgagggcaa tcatagacag catcattacg gctgcggtga tttgtttttt cataacaaat
     4921 tcttagggag gagataatgt ttcatcaaag tcctcctgaa aggctgcctg aaatttccaa
     4981 gcagcctttt tgtttgctta ttaatcggat agtgtgacaa atataaggtg ggcggcaatc
     5041 attgccgtaa cggcagccat aactgtttta ttttcttcaa accaaagcga gttgagaaac
     5101 atgaacatca agaaatatga tggttcttca gttttgccgc tgctttcttg agttagaaga
     5161 taaaatatag atatggcggt tatgctgatt gctgttttta tatatttatt taccatatcg
     5221 ttgggcaaca cccgtaacca tacctgttgc caaagatcgg ttaaatcccc atacaacccc
     5281 tgccggacct gctgtcgccc ctccaaaagc tcccgcccct acggcaagag tgaatgctgt
     5341 gggagaaaat ctgcttccgc taagttgctg gttcatcata tatccgattc cgcctccgac
     5401 tcctccgata aatgcaccta ccggtcccca agccccctca gtctccttca tctccttttg
     5461 agaaagctcc gccaactgca tcggcgcatc tgcctgcgtg tggaacactt ggttttcaaa
     5521 tgtctgattg tccaagccgt ttgccattgc gggggcaatc atagacagca tcattacggc
     5581 tgcggtgatt tgttttttca taataactcc tttggattac aaggttggaa aatcaaaacc
     5641 tgcttaaaat gtatgctgta cgccaaattt cagttcggaa ctgctttgcc ctgaaacgtt
     5701 gaaacgtgcg gatgcgttta aagccgtggt tttggtgaaa ccgaaacctg cgccgaaatg
     5761 ggcgtaggtg gatgtgtttc ttgcggattc ttttttgccg tctatgcggt cgggctgcct
     5821 gcccaaccat tggatgcctc cggtcaggct gattctgtcg ttggcggcaa atgagatgtt
     5881 ggggttgagc agcaggtagt tgcccgattt gtagcggatg ccgtctgaaa gggttttgct
     5941 gccgttgatg cggtaggcgg cggtgaggga aaggacaatc ggatctatgg ctttgtaggt
     6001 ggtggcgccg atgagccagg attttcccga cgaggctttg ttgcgcgatt tttcgtaaac
     6061 cgtgctttca agaaagctga ttagggcggg atttttgtcg tctttgagga aggtatggct
     6121 gataccggcg gatatgtcag acatccgttt gttgcgggtt ttgccgttgc cgtcgagttt
     6181 gcgttcttcg tgccacagat agctgccgct gccgtaaatg tcggtattgc cggtcagtcc
     6241 gtagcgcaaa ccgagcgtgc cggcgagcat atcggtattg ctgccgtttt cttggatttc
     6301 ggtcggaatg gggataaacg aggttgcgcc ggtttgaatg taaaccggtg cggcaagtgc
     6361 ggcgcggctg ttttcgctat tcaggtaggt aagggaagtt tccagtttcc attttccctt
     6421 gtcggtcatt atgtcttcaa tcgtcaaggg caggtcggca taagcggata aaggcaggat
     6481 ggcgggcaag gcggacaaaa agatacgttt catatttcct attattgata ttaattctta
     6541 tttaagaata gtaatgaata tccgataatt ctgtctaaat aaatttttaa atcaaaaaaa
     6601 acgatatatt tgtttttatc aattatgttt tgatatgccg tctgaaaagt ttgtgaaaaa
     6661 cggttacaat ccgccgcatg aaaaaacgca ataatcctct tccgctgttg aacggtgtca
     6721 aacccagtta tttggtgctg ccgcatgaaa agcagtttta cgggctgccg ctgctgcatt
     6781 ttctgtgcat ccgctttcct tttgtgggcg cggatgattg gcgcaggcgg ttgaacagcg
     6841 gttttgtggt cggttcggat ggtgcggcgt tggacgaaca tactttgttc gagccgggta
     6901 aggtgatgtt ttattatcgg gaaaccagca gtgaggatga gccgcgtatt ccgtttgaag
     6961 aaaagatttt gcatattgat gagcatttga ttgtggtgga caagccgcat tttctgcccg
     7021 tcatccccag cgggcgtttt ttaagggaaa cgctgctcac acgtctgcgc ctgcgtcccg
     7081 aattgcagca tttgaatgtt gaagacatta cgccgctgca ccgcttggac aaggatacgg
     7141 caggcgtgat gctgctgtcg cacaatcctg ccacgcgggg ggcttatcag acgatgtttc
     7201 aaaacaaaac ggtatggaaa acgtatgagg cgcttgcccc gacaaggacg gatttgccgt
     7261 atccgcttga tgtggtttcg cgtttggtaa ggggtgaaaa attttttacg acgcaagagg
     7321 cggaaggcga atcaaatgca catacgacgg ttgaactaat tgaaaacagg ggggaattca
     7381 gcctttaccg ccttacgccg cataccggca agaaacacca gttgcgcgta cacatgatgg
     7441 gcttgggtat gccgttattg aatgacgcgc tctatcccgt gccgtctgaa gcgggcagcg
     7501 aggattatcg gaaacctttg aagctattgg caaaaaagat tgcgtttgca gatcctttgt
     7561 cgggtcggga aagggtgttt tgcagcggat tttgcctata atgagaggga acgcaaaccc
     7621 gtatcggcgg atgccgccga tacgggtttt acattatcga tgccgtctga aaggggtttt
     7681 atccgttcag gcatacgggc gcgaagcgga ggatggtgtc gcgcaggacg atgagtttgc
     7741 cgtgaaagaa atgcgtggaa ccggcgatgg taatgacggg caaatcttgc ggttccgccc
     7801 atttcagtgc tttcccgatt tcgacgactt cgtcttccgc gccgtgtatc atcagcgttt
     7861 tggcaacatt gggaacggcg gacggctcgg ggcggccggt atagtggcag actgccgcgc
     7921 cgatgagcag taacaggtcg ggtatgcgcg cttgtgcggc aaatgtggcg acatagccgc
     7981 cgaaggagaa gccggataag gcaaattcgg gggcttcggg atgttgggcg cgggcatagt
     8041 cgatgacggc gatacagtct tgcgtttcac cgtgtccgta atcgtgtgtg ccttcgctgc
     8101 cgcctacgcc gcgaaggttg ggcaggtagc agtggaagcc gagtttgctt aaggctttgg
     8161 cggcggtttg gatgactttg ttggtgttcg tcccgccttg gagggggttg gggtggttga
     8221 tgacggcaac accgcgtgcc ggtacttgtt cggacgggat atggatggtt tctaaaatgc
     8281 cggcagggcc gggtatgtgt atggtttcag gtttttgcat aatggtttcc tcttgatttt
     8341 ccgcatattc cgatgcagcc gcgaagatgg cggcttaaag gtggaaatgc ttgccgttgt
     8401 tggggttgga tgctttcagg tcggcgagca tgcggtggaa gtccaatccg taagcgttgc
     8461 tcagtttgtc ggcacgtttt ttgagtttgt ctatgttttg ctctttgggg ctgctttgga
     8521 aggccattac cgcgacattg ccgtggcttt cggcaggaag ttccaagacg cgcccttcaa
     8581 aaacgctcaa caaccgttcg atgaagcgtt ggtagcgttt gtcgccgctc caccagttgg
     8641 ttgcgaatat gccgtctgaa gagagtgcgt ttcggcagtc tcggaaaaac ggttcttcaa
     8701 ccagcgcatc gatgatttgt tcgccgtcga acccgtccac caaaatcaca tcggtgttgt
     8761 ggcggaagac tttgatatat tctgcaccgt ctgcttcgat aatttcaaat ttctcgccct
     8821 cgaaaggcaa ctcgaacagg ctgcgggcaa tggcgatgac ctgcgggttg atgtccacgg
     8881 cggtttggcg cgtgtcgggc aggtaggtgt ctatccagcg tgcaaacgaa ccgccgccca
     8941 agccgatttg ggtgatatgc tgcggaagag cgtcggtaaa cagcagccat cccatcatgg
     9001 cacggctgta agagagtacc agctcggacg ggtggtcgag gttcattgag ctttggatgg
     9061 tgtcgctgcc caagtgaagc gaacggatat tgccttcttc ggaaatgccg acttcgggaa
     9121 agctggattt tgcaggacgc aggcggcggt agggatgtct tgccatcggt gtgaacggtc
     9181 ggtttgaaag gcagatattt tatcagaatg ccgatggttg tcctgcttca aattaatttc
     9241 ttttcaaata aattacttat tcggatttgc cggggctttc ggataaattc cttgccaagg
     9301 tgcggcattg cctgcataat tcgctttctt tgccggtata gctcagttgg tagagcacct
     9361 gacttgtaat cagggggtcc cgagttcgac tcttggtgcc ggcaccattt ctgctgatgg
     9421 tgttgcaaaa catttcagta agccggtata gctcagttgg tagagcacct gacttgtaat
     9481 cagggggtcc cgagttcgac tcttggtgcc ggcaccagat ttgacagtcc gattgtgtaa
     9541 aacagtcggg ctgttttgca tttgcggcac ggtcggtggc agggctgcgg gcatttcact
     9601 ataatagccc gtttcaaact gaaaaggccg tctgaaaagg gcggggtaac aatatctgat
     9661 gattactgtg aacacactgc aaaaaatgaa ggcggcgggc gagaaaatcg ctatgctgac
     9721 cgcttacgaa tccagttttg ccgcgctgat ggacgatgcc ggcgtggaaa tgctgctggt
     9781 cggcgattct ttggggatgg cggttcaggg gcggaaatcg acgctgcccg tcagcctgcg
     9841 cgatatgtgt tatcacaccg aatgtgtagc acgcggtgca aaaaatgcga tgattgtcag
     9901 cgatttgccg tttggtgcat atcagcagag taaggagcag gcgtttgccg ccgctgccga
     9961 actgatggct gccggcgcgc atatggttaa actcgaaggc ggcgtgtgga tggcggaaac
    10021 gactgaattt ctgcaaatgc gcggtattcc ggtttgcgcg cacatcggtc tgacaccgca
    10081 atccgtgttt gcttttggcg gctacaaagt tcaggggcgc ggcggcaagg cgcaggcttt
    10141 gcttaacgat gccaaggcgc acgatgatgc gggggcggcg gttgtattga tggagtgtgt
    10201 tcctgcggaa ctggtaaaaa aggtaactga aactgttgcc tgtccgacca tcggcatcgg
    10261 cgcgggtgtc gattgcgacg ggcaggtttt ggtgatgcac gatatgctcg gcattttccc
    10321 gggtaagacg gcgaaattcg tcaaaaactt tatgcacggg caaagcagca ttcaggcggc
    10381 ggttcgcgcg tatgttgccg aagttaaagc caaaaccttc cctgctgcgg aacatatttt
    10441 tgcagactga acaaggtttg ctgccaatgc cgtctgaaag ccgtttcaga cggcattttg
    10501 ttttgccgtg cgcggcgcgt ataatcggcg cgttttgtcg ggcaggaagc ccgaaggata
    10561 aggattaccg ttatgcaaat catacatacc attcgagaac tgcgcgcgtg gcgtaaaaat
    10621 gcgggaaagg tggcatttgt gccgaccatg ggcaatctgc atgaagggca tcttgcgctt
    10681 gtgcgtgagg cgaaaaaacg cgcggacagt gtcgtggtca gcattttcgt caaccgcctg
    10741 caattcggtc agggcgagga tttcgacaaa tatccgcgta ctttgcaaca ggatgcggac
    10801 aagctggaag ccgagggtgt tgccgttgtt ttcgcgcccg atgagaaaga actctatccg
    10861 aacgtggagc aacggtataa cgtcgaaccg cccaacctgc aaaatgagtt gtgcggcaag
    10921 tttcgtccgg gacatttccg cggggtggcg acggtggtgt ccaagctgtt caatattgtc
    10981 gcgccggatg ttgcctgttt cggcaaaaaa gactatcagc agcttgccgt gattaaaggt
    11041 ttgaccgagg atttgaattt tgatgttgaa atagtgcctg tcgatacggg gcgcgcggaa
    11101 gacggtttgg cactctccag ccgcaaccag tatttgagtg cggcggaacg cgacgaagca
    11161 ccgcgcctgt actgcgaatt aaaggctgtt gccgaatcct tggcgcaggg cagtttggat
    11221 tatgcaggtt tggagcggca ggctgccgac catttgaccg ctgcgggctg ggtggtcgat
    11281 tatgtcgaaa tccgccgcgc cgatacgctc gaagtggcgc gggcgggaga taagaaactg
    11341 gtggtcttgg ccgccgcccg tctggggacg acgcgcctga ttgacaattt ggaaataaaa
    11401 ctcccttaaa ccgcaagcgt cgggaatgcc gtctgaagcg gatttgcgtt tcagacggca
    11461 tttatttttt tgaacggggt ttcgcaaatc tacaaacgat tctgcttgtg ataaagttac
    11521 gcctgattat atgccgtctg aaggttcgga cggctgtcgg ataaaggaag attatgttac
    11581 ccgcccgttt caccatttta tctgtgctcg cggcagccct gcttgccggg caggcgtatg
    11641 ccgccggcgc ggcggatgcg aagccgccga aggaagtcgg aaaggttttc agaaagcagc
    11701 agcgttacag cgaggaagaa atcaaaaacg aacgcgcacg gcttgcggca gtgggcgagc
    11761 gggttaatca gatatttacg ttgctgggag gggaaaccgc cttgcaaaag gggcaggcgg
    11821 gaacggctct ggcaacctat atgctgatgt tggaacgcac aaaatccccc gaagtcgccg
    11881 aacgcgcctt ggaaatggcc gtgtcgctga acgcgtttga acaggcggaa atgatttatc
    11941 agaaatggcg gcagattgag cctataccgg gtaaggcgca aaaacgggcg gggtggctgc
    12001 ggaacgtgct gagggaaaga ggaaatcagc atctggacgg actggaagaa gtgctggctc
    12061 aggcggacga aggacagaac cgcagggtgt ttttattgtt ggcacaagcc gccgtgcaac
    12121 aggacgggtt ggcgcaaaaa gcatcgaaag cggttcgccg cgcggcgttg aaatatgaac
    12181 atctgcccga agcggcggtt gccgatgtgg tgttcagcgt acagggacgc gaaaaggaaa
    12241 aggcaatcgg agctttgcag cgtttggcga agctcgatac ggaaatattg ccccccactt
    12301 taatgacgtt gcgtctgact gcacgcaaat atcccgaaat actcgacggc tttttcgagc
    12361 agacagacac ccaaaacctt tcggccgtct ggcaggaaat ggaaattatg aatctggttt
    12421 ccctgcacag gctggatgat gcctatgcgc gtttgaacgt gctgttggaa cgcaatccga
    12481 atgcagacct gtatattcag gcagcgatat tggcggcaaa ccgaaaagaa ggtgcttccg
    12541 ttatcgacgg ctacgccgaa aaggcatacg gcagggggac ggaggaacag cggagcaggg
    12601 cggcgctaac ggcggcgatg atgtatgccg accgcaggga ttacgccaaa gtcaggcagt
    12661 ggctgaaaaa agtatccgcg ccggaatacc tgttcgacaa aggtgtgctg gcggctgcgg
    12721 cggctgtcga gttggacggc ggcagggcgg ctttgcggca gatcggcagg gtgcggaaac
    12781 ttcccgaaca gcaggggcgg tattttacgg cagacaattt gtccaaaata cagatgctcg
    12841 ccctgtcgaa gctgcccgat aaacgggagg ctttgagggg gttggacaag attatcgaaa
    12901 aaccgcctgc cggcagtaat acagagttac aggcagaggc attggtacag cggtcagttg
    12961 tttacgatcg gcttggcaag cggaaaaaaa tgatttcaga tcttgaaagg gcgttcaggc
    13021 ttgcacccga taacgctcag attatgaata atctgggcta cagcctgctt tccgattcca
    13081 aacgtttgga cgaaggcttc gccctgcttc agacggcata ccaaatcaac ccggacgata
    13141 ccgctgtcaa cgacagcata ggctgggcgt attacctgaa aggcgacgcg gaaagcgcgc
    13201 tgccgtatct gcggtattcg tttgaaaacg accccgagcc cgaagttgcc gcccatttgg
    13261 gcgaagtgtt gtgggcattg ggcgaacgcg atcaggcggt tgacgtatgg acgcaggcgg
    13321 cacaccttac gggagacaag aaaatatggc gggaaacgct caaacgtcac ggcatcgcat
    13381 tgccccaacc ttcccgcaaa ccccggaaat aatgcaggtc catcctttca gacggcataa
    13441 ggtttgctgg gaagctgcgg cattcgggca aaccgcacgc agttcgcacg cgttttgcac
    13501 ggcacgccga acccgccggc cggcaggatg gcacccgtta aggaaattct gatgaaacac
    13561 accgtatccg catcggtcat cctgcttttg accgcttgtg cgcaattacc tcaaaataac
    13621 gaaaacctgt ggcagccgtc cgaacacatc agcagttttg cagcagaagg gcggttggca
    13681 gtgaaagcgg aagggaaagg ttcgtatgca aatttcgatt ggacatacca accgctcgtg
    13741 gaaaccatca atatcaatac ccctttgggc agtacgctcg ggcagttgtg tcaagacagg
    13801 gacggcgcat tggcagtgga cggcaaagga aatgtctatc aggcggaaag tgcggaagaa
    13861 ttgagcaggc agctggtcgg tttcaaactg ccaatccaat atctgcatat ctgggcagat
    13921 ggcaggcgtg tggcgggcgc gccttaccgc atcctgccgg acggcatatt ggaacaatac
    13981 ggttggactg tcggcagaac cgccgacagt ggggggcaag tccgaacgtt gcaactgaat
    14041 aacggaaatt tgaacatcag gctggttttc accgaaatcg gtattccgtc tgaaaccgaa
    14101 accccggaac gctgtgcggc gcgcacgaga taaggcggac agatgaatat tgcggacgga
    14161 cggcaggcgt ttcccgcacc tgcaaaactg aatctcgatt tgaggattac cggcaggcgg
    14221 gaagacggtt atcacaatat cgaaagcata ttctgcttga tagatttgca ggataccgta
    14281 tatttgaaac cgagggacga cggcaaaatc atcctgcaca atccggttga tggcatgccg
    14341 caggaagccg atttgagcta ccgtgccgca tcgttgctgc aaaaatatgc gcgcaacccc
    14401 gccggcgtgg aaatatggct ggacaaaaaa atcccgacag gggcgggttt gggcggcgga
    14461 agctcggatg cggcaaccgt tttgctggtg ttgaaccgtt ggtggcagtg ttcccgaacg
    14521 acgcagcagc tgattgactt gggcgcaact ttgggtgcgg acgtaccatt ttttattttc
    14581 ggaaaaaatg cttttgcaag cgggataggt gaaaaactga taggaatgga tattccgaaa
    14641 cagtggtatg tcatcgtcaa accgcccgtc cacgtttcca ctgcaaaaat tttcacacac
    14701 gaaggcttga cacgaaattc cgcctcaagc ataatgccga ctttccaaaa cctgcaaccg
    14761 tttagaaatg atatgcaggc agttgtattt aaagaatacc ctgaagtttg gaaagcctat
    14821 tccgaattgt cccgatatgg atttgcctta atgacaggtt ctggtgcgtg tgtattcacg
    14881 gcgtgtcaag atagggatag cgcatacaat atataccgac aagtttcagg tttgtacgag
    14941 gcatatttgg cagagggtct ttcaaaacat cctttgttgt ccgtataaac attgttgggg
    15001 agtcgtcaag cggttaagac actggatttt gattccagca tgcgaaggtt cgaatccttc
    15061 ctccccagcc aagccaaaca agttggggag tcgtcaagcg gttaagacac tggattttga
    15121 ttccagcatg cgaaggttcg aatccttcct ccccagccat atttttttgg ggagtcgtca
    15181 agcggttaag acactggatt ttgattccag catgcgaagg ttcgaatcct tcctccccag
    15241 ccagataaaa gcgtgtaagc ctgcttacac gcttttattt catagaaata aaaatattga
    15301 aatgcctttg tttgtgtcgg atgttgcagg tataatgtcg ggcttggtac aagcagaggg
    15361 aagcattgtg ttttctgagc ggaagttaaa cataaaatca ggtgagaata tggctgcgta
    15421 cgacagtttg atggtattta caggcaatgc caatcccgaa ttggcacaac gtgttgtcag
    15481 gcatttggac atttctttgg gcaatgcttc cgtatccaag ttttcagacg gcgaagttgc
    15541 cgtcgaactg ttggaaaacg tacgcgggcg cgatgttttc atccttcagc cgacctgtgc
    15601 gccgaccaat gacaacctga tggaaatcct gacgatggcg gatgcactga agcgtgcttc
    15661 ggcaggtcgt attaccacag ccattccgta tttcggctat gcgcgccaag accgccgtcc
    15721 gcgttccgtc cgcgttccga tttctgccaa actggtggca aatatgctgt attcggcagg
    15781 gatcgaccgt gttttgactg tcgatttgca tgccgaccag attcaaggtt tcttcgatat
    15841 tccagtggac aatatttatg ccaccccgat tctgttgaac gacatcaaac aacagcggat
    15901 tgaaaatctg accgtcgtca gcccggacat cggcggtgtc gtccgcgccc gcgccgtggc
    15961 aaaatccctg aatgccgact tggcaatcat cgacaaacgc cgcccgaaag ccaatgtggc
    16021 ggaagtcatg aacatcatcg gcgatattca aggcagaacc tgtctgattg tggacgatat
    16081 gattgacact gcaaatacgc tgtgcaaagc cgccgtcgct ctgaaagagc ggggggcgga
    16141 acgtgtcttg gcatatgcca gccacgccgt attctccgga gaggcggtca gccgtatcgc
    16201 ctcatccgaa atcgaccagg tggtcgtaac cgataccatt cctttgtctg aagcggctaa
    16261 aaactgcgac cgtatccgtc aggtaacgat tgccggtctg ttggccgaaa ccgtccgccg
    16321 catcagcaat gaagaatccg tctcatatct tttcaatgaa gaagtgatga caggcagtat
    16381 gttgctgcca taagcccgaa gccgtcttaa gctggtcgcg gccgatgacg gcgattttac
    16441 ctaacttgga gtatttaaca tgacttatga aattcaagcc tctgttcgtg aagcacaagg
    16501 cactggtgcg agccgccgcc tgcgtcgcga aggccaaatc cccggcattc tgtacggtga
    16561 aggtcaagag cctgttgcaa tcgctgtgga tcacaaaacc gtattctacg cattggaaaa
    16621 agaatctttc cataccgcgt tgattaaatt gtctctgaac ggcgaaacca aagacgttat
    16681 cgtccgtgat ttccaaatgc acccgttccg ccgcgaagtt caacacatcg acttccaagc
    16741 tgtgaaagca gaccaacccg tacgcatccg cgttcccctg cacatcgtta acgctgaaaa
    16801 ttcccaagcg gtcaaactgc aaggcggccg tgtatctctg ttgaacacga ctgttgaagt
    16861 gcttgcattg cctgccaata tccctgcttt cttggatttg gattgtgccg aagtggttgc
    16921 cggcgacatt ctgcatctgt ccgacatcaa actgcctgaa ggtgtagaaa gcgtttccct
    16981 gaaacgtaac gaaaatctgg ctgttgccac cgttaccggt aaaaaacgct aattgatttc
    17041 agcagcaggg cggcgcgtat gcaatacgta ccgccctgtt gttttatgcc gtctgaaccg
    17101 tgtttcagac ggcatttctt tatttgttgg aaaaacggga tatttgaaac ggcagattac
    17161 tgtcccgtca gacgcatcca aagcctttgc caccggcttc ttttttctac attttccagt
    17221 gcgacaattt ctttttcggt aatggtgtat ccgttttgcc tgattttgat ttttcctaaa
    17281 atctgtccct tttttaccgg ggcgggaatc ggctgtatgg tttctagaat ttgttctgcc
    17341 attttcgctt ccttatgtgg cagagtgatg taggcttctt tgaggaagcc tgcgcggacg
    17401 gtttttttgc tgcctccgga aatttggatt tgggcaacgg ttttgccttt cggatatatt
    17461 ttgggcgtat cgaaggcctg caatgcccag ttcagcagct tgctgttgtc tgatgcgcgt
    17521 gtttccgccg attccgaacc caatgtgatg acaaggatgt gcctgccgtt gccggagtat
    17581 gacacggcaa ggttgtagcc gccgctttct gtgtgtccgg ctttcagacc gtttacattg
    17641 ttgtccctat ataaaaggat attgcggttg ttttgctcta tatttttgaa tttgaaagat
    17701 ttgatggaaa acagcgggta atattccgga aagtcgcgca tcaatgcttc agacagctgg
    17761 gcgaggtctt tggcggtgga aacctgtcct tctctactca agcctgtcgg gtttttgaat
    17821 acagtgttct tcatgcccaa gcgtcgggct tctttgttca tttgttgcac aaaattttca
    17881 atcgagccgt tgcccagccg gccggcaagg gttagggcgg catcgtttgc ggatagtgca
    17941 atcatgcctt ttaagagttt gtcggtgctg accgtatcgc cgggacgtac aaacattctg
    18001 cttccttctg aagcccatgc ggattcgggt atttttaagt tttcttcaga ttggatattt
    18061 cccgatttca tgtttttgaa aaccaaatat gcggtcatca gttgggttag tgccgccggt
    18121 tcgacagggg tattgatgtt tttggcggat aaagtctgtc tgctttgaag gtcgataacg
    18181 atgtgtgccg ctgtgagggt ttcgggtgtt tggaacgtgg gggcggcgtg taccgccggt
    18241 ttgttgggcg cgggcgatgc ggccgttgcg tgagaaacgc ctaagatgat ggaaagcagg
    18301 acgggcagga ttttatgtgc tgtcatgaaa tattctaatt gtgtgcgtgt ttcagtctgc
    18361 cgattatacg cttagggtgt ctgatcgggc ggatttttct tgctttcgcg ccgtcttggg
    18421 cgtatggttt tgggttttgc gattttaata aaccgattat cccatattga attatgaaca
    18481 cgccccttcc ttattccaat tacctcatcc gcatcctgac ggcatctgtc tatgatgtcg
    18541 cggtcgaaac gcctttggaa ccggcacgca gcctttctgt acgtttgaaa aacaacatcc
    18601 ttttgaaacg cgaagatttg cagccggttt tttcgttcaa aatacgcggc gcgtacaaca
    18661 aaatgtccaa gttgccgaaa gatgcgctcg cttgcggcgt gattgcggca agcgcgggca
    18721 atcatgctca aggcgtggca ttgtccgcac agcgtttggg ctgccgtgcc gttatcgtta
    18781 tgccggagac tacgccgaaa atcaaagtgg atgcggttaa gagccgtggc ggcgaggtgg
    18841 ttttgcgggg cgtttcatac aacgatgcct acgattatgc gatggagttg gcggaaaaag
    18901 aagggttaac ctatatcgcg ccgtttgatg atcctgatgt gattgcggga caggggacgg
    18961 tggggatgga aattgtcagc cagcatcccg atccaatccg cgccgtattc gtaccgatag
    19021 gcggtggcgg tttggcggcg ggcgtggcgg catttatcaa gcaggtccgt cccgaaatca
    19081 aagttatcgg cgttcagacc aacgattcct gctgtatgaa gcagtcggtc gaagcgggtg
    19141 aaatcgtcca tttgaaagat gtcgggctgt tttcagacgg cacggcggtc aaagtcgtcg
    19201 gaaacgaaac cttccgtctc tgcaaagaac ttttggatga aatcattaca gtcgataccg
    19261 atgcggtttg cggcgcggtc aaggatattt tcgatgacac gcgcagcatt accgagccgg
    19321 cgggcgcgtt ggcgttggcg ggtctgaaag cctatatcgc ccgagaaggc gcggaaaacc
    19381 aaaccctgat tgccgttacc agcggtgcga atatgaattt tcaccgtttg cgccacgttt
    19441 cggaacggag cgaattgggc gagggcaacg aaggtatttt tgccgttacc atccctgaag
    19501 aacgcggcag cttccttaag tttgtcaata tattgggaaa taggaatatt accgagttca
    19561 actaccgcta cggggacgat gaaaaagcgc atatctttgt cggacttcaa gcggcaggcc
    19621 cgcaggattt ggcggttatc ggcagccggt tggatgaggc gggattgccc aatgtcgacc
    19681 tgaccgatga tgagattgcc aaaatccata tccgctatat ggtcggaggg cggacggaca
    19741 aagtagaaaa cgagcgtctg gtcagttttg agtttccgga gcgtccgggg gcgttggcgc
    19801 gttttttgaa ccatatgcag ggcggttgga acattacgct cttccattac cgcaaccacg
    19861 gtgcggatta cgggcggatt ttggtcggta tcgatgtgcc gccgcacgat gccgccgcat
    19921 ttgacggttt cttggaaagt ctgggataca gctatcacga ggaaacgcaa aatgccgcgt
    19981 acaagctgtt tcttgcctga cgcttgaaag cacaatgccg tctgaaagcc tttcagacgg
    20041 cattgcgctt tcatggttaa atcgaatatt caatcagttc gttttgagag aagacataaa
    20101 cctgtttcgg aatcagcttc aattctttgc cttcggcgat tgggtaacgc gcggcatcgc
    20161 tgccagccag cgtgatatgc acgtcttgtt tgccgtgttt caccaaaata tgcgtcaatg
    20221 ccccgacggc gtggactttt tcgatttcgg cacaaatcat cggtgtttcg tgttcggcgg
    20281 cgatctgcca ttcgtgcggg cggatatagc cgatggcggt ttgctcctgc catttgtagt
    20341 gcgcgtccaa tttccacgcg aagccgttgt agtgccagat gcctttttcg atgcgtcctt
    20401 caaaagcgtc ggtttcaccg aggaactcgg taacgaaggc gttttcgggt ttgcggtaaa
    20461 tggcttcggc gctgccggtt tgttcgattt tgccgtggtt catcacgacg atttcgtcgg
    20521 aaacttcgag ggcttcttct tggtcgtgcg taaccagaat gctggttaca cccaggttgt
    20581 gatggatgtc gcgcagccag gtgcgtaatt ctttgcgtac tttggcgtcc aacgcgccga
    20641 agggttcgtc caaaagcagg agtttcggtt cgaccgcaag cgcacgggcg agggcgatgc
    20701 gctggcgttg cccgccggag agttggtgcg gataggattt tgccaaatgc gagagttgta
    20761 cgagtttcag caattcttcg actttagtgc agatttgttc tttggacggg cgttcggact
    20821 tgggcaatac ggtcaaaccg aaagcgacgt tgtcaaacac gttcatatgg cggaaaaggg
    20881 cgtagtgttg gaacacgaag ccgactttgc gctcgcgcac atgtttggcg gttacgtctt
    20941 gcccgtcaaa caggatattg ccgccgtcgg cgttttccag tccggcgata atgcgtaaaa
    21001 gtgtggtttt gccgcagccg gacgggccga gcagggaaac gagtttgccg gtggggacgt
    21061 tgaggttgat gtttttcagc gcgtgaaaat tgccgaagtg tttgtttaag ttttggatgg
    21121 tgatactcat actgcgttcc tttcggcggc ggcgagtttt ttgtc
//
LOCUS       DAWGNT010000020        21120 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.020, whole genome shotgun sequence.
ACCESSION   DAWGNT010000020 DAWGNT010000000
VERSION     DAWGNT010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 21120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21120
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.020"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(214..981)
                     /locus_tag="WHR98_000513"
     CDS             complement(214..981)
                     /locus_tag="WHR98_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HEZ2307233.1"
                     /translation="MQTRILSAVLLAFSTAAFAGGAFTLQFDNPSEDGGFTQNQLLSA
                     PYGFGCSGGNASPALSWKNPPAGTKSFVLTVYDKDAPTGLGWMHRVVADIPADVHRRN
                     ATSLQLSRCANIADRTGLDALGGRRHSRRCPPPQRGLAAIKPLRQHRRRPVRSHIGGN
                     QFADLPHQVDAFVHGKTDAVMLQPRQHAAKRDLRRIVRHFFIRQHRRRIIKRRAHPPG
                     VRQLHRIAHCLRRPVLCGKPFYGFLFESNPLRLIEAV"
     gene            1292..2044
                     /locus_tag="WHR98_000514"
     CDS             1292..2044
                     /locus_tag="WHR98_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEZ2307234.1"
                     /translation="MITLPSLNNLPSKWDEIRYWLETQVFECEVMPYPNLTEHEAKQF
                     ERDFWDNIGCAPEEYVRIRRAIRLLEARYPDSLNELVCAAIATPLGEMLAVFGNKGLC
                     LLEFVGQKHLEQEIAAVQKALRGRFVFREDERTQLLRQELDLYFKGRLKTFATPLEQI
                     GTEFQKQAWDALLAIPYGETRSYKEQAQRLGNPKAVRAVAAANGQNKVSILIPCHRVI
                     GSDGKLTGYAGGLNRKQFLLALERGEVQTALF"
     gene            2235..2310
                     /locus_tag="WHR98_000515"
     tRNA            2235..2310
                     /locus_tag="WHR98_000515"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2268..2270,aa:Asn,seq:gtt)
     gene            2441..3451
                     /gene="waaF"
                     /locus_tag="WHR98_000516"
     CDS             2441..3451
                     /gene="waaF"
                     /locus_tag="WHR98_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEZ2307235.1"
                     /translation="MSIKILIISPSWIGDCVMTQPLFRRLKELHPGCTIDVFAPKWSM
                     AVFERMPEVNEILENPFGHGALELKRRWRVGRDLGRRGYDQVIVLPGSLKSAVIALAT
                     GIGKRTGYVGESRYFLLNDIRRLDKERLPLMVDRYTALAHPSQEDFDGHSGFPEFSID
                     ERRREISVETFGLDIGKPVLAFCPGAEFGPAKRWPTKHFAELGKHYSAAGWQVWLFGS
                     QKDDEIAEEINRLSDGICVNLCGKTDLSQAMDLLSLADTVVCNDSGLMHLAAALGRKV
                     VAVYGSSSPTHTPPLSDRAKIVSLHLECSPCFKRECPLGHTDCLNRLYPEKIVQAVEE
                     AV"
     gene            3506..3952
                     /gene="smpB"
                     /locus_tag="WHR98_000517"
     CDS             3506..3952
                     /gene="smpB"
                     /locus_tag="WHR98_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEZ2307236.1"
                     /translation="MAIANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESY
                     IYWKKDAFYLVGCHITALPTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVP
                     LDLHFSRGKIKMEIGLAKGKKQHDKRQSMKEADWKREKQRLIKHTR"
     gene            5026..6585
                     /locus_tag="WHR98_000518"
     CDS             5026..6585
                     /locus_tag="WHR98_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_180374913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HEZ2307237.1"
                     /translation="MLSLPFPGLKVSENSHVIGQIIHLYELKLEDSLWEPRWDSDVSY
                     LRLYNSHIRFNTKNESLVVGESRIRPTPDNASSPEQYFKRAYGKDIGYQSGSPVTTCD
                     YSGCRDGYSGNSSIHFAYDLSEREADKPVLTLKSKVRGKTAIVFEEKALNNLKNLTYR
                     QLIKTETDVEPDAFFLLEEYKKGRYRLFLQQCPNGFCIGVEKLAIPIPTHLVASYAQQ
                     AQAANTLFALRLNDKNSDIFDRTLPRKGLWLRLISGHLSQDVQGKTAPVEGNRKGIQL
                     GGDVFSLQNHNYQLSVGLMGGQAEQRSTFRNPDTDNLTTGNVKGFGAGVYATWHQLQD
                     KQTGAYADSWVQYQRFRHRINTEDGTERFTSKGITASIEAGYNALLAEHVTKKGNSLR
                     VYLQPQAQLTYLGVNGKFSDSENAHVNLLGSRQLQSRVGVQAKAQFAFTNGVTFQPFV
                     SVNSIYQQKPFGVEMDGERRVINNKTAIESQLGVAVKIKSHLTLQATFNRQTGKHHQT
                     KQGALNLQWTF"
     gene            complement(6766..8133)
                     /locus_tag="WHR98_000519"
     CDS             complement(6766..8133)
                     /locus_tag="WHR98_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEZ2307238.1"
                     /translation="MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRS
                     VESVQTIMRFCYEHRIPVTPQGGNTGLCGAAVSENGVLLNLSKLNRIRSINLSDNCIT
                     VEAGSVLQTVQQAAAASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLVIG
                     LEVVLPNGELVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPLDKATAW
                     VGIPDIESAVRLLTETQAHFAERLCSFELIGRFAAELSSEFSKFPLPTHSEWHILLEL
                     TDSLPDSNLDDRLVEFLYKKGFTDSVLAQSEQERIHMWALRENISASQRKLGTSIKHD
                     IAIPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPEILSNEVYRYEN
                     DINDAVYRNVLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNP
                     GKLLP"
     gene            complement(8243..8479)
                     /locus_tag="WHR98_000520"
     CDS             complement(8243..8479)
                     /locus_tag="WHR98_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307239.1"
                     /translation="MKKSLFAAALLSLVLAACGGEKAAEAPATEAPAAEAPATEAPAA
                     EAPAAEAPAAEAPAAEAAATEAPAAEAPAAEAAK"
     gene            8952..9434
                     /locus_tag="WHR98_000521"
     CDS             8952..9434
                     /locus_tag="WHR98_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEZ2307240.1"
                     /translation="MAIVKNSVVSLHYEMYDANNQLLDKTEEPIAYLHGGYDGIFPLV
                     EEALHGKDAGDTVDVALSPDDAFGEQDPELVRIEDVGVFPVEVEVGMMFEADDPETGD
                     VVVYRVTNVADGKAVVDGNHPLAGMKIRFKATVESVRDASDEEIAHGHVHGPHGHHHH
                     "
     gene            9521..10333
                     /gene="hpnC"
                     /locus_tag="WHR98_000522"
     CDS             9521..10333
                     /gene="hpnC"
                     /locus_tag="WHR98_000522"
                     /EC_number="2.5.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="squalene synthase HpnC"
                     /protein_id="HEZ2307241.1"
                     /translation="MSVGHYENFPVGSLILPRRLRKPVHAVYAFARTADDMADEGSMP
                     SEARLAGLEGLRRELDVLASGGRSAHPLIARLDAEAVVPFGLDLQPFYDLLSAFSQDV
                     VKTRYAHFGELADYCRRSANPVGRIMLALYGKTDAVCVAQSDGICTALQLVNFWQDVA
                     VDWQKGRVYIPQDDLLKFGVSEEQIAAGRADAAFQRLMAYECRRAFRMLKAGSPLARE
                     LKGRIGLELRMIVLGAQLILQKLDACRYDVFAQRPVLDKKDWLIMLKKALWK"
     gene            complement(10406..10876)
                     /locus_tag="WHR98_000523"
     CDS             complement(10406..10876)
                     /locus_tag="WHR98_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1841 family protein"
                     /protein_id="HEZ2307242.1"
                     /translation="MYDVNTHDVRRFFARVWQQRLNPLQLSALEQKALRIVEAHPEYH
                     RYLERIEDHLDTDWLPENGESNPFLHMSLHLSVQEQAGIDQPHGIRAIHDTLCAKRGW
                     LEAEHEMMEALAETLWTAQRYGTGLDVNFYMTRLRKLIGLGAENQARLNPHEIA"
     gene            10967..12808
                     /locus_tag="WHR98_000524"
     CDS             10967..12808
                     /locus_tag="WHR98_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEZ2307243.1"
                     /translation="MQTNYLSETDSIMKKLICLFAVFLMLCGRAFALDANDLLPPEKA
                     FVPELAVADDGVNVRFRIADGYYMYQAKIVGKTDPADLLGQPSFSKGEEKEDEFFGRQ
                     TVYHHEAQVAFPYAKAVGEPYKLVLTYQGCAEAGVCYPPVDTEFDISGNGTYHPQTDE
                     PASAKDRFLQPSSQNGSGALPPPKGDEGGDSRFKLSWDTLNANLLAFFLAGLGLSFTA
                     CMYPLLPIVSSIVVGDKKAGKARAFVLSVVYVQGLALTYTLVGIVAGLTGALLTVWLQ
                     QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLSGGKIVSVFIMGILSA
                     LIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPLIAIGTFGGHILPRAGD
                     WMNAVKYAFGFILLAVAVYLATPHLPYYLVVALYTLLMLVPACMLLVNGRRQKRRPKA
                     VAFALGGILLIGGAWFGWQGANGKTTALHHFLTLNPPAEAGKSSEHGKMFADTAALKA
                     AMDTALKEHPDKPVVLDFYADWCISCKEMAAYTLNQPEVHQAVDMERFFQIDVTANTP
                     EHQALLKEYGLFGPPGVFVVRSDGSRSEPLLGFVKADKFIEWYEQNR"
     gene            complement(13219..14415)
                     /locus_tag="WHR98_000525"
     CDS             complement(13219..14415)
                     /locus_tag="WHR98_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEZ2307244.1"
                     /translation="MSQKLILVLNCGSSSLKGAVLDNGSGEVLLSCLAEKLNLPDAYI
                     TFKVNGEKHKVDLSAHPDHTGAVEALMEELKAHGLDSRIGAIGHRVVSGGELYSESIL
                     VDDEVIAGIEKCIPLAPLHNPAHLLGLRAAQSIFKGLPNVVVFDTSFHQTMPEVAYKY
                     AVPQELYEKYGLRRYGAHGTSYRFVADETARFLGKDKKDLRMVIAHLGNGASITAVAN
                     GESRDTSMGLTPLEGLVMGTRSGDIDPSVFGFLAENANMTIAQITEMLNKKSGLLGIS
                     GLSNDCRTIEEEAAKGHKGAKLALDMFIYRLAKYIGSMAVAAGGLDALVFTGGIGENS
                     DIIRERVIGYLGFLGLNIDQEANLKARFGNAGVITTADSKAVAVVIPTNEELMIAHDT
                     ARLSGL"
     gene            14766..15065
                     /locus_tag="WHR98_000526"
     CDS             14766..15065
                     /locus_tag="WHR98_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307245.1"
                     /translation="MHYFSIHDQSGRHIGFFILLADDESEARPQSGRFAVKLEDGAGN
                     HVLSPFAQTEIPQYWRVVKDRIELFFDEAPVGTLRNEYLTVSGQTFVLNDLTGNI"
     gene            15065..15250
                     /gene="ccoS"
                     /locus_tag="WHR98_000527"
     CDS             15065..15250
                     /gene="ccoS"
                     /locus_tag="WHR98_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEZ2307246.1"
                     /translation="MESMFILVPISIILAFVIGWFFWWSGKNGQFDDLEGPAHRILMD
                     DDSTSKLIEKEKENDVR"
     gene            15240..16550
                     /locus_tag="WHR98_000528"
     CDS             15240..16550
                     /locus_tag="WHR98_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEZ2307247.1"
                     /translation="MYAKKGGLGLVKSRRFAPLFATQFLGAFNDNVFKTALFVMIGFY
                     GLGQNGFLPAGQMLNLGALLFILPYFLFSSLSGQLGNKFDKAVLARWVKVLEMIIMAV
                     AAYGFYIRSAPLLLACLFCMGAQSTLFGPLKYAILPDYLDDKELMMGNSLIESGTFVA
                     ILFGQILGTAVAGVPPYIVGILVLLVAVGGTVGSLFMPSVPAKAADTQIEWNIVRGTK
                     SLLRETVRHKPVFTAIIGISWFWFVGAVYTTQLPTFTQIHLGGNDNVFNLMLALFSIG
                     IAAGSVLCAKFSRERLRLAWVTVGALGLTVCGLVLVWLTHGHRFEGLNGIFWFLSQGW
                     AYPVMAVMTLIGFFGGFFSVPLYTWLQTASSETFRARAVAANNIVNGIFMVSAAVLSA
                     VLLFLFDSISLLYLIVALGNIPLSVFLIKRERRFLGAAAIRKKP"
     gene            16706..17440
                     /gene="dnaQ"
                     /locus_tag="WHR98_000529"
     CDS             16706..17440
                     /gene="dnaQ"
                     /locus_tag="WHR98_000529"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HEZ2307248.1"
                     /translation="MTTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLY
                     VHPERDMPEEAARVHGLTIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFL
                     NMEFRRMGLPTVEELGCTVTDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALI
                     DCELLGEVYLAMTRRQFDLMGEAAEEKMETKPVVHTETKRSGKLKVIRADENELAEHG
                     QYLDGLGEACIWRKEAVPSENGGTDA"
     gene            17437..18126
                     /locus_tag="WHR98_000530"
     CDS             17437..18126
                     /locus_tag="WHR98_000530"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEZ2307249.1"
                     /translation="MKRKNIALIPAAGIGARFGADKPKQYVEIGSKTVLEHTIGIFER
                     HEAVDLTVVVVSPEDTFADKVQTAFPQVRVWKNGGQTRAETVRNGAEKLLEIGLASAD
                     DNILVHDAVRCCLPSEALTRLIEQAGNAAEGGILAIPIADTLKCADGGNISATVERTS
                     LWQAQTPQLFRAGLLHRALAAENLDGITDEASAVEKLGVRPLLIQGDVRNLKLTQPQD
                     AYIVRLLLDAV"
     gene            18158..18640
                     /locus_tag="WHR98_000531"
     CDS             18158..18640
                     /locus_tag="WHR98_000531"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HEZ2307250.1"
                     /translation="MTNIRIGQGYDVHQLTEGRKLILGGVEIPFEKGLLGHSDADALL
                     HAVTDALLGAAGLGDIGSHFPDTAAEFKDADSRVLLRAAYQSVQAQGWQAVNVDTTVI
                     AQKPKLAPHIPQMRANIAADLGIDISCVNIKGKTNEKLGYLGRMEGIEAQAAVLLVRI
                     "
     gene            18717..19388
                     /gene="rpiA"
                     /locus_tag="WHR98_000532"
     CDS             18717..19388
                     /gene="rpiA"
                     /locus_tag="WHR98_000532"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HEZ2307251.1"
                     /translation="MTTQDELKRIAAEKAVEFVPENEYIGIGTGSTINFFIEALGKSG
                     KKIKGAVSTSKKSSELLAQYDIPVVSLNEVSGLAVYIDGADEVNHALQMIKGGGGAHL
                     NEKIVASASEKFVCIADESKYVSRLGKFPLPVEVVESARSLVSRKLLAMGGQPELRIG
                     YTTFYGNQIVDVHGLNIDQPLTMEDEINKITGVLENGIFARDAADVLILGTEEGAKVI
                     YPCQG"
     gene            19457..20128
                     /locus_tag="WHR98_000533"
     CDS             19457..20128
                     /locus_tag="WHR98_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEZ2307252.1"
                     /translation="MQIKKIMKWLPVALSLLGALGYTGYGSEAVRTAVAVLDVLGAAG
                     DAGSDAPARRRASAKSGHRYTGTVSKVYDGDTLHVIDGDGAKHKIRMAYIDAPEMKQA
                     YGTRSRDNLRAAAEGRKVSVRVFDTDRYQREVAQVSVGKTDLNLMQVQDGAAWHYKSY
                     AKEQQDKADFADYADAQIQAERERKGLWKAKNPQAPWAYRRAGRSGGGNKDWMDAVGE
                     WLGIW"
     gene            20307..21053
                     /locus_tag="WHR98_000534"
     CDS             20307..21053
                     /locus_tag="WHR98_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEZ2307253.1"
                     /translation="MDFRFDIIYEYRWMFLYGALTTLGLTVVATAGGSVLGLLLALAR
                     LIHLEKAGAPMRVLAWALRKVSLLYVTLFRGTPLFVQIVIWAYVWFPFFVHPSDGILV
                     SGEAAIALRRGYGPLIAGSLALIANSGAYICEIFRAGIQSIDKGQMEAARSLGLTYPQ
                     AMRYVILPQALRRMLPPLASEFITLLKDSSLLSVIAVAELAYVQNTITGRYSVYEEPL
                     YTVALIYLLMTTFLGWIFLRLEKRYNPQHR"
BASE COUNT         4969 a         4832 c         6066 g         5253 t
ORIGIN      
        1 tttcatacgc gcgaacgatt gggtgctttg ggcggcatcg tgcaacatca taccgccttg
       61 taccgcagcg tggcggtata tgaaccagct gtgcttatcg tgcggcgcgg aagcaagaag
      121 ctgcggtggg cgaggcgcga attgaggatt gcggcgggtg aggcggttgc gttggcaggc
      181 ggacagacgt ttgacgttat taatattccc gattcagacg gcctctatca ggcgcaatgg
      241 attgctttcg aacaggaagc catagaaagg tttgccgcac aatacgggac ggcgcaggca
      301 gtgtgcgatg cggtgaagct gccgcacccc gggcggatgg gcgcggcgtt tgattatgcg
      361 gcggcggtgc tgacggatga agaagtgccg cacaatgcgg cggaggtcgc gctttgcggc
      421 gtgttggcgt ggttgcagca tgacggcatc ggttttgccg tgtacgaagg cgtcaacctg
      481 atgcggcaaa tccgcaaact gattaccgcc gatatggctg cggactggtc gtcggcgatg
      541 ttggcgcagc ggcttaattg cagcgaggcc gcgttgcggc ggcggacatc ggcgggaatg
      601 tcggcgacca cccagtgcat ccagcccagt ccggtcggcg atgttggcgc agcggcttaa
      661 ttgcagcgag gtcgcgttgc ggcggtggac atcggcggga atgtcggcga ccacccggtg
      721 catccagccc agtccggtcg gcgcgtcttt atcgtaaacg gtcaggacga aactttttgt
      781 cccggcgggc ggatttttcc acgacagcgc gggcgaagca ttgccgcccg aacagccaaa
      841 tccgtaaggc gcgctcaaaa gctggttttg cgtgaagccg ccgtcttcgg acgggttgtc
      901 gaattgcagc gtgaatgcgc ccccggcaaa ggcagcggtt gaaaaagcca gcagtacggc
      961 ggagagaatg cgggtttgca tagatgattc ctttgcttga tgaataagtg gattcattat
     1021 aggctgtcaa cggcggcagg aatgtgccga aacggttgga tgatgtgcca gaatgcgcaa
     1081 atgcaaaaat cgtggtttca gacgagcctt tgcaggtcgt ctgaagtctt taattccttt
     1141 ccctgaggct ttggaaatat cgcatattta ggcattgccg caacctaacc ctcaagattt
     1201 acgtcgtagc ccgttcctgc atcagcgtgc gggaatggcg aaaattggga attttgccgt
     1261 caaatccatg atagagatac ggagcaaacg aatgattacc ctgccttcct taaacaatct
     1321 gccgtcaaaa tgggatgaaa tccgctattg gctcgaaacc caagtttttg agtgcgaagt
     1381 tatgccgtat cccaatctga cggaacacga agccaagcag ttcgagcggg atttttggga
     1441 caatatcggc tgcgcgcctg aagaatatgt ccgcatccgc cgcgccatcc gtttgttgga
     1501 agcgcgttat cccgacagct tgaacgagct ggtgtgtgcc gccattgcca cgcctttggg
     1561 cgagatgctg gcggtgttcg gaaataaggg attgtgtctg ctggagtttg tcggacagaa
     1621 gcatttggaa caggaaattg ccgccgtcca aaaagccttg cgcggacggt ttgtgtttcg
     1681 ggaggatgag cggacgcaac ttttgcggca ggaattggac ttatacttca agggtcgtct
     1741 gaaaaccttt gccacgcctt tggagcagat tggcaccgag tttcaaaagc aggcatggga
     1801 cgcgctcttg gcgattcctt acggcgaaac gcgcagctac aaggagcagg cgcagcgttt
     1861 gggcaacccc aaagccgtcc gcgccgttgc cgccgccaac gggcagaaca aagtatctat
     1921 cctgattccc tgccaccgcg tcatcggcag cgacggcaaa ctgaccggct acgcgggcgg
     1981 gttgaaccgc aaacagtttt tactggcttt ggaacgcggc gaagttcaga cggcattgtt
     2041 ttaagcgggg gagggcagaa cggctcatcg ggcttaaata tggtgtgatg acggctgtgg
     2101 aaattcatac aacggcaatc cttttaaggc atcggtctta atgtctttct gattcatatg
     2161 cttgtcgttt tgtcgcccat ttttccaaaa ttaaggattg acacattttt tccggacgct
     2221 ataatacgcc ccattccccg atagctcagt cggtagagcg acggactgtt aatccgcagg
     2281 tccctggttc gagcccaggt cggggagcca gaattttgaa gcccgaactt gaatgttcgg
     2341 gctttttcat atttgcacgt ccggcgttcg gaatgcggca agataggttt tccaacggtt
     2401 tcgcggtaaa attctgcctg tctgatttcg gtttcttgtt atgtccatca aaatcctgat
     2461 tatttctccc agttggatag gcgactgcgt gatgacccag cccttgttcc gccgtttgaa
     2521 ggaacttcat cccggttgca cgattgatgt gttcgcaccg aagtggtcga tggcggtgtt
     2581 tgagcgtatg ccggaagtga atgagattct tgaaaatccg ttcggacacg gtgcgttgga
     2641 gttgaaacgc cgttggcggg tcggcaggga tttggggcgg cgcggatacg atcaggttat
     2701 tgtgttgccg ggttctttga agtcggcagt catcgcgctg gcaacgggca tcggaaaaag
     2761 aacgggttat gtcggtgaaa gccgttattt tctgttgaac gatatacgca ggctggataa
     2821 ggaacgtctg cctttgatgg tggacagata tacggctctc gcgcatccga gccaggagga
     2881 ttttgacggg cattcgggat tccccgagtt ttccattgat gaacggcggc gggaaatttc
     2941 tgtcgaaacc tttggcttgg atattggaaa gcctgttctg gctttttgtc cgggtgcgga
     3001 attcgggccg gcaaagcgtt ggccgacaaa gcattttgcc gagttgggca aacattattc
     3061 ggcggcgggt tggcaggttt ggctgttcgg ttcgcaaaaa gatgatgaaa ttgccgagga
     3121 aatcaaccgc ctttcagacg gcatatgtgt gaatttatgc ggaaagaccg atttgtcgca
     3181 ggcaatggat ttgctgtcgt tggcggacac ggtcgtatgc aacgacagcg ggctgatgca
     3241 cttggcggcg gcattgggca ggaaggtggt ggcggtttac ggttcttcca gcccgacgca
     3301 tacgccgcct ttgagcgaca gggcgaaaat cgtcagcctg cacttggaat gttcgccctg
     3361 ttttaagcgg gaatgtccgc tggggcatac cgactgcctc aacaggctgt atcccgagaa
     3421 gattgtgcag gcggttgaag aggcggtatg atgggttctg ttttcgggtt tatgccgtct
     3481 gacggcggat attgatagga tgtttatggc tattgcgaac aataaaaaag catttcacga
     3541 ttttttcatt gaagaccgga ttgaagccgg tttggtcttg gaaggctggg aagtcaaagc
     3601 aatccgcgcc gcgcgcgtac agcttaaaga gagttatatc tattggaaaa aagacgcgtt
     3661 ttatctggtc ggctgccata ttacggcttt gcccacagcc tcgacacaca ttaaaccaga
     3721 tgccgtacgt ccgcgcaagc tcttgttgaa ccagtcggaa atcaacaaat taatcggcaa
     3781 aaccgaacgt gccggctaca ccatcgtgcc gctggatttg catttttcgc gcggaaaaat
     3841 caagatggaa atcggtttgg caaaaggtaa gaaacagcac gacaaacgtc agagtatgaa
     3901 agaggcggat tggaaacgcg agaaacagcg gttgattaag catacgcgct gattgtggaa
     3961 acagtgcttc agacggtatg ggcaaggctg ccgcctgatg tgtaaacgtt ctacacctaa
     4021 accagcatcc gctttaatca gcacagcatg atgccccaaa ccttcatcaa aggtttgagc
     4081 aatttgatga taaattggca ttaaccaagg gtaaagtgcg gtcatttttc ctgaaatttt
     4141 tgtaaataac gagggcaatt atacacattt tcaaactggc ttgacaaaat agcaaaaagc
     4201 aaacgtttac ttttaataaa taagaaataa atagagaaaa atttgagcta aatgacattt
     4261 tttgttcagt tttatgctaa aatacacgcc ccatttattt ttacttgaca aaggaaaatt
     4321 tattatgaaa ctcgaagcaa gcaagcaagc aagcagaagt ttaaaaaatc atttattata
     4381 agtctatttt tttctattct ttatacctct ccgcttttgg ctgttgatta cgtttacgac
     4441 aaaaccaagc tcactgatga tgaaattacc cgcttaaaaa aactccgcga tagaaatagt
     4501 gaatattgga aagatgatct gttcaggctt gatttgccaa aagatctggg aaatgatttt
     4561 gatggaaaac ctattctccg tcatgacatt gagggggcgg caacaggaaa tttcgtgtat
     4621 ccaattttgt atgacaagag ttttagtagc ttaaataata ttaatcctga caaaaagatc
     4681 tcttttttcg acagccctta tacccctggc tacacggctg ctttcgtgca gggatttggc
     4741 gttaaagaaa gaaatggcaa tacggaagaa gaagctaaac aatatattaa tgaacttaga
     4801 gcaatcttaa aaaaagagag tactacctat tggaaatatt ttttttacgc agaaaatgga
     4861 gaaggcggtg acctcacaca tcaagaatat ggtaatggta ttttcgattc ttatggagac
     4921 gtaaaccata gcaatattaa cagtgaaatt cttgctgttg gtaatgttgc ggatttgtat
     4981 tataaacagt acataagacg ttcacatgta tatctggatg gagctatgct ctctctccct
     5041 tttcccggat taaaagtttc cgaaaattcc catgtcattg ggcaaattat tcatctctac
     5101 gaattaaaac tagaagattc tctttgggaa ccccgttggg attctgatgt cagttatttg
     5161 cgtttataca atagtcatat tcgttttaac acaaaaaatg aaagccttgt tgtaggcgaa
     5221 agtcgcatta gaccaacccc cgataatgcc tcatcacccg aacaatattt taaaagagca
     5281 tatggcaaag atataggtta tcagagtggc tcgccagtca ctacgtgtga ttactcggga
     5341 tgccgtgatg gttattcggg taactcaagt attcactttg cttatgattt gagcgaaaga
     5401 gaggctgaca agcccgtatt aacgttaaaa agcaaggtaa gagggaaaac ggctattgtt
     5461 tttgaagaaa aagccttaaa caatttaaaa aacctgactt accgacagct catcaaaacg
     5521 gaaaccgatg ttgaaccaga tgcgtttttt cttttagaag aatataaaaa aggcagatat
     5581 cgtttatttt tgcaacaatg tccaaacggt ttttgtatcg gtgtagaaaa actcgccatt
     5641 ccaattccaa ctcatcttgt cgcctcctat gcacaacagg ctcaagccgc caatacctta
     5701 ttcgccttgc gtttgaacga caaaaacagc gatatttttg accgcacttt accacgcaaa
     5761 ggcttgtggt tgcgtttaat tagtggtcac ttaagccaag atgtacaagg taaaaccgca
     5821 ccagtagaag gaaatcgtaa aggcatacaa cttggtggcg atgttttctc attgcaaaat
     5881 cacaactatc aactttccgt tggcttaatg ggcggacaag cagaacaacg cagtactttc
     5941 cgcaacccag atacagacaa tcttacaacg ggaaatgtga aaggctttgg tgcaggcgtt
     6001 tacgccactt ggcatcagct tcaggacaaa cagacaggtg cgtatgcgga tagctgggta
     6061 caatatcaac gtttccgcca ccgtatcaac actgaagatg gtacagaacg ttttacttca
     6121 aaaggtatta ctgcctcaat tgaagcaggt tacaacgctt tattggcgga acacgtaact
     6181 aaaaagggca acagccttcg tgtttaccta caaccacagg cgcaattgac ttatttgggg
     6241 gtaaacggaa aattcagcga tagcgaaaat gcccacgtga atttacttgg ctctcgccaa
     6301 ttacaaagcc gagtgggcgt tcaagctaaa gctcaatttg ctttcactaa tggcgtcact
     6361 ttccaaccat ttgtttccgt caattcaatc taccaacaaa aacctttcgg ggtagaaatg
     6421 gacggagaac gtcgagtgat aaacaataag acggcaattg agagccaatt aggtgtagca
     6481 gtgaaaatca aatctcactt aaccttacaa gccacattca accgccaaac aggcaaacat
     6541 catcaaacta aacaaggtgc gttgaatttg cagtggacgt tttaagttaa gttgtaacaa
     6601 aataaaatcg gcagggaaat tcactgccga tttttttatt ttaaaaatgc ggtcattttt
     6661 cgtgtcattt ccaccaattt tttaccgcac tcacgagctc gcgctaaacc gacaatcgga
     6721 tctattgtcc ctttctttgt tgtgtatgca aatcagaaat gccggttacg gaagcagttt
     6781 gcccggattc ataatgttat atggatcaag gtgttgtttg atgcttttca tcagggcgat
     6841 ttcggcaggc gtgcgtactt tgtccagcca ctgttttttg atgataccta tgccgtgttc
     6901 ggcggcaatc gtgccgttgc aggcaagaac gttgcgataa actgcgtcgt tgatgtcgtt
     6961 ttcgtaacga tagacttcat tgctgaggat ttcgggcagg aaagtattgt agtgcaggct
     7021 gccgtcgcca agatgtccga agcagacgat ttgtatgcct ttaaaattct gttccaaatc
     7081 tttggcgcac cggcggacaa agtcggcaac gcgtccgata ggaatggcaa tatcgtgttt
     7141 gatgctggtg cccagtttgc gttgggaggc ggagatgttt tcgcgcaatg cccacatatg
     7201 gatacgttct tgttcgcttt gtgccaatac gctgtcggta aatccttttt tataaagaaa
     7261 ttcgacaagc cgatcatcaa gattgctgtc gggtaatgag tcggtcaact caagtaaaat
     7321 atgccattct gaatgtgtcg gcagggggaa tttgctgaat tcggaagaca actcggcggc
     7381 aaaacggccg attagctcaa aactgcatag gcgttcggca aagtgtgctt gggtttcggt
     7441 cagcaggcgg acggcggatt cgatgtcggg aatgccgacc catgccgttg ccttgtccaa
     7501 gggacgggca aaaagcttga gcgtggcggc agtgatgatg cccagtgtac cttcgctgcc
     7561 gataaacaga tggcgcaggt cgtagccggt ggtgttttta tgcaggggat ggagatggga
     7621 aaccagctcg ccgttgggga ggacgacttc caaaccgata accaggtcgc gcatcgtgcc
     7681 gtaacgcaat acgttcaaac ctccggcatt gcaggcgatg ttgccgccga tttggcacga
     7741 gccttcgctg gcgagactga gtggaaacag cctgtttgag gctgcggctg cctgttggac
     7801 ggtttggagt acggaacctg cttcgacggt tatgcagttg tctgacaaat tgatgctgcg
     7861 gatgcggttg agtttggaaa ggttcagcaa tacgccgttt tccgatactg ccgcgccgca
     7921 caaaccggta ttgccgcctt gcggcgtaac cggaatgcgg tgttcgtaac aaaaacgcat
     7981 aatggtttgc acgctttcaa cgctgcgcgg ctgcaaaatg atgtctggtg cagacgtaaa
     8041 gcggttgcgc tggtctttta aaagcgtcgg agaaagttcg gcaatttcat ctgccggcag
     8101 gagtcgggaa aattcggtat gaaggtcagg catgtttgtc ggaagggtag ggagaagatt
     8161 gaggaaggga atctgatgcc gtctgaaaaa tcaaaaaagc aggatactga acgtatcctg
     8221 cttttttgca agcggaaaat gcttattttg cagcttcggc agcaggagct tcagcagcgg
     8281 gtgcttcggt agcggcagct tcagcagcgg gagcttcggc ggcaggtgct tcagcagcgg
     8341 gagcttcggc ggcaggtgct tcagtagcgg gagcttcagc ggcaggtgct tcggtagcgg
     8401 gagcttcagc ggctttttca ccgccgcagg ctgccaggac caaagacaac aaagcagcgg
     8461 caaacaggga ttttttcatt ttagtaacct ttagaaccaa tttaaattat tgaaacaaat
     8521 aggtctttat cgaccatact acaaaccggg ttggaaattc atcgctgaat ttgcgtaatt
     8581 atgcactatg gaataaggga ttgcaatgtc gtacagatgg gaaaaaggtt tgaatgaaaa
     8641 gttttctggc gggcggattg ataaatcctg taaaacggtt ttgctgttaa aaattcgata
     8701 gggataaata ttatagagat taatataatt tcagtatctt gtatgattta ttaaggcgga
     8761 ttgggaaagt cggcagacag gtcggaatgg ttttaagaat gttgtaaaaa agttacaccg
     8821 caataaaata acaaaaattt acattgaaat atgtgctgta cagtttatga acaggttaac
     8881 ggtaatcggc cggcgcggcg gttgtgttag aatgcgcctg taatcaatct gctgttcctg
     8941 aaaggacaaa tatggctatc gtgaaaaatt ccgtggtttc gctgcattat gagatgtatg
     9001 atgccaacaa tcagcttttg gacaaaaccg aagaaccgat tgcgtatctg cacggcggtt
     9061 acgacggcat tttccctttg gtggaagagg cgttgcacgg taaggatgcc ggcgatacgg
     9121 tcgatgtggc gctgtcgccc gacgatgcgt tcggcgagca ggatccggag ttggttcgta
     9181 ttgaagatgt gggcgtgttc cctgttgaag tcgaagtcgg catgatgttt gaagccgacg
     9241 atcctgaaac cggcgatgtt gtcgtctatc gtgtaaccaa tgttgccgac ggcaaggcgg
     9301 tggtggacgg caaccatcct ttggcaggca tgaaaatccg ctttaaggct acggttgaaa
     9361 gcgtgcgcga tgcatccgat gaggaaatcg cacacggtca tgtccacggc ccgcacggtc
     9421 atcaccacca ctgattgccg gcagcttgga ggtatctgat gccgtctgaa aagggtttgt
     9481 tccgtttcag acggcatttt gtttgatgga tggagaaggt atgtcggttg ggcattatga
     9541 aaattttccc gtcggttcgc tgattttgcc gcgcaggttg aggaagccgg ttcatgcggt
     9601 gtatgcgttt gcacggacgg cggacgatat ggcggacgag ggcagtatgc cgtctgaagc
     9661 caggttggcg gggttggagg gtttgcggcg cgagttggac gtgttggcat cgggcggccg
     9721 gtcggcgcat cctttgattg cacgattgga tgccgaggcg gttgtgccgt tcggtttgga
     9781 tttgcagccg ttttatgatt tgctttctgc attttctcag gatgtggtca aaacgcggta
     9841 cgcgcatttc ggcgagctgg ccgattattg tcggcgttcc gccaaccctg tcggacgcat
     9901 tatgctggct ttgtacggga aaacggatgc ggtgtgcgtg gcgcaaagcg acggcatttg
     9961 tacggctttg caactggtca atttctggca ggatgtggct gtggattggc aaaagggcag
    10021 ggtttatatc ccgcaggacg atttgttgaa attcggtgtt tctgaggaac agatcgcggc
    10081 aggacgggcg gatgcggcgt ttcagcggct gatggcgtat gagtgccgac gcgcattccg
    10141 tatgctgaag gcgggttcgc ctttggcaag ggaactgaag gggcgtatcg gtttggaact
    10201 ccgtatgatt gtgttggggg cgcagttgat tttgcagaaa ctggacgcgt gccgatacga
    10261 tgtgtttgca caacgccccg ttttggataa gaaggattgg ttgattatgc tgaaaaaggc
    10321 gttgtggaaa tgattggggg aaaatgaatg ccgtctgaaa ggggttgttc cgcttcagat
    10381 ggcattttgc aggcggttgg tatggtcagg cgatttcatg cgggttcaac ctggcttgat
    10441 tttctgcacc caagccgatg agtttgcgca gtcgggtcat gtagaaattg acatccaaac
    10501 cggtgccgta gcgttgcgcc gtccacagtg tttccgccag tgcctccatc atttcgtgtt
    10561 cggcttccag ccagccgcgt ttggcgcaca gggtgtcgtg gattgcgcgt atgccgtgcg
    10621 gctggtctat gcccgcctgt tcttggacgg acagatgcag cgacatatgc aggaaggggt
    10681 tgctttcgcc gttttcgggc agccagtcgg tgtccagatg gtcttcgatg cgttcgagat
    10741 agcggtggta ttcgggatgg gcttcgacaa tgcggagggc tttctgttcc agtgcgctca
    10801 gttgcagcgg attgagccgc tgctgccaca cgcgggcgaa aaagcggcgg acatcgtggg
    10861 tattgacatc gtacatggcg ggttcgataa gatgtttatg gaaataggtt cggataatgg
    10921 cgggttttac ataaattaaa tcccaccgtc aaccttacca tttataatgc agacaaatta
    10981 tttgtctgaa acggattcga ttatgaaaaa actgatttgc ctgttcgccg tatttttgat
    11041 gttgtgcgga cgagctttcg cgctggatgc gaacgatctg ctgccgccgg aaaaggcatt
    11101 cgtgccggag cttgccgttg ccgacgacgg tgtgaacgtc cgtttcagga ttgccgacgg
    11161 atactatatg tatcaggcga aaatcgtcgg caagaccgat ccggcggatt tgttgggaca
    11221 gccttctttc agcaagggcg aagagaagga agacgagttt ttcggcaggc agacggttta
    11281 ccatcacgaa gcgcaggttg cctttcctta tgcaaaggct gtcggcgaac cgtataaatt
    11341 ggttttgacc tatcagggct gtgccgaagc cggcgtgtgc tatccgcccg tggataccga
    11401 gtttgatatt tccggcaacg gcacttacca tccgcaaacc gacgaaccgg catccgccaa
    11461 agaccgcttt ttgcagcctt cctctcaaaa cggcagcggg gcgttgccgc ccccgaaggg
    11521 ggatgagggc ggcgacagcc gtttcaagct gtcttgggat acgctcaacg ccaatctttt
    11581 ggcgtttttt ctcgccggtt tgggtctgag ttttaccgcc tgtatgtatc ccctgttgcc
    11641 gattgtttcc agtattgtgg tcggcgacaa aaaggcgggc aaggcgcggg cgtttgtgct
    11701 gtccgtcgtt tatgttcagg gtttggctct gacttatacg ctggtcggca ttgttgccgg
    11761 actgacgggc gcgctgctga ccgtatggtt gcagcaggct tgggtggtgt tggcggcatc
    11821 ggctttaatg gtcgtcttgg cactgtctat gttcgggctg ttcaacatcc agcttcccaa
    11881 cgccgtgcag tcgtattttc agaatcaaag cagcaggctt tcaggcggta aaatcgtttc
    11941 cgtctttatt atgggcatat tgtccgcgct gattgtcggg ccgtgcgtcg ccccgccgct
    12001 ggcatttgct ttgggctaca tcggtcagac gggcgatgcg gttttaggcg gtttggcact
    12061 ttacactttg gcgttgggca ccggcgttcc gctgattgcc atcggcacgt tcggcgggca
    12121 tatcctgcct agggcaggcg attggatgaa tgccgtcaaa tacgctttcg gctttatcct
    12181 gcttgccgtc gccgtttacc tcgccacgcc gcacttgccc tattatctcg tcgtcgcgct
    12241 gtacacgctg ctgatgctgg ttcctgcctg tatgctgctg gtcaacggac gcaggcagaa
    12301 acgccgtccg aaagctgtgg cattcgcatt gggcggcata ttgctgatag gcggcgcgtg
    12361 gttcggctgg cagggcgcaa acggcaaaac gaccgcgctg caccatttcc tgaccctcaa
    12421 tccaccagcc gaagcaggca aatcttcgga acacggcaaa atgtttgccg atactgccgc
    12481 gctgaaggca gcgatggata cggcgttgaa agaacatccc gacaaacccg tcgttttgga
    12541 tttttatgcc gactggtgca tttcctgcaa agaaatggcg gcttacacgc tcaatcagcc
    12601 ggaagtgcat caggcagtcg atatggaacg ctttttccaa atcgacgtaa ccgccaacac
    12661 gcccgaacat caggcgttgt tgaaagaata cggtctgttc gggccgccgg gcgtgtttgt
    12721 cgtccgctcc gacggcagcc gcagcgagcc gctgctgggt tttgtcaaag cagacaagtt
    12781 tatcgagtgg tatgaacaaa accgctgatt ccgatgtttc aaatgccgtc tgaagttctc
    12841 agacggcatt tttgtcagaa aggaaaacgg caatatccgc tatacacacg gaagcagtcc
    12901 aaagatgtga aaaccgtgtg tataagttag tttgcgtatt gaaattaaaa gataaaaata
    12961 cgatgattaa aaaataggca taagaaaaga taaacacagc cggtgtttgc cggtgtgtgt
    13021 atcttttgtg gaaaaacatc ttaatgtcat gtattttatg gaaaataata acatgattaa
    13081 aaaatagtca atcattaagg ttcaggtaag cggctgcaac cgtcaatgtc tgaaaagagg
    13141 cagtgctgtt taagcatgga aagccggata aaaaaaactg cctccgtttc cggaggcagt
    13201 tcgtgtgcgg ataaaacctt acagaccgct caaacgggca gtgtcgtggg caatcatcag
    13261 ctcttcgttg gtcggaatga ccacggcaac ggctttgctg tcggcggtgg taatcacgcc
    13321 ggcgttgccg aagcgggctt tcaggttggc ttcttggtcg atgttcagac cgaggaagcc
    13381 caagtagccg atcacgcgtt cgcggatgat gtcggagttt tcgccgatgc cgccggtaaa
    13441 gaccagtgcg tccaaaccgc ctgcggcaac cgccatactg ccgatgtatt tggcaaggcg
    13501 gtagataaac atatccaagg ccaatttcgc gcctttatgc cccttggcgg cttcttcttc
    13561 aatggtacgg cagtcgttgg acaggccgga aatgccgagc agaccggatt ttttattcag
    13621 catttcagtg atttgggcga tggtcatatt ggcgttttcg gcgaggaagc cgaatacgga
    13681 aggatcgatg tcgccgctgc gcgtacccat taccagccct tccagcgggg tcaggcccat
    13741 actggtgtcg cgcgattcgc cgttggcgac ggcggtgatg gacgcgccgt tgcccaagtg
    13801 ggcaatgacc atacgcaggt cttttttgtc tttgccgagg aagcgcgcgg tttcgtcggc
    13861 gacgaagcgg tagctggtac cgtgcgcgcc gtaacggcgc aggccgtatt tttcatacaa
    13921 ctcctgcgga acggcgtatt tgtaggcgac ttcgggcatg gtttggtgga aggaggtatc
    13981 gaatacgacg acgttgggca ggcctttgaa aatgctttgc gcggcacgca ggcccaagag
    14041 gtgggcgggg ttgtgcaggg gggcgagcgg gatgcatttt tcgatgccgg caatgacttc
    14101 gtcgtcaacg aggatggatt cgctgtacag ttcgccgccg ctgacgacgc ggtggccgat
    14161 ggcgccgatg cggctgtcga ggccgtgggc tttgagttct tccatcaggg cttcgaccgc
    14221 gccggtgtgg tcgggatgtg cggacagatc gactttgtgt ttttcgccgt ttactttgaa
    14281 tgtgatgtag gcatcgggca ggttgagttt ttcggcaagg cagctcagca ggacttcgcc
    14341 gctgccgtta tccaggaccg cgcctttgag ggacgagctg ccgcagttca aaaccaagat
    14401 caatttttgg gacattttct tactccggaa agtttcagac ggcattggaa tcggacacgg
    14461 atactaaccg gattcgtgcc gaatccgttt tgccttcctg ggcgggaaag tagtggggcc
    14521 gtctgaaaag gttgataaaa gaagcaggct attctagcaa aaaatctttg caattgcttg
    14581 gcttaatcgg gcgtttgcgt gaaaatggcg gaagtcgggc attttgacgg aaaaaagggg
    14641 gatatgcggt ttgccggtgt tttcggctgg gtgagggaga atttctttgc attcttcccg
    14701 tccaaactgg tacattcgcc ctgtttttag ttggtgtcgt ctgaaaaaag gcgggtggga
    14761 aatttatgca ttatttcagt attcatgacc aatcgggacg gcatataggc tttttcatcc
    14821 tgcttgccga cgatgagtcg gaggcgcggc cgcagagcgg acgttttgcc gttaaattgg
    14881 aagatggagc gggcaaccat gtcctgtcgc cgtttgccca gacggaaatc ccccaatatt
    14941 ggcgcgtggt caaagaccgt atcgagctgt tttttgacga agcccccgtc ggaactttgc
    15001 gtaacgaata tctgaccgta tcggggcaga cttttgtttt gaacgatttg acagggaata
    15061 tatgatggaa agtatgttta tattggtgcc catcagcatt attttggcgt ttgtcatcgg
    15121 ctggtttttt tggtggtcgg gcaaaaacgg gcagtttgac gacttggaag ggccggcgca
    15181 ccgcatcctg atggatgatg attcgacaag taaactgatt gaaaaagaga aggaaaacga
    15241 tgtacgctaa aaaaggcggt ttgggactgg ttaaaagccg ccgtttcgca cctcttttcg
    15301 ctacgcagtt tctcggcgcg ttcaacgaca atgtgttcaa aaccgcgctg tttgtgatga
    15361 ttgggtttta cggtttgggg caaaacggct tcctgcctgc cggacagatg ttgaacttgg
    15421 gcgcgttgtt gtttattttg ccgtatttcc tgttttcctc gctgtcgggg cagttgggta
    15481 acaaattcga caaggccgtt ttggcgcgtt gggtcaaggt gctggaaatg atcattatgg
    15541 cggtggcggc atacgggttt tatatccggt ctgccccgct gcttttggcg tgtctgtttt
    15601 gcatgggcgc gcaatcgacg ctgttcgggc cgctgaaata cgccatcctg cccgattatc
    15661 tcgacgacaa agagttgatg atgggcaaca gcctgattga atcgggtacg tttgtcgcca
    15721 tcctgttcgg tcagattttg ggaacggcgg tggcaggtgt accgccttat attgtcggga
    15781 tactggtttt gctggtcgcc gtaggaggca cggtcggcag cctgtttatg ccgtccgtac
    15841 ccgccaaggc tgccgataca caaattgagt ggaatattgt ccggggtaca aaatccctgc
    15901 tgcgtgaaac ggtgcggcac aagcccgttt ttaccgccat tatcggtatt tcgtggtttt
    15961 ggtttgtcgg cgcggtttat accacgcaac tgccgacctt tacccaaatc catctgggcg
    16021 gcaacgacaa tgttttcaac ctgatgcttg ccctgttttc catcggtatt gccgccggtt
    16081 cggtactgtg tgccaagttc agcagggaac ggctgaggtt ggcttgggta acggttggtg
    16141 cgttgggttt gacggtttgc ggcttggttt tggtgtggct gacgcacgga caccgttttg
    16201 aagggctgaa cggcattttt tggtttttat cgcaaggatg ggcatatccc gtgatggcgg
    16261 tgatgacgct gatcggcttt ttcggcggat ttttctccgt tccgctctat acctggctgc
    16321 aaaccgccag tagcgagact ttccgcgccc gcgccgttgc cgccaacaat atcgttaacg
    16381 gtatttttat ggtttccgct gccgttttga gcgcggtgtt gctgtttttg tttgacagca
    16441 tttccttgtt gtatctgatt gtcgctttgg gcaatattcc gttgtcggta tttttgatta
    16501 agcgcgaaag gcggttttta ggcgcggcgg caatcaggaa aaaaccttga atgccgtctg
    16561 aaaaaattgt ccccaaaata cacaatccgc ctgcccaatg ttgtgaacac actgtgaata
    16621 agtgggtttg tgcattgaaa tgaaaacaga aaaatacatt gcttaaaaaa taagcaattt
    16681 acgaagatag aagaaagaca ccgatatgac gacacgccaa atcatcctcg ataccgaaac
    16741 caccggtctg tatgccgacg gcggcgaccg cttggtcgag tttgccggtc tggaaatggt
    16801 caaccgccaa atgaccgaca aaaacctgca cctctatgtc caccccgagc gcgatatgcc
    16861 cgaagaggcg gcgagggtgc acggtctgac gatagaggtt ttggaaggga aaaacgcgcc
    16921 gccgtttgca gaggtcggca ggcagattgc cgatttcctg cgcggtgcgg aactgattat
    16981 ccacaatgcc aaattcgacg tgggcttcct caatatggag ttccgccgga tggggttgcc
    17041 gactgtcgag gaactcggct gtaccgttac cgataccctg gcgatggcgc gcgaaatgtt
    17101 ccccgggcag aaagccagcc tggatgccct gtgcaaccgt ttttccgtcg accgcagcaa
    17161 gcgcgtcctg cacggcgcat tgatcgactg cgaacttttg ggcgaagtct atcttgctat
    17221 gacgcggcgg cagttcgacc tgatggggga ggccgcagag gaaaaaatgg aaaccaaacc
    17281 cgtggtgcat accgaaacca aacgcagcgg caaactgaaa gtcatcaggg cggacgaaaa
    17341 cgagttggcg gaacacgggc aatatttgga cggcttgggc gaagcctgta tctggcgcaa
    17401 ggaagccgtg ccgtctgaaa acggcgggac ggacgcatga agcgcaaaaa tatcgcgctg
    17461 attcccgccg ccggcatcgg ggcgcgtttc ggtgcggaca aacccaagca atatgtcgaa
    17521 atcggaagca aaaccgtttt agaacatacg attgggattt ttgaacggca tgaggccgtc
    17581 gatttgaccg tcgttgtcgt ctcgcccgaa gacacgtttg ccgataaggt tcagacggca
    17641 tttccacagg ttcgggtgtg gaaaaacggc ggacagaccc gcgccgaaac cgtccgcaac
    17701 ggtgcggaaa aactgttgga aatcggcttg gcatcggcgg atgacaatat tctggtacac
    17761 gatgccgtgc gctgctgcct gccgtctgaa gctttgacgc ggttgataga acaggcgggc
    17821 aacgccgccg aaggcgggat tttggcaatt cccattgccg atacgctcaa gtgcgcggac
    17881 ggtgggaaca ttagtgcaac cgtcgagcgg acgagccttt ggcaggcgca aacgccgcag
    17941 cttttccgcg ccgggctgct gcaccgcgca ttggctgcgg aaaacttgga cggcattacc
    18001 gatgaagcgt ccgccgtgga aaaattgggt gtgcgtccgc tactgataca gggcgacgtg
    18061 cgcaatttga aactgacgca gccgcaggac gcatacatcg tcaggctgct gctcgatgcc
    18121 gtctgaactt caattcaaaa catcaggaac acaaacgatg acgaacatcc gtatcggaca
    18181 gggctacgat gtccaccaac tgaccgaagg cagaaagctg atacttggcg gagttgaaat
    18241 cccatttgaa aaagggctgc tcggacactc cgatgccgat gcgctgctgc acgccgttac
    18301 cgacgcgctg ctcggtgcgg caggtttggg cgatatcggc agccatttcc ccgacaccgc
    18361 cgcagagttc aaagatgcgg acagccgcgt ccttttgcgt gcggcgtatc aaagcgttca
    18421 ggcgcagggt tggcaggcgg tcaatgtcga tacgaccgtg attgcacaga aacccaaact
    18481 cgcgccgcat attccgcaaa tgcgtgccaa catcgccgcc gatttgggca tagacatttc
    18541 gtgcgtcaac atcaaaggca aaaccaacga aaaactcggt tatctcgggc gcatggaagg
    18601 catagaggcg caggcggcgg tattgctggt aaggatttga acgcggcggg caggacgtgc
    18661 aaaaaaatgt taagatggcg gctgtttgtt gatacggttt cccaaaggac aaaaatatga
    18721 cgacacaaga cgaactcaag cgcatcgccg ccgaaaaagc agtcgaattc gtacccgaaa
    18781 acgaatacat cggcatcggt accggctcga ccatcaactt tttcatcgaa gccttgggca
    18841 aaagcggcaa aaaaatcaaa ggcgcggttt caacctccaa aaaatccagc gaactgcttg
    18901 cccagtacga cattcccgtc gtttccctga acgaagtatc ggggttggcg gtctatattg
    18961 acggtgcgga tgaagtgaac cacgccctgc aaatgattaa aggcggcggc ggcgcacacc
    19021 tcaacgaaaa aatcgtcgcc agcgcatcag aaaaattcgt ctgcattgcg gacgaaagca
    19081 aatatgtttc acgtttgggc aaattccctc tgcccgtgga agtcgtcgaa agcgcgcgtt
    19141 cccttgtttc gcgcaaactg ctcgctatgg gcggacagcc tgaattgcgt atcggctaca
    19201 ccacttttta cggcaaccaa atcgtcgatg tccacggctt gaatatcgat cagccgctga
    19261 cgatggaaga cgaaatcaac aaaatcaccg gcgtactcga aaacggaata ttcgcccgcg
    19321 atgccgccga tgtgttgatt ttggggacgg aagagggtgc gaaagtcatc tatccctgcc
    19381 aagggtaatc ctgacgttaa gatgccgtct gaaatccggt tcagagatgt tcagacggca
    19441 tcggcatttg aaaaatatgc agattaaaaa aatcatgaaa tggcttcccg tcgccctgtc
    19501 gcttttgggt gcgttgggtt atacggggta cggcagcgag gcggtgcgga cggcggttgc
    19561 cgtactcgac gtactcggcg cggcagggga cgcgggttcc gacgcgcccg cccgccgccg
    19621 agcatcggcg aaatccggcc accgctacac aggcacggtg tccaaagtct atgacggcga
    19681 cacccttcac gttatcgacg gcgacggcgc gaaacacaaa atccggatgg cgtatatcga
    19741 cgcgccggag atgaaacagg cttacggcac gcgttcgcgc gacaacctgc gcgcggcggc
    19801 ggaaggcagg aaagtcagcg tgcgcgtgtt cgataccgac cgctaccagc gcgaagtggc
    19861 gcaggtttct gtcggcaaaa ccgatttgaa cctgatgcag gtgcaggacg gggcggcgtg
    19921 gcattataaa agttatgcta aagaacagca ggataaggcg gattttgccg actatgccga
    19981 cgctcaaatt caggcggaaa gggaacgcaa aggattgtgg aaagctaaaa atccgcaagc
    20041 gccgtgggcg taccgccgag caggcaggag cggcgggggc aataaggatt ggatggatgc
    20101 cgtgggcgaa tggttgggca tttggtaaag acaccgcacg gctttgaacg gcaaatgccg
    20161 tctgaaaacc gcgcgccctg catttttgcg gagacgcgca accgccgtct gccgcgataa
    20221 aaaagttcag gcggcggttt ttacggtaaa atggcggatt attttgcaac ggcggcagtt
    20281 ccgccggttt ttgatacgga cggtatatgg attttcgttt tgacattatt tacgaatacc
    20341 gctggatgtt cctttacggc gcactgacga ccttggggct gacggtcgtg gcgacggcgg
    20401 gcggttcggt attgggtctg ttgttggcgt tggcgcgcct gattcacttg gaaaaagccg
    20461 gtgcgccgat gcgcgtgctg gcgtgggcgt tgcgtaaagt ttcgctgctg tatgttacgc
    20521 tgttccgggg tacgccgctg tttgtgcaga ttgtgatttg ggcgtatgtg tggtttccgt
    20581 ttttcgtcca tccttcagac ggcattttgg tcagcggcga ggcggcaatc gcgctgcgtc
    20641 gcggatacgg gccgctgatt gccggttctt tggcactgat cgccaactcg ggggcgtata
    20701 tctgtgagat tttccgcgcg ggcatccagt ctatagacaa aggacagatg gaggcggcgc
    20761 gttctttggg gctgacctat ccgcaggcga tgcgctatgt gattctgccg caggcattgc
    20821 gccgcatgct gccgcctttg gcgagcgagt tcatcacgct cttgaaagac agctcgctgc
    20881 tgtcggtcat tgctgtggcg gagttggcgt atgttcagaa tacgattacg ggccggtatt
    20941 cggtttatga agaaccgctt tacaccgtcg ccctgattta tctgttgatg acgactttct
    21001 taggctggat attcctgcgt ttggaaaaac gttacaatcc gcaacaccgc tgattggagt
    21061 catatcaaca aaaagctgcc cgggtattca tttgaggcag cttttttgtg gcaaatttat
//
LOCUS       DAWGNT010000021        20686 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.021, whole genome shotgun sequence.
ACCESSION   DAWGNT010000021 DAWGNT010000000
VERSION     DAWGNT010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 20686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20686
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.021"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(63..239)
                     /locus_tag="WHR98_000535"
     CDS             complement(63..239)
                     /locus_tag="WHR98_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307254.1"
                     /translation="MKSRRFFKALLLIAALVGAFYAGMQTQAYLYEDLCLDLGGGKNP
                     GSYPICVIEKVPAR"
     gene            complement(242..1600)
                     /locus_tag="WHR98_000536"
     CDS             complement(242..1600)
                     /locus_tag="WHR98_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEZ2307255.1"
                     /translation="MKPLDLNFICQALKLPMPSESKPVSRIVTDSRDIRVGDVFFALA
                     GGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKAWRENVNPF
                     VFGITGSGGKTTVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAV
                     IEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDG
                     MALIPQEDANMAVFKTATLNLNTRTFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAV
                     VLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDD
                     TYNANPDSMRAAIDVLARMPAPRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAY
                     FVGDNSVEAAEKFGADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALE
                     DK"
     gene            complement(1725..3371)
                     /locus_tag="WHR98_000537"
     CDS             complement(1725..3371)
                     /locus_tag="WHR98_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HEZ2307256.1"
                     /translation="MKQSARIKNMDQTLKNTLGICALLAFCFGAAIASGYHLEYEYGY
                     RYSAVGALASVVFLLLLARGFPRVSSVVLLIYVGTTALYLPVGWLYGAPSYQIVGSIL
                     ESNPAEAREFVGNLPGSLYFVQALFFIFGLTVWRYCVSGGVFADVKNYKRRSKIWLTI
                     LLTLILSCAVMDKIASDKDLREPDAGLLLNIFDLYYDLASAPAQYAAKRAHILEAAKK
                     ASTWHIRHVAPKYKNYVVVIGESARSDYMNVYGFPLPDTPFLSQTKGLLINGYQSTAH
                     ATNLSLPQTLGLPGEPNNNIVSLAKQAGFRTAWLSNQGMLGHFANEISTYALRSDYPW
                     FTQRGDYGKSAGLSDRLLLPAFKRVLIGNAGTKPRLIVMHLMGSHSDFCTRLDKDARR
                     FQYQTEKISCYVSTIAQTDKFLEDTVKILNENKESWSLVYFSDHGLMHVGKGGERTLT
                     HGAWKRQSYGVPLVKISSDDTRREMIKVRRSAFNFLRGFGSWTGIETDELPDDGYDFW
                     GNVPDVQGEGNNLAFIDGLPDDPAPWYAGKGKSTKNTSKK"
     gene            complement(3394..4872)
                     /locus_tag="WHR98_000538"
     CDS             complement(3394..4872)
                     /locus_tag="WHR98_000538"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEZ2307257.1"
                     /translation="MFSKLTPLAETGIPTLSCANAAGRLLHSDSRQIKQGDIFVACPG
                     EYADGRSYTPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDLKHRAGILAAQVYGN
                     VSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWGALEETTHTTPAP
                     VDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRDHLDYHGTMEA
                     YGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEHADIRITDF
                     TASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACIALLCANGYPLDNVLDVLAKIR
                     PASGRMDCIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWCVFGCGGNRDRG
                     KRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADRAAAIRYAVE
                     QAAANDIILIAGKGHENYQDVQGVKHRFSDLEIVGQALLTRK"
     gene            complement(4897..6642)
                     /locus_tag="WHR98_000539"
     CDS             complement(4897..6642)
                     /locus_tag="WHR98_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEZ2307258.1"
                     /translation="MLIKSEYKPRMLPKEEQVKKPMTSNGRISFVLMAIAVLFAGLIA
                     RGLYLQTVTYNFLKEQGDNRIVRTQTLPATRGTVSDRNGAVLALSAPTESLFAVPKEM
                     KEMPSAAQLERLSELVDVPVDVLRNKLEQKGKSFIWIKRQLDPKVAEEVKALGLENFV
                     FEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSLHGEDGAEVVLRDRQGNIV
                     DSLDSPRNKAPKNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTGEIL
                     ALANTPAYDPNRPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERLNT
                     QPYKIGPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGVRM
                     HSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPVSFE
                     KQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKFVNGR
                     YADNKHIATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLNILGI
                     SPTKPLTAAAVKTPS"
     gene            complement(6703..6966)
                     /gene="ftsL"
                     /locus_tag="WHR98_000540"
     CDS             complement(6703..6966)
                     /gene="ftsL"
                     /locus_tag="WHR98_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HEZ2307259.1"
                     /translation="MNKLNFLLLLAVCVSAFSVVMQQNQYRLNFTALDKAKKQEIALE
                     QDYAQMRLQQARLANHEAIRAAAEKQNLHPPVSGNTFMVAHQR"
     gene            complement(6963..7949)
                     /gene="rsmH"
                     /locus_tag="WHR98_000541"
     CDS             complement(6963..7949)
                     /gene="rsmH"
                     /locus_tag="WHR98_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEZ2307260.1"
                     /translation="MSGAESYRHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLIL
                     SRLGDAGRLIVFDKDPQAIAVAEELARSDKRVGVVHGGFASFQTALDGLGIGKVDGAL
                     FDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGE
                     ERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQDPATRTFQAVRIFINRE
                     LEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADL
                     PELPLKIVGRALKPGEAEIAANPRARSAVLRVAERTAGSIPEQSQRKTSEWQ"
     gene            complement(7946..8401)
                     /gene="mraZ"
                     /locus_tag="WHR98_000542"
     CDS             complement(7946..8401)
                     /gene="mraZ"
                     /locus_tag="WHR98_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HEZ2307261.1"
                     /translation="MFGGAHELSIDSKGRLAVPAKFRDILSRLYTPAVVVTLESKHKL
                     LMYPVAEWEKVAAQLLNLKVADNPVLRRFQNLLLHNAEILEWDSAGRVLLPAGLRKRV
                     DFDREVVLVGRANRLELWGREQWEAEMVQALDDDPDELAFQLSQTDLQL"
     gene            8680..9897
                     /locus_tag="WHR98_000543"
     CDS             8680..9897
                     /locus_tag="WHR98_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEZ2307262.1"
                     /translation="MTAPLPTCNMSGNPINLHKLTLIMPLPLPSPEARQFSLKLQTLI
                     AEKIGKHGNWIPFSRFMELVLYAPQYGYYTGGSHKIGNTGDFITAPTLTSLFAQTLAR
                     QLQELLSQTAGNIYEFGAGTGQLAADLLGSISDGISRYYIIEISPELAARQKNLIQAR
                     APEASQKVVHLTALPEAFDGIIIGNEVLDAMPVEIVRKNEGGSFEHVGVCLDNDRFTY
                     SARPLHDLQLSALASLYFPQTDYPYTSELHPQQYAFIRTLASRLERGGMIFIDYGFDA
                     AQYYHPQRNQGTLIGHYRHHVIHNPFDFIGLADLTAHVNFTDIAQAGTDAGLDLIGYL
                     PQSHFLLNLGITELLAQTGKTDSAAYIREAAAVQKLIDQHEMGELFKVIAFGKNIGID
                     WAGFRFGDICHKL"
     gene            10029..10105
                     /locus_tag="WHR98_000544"
     tRNA            10029..10105
                     /locus_tag="WHR98_000544"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10063..10065,aa:Met,seq:cat)
     gene            10113..10188
                     /locus_tag="WHR98_000545"
     tRNA            10113..10188
                     /locus_tag="WHR98_000545"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10146..10148,aa:Ala,seq:ggc)
     gene            complement(10470..11291)
                     /locus_tag="WHR98_000546"
     CDS             complement(10470..11291)
                     /locus_tag="WHR98_000546"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEZ2307263.1"
                     /translation="MDFLIVLKALMMGLVEGFTEFLPISSTGHLIVFGNLIGFHSNHK
                     VFEIAIQLGAVLAVVFEYRQRFSNVLHGVGKDRKANRFVLNLAIAFIPAAVMGLLFGK
                     QIKEHLFNPLSVAVMLVLGGLFILWVEKRQSWAEPKIADVDALRPIDALMIGVAQVFA
                     LIPGTSRSGSTIMGGMLWGIERKTATEFSFFLAVPMMVAATAYDVLKHYRFFTLHDVG
                     LILIGFVAAFVSGLVAVKALLRFVSKKNYIPFAYYRIVFGIAIIILWLSGWISWE"
     gene            complement(11324..11968)
                     /locus_tag="WHR98_000547"
     CDS             complement(11324..11968)
                     /locus_tag="WHR98_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEZ2307264.1"
                     /translation="MKLKHLLPLLLSAVLSAQAYALTEREDYLVLDKPIPQEQSGKIE
                     VLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGL
                     KYQANPAVFKAVYEQKVHLEDRAVAGKWALSQKGFDGKKLMRVYDSPEAAAAASKMQK
                     LTEQYGIDNTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQPPAVQK"
     gene            complement(11971..12816)
                     /gene="ftsN"
                     /locus_tag="WHR98_000548"
     CDS             complement(11971..12816)
                     /gene="ftsN"
                     /locus_tag="WHR98_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HEZ2307265.1"
                     /translation="MNKFSQSGKGLSGFFFGLILATVIIAGILFYLNQSGQNAFKIPA
                     SSKQPAETEILKPKNQPKEDIQPEPVDQNALSEPDAATEAEQSDAEKAADKADEVEEK
                     AGEPEREEPDGQAVRKKALTEEREQTVREKAQKKDAETVKKQAVKPSKETEKKASKEE
                     KKAEKEKVAPKPTPEQILNSGSIEKARSAAAKEVQKMKTSDKAEATHYLQMGAYADRR
                     SAEGQRAKLAILGISSKVVGYQAGHKTLYRVQSGNMSADAVKKMQDELKKHEVASLIR
                     SIESK"
     gene            complement(12922..14418)
                     /locus_tag="WHR98_000549"
     CDS             complement(12922..14418)
                     /locus_tag="WHR98_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEZ2307266.1"
                     /translation="MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKE
                     SRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGRFDLPIAIGILAASGQVAPEKLA
                     EYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
                     GEVAAHLNGIEPLVQTDCQVPQMPSENTKLLDLVDVKGQHTARLALEIAAAGGHSLLM
                     MGPPGTGKSMLSQRLPGILPPLTEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSAS
                     AAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLENGEIHISRAARQA
                     VYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSL
                     SAAELMQQEAGERSASVLERVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEAL
                     GSLLEKLSLSARSFHRIMRVARTLADLAGDEEVGRSHVMKAIGFRRAL"
     gene            complement(14432..14752)
                     /locus_tag="WHR98_000550"
     CDS             complement(14432..14752)
                     /locus_tag="WHR98_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003763371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HEZ2307267.1"
                     /translation="MFGKQLFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLV
                     TREEFDIQQQVLIKTRTKLAALEARLAKLEAAQNPERAALEAAEAAAEEAVAEIRQQT
                     EAGE"
     gene            15235..16761
                     /gene="putP"
                     /locus_tag="WHR98_000551"
     CDS             15235..16761
                     /gene="putP"
                     /locus_tag="WHR98_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEZ2307268.1"
                     /translation="MNPMYITFAIYLVAVLLIGLAAYFSTRNFDDYILGGRSLGPFVT
                     AMSAGASDMSGWLLMGLPGAIYLSGLNEAWIAIGLLVGAYFNWLLVAGRLRVHTEYAN
                     NALTLPDYFFHRFGAGGHLMKVVSALIILFFFTIYCASGIVAGATLFQSLFEGMTYNQ
                     AMWLGAGATIAYTFLGGFLAVSWTDTLQASLMIFALILTPVMVYLGLGGAEQMSAAIQ
                     SVAAGTGKEYGSLFAGTTVIGIISTAAWGLGYFGQPHILARFMAAESAKSLVSARRIG
                     MTWMALCLAGAVAVGYFGIAYFGANPDKVSSMSGNHERIFIALSTLLFNPWIAGIILS
                     AILAAVMSTLSCQLLVCSSAITEDFYKGFLRKNAQQSELVWVGRLMVLAIAVISILIA
                     SDPNSKVLGLVSYAWAGFGAAFGPIVILSVLWKRITAYGALSGMVAGALTVVVWAEWI
                     KKPAQAAGESGLLTMYEIVPGFIVCLIIAVLVSLFNKEPSREIQKRFEKADADYRAAR
                     "
     gene            complement(16851..17018)
                     /locus_tag="WHR98_000552"
     CDS             complement(16851..17018)
                     /locus_tag="WHR98_000552"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307269.1"
                     /translation="MKHFLDSPKFFGGQAASVRPEYGNIVINPQMKYKASNAGRVGAS
                     VSLKMKRVKHK"
     gene            17010..20615
                     /gene="putA"
                     /locus_tag="WHR98_000553"
     CDS             17010..20615
                     /gene="putA"
                     /locus_tag="WHR98_000553"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HEZ2307270.1"
                     /translation="MFHFAFPAQTALRQAITDAYRRNEIEAVQDMLQRAQMSDEERNA
                     ASELARRLVTQVRAGRTKAGGVDALMHEFSLSSEEGIALMCLAEALLRIPDNATRDRL
                     IADKISDGNWKSHLNNSPSLFVNAAAWGLLITGKLTATNDRQMSSALSRLISKGGAPL
                     IRQGVNYAMRLLGKQFVTGQTIEEALQNGKEREKMGYRFSFDMLGEAAYTQADADRYY
                     RDYVEAIHAIGKDAAGQGVYEGNGISVKLSAIHPRYSRAQHGRVMGELLPRLKELFLL
                     GKKYDIGINIDAEEANRLELSLDLMEALVSDPDLAGYKGIGFVVQAYQKRCPFVIDYL
                     IDLARRNNQKLMIRLVKGAYWDSEIKWAQVDGLNGYPTYTRKVHTDISYLACARKLLD
                     AQDAVFPQFATHNAYTLGAIYQMGKGKDFEHQCLHGMGETLYDQVVGPQNLGRRVRVY
                     APVGTHETLLAYLVRRLLENGANSSFVNQIVDENISIDRLIKSPFDTIAEQGIHLHNA
                     LPLPRDLYGKCRLNSQGVDLSNENVLQQLQEQMNKAAAQDFHAASIVNGKARDVGEAQ
                     PIKNPADHDDIVGTVSFADAALAQEAVGAAVAAFPEWSATPAAERAACLRRFADLLEQ
                     HTPALMMLAVREAGKTLNNAIAEVREAVDFCRYYANEAEHTLPKDAEAVGAIVAISPW
                     NFPLAIFTGEVVSALAAGNTVIAKPAEQTSLIAGYAVSLMHQAGIPTSALQLVLGAGD
                     VGSALTGDTRIGGVIFTGSTEVARLINKALSKRDDNPVLIAETGGQNAMIVDSTALPE
                     QVCLDVLNSAFDSAGQRCSALRILCVQEDVADKMVNIIKGAMDELVVGKPTQLTTDIG
                     PVIDAEAQQNLLVHINKMKGVAKSYHEVKTAADVDSEKSTFVRPILFELNNLNELQRE
                     VFGPVLHVVRYRADELDSVIDQINSKGYALTHGVHSRIEGTVRHIRSRIEAGNVYVNR
                     NIVGAVVGVQPFGGHGLSGTGPKAGGSFYLQKLTRADEWVAPTLSQIGQADEAALKRL
                     EALVHKLPFNAEEKKAAAAALGHARIRTLRRAETVLTGPTGERNSISWHAPKRVWIHG
                     GNTVQAFAALTELAASGVQAVVEPDSPLASYTADLEGLLLVNDKPETAGISHVAALSP
                     LDSARKQELAAHDGALIRILPSENGLDILQVFEEISCSVNTTAAGGNASLMAVAD"
BASE COUNT         4842 a         5961 c         5044 g         4839 t
ORIGIN      
        1 cgggcctgcg cccgtttgag gttggcttgc cgcccggcaa ggtttcggac ggcttttgca
       61 gattaacgtg cagggacttt ctcaatcacg caaatcgggt aactccccgg atttttgccg
      121 ccgcccaagt ctaaacataa atcttcataa agatacgcct gcgtctgcat tccggcataa
      181 aacgcgccga ccagcgcggc aatcaacaat aaggctttaa aaaaacgtcg acttttcatt
      241 ttcacttatc ctccaatgcc tcgaccactt cttccatctg cataaagcgc gaacctttca
      301 ccaacacggt ggcgcgttcg ggcaaatcgt ggcgcaacac ttgaatcaac gggtctttgg
      361 cggcgaacca caaaccgtcc gcgccaaatt tttccgccgc ttcgacgctg ttgtctccga
      421 caaaataagc cgcttcgatg ccttggtcgc gggcgtacgc gccgacttcg gcgtgcatgg
      481 cggcggcttc gtcctcaccc agttcgccca tatcgcccat cacaaaaatg cgcggcgcag
      541 gcatacgcgc caacacgtca atcgctgccc tcatgctgtc ggggttcgcg ttgtaggtat
      601 cgtcaatcag ggtcgcgccc ttgatgccgg ctttgacgtt cagacggcct ttgatgttgc
      661 tgaagccttg caaaccttcc gccacatcgt tcagactcaa acccgcagcc aaagacagcg
      721 cggcggcagc ggcggcgttg tggacattgt ggcggccggg aacaggcagc accacggcgg
      781 cgcgttcgtc gccgcacacc aaatcaaatt cgcacgacaa cggtttcagc acgatatttt
      841 ccgcgtggac atcgccgcta tcgatgccga aagtgcgcgt attcaaatta agcgttgccg
      901 ttttgaagac agccatattg gcatcttctt gaggaatcag cgccatgccg tctgaacata
      961 agccttgata aatctcgctt ttcgctttgg caatatcgcc cactccgtcg aaaccgcagc
     1021 cgacatgggc gcgcatggcg ttgttgacca atgcggcatc gggtttggcg atttgtgtca
     1081 aaaccgccag ttcgccaaaa tggttcatac ccatttcaat cacggcatag cggtgttttt
     1141 cgtttaattt caacaaagtc aacggcaatc cgatgtggtt gttgaagttg cctgccgtcg
     1201 ccaaaacggc attatcgccg aaacggcggc gcaataccgc agccaacatt tccttcaccg
     1261 tcgtcttacc gcccgagccg gtaataccga acacaaacgg gttcacattc tcgcgccacg
     1321 cctttgccag cgtttgcaat gcggcaagcg tgtcatcgac tttcaacgcg ccatccattg
     1381 caacgcaatc ttcgcgcgaa accacaaccg ccgccgcacc cgcagccaat acgtcttcaa
     1441 caaaatcatg cgcgtcaaac cgcccgcccg ccaatgcgaa aaacacatcg cctacgcgga
     1501 tgtcgcggct gtcggttacg atgcgcgaca cgggtttgct ttcagacggc atcggaagct
     1561 tgagggcttg gcagatgaaa tttaggtcca gtggtttcat atttactttc gttaatattc
     1621 gggcggcgga cacatcggca gcggctgatt tttttatcgc ctgttttgct gtggtaaaac
     1681 acagattatt ttcccattct cattcggcat tttttctgta cgtatcattt tttagacgta
     1741 tttttagtcg atttgccttt tcccgcatac cacggcgcgg ggtcgtcggg cagtccgtcg
     1801 ataaaggcaa ggttattgcc ttcgccctgc acatcgggaa cattccccca aaaatcatag
     1861 ccgtcatcgg gcaactcgtc ggtttcgata cccgtccaac tgccgaatcc gcgtaaaaaa
     1921 ttaaacgcgc tgcgcctcac tttaatcatt tcgcgccgcg tgtcatcgga cgaaatttta
     1981 accagcggca cgccgtagct ttgacgcttc cacgcaccat gtgtcaacgt tcgctcgccg
     2041 cctttaccga catgcatcaa accgtggtcg gaaaagtaaa ccaaagacca gctttcttta
     2101 ttttcattca atatcttaac tgtatcttct aaaaatttat cggtttgcgc gatggtggaa
     2161 acatagcagg atattttttc agtttgatac tgaaaccgcc gcgcatcctt atccaaacgt
     2221 gtgcaaaaat cactgtgcga acccatcagg tgcatcacaa tcagccgagg cttcgtgcct
     2281 gcatttccta tcaaaacccg tttgaacgcc ggcaacaaaa ggcggtcgct caaccccgcg
     2341 cttttgccat aatcacccct ttgggtaaac cacggataat cgctgcgtag ggcataggtg
     2401 gaaatttcgt tggcaaaatg ccccaacatt ccttgattag acagccacgc cgtccgaaaa
     2461 cccgcctgct tcgccaagct gacgatgtta ttgttcggtt ctcccggcag ccccaaagtc
     2521 tgcggcagcg aaagattcgt cgcgtgggcg gtcgattggt aaccgtttat caacagccct
     2581 ttggtctgac tcaaaaaagg cgtatcgggc aatgggaaac cgtaaacatt catataatcc
     2641 gaacgcgcgc tttcaccgat aaccacaaca taatttttat acttgggcgc aacatgacgg
     2701 atatgccatg ttgacgcttt ttttgctgct tccaaaatgt gggcgcgctt ggcggcatat
     2761 tgtgccggcg cggaagccaa atcgtaatac aggtcgaaaa tattcaacaa caggccggca
     2821 tcaggttctc gcaaatcttt atcgctggcg attttatcca tcaccgcgca ggacaaaatc
     2881 aaagtcaata atatagtcag ccatattttg ctgcggcgtt tatagttttt tacgtcagca
     2941 aatacccccc ccgatacaca atatctccaa actgtcaagc caaaaatgaa aaataatgcc
     3001 tgcacaaaat aaagcgaccc gggaagattg ccgacaaatt cacgcgcctc ggcaggattg
     3061 ctttccaata tcgaaccgac tatctgataa gacggcgcac catacagcca gccgaccggc
     3121 aaatataggg cggttgtgcc gacgtaaatc agtaaaacaa ctgaagaaac gcgcgggaaa
     3181 ccgcgtgcca ataataataa aaatacaacc gaagccaaag cacccacggc agaataacgg
     3241 tagccgtatt catattccaa gtgataacct gatgcgatgg ccgcgccaaa acaaaaggct
     3301 aaaagcgcgc aaatgcccaa tgtatttttt aatgtctgat ccatattttt tattcgggcg
     3361 gattgtttca tacgatgccg tccgaatatc ccattattta cgagttaaca aagcctgtcc
     3421 gacgatttca agatcggaaa aacggtgctt cacgccttgt acatcctgat agttttcatg
     3481 ccctttgccg gcaatcagga tgatgtcgtt tgcggcggct tgttcaaccg cataacggat
     3541 ggcggcggca cggtcggctt cgacgcattc gggcgcggga acggcaggca ggatgtcgtt
     3601 gatgatgtcg tgcggatttt ccaaacgcgg attgtcgctg gtgacgacga ctttatccgc
     3661 gccctgtacg gctgccgcgc ccatcagcgg gcgtttgccg cgatcgcggt taccgccgca
     3721 accgaatacg caccacaaag ccgcaccctg cggtttgatt tcctgcaagg tggcgagtgc
     3781 tttttccaat gcgtcgggcg tgtgggcata atcgacaacg accaaaggtt tgccgctgtt
     3841 catgatgcag tccatgcgcc ctgaagcggg acggattttt gccagcacat ccaatacatt
     3901 atcaagcgga tagccgttgg cgcacagcaa ggcgatgcag gcggcgaggt tttgcgcgtt
     3961 gaaccgtccg agcaggcgcg tgtggcattt cccttcgccc cacggggttc ggaatacggc
     4021 ttctatgccg tctgaagagg cggtaaagtc ggtaatgcgg atgtcggcgt gttcgctgaa
     4081 gccgtaactg taaacggcca aatcggggca gtcttttttc agacggccta tgagttctgc
     4141 gccgtatccg tcatctacat tgataacggc gtgtttcaag ccatgccagt aaaacaggcg
     4201 cgacttgatg gcaccgtagg cttccatcgt gccgtggtag tcgaggtggt cgcgggtgag
     4261 gttggtaaag attgcgctgc ggaatgacac gccgttgacg cgcgactggt caagcccgtg
     4321 gctggagact tccatcgcgg cgactgttgc gccttgttga cggaaacggt agagcagggt
     4381 ttggacatcg acgggggcgg gtgtggtatg cgtggtttct tccaatgcac cccaaaagcc
     4441 gttgccgacc gtgccgacaa tggcggtttt ttcgcccaac aaatcggcag cttgcgccag
     4501 ccattgcgtg atggaggttt tgccgttggt tccggttacg ccccagactt tgagaccgtc
     4561 tgaaacgttg ccgtaaactt gcgccgccaa tatgccggca cggtgtttca aatctttgat
     4621 gccttgattg gggactttcc attcgggatt ccacgcaaat ttgccgtcgt cgtcccaaaa
     4681 aacaaaagcc gcgccgttgg caacggcggc gggggtataa ctgcgtccgt cggcatattc
     4741 gcccggacag gcaacgaaaa tatcgccttg tttgatttgg cggctgtctg aatgcaacaa
     4801 acgccctgcc gcgtttgcac acgacagggt cgggatgccg gtttcagcca aaggggttaa
     4861 cttgctgaac ataaaacaat ctcgttgata ctcggattaa gacggtgttt tgacggctgc
     4921 ggcggtcagt ggcttggtcg gggaaatgcc caagatgttc aggctgccgc ccataatttt
     4981 tttgaagggc ggccctgcca ctacgccgcc gtaataaccg tgggcagtcg gttcgtcaat
     5041 ggttaccgcc acaatcacac gggggttttt ggcgggggca aaaccgataa aggtagcgat
     5101 gtgtttgttg tcggcataac gcccgttgac gaacttgcgc gccgtgccgg ttttcgcgcc
     5161 gacatcgaaa ccgtccaccg cacccgccgt accggtgccg cccggctcgg tcacggaaac
     5221 catcagattg cgtacctcgc gcgcggtcga ttctttgaat atgcgtttgc cttgcggcgc
     5281 aaccgcctgt ttttcaaagc tgaccggcag caaaacgccg tcgtgcgtca gtgcggtata
     5341 ggcgcgcgcc aattgcagca ggctcaattg caggccgtaa ccgaaagaca tcgtcgcctg
     5401 ttcgatgggc cgccacctgc gccaatttct caacaaacct gcagtttcgc ccggaaagcc
     5461 cgagtgcata cgcacaccga tgcccaactc atgatagaag tcatacattt cttcggcacc
     5521 gaaacgcgca gacagtttgc ttgtgccgac gttggacgat ttctgcatga tgccgcgcac
     5581 atccaaagag gggtaaacat gggtatcgcg cacgggagac ggtccgattt tataaggctg
     5641 cgtattcagc cgttcgttca aatcggtttt gcccgcatcc aatgctttcg caatcacaaa
     5701 cggtttgatt gccgaaccgg gttcgatcat atcggttacg gcacggttgc gccgctgttc
     5761 gctgtctgcc cggccgggcc tgttgggatc gtaggcgggc gtattggcca aggcgaggat
     5821 ttcccccgtg cgggcatcca aaaccaccac cgttccggct tttgcctgat ggtattcgac
     5881 cgccttgttc aactcttcat aggccaaggt ctgaatcctc tgatcgaggg aaaggatgat
     5941 gtctttgccg tttttcgggg ctttattgcg cggggagtcc aagctgtcca caatattgcc
     6001 ctgccggtcc cgcaaaacga cttccgcgcc gtcttcgcca tgcaggctgt cttcaagcga
     6061 aagttccaaa ccttcctgac ctttgccgtc aatatcggta aatccgatga cgtgtgcaaa
     6121 caggttgccc atcgggtaat ggcgttttaa ttctttttca aatacaaagt tttccaaacc
     6181 caaggctttg acctcttcgg caaccttggg atcgagctgc cgcttaatcc agataaacga
     6241 cttgcctttc tgttcgagct tgttcctcaa aacatcaacc ggcacatcga caagctcgga
     6301 caggcgttcc aattgtgcgg cagacggcat ttccttcatc tctttaggca cggcaaacag
     6361 ggactccgtc ggcgcactca acgccaaaac cgcaccgttc cggtccgaaa ccgtaccgcg
     6421 tgtagccggc aatgtttgag tccgcacaat ccggttgtcg ccctgttctt tcaaaaagtt
     6481 atacgttacc gtctgcagat acagtccgcg agcaatcaga ccggcaaaca agaccgctat
     6541 tgccatcagg acgaagctga tccgtccgtt actggtcatc ggctttttga cctgctcttc
     6601 tttgggcagc atccgaggct tatattcgct cttaatcaac atttttactt ctcgttatta
     6661 ttatcctgac gcaggaatcc gattccggca cacaggctgc ttctatcttt gatgcgccac
     6721 cataaaggta ttgcccgaaa ccggcggatg gaggttttgt ttttctgccg ccgccctgat
     6781 cgcttcgtgg ttcgccaaac gcgcctgttg cagcctcatt tgcgcataat cctgctccaa
     6841 ggcgatttcc tgttttttcg ccttgtccaa agctgtgaag ttgagcctgt actggttttg
     6901 ctgcatcaca acggaaaaag cggaaacgca caccgcaagc agcagaagga aattcaattt
     6961 gttcattgcc attcagacgt ttttctctgt gattgttccg gtatcgaacc ggcagtccgc
     7021 tccgccacac gcaaaaccgc acttctcgcc ctcggattgg cggcaatttc cgcctcaccc
     7081 ggctttaatg ccctgcccac gattttcagg ggcagctcgg gcaaatccgc ttccctgacc
     7141 gccgcccagc gcggcagggg cgcgtgttgc gaatattttt tgacaaactg cttcacaatg
     7201 cggtcttcca acgaatggaa agcaatgacc gccaaacgtc cgccctcttt cagacgacac
     7261 atgacctgcg gcaatactgc ccctacttct tcaagctcgc ggttaataaa gatgcggacc
     7321 gcctggaagg tgcgcgtcgc aggatcctgc ccccgctcgc gagtacggac gttttgtgcc
     7381 acgatctgcg ccagcttgcg ggttgtatcg attggacttt ccgcccgttg cgcaacaatg
     7441 gcgcgcgcaa tctggcggct aaaccgctct tcaccataat tcttgattac ctcgtgcaaa
     7501 tcctgttccg acgcaaccgc tatccactct gcggcagaca taccgcgcgt cgtatccata
     7561 cgcatatcca aaggggcatc gaaacggaag ctgaaaccgc ggctgccgtc atcgatttgc
     7621 ggggacgaaa tccccaaatc aaacagcgca ccgtccacct tgccgatacc caaaccgtcc
     7681 aatgccgtct gaaacgaagc aaaaccgcca tgcacgacac cgacccgttt gtccgaacgc
     7741 gccagctctt ctgccacagc aatcgcctgc gggtctttgt cgaaaacaat caaccgcccc
     7801 gcatcgccca aacgcgacaa aatcagccgg gaatgccctc ccctgccgaa cgtaccgtcc
     7861 acatagacac cgtcttcgcg cacggcaagc gcatccaccg cctcattcag caagaccgtg
     7921 atatgccggt aactttctgc tccactcaca attgcaaatc cgtctgactc aactggaagg
     7981 caagttcgtc aggatcgtca tccaaagcct gaaccatctc agcctcccac tgctcgcgac
     8041 cccaaagctc caaacggttg gcacgaccga ccaaaacgac ttcacggtcg aaatccaccc
     8101 ttttcctcag tccggcagga agcagcaccc ggccggcgct gtcccattcc aaaatttccg
     8161 cgttatgcag caaaagattt tgaaaccgcc gcaaaacagg gttatccgcc acttttaagt
     8221 ttaaaagttg cgccgcaacc ttttcccact ccgcaacagg gtacatcaac agcttgtgtt
     8281 tcgactcgag cgttaccact acggcaggcg tatagaggcg cgacagaatg tcacggaatt
     8341 tggcaggaac agccaaccgc cccttactgt cgatgcttaa ttcgtgtgcg ccgccgaaca
     8401 tgacatgtcc caagccgaaa tcaaaatcac aagggtaaaa gagacacttt gccccacaat
     8461 tccccaccaa tcgacactat aagaaatttt aaacactcgg tcaaatcagg gcatgaaaac
     8521 tcattaacat atctgaaatt tttattcctt ttaaaaacaa taagataaaa aattacgaca
     8581 acggcacggc gggtgcggta cagagtgacc gaaccaataa acaactatat atgattaatt
     8641 taataatata aacacaatat atagtattaa gataaagcca tgacagcacc cctaccaacg
     8701 tgtaatatgt cgggaaatcc aataaattta cacaagctaa cacttatcat gcccctcccc
     8761 ctcccctctc ccgaagcacg gcaattctcg ctcaaactgc aaaccctcat tgccgaaaaa
     8821 atcggcaaac acggcaactg gattccattt tcacgtttta tggaattggt tttatacgct
     8881 ccgcaatacg gctactacac cggcggcagc cataaaatcg gcaataccgg ggattttatt
     8941 accgcaccga ccctcacctc tctgtttgca cagacactgg cacgccaact tcaagaactt
     9001 ctatctcaaa cggcgggcaa tatctatgaa ttcggcgcgg gaaccggaca gcttgccgcc
     9061 gatttgttgg gcagcatttc ggacggcatc agccgttact atattattga aatatcgccg
     9121 gagctggcag cacgtcagaa aaacctgatt caagcccgcg caccggaagc atctcaaaaa
     9181 gttgtccact tgaccgcact tcccgaagcg tttgacggca tcatcatcgg caacgaagta
     9241 ctcgatgcca tgcctgtcga aatcgtccgt aaaaatgaag gcggctcatt cgagcatgtc
     9301 ggcgtttgcc tagataatga ccgttttacc tattcggcac gaccgctgca cgacttacag
     9361 ctatctgcct tggcttccct ctattttcct caaacagatt atccctacac cagcgaacta
     9421 catccgcaac aatatgcctt tatccgcacc cttgcctcaa gacttgaacg cgggggtatg
     9481 atattcatcg actacggttt tgatgcagcg cagtattacc accctcaacg caatcaaggt
     9541 actctgatcg gacactaccg acatcacgtt atccacaatc cttttgactt catcgggttg
     9601 gccgacctga ccgcgcatgt caactttacc gacattgccc aagccgggac ggatgccgga
     9661 ttagatttga taggttacct tccccaatcc catttcttat tgaacctggg cattaccgag
     9721 ctattggcac agacggggaa aacggattcg gcagcctata tccgtgaagc tgctgccgtt
     9781 cagaaactga ttgaccagca tgaaatgggc gaactgttta aagtcatcgc attcggaaaa
     9841 aatatcggca tcgactgggc aggattccgc ttcggcgaca tctgccacaa actctaaccc
     9901 tcatgccgcc tgaatccgct tcagacgaca taaacttttt aacatttaaa aacagtcaac
     9961 taattcaaaa ttaaaaaata cggcttgtca aaaaaacaga aaaacatata atagtgtctt
    10021 cacgaaacgg cgaattagct cagtcggtta gagcagagga atcataatcc ttgtgtccgg
    10081 ggttcgaatc cctgattcgc caccaaattt tcgggggtat agctcagttg gtagagcgct
    10141 tgcatggcat gcaagaggtc agcggttcga tcccgcttac ctccaccaga taaaaaagca
    10201 cagaccgtaa aaaggtatgt gcttttttat tacctgattg ccgggaaata aagaacaaac
    10261 cactgccttc aaaacaggca atcgacttta aacctatcgc cccgcctgtc ctgattttat
    10321 agtgaattaa atttaaaccg gtacagcgtt ggctcgcctt gccgtactat ctgcggcttc
    10381 gtcgccttgt cctgattttt gttaattcac tatatcagcc cgccagacaa acccgacccg
    10441 aataatgtct tcaggtcggg tttatggttt cattcccaac ttatccagcc tgacagccac
    10501 aatataatga tggcaatacc aaaaacaatg cggtaatagg caaaaggaat ataatttttc
    10561 ttggaaacaa acctcagcaa cgctttgacc gccaccaagc ctgaaacaaa ggcagcaaca
    10621 aagccaatca aaatcaaacc gacatcatgc agggtgaaaa accggtaatg cttcaggaca
    10681 tcataagccg ttgcggcaac catcatcggc acagccaaga aaaacgagaa ttctgtcgca
    10741 gttttccgtt cgattcccca aagcatcccg cccataatcg tactgcccga acgggacgta
    10801 cccggaatca gtgcaaacac ttgggcaacg ccgatcatca aggcatcaat cggacgcaat
    10861 gcatcaacat cggcaatttt aggctctgcc cagctttggc gtttctccac ccacaaaata
    10921 aacaaaccgc ccaaaaccag catgaccgcc acactcaaag gattgaacag atgttcttta
    10981 atctgtttgc cgaacaacag ccccatcacg gcggcaggta taaaagcaat ggcaagattg
    11041 aggacgaagc ggttggcttt ccggtctttt cccacgccat gcaacacatt gctgaaacgc
    11101 tgccggtatt caaacactac cgccaaaact gcaccgagct ggatggcaat ttcaaaaacc
    11161 ttgtgattgc tgtgaaaacc aatcagattg ccgaacacaa tcaaatgccc ggtgctggaa
    11221 atcggtaaaa attcggtaaa accttctacc aagcccatca tcagggcttt caggacaatc
    11281 agaaaatcca ttgcttgcgc ttctttcgga tacgggagtt cggctatttc tgtacagcag
    11341 ggggctgacg cttgcgttct tccctgactt tggcaaccaa ttctttaatc gtatgaacgc
    11401 cgccgtcaaa gccgttattg aagataacgc ggtattttcc gccgacaata acggtcggcg
    11461 tgttgtcaat accgtattgt tctgtcagtt tctgcatttt tgatgctgct gctgcggcct
    11521 cgggagagtc ataaacgcgc atcagttttt taccgtcaaa gcctttttga gacaaagccc
    11581 attttccggc caccgccctg tcttccaaat gaaccttctg ttcgtaaact gctttaaaca
    11641 cagcagggtt tgcctgatat ttcaaacccg acaaattgac ggcggccgcc atcctggcca
    11701 gaccgagcat ttcaggctgc cagaccacgt gctccgtcct caaataggca tcagacggca
    11761 atgccttgcc caatttcaat aacaaaggat cgaaatgatg gcaatgtacg cagaaatagc
    11821 cgaaaaattc caaaacctca attttacccg actgttcttg aggaatgggt ttatccaaca
    11881 caagatagtc ttccctttcc gtcagggcat atgcctgcgc ggacaacact gccgacagca
    11941 gcagcggcaa cagatgtttg agcttcataa ttatttgctt tcgatagaac ggatcaggct
    12001 ggcgacttca tgttttttca actcgtcctg catttttttc accgcatcgg cagacatatt
    12061 gccgctttgc acccggtaaa gcgttttatg tcccgcctga taaccgacca ccttggaaga
    12121 tatgcccaag attgccagtt tggcacgctg cccttccgcg ctccggcggt cggcatacgc
    12181 gcccatttgc agataatgcg ttgcttccgc cttgtcggac gttttcattt tctgcacttc
    12241 tttggcggcg gcactgcgcg ctttttcgat gctgccgctg ttgaggattt gttccggggt
    12301 cggtttgggt gcaacttttt ccttttccgc ctttttctct tcttttgaag cttttttctc
    12361 tgtttcttta gacggtttta ccgcttgttt tttaaccgtt tcggcatctt tcttctgcgc
    12421 tttttccctg acggtttgtt cacgctcttc cgtcagcgct ttcttacgca ctgcctgtcc
    12481 gtccggctct tcccgttccg gctcgcccgc cttttcttca acttcgtcgg ctttatcggc
    12541 agctttttcc gcatccgact gctctgcctc tgtcgcagca tccggttcgg acaaggcgtt
    12601 ttgatcgacc ggttcaggtt ggatgtcttc cttaggctgg tttttcggtt tcaggatttc
    12661 cgtttctgca ggctgcttcg acgaagccgg gattttgaac gcattttgac cgctctggtt
    12721 cagataaaac aaaataccgg caataatgac cgtcgccagt atcaaaccga agaaaaaacc
    12781 ggacagacct tttccggatt gggaaaattt gttcataaac ataccttaat gtgtttcaga
    12841 cggcattaac gccgtttgct tacgggcgga tattctaaca atatcgccat atttgggcaa
    12901 aacctgcttc cattcccgtt cctataaagc acggcggaaa cctatggctt tcatgacgtg
    12961 gcttctgccg acttcttcgt cgcctgccaa atccgccaat gtacgcgcca cgcgcataat
    13021 gcggtggaag ctgcgggcgg aaagggagag tttttccagc aggctgccca atgcttcctg
    13081 cgcttctttt tggatgcggg cggatgtgtc gagttcactg acactcaagg cggcattcac
    13141 tttgccttgc cgtgcgtatt gtttgtctct agcggcgata acgcgttcca aaacggacgc
    13201 gctcctttcc cctgcttcct gctgcatcag ttcggcggcg gacaggctcg ggacttcgat
    13261 ggtcaaatcg atgcggtcga gcagcggccc ggaaatcttg ctgcggtaac gcgcgacgct
    13321 ttcgggcgtg cagcggcagg gtttgacggg atgcccgaga taaccgcacg ggcaggggtt
    13381 catggcggca acaagttgga atttggcagg atagacggct tggcgcgccg cgcgggaaat
    13441 gtggatttcg ccgttttcca acggttcgcg caaaacttcc aaaactttgc ggtcgaactc
    13501 gggcagctcg tccaaaaaca atacgccgtg gtgcgccaat gaaatctcgc ccggacgcgg
    13561 atccgaaccg ccgccgacca tagccgccgc gctggcgctg tgatgcggac tgcggaaagg
    13621 acggttgctg tcgagttgtt gttggtggtt gggcaggagc gaacgcaatg cccaaacttc
    13681 taccaattcg tcttcggtca gcggcggcag gatgccgggc agccgttggg agagcataga
    13741 cttgcccgtt cccggcggac ccatcatcaa aaggctgtgt ccgcctgcgg cagcgatttc
    13801 caaagcaagg cgggcagtgt gctgaccctt gacatcgacg aggtcgagca atttggtgtt
    13861 ttcagacggc atctgaggaa cttgacagtc ggtttgcacc aaaggttcga taccgttcaa
    13921 atgggcggcg acttcgccca aagagcgcgc gccgtaaacg gtaatgccgc gcatcacggc
    13981 ggcttgtcct gcgttttctt caggcaaaac aaatgcacgt tttgcctgca taccctgcca
    14041 cgccatcgcc aacgcgccac gcacggggcg caacagcccc gacagtgcca attcccccgc
    14101 aaactcgtat tccgccagtt tttcgggtgc aacctgcccc gatgcggcaa ggatgccaat
    14161 tgcaatcggc aaatcgaaac gccccgactc tttgggcagg tcggcggggg cgaggttgac
    14221 ggtaattttt ttggcgggga attcaaaacc gctttgaata atggcggcac ggacgcggtc
    14281 gcgactttcc tttacttccg tatcgggcag cccgacgatg ttgaaatgcg gcaggccgtt
    14341 ggcaaggtgg gcttccactt cgaccaacgg cgcattcata ccgctcaagg cgcggctgta
    14401 aaccaaggca agcgacatat ttcagacggc cttattcgcc ggcttcggtt tgctgcctga
    14461 tttcggcgac ggcttcttcg gcagcggctt cagccgcttc caatgctgcc cgttcgggat
    14521 tttgcgcggc ttcgagtttt gccaaacgcg cttccaaagc cgccagtttg gtacgagttt
    14581 tgattaaaac ctgctgctgg atgtcgaatt cttcgcgcgt aaccagatcc atacggttga
    14641 acgcgccgcc cagcatcgcc ttaatatttt tttccacatc tttggcaggg ctgttggcga
    14701 tggtttcgct gattttcgag ccgacttcct caaaaagctg cttgccgaac ataatctgta
    14761 tccttcctga acatatcaaa ttcaatcggc tattgtataa ggaaaaatgc cgtctgaaaa
    14821 cgggcggcgg ataatcggca aaacataccg cgcctccttt gcggttgcta aattacacct
    14881 caaaacacct gccgcctgaa aacggatttc atattccgcg caacgccaga ttacaagaca
    14941 ttacaaaaca atatactgtt ttaaatgatt tttccgacgc gcatcgtttc aaactcggct
    15001 ttttaagcca ttaagtgctt tgcaaacaac agaaattggg ttatgctgaa acggattatt
    15061 tacaatttca tatagtttta ttacatatct tattgtgatt gaagataatt tatccgaatc
    15121 cccctttcgg gtatccggat tttccgttgt acttttatta gaaaaacatt tcaggcgcaa
    15181 gttgcttgca atttcaaagc ctgtaattct gaagttttag acgaggaata gcacatgaat
    15241 cccatgtaca ttacttttgc aatctatctg gttgcagtcc ttctcatcgg gcttgccgcc
    15301 tatttttcta cgcgcaattt cgacgattat attttgggcg ggcgcagcct aggcccgttt
    15361 gttaccgcga tgtcggcagg cgcgtccgat atgtccggct ggctgctgat gggtctgccg
    15421 ggcgcgattt acctgagcgg tttgaatgag gcttggattg ccatcggcct cttggtcggc
    15481 gcgtatttca actggctctt ggtggcgggc cgcctgcgcg tgcataccga atacgccaac
    15541 aatgcgctga cgctgccgga ttatttcttc caccgcttcg gcgcgggcgg acacttgatg
    15601 aaagtggttt ccgcactgat tatcctgttc ttcttcacga tttattgcgc ctcgggcatt
    15661 gtggcgggcg caaccctgtt ccaaagcctg tttgaaggta tgacttacaa tcaggcaatg
    15721 tggctgggcg cgggcgcgac catcgcctat accttcttgg gcggcttctt ggcggtcagc
    15781 tggacggata cgttgcaggc ttctttgatg attttcgcgc tgattttaac gccggtaatg
    15841 gtctatctgg gcttgggcgg cgcggaacag atgtctgccg cgattcaaag cgtcgccgca
    15901 ggcacgggca aagaatacgg cagcctgttt gccggtacga ccgtcatcgg catcatttcc
    15961 accgccgcat ggggcttggg ctatttcgga cagccgcaca ttttggcgcg ctttatggcg
    16021 gccgaaagcg cgaaatcgct ggtatccgca cgccgcatcg gcatgacttg gatggcgttg
    16081 tgccttgcgg gcgcggtggc ggtcggttat ttcggcattg cgtatttcgg tgcaaatccc
    16141 gacaaagttt cttctatgag cggcaaccac gaacgcatct tcatcgcgct ttccaccctg
    16201 ctgttcaacc cttggatcgc cggcatcatt ttgagcgcga ttttggcggc ggtgatgtcc
    16261 accctgtcct gccagctttt ggtttgctcc agcgcgatta ccgaagactt ctacaaaggc
    16321 tttttgcgta aaaacgcgca acagtcggaa ctggtatggg tcggccgcct gatggtcttg
    16381 gcgattgccg tgatttccat cctgattgct tccgatccga acagcaaagt attgggactg
    16441 gtgtcttatg cgtgggcagg tttcggtgcg gcgttcggcc cgattgtgat tctgtccgta
    16501 ttgtggaaac gcatcactgc ctacggcgcg ttgtcgggta tggttgcagg tgccttaacc
    16561 gtagtcgtat gggcggaatg gataaaaaaa ccggctcaag cagcaggcga aagcggcttg
    16621 ttgacgatgt acgaaatcgt cccgggcttt attgtttgct taatcattgc cgtgttggtt
    16681 tccctgttca acaaagaacc ttcgcgcgaa atccaaaaac gctttgaaaa agccgacgca
    16741 gattaccgcg ccgcccgata aacccctttc agacggcacg gcatcccggt tcgtgccgtc
    16801 tgaacccgtt tccgggtcaa acacaaataa accttgcctg catacaggcc ttatttgtgt
    16861 tttacccgtt tcattttcaa agaaacggaa gcacctaccc tgcccgcatt tgaagccttg
    16921 tatttcatct gcggatttat tacgatatta ccgtattcag gccgcaccga tgccgcctgc
    16981 cccccgaaaa actttggaga atccaaaaaa tgtttcattt tgcatttccg gcacaaactg
    17041 ccctgcgcca agcgataacc gatgcctacc gccgtaatga aatcgaagcc gtacaggata
    17101 tgttgcaacg tgcacagatg agcgacgaag agcgcaacgc cgcctccgag cttgcccgcc
    17161 gtttggttac ccaagtccgc gccggccgca ccaaagccgg cggcgtagat gcgctgatgc
    17221 acgagttttc actctccagc gaagaaggca tcgcgctgat gtgtctggca gaagccctgc
    17281 tgcgtatccc cgacaacgcc acgcgcgacc gcctgattgc cgacaagatt tcagacggca
    17341 actggaaaag ccatttgaac aacagccctt ccctcttcgt caacgccgcc gcctggggcc
    17401 tgctgattac cggcaaactg accgccacaa acgacagaca aatgagttcc gcactcagcc
    17461 gcctgatcag caaaggcggc gcaccgctca tccgccaagg cgtaaattac gccatgcggc
    17521 ttctgggcaa acagttcgta accggacaga ccattgaaga agccctgcaa aacggcaaag
    17581 aacgcgaaaa aatgggctac cgcttctcct tcgatatgtt gggcgaagcc gcctacaccc
    17641 aagccgatgc cgaccgctac taccgcgact atgtcgaagc catccacgcc atcggcaaag
    17701 atgcggcagg acaaggcgtt tacgaaggca acggcatttc cgtcaaactt tccgccatcc
    17761 atccgcgcta ctcgcgcgcc caacacggcc gtgtgatggg cgaactgttg ccgcgcctga
    17821 aagagctgtt ccttttgggt aaaaaatacg atatcggtat caacatcgat gccgaagaag
    17881 ccaaccgtct ggagctgtct ttggatttga tggaggcttt ggtttcagac cctgacttgg
    17941 ctggctacaa aggtatcggt ttcgttgtcc aagcctacca aaaacgttgt ccgttcgtta
    18001 tcgactacct gattgaccta gcccgccgca acaaccaaaa actgatgatc cgcctcgtca
    18061 aaggcgcgta ttgggacagc gaaatcaaat gggcgcaagt ggacggcttg aacggctatc
    18121 cgacctacac ccgcaaagtc cacaccgaca tctcctacct cgcctgcgca cgcaaactct
    18181 tggatgcgca agatgccgtg ttcccacaat ttgctaccca caatgcctac actttgggcg
    18241 caatctacca aatgggtaaa ggcaaagatt tcgaacacca atgtctgcac ggcatgggcg
    18301 aaaccctgta cgaccaagtg gtcggcccgc aaaacttagg ccgccgcgta cgcgtatatg
    18361 ccccggtcgg tacacatgaa accctgcttg cctacttggt acgccgcctg ttggaaaacg
    18421 gtgcgaactc ttctttcgtg aaccaaatcg ttgacgaaaa catcagcatc gaccgcctga
    18481 ttaagagccc gttcgacacc atcgccgaac aaggcatcca cctgcacaac gccctgccgc
    18541 tgccgcgcga tttgtacggc aaatgccgtc tgaactcgca aggcgtggac ttgagcaacg
    18601 aaaacgtatt gcagcagctt caagaacaga tgaacaaagc cgccgcgcaa gacttccatg
    18661 ccgcatccat cgtcaacggc aaagcccgcg atgtcggcga agcgcaaccg attaaaaacc
    18721 ctgccgacca cgacgacatc gtcggcacag tcagctttgc cgatgccgcg cttgcccaag
    18781 aagcggttgg tgcagccgtt gccgcgttcc ccgaatggag tgcgacacct gccgccgaac
    18841 gcgccgcctg cctgcgccgt ttcgccgacc tgctcgaaca gcacaccccc gcgctgatga
    18901 tgcttgccgt gcgcgaagcg ggcaaaacgc tgaacaacgc cattgccgaa gtgcgcgaag
    18961 ccgtcgattt ctgccgctac tacgcaaacg aagccgaaca caccctgccc aaagatgccg
    19021 aagccgtcgg cgcgattgtc gccatcagcc cgtggaactt cccgctcgcc atctttaccg
    19081 gcgaagtcgt gtccgcattg gcggcaggta acaccgtcat cgccaaacct gccgaacaaa
    19141 ccagcctgat tgccggttac gccgtttccc tgatgcatca agccggtatt ccaacttctg
    19201 cgctgcaact cgtactcggc gcaggtgatg tcggctctgc cctgaccggc gacacccgca
    19261 tcggcggcgt catcttcacc ggttctaccg aagtagcacg cctgattaac aaagcactgt
    19321 ccaaacgcga cgacaaccct gtcctgattg ccgagaccgg tggtcaaaac gcgatgattg
    19381 tggactctac cgccctgccg gaacaagtct gcctcgacgt tttgaactct gccttcgaca
    19441 gcgcaggcca acgttgttcc gctctgcgta tcttatgcgt tcaagaagat gttgccgata
    19501 aaatggtcaa catcatcaaa ggcgcaatgg acgaattggt tgtcggcaaa ccgacccaac
    19561 tgaccacaga catcggccct gtcatcgatg ctgaagccca acaaaacctg ttggtccaca
    19621 tcaacaaaat gaaaggcgtt gccaagtctt accacgaagt caaaaccgct gccgatgtcg
    19681 attccgaaaa atccacgttc gtccgcccca tcctgtttga attgaacaac ctcaacgaac
    19741 tgcaacgcga agtcttcggt cccgtcctgc acgtcgtccg ctaccgcgcc gacgaactcg
    19801 acagcgtcat cgaccaaatc aacagcaaag gctacgccct gacccacggc gtacacagcc
    19861 gcatcgaagg cacagtacgc cacatccgca gccgcatcga agccggcaac gtttacgtca
    19921 accgcaacat cgtcggcgca gtcgtcggcg tacagccctt cggcggacac ggtctgtccg
    19981 gcacaggtcc caaagcaggc ggttcgttct acctgcaaaa actgacccgc gccgacgaat
    20041 gggttgcccc gaccctgagc caaatcggac aggcagacga agccgcgctc aaacgcctcg
    20101 aagcactggt tcacaaacta ccgttcaacg ccgaagagaa aaaagccgca gcggccgctt
    20161 tgggacacgc ccgcatccgc accctgcgcc gtgccgaaac cgtccttacc ggaccgaccg
    20221 gcgagcgcaa cagcatctca tggcacgcgc ccaaacgcgt ttggatacac ggcggcaaca
    20281 cggttcaagc ctttgccgca ctgaccgaac ttgccgcctc cggcgtacag gcagtggtcg
    20341 aacccgacag cccgctggct tcctacaccg ccgacctgga aggtctgctg ctggtcaacg
    20401 acaaacccga aaccgccggc atcagccacg ttgccgccct gtcgcctttg gacagcgcgc
    20461 gcaaacagga acttgccgcc cacgacggcg cactcatccg catcctccct tcggaaaacg
    20521 gactcgacat cctgcaagtg tttgaagaaa tctcttgcag cgtcaacacc acagccgccg
    20581 gcggcaacgc cagcctgatg gcggttgccg actgatttta ccgaaatccc cgagcgcggc
    20641 ccgtgaacca atgccgtctg aaaacctttc agacggcatt tttata
//
LOCUS       DAWGNT010000022        19798 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.022, whole genome shotgun sequence.
ACCESSION   DAWGNT010000022 DAWGNT010000000
VERSION     DAWGNT010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19798
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.022"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(108..1250)
                     /locus_tag="WHR98_000554"
     CDS             complement(108..1250)
                     /locus_tag="WHR98_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEZ2307271.1"
                     /translation="MKKSVLAVLAALSLAACGGSEKNAVQPQADAASAANAEAAATDT
                     LNIYNWSNYVDESTVEDFKKANNLKLTYDLYENNETLEAKMLTGKSGYDLVVPGIAFL
                     PRQIEAGAYQKVNKDLIPNYKNIDPELLKMLETADPGNQYAVPYFSGVNTIAITAKGK
                     ELLGGKLPENGWDLLFKPEYTHKLKSCGIALWDTPSEMFPILLNYLGKDPKGSNPEDL
                     KAAAEVLKSIRPDVKRFSPSIIDELARGDICLAAGNGGDLNLAKARSEEVKNNVGIEV
                     LNPKGMGFWIESWLIPADAKNVANAHKYINYTLDPEIAAKNGIAVTFAPASKPAREKM
                     PAELVNTRSIFPNEQDMKDGFVMPQMSTDAKKLSVSLWQKIKVGTN"
     gene            1554..1817
                     /gene="rpsT"
                     /locus_tag="WHR98_000555"
     CDS             1554..1817
                     /gene="rpsT"
                     /locus_tag="WHR98_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEZ2307272.1"
                     /translation="MANSAQARKRARQSVKQRAHNASLRTAFRTAVKKVLKAVEAGDK
                     AAAQAVYQESVKVIDRIADKGVFHKNKAARHKSRLSAKVKALA"
     gene            1977..3125
                     /locus_tag="WHR98_000556"
     CDS             1977..3125
                     /locus_tag="WHR98_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEZ2307273.1"
                     /translation="MPTMGAEMNTRNMRYILLTGLLPMASAFGETALQCAALTDNVTR
                     LACYDRIFAAQLPSSAGQEGQESKAVLNLTETVRSSLDKGEAVIVVEKGGDALPADSA
                     GETADIYTPLSLMYDLDKNDLRGLLGVREHNPMYLMPLWYNNSPNYAPGSPTRGTTVQ
                     EKFGQQKRAETKLQVSFKSKIAEDLFKTRADLWFGYTQRSDWQIYNQGRKSAPFRNTD
                     YKPEIFLTQPVKADLPFGGRLRMLGAGFVHQSNGQSRPESRSWNRIYAMAGMEWGKLT
                     VIPRVWVRAFDQSGDKNDNPDIADYMGYGDVKLQYRLNDRQNVYSVLRYNPKTGYGAI
                     EAAYTFPIKGKLKGVVRGFHGYGESLIDYNHKQNGIGIGLMFNDLDGI"
     gene            3268..3969
                     /locus_tag="WHR98_000557"
     CDS             3268..3969
                     /locus_tag="WHR98_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HEZ2307274.1"
                     /translation="MTEPAAEGGKAAKALKKYLITGILVWLPIAVTVWVVSYIVSASD
                     QLVNLLPKQWRPQYVLGFNIPGLGVIVAIAVLFVTGLFAANVLGRQILAAWDSLLGRI
                     PVVKSIYSSVKKVSESLLSDSSRSFKTPVLVPFPQSGIWTIAFVSGQVSNAVKAALPK
                     DGDYLSVYVPTTPNPTGGYYIMVKKSDVRELDMSVDEALKYVISLGMVIPDDLPVKTL
                     AGPMPPEKADLPEQQ"
     gene            4027..5835
                     /gene="aspS"
                     /locus_tag="WHR98_000558"
     CDS             4027..5835
                     /gene="aspS"
                     /locus_tag="WHR98_000558"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEZ2307275.1"
                     /translation="MRTNYCGLISEQYLDQTVTVKGWVHRRRDHGGVIFIDLRDREGI
                     VQVVIDPDTPEAFAAADSARNEYVLSITGRVRNRPEGTTNDKMISGKIEILAKEIEVL
                     NAAATPPFQIDDENISENVRLTNRVIDLRRPVMQRNLRLRYQVAMGVRRYLDAQGFID
                     IETPMLTRSTPEGARDYLVPSRVHPGEFFALPQSPQLFKQLLMVAGFDRYYQITKCFR
                     DEDLRADRQPEFTQIDLETSFLNEDEIMDITEGMAKQVFKDALGVDLGGFPRMPYAEA
                     MFYYGSDKPDMRIGLKFTELTDLMKTEEFKVFRGAADMKGGRVVALRVPNGAKFSRKE
                     IDEYTKFVGIYGAKGLAYIKVNDVGNLSNGEDSGLQSPIVKFLSENALKEIIERTGAE
                     NGDIIFFGADKAKVVNEAIGALRIKVGLEHGKDNGYFTDEWKPLWVVDFPMFEYDEEA
                     DRYVAVHHPFTAPKEGHEDLMVSDPANCLARAYDMVLNGWEIGGGSIRIHRADVQEKV
                     FAALKISPEEQQEKFGFLLDNLKFGAPPHGGLAFGLDRLVTLMTGAESIRDVIAFPKT
                     QRAQCLLTNAPNSVDDKQLRELSLRLRQKVAETKEA"
     gene            5986..6270
                     /locus_tag="WHR98_000559"
     CDS             5986..6270
                     /locus_tag="WHR98_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEZ2307276.1"
                     /translation="MKKLLLAAVVSLSAATAFAGDSAERQIYGDPHFEQNRTKAVKML
                     EQRGYQVHDVDADDHWGKPVLEVEAYKDGREYDIVLSYPDLKIIKEQLDR"
     gene            6437..8329
                     /gene="speA"
                     /locus_tag="WHR98_000560"
     CDS             6437..8329
                     /gene="speA"
                     /locus_tag="WHR98_000560"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEZ2307277.1"
                     /translation="MPILTIREVCNINHWGIGYYDVDDSGEIIVCPNPAQHNQTVSLQ
                     KLTEAVQQKHQARLPVLFCFPQILEHRLRDINRAFQTAREECGYKGGYCLVYPIKVNQ
                     HRRVIESLMSSGQPHGLEAGSKAELMAVLAHAGTRQTLIVCNGYKDREYIRFALMGEK
                     LGHQVYLVIEKLSEIQMVLEEAEKLGIKPRLGVRARLASQGSGKWQSSGGEKSKFGLS
                     ASQVLQLVDILKQKNRLDCLQLLHFHLGSQLGNIRDVATGVHESARFYVELHKLGVNI
                     RCFDVGGGLGVDYEGNRTQSDCSVNYSLNEYAATVVWGISQACLEHGLPHPTIITESG
                     RGITAHHAVLVANVIGVERYKPRRLDAPSPEAPRVLHSMWETWTDISASREKRSLRSW
                     IHEGQFDLADVHNQYNVGLLSLAQRAWAEQLYLNICHEVGELFNEKHRSHRTIIDELQ
                     ERFADKLYVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDH
                     YIDGDGIAGTMPMPDYPEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVVVGEDGQ
                     FTVIDYDEGNTVADMLEYVYQDPKELMKRYREQIEHSDLPASQAMSFLKELEAGLNGY
                     TYLEDE"
     gene            8428..9351
                     /gene="speB"
                     /locus_tag="WHR98_000561"
     CDS             8428..9351
                     /gene="speB"
                     /locus_tag="WHR98_000561"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HEZ2307278.1"
                     /translation="MQYSTLAGQTDNSLVSNNFGFLRLPLNFMPYESHADWVITGVPY
                     DMAVSGRSGARFGPEAIRRASVNLAWEHRRFPWTFDVRERLNIIDCGDLVFSFGDSRD
                     FVEKMEAHAGKLLSSGKRCLSLGGDHFITLPLLRAHARYFGKLALIHFDAHTDTYDNG
                     SEYDHGTMFYTAPKEGLIDPSRSVQIGIRTEHSKKLPFTVLSAPKVNEDSVEETVRKI
                     KETVGNMPVYLTFDIDCLDPSFAPGTGTPVCGGLSSDRALKILRGLTDLDIVGMDVVE
                     VAPSYDQSDITALAGATIALEMLYLQGAKKD"
     gene            9549..11015
                     /locus_tag="WHR98_000562"
     CDS             9549..11015
                     /locus_tag="WHR98_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HEZ2307279.1"
                     /translation="MMKLGFKPIPLAIAAVLCALVLALPVPDGVKPQAWTLLAMFVGV
                     IAAIIGKAMPLGALSIIAVGLVAVTGVTADKPGAAMSDALSAFANPLIWLIAIAVMIS
                     RGLLKTGLGMRIGYLFIAVFGRKTLGIGYSLALSELLLAPVTPSNTARGGGIIHPIMQ
                     SIAGSYGSNPAKGTEGKMGKYLALVNYHSNPISSAMFITATAPNPLIVNLIAENLGSS
                     FRLSWGAWAWAMAVPGVIAFFVMPLILYFLYPPEIKETPNAVQFAKDRLREMGKMSAD
                     EIIMAVIFGILLLLWADVPALITGNHAFSINATATAFIGLSLLLLSGVLTWDDVLKEK
                     SAWDTIIWFGALIMMAAFLNKLGLIKWFSGVLAESVGGLGVSGTAAGVILVLAYMYAH
                     YMFASTTAHITAMFGAFLAAAVSLNAPAMPTALMMAAASNIMMTLTHYATGTSPVIFG
                     SGYTTMGEWWKAGFIMSVVNFLIFFVIGSIWWKVLGYW"
     gene            complement(11222..12298)
                     /locus_tag="WHR98_000563"
     CDS             complement(11222..12298)
                     /locus_tag="WHR98_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HEZ2307280.1"
                     /translation="MICRKPIGHTPYFDMNKTICRTAALLISGFSYANTVIPDVSPVA
                     QGQHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKS
                     IQKERGDGVKTIAAGPDNPLGPVFVRLGDPKLGLGIHGTNAPASVPGVRSHGCVRMKS
                     PDALEFAKTIASGSPASVIYQMAGLNEDADRNLWLAAFRDPYGKNNLDIASLKKSIAQ
                     WAKTQGKTIAPEKVDAVLKDRTGSAVCLTCGKNGKMKMPLKSLAWIQGSSSYSQAEVI
                     EQTEETNSAEISETRTPEVPDVHTPEAQPHLNTQSDGTPTAYTEPAADSSPQVETPDQ
                     AASEPVDVLFSIDVIRQGNLRLGN"
     gene            12521..13663
                     /gene="bioF"
                     /locus_tag="WHR98_000564"
     CDS             12521..13663
                     /gene="bioF"
                     /locus_tag="WHR98_000564"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HEZ2307281.1"
                     /translation="MKVFKQQLEQLGAQNQYRSIPDLIHQGRYITRENCKMLNMSSND
                     YLGLASDENLRRSFLQQYGGNFPSFTSSSSRLLTGNFPIYTDLEELVAQRFQRESALL
                     FNSGYHANLGILPALTTTKSLILADKFVHASMIDGIRLSRCAFSRYRHNDYEHLKNLL
                     EKNVGKFDRTFIVTESVFSMDGDVADLKQLVQLKKQFPNTYLYVDEAHAIGVYGQNGL
                     GIAERDNLIAEIDLLVGTFGKALASVGAYAVCNQVLKECLINQMRPLIFSTALPPFNV
                     AWTYFIFERLPQFSKERSHLEQLSAFLRREVAHRTQIMPSQTCIVPYILGGNEAALAK
                     AEYLQRQGYYCLPIRPPTVPKNTSRIRLSLTADMTTDEVRQFAVCL"
     gene            13673..14320
                     /locus_tag="WHR98_000565"
     CDS             13673..14320
                     /locus_tag="WHR98_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HEZ2307282.1"
                     /translation="MKTKFYNHQGGHLILYFAGWGTPPDAVNHLILPENHDLLICYDY
                     QDLNLDFDFSAYRHIRLVAWSMGVWAAERALQGIRLKSATAVNGTGLPCDDNFGIPCT
                     VFKGTLENLTENTRLKFERRMCGDKASFEDYQQFPARPFGEIHQELIALFAMIGQDRR
                     TDLIRWTNALVGSGDKIFMPANQHRYWTPRCTVREIDVGHYLFSRFTHWSALWNH"
     gene            14308..15090
                     /gene="bioC"
                     /locus_tag="WHR98_000566"
     CDS             14308..15090
                     /gene="bioC"
                     /locus_tag="WHR98_000566"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HEZ2307283.1"
                     /translation="MESLTAINKSRIRQAFQKALNDYDRHALIQQKMTINLMTHLQDY
                     LPDMPLENVLELGCGSGMLSALLQKQISANYWLFNDLCNVQPQLAEKLPQSFDFYCGD
                     AENFPFQRQFDLIASASAVQWFHQPDAFITHCKTGLKTNGLLAVATFGKDNLKEVRQI
                     TNIGLNYPTLSQWQAWLAKDFELLWCEDFTVILDFDTPSDVLKHLKYTGVTATNQKNW
                     TRKNLNGFIGDYLSAFSMPSGKVHLTYHPLFFIARYSAAGRQ"
     gene            15310..16746
                     /locus_tag="WHR98_000567"
     CDS             15310..16746
                     /locus_tag="WHR98_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEZ2307284.1"
                     /translation="MENSLIIGLALAVLLMLLVMRAKQGKKTPKRKSQGVGNTQGQTP
                     GSNDSDWVDQIGQSVSDGTQPDWSWNESAETASAAVSAQEVDPLTEYQVYKQFGYQGK
                     AAESLAAYLDGIPDGEAKPENLIRELLDINLEVGDVDVLADNLQKYGKLIPSELLAKY
                     IEQALQRDSNHLRIRVLAEEGLGWGTQEIEKRAEGGSATAASASPPPDAGGKAYEAEE
                     IKRIPIVRGKKDVSGISQEEIGAIAGLVRADQGAKILKDKVSYETASKQYDRAIQTSE
                     KPANLIIDALKLDYQHADIDRFAGHLWKLYQTLGNYGRQVKERMLGWGYSLGYHEVFD
                     DLEKGPNDRQIKDIGMGHGYLPKNIQKFKSQHRDLVLQDSSLINTGSSPADDAVKEVE
                     SLLMYGQIEAAMDVLEQAVLKYPDESQLYITLIDIYERTEDWDRLGQFLRVLRERADR
                     LPEEVVMLMSRLLQRMNQNIKKIKRYGK"
     gene            16749..17846
                     /locus_tag="WHR98_000568"
     CDS             16749..17846
                     /locus_tag="WHR98_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEZ2307285.1"
                     /translation="MEVQLPKIKTVRVMLAGMTAQQESVFKMAFKMHNTTRYETVSPS
                     DGSAVPDLVLADTDAEGGFELWKELAERYKDIPVAVCSEKVPDSEVPYLPKPIRFETL
                     FPMLRKLLQGENVYGKSFIAPADRSAKNNGNVQRTVTIRQFNPNKGLLGALRFAEKNR
                     QDIAILHGNKPVLIVFPSIQRVLLTESVQKLEELCKDENLQVSCKTVPDNPQWREKAK
                     VGIMSCMWQFSIWTVQGRLIYPISPDTPFTLKSWPNLTRLANVPGSIRLSAFLTKASV
                     NLNVLYKVMPLNLNDILNYLAATYTTGFLSVDLKTVSQQAYSDMADKINIGADSASDS
                     EMMKKAEKITTSSQSQSRGLLQRLMKKLLGS"
     gene            17858..18394
                     /locus_tag="WHR98_000569"
     CDS             17858..18394
                     /locus_tag="WHR98_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HEZ2307286.1"
                     /translation="MRENKIIFTGPVGVGKTTAIAAISDEALVQTDASASDMTLDRKR
                     NTTVAMDYGAISLDEDTKVHLYGTPGQERFNFMWEILSQGSMGLVLLLDNARTNPLKD
                     LEFFLHSFRGLLEKAPVVVGITKMDIRSQPGIDVYHKYLAKHNLNVPVFEIDARKEDD
                     VKQLVSAMLFSIDPGLEV"
     gene            18396..19040
                     /locus_tag="WHR98_000570"
     CDS             18396..19040
                     /locus_tag="WHR98_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HEZ2307287.1"
                     /translation="MESTLSLQANLYPRLTPAGAFYAVSSDAPSAGKTLLHSLLKADA
                     DEMVSSEKLLTWADTADIDTALNLLYRLQKLEFLYGDENGHSDGINLSDEQLPFLMEQ
                     LSGSGKALLVDRNGLYLANANFHHEAAEELGLLAAEVAQMEKKYRLLIKNNLYINNNA
                     WGVCDPSGQSELTFFPLYIGSTKFILVIGGIPDLGKEAFVTLVRILYRRYSNRV"
     gene            19063..19422
                     /locus_tag="WHR98_000571"
     CDS             19063..19422
                     /locus_tag="WHR98_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="roadblock/LC7 domain-containing protein"
                     /protein_id="HEZ2307288.1"
                     /translation="MQQLLISILEDLNNTSTDIIASAVISTDGLPMATMLPSHLNSDR
                     VGAISATLLALGSRSVQELACGELEQVMIKGKSGYILLSQAGKDAVLVLVAKETGRLG
                     LILLDAKRAARHIAEAI"
     gene            19515..19590
                     /locus_tag="WHR98_000572"
     tRNA            19515..19590
                     /locus_tag="WHR98_000572"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:19548..19550,aa:Asn,seq:gtt)
BASE COUNT         4987 a         4597 c         5113 g         5101 t
ORIGIN      
        1 gtcgccttgt cctgattttt gttaatccac tatataaata tttctatttc aatccaatat
       61 aaaatgccgt ccgaacgatg ttcggacggc atttttaatg cttcaaatca gttggtgccg
      121 actttgattt tctgccacag gctgaccgac agttttttcg catccgtgct catttgcggc
      181 atcacgaaac cgtctttcat atcctgctcg ttcgggaaga tggaacgggt gtttaccagt
      241 tcggcaggca ttttttcgcg cgccggtttg ctggcggggg cgaaggttac ggcgatgccg
      301 tttttcgccg cgatttcggg gtcgagcgtg tagttgatgt atttgtgggc attggcgacg
      361 tttttcgcat cggccggaat caaccaagac tcaatccaga agcccatgcc tttcggattc
      421 aacacttcga tgccgacgtt gtttttcact tcttcggaac gtgctttcgc caagttcaaa
      481 tcgccgccgt tgcctgccgc caggcagatg tcgccgcgcg ccagctcgtc gatgatggac
      541 gggctgaaac gtttgacatc cggacggata gacttcaaca cttccgccgc cgccttcaaa
      601 tcttcaggat tcgagccttt ggggtctttg cccaagtagt tcagcaaaat cgggaacatt
      661 tcgctcgggg tgtcccacag ggcgatgccg caggatttca gcttgtgggt gtattcgggt
      721 ttgaacagca aatcccagcc gttttcgggc agcttgccgc ccaaaagctc tttgcctttc
      781 gccgtaatcg caatcgtgtt cacgccggag aaatagggga cggcatactg gttgcccggg
      841 tcggcggttt ccagcatttt caagagttcg ggatcgatgt ttttatagtt gggaatcagg
      901 tctttgttga ctttttgata cgcgcccgcc tcgatttggc gcggcaggaa ggcgatgccc
      961 ggcacaacca aatcgtaacc ggatttgccg gtcagcattt tggcttccag cgtttcattg
     1021 ttttcgtaca agtcgtaagt cagcttcaga ttgttggctt ttttaaagtc ttcgaccgta
     1081 ctctcgtcaa catagttcga ccagttgtag atgttcagag tatcggtggc agcggcttcg
     1141 gcattggcag cagacgcagc gtctgcttga ggttgcacgg cgtttttttc gctgccgccg
     1201 caggctgcca gagacagcgc ggccaaaacg gctaatacgg attttttcat acgggcagat
     1261 tcctgatgaa agaggttgga aaaaaaagaa aaccccgcgc cccatcgtta ccccggcgca
     1321 aggtttgggc attgtaaagt aaatttgtgc aaactcaaag cgatattgac ctgattttcc
     1381 taaaaaatta ccttgttttc aaaagaggga gaaaacgtcc gcacgatttt gccgtttttt
     1441 tgcgctgtca gggtgtccga cgggcggata gagagaaaag gcttgcatat aatgtaaacc
     1501 ccctttaaaa ttgcgcgttt acagaattta tttttctttc aggagattcc aatatggcaa
     1561 acagcgcaca agcacgcaaa cgtgcccgcc agtccgtcaa acaacgcgcc cacaacgcta
     1621 gcctgcgtac cgcattccgc actgcagtga aaaaagtatt gaaagcagtc gaagcaggcg
     1681 ataaagctgc cgcacaagcg gtttaccaag agtccgtcaa agtcatcgac cgcatcgccg
     1741 acaagggcgt gttccacaaa aacaaagcgg cacgccacaa aagccgtctg tctgcaaaag
     1801 taaaagcact ggcttgattt ttgcaaaacc gccaaggcgg ttgatacgcg ataagcggaa
     1861 aaccctgaag cctgacggtt tcggggtttt ctgtattgcg ggggcaaaat cccgaaatgg
     1921 cggaaagggt gcggttttta tccgaatccg ctataaaatg ccgtttgaaa accaatatgc
     1981 cgacaatggg ggcggagatg aatacacgga atatgcgcta tattcttttg acaggactgt
     2041 tgccgatggc atccgctttt ggagagaccg cgctgcaatg cgccgctttg acggacaatg
     2101 ttacgcgttt ggcgtgttac gacaggattt ttgcggcaca gcttccgtct tcggcagggc
     2161 aggaagggca ggagtcgaaa gccgtactca atctgacgga aaccgtccgc agcagcctgg
     2221 ataagggcga ggcggtcatt gttgttgaaa aaggcgggga tgcgcttcct gccgacagtg
     2281 cgggcgaaac cgccgacatc tatacgcctt tgagcctgat gtacgacttg gacaaaaacg
     2341 atttgcgcgg gctgttgggc gtacgcgaac acaatccgat gtaccttatg ccgctctggt
     2401 acaacaattc gcccaactat gccccgggtt cgccgacgcg cggtacgact gtacaggaaa
     2461 aattcggaca gcagaaacgt gcggaaacca aattgcaggt ttcgttcaaa agcaaaattg
     2521 ccgaagattt gtttaaaacc cgcgcggatc tgtggttcgg ctacacccaa agatccgatt
     2581 ggcagattta caaccaaggc aggaaatccg cgccgttccg caatacggat tacaaacctg
     2641 aaattttcct gacccagcct gtgaaggcag atttgccgtt cggcggcagg ctgcgtatgc
     2701 tcggtgcagg ttttgtccac cagtccaacg gacagagccg tcccgaatcg cgttcgtgga
     2761 acaggattta tgccatggca ggcatggaat ggggcaaatt gacggtgatt ccgcgcgtgt
     2821 gggtgcgtgc gttcgatcag agcggcgata aaaacgacaa tcccgatatt gccgactata
     2881 tggggtatgg cgacgtgaag ctgcagtacc gcctgaacga caggcagaat gtgtattccg
     2941 tattgcgcta caaccccaaa acgggctacg gcgcgattga agccgcctac acgtttccga
     3001 ttaagggcaa actcaaaggc gtggtacgcg gattccacgg ttacggcgag agcctgatcg
     3061 actacaacca caagcagaac ggtatcggta tcgggttgat gttcaacgac ttggacggca
     3121 tctgaaccgc gtgttcagac gatatatcaa gttgccgtgc cgtctgaagc cgccggcggt
     3181 ttggcggggc gggataaaaa tttcgtttga atccgggcaa acgcgtataa tgtgcggttt
     3241 gtacggactt tgtcggaatc aagcaagatg acggaacctg cggccgaagg cggcaaagct
     3301 gccaaggcgt taaaaaaata tctgattacg ggcattttgg tctggctgcc gattgcggta
     3361 acggtttggg tggtttccta tatcgtttcc gcgtccgatc agctcgtcaa cctgctgccg
     3421 aagcaatggc ggccgcaata tgttttgggg tttaatatcc cggggctggg cgttatcgtt
     3481 gccattgccg tattgtttgt aaccggattg tttgccgcaa acgtattggg ccggcagatt
     3541 cttgccgcgt gggacagctt gttggggcgg attccggttg tgaagtccat ctattcgagt
     3601 gtgaaaaaag tatccgaatc gttgctgtcc gacagcagcc gttcgtttaa aacaccagta
     3661 ctcgtgccgt ttccccaatc gggtatttgg acaatcgcat tcgtgtccgg tcaggtgtcg
     3721 aatgcggtta aggccgcatt gccgaaggac ggcgattatc tttccgtgta tgttccgacc
     3781 acgccgaatc cgaccggcgg ttactatatt atggtaaaga aaagcgatgt gcgcgaactc
     3841 gatatgagcg tggacgaagc gttgaaatat gtgatttcgc tgggtatggt catccctgac
     3901 gacctgcccg tcaaaacatt ggcaggacct atgccgcctg aaaaggcgga tttgcccgaa
     3961 caacaataaa gccgccgttc agacggcatt ttctgttttc agtttaaatc aataaaaggt
     4021 gattttatgc gtaccaacta ttgcggtctg atcagtgagc aatacttaga ccaaaccgtt
     4081 accgtcaaag gctgggtaca ccgtcggcgc gaccacggcg gtgtgatttt tatcgacctg
     4141 cgcgaccgcg aaggcatcgt ccaagtcgtg atcgatcccg acacgcccga agcgtttgcc
     4201 gctgccgatt ccgctcgcaa cgaatacgtt ttgagcatta ccggccgcgt acgcaaccgt
     4261 cccgaaggta cgaccaacga caaaatgatt tccggcaaaa tcgaaatcct tgccaaagaa
     4321 atcgaagtgt tgaacgctgc cgctacgccg ccgttccaaa tcgacgatga aaacatcagc
     4381 gaaaacgttc gcctgaccaa ccgcgttatc gacttgcgcc gtccggtgat gcaacgcaac
     4441 ctgcgcctgc gttatcaagt cgctatgggc gttcgccgtt atctggacgc gcaaggcttc
     4501 atcgacatcg aaacgccgat gctgacccgc tccactccgg aaggcgcgcg cgactacctc
     4561 gtgccgagcc gcgttcatcc gggcgagttt ttcgcgctgc cgcaatcacc gcaattattt
     4621 aagcaactgt tgatggtggc cggtttcgac cgttactatc aaattaccaa atgtttccgt
     4681 gacgaagact tgcgtgccga ccgtcagcct gaattcactc aaatcgactt ggaaacctcg
     4741 ttcttaaacg aggatgaaat catggacatc accgaaggta tggcgaaaca agtcttcaaa
     4801 gacgcgctgg gcgtggactt gggcggtttt ccgcgtatgc cttacgccga agcgatgttc
     4861 tattacggtt ctgacaaacc ggatatgcgt atcggcttga aatttaccga gttgaccgac
     4921 ctgatgaaaa cggaagaatt caaagtcttc cgtggcgcag ccgacatgaa aggcggccgc
     4981 gtggttgccc tgcgtgtgcc gaacggtgcg aaattcagcc gcaaagaaat cgacgaatac
     5041 actaaatttg tcggcatcta cggtgcgaaa ggtctggcat acatcaaagt aaatgatgtg
     5101 ggcaacctct ccaacggcga agacagcggc ctgcaatctc caatcgtaaa attcctgtct
     5161 gagaatgccc tgaaagaaat catcgagcgt accggcgcgg aaaacggcga catcatcttc
     5221 ttcggtgcgg acaaagccaa agtcgtgaac gaagccatcg gcgcattgcg tatcaaagtc
     5281 ggcttggaac acggcaaaga taacggctac ttcacagacg aatggaaacc tttgtgggtt
     5341 gtcgacttcc caatgttcga atacgacgaa gaagccgacc gctacgttgc cgtacaccat
     5401 ccgtttaccg cgccaaaaga aggtcatgaa gacctgatgg tttccgaccc tgcaaactgc
     5461 ctggctcgtg cctacgatat ggtattgaac ggctgggaaa tcggcggcgg ctctatccgt
     5521 atccaccgcg cagacgtgca agagaaagtg tttgccgcgc tgaaaatcag ccctgaagag
     5581 caacaagaga aattcggctt cctcttggac aacctgaaat tcggtgcgcc tcctcacggc
     5641 ggccttgcat tcggcctcga ccgtctggta acgctgatga ccggcgccga atccatccgc
     5701 gacgtgattg ccttcccgaa aacacaacgc gcacaatgcc tgctgaccaa cgcgcccaac
     5761 agcgtggacg acaagcagtt gcgtgaattg agcctgcgcc tgcgccaaaa ggtggctgaa
     5821 accaaagaag cataaggaaa acagagccgt ttgacggctc tgtttttttc agacggcatt
     5881 tacgcttctt gacttccctc taattcaaac ctaattttgc tgtgttttaa tggcggtatt
     5941 gaaaaacaca tcttgttcaa tcaaccgata aaaaaaggac tgaaaatgaa aaaactgtta
     6001 ttggccgccg ttgtttccct gagtgccgca accgcatttg ccggcgattc tgccgagcgt
     6061 cagatttacg gcgatcccca ttttgaacaa aaccgcacaa aagccgtgaa aatgttggaa
     6121 cagcgtggtt atcaggttca cgatgtcgat gccgacgacc attggggtaa gcctgtgctg
     6181 gaagtggaag cctataaaga cggccgcgaa tacgacatcg tgttgtctta ccccgacctg
     6241 aaaatcatca aagagcagct cgatcgctga ctcctttgat ggcaagctga accaaaatgc
     6301 cgtctgaagc gttcagacga cattttgcct gttcctcatc aggtatgagg caggcttttc
     6361 ttattaaaaa aatgacattt cacgctgatt tgttataatc attccttttc aacacgacag
     6421 acggagcagg tttattatgc ctatccttac catccgtgaa gtgtgcaaca ttaatcattg
     6481 gggcataggt tattatgatg ttgacgattc cggcgaaatc atcgtctgcc ccaatccggc
     6541 gcaacacaat caaactgttt cactgcaaaa actgactgaa gccgtgcaac aaaaacatca
     6601 ggcgcgcctg cctgttttgt tttgttttcc gcaaatcctc gaacaccgcc tccgcgacat
     6661 taaccgcgcc tttcagacgg cacgggaaga gtgcggctat aagggcggtt attgtttggt
     6721 ttaccctatc aaggtcaacc aacaccgccg cgtcatcgaa tcgcttatgt caagcggaca
     6781 accgcatggt ttggaagctg gttctaaagc cgaactgatg gcggttttgg cacacgccgg
     6841 cacccggcaa acattaatcg tctgcaacgg ctataaagac cgtgaatata tccgtttcgc
     6901 cttgatgggc gaaaaactgg ggcatcaggt ttatttggtg attgagaagc tgtccgaaat
     6961 acaaatggta ttggaagagg cggaaaaact cggcatcaag ccccgtttgg gtgtgcgcgc
     7021 cagactggct tcccaaggtt cgggaaaatg gcagtcttcg ggtggggaaa aatcaaaatt
     7081 cggcttgtcg gcttcccaag ttttgcaact ggtcgatatt ttgaaacaaa aaaacaggct
     7141 ggattgcctg cagcttttgc atttccattt gggctcgcag cttgggaaca tccgtgatgt
     7201 tgccacaggt gtacacgaat cggctcggtt ttatgttgag ttgcacaaac tgggggtaaa
     7261 tatccgctgt tttgatgtag gcggcgggct tggcgtggat tacgaaggaa accgcacaca
     7321 atcggattgt tccgttaatt acagcctcaa cgaatatgcc gccacagtcg tatggggcat
     7381 cagccaggct tgtctcgaac acgggctgcc gcatccgaca atcattaccg agagcgggcg
     7441 cggcattacc gcacatcacg ccgttttggt tgctaatgtt ataggcgttg aacgttacaa
     7501 accgcgccgg ctggatgcgc catcgcccga agcaccgcgt gtgttgcaca gtatgtggga
     7561 aacttggacg gatatttccg cctcgcggga aaaacgttcc ttacgcagct ggatacacga
     7621 agggcagttt gatcttgccg atgtgcataa tcagtataat gtcgggctgt tgagtttggc
     7681 gcaacgtgcg tgggcggagc aactgtattt aaatatctgt catgaagtcg gcgaattgtt
     7741 taatgaaaaa caccggtctc accgaaccat tattgacgaa ttgcaagaac gttttgccga
     7801 taagctgtat gtcaatttct cactcttcca atctttgccc gatgcttggg gcatagatca
     7861 acttttccct gtttgtccca ttaccggttt gaatgaaccg attgcgcgcc gcgccgtgtt
     7921 gttggacatt acctgcgatt cagacggtac gattgaccac tacatcgacg gagacggcat
     7981 cgccggtacg atgcctatgc ctgattatcc cgaagaagag ccgccgcttt taggcttttt
     8041 tatggtggga gcatatcagg aaatactcgg caatatgcac aatcttttcg gcgacactgc
     8101 cactgccgat gttgttgtag gggaagacgg acaatttacc gtcatcgatt acgatgaagg
     8161 aaacaccgtt gccgatatgc tcgaatacgt ttatcaagat ccgaaagagc tgatgaaacg
     8221 ctatcgcgaa caaatcgaac attcagacct tcctgcctcg caggctatgt ctttcttaaa
     8281 agaactcgaa gcggggctta atggttatac ctatttggaa gacgaataga cgcatcaagg
     8341 catcggatat gtcgtctgaa gcccgatttt cttactcaaa caccaatcat cacgaccgat
     8401 tgaaaccaat tacaaggaat cattacgatg caatacagca cactggcagg acaaaccgac
     8461 aactccctcg tttccaataa tttcgggttt ttgcgcctgc cgcttaattt tatgccgtat
     8521 gaaagtcatg ccgattgggt tattaccggc gtgccttatg atatggcggt ttcagggcgt
     8581 tccggcgcgc gtttcggtcc tgaagccatc cggcgcgcct ccgtcaacct cgcttgggag
     8641 caccgcaggt ttccatggac atttgatgtg cgcgaacgcc tgaacattat tgattgcggc
     8701 gacttggttt tttcttttgg cgacagcagg gattttgtcg aaaaaatgga agcgcacgcc
     8761 ggcaaattac tttcttccgg caaacgctgt ttgagtttgg gcggcgacca tttcattacc
     8821 ctcccgttgt tgcgcgccca cgcccgctat ttcggcaaac tcgcactgat tcattttgac
     8881 gcgcacaccg acacctacga caacggcagc gaatacgacc acggtacgat gttctatacc
     8941 gcccccaagg aaggcctcat cgacccgtcc cgttccgtac aaatcggcat acgcaccgaa
     9001 cacagtaaaa aattgccttt tactgtgttg tccgccccta aagtcaatga agacagtgtt
     9061 gaagagaccg tccgtaaaat caaagaaacc gtcggcaata tgcccgttta cctgactttc
     9121 gacatcgact gcctggaccc gtcgttcgcc cctgggaccg gtactcccgt atgcggcggc
     9181 ttgagcagcg acagggcatt aaaaatccta cgtgggctga cggatctcga catcgtcggt
     9241 atggatgttg tagaagttgc cccctcttac gaccaatccg acattaccgc tttggccggc
     9301 gccacaattg ccttggaaat gctttacctt caaggtgcga aaaaggactg aacatccggc
     9361 atcccccggg ttttcgccgt gccgttcaaa cggcgtattc agtctaatga aaattcaaat
     9421 actgaaacaa aagttgcccg gagccgcata tcggaaagac ggtgaaatat cggaatatat
     9481 cttataaaac aattagttaa atattatttt tccgattttt cgggacggtc ttttttacgg
     9541 aggtcaatat gatgaaattg ggtttcaaac cgatacccct cgccattgcc gcagtattgt
     9601 gcgccctggt tttggcactg cccgtacccg acggggtcaa gcctcaggct tggacgctgc
     9661 tggccatgtt tgtcggtgtg attgccgcca ttatcggcaa ggccatgccg ttgggcgcgc
     9721 tgtcgattat tgccgtcggg ttggtcgcag taaccggcgt aaccgccgac aaaccgggcg
     9781 cggcgatgag cgatgcgttg agtgcgttcg ccaatccgtt gatttggctg attgccatcg
     9841 cagttatgat ttcgcgcggt ttgctcaaaa cagggctggg gatgcgtatc ggatatttgt
     9901 ttatcgccgt ttttggaaga aaaacgctgg gcatcggtta cagtctcgct ctttccgaac
     9961 tgctgctggc tcccgttacc ccttccaata ccgcgcgcgg cggcggcatt atacatccga
    10021 ttatgcagtc gattgccggc agttacggct ccaatcccgc aaaaggcaca gaaggcaaga
    10081 tgggtaaata tttggctttg gtcaactatc attccaatcc catttcgtcg gctatgttta
    10141 ttactgcaac tgcccccaac cctttaatcg tcaacttgat tgccgaaaat ttaggcagta
    10201 gtttccgtct ttcttggggg gcgtgggcgt gggcaatggc tgttcccggc gttatcgcct
    10261 ttttcgttat gcctttgatt ttatattttt tgtatccgcc tgaaattaaa gaaacgccca
    10321 atgccgttca atttgccaaa gaccgtctga gggagatggg taaaatgtcg gcagacgaaa
    10381 tcattatggc ggtcattttc ggtatcttgt tgctgttgtg ggcagatgtt cccgccctta
    10441 ttaccggcaa tcacgctttt agtatcaacg ccaccgccac cgcatttatc ggattaagcc
    10501 tgcttttgct ttccggtgta ttgacttggg acgatgtttt gaaagaaaaa agtgcgtggg
    10561 atacgattat ttggtttggc gcattgatta tgatggccgc atttttaaat aaactcggac
    10621 tgattaaatg gttctccgga gtgttggcgg aaagtgtcgg cggtttgggc gttagcggca
    10681 cggctgcggg cgtaatcctc gtgcttgctt atatgtatgc gcattatatg tttgccagta
    10741 ctactgcaca tattaccgct atgttcggcg catttctcgc tgctgccgtt tcactgaatg
    10801 cccctgcgat gccgaccgcg ctgatgatgg cggccgcatc caacattatg atgaccctca
    10861 ctcattatgc gaccggtact tcgcctgtga ttttcggttc gggctacacc acaatgggag
    10921 aatggtggaa ggcgggtttt atcatgagcg tagtcaattt tctgattttt ttcgttatcg
    10981 gcagcatttg gtggaaagtt ctggggtatt ggtaagggaa aaataaaata aatttccaat
    11041 ctgtgtttat ttgattgggc gactattatc gtgaaatatg ccgtctaaag ccttcagatg
    11101 gcatatttgt gcgcttgaat gttgcagaaa gcggcaggcg gcggtgtagg aaaagccaaa
    11161 caaaaaccaa accgcctatc aacttctgat aaacataagc attaaataat cagaaggtta
    11221 ttcaattacc taaacgcaaa tttccctgcc gtatcacatc tattgaaaat aatacatcaa
    11281 ccggctcgga agcagcctga tcaggtgttt ctacttgcgg cgatgaatcg gcagccggtt
    11341 cggtataggc agtcggcgtg ccgtcggatt gggtatttaa atgcggttgt gcctcgggcg
    11401 tgtgtacatc aggcacttcg ggcgtgcgtg tctcggatat ttcggcagag ttggtttcct
    11461 cagtttgttc aatgacttca gcttggctgt atgaggaaga accctgtatc cacgccagcg
    11521 atttgagcgg catcttcatc ttgccgtttt tgccgcaggt caggcagacg gccgatccgg
    11581 tgcggtcttt gagtacagca tcgactttct cgggcgcgat ggttttaccc tgtgtttttg
    11641 cccattgcgc aatacttttt ttcagagagg cgatgtcaag gttgttctta ccgtaagggt
    11701 cgcggaaggc ggcaagccac aggttgcgat ccgcatcttc attgagaccc gccatttgat
    11761 agatgacgga ggcgggcgag ccgctggcga tggttttggc aaactcgagc gcgtcgggcg
    11821 atttcatgcg gacgcagccg tgactccgaa ccccggggac gctggccggc gcattggtcc
    11881 cgtgtatgcc caaaccgagt ttagggtcgc ctaagcggac aaaaaccggc cccaaagggt
    11941 tgtccgggcc ggcggctatg gtttttacgc cgtcgccgcg ttctttctgt atggatttgg
    12001 ggatgtacca aacagggtta taggctttcg caccgatttt atgttcgcct agattggttt
    12061 gcgtcatcgc ccgacctact gcaacgggat aaaccttggt cagtttgccg tcggtgtaga
    12121 ggaacaggcg ttgctgaggg atgttaatga agacatgttg accttgtgcg acgggggaga
    12181 catcgggaat gacggtgttt gcgtatgaaa aaccgcttat caatagtgca gcagtgcggc
    12241 agattgtttt attcatatca aaatatggtg tgtgtccgat aggttttcgg caaatcatac
    12301 ctgaaaccgt accaatttgt gcgaaaatat gcgcttcggt acagtgcgga cggattgggt
    12361 aatggcaacg gaaacaaatg tcgcggaaat ttccgccttg gattatgaag gcaggggtgt
    12421 ggcaaaggtc ggcggcaaaa cggtttttat taaaagggca ttacttgatt gtttgatgct
    12481 gggttggttc aggctttaac tcaggaatat ttacatcata atgaaggttt ttaaacaaca
    12541 gcttgaacaa ctcggcgcgc aaaaccaata tcgttcgatt ccggatttga ttcatcaagg
    12601 gcggtatatt acgcgggaaa actgcaaaat gctgaatatg tcgtctaatg attatttggg
    12661 tttggcatca gatgaaaact tgcgccggtc ttttttgcag caatacggcg gtaattttcc
    12721 ctcttttacc agttcttcat cgcgtttatt aacgggcaac tttcctattt ataccgattt
    12781 ggaagagctt gtcgcacaac gtttccaacg ggaaagcgcg ttattgttca acagcggcta
    12841 tcacgccaat ctcggtattt tgcctgcttt gacgacgacg aaaagtttga ttttggcaga
    12901 taaatttgtt cacgccagta tgattgacgg catccgtttg agccggtgtg cgttttcccg
    12961 ttatcgtcat aatgattatg aacatttgaa aaatctgctt gaaaaaaacg tcggaaaatt
    13021 tgaccgcact tttatcgtta ccgaatctgt tttcagtatg gacggcgatg tggcggattt
    13081 gaaacagctt gtccaattaa aaaaacagtt tcccaatact tatctttatg tggatgaagc
    13141 ccacgcaatc ggtgtttatg ggcaaaacgg attggggatt gccgaacggg ataatttgat
    13201 tgccgagatt gatttattgg tcggcacttt cggtaaagcc ttagcctcgg tgggggcgta
    13261 tgccgtctgc aaccaagtat tgaaagaatg tttgattaat caaatgcgcc cattgatttt
    13321 ttcaaccgca ttgccgccgt ttaatgtggc ttggacttat tttatttttg aacgattgcc
    13381 gcaattctca aaagaaagaa gccatcttga gcagttaagc gcatttttac ggcgggaagt
    13441 ggcgcatcgg acgcaaataa tgccgagcca aacctgtatc gtcccctata ttttaggcgg
    13501 gaatgaagcc gcccttgcca aagcggaata tctgcaaagg cagggttatt attgcctgcc
    13561 catcagaccg ccgacagtac ccaaaaacac atccagaatc cgcctgtctt taacggcaga
    13621 tatgacaacg gatgaagtgc ggcagtttgc ggtgtgcctg taaggatatg atatgaaaac
    13681 aaaattttac aatcatcaag gcggacattt aatcctgtat tttgcaggtt ggggaacgcc
    13741 gcccgatgct gtaaatcatt tgattttgcc ggaaaatcac gatttattga tttgctatga
    13801 ttatcaagat ttaaatttgg attttgattt ttccgcctat cggcacatcc gtttggtggc
    13861 gtggtcaatg ggcgtttggg cggcagagag ggcattgcaa ggaataagat taaaatccgc
    13921 aacggcagtg aatggcacag gtttgccttg cgatgataat ttcggtatcc cttgcaccgt
    13981 ttttaaaggc acattggaga acctcacgga aaacacccgt ttaaaatttg aacgcagaat
    14041 gtgtggcgat aaagcatctt ttgaagatta ccaacaattt cccgcacgcc cgtttggcga
    14101 aattcatcaa gaacttatcg cactttttgc gatgatcggg caagatagac gtacagatct
    14161 tatccgctgg acaaatgcct tggtcggatc gggcgataaa atttttatgc ctgccaatca
    14221 gcaccgatat tggacaccgc gttgcaccgt tcgggaaatt gacgtcggac attacctgtt
    14281 ttcaagattc acccattggt cggcactatg gaatcactga ctgccataaa taaatcgcgc
    14341 attcggcagg ctttccaaaa agcattaaac gattatgacc ggcacgcctt aatccaacaa
    14401 aaaatgacga ttaatttaat gacgcatttg caagattatt tgccggatat gccattggaa
    14461 aacgtgttgg aattgggctg cggctcagga atgttgagtg ccttgctgca aaaacagatt
    14521 tcagcgaatt attggttatt taatgatttg tgcaatgtgc agccccaact ggctgaaaaa
    14581 ctgccgcaat cctttgattt ttattgcggc gatgcggaaa actttccttt tcaacgacaa
    14641 tttgacttaa tcgcaagcgc atctgccgtg caatggtttc atcaacccga cgcttttatc
    14701 acccattgca aaacaggctt gaaaacaaac ggattattgg cggttgcaac ctttggcaaa
    14761 gacaatttaa aagaagtccg ccaaattaca aatataggct taaattaccc gactttatcc
    14821 caatggcagg cttggttagc caaagatttt gagcttttat ggtgtgagga ttttacggta
    14881 atactagact ttgatacgcc gtcagatgta ctcaaacacc ttaaatatac aggcgtaaca
    14941 gccacgaacc aaaaaaattg gacaagaaaa aatctcaatg gatttattgg cgattacttg
    15001 tcggcgttca gtatgccgtc gggcaaagtg cacctgactt atcatccgtt attttttatc
    15061 gcgcgctact ctgcggcggg caggcaataa ggcagcttat gggcaaagtt atttttatat
    15121 cgggtattga tactgatgtg ggtaaaaggt aatatggcga ggcttgtgca gaaggcatat
    15181 tgttaaacgt taaattatgg tatgatttaa aacttacaag tctatttcag taaatcgtta
    15241 ataataaaag cggacaatgg ccgttgcagg cggtcagcta tccgctcgtt acggtatcgg
    15301 gagtatcctt tggaaaactc attaattatc ggtttggcac tggcggtatt gctgatgctt
    15361 ttggttatgc gtgcgaagca gggtaagaaa acaccgaagc gcaaatccca aggtgtcggc
    15421 aatacgcagg ggcagacacc cggaagcaat gattcggact gggtcgatca gattggacaa
    15481 tcggtttcag acggcacgca acccgactgg tcttggaacg aaagtgccga gaccgcatcc
    15541 gccgccgtat ccgcgcaaga agtcgatccg cttacggagt atcaggttta taagcaattc
    15601 ggttatcagg gcaaggctgc cgaatctttg gctgcctatc tggacggcat tccggatggt
    15661 gaagcgaaac ctgaaaacct tatccgcgag ctgctcgata tcaatctcga agtgggggat
    15721 gtcgatgttt tggcagacaa tctgcaaaaa tacggcaaac tgattccttc cgaacttttg
    15781 gcaaaatata tcgaacaggc attacagcgc gattcaaacc atttgcgtat ccgcgtcttg
    15841 gcggaagaag gtttgggatg gggtactcag gagattgaaa aacgtgcgga aggcggttct
    15901 gcgacggcag cttccgcatc gcccccgccg gatgccggcg gtaaggctta tgaagccgaa
    15961 gaaatcaagc gcatcccgat tgtgcggggc aaaaaagacg tgtccggaat cagtcaagag
    16021 gaaatcggtg cgattgccgg tttggtccgt gccgatcaag gtgcgaaaat ccttaaagac
    16081 aaagtcagct atgaaacggc atcgaaacaa tacgaccgtg ccatccaaac ttccgaaaaa
    16141 cctgcaaacc tgattatcga tgcgttgaaa ctcgattacc aacacgcgga catagaccgt
    16201 tttgccggac atttgtggaa actttaccaa acgttgggca actacggcag gcaggttaaa
    16261 gagcggatgc tggggtgggg gtacagcctg ggttaccatg aagttttcga tgatttggaa
    16321 aaagggccga acgaccggca aatcaaagac atcggtatgg ggcacgggta tctgccgaaa
    16381 aatatacaga aattcaaatc gcaacatcgg gatttggtgc ttcaagattc ttcgttgatc
    16441 aacaccggtt cgtctccggc agacgatgcg gttaaggaag tagagtcgtt gctgatgtat
    16501 ggtcagattg aagcggcaat ggatgtgttg gagcaggcgg tattgaaata tcccgacgag
    16561 tcccagcttt atattacgtt gatcgatatt tatgaacgta ctgaagattg ggataggttg
    16621 gggcagtttt taagggtatt gagggaacgt gcggacaggc ttcctgaaga ggtcgttatg
    16681 ctgatgagcc ggctgctgca gcgtatgaat caaaatatta aaaaaataaa acggtacgga
    16741 aaataaaaat ggaagttcaa ctgccgaaaa ttaaaacagt acgcgtaatg ttggcgggga
    16801 tgacggcgca gcaggaatcc gttttcaaaa tggcattcaa aatgcacaat accacccgtt
    16861 atgaaacagt atccccttca gacggcagtg ccgtgcccga tttggttttg gcggataccg
    16921 atgccgaggg cggttttgaa ctttggaaag agcttgccga gcgttataag gatatacccg
    16981 tcgccgtctg ttcggagaaa gttcccgatt ctgaagttcc ctacctgccc aaaccgattc
    17041 ggtttgaaac attgtttcct atgctccgca aattgttgca gggcgagaat gtttatggga
    17101 aatcgtttat tgcacccgca gaccggtcgg cgaaaaataa cgggaatgtg cagcgtacgg
    17161 ttacgatacg ccagtttaac ccgaataaag gattattggg ggcgttgcgg tttgcggaaa
    17221 agaacaggca ggacatcgct atcttgcatg gaaataagcc ggtccttatt gttttcccct
    17281 cgatacaacg ggttttgctg acagaaagtg tgcaaaaact cgaagaattg tgcaaagacg
    17341 aaaatttgca ggtcagctgc aagactgttc ccgataaccc gcaatggcgc gaaaaggcta
    17401 aagtaggcat tatgtcctgt atgtggcagt tttccatttg gacagtgcag ggcaggttga
    17461 tttatccgat ttctcccgat actccgttta cgttgaaatc ttggccaaac ctgacccggt
    17521 tggcaaatgt gccggggtcg atacgcttgt cggcatttct gaccaaggca tccgtcaacc
    17581 ttaacgtgtt gtataaagtg atgcctttaa acctcaatga tattctgaat tatcttgcgg
    17641 caacctatac aaccgggttt ttgtcggtag atttaaaaac ggtttcacaa caggcatact
    17701 ccgatatggc ggataaaata aatatcggag ccgattctgc ctctgatagt gaaatgatga
    17761 aaaaagcgga aaaaatcaca acatcatccc aatcccagtc gcgcggtctt ctgcaaaggc
    17821 tgatgaaaaa actgttgggc agctaagagg cggagagatg agagaaaata aaattatttt
    17881 cacaggacct gtcggcgtag ggaaaaccac tgccattgcg gctatttcgg acgaagcact
    17941 cgttcagacc gatgcttccg catccgatat gactttggat aggaaaagga atacgacagt
    18001 ggcgatggac tacggggcca tcagcttgga tgaggatacc aaagtccatt tatatggtac
    18061 gcccggtcag gaacggttca actttatgtg ggaaatctta agccaaggca gtatgggttt
    18121 ggtcttgctt ttagataatg cccgaaccaa tccgttgaaa gatttggaat tctttttaca
    18181 ttcgtttcga gggctgctgg agaaggcacc cgtcgttgtc ggtattacca agatggatat
    18241 acgctctcag cccggtatcg acgtgtatca caaatatctt gcaaaacata atcttaatgt
    18301 tccggttttt gaaattgatg cccgtaagga agatgacgta aaacaattgg ttagcgcaat
    18361 gttattttct attgatccgg gactggaggt ttaatatgga atcaacactt tcactacaag
    18421 caaatttata tccccgcctg actcctgccg gtgcatttta tgccgtatcc agcgatgccc
    18481 ccagtgccgg taaaactttg ttgcacagcc tgttgaaagc ggatgcggac gaaatggtca
    18541 gcagtgagaa gctgcttact tgggcggaca ccgccgacat cgataccgct ttgaacctgt
    18601 tgtaccgttt gcaaaaactc gaattcctct atggcgatga aaacggtcat tcagacggca
    18661 tcaatttgtc ggacgagcaa ttgccgtttc tgatggaaca attgtccggc agcggtaagg
    18721 cgttattggt cgatcggaac ggtctgtatc ttgccaacgc caatttccat catgaggcgg
    18781 cggaagagtt ggggttgttg gcggcagaag tcgcacagat ggaaaaaaaa taccggctgc
    18841 tgattaagaa caacctgtat atcaacaata acgcttgggg cgtttgcgat ccttccggtc
    18901 agagcgaatt gacatttttc ccattgtata tcggttcaac caaatttatt ttggttatcg
    18961 gcggcattcc cgatttgggc aaagaggcat ttgttacttt ggtaaggatt ttataccgcc
    19021 gttacagcaa ccgcgtgtaa aacttgggag agaggagggg ttatgcagca attattgatt
    19081 tcaatccttg aagatttaaa caatacatct acggatatta tcgcgtctgc cgttatctca
    19141 accgacggat tgccgatggc gacaatgctt ccttcacatt tgaattcgga cagggtaggg
    19201 gcgatttctg ccactttgct tgctttgggg agtcgctcgg tgcaggaact cgcctgcggg
    19261 gaattggaac aagtgatgat taaaggaaaa tcaggctata tccttttaag tcaggcgggt
    19321 aaagatgccg tgttggtgct ggtggcaaaa gaaaccggca gacttggttt aatcctattg
    19381 gatgccaaac gtgcggcaag gcatattgcg gaagccatat aacatataaa gattgcgggc
    19441 ttgcagataa agtgcaatcg attgtcaatt tatattgaca cgttcggtat ttctgtttta
    19501 ttattcgcgc ttattccccg atagctcagt cggtagagcg acggactgtt aatccgcagg
    19561 tccctggttc gagcccaggt cggggagcca aatttcaaaa ccctctaagt attttcttag
    19621 agggttttgt tttaccggcg gtcagaaacg catttttgag atgattgttt tgagatggaa
    19681 taaaatcttt gcaaaattcc tttcgtgatg gttatgaaaa aataggggct gtcctggaca
    19741 actaggataa actcgatttt atagtggatt aacaaaaacc agtacggcat tggctcgc
//
LOCUS       DAWGNT010000023        19758 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.023, whole genome shotgun sequence.
ACCESSION   DAWGNT010000023 DAWGNT010000000
VERSION     DAWGNT010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 19758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19758
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.023"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            45..1223
                     /locus_tag="WHR98_000573"
     CDS             45..1223
                     /locus_tag="WHR98_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEZ2307289.1"
                     /translation="MAFLKLTEQNVQGKTVLIRADMNVPFKDGKISDDTRIRASIASV
                     KYCVDNGASVIVMTHLGRPTEGEFHPEDDVAPVAAHLGGLLGKNVKVLNDWRENKPAL
                     NAGDVVMLQNVRINKGEKKNDLELGKAYASLCDVFVNDAFGTAHRAQASTEAVAQAAP
                     VACAGVLMAGELDALGKALKQPARPMVAIVAGSKVSTKLTILESLADKVDQLIVGGGI
                     ANTFLLAEGKAIGKSLAEHDLVEESKKIMAKMADKGGSVPLLTDVVVAKAFAADAEAV
                     VKDIADVAEDEMILDIGPKSAAALAELLKAAGTVVWNGPVGVFEFDQFAGGTKALAEA
                     IAQSKAFSIAGGGDTLAAIAKFGVTDQIGYISTGGGAFLEFLEGKELPAVAALEKRGA
                     "
     gene            complement(1290..1538)
                     /locus_tag="WHR98_000574"
     CDS             complement(1290..1538)
                     /locus_tag="WHR98_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family transcriptional regulator"
                     /protein_id="HEZ2307290.1"
                     /translation="MLTSEQVKAMIEGVAKCEHIEVEGDGHHFFAVIVSSEFEGKARL
                     ARHRLIKDGLKAQLESNELHALSISVAATPAEWAAKAQ"
     gene            complement(1629..2546)
                     /gene="ftsX"
                     /locus_tag="WHR98_000575"
     CDS             complement(1629..2546)
                     /gene="ftsX"
                     /locus_tag="WHR98_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HEZ2307291.1"
                     /translation="MSIIHYLSLHVESARTALKQLLRQPFGTLLTLIMLAVAMTLPLF
                     MYLGIQSGQSVLGKLNESPQITVYMETAAAQSDSDTVRSLLARDKRLDNIRFISKEDG
                     LEELQSNLDQNLISMLDGNPLPDVFIVTPDLATTPAQMQAIYRDITKLPMVESANMDT
                     EWVQTLYQINEFIRKILWFLSLTLGMAFVLVAHNTIRLQILSRKEEIEITKLLGAPAS
                     FIRRPFLYQAMWQSILSAAVSLGLCGWLLSAVRPLVDAIFKPYGLNIGWRFFYAGELG
                     LVFGFVIALGVFGAWLATTQHLLGFKAKK"
     gene            complement(2543..3193)
                     /gene="ftsE"
                     /locus_tag="WHR98_000576"
     CDS             complement(2543..3193)
                     /gene="ftsE"
                     /locus_tag="WHR98_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HEZ2307292.1"
                     /translation="MIRFEQVSKTYPGGFEALKNVSFQINKGEMIFIAGHSGSGKSTV
                     LKLISGITKPSRGKILFNGQDLGTLSDNQIGFMRQHIGIVFQDHKILYDRNVLQNVIL
                     PLRIIGYPPRKAEERARIAIEKVGLKGRELDDPVTLSGGEQQRLCIARAVVHQPSLLI
                     ADEPSANLDRAYALDIMELFKTFHEAGTTVIVAAHDETLMADYGHRILRLSKGRLA"
     gene            complement(3190..3381)
                     /locus_tag="WHR98_000577"
     CDS             complement(3190..3381)
                     /locus_tag="WHR98_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307293.1"
                     /translation="MPSESASDGIFPARPSVSAKLIHYLKTGGIFIIGTVLPIVQTAY
                     PCGRNRPKRYAAHSLQDLL"
     gene            complement(3389..3871)
                     /locus_tag="WHR98_000578"
     CDS             complement(3389..3871)
                     /locus_tag="WHR98_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEZ2307294.1"
                     /translation="MKYLNLAAITLAATFAAHTASADELAGWKDNTPQSLQSLKAPVR
                     IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW
                     RYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTEAVKLAHSKCR
                     "
     gene            3995..4348
                     /gene="arsC"
                     /locus_tag="WHR98_000579"
     CDS             3995..4348
                     /gene="arsC"
                     /locus_tag="WHR98_000579"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271974.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HEZ2307295.1"
                     /translation="MSEIKIFHNPRCSKSRAALSLLEERGIAAEVVKYLDTPPDLSEL
                     KDIFNKLGLESARGMMRVKDDLYKELGLDNPDLDNDALLRAIADHPALLERPIVLANG
                     KAAVGRPLENIEAVL"
     gene            4345..5001
                     /locus_tag="WHR98_000580"
     CDS             4345..5001
                     /locus_tag="WHR98_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEZ2307296.1"
                     /translation="MKKRLFCSRNGLRYYLLGGFCLSVFPLLLVFASSVWAVYRTGGQ
                     VLPPYVRADAALVLGAAAWDKRPSPVFRERINHAIALYQSRRVGKIIFTGGRSKKGYM
                     TEAEVGRRYALKQGIPPRNILFENTSRNTYENLNNIRPVLRANGIASVVIVSDPYHLA
                     RAAEMAEDLGVRVYMSATPTTRFDAGNKKKIFMLQEGYALSLYRLEKWGRDFFNWLFH
                     "
     gene            5194..6588
                     /locus_tag="WHR98_000581"
     CDS             5194..6588
                     /locus_tag="WHR98_000581"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEZ2307297.1"
                     /translation="MTVKTRFAPSPTGYLHIGGVRTALFSWAFARHHKGEFLLRIEDT
                     DLARSTAESVNIILDGMKWVGLDYDNADNVVYQTRRFERYKEVIAELLAKGDAYYCYC
                     SKEELEAMREKAEKEGTATYDRRWRPEAGKTLPEIPAGVQPVVRFKTPLDGVTKWADL
                     VKGEISIPNEALDDLIIARADGTPTYNFCVVVDDYDMGVTHVIRGDDHVNNTPKQINI
                     LKAIGATLPEYGHLPMILNEQGKKISKRSGDTVAITDFGAMGILPEAMLNYLARLGWA
                     HGDDEFFTMEQFIEWFDLKDVSPSPSRMDLKKLYWINGEHIKITPNGKLAELVKPRLA
                     LRDIHETEKPALEDVLAQVKDRAQDLNALADECLYFYKKQVPAEADVAKHWDDEAAAR
                     MLRFAERLEGLEDWNTEAIHDLFKPFCDEEGIKMGKLGMPLRLAVCGTAKTPSVDAVL
                     ALIGKEEVLKRIRA"
     gene            6609..7004
                     /locus_tag="WHR98_000582"
     CDS             6609..7004
                     /locus_tag="WHR98_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307298.1"
                     /translation="MPSDVGIRLQTAFKRKFKMKKIFYFLMVVFSTSVWAGDAEDNLL
                     SIQSGYRALLQKQNNLDGKIIGMQSDLEDARRRLQAAQADINRLEAEIPAAMAQKARQ
                     AEELRQIGVRLDHAWNAVYGAGGTKASGN"
     gene            7008..7499
                     /locus_tag="WHR98_000583"
     CDS             7008..7499
                     /locus_tag="WHR98_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEZ2307299.1"
                     /translation="MNSLFVDNTVFITRLKAGHIGRLVQALFEEWHGFEPWSSVDKIR
                     AYYGRCLKDDELPLAFAAVDDFGTLLGSAAVKRHDMESFPQYEYWLGDVFVLPEYRGK
                     GIGRRLVAHCIGAARSLGIKFLYLYTPDVQIFYESFGWAVVGRHFHNGEWVTVMRLDM
                     DKV"
     gene            complement(7623..10217)
                     /gene="mutS"
                     /locus_tag="WHR98_000584"
     CDS             complement(7623..10217)
                     /gene="mutS"
                     /locus_tag="WHR98_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEZ2307300.1"
                     /translation="MSKSAVSPMMQQYLGIKAQHTDKLVFYRMGDFYEMFFDDAVEAA
                     KLLDITLTTRGQVDGEPVKMAGVPFHAAEQYLARLVKLGKSVAICEQVGEVGAGKGPV
                     ERKVVRIVTPGTLTDSALLEDKETNRIVAVSPDKKYIGLAWASLQSGEFKTKLTTVDK
                     LDDELARLQAAEILLPDSKNAPQLQTASGVTRLNAWQFAADAGEKLLTEYFGCQDLRG
                     FGLDGKEHAVAIGAAGALLNYIRLTQNLMPQHLDGLSLETDSQYIGMDAATRRNLEIT
                     QTLSGKKSPTLMSTLDLCATHMGSRLLALWLHHPLRNRAHIRARQEAVAALESQYKPL
                     QCRLKSIADIERIAARIAVGNARPRDLAALRDSLFALSEIELSAECSSLLGTLKAVFP
                     ENLSTAEQLRQAILPEPSVWLKDGNVINHGFHPELDELRRIQNHGDEFLLDLEAKERE
                     RTGLSTLKVEFNRVHGFYIELSKTQAEQAPADYQRRQTLKNAERFITPELKAFEDKVL
                     TAQEQALALEKQLFDGVLKNLQTALPQLQKAAKAAAALDVLSTFSALAKERNFVRPEF
                     ADYPVIHIENGRHPVVEQQVRHFTANHTDLDHKHRLMLLTGPNMGGKSTYMRQVALIV
                     LLAHTGCFVPADAATIGPIDQIFTRIGASDDLASNRSTFMVEMSETAYILHHATEQSL
                     VLMDEVGRGTSTFDGLALAHAVAEHLLQKNKSFSLFATHYFELTYLPEAHAAAVNMHL
                     SALEQGQDIVFLHQIQPGPAGKSYGIAVAKLAGLPVRALKSAQKHLNGLENQAAANRP
                     QLDIFSTMPSEKGDEPNVDSFVDKAEEKHFEGILAAALEKLDPDSLTPREALSELYRL
                     KDLCKSVS"
     gene            10661..11665
                     /gene="gap"
                     /locus_tag="WHR98_000585"
     CDS             10661..11665
                     /gene="gap"
                     /locus_tag="WHR98_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEZ2307301.1"
                     /translation="MSIKVAINGFGRIGRLALRQIEKAHGIEVVAVNDLTPAEMLLHL
                     FKYDSTQGRFQGTAELKDDAIVVNGKEIKVFANPNPEELPWGELGVDVVLECTGFFTN
                     KTKAEAHIRAGARKVVISAPGGNDVKTVVYGVNQDILDGSETVISAASCTTNCLAPMA
                     AVLQKEFGVVEGLMTTIHAYTGDQNTLDAPHRKGDLRRARAAALNIVPNSTGAAKAIG
                     LVIPELNGKLDGSAQRVPVATGSLTELVSVLERPVTKEEINAAMKAAASESYGYNEDQ
                     IVSSDVVGIEYGSLFDATQTRVMTVGGKQLVKTVAWYDNEMSYTCQLVRTLEYFAGKI
                     "
     gene            complement(11735..11854)
                     /locus_tag="WHR98_000586"
                     /pseudo
     CDS             complement(11735..11854)
                     /locus_tag="WHR98_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(11923..12603)
                     /gene="tsaA"
                     /locus_tag="WHR98_000587"
     CDS             complement(11923..12603)
                     /gene="tsaA"
                     /locus_tag="WHR98_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HEZ2307302.1"
                     /translation="MTYTIVPIATARSPYKQKFGIARQPGLVSAAEVCIELNPEFTAD
                     SVRGLEDFDYVWISFIFHGVLDEGWAQMVRPPRLGGKQKMGVFATRSPHRPNHLGLSL
                     LKLNRIETGKPVRLYCSGADLLDGTPIVDIKPYIPFVESKPDAASGFVSGKPVELEVV
                     WQENIGAENLSANTKNLISQSIAQDPRPAYQNIPERIYVMNIADYEIRFQIEENRATV
                     IDLSPTPL"
     gene            12718..13353
                     /locus_tag="WHR98_000588"
     CDS             12718..13353
                     /locus_tag="WHR98_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamidase"
                     /protein_id="HEZ2307303.1"
                     /translation="MIVSIDVDAQKTFTPLCPKELPVNEGHLIVEELNAQAALADLRV
                     MTKDAHHMVAKWLVDNPVDMLKPTGLPDADLTWVAHAMVGTRGYELLDGLPSAKEYDY
                     CVWKGVDPELHPYGACFHDIEEKLSTGLIEWLRCQNTDMVIVGGLATDYCVKTTVLQL
                     LKGSNWQVIVNEAACRGIAPDTIETAWQEMRSAGAVILKNAEEIKKYINNQ"
     gene            13390..14358
                     /gene="waaC"
                     /locus_tag="WHR98_000589"
     CDS             13390..14358
                     /gene="waaC"
                     /locus_tag="WHR98_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEZ2307304.1"
                     /translation="MKILLVRLSSMGDLIHTLPAIEDLARQCPDVELHWLCEAGFADI
                     ARLHPFVKKIHVMKWRQWRKHLFQAETWREMGHLKQTLRQEAFNFVLDSQGLIKSACF
                     AKMAKSPIYGLDKNSAREGLAALAYAKTYAVPKGKNAVWRNRELFAQVFGYAMPETQV
                     FGLTVPEAGRLKNLAQPYYAALHATSRDSKLWPVENWRSLLQKLNEEQQCNIYLPWGN
                     EDEKTRAKQIADGLPFAIVCDKMNLLQAAYLLKHAVGIVGVDTGLLHLANALEKPVVG
                     IYTDTDPIKTGVQVSPIAKNLGNIGQIPTADLVYQALMDCVAADKG"
     gene            14585..15334
                     /locus_tag="WHR98_000590"
     CDS             14585..15334
                     /locus_tag="WHR98_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HEZ2307305.1"
                     /translation="MKALVAVKRVVDYNVKVRVKADGSDVDIGNVKMSMNPFDEIAVE
                     EAVRLKEAGKVSEIVAVSLGEKKCEETLRTALAMGADRAIHVETDTKLESLAVAKLLK
                     AVADKENPQIFFLGKQAIDDDANQVAQMLAALLNAAQGTFASKVHIEGGEVQIVREID
                     GGEETIALKLPAVISADLRLNEPRFVKLPNIMAAKKKPLEKLTPDDLVADISPRLKTV
                     KFAEPKARQAGVKVASVAELVEKLKNEAKVI"
     gene            15345..16280
                     /locus_tag="WHR98_000591"
     CDS             15345..16280
                     /locus_tag="WHR98_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HEZ2307306.1"
                     /translation="MSVLIIVEHDNKQLNPTTLHAVTAAAKLGKIDLLVAGSGASAVV
                     EFAKQVAGVEKVLVADAAHYAEGLAEELAPLVVKLAADYCYVAATATTFGKNLLPRVA
                     ALLDVPQISDLTEIVDNTTFVRPIYAGNAFETVQADSEKLVLTFRATVFDAVAAQGGN
                     AEVINVEATPAQNLSRFVNRQLSHSDRPELTQAKVIVSGGRALGSAEKFNEVLTPLAD
                     VLGAAIGASRAAVDAEYAPNDAQVGQTGKVVAPQLYFAIGISGAIQHVAGMQDSKVIV
                     AINKDADAPIFNVADYGLVGDLFEIVPQLTEVLKN"
     gene            16343..16954
                     /locus_tag="WHR98_000592"
     CDS             16343..16954
                     /locus_tag="WHR98_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEZ2307307.1"
                     /translation="MITTYKTITSSTQAEFKDKGSRFIAFAYPIRTLADVKKYLDPLK
                     EEHHKARHWCYAYRLGVDGMQFRANDDGEPSGSAGRPILGQIDSVGITDVLVVVVRYF
                     GGTLLGVPGLIHAYKEATAQALAVAEVVEKNIEKTVWLKCEYPFLNEAIRIAKQYQAD
                     VLERDLQLDCRLTVSLSLVNYEACVAAWKSTRQIEVNTEKPFE"
     gene            complement(17006..17323)
                     /locus_tag="WHR98_000593"
     CDS             complement(17006..17323)
                     /locus_tag="WHR98_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HEZ2307308.1"
                     /translation="MQKRIDEIQSKYREWCHLLPQLEEDIRRWKHAVALIRDMDNFYT
                     HEYQACHRAIEDGAEVDLRTEGEYSIMSEDALWNALGEFHQLAWLYLRSSVDALDKYT
                     QED"
     gene            17481..18752
                     /gene="purD"
                     /locus_tag="WHR98_000594"
     CDS             17481..18752
                     /gene="purD"
                     /locus_tag="WHR98_000594"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEZ2307309.1"
                     /translation="MKLLVIGNGGREHALAWKLAQSPKVETVFVASGNAGTAIEPKLQ
                     NIDLTAHQDLIEFCRKENIVFTVVGPEAPLAAGVVDDFRAAGLKIFGPTQYAAQLESS
                     KDFAKAFMAKYNIPTAQYQTFENADAAHDYVNQKGAPIVIKADGLAAGKGVIVAMTLD
                     EAHAAIDDMLLDNKMGNAGARIVIEDFLQGEEASFIVMVDGNNVLPMATSQDHKRLLD
                     GDKGLNTGGMGAYSPAPVVTPVVYERAMNEIILPTVAGMKAEGHEFTGFLYAGLMIDQ
                     SGAPHTIEFNCRFGDPETQPIMSRLNSDLSDLVEAAIDGKLDSVTAEWSPQTAVGVVL
                     AAQNYPETPKKGDVISGLDAANQVGKVFHAGTTANEKGDVLTNGGRVLCVVGLGDNVA
                     QAKAKAYGALEKISFDGMQYRKDIADKAINR"
     gene            18786..19388
                     /locus_tag="WHR98_000595"
     CDS             18786..19388
                     /locus_tag="WHR98_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEZ2307310.1"
                     /translation="MTDVLQTVFYIMLFPRIIAASAQRKLSVYLKKGGLVAYPTESCY
                     GLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSENLQDMLRKEWPA
                     PKTFLLSAKSCVLPELRGKQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRAC
                     RTEREVRRQFGRDVWIVGGRIGRQKSPSQIIDGETGKRLR"
     gene            19403..>19758
                     /locus_tag="WHR98_000596"
     CDS             19403..>19758
                     /locus_tag="WHR98_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307311.1"
                     /translation="MKTFLHTQRKNFSDSISLHDCYCTEIKVEGRNVCFNFEDGFVVP
                     DNNPNNQAGKHLKTDFSRVVLTHKNENAEDDYLFDIFEDIVFLGKRLFTVRKFLDFSE
                     LLEMVNTQGYFLEFLY"
BASE COUNT         4795 a         4425 c         5521 g         5017 t
ORIGIN      
        1 ttaattgttt ctgtatcgca aacactgatt gaaaaggact gattatggca tttttaaaac
       61 tgaccgaaca aaacgtgcag ggcaaaaccg tcctcatccg cgccgatatg aacgtgccgt
      121 tcaaagacgg caaaatcagc gacgacaccc gtatccgcgc ctcgattgcg tccgttaaat
      181 actgcgtgga caacggcgcg tccgtcatcg tgatgaccca cttgggccgc ccgaccgaag
      241 gcgagtttca ccccgaagac gacgttgcgc ccgttgccgc gcatttgggc ggcctgttgg
      301 gcaaaaacgt gaaagtattg aacgactggc gcgaaaacaa accggctttg aacgcgggcg
      361 atgtcgtgat gctgcaaaac gtgcgtatca acaaaggcga gaagaaaaac gatttggaac
      421 tgggcaaagc ctacgcttct ttgtgcgacg tgttcgtcaa tgacgcgttc ggcaccgcgc
      481 accgcgccca agcctcgacc gaagccgtcg cccaagccgc tcccgttgcc tgcgccggcg
      541 tattgatggc gggcgaactc gacgctttgg gcaaagcctt gaaacagccc gcgcgcccta
      601 tggttgccat cgttgccggc agcaaagtgt ccaccaagct gaccatcctc gaatcgctgg
      661 cggacaaagt cgaccaactc atcgtcggcg gcggtatcgc caacaccttc ctgttggctg
      721 aaggtaaagc catcggcaaa tctttggcgg aacacgattt agtggaagaa tccaaaaaaa
      781 ttatggcaaa aatggcggac aaaggcggtt ctgtgccgct gctgaccgat gtcgtcgttg
      841 ccaaagcctt tgccgccgat gccgaagcgg tcgtgaaaga cattgccgac gttgccgaag
      901 atgagatgat tttggacatc ggcccgaaat ccgccgccgc gcttgcggag ttgctcaaag
      961 ccgccggcac ggtcgtatgg aacgggccgg tcggcgtgtt tgagtttgac cagttcgcag
     1021 gcggtacgaa agcccttgcc gaagccattg cccaaagcaa agcattctcg attgcaggcg
     1081 gtggcgacac gctggcggcg attgctaaat tcggcgttac cgaccaaatc ggctatattt
     1141 ctaccggcgg aggcgcgttc cttgagttct tggaaggcaa agagctgcct gccgtagctg
     1201 ctttggaaaa acgcggcgcg taagcggttt gatataaaaa atgccgtctg aaacgttgtg
     1261 ctgtttctga cggcattttt gtgtggcgat tattgtgctt tggctgccca ttccgccgga
     1321 gtggcggcaa ccgaaatgga aagtgcgtgc agttcgttac tttccagttg ggctttgagt
     1381 ccgtctttaa tcaggcggtg gcgcgcgagg cgtgccttgc cttcaaattc tgatgaaacg
     1441 atgacggcga aaaaatggtg tccgtcgcct tctacttcga tgtgttcgca ttttgccacg
     1501 ccttcaatca tggcttttac ttgttccgag gtcagcatgg taggttcctt gttggaaaaa
     1561 tgcgccatta tactggcaaa ttgaaatgcc gtctgaaaac gggttcggac ggcatttttg
     1621 acggtgtttt attttttggc tttgaagccg agcaggtgct gggtggtggc aagccacgcg
     1681 ccgaatacgc ccaacgcgat gacgaagccg aacaccagcc cgagttcgcc agcgtagaag
     1741 aaccgccagc cgatattaag tccgtagggt ttgaaaatgg catcgaccaa tgggcgcacg
     1801 gcagagagca gccaaccgca aagccccaag ctgacggcgg cggaaaggat gctctgccac
     1861 atggcttgat aaaggaaggg gcggcggata aacgacgcgg gcgcgcccaa gagtttggtg
     1921 atttcgattt cttcttttcg gctgaggatt tgcagtcgga tggtgttgtg cgcgacaagg
     1981 acgaacgcca tccccagcgt cagggaaaga aaccataaga ttttacggat gaattcgttg
     2041 atttggtaca gtgtctgtac ccattccgta tccatgttgg cggattcgac cataggcagt
     2101 ttggtaatgt cccggtagat tgcctgcatt tgggcgggcg tggttgccag gtcgggggta
     2161 acgataaaga catccggcag ggggttgccg tcaagcatgg aaatcagatt ttggtcgaga
     2221 ttggactgta attcttccaa accgtcttct ttgctgataa agcggatgtt gtcgagtcgt
     2281 ttgtcgcgcg ccagcaggct gcggacggta tcgctgtcgc tttgtgcggc ggcggtttcc
     2341 atatagacgg tgatttgcgg cgactcattg agtttgccca acacgctttg cccgctttgg
     2401 atgcccaagt acataaacag cggcagggtc atggcgacgg cgagcattat gagggtaagc
     2461 agtgtgccga aaggttggcg cagaagctgt ttgagcgcgg tgcgcgcgga ttcgacgtgc
     2521 agcgagaggt agtggatgat gctcatgcga gtcgtccttt cgagaggcgc aggatgcggt
     2581 gtccgtagtc cgccatcagg gtttcgtcat gtgcggcgac gatgacggtt gttcccgctt
     2641 cgtggaaggt tttgaacaat tccataatat cgagcgcgta ggcgcggtcg aggttggcgg
     2701 agggttcgtc ggcaatcagc aggctgggct ggtgaacgac ggctcgggca atgcacaggc
     2761 gttgttgttc accgcccgag agggttacgg gatcgtccaa ttctcgccct ttcaagccga
     2821 ctttttcaat ggcgatgcgg gcgcgttctt cggctttgcg cggcggataa ccgataatcc
     2881 gaagcggcag gatgacgttt tgcaggacgt tgcggtcgta gaggattttg tggtcttgga
     2941 acacaatgcc gatgtgttgg cgcataaagc cgatttggtt gtcggacaat gtgccgaggt
     3001 cctgcccgtt aaacaggatt ttgcccctgc tcggcttggt gatgcccgaa atcagcttga
     3061 ggacggtgga tttgcccgaa ccggagtgtc ctgcgataaa tatcatttcg cctttgttga
     3121 tttggaagct gacgtttttc agggcttcaa aaccgccggg ataggttttg gaaacttgtt
     3181 cgaaacggat cataggaggt cctgtaagga atgggcggca tatcgtttcg ggcggttgcg
     3241 tccgcaggga tatgccgtct gaacaatagg taagacagtg ccgattataa agattccgcc
     3301 tgtttttaga tagtggataa gtttggcgga taccgaaggt cgggcgggaa aaatgccgtc
     3361 tgaagcggat tcagacggca tccggcgttt aacggcattt tgaatgggcg agtttgacgg
     3421 cttcggtcag gcttttttcg ttcacttccc cggtaatggt ctgcctgtat ccgcatttcg
     3481 gtgcttcgac gacggtaaag ggcagtacgc cgacagtgtt tccgtaggtt ttcataaagt
     3541 ttcggctgtt cgccccagtg taacgccaaa tcgggtagga aacaggagtt tgtttgagga
     3601 agttgccgat attgtcggat gtgtcgagcg cgatgccgac catatcgacg ctgccttttt
     3661 tctgcgcttt gtaccatttg gacatggcag gcatctcttt tcggcacggg ccgcaccagg
     3721 ttgcccaaag gttgacgatg cgtacggggg ctttgagtga ttgcaggctt tgtggggtgt
     3781 tgtctttcca tccggccagt tcgtctgccg aggcggtatg tgcggcaaat gtggcggcaa
     3841 gggtgattgc ggcaagattc aagtatttca tcgttttgtc ctttgtatgt cgattcgggt
     3901 attgtaaacc gtttggtacg gttgtaggcg ggatattgag taaaaccctg tgtaagccga
     3961 taataagggg attgtcgaga agtaaggaaa tgtcatgtct gaaatcaaaa ttttccacaa
     4021 cccccgttgc agcaaatcgc gtgccgcctt gtccttattg gaagaacgcg gcattgctgc
     4081 cgaagtggtc aaatatttgg atacgccgcc cgacttgtcc gaattgaagg atattttcaa
     4141 caaattgggc ttggagtcgg cgcgcgggat gatgcgtgtg aaagatgatt tgtacaagga
     4201 attgggtttg gacaaccctg atttggacaa tgacgcgctg ctgcgtgcca tcgccgatca
     4261 tcccgccctg ttggagcgtc cgattgtttt ggcgaacggt aaggcggctg taggcaggcc
     4321 tttggaaaat atcgaagcgg tattgtgaaa aaacggctgt tttgcagccg caacggcttg
     4381 cgctattacc tgttgggcgg tttctgtttg agtgtttttc cgcttttgct ggtgtttgcc
     4441 tcatccgttt gggcggttta tcggacgggc ggtcaggttt tgccgccgta tgtccgggcg
     4501 gatgccgcgc tggtgttggg cgccgccgcg tgggacaaac gcccttcccc ggtttttcgg
     4561 gaacgcatca accacgccat cgcgctttat cagagccgca gggtcggcaa aatcattttt
     4621 accggcggca ggagtaaaaa gggttatatg acggaggcgg aagtcgggcg gagatacgcg
     4681 ctcaagcaag gaattccgcc gcgcaacatc ctgtttgaaa acacttcgcg caacacttat
     4741 gaaaacctga acaacatccg tccggttttg cgtgccaacg gtattgccag cgtggtgatt
     4801 gtcagcgatc cctaccattt ggcgcgggcg gcggaaatgg cggaggattt gggtgtccgc
     4861 gtttatatgt ctgccacccc gaccacgcgg tttgatgcgg gaaataagaa aaaaatcttt
     4921 atgctgcaag agggatatgc gttatccctc taccgtttgg aaaaatgggg gcgggatttt
     4981 ttcaattggc tgtttcattg aacctttttt tcggacgcaa tcccgaagga acccggtcgg
     5041 cggcgcgtga tacactgttc cgcgtgccga agcattgaaa acaaggaaaa tgccgtctga
     5101 aacttatccg caggcagggt tcggacggca tttttaatgc ccaagcacgg taaaaacagt
     5161 aaaataagcc gttttaaaga ttctggagcc atcatgaccg tcaaaacccg tttcgccccc
     5221 agccccaccg gctacctgca cattggcggc gttcgcaccg ccttgttttc atgggcgttt
     5281 gcccgccatc acaaaggcga gttcctattg cgtatcgaag acaccgactt ggcgcgttcc
     5341 accgccgaat ccgtcaacat catcctcgac ggcatgaaat gggtcggtct cgattacgat
     5401 aacgccgaca acgtggtgta ccaaacccgc cgcttcgaac gctataaaga agtcatcgcc
     5461 gaactcttgg caaaaggcga tgcctactac tgctattgca gcaaagaaga attggaagcg
     5521 atgcgcgaga aagccgaaaa ggaaggcacg gcgacttacg accgccgctg gcggccggaa
     5581 gcaggcaaaa ccctgcccga aatccctgcc ggcgtgcaac ccgtcgtccg cttcaaaacg
     5641 cctttggacg gcgtaaccaa gtgggcggac ctggtcaaag gcgaaatttc catccccaac
     5701 gaagccctcg acgacctgat tattgcacgc gccgacggca caccgaccta caacttctgc
     5761 gttgtcgtag acgactacga catgggcgtt acccacgtta tccgtggtga cgaccatgtg
     5821 aacaacaccc cgaaacaaat caacatatta aaagccatcg gcgctaccct gcctgaatac
     5881 gggcacctgc cgatgattct caacgaacaa ggcaaaaaaa tctccaaacg cagcggcgat
     5941 accgttgcca ttaccgattt cggcgcaatg ggcatcctgc ccgaagccat gctcaactat
     6001 ctggcacgtt tgggctgggc gcacggcgac gacgagttct ttacgatgga acaattcatc
     6061 gaatggtttg atttgaaaga cgtttccccg tccccaagcc gtatggattt gaaaaaactc
     6121 tattggatca acggcgaaca catcaaaatc acgcctaacg gcaaactcgc cgaactcgtc
     6181 aaaccgcgtc tcgctctgcg cgatatccat gaaactgaaa aacctgcgtt ggaagacgtg
     6241 ttggcacagg tcaaagaccg cgcccaagat ttgaacgcct tggcagacga atgtctgtat
     6301 ttctacaaaa aacaagtccc tgccgaagcc gatgttgcca aacactggga tgacgaagcg
     6361 gcggcacgca tgctgcgctt tgccgaacgc ctcgagggtt tggaagactg gaataccgaa
     6421 gccatccacg acctgttcaa acctttctgt gacgaagaag gcattaaaat gggcaaactc
     6481 ggcatgcctt tgcgcctcgc tgtctgcggc acggcgaaga ccccaagcgt cgatgccgtg
     6541 ttggcattaa tcggcaaaga ggaagtgttg aaacgcatcc gcgcttaagt tatccacagg
     6601 agtgggcgat gccgtctgat gtcggaatac ggcttcagac ggcatttaaa cggaagttta
     6661 aaatgaaaaa aatattttat tttctgatgg ttgttttttc tacaagcgta tgggccgggg
     6721 atgcggaaga caatctgctc agcatccaat ccggctatcg tgccttactg caaaagcaaa
     6781 acaatctgga cggaaaaatc atcgggatgc agtcggattt ggaagatgcg cgccggcgtt
     6841 tgcaggcggc acaggcggat attaaccgtt tggaagcgga aattcctgca gcaatggcgc
     6901 aaaaagcccg gcaggctgaa gagctgaggc aaatcggagt gcgtttggac catgcttgga
     6961 atgcggttta cggcgcaggg ggaacgaagg cgtcggggaa ttgaccgatg aattccctct
     7021 ttgtggacaa tactgttttc attacacggc tgaaagccgg gcatatcggc aggttggttc
     7081 aggcgttgtt tgaggagtgg cacggatttg aaccgtggtc ttctgtggat aagattcgtg
     7141 cctattacgg cagatgtttg aaagatgacg aactgccgct ggcttttgcg gctgtggatg
     7201 atttcggaac cctgttgggt tcggctgcgg tcaagcggca tgatatggaa agttttccac
     7261 agtatgaata ttggttgggt gatgtctttg ttttacctga atatcgcgga aaaggcattg
     7321 gcaggaggct ggtcgcccac tgcataggcg cagcgcgttc gctggggata aagttcttgt
     7381 atctttatac gcctgatgtg caaatatttt atgaatcatt cggctgggcg gttgtcgggc
     7441 gacatttcca taacggcgaa tgggttacgg ttatgcgttt ggatatggat aaggtttaag
     7501 ccgaatggac aaatgccgtc tgagctgttc ggacggcatt ttttatgttt ggaaacttcc
     7561 tgtcagataa tatttatcca cagatttttc catatggttt gatgctgttc cgacaacgga
     7621 aattaagata cggatttgca caaatctttc agacggtaca gttctgacaa tgcttcgcgc
     7681 ggggtcaggc tgtcgggatc gagtttctcc agggctgctg ccaatatacc ttcaaaatgt
     7741 ttttcctctg ctttgtccac aaagctgtcc acattcggtt catctccttt ttcagacggc
     7801 atggtactga aaatatccag ttggggacgg tttgcggcgg cttggttttc cagtccgttc
     7861 aaatgctttt gggcggattt caatgcgcgt acaggcaggc cggcgagttt ggcaacggcg
     7921 atgccgtagc ttttgccggc gggaccgggt tggatttggt gcagaaacac gatgtcctgt
     7981 ccctgttcga gcgcggaaag gtgcatattg acggcggcgg cgtgggcttc gggcaggtag
     8041 gtcagctcga aatagtgggt ggcaaacagg ctgaaggatt tgtttttttg cagcaggtgt
     8101 tcggcaacgg cgtgcgcgag ggcgaggccg tcgaaagtgg aagtgccacg tccgacttcg
     8161 tccattaaaa caaggctttg ttcggtggcg tgatgcagga tgtaggcggt ttcgctcatt
     8221 tcgaccatga aggtggagcg gttggaggcg aggtcgtccg atgcgccgat gcgggtgaag
     8281 atttgatcga tgggtccgat tgtggcggca tcggcaggca cgaaacagcc ggtgtgtgcc
     8341 aataaaacaa tcagcgcgac ttggcgcatg taggtggatt tgccgcccat attggggccg
     8401 gtgagcagca tgaggcggtg tttgtggtca aggtcggtgt ggttggcggt gaagtggcgt
     8461 acctgctgtt cgacaacggg atggcggccg ttttcgatgt ggataaccgg atagtcggca
     8521 aactcggggc ggacgaagtt ccgctctttt gccaaggctg aaaatgtgga caatacgtcc
     8581 agcgcggcgg cggctttggc ggctttttga agctgcggca atgccgtctg aaggtttttc
     8641 aatacgccgt caaagagttg tttttctaag gcgagggctt gctcttgagc agtcagcact
     8701 ttgtcttcaa aggctttcag ttccggcgtg atgaagcgtt cggcgttttt aagggtttgc
     8761 cggcgttggt agtcggcagg tgcttgttcg gcttgggttt tggacaattc aatgtaaaag
     8821 ccgtgaacgc ggttgaactc gactttaagt gtggacaaac cggtacgttc gcgttccttg
     8881 gcttccaaat ccagcaaaaa ttcgtcgcca tggttttgaa tgcggcgcaa ttcgtccagt
     8941 tcgggatgaa aaccgtggtt gatgacattg ccgtctttca gccagacgga aggttcgggc
     9001 aaaatggctt ggcggagctg ttcggctgtg gataggtttt ccgggaaaac ggctttgagg
     9061 gttcctaaga gactgctgca ctcggcggac aattcgattt cggacagggc aaacaggctg
     9121 tcgcgcaggg cggcgaggtc gcgcgggcgg gcgttaccca cggcaatacg ggcggcgatg
     9181 cgttcgatgt cggcaatgct tttcagacgg cactggaggg gtttgtattg gctttccagc
     9241 gcggcaacgg cttcttggcg cgctcggatg tgggcgcggt tgcgtaaagg gtggtgcagc
     9301 cagagagcca agaggcggct gcccatatgg gtagcgcaaa ggtcgagcgt ggacatcagg
     9361 gtcggcgatt ttttgccgga gagggtttgc gtgatttcga gattgcggcg cgtggcggca
     9421 tccataccga tatattggct gtcggtttcg agcgacaggc cgtccaaatg ttgcggcatc
     9481 aggttttgcg tcagacggat atagttcaac agtgcacctg ccgcgccaat cgcaacggcg
     9541 tgttctttgc cgtccaaacc gaagccgcgc aaatcctggc agccgaaata ttccgtcagc
     9601 agtttttccc ccgcgtcggc ggcaaactgc cacgcgttca ggcgcgtaac acccgatgcc
     9661 gtctgaagtt gcggtgcgtt tttactgtcc ggcaacagaa tttccgccgc ctgcaggcgc
     9721 gccagttcgt cgtccaattt atccacagtt gtcagcttgg ttttgaattc gccgctttgc
     9781 agcgatgccc acgccaaacc gatgtatttt ttgtcggggg acacggcaac gatgcggttg
     9841 gtttccttgt cttccagcaa tgcggaatcg gtcagcgtgc cgggcgttac gatgcgcacg
     9901 actttgcgct ccaccggtcc tttgcccgcg ccgacttcgc cgacctgttc gcaaatcgcc
     9961 acgcttttgc ccaacttgac caggcgcgct agatattgtt cggcggcgtg aaacggcacg
    10021 cctgccattt tgaccggctc gccatccacc tgtccgcgcg tggtcagggt aatatccaaa
    10081 agttttgccg cttctaccgc atcgtcgaaa aacatctcgt aaaaatcacc catgcggtaa
    10141 aacaccagtt tgtcggtatg ttgcgctttg atgccgaggt attgctgcat cattggggaa
    10201 acggcggatt tggacatggg gctgccttat cattaggaaa acggtattgt agcaaaaggt
    10261 tttgtcttcg acggaatgag actgaccgta agcctgtcaa taaggttgtg gagacaagta
    10321 ggaaaacagc aaagttatcc acggagatat tattaagtca aaaaacatcc acgtttatct
    10381 gtcctatacg gcaagcctta aactcaaact tatttgacga aaaggtaatg aaaatattgg
    10441 atatttgcaa cttatacaca agcagatccg caatcatcaa aatcatcatt aaaattttaa
    10501 attcaaatat tgatggtaaa agttttggaa atctgtgcaa acagtaaaat tcatctatat
    10561 caaataagca tcaagtagtt agatgtaata gtggaatgta actttatttc agaatacaat
    10621 acagatattg aaatttcgtt tcacagcttg gagtatatac atgagcatta aagtagcgat
    10681 taacggtttc ggccgcatcg gccgcctcgc attgcgtcaa attgaaaaag cccacggcat
    10741 cgaagtcgtc gctgtcaacg acctgacccc tgccgaaatg ctgctgcacc ttttcaaata
    10801 cgacagcacg caaggccgtt tccaaggtac tgccgaatta aaagacgatg ccatcgtggt
    10861 aaacggcaaa gaaatcaaag ttttcgccaa tccgaatccc gaagaattgc cttggggcga
    10921 gttgggtgtg gatgtcgtcc tcgaatgtac cggcttcttt accaataaaa ccaaagccga
    10981 agcacacatc agggccggcg cgcgcaaagt cgtgatttcc gcacccggcg gcaatgatgt
    11041 gaaaaccgtc gtatatggcg taaaccaaga cattttggac ggcagcgaaa ccgttatctc
    11101 cgccgcttcc tgcaccacca actgccttgc cccgatggcg gcagtcctgc aaaaagagtt
    11161 cggcgtagtc gaaggtctga tgaccaccat ccacgcctac accggcgacc aaaacaccct
    11221 tgacgcgccg caccgcaaag gcgatttgcg ccgcgcccga gccgccgcgc tcaacatcgt
    11281 gcccaacagc accggtgccg ccaaggccat cggtctggtt atccccgaat tgaacggcaa
    11341 actcgacggc tccgcccaac gcgtccctgt tgccaccggc tcgctgaccg aattggtttc
    11401 cgtcctcgaa cgccctgtaa ccaaagaaga aatcaacgcc gcgatgaaag cagccgccag
    11461 cgaatcttac ggctacaacg aagatcaaat cgtttcttcc gacgttgtcg gcatcgaata
    11521 cggctcgctc tttgacgcaa cccaaacccg cgtgatgacc gtgggcggca aacaactggt
    11581 gaaaaccgtt gcctggtacg acaacgaaat gtcctacacc tgccaactcg tccgcacttt
    11641 ggaatacttc gcaggcaaaa tctaaggctt gaacaaacct gtggataagt aaatgccgtc
    11701 tgaacacatt gcgttcagac ggcattgttt atctgtatag tggattaaat ttaaaccagt
    11761 acggcgttac ctcgccttgc cgtactattt gtactgtctg cggcttcgtt gccttgtcct
    11821 gatttaaatt taatccgcta taacttgata ttgcggctta tggcgaacaa acaacagccg
    11881 tttgttcaac tgctatgcgg caaaaccgga tttttgcccg atttaaagcg gggttgggga
    11941 aagatcaata acggttgcac ggttttcctc gatttgaaat ctgatttcgt aatccgcaat
    12001 attcatcaca taaatccgtt cgggaatatt ctgataggcg gggcgcggat cttgggcaat
    12061 gctttggctg ataaggtttt tggtgtttgc agataaattt tccgcgccga tgttttcctg
    12121 ccaaacgact tccaactcta cgggtttgcc gctgacgaaa ccagatgcgg catcgggttt
    12181 ggattcgaca aaggggatat aaggcttgat gtccacaatc ggcgtgccgt cgagcaggtc
    12241 tgcgccgctg caataaaggc ggacgggttt gccggtttcg atgcggttga gttttaagag
    12301 tgatagtccg agatggttgg ggcggtgggg gctgcgcgtg gcgaatacgc ccattttttg
    12361 tttgccgccg agccgtggcg ggcgcaccat ttgtgcccag ccttcatcca atacgccgtg
    12421 aaaaataaaa cttatccaca cataatcgaa atcttccagc ccgcgcacgc tgtctgcggt
    12481 aaattcggga ttcagctcga tgcatacttc tgcggcggag actaaaccgg gctggcgggc
    12541 gatgccgaat ttctgtttgt agggcgatcg ggcggtggcg atagggacga tggtgtaagt
    12601 catgaggatt gtggataagt ttttcggaaa aaccttatct tatcacagcc tgttttaccg
    12661 cttttgggca gtaatttgtt ataatacagg gcattttaat tgcgttgaaa tgatgagatg
    12721 attgtttcca ttgatgttga tgcacaaaaa acttttacgc ctttgtgtcc taaagagctg
    12781 cctgtaaacg aggggcattt gattgtcgaa gaattgaatg cccaagccgc tttggcggat
    12841 ttgcgcgtga tgacgaaaga tgcgcatcat atggtagcga aatggcttgt ggataaccct
    12901 gttgatatgt tgaagccgac aggtttgcct gatgcggatt tgacttgggt ggctcatgcg
    12961 atggtcggta cgcgcggcta tgaattattg gacggactgc cttctgccaa agaatacgat
    13021 tattgcgttt ggaaaggtgt tgatcctgaa ttgcatcctt acggcgcgtg ttttcacgat
    13081 attgaggaaa aactgagcac tggattgatt gagtggctgc gttgtcaaaa tacggatatg
    13141 gtcattgtcg gcggtttggc tacggattat tgtgttaaaa caacggtttt gcagttgctc
    13201 aaaggtagca attggcaggt tatcgtcaat gaagcggctt gtcggggtat tgcgccggat
    13261 accattgaaa cggcatggca ggaaatgcgt tctgccggtg ctgtcatctt aaaaaacgcc
    13321 gaagaaatta aaaaatatat taataatcaa taagttaaaa tcgtttcacg tgaaacatac
    13381 ttcttaaata tgaaaatttt gcttgtccgc ttgtctagta tgggcgattt aattcacact
    13441 ttgcccgcaa tcgaagattt ggcgcgacaa tgtcctgatg tagaactgca ttggctatgt
    13501 gaggctggat ttgcagatat tgcgcgcctg catccgtttg taaaaaaaat ccatgtgatg
    13561 aaatggcggc aatggcgcaa acatctcttt caggctgaaa cttggcggga aatgggtcat
    13621 ctgaaacaga ctttgcggca ggaagcattt aattttgtat tggacagtca aggtctgatt
    13681 aaaagcgcgt gtttcgctaa aatggcgaaa tcccctattt atggtttgga taaaaatagc
    13741 gcgcgcgagg gactggctgc gctggcgtat gcgaaaacat acgctgtacc gaaagggaaa
    13801 aatgctgttt ggcgcaatcg tgagctgttc gcccaagtat ttgggtatgc gatgcctgaa
    13861 acgcaggtat ttggcttgac tgttcctgag gcaggccgtc tgaaaaattt agcgcagccg
    13921 tattatgcgg ctttgcatgc gaccagtcgg gacagtaagt tatggcctgt ggaaaactgg
    13981 cggtcgttgc tgcaaaagtt gaatgaagaa cagcaatgca atatttacct gccttgggga
    14041 aatgaagatg aaaaaacgcg tgccaaacaa attgcagacg gactgccgtt tgctattgtg
    14101 tgcgataaaa tgaatttatt gcaggcagcg tatctgctga aacacgcggt cggaattgtt
    14161 ggcgtggata ccggtttgct gcatttggca aacgccttgg aaaaacctgt ggtcggcatt
    14221 tataccgata ccgatccgat taaaacaggc gttcaggttt cgccaattgc aaaaaatttg
    14281 ggcaatatcg ggcagattcc gaccgcagat ttggtttatc aagcgctgat ggattgtgtt
    14341 gcagcagata aaggctaaag ggtcgtctaa aactgatatg gcggcatgat attttccaat
    14401 ttattagata caggaatgta tatccgctag tctgagtaaa tgctttaaaa atggtataat
    14461 cggcaagcat tatccgaaag atttttgaat gaattcgttt ttaaggaaaa cggatttggt
    14521 tttataggga agaaggtttg gtttcgctgg atggtgaaag cagcgttctt tttaggaggg
    14581 ttcaatgaaa gcactggtcg cagtaaagcg cgtagtggac tacaacgtca aagttcgtgt
    14641 aaaagccgat ggttcggatg tggatatcgg caatgtcaaa atgtcgatga atccgtttga
    14701 cgaaatcgct gtggaagaag ccgtccgttt gaaagaagcc ggaaaagtaa gcgagatcgt
    14761 agcggtttct ttgggcgaaa agaaatgcga agaaacgttg cgtacagctt tggcgatggg
    14821 tgccgaccgt gccattcatg ttgaaaccga tactaaactg gagtctctgg ccgttgctaa
    14881 gttgctgaaa gccgttgcgg acaaagaaaa tccgcaaatt ttctttttgg gcaaacaagc
    14941 gattgatgat gatgccaatc aagtggcgca aatgctggca gctttgctga atgcggcgca
    15001 aggtacgttt gcttcaaaag tacacattga aggtggtgaa gtacagattg tgcgcgaaat
    15061 tgatggcggc gaagaaacca tcgcattgaa actgcctgct gttatcagcg cggatttgcg
    15121 tttgaacgag ccgcgctttg tcaaactccc caatattatg gcggcaaaga aaaaaccttt
    15181 ggaaaaactg actcctgacg atttggttgc cgacatttca cctcgtttga aaacggtgaa
    15241 atttgccgaa cctaaggcgc gtcaggcagg cgtaaaagta gcaagcgttg ccgaattggt
    15301 tgaaaaattg aaaaacgaag ccaaagtgat ttgaggaggc tgaaatgagt gtattgatta
    15361 ttgtcgaaca cgacaacaaa cagttgaatc ctaccacttt gcatgctgtt accgctgccg
    15421 ctaagctggg taaaatcgat ttattggttg ccggaagcgg tgcatctgct gtggtagagt
    15481 tcgcaaaaca agtggcgggt gtggaaaaag ttttggttgc agatgctgcc cattatgccg
    15541 aaggtttggc tgaagagttg gctccgctgg ttgttaaatt ggcagcggat tactgctatg
    15601 ttgcagcaac ggcaactaca ttcggtaaaa accttttgcc tcgcgtagca gccttattag
    15661 acgtaccgca aatttctgat ttgaccgaaa ttgtggataa cacgactttt gtgcgcccca
    15721 tttatgcggg taatgcattt gaaaccgtgc aagctgattc agaaaaattg gtgctgacct
    15781 tccgtgcgac ggtttttgac gcagtggcgg cgcaaggtgg taatgctgag gtaattaatg
    15841 ttgaagcaac ccctgcccaa aacctgagtc gttttgttaa ccgtcagctt tcccattccg
    15901 atcgtcctga actgactcag gcaaaagtga ttgtttccgg tggtcgtgcg ttgggtagtg
    15961 cggaaaaatt caatgaagtg ctgacaccgt tggcggatgt tttaggtgcg gcaatcggtg
    16021 catcccgtgc ggcggttgat gccgaatatg cgccaaacga tgctcaagtc ggacaaaccg
    16081 gtaaagtagt tgcgccgcaa ctctattttg caatcggtat ttcaggtgcg attcaacacg
    16141 ttgccggtat gcaagacagt aaggtgattg ttgcaatcaa taaagatgct gatgcgccga
    16201 ttttcaatgt agccgattac ggattggttg gcgatttatt tgaaatcgtt ccacaattaa
    16261 cagaagtatt gaaaaattaa tgtttcacgt gaaacgttca gacgaccttg ttattaatga
    16321 ggtcgtctga aaacatttca gcatgattac gacttataaa accattactt cctcgacgca
    16381 ggctgagttt aaagataaag gcagccgttt tattgcattt gcctatccga ttcggacatt
    16441 ggctgatgtg aaaaaatacc tcgatccgtt aaaggaagag catcataaag cacgacactg
    16501 gtgctatgcc tatcgtttgg gtgtggatgg catgcaattt cgtgccaacg atgatggaga
    16561 gccatcagga agtgctggac gaccaatttt gggacagatt gattcggtgg gtattaccga
    16621 cgttttggtt gtggtcgtcc gctatttcgg tggtactttg ttaggtgttc caggtctgat
    16681 acatgcgtac aaagaggcga cggctcaagc gttggcagtt gcagaagtag ttgaaaagaa
    16741 tattgaaaaa actgtttggc tgaaatgtga atatccgttt ttgaatgaag cgatacgcat
    16801 tgctaaacaa tatcaggcgg atgtattgga gcgggatttg cagttggatt gccgattgac
    16861 ggtcagtttg tcgttggtaa attatgaggc ctgtgttgcg gcttggaaga gtacacggca
    16921 gattgaagta aatacggaaa agccttttga atgaaaggtc gtctgaaatg ctttgtgatg
    16981 gtatttcaga cgacctcttc gctgactaat cttcttgtgt atatttgtct aaggcatcga
    17041 cgctggagcg caaatataac caagccagtt gatggaattc gcccagcgcg ttccatagtg
    17101 catcttcact cataatgctg tattcgcctt ctgtgcgcaa atccacctcc gctccatctt
    17161 caatagcccg atgacaagcc tgatattcgt gggtataaaa attgtccata tcgcgaatca
    17221 aagcgacggc atgtttccaa cggcggatgt cttcttccaa ttgcggtagt aaatgacacc
    17281 attcgcggta tttgctttgg atttcatcaa tacgtttttg catggttgct tgtccttttt
    17341 taatttatga ataagttgaa taggttgcag agtggaatga agcggtcttt tgtttgattc
    17401 tactaaaatt tcttcagatg ggataaaagt ccctttgtat cgagttttcg ttaaaagtac
    17461 atatttgtca aggagatggc atgaaactgc tggttatcgg taatggcggt cgcgaacacg
    17521 cgctggcttg gaaattggcg cagtcgccta aagtggaaac agtatttgtt gcgtctggta
    17581 atgccggtac agcgattgaa cccaagctgc aaaacatcga cttgactgcg catcaggatt
    17641 tgattgaatt ctgtcgtaaa gaaaatattg tttttaccgt cgtcggccct gaagcgcctt
    17701 tggcggcagg tgttgtggat gatttccgtg ctgcaggact aaaaatattc ggtccgacac
    17761 aatatgcggc gcagttggaa agttccaaag atttcgccaa agcatttatg gcgaaataca
    17821 atattccgac cgcgcaatat caaacctttg aaaacgccga tgccgcacat gattacgtca
    17881 atcagaaagg tgcgcctatc gttatcaaag ccgatggttt ggcggcaggt aaaggcgtga
    17941 ttgtggcgat gactttggat gaagcgcatg ctgcgattga tgatatgctg ctggacaaca
    18001 aaatgggcaa tgccggcgcg cgtattgtga ttgaagattt cctgcaaggc gaagaagcga
    18061 gttttatcgt catggttgat ggcaataatg tactgcctat ggcaaccagc caagaccaca
    18121 agcgtctttt agacggcgac aaaggtctga atacgggcgg tatgggtgcg tacagccctg
    18181 cgcctgtggt aacgcctgtt gtgtacgaac gcgcgatgaa tgaaattatt ttgccgaccg
    18241 tagcagggat gaaagcggag gggcatgagt tcaccggttt cctgtacgca ggtttgatga
    18301 ttgatcaaag cggtgcaccc catacgattg agtttaactg ccgtttcggc gatcctgaaa
    18361 cccagccgat tatgagccga ctgaacagcg acttatcgga tttggttgaa gcggcaatag
    18421 acggcaaact cgatagcgta accgcggaat ggagcccgca aactgccgtg ggcgtggtac
    18481 tggcggcgca aaattacccc gaaacgccca aaaaaggcga tgttatttcc ggtctggatg
    18541 ctgccaacca agtaggcaaa gttttccatg caggtacaac ggcaaacgag aaaggtgacg
    18601 tattgaccaa cggcggacgc gtattgtgtg ttgtgggatt gggcgataat gtggcgcaag
    18661 cgaaagctaa ggcatatggc gcgttggaaa aaatcagttt cgacgggatg caataccgta
    18721 aagacattgc cgataaagcg attaaccgtt aattagaaag aggatgatgc cgtctgaagc
    18781 caagtatgac tgatgtgctt cagacggtat tttatattat gttatttccg agaattatcg
    18841 cagcatcagc gcaacgtaag ttaagcgttt atttgaaaaa aggcggtttg gtcgcttatc
    18901 cgaccgaatc ttgttatggc ttggggtgtc ttccgacatt agccaaagca ctcggtaagt
    18961 tggcgcattt gaaaaaaaga ccgcaacaca agggtatgat tgtcatcggg aatcaatttg
    19021 agcaattgca gcctttactt caaatgccgt ctgaaaatct tcaggatatg cttagaaaag
    19081 aatggcccgc ccctaaaacg ttcctattat ccgccaaatc ctgtgtctta cccgagttac
    19141 gcgggaaaca gcgcagcaag ttggcggtca gggttcccgc ccatgtaggt gcgcgccgct
    19201 tgtgtcaggc tttgcaaacg cctttggtct cgacttcgtg caaccgcgca ggcaaacgcg
    19261 cgtgtcggac ggagagggaa gtcagaaggc aattcggacg cgatgtgtgg attgttggtg
    19321 ggagaatcgg caggcagaaa tcgccgagtc agattattga cggggaaaca ggtaaacgtt
    19381 tgcgttagat atgggtactt gaatgaaaac ttttttgcat acacaaagaa aaaatttttc
    19441 ggatagcatt tctctacatg attgttattg cacagagata aaggtagaag gacgcaacgt
    19501 ctgctttaat tttgaggacg gttttgtcgt tccggacaat aatccgaaca atcaagcggg
    19561 caagcatctg aaaacagatt tttcccgtgt tgttttaacc cataaaaatg aaaacgccga
    19621 agatgattat ttgttcgata tttttgaaga catcgttttt ttagggaaac gtttgtttac
    19681 ggtcagaaaa tttcttgatt tttctgaatt gcttgagatg gtcaatacac aaggttattt
    19741 tcttgagttt ctgtattt
//
LOCUS       DAWGNT010000024        18110 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.024, whole genome shotgun sequence.
ACCESSION   DAWGNT010000024 DAWGNT010000000
VERSION     DAWGNT010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 18110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18110
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.024"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(117..491)
                     /locus_tag="WHR98_000597"
     CDS             complement(117..491)
                     /locus_tag="WHR98_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307312.1"
                     /translation="MIIQNEFNLYPSNMLPERFCYPEKYVRISNDTSLIPYIQPHNFH
                     WWFENYGTEGAEVAYIFRNSILPDLNLIPFASNGEWEAYFDGNDVTGNPRVIVINLDN
                     IENHEFFNSFEDWLELAIKDTW"
     gene            complement(664..1020)
                     /locus_tag="WHR98_000598"
     CDS             complement(664..1020)
                     /locus_tag="WHR98_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mimic protein"
                     /protein_id="HEZ2307313.1"
                     /translation="MNEHNLLIFCLKDNVSISEYTEMIDWAYKNIQSETVVEITESQI
                     IEYQNRGLWRLFSEITDNWLFGPSEGDWLIDKESILAVKEKLQNSDFSTEPLVKNIIH
                     VLEYAIKNEKTVIFHF"
     gene            complement(1163..1506)
                     /locus_tag="WHR98_000599"
                     /pseudo
     CDS             complement(1163..1506)
                     /locus_tag="WHR98_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688154.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1665..2066)
                     /locus_tag="WHR98_000600"
     CDS             complement(1665..2066)
                     /locus_tag="WHR98_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307314.1"
                     /translation="MKLKSLDFPTGYFYFDNAAINSDKVEVIAVGYRNTDKTIKIFIE
                     DVIHFRVVDESYFIDTFMDLISEDADRALLHENGGQSFFELLDECYAEWILKESYFPL
                     NREFFKYYIFMFEQTFIEIIGSSATYSIIEG"
     gene            complement(2070..2810)
                     /locus_tag="WHR98_000601"
                     /pseudo
     CDS             complement(2070..2810)
                     /locus_tag="WHR98_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713004.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(2880..3197)
                     /locus_tag="WHR98_000602"
     CDS             complement(2880..3197)
                     /locus_tag="WHR98_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307315.1"
                     /translation="MKKNIFHNVSLYEIIFSDNGNTLTLSFTDTIEGNYFGYIKCSNI
                     LNFKLDTNNFVDYEDKEDSLFPLFIPEIELYKYQFYSEIIIDVGIIIKISAETINFEP
                     LGK"
     gene            complement(3194..3796)
                     /locus_tag="WHR98_000603"
                     /pseudo
     CDS             complement(3194..3796)
                     /locus_tag="WHR98_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253822.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(4222..4566)
                     /locus_tag="WHR98_000604"
     CDS             complement(4222..4566)
                     /locus_tag="WHR98_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307316.1"
                     /translation="MIIEHNGNIHKIARMTGNKNNFLEIILSDIHENIKIKPLTIKVK
                     GENVINILPEEVSFYVKQGVDLIYEKYKRKFFISEISFCQSDSRPSSIYAFLTFHLLE
                     DIIKNESPSNYT"
     gene            complement(4604..4927)
                     /locus_tag="WHR98_000605"
     CDS             complement(4604..4927)
                     /locus_tag="WHR98_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307317.1"
                     /translation="MFLDDVNIFLDDLNTNPITDEWYMSNFADKHIKILESYEAFDIL
                     KQFVDYMIEEYDEKSEYEIMEILRQLKYQADTNEKFYTNTQKQKIVELYKQEISQDIL
                     NEIFR"
     gene            complement(4930..5118)
                     /locus_tag="WHR98_000606"
     CDS             complement(4930..5118)
                     /locus_tag="WHR98_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mafB"
                     /protein_id="HEZ2307318.1"
                     /translation="MEEVKANPQGKTPARIPPMSDTKNGWLAKDGWVKRVQNVNKIEI
                     HYIENTRTGEKTDFKFKD"
     gene            complement(5188..5532)
                     /locus_tag="WHR98_000607"
                     /pseudo
     CDS             complement(5188..5532)
                     /locus_tag="WHR98_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503511.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(5616..5918)
                     /locus_tag="WHR98_000608"
     CDS             complement(5616..5918)
                     /locus_tag="WHR98_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307319.1"
                     /translation="MLNEIFEIYSRQGESLIGIGIREAALPVPIAIDILNLFINERIL
                     VLGGDIYIKKDNYFYQTYDNWYYEGSNLFNSIDKAMHYLSQIKLENAYVSFVLKFI"
     gene            complement(5941..6210)
                     /locus_tag="WHR98_000609"
     CDS             complement(5941..6210)
                     /locus_tag="WHR98_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307320.1"
                     /translation="MMTESHGYLSNNLPVKIINDIIYATQLVEDLVLGKIKIVDFLKS
                     YNNFYCWLGFDELPQSEKIKFLSYLNILSIHKEIQDETVNRVYTD"
     gene            complement(6231..6437)
                     /locus_tag="WHR98_000610"
     CDS             complement(6231..6437)
                     /locus_tag="WHR98_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307321.1"
                     /translation="MMENSKKTWEIDGEIWLHCPVCGTEVMDYDICDVCQWQNTGETN
                     IDGGPNEMTLAEAKEAYAKGLPIR"
     gene            complement(6403..7152)
                     /gene="mafB"
                     /locus_tag="WHR98_000611"
                     /pseudo
     CDS             complement(6403..7152)
                     /gene="mafB"
                     /locus_tag="WHR98_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257312.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
     gene            complement(7258..7629)
                     /locus_tag="WHR98_000612"
     CDS             complement(7258..7629)
                     /locus_tag="WHR98_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEZ2307322.1"
                     /translation="MIKQNSFVPYPEAMLPKGFKYPQSYLKLAQSTHAINYDEQYSFP
                     WWFENAESNISEVIDIYFEITGIPNLLPFARNQEWAACFDISDKSGNPKIIVVNLDNT
                     KYYETFENFDTWLKEAENDGW"
     gene            complement(7626..7877)
                     /locus_tag="WHR98_000613"
     CDS             complement(7626..7877)
                     /locus_tag="WHR98_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307323.1"
                     /translation="MDNTRIMAAREAGVKVEANVHNFNDRLSSKERIRFKHDGIEPQT
                     WGEAIQLRIRKQETQKGVPEGWSKRFPNGSIYDVKVLRK"
     gene            complement(8009..8215)
                     /locus_tag="WHR98_000614"
     CDS             complement(8009..8215)
                     /locus_tag="WHR98_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307324.1"
                     /translation="MNILSINNQNSTISLTQDEVFVLRAILNEIYAGVCVDSREFENV
                     SGVRKHEVDNLQQQFAGIYKKMTT"
     gene            complement(8225..9070)
                     /gene="mafB"
                     /locus_tag="WHR98_000615"
                     /pseudo
     CDS             complement(8225..9070)
                     /gene="mafB"
                     /locus_tag="WHR98_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246532.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
     gene            complement(9167..9379)
                     /locus_tag="WHR98_000616"
     CDS             complement(9167..9379)
                     /locus_tag="WHR98_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307325.1"
                     /translation="MKLINFEESSVKISLDKDELYIIQAIVGEIYSGVCVDCRDFEII
                     HGVEKIKFFLWIKNLKKYMILGINVS"
     gene            complement(9455..9814)
                     /locus_tag="WHR98_000617"
     CDS             complement(9455..9814)
                     /locus_tag="WHR98_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 8 family protein"
                     /protein_id="HEZ2307326.1"
                     /translation="MRLKLKNYDCSDFDLEDFPQDKLENFCILLTLSIGFDESNGADY
                     FYVYIYSTEWLLSNIHRPMSLKNSIVTNRFNIEHILKLINDILEICNSTSEDKSISNL
                     AKYFDWEFDDYNLNIQD"
     gene            complement(9819..10535)
                     /locus_tag="WHR98_000618"
                     /pseudo
     CDS             complement(9819..10535)
                     /locus_tag="WHR98_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504008.1"
                     /note="MafB polymorphic toxins, described in Neisseria,
                     are fratricidal toxins the provide a competitive
                     advantage. Each MafB is accompanied by an immunity protein
                     MafI.; incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MafB family polymorphic toxin"
     gene            complement(10752..11135)
                     /locus_tag="WHR98_000619"
     CDS             complement(10752..11135)
                     /locus_tag="WHR98_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307327.1"
                     /translation="MMTEPHGYPSNNLPVKIINDIIYATQLVEDLVLGKIKIVDFLKS
                     YNNFYYWLGFDELPQSEKIKFLNYLNILSIHKEIQDKTVNRVYTDCFDIDKLHSLGRI
                     TTNECINGIKKIYQKNKLEFDNILK"
     gene            complement(11101..12546)
                     /gene="mafB"
                     /locus_tag="WHR98_000620"
     CDS             complement(11101..12546)
                     /gene="mafB"
                     /locus_tag="WHR98_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 3"
                     /protein_id="HEZ2307328.1"
                     /translation="MKLPIQKFMMLFAAAISLLQIPISHANGLDARLRDDMQAKHYEP
                     GGKYHLFGNARGSVKNRVYAVQTFDATAVSPVLPITHERTGFEGIIGYETHFSGHGHE
                     VHSPFDHHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHPEDGYDGPQGSDYPPPGGARD
                     IYSYYVKGTSTKTKTNIVPQAPFSDRWLKENAGAASGFFSRADEAGKLIWESDPNKNW
                     WANRMDDIRGIVQGAVNPFLMGFQGLGVGAITDSAVNPVTYAAARKTLQGIHNLGNLS
                     PEAQLAAATALQDSAFAVKDSINSARQWADAHPNITATAQTALSVAEAAGTVWRGKKV
                     ELNPTKWDWVKNNGYKKPAVRLMQTVDGEMAGGNKPPKPSTQQHSTHSDNNIGLPAPY
                     VKPDTSISPTGTIYVDSKGNAIPTPIGGYITGSPDARFIQVRDSNGNLTGARIDDAHH
                     ANTHQDPRALTGHAHVPGVTNDDGTPWLPIK"
     gene            complement(12586..13548)
                     /gene="mafA"
                     /locus_tag="WHR98_000621"
     CDS             complement(12586..13548)
                     /gene="mafA"
                     /locus_tag="WHR98_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HEZ2307329.1"
                     /translation="MQARLLIPILFSVFILSACGTLTGIPSHGGGKRFAVEQELVAAS
                     ARAAVKDMDLQALHGRKVALYIATMGDQGSGSLTGGRYSIDALIRGEYINSPAVRTDY
                     TYPRYETTAETTSGGLTGLTTSLSTLNAPARSRTQSDGSGSRSSLGLNIGGMGDYRNE
                     TLTTNPRDTAFLSHLVQTVFFLRGIDVVSPANADTDVFINIDVFGTIRNRTEMHLYNA
                     ETLKAQTKLEYFAVDRTNKKLLIKPKTNAFEAAYKENYALWMGPYKVSKGIKPTEGLM
                     VDFSDIRPYGNHTGNSAPSVETDNSHEGYGYSDEVVRQHRQGQP"
     gene            complement(13732..14451)
                     /locus_tag="WHR98_000622"
     CDS             complement(13732..14451)
                     /locus_tag="WHR98_000622"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEZ2307330.1"
                     /translation="MTQQIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVK
                     MGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARV
                     QSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVML
                     KATNVDGVYTADPKKDSSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGI
                     AKEGSLKRVVTGENEGTLVHC"
     gene            complement(14671..15525)
                     /locus_tag="WHR98_000623"
     CDS             complement(14671..15525)
                     /locus_tag="WHR98_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003795802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEZ2307331.1"
                     /translation="MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIK
                     SGAKAGKLAGRTAAEGVLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAE
                     KKPATVEELSELVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVE
                     YKGSEDVARKIGMHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMV
                     EGRIRKFLAEITLNGQAFVMNPDQTVAQFAKENGTEVVSFVRYKVGDGIEKAVVDYAA
                     EVAAAAKV"
     gene            complement(15654..16382)
                     /gene="rpsB"
                     /locus_tag="WHR98_000624"
     CDS             complement(15654..16382)
                     /gene="rpsB"
                     /locus_tag="WHR98_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEZ2307332.1"
                     /translation="MSQITMRQMIEAGVHFGHQTRFWNPKMAQYIFGARNKIHIVNLE
                     KTLPMFQDAQEAVRRLVANKGTVLFVGTKRQARDIIREEATRAGMPFVDYRWLGGMLT
                     NYKTVKQSIKRLEEKTAALENAAESGFSKKEILEMQRDVEKLERSLGGIKNMKGLPDA
                     IFVIDTGYQKGTLVEAEKLGIPVIAVVDTNNSPDGVKYVIPGNDDSAKAIRLYCRGIA
                     DAVLEGKNQALQETVAAAQEAAAE"
     gene            complement(16555..16788)
                     /locus_tag="WHR98_000625"
     CDS             complement(16555..16788)
                     /locus_tag="WHR98_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307333.1"
                     /translation="MWHIVAIGYLFVAVMYSAAQPSIARALIYLVFWAVLPTVFTVFT
                     ITVRRRNHLMRQQEQAESEQQRAQRQKDSGTKP"
     gene            16866..17447
                     /locus_tag="WHR98_000626"
     CDS             16866..17447
                     /locus_tag="WHR98_000626"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEZ2307334.1"
                     /translation="MRNEEKRALRRELRGRRSQMGRDVRAAATVKINHLLKRYIKKGR
                     KIGVYWPMGKELRLDGFVRAAQKRGAELYLPYIEPRSRRMWFTPYPESGMERERIRGR
                     ARLNVPQFAGRKIRVHGLSVLLVPLVGIDREGYRLGQAGGYYDATLAAMKYRLQAKTV
                     GVGFACQLVDRLSVEAHDLPLDGFVSEAGILCF"
     gene            17508..18098
                     /locus_tag="WHR98_000627"
     CDS             17508..18098
                     /locus_tag="WHR98_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEZ2307335.1"
                     /translation="MSEKIILPVLSLGGVRLEPLDVHHETGLREAVCDGEVWKLGVTS
                     APHPDRVADYIGTALATRLAFAVVDEEAGRVVGTTAYYHFEPQIPRLDIGFTWYAASA
                     RRTRINTCCKIMLLDYAFDVLACRCVGWRTDILNLASQRAIERLGAEKDGVLRMHMLR
                     KDGSVRDTVVYSMLREDWCKNREILTGRLAGYGVQV"
BASE COUNT         4750 a         3754 c         3627 g         5979 t
ORIGIN      
        1 gcgaatggcg ttttaacaac agtgagataa aagttcttgt tccattttaa aacaattagt
       61 aaaatcgagt ttatcctagt tgtccagggc agcctcatct ctttatagat agctgcttac
      121 caagtatcct taattgctaa ttcaagccaa tcttcaaaac tattaaaaaa ttcatggttt
      181 tctatattat ctaaattaat gacaataacc ctaggatttc ctgttacatc attaccatca
      241 aaataagctt cccattctcc attactagcg aatgggataa gatttaaatc aggcaggata
      301 gaatttctaa atatataagc tacttctgcc ccttctgttc cataattctc aaaccaccag
      361 tgaaaattat gtggttgaat ataaggtatt aaagatgtat cgttagagat acgaacatac
      421 ttttcaggat aacaaaacct ttcaggaagc atattactag gatataaatt aaattcattt
      481 tgaataatca tttcgttacc ttaggatcat aaatactacc attaggaaac tgggtagacc
      541 aatttggtgg tgctagttca ttttcaattt gttttttaat tctaaattga atagcttctc
      601 cccatgtttg cggcatctaa tgctgcttgc tctgcatcaa tattactaaa aattggatta
      661 gtctcaaaaa tgaaaaatta ctgttttttc attttttata gcatattcaa gtacatgaat
      721 aatatttttc actaagggct ctgtagaaaa atctgaattt tgtaattttt cttttacagc
      781 caaaatactt tccttatcta ttagccaatc cccctcactt ggtccaaata accaattatc
      841 ggtaatttca gaaaaaagtc tccataatcc acgattttga tattcaataa tttgactttc
      901 cgtaatttct acaactgttt cagattgaat gtttttataa gcccaatcaa tcatttcagt
      961 atattcacta attgaaacat tgtcttttaa acagaaaatt aacaggttgt gttcattcat
     1021 ttgtctaagt tcttaatatg agtttgttgt tgtaaataat cttttgcttg cttaccttgt
     1081 aaattaaagg attaaccgca ccttggatga tgccgcgaat atcatccata cggttacccc
     1141 accaattttt attggtgtat cgttaatcat ttatttcaaa aaagttattt attatcatat
     1201 tatcagggag caggtcgtta aaaaaaaccc cctcaaattc cattaaatta gtatttatcc
     1261 agcacataaa cgaaccaaag cgttctttcc ctgagtgtaa atatttaaaa ttaaactcaa
     1321 aataagtttt tttgcttaga aaatttaatg gtttttctat agtgaaaaaa agcccttact
     1381 cgttttcgtt cgagatacta ttttaaataa atttttattt tcaataaaat aagaatattc
     1441 atttactaag ttgttatgat aaaaaagtaa ttttattaaa atgttttcat aattttctag
     1501 gttcatttct agctcaattt aaaatgattt cattgttgcc gtaccaatgc gaaatttacc
     1561 atcaacaaaa tttcccttca ctgatacagg tacaccatca acttgggtag ttttattttc
     1621 aggctgcctg aaagaaagat aggcaactta ttactcatct tatgctagcc ctcaataatt
     1681 gaatacgttg cactagaacc aattatttct atgaatgttt gctcaaacat aaaaatatag
     1741 tatttaaaga attctctatt caaaggaaaa taactttctt tcaatatcca ttccgcataa
     1801 cactcatcaa gaagttcaaa aaaagattga ccaccatttt catgaagcaa agctctatct
     1861 gcatcttccg aaattaaatc cataaaagta tctataaaat acgattcatc aacaacccta
     1921 aaatgaataa catcttcaat aaaaattttt atggttttat ccgtatttct ataaccaact
     1981 gctataactt ctactttatc agagtttatt gctgcattat caaaatagaa atagccagtt
     2041 gggaaatcta agctttttaa tttcataatt tatcgtgtat ttccatatct gatttttatt
     2101 tttcggttat tactaattgt tatttcaagt gttggttctc caccactact atcattacga
     2161 gcattaaccg cacgcctatc aggtaaattg cccgttatcg ttccattagg acgtgtttgt
     2221 acatttcgaa cattcagact attaaaatca tttagtgcgt cattgtaatc ccccacttta
     2281 tcatactgaa cagcgggacc ttttgtttta ctcctttgag tagtattgct caaaatgtct
     2341 ttgatttgta aatcactgcg caccttaccg gtttctatgc gagctgccac actactcggg
     2401 ctataggggt cgctatcaat cgcaggatta ccaccgctgg ttttttgtcc gctagcctgt
     2461 ttcccaacct gctgtactgt atcgccaatt tcatctaccg tacctaacgc cttagtctgc
     2521 atatggcgaa cagcaggttt tttatagccg gtatttttaa cccaatccca tttagtcggg
     2581 ttaagttcta cttttttacc tctccaaacc gtacctgcgg cctctgctac ggaaagggca
     2641 gtttgggctg ttgcagttat attcggatgg gcatcagccc attgtctggc agagttgata
     2701 ctgtctttta ccgcaaaagc actgtcttgt aatgcggttg cggccgcaag ttgtgcttcg
     2761 ggacttaaat ttcctaaatt attaatacct tgtagagtct gctgcgcaga gatgtagcaa
     2821 ctgtattttt accccgtcgg gtaaaaatac agttgctacg gctgctggga aagcagttac
     2881 tattttccca gtggctcaaa attaattgtt tcagcagata tttttataat aatccctaca
     2941 tcaataataa tttcactata aaattggtat ttatatagct ctatttcggg tataaacaag
     3001 ggaaacaagc tatcttcctt atcctcataa tctacgaaat tatttgtatc taatttaaaa
     3061 ttcaaaatat tactgcattt gatatatccg aaataattac cttcaattgt atctgtaaaa
     3121 gataatgtaa gggtatttcc attatcggaa aagattattt cataaaggct tacattgtga
     3181 aaaatatttt ttttcatttg acaaaatatc cagaatgatg ccgattattt ggcaatggat
     3241 tgccttcata atcttgtcgt tgcggatatt ttccctgtac accatcggtt cgcggcactc
     3301 tttgggttct tataacctct ccatttggac gaatatctat tttcacgcca tcaggacctt
     3361 tccatgtttc atattgagcc tcatctgaac cagtacgtct aaaaccttgt tcttgcaatg
     3421 cttgacgtaa ttcatctcgc gtagttggtc tgatagattt aacaactggc ttgtttcctc
     3481 ctgccatctc accgtccaac gtctgcatag gtcgggcagc aggtttttta tagccggtat
     3541 ttttaaccca atcccatttg gtcgggttaa ggtttacttt tttaccgccc caaaccgtac
     3601 ctgcggcctc tgctatggca agagcagttt gggctgttgc agttatattc ggatgggcat
     3661 cagcccattg tctggcggaa ttgatgccgt cttttaccgc aaaagcactg tcctgtaata
     3721 ggctcgcggc agcaagttgt gcttccggac ttaattttcc taaatcatta ataccttgta
     3781 aagtttgctg cgcagagatg taggtcggat atttgtatcc gacaaaaata tttgacgcat
     3841 ctatcgtttc cgaaatgccg ctgttggaaa atgtcggatt cgagaatccg acctacggct
     3901 atttcgttta agtcataaat agccattcat gttccttctg aatttgcttt tgctatcctt
     3961 agaaccaatc atataaacat tatcatcatt aattaatgtt ctaagtttat gaagcggtca
     4021 aatctgtcaa actaccagag atgaagcata tcctcctgga agtaattctg ttcgtgctgt
     4081 ttccatatct tctttgccat catcagttac ttctctgtct aaataaaatc ttacgataag
     4141 tttttgtcta atttcatcaa attctgccgt aattaatctt atattgatat gaatacacgg
     4201 ttcatacctg ctattagcca gtcaggtgta gttggatggg gattcatttt taataatatc
     4261 ttcaagcaag tgaaatgtaa gaaaagcgta gatacttgaa ggccggctat ctgattggca
     4321 aaaagaaatt tcggagataa agaatttccg tttatatttt tcataaatta aatcaacacc
     4381 ttgttttaca taaaaactaa cttcctcagg aaggatattt ataacattct ctccttttac
     4441 ttttatagtt aatggtttga tttttatgtt ttcatgaata tctgatagga ttatttctaa
     4501 aaaattattt ttatttccag tcattctggc tattttatgt atatttccat tgtgttcgat
     4561 tatcatttta ttttttccaa ggatttcctt ctatattgat agtttatcta aagatttcat
     4621 ttaaaatatc ctgactaatt tcttgtttat ataattctac aattttctgt ttctgtgtat
     4681 ttgtataaaa tttttcgttg gtatctgctt gatattttaa ttgtctcaat atttccatga
     4741 tttcatattc tgatttttca tcatattctt caatcatgta atcaacaaat tgttttagaa
     4801 tatcaaaggc ttcgtaactt tccaaaattt taatatgttt atcggcaaaa ttggacatat
     4861 accattcgtc agtgattgga ttagtattta aatcatctaa aaaaatattt acatcatcta
     4921 aaaacatgac taatccttaa acttaaaatc tgttttctca ccggttcttg tgttttcaat
     4981 gtaatgtatt tcaattttgt ttacgttttg aacacgctta acccaaccgt cttttgctaa
     5041 ccaaccattt ttagtatcgg acataggagg tattctcgca ggagttttgc cctgtgggtt
     5101 tgccttaact tcttccattg ctaattgttc ctttaaatta ttaggtattg tacgaccggt
     5161 tgatttttca acagattgtg tccctatttt taatgatttg tttcccccag ccatttcccc
     5221 gtctacagtc tgtatagggc gggcagcagg ttttttatag ctggtatttt taacccaatc
     5281 ccatttagtc gggttaagtt ctactttttt accgcgccaa accgtacctg cggcctctgc
     5341 tacggaaagg gcagtttggg ctgttgcagt tatattcgga tgggcatcag cccattgtct
     5401 ggcggaatta atgccgtttt ttaccgcaaa agcactgtcc tgtaataggc tcgcggcagc
     5461 aagttgtgct tccggactta aatttcctaa atcattaata ccttgtagag tctgctgagc
     5521 ggctgtatct gagccggtca gtgtaggttg gattaaaacc cagcattttc aacatcttga
     5581 tgttttacta taaatctatt cttgtgcttc ctttgttaga taaatttcaa cacaaaagat
     5641 acgtatgcat tctctaattt tatttgagat aaataatgca ttgctttgtc gatactgtta
     5701 aataaattac ttccctcgta ataccaatta tcatatgttt gataaaaata attatctttc
     5761 ttgatataaa tatctccccc caatacaagt attctctcat tgataaataa atttaatata
     5821 tctattgcaa tagggacggg taatgcggct tctctaattc caattcctat caaagattcc
     5881 ccttgtctcg aataaatttc aaaaatttca tttaacatgt taatctctat ctactatttt
     5941 tcaatcggta taaaccctat tcacagtttc atcttgtatt tctttatgaa tacttaatat
     6001 attaagatag cttaggaatt ttattttctc agattgaggc aactcatcaa aaccaagcca
     6061 acaataaaaa ttgttatatg attttaaaaa atcaacaatt tttatttttc ctaaaaccaa
     6121 atcttcgact aactgggttg cataaataat atcatttatg attttaacag gtaaattatt
     6181 tgataggtaa ccatgggatt ccgtcatcat tgatttctct aggtgcttat ttatctgatt
     6241 ggtaagcctt ttgcgtaagc ttctttcgcc tccgcaagtg tcatttcatt agggccacca
     6301 tctatattag tttctcctgt attttgccac tgacaaacgt cacagatatc atagtccata
     6361 acttcagttc cgcaaacagg acaatgtagc catatttctc cgtcaatttc ccatgtcttt
     6421 tttgaattct ccatcataat acttctttcc taagtttggt ttaaacattg ttttgatttt
     6481 gaatgttttt ggattggcca aaacatagat attgttattg atatcatagc gcactcgtct
     6541 atgttccgtc tgataaccta atatcttgtc cgatgtctgt tttgataaca aatcagacgc
     6601 cattttttgg tagtcttcaa tggttatatc gccaaattct tttccatgag ctttgaaatg
     6661 tccatttaaa gatttctcag taggaaactt ggactttgtc catctgatgc ggtcttgaat
     6721 tgttcctgtc ggagaaatag atgtatcagg tttaacatat gaggcaggta agccgatatt
     6781 gttatcagag tgtgtagggt gttgctgcgt acttggtttt ggtggcttat tcccacctgc
     6841 catctcccca tctaaagtct gcatagggcg ggcagcaggt gttttatagc cggtattttt
     6901 aacccaatcc catttggtcg ggttaaggtt tactttttta ccgccccaaa ccgtagttgc
     6961 ggcttctgct acggaaaggg cagtttgggc tgttgcagtt atattcggat gggcatcagc
     7021 ccattgtctg gcggaattaa tgccgtcttt taccgcaaaa gcactgtcct gtaataggct
     7081 cgcggcagca agttgtgctt ccggacttaa atttcctaat tcattaatat cttgtaaagt
     7141 ttgctgcgca gagatgtagg tcggatattt gtatccgaca aaaatatttg acgcatctat
     7201 cgtttccgaa atgccgctgt tggaaaatgt cggattcgag aatccgacct acggctgcta
     7261 ccaaccatca ttttcagctt cttttagcca agtatcaaaa ttttcaaaag tctcgtaata
     7321 ttttgtatta tctaaattaa ctactataat tttaggatta cctgatttat ctgaaatatc
     7381 aaaacaggca gcccactctt ggtttctagc aaaaggtaat aggtttggaa tgccagttat
     7441 ttcaaaataa atgtcaatta cttctgatat attgctttct gcattttcaa accaccaagg
     7501 aaaagaatat tgttcatcgt agttaatggc atgagtggat tgagctaatt ttaaataact
     7561 ttgcggatat ttaaatcctt taggaagcat tgcttcagga tacggaacaa aactattttg
     7621 ttttatcatt tcctaagtac ctttacatca taaatacttc cgttaggaaa tcttttgctc
     7681 cacccttctg gaactccttt ttgtgtttct tgctttctaa ttcgtagctg gatagcttct
     7741 ccccaagttt gaggctcaat accatcatgc ttaaacctga ttctctcttt tgatgataat
     7801 cggtcattaa aattatgaac attcgcttcc acttttactc ctgcttcacg tgctgccata
     7861 atacgcgtgt tatccatact agtaggtgct ccatcaggca tattaacaac atcaaccctg
     7921 tcgccaaccc atgatttttt tctttcattt cggctacaat agaatcatag ttgtaatttg
     7981 cactaggctc tgacaaaaat ttgggttgtt aagttgtcat ttttttataa attccagcaa
     8041 actgttgttg taaattatct acttcatgtt ttctaacacc agatacattt tcaaattctc
     8101 ttgaatctac acatacgccc gcatatatct cattcaagat agctcgtaaa acaaaaactt
     8161 catcttgagt tagtgaaata gttgagtttt gattatttat ggatagtata ttcatggctt
     8221 tttcctataa atcatcataa tattttttac ctgatgttgg tctaaatgct gtacctccat
     8281 cgtcagaatt tttatctcgg ataactattg tccctgtttt atcatcccaa tacgcagttc
     8341 taccgcgagg taactctttc atatttgttg gatggctaac aatattttca atatgccgag
     8401 caaaatctgc tggtgaattg atatttaaat ccgtaaattc ttgttgtctt atgacatgct
     8461 tgttataagc atgcccacta ctaatttgtt ctccaattag ttgcgcttgt aaagacggtt
     8521 gtgtggaagc atctgctttg ctgttggacg ttatagattt aggcggtcta ttcccaccgg
     8581 ccatttcccc atccaaagta tgcatggtgc gaacagcagg tgttttatag ccggtatttt
     8641 taacccaatc ccatttggtc gggttaagtt ctactttttt accgccccaa accgtagttg
     8701 cggcctctgc tacggcaagg gcagtttggg ctgttgctgt tatattcgga tgggcatcag
     8761 cccattgtct ggcggaatta atgccgtctt ttaccgcaaa ggcactgtcc tgtaataggc
     8821 tcgcggcagc aagttgtgct tccggactta attttcctaa atcattaata ccttgtagag
     8881 tctgctgagc ggctgtatct gtgacagggc ttaccgcact gtctgtaatt gccccaatcc
     8941 ctactccttg aaaacccatt aaaaaaggat taaccgcacc ttggacgatg ccgcgaatat
     9001 catccatacg gttagcccac caatttttat tggggtcgtt ttcccatatc agttttcctg
     9061 cttcatcagc acagttagga ttggcattga tgcccaccca gtttcaggca gcctgaaaag
     9121 gatttttaat atacggcaaa aggtgggcaa caagtgccca ccttacctag ctaacattta
     9181 tcccaagtat catatatttt tttaagttct ttatccaaag aaagaacttt attttttcaa
     9241 caccatgaat tatctcaaaa tctctacaat ccacgcatac gcctgaataa atttctccta
     9301 caattgcttg aataatatac aactcatctt tatcgagact aattttaact gaactctctt
     9361 caaaattaat taatttcatg aataattcct tttattttaa ttcgtcatca aaataccgtt
     9421 tgcctgtttt tggtctaaat gctgtccacc atctttagtc ttggatattt agattataat
     9481 cgtcaaattc ccagtcaaaa tattttgcca aatttgatat agacttatct tcagacgttg
     9541 aattacatat ttccaatata tcatttatca attttaatat gtgttcaata ttaaaacggt
     9601 ttgtaacaat tgagtttttt aatgacatcg gtctatgtat atttgaaagt aaccattcag
     9661 tgctatatat ataaacataa aaataatcag caccattact ttcatcaaaa cctattgata
     9721 atgtcaaaag tatacaaaaa ttttctaact tgtcttgtgg gaaatcttcc aaatcaaagt
     9781 cagaacaatc ataatttttt aattttaatc tcatataatt acctaatatt taaatgtcca
     9841 tttttaattt tattcctttt tccatttgaa tcaatagtat aagtttcaaa atttgcttga
     9901 atacctgtag ttgcaaattg tgaatttttt tctgttggtg gccgatattg tcgagtgcca
     9961 tctatactta accatccgcc tccactagtt tgtcttgcac cctcaccaac ccaaatttta
    10021 cctagcctat ctgcctcttc ataagttgca gttcctattg gaaaattttt ttcactctta
    10081 tgaagagcta gactcaatct tggatcttga gccgcaatgt tttttaagtt ttgcccagtt
    10141 aattgattaa ctaattgagg ataagttgca gcattggctt ttcctccaga cgttatagat
    10201 ttaggcggtt tattcccacc ggccatttcc ccatctaaag tctgcatagg tcgggcagca
    10261 ggtgttttat aatcggtatt tttaacccaa tcccatttag tcgggttaag ttctactttt
    10321 ttaccgcccc aaaccgtacc tgcggcctct gctatggcaa gggcagtttg ggctgttgca
    10381 gttatattcg gatgggcatc agcccattgt ctggcagagt tgatactgtc ttttaccgca
    10441 aaagcactgt cctgtaatag gctcacggcg gcaagttgtg cttccggact taaatttcct
    10501 aaatcattaa taccttgtag agtctgctgc gcagagatgt aggtcggata tttgtatccg
    10561 acaaaaatat ttgacgcatc tatcgtttcc gaaatgccgc tgttggaaaa tgtcggattc
    10621 gagaatctga cctacggctg ctgactattt tcttgtttat ataattctac aactgcaaac
    10681 tactatcaaa tctttttatc tctggctcta cactcagcaa gaatattttt attttacaaa
    10741 acataggcta gttatttgag tatattgtca aattctaatt tgtttttttg atagattttt
    10801 tttataccat taatacattc attagttgta attctaccaa gcgaatgtaa tttatcaata
    10861 tcaaaacaat cggtataaac cctattcaca gttttatctt gtatttcctt atgaatactt
    10921 aatatattga gatagtttag aaattttatt ttctcagatt gaggtaactc atcaaaacca
    10981 agccaataat aaaaattgtt atatgatttt aaaaaatcaa caatttttat ttttcctaaa
    11041 accaaatctt caactaactg ggttgcataa ataatatcat ttatgatttt aacaggtaaa
    11101 ttatttgatg ggtaaccatg gggttccgtc atcatttgta actcctggta catgtgcgtg
    11161 tcctgtaagt gcgcgtgggt cttgatgggt atttgcatga tgagcatcat ctattctggc
    11221 tccagtcaag tttccattac tatctcggac ttggataaaa cgagcatcag gcgaacctgt
    11281 tatataaccg cctattggtg ttggtattgc atttcctttg ctgtctacat aaattgttcc
    11341 tgtcggagaa atagatgtat caggtttaac atatggggca ggtaagccta tattgttatc
    11401 agagtgtgta gagtgttgct gcgtacttgg tttcggtggc ttatttcccc cagccatctc
    11461 cccgtctaca gtctgcataa ggcgaacagc aggtttttta tagccgttat ttttaaccca
    11521 atcccatttg gtcgggttaa gttctacttt tttacctctc caaaccgtac ctgcagcctc
    11581 tgctacggaa agggcagttt gggcagtagc tgtaatgttc ggatgggcat cagcccattg
    11641 tctggcagag ttgatactgt cttttaccgc aaaagcactg tcttgtaatg cggttgcggc
    11701 cgcaagttgt gcttccggac ttaaatttcc taaattgtga ataccctgta aagttttccg
    11761 tgctgccgca taggttaccg ggtttaccgc actgtctgta attgccccaa ctcccaatcc
    11821 ctgaaaaccc attaaaaaag gattaaccgc accttggacg atgccgcgaa tatcatccat
    11881 acggttagcc caccaatttt tattggggtc gctttcccat atcagttttc ctgcttcatc
    11941 cgcacggctg aaaaaaccag aggcggcacc ggcattttct tttagccaac ggtctgaaaa
    12001 tggggcttga gggacaatat tagtctttgt ttttgttgaa gttcctttga cataatagct
    12061 gtatatatcc cttgctcctc cggggggcgg ataatcgctg ccttgcggcc cgtcatatcc
    12121 atcctccgga tgaatttccg accctgtccg atgaagttgg taaacagtaa aaccaccgtc
    12181 tacaccgccg ctgaaatcag aagtgctttt tgaatcatga tgatcgaacg gactgtgtac
    12241 ttcatgtcca tgtcctgaaa aatgggtttc ataaccgata atgccttcaa accctgtccg
    12301 ttcgtgtgta ataggcagta caggactgac cgcagttgca tcaaatgtct ggacggcgta
    12361 aacccgattt ttaacactgc cgcgagcatt accaaacaga tggtatttac cacccggttc
    12421 gtagtgtttt gcctgcatat catcgcgtaa acgggcatcc aaaccgttcg catgactaat
    12481 ggggatttgc agcaacgata ttgccgctgc aaacagcatc atgaattttt gaataggcaa
    12541 tttcattttg ttttccttgg tagcaagcgg ttatggtcgt gtgaatcaag gttgcccttg
    12601 tctatgttgt cgcactactt catcgctgta tccatacccc tcatgactgt tatcagtctc
    12661 tacggatggg gcggagttac ccgtatgatt gccgtatggt cggatatcgg agaaatcgac
    12721 cattaatcct tccgtcggtt taattccttt gcttacttta tacggcccca tccacaatgc
    12781 gtaattttct ttataggcag cttcaaacgc attggttttg ggtttgatga gcaatttttt
    12841 attggttctg tctactgcga aatattccag ttttgtttgg gctttcagtg tttcggcatt
    12901 gtataggtgc atttcggttc tgttgcgtat cgttccgaat acgtcgatgt taataaacac
    12961 atctgtatcg gcattggcag gagaaacaac gtctatgccg cgcaggaaaa atacggtctg
    13021 taccaagtgg gaaagaaagg cagtgtcgcg cgggttagtc gtcaaggttt catttcgata
    13081 atcccccatc ccgccaatat ttaagcccag actgctccta cttccgctac cgtctgattg
    13141 ggtgcgcgag cgtgcagggg cattaagtgt agataaagaa gtggttaaac ctgtcaaacc
    13201 gcctgatgtt gtttcagcgg tggtttcgta acgtggatag gtgtaatcgg tacggacggc
    13261 agggctgttt atgtattcgc cacgaatcag tgcatcaatg gagtagcgac cccctgtcaa
    13321 actgcctgaa ccttggtcgc ccatagttgc aatgtacaat gcaacttttc gtccgtgtaa
    13381 tgcctgtaaa tccatgtctt taacggcagc tctggcagaa gcggccacaa gttcttgttc
    13441 gaccgcaaag cgtttacctc cgccatgcga tggaatacct gtcagtgtcc cgcaggcgga
    13501 taaaataaaa actgaaaaaa gaataggtat cagcagccgt gcttgcatag attttctcct
    13561 ttgatgaaaa acaaattgta tcaaaattgt aaatatagtg gattaaattt aaaccagtac
    13621 ggcaaggcga ggcaacgccg tactggttta aatttaatcc actataatct ccatataata
    13681 aatggctgtc tgaagcccat atgcgactat atctgccgac actatggtca atcagcagtg
    13741 aaccagcgta ccttcgtttt caccggttac tacacgtttg agcgagcctt ctttagcaat
    13801 gccgaatact acaatattga gcttgcgttc gcggcagagg gcgaaagcgg tggcatccat
    13861 cactttgagg tttttcaaca aggcttcgtc aaaagtaatg gtttcgtagc gcgtggcgga
    13921 tgagtctttt ttggggtctg cggtgtacac gccgtcaacg ttggtggctt tgagcatcac
    13981 gtcgcagttc atttccgcac cgcgcaatgc ggcggcagtg tcggtcgtga agaacgggtt
    14041 accggtaccg gcggcaaaaa tcacgacttt gccttcttcc aaatattgga tggctttagg
    14101 acgggcgtaa gtttcagcga tttgctgcat agacagtgcg gattgtacgc gcgctttgat
    14161 gcctaaagtt tcaaatgcgt ctttgagtgc caacgcgttc atcacggtcg ccatcatgcc
    14221 catgtagtcg gcggtggcgc gatccatgct gcctgcttgg gcggatacgc cccggaaaat
    14281 attgccgccg ccgacaacaa taccgacttg cacgcccatt ttaacgactt cggcaatttc
    14341 gccgacagtt tgaacgatgg tatcgtgatt gatgccgaac ggatcggaac ccatcaggga
    14401 ttcgccggag agtttcagta atacgcgttt gtatttgatt tgctgtgtca tgggatacct
    14461 tgctttcttg aatgtcgtcg gtcggagttt gggccgtctg aattttcaaa cggtcggaat
    14521 attaatgata gggtgtgtcg gtttattatt gttttgtttt aagacggtct gaatattcgg
    14581 tcgtcttaaa ataggtaccg caaacggttt tctcaaaaaa aagcaccctg attcgtttgg
    14641 aatccaggtg ctttcttttt cataagtgcc ttacactttg gcggctgcgg ctacttcggc
    14701 tgcgtagtcg acaacggctt tctcgatacc gtcgcctact ttgtagcgga cgaagctgac
    14761 cacttcagtg ccgttttctt tggcgaattg ggcaacagtt tgatcggggt tcatcacgaa
    14821 tgcttggccg ttcagagtga tttcagccaa gaatttgcgg atacggcctt caaccatttt
    14881 agcggcgatg tcggcaggtt tgccggaagc gatggcttgt tcggtgtaga tgtggcgttc
    14941 tttttcaacg gtttcggcat ctacttcggc ttcgcttacg cattgtggtt tagcggcaac
    15001 aatgtgcata ccgattttgc gtgctacgtc ttcagagcct ttgtactcaa ccaatacgcc
    15061 ttcggtcgcc aatgcgccgt ggatgtaggc aaccagttgg ttggcagtgt cgatcacttg
    15121 gaagcgacgg acagacatgt tctcgcccaa tttagcgatg atggctttgc gttctgcttc
    15181 aaccagttcg ctcagttctt caacggtagc cggttttttc tcggcagcag ttttagcaac
    15241 gaagttggca aattctacga agccggcgtc tttcgcgacg aagtcggttt cgcagtttac
    15301 ttcgaccaat gcgccgacat tgccgttgat cgcgtaagcc aatacgcctt cggcagcggt
    15361 acggccggcc agtttaccgg ctttcgcacc ggatttgata cgcaggattt cttcggcttt
    15421 gtcgaagttg ccttcggctt caaccaaggc ttttttgcat tccatcatgc ccaggccggt
    15481 agcggcgcgc agatcggcaa ccatttttgc agtaatttct gccattttga atctcctaga
    15541 tttttgggaa atacggaaag gattttccgc attcgggaat cgtgtgccgc gaacggacgt
    15601 tcagacggca tatttgagaa aaggggcata acgcccctct tcggtttgcc ggattactcg
    15661 gcagcggctt cttgggcagc ggctacggtt tcttgcagcg cttggttttt gccttccaaa
    15721 actgcgtcag cgatgccgcg gcagtacagg cggatggctt tggcggagtc gtcgttgccg
    15781 gggataacgt atttcacgcc gtcggggctg ttgttggtat cgactacggc gataacaggg
    15841 atgcccaatt tttcagcttc aaccagagta cctttttggt agccggtatc gataacgaaa
    15901 atcgcgtcag gtaggccttt catgtttttg ataccgccca aagaacgttc cagtttttca
    15961 acatcgcgtt gcatttccag aatttctttt ttgctgaaac cgctttcggc agcattttcc
    16021 aaggctgcgg ttttttcttc caggcgtttg atggattgct taacggtttt gtagttggtc
    16081 agcataccgc ccaaccagcg gtaatcaacg aaaggcatac cggcacgggt cgcttcttcg
    16141 cggatgatgt cgcgggcttg gcgtttggta cctacgaaca atactgtacc tttgttggca
    16201 accaaacggc gtacggcttc ttgcgcgtct tggaacatcg gcagggtttt ttccaagttt
    16261 acgatatgga ttttgttgcg cgcaccgaaa atgtattgtg ccattttcgg gttccagaaa
    16321 cgggtttggt ggccgaagtg aacaccggct tcaatcatct gacgcatagt aatttgagac
    16381 attttatttc cttgaaaggg ttaagagcac acattcaatc gcatagaact tgataggtca
    16441 cgcctattgt caagcaccct tcggcgaaag tgggcataag ttttaaaaaa tagtgtgttt
    16501 ccgaaatgga aaactgacgg attatagcgg ataagatgcc gtctgaaaag ggattcaggg
    16561 ttttgtgccg ctgtcttttt gccgttgtgc gcgctgctgt tcggattccg cctgttcctg
    16621 ctgcctcatc aggtggttgc ggcggcggac ggtaatggtg aaaaccgtga acacggtggg
    16681 cagcaccgcc caaaaaacca aataaatcaa ggcgcgcgca atactcggct gcgcggcgga
    16741 atacataacg gcaacaaaaa gatagccgat ggcgacgatg tgccacattg tgtgcgtcct
    16801 gtttgaatgt taacaaaatc gttataatcg caacattcta ccgcaatcct gaaaggccgt
    16861 ctgaaatgag gaatgaggaa aaacgcgccc tgcgccgcga attgcgcggg cggcgttcgc
    16921 aaatggggcg ggacgtgcgg gcggcggcaa cggtaaaaat caaccacctg ctcaaacgtt
    16981 atattaaaaa agggcggaaa atcggcgtgt attggccgat gggcaaggaa ttgcgtttgg
    17041 acggctttgt ccgcgcggcg caaaaacgcg gtgcggaact ctacctgcct tatatcgaac
    17101 cgcgttcgcg gcggatgtgg tttacgccgt atcctgaaag cggaatggaa cgggagcgca
    17161 tacggggcag ggcgaggttg aacgtgccgc agtttgcagg gcgcaaaatc cgcgtgcacg
    17221 gtttgtcggt attgctcgtt ccgcttgtcg gcatagaccg cgaaggctac cgtttggggc
    17281 aggcaggcgg ctattacgat gcgacgcttg cagcgatgaa ataccgtttg caggcaaaaa
    17341 ccgtgggcgt gggctttgcc tgccagttgg tggacagact gtcggtcgag gcgcacgacc
    17401 tgccgctgga cggttttgtg tcggaggcgg ggatattgtg tttttagccg ttcagacggc
    17461 attttgaacg gaaatgccgt ctgaaggtgg aatattggga gaaaaggatg tcggaaaaga
    17521 taatactgcc ggtcttgtcg ttgggtggcg tacggctcga accgttggat gtgcatcatg
    17581 aaacgggttt gcgcgaggcg gtttgcgatg gggaagtttg gaagctggga gtaacgtccg
    17641 cgccccatcc ggatagggtg gcagactata tcgggacagc attggcaacg cgtttggcgt
    17701 ttgcggttgt cgatgaagag gcgggcaggg tggtcgggac aacggcgtat tatcattttg
    17761 aaccgcagat tccgcgtttg gatattggat tcacatggta tgcggcatcg gcacggcgga
    17821 cacggataaa cacctgttgc aaaatcatgc tgttggatta cgcatttgat gttttggctt
    17881 gccgttgcgt gggatggcgc acggatattc tgaaccttgc ctcgcaacgt gccatcgaac
    17941 ggctgggtgc ggaaaaagac ggcgtgctgc gtatgcatat gctccgtaaa gacggcagtg
    18001 tgcgcgatac ggtcgtgtac agtatgctga gggaagattg gtgcaaaaac agggaaatcc
    18061 tgaccggcag gttggcaggg tatggcgtgc aggtgtgagg cagtattttc
//
LOCUS       DAWGNT010000025        17334 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.025, whole genome shotgun sequence.
ACCESSION   DAWGNT010000025 DAWGNT010000000
VERSION     DAWGNT010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 17334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17334
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.025"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(1139..1474)
                     /locus_tag="WHR98_000628"
     CDS             complement(1139..1474)
                     /locus_tag="WHR98_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEZ2307336.1"
                     /translation="MFGKAGLGGLMKQAQQMQENMKKAQAKLAETEIEGEAGNGLVKI
                     TMTCAHEVRKIDISPDLIQEAADDKEMLEDLILAALKSARGKAEETANKTMGAFTQGL
                     PPGVGDFFR"
     gene            complement(1554..3668)
                     /gene="dnaX"
                     /locus_tag="WHR98_000629"
     CDS             complement(1554..3668)
                     /gene="dnaX"
                     /locus_tag="WHR98_000629"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEZ2307337.1"
                     /translation="MAYQVLARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLT
                     GTRGVGKTTIARILAKSLNCENAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGID
                     NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH
                     KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDAL
                     SLLDQAIAMGSGSVAEQDVRQMIGAVDKQYLYELLTGIVNQDGEALLAKAQEMAACAV
                     GFDNALGELAILLQHLALIQAVPNALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHG
                     KRDLSLAPDEYAGFMMTLLRMLAFAPLAAASCDANAVIENTELKSPSAQTAEKETAAK
                     KPQPRPEAETAQTPVQTASAAAMPSEGKTAEPVTNQENNDIPPWEDAPDETAAGTAQA
                     SAKSIQTASEAGTPPKNQVSKNEAADNETDAPLSEVPSENPIQATPNNEALETEAFAH
                     EAPAKPFNGYSFPNDDYLVEDGAEIPPPDWEHAAPADAEEENNADESSNNEDHTPYAP
                     PPEFSTENWAAIVRHFARKLGAAQMPAQHSAWTEYHPDTGLMVLAMTAEARATADKKR
                     LDKIRDTLAQAYGLQLTLQTQDWRDEAGRETPAMQDKRVQAEDRQKAQALLEADPAAQ
                     KILQAFGAQWQPESLELAANRP"
     misc_feature    complement(2440..2479)
                     /gene="dnaX"
                     /locus_tag="WHR98_000629"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01843"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="This ribosomal frameshift element is known only in
                     the genus Neisseria; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01843"
     gene            complement(3763..5739)
                     /gene="mutL"
                     /locus_tag="WHR98_000630"
     CDS             complement(3763..5739)
                     /gene="mutL"
                     /locus_tag="WHR98_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HEZ2307338.1"
                     /translation="MSRIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIE
                     VELAGGGIRLIRVSDNGSGIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLAS
                     IASVSRLTLTSRQKDSSHATQVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKF
                     LKSENTEYAHCATMLERLALAHPHIAFSLKRDGKQVFKLPAQSLHERIAAIVGDDFQT
                     ASLEIDSGNGALRLYGAIAKPTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLH
                     NALTPAFVLFLDLPPEAVDVNVHPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTE
                     SVGNAGEVLHDITGVTPAPMPSENDSENLFNRASDYPTGNKPDTRNAFGASGKTAPMP
                     YQAARAPQQRSLSLRESRAAMNTYAELYKKTDDIDLELSRFEQARFGNMPSETPAPQT
                     DTPLSDGIPSQSELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQR
                     QENGRLQSQRLLIPVTFAASHEECAALADYAETLAGFGLELSDMGGNTLAVRAAPAML
                     GKSDVVSLAKDVLNELAQVGSSQTIEEHENRILATMSCHGSIRAGRRLTLPEMNALLR
                     DMENTPRSNQCNHGRPTWVKLTLKELDALFLRGQ"
     gene            5883..6068
                     /locus_tag="WHR98_000631"
     CDS             5883..6068
                     /locus_tag="WHR98_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3460 family protein"
                     /protein_id="HEZ2307339.1"
                     /translation="MYHYQSDATQFLNRLIEEKPELEQQRLENRGLLWDVELNPEEQE
                     NFEAAKVAKKPYTYYQD"
     gene            6079..6747
                     /locus_tag="WHR98_000632"
     CDS             6079..6747
                     /locus_tag="WHR98_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEZ2307340.1"
                     /translation="MTTHLSNVAPDLQNYLNSIGEPEHPVLTRLREKTEHHRMGKMAI
                     AREQAAVLVWLAKLIRAEKYLEVGVFTGYSSTALALALPEHGRITACDINVTFTDTAR
                     QVWNEAGVAHKISLHLQPALLTLDDLIVQGEAGSYDLALIDADKPPTPQYFERCLKLV
                     RQGGIIAIDNILLNGRVMREAASDAPPSVGILKDFNQNLPNDPRIVPITLPVGDGLTL
                     LLKK"
     gene            6747..7463
                     /locus_tag="WHR98_000633"
     CDS             6747..7463
                     /locus_tag="WHR98_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system YbgF family protein"
                     /protein_id="HEZ2307341.1"
                     /translation="MKTKLPLFIIWLSVSAACSSPVSRNIQDMRLEPQAEAGSSDAIP
                     YPVPTLQDRLDYLEGTLVRLSNEVETLNGKVKALEHAKTHPSSRAYVQKLDDRKLKEH
                     YLNTEGGSASAHTVETAQNLYNQALKHYKSGRFSAAASLLKGADGGDGGSIAQRSMYL
                     LLQSRARMGNCESVIEIGGRYANRFKDSPTAPEAMFKIGECQYRLQQKDIARATWLSL
                     IQTYPGSPAAKRAAAAIRKR"
     gene            7511..7996
                     /gene="purE"
                     /locus_tag="WHR98_000634"
     CDS             7511..7996
                     /gene="purE"
                     /locus_tag="WHR98_000634"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEZ2307342.1"
                     /translation="MIQIGIIMGSNSDWPVMRQAAQFLEEFGVEYEACVVSAHRTPDL
                     MFQYAETARARGIKAIIAGAGGAAHLPGMVAAKTTVPVLGVPVPSKYLRGEDSLLSIV
                     QMPKGVPVATFAIGEAGAANAALFAVSMLANETPELAQKLADFRAKQEQAVLSMELEQ
                     I"
     gene            complement(8179..9633)
                     /locus_tag="WHR98_000635"
     CDS             complement(8179..9633)
                     /locus_tag="WHR98_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEZ2307343.1"
                     /translation="MTTQTIKFHMKPETFKQNAAISLQDKPLRKSLRTAMDMLMTKRK
                     AVLTDEEELQSLRDLCEHVRQRSLSKLPALLEQLEENLTKLGVKVHWAETPTEACQII
                     HDIITAKNGKLMVKGKSMVSEEIELNHYLEAKGIKAVESDLGEFIVQMAGEKPTHIVM
                     PAIHKTKEQVSELFHQNLGTPLTDDVDQLTGFARKALRDIYSTADVGLSGVNFAVAET
                     GTLCLVENEGNGRLSTTVPPVHIAITGIEKVVAKLSDIPPLYSLLPRSAIGQNITTYF
                     NMITGPRRSEELDGPQEMHLVLLDNGRSQAYAEDQMRRTLQCIRCGACMNHCPVYTRI
                     GGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVEVCPVRIPITEQMQRLR
                     VEAQRSPTETVPHPIRGQGASHTFGEQMAWRTFNGIFSGSKTYRAFGWAATKFRNLTP
                     RKQLGWTQNRVPMKPAKKTLHELMAEKMRQKEQA"
     gene            complement(9630..10331)
                     /locus_tag="WHR98_000636"
     CDS             complement(9630..10331)
                     /locus_tag="WHR98_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEZ2307344.1"
                     /translation="MSARENILAKLKKADALPMEEPAVFDYYREMGVSWGSEVERLKH
                     WAAAMRAVKTEIYWVTKSNWMQVFREAAEGKGLKNILLPLATEHGQLARAALAGSNIE
                     PIAFEREIDTWKAEFFANIDAGFSSSQCGIARTGTLMLFSSPEEPRTLSLVPPVHFCL
                     FDTSKMYNEFHNAVEGEKLVENGMPTNVFLISGPSKTADIQLTLAYGAHGPRDLVILA
                     ILPDHISPADLEENA"
     gene            complement(10328..11107)
                     /locus_tag="WHR98_000637"
     CDS             complement(10328..11107)
                     /locus_tag="WHR98_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEZ2307345.1"
                     /translation="MSATIPPKIIRYDSNPTDVYFFGTCVLDLFMPEAGMDAIALIEQ
                     QGIRVHFPMAQSCCGQPAYSSGHPTEAFDVARAQLDLFPEEWPIVVPSGSCGGMMKHH
                     WPTLFKGSEYEERAVDCAGRIIEFTHFLLAIGFKPEDKGEPLKVAVHTSCAARREMNV
                     HLSGWQLIDGMENVERIVHDHESECCGFGGTFSVKQADISGAMVTDKVAALKETGATE
                     IISADCGCMMNIGGKIAKDEPDMPRPKHIASFLLERTGGKA"
     gene            11391..12797
                     /locus_tag="WHR98_000638"
     CDS             11391..12797
                     /locus_tag="WHR98_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEZ2307346.1"
                     /translation="MEKNTLSARAPSPWLPLLLAIAIFMQMLDATILNTALPEIATDL
                     DESPLDMQLAVVAYTLTVALLIPLSGYLADRFGTKKVFFGSIAVFMLGSALCAASGSL
                     FELTLSRVVQGIGGSMLVPIPRLTILRVYDKSKLLNAINYAVMPALIGPVLGPLAGGY
                     LVEYASWHWIFLLNLPIGLLGFILGRNIMPDVKGNDTALDFKGYLIFSAAACLLLLSA
                     ESLSHALPPYFALLPLCGGLLFARRYFRHMKTASKPIYSADLFLIRTFRLGLAGNLFS
                     RLGISSIPFLMPLMFQVAFGFGASLSGWLVAPVALSSLLVKPLIAPLMKRFGYRTVLL
                     WNTKLLAAFIMLLALPDGNSPLWIWIFLSLAIGACNSLQFSAMNTLTLADLRPQQTGS
                     GNSLMAVNQQLAISMGIVVGALILKNWTFLIPASSGLHSAFRMTLLSIGGITLASSLV
                     FKRLHVSDGANLTRNTLS"
     gene            12909..14435
                     /locus_tag="WHR98_000639"
     CDS             12909..14435
                     /locus_tag="WHR98_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HEZ2307347.1"
                     /translation="MKTRSLISLLCLLLCSCSSWLPPLEERTESRHFNTSKPVRLDNI
                     LQIRHTPHTNGLSDIYLLNDPHEAFAARAALIESAEHSLDLQYYIWRNDISGRLLFNL
                     VYLAAERGVRVRLLLDDNNTRGLDDLLLALDSHPNIEVRLFNPFVFRKWRALGYLTDF
                     PRLNRRMHNKSFTADNRATILGGRNIGDEYFKVGEDTVFADLDILATGSVVGEVSHDF
                     DRYWASHSAHNATRIIRSGNIGKGLQALGYNDETSRHALLRYRETVEQSPLYQKIQTG
                     RIDWQSVQTRLISDDPAKGLDRDRRKPPIAGRLQDALKQPEKSVYLVSPYFVPTKSGT
                     DALAKLVQDGIDVTVLTNSLQATDVAAVHSGYVKYRKPLLKAGIKLYELQPNHAVPAT
                     KDKGLTGSSVTSLHAKTFIVDGKRIFIGSFNLDPRSARLNTEMGVVIESPKIAEQMER
                     TLADTTPEYAYRVTLDRHNRLQWHDPATRKTYPNEPEAKLWKRIAAKILSLLPIEGLL
                     "
     gene            14490..15023
                     /locus_tag="WHR98_000640"
     CDS             14490..15023
                     /locus_tag="WHR98_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEZ2307348.1"
                     /translation="MFPPDKPLFLCLSALLLASCGTTSGKHRQPKPKQTVRQIQAVRI
                     SHIDRTQGSQELMLHSLGLIGTPYKWGGSSTATGFDCSGMIQFVYKNALNVKLPRTAR
                     DMAAASRKIPDSRLKAGDLVFFNTGGAHRYSHVGLYIGNGEFIHAPSSGKTIKTEKLS
                     TPFYAKNYLGAHTFFTE"
     gene            complement(15066..16367)
                     /gene="aroA"
                     /locus_tag="WHR98_000641"
     CDS             complement(15066..16367)
                     /gene="aroA"
                     /locus_tag="WHR98_000641"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEZ2307349.1"
                     /translation="MTESLRLPAASLKPSTVALPGSKSISNRTLLLAALSDNTCEIHS
                     LLKSDDTDRMLEALDKLGVEIEYLAEDRLKVHGTGGRFPNRTADLFLGNAGTAFRPLT
                     AALAVLGGDYHLHGVPRMHERPIGDLADALRIAGADVEYLGKEHYPPLHIGKRQDNGE
                     RVIPIKGNVSSQFLTALLMALPLTGQAFEIRMVGELISKPYIDITLKLMAQFGVQVAN
                     ENYRVFKIPADAHYHAPEHLHVEGDASSASYFLAAGLIAATPVCVIGIGANSIQGDVA
                     FARELEKIGADVVWGENFVEVSRPKERAVQSFDLDANHIPDAAMTLAIVALATGQTCT
                     LRNIGSWRVKETDRIAAMANELRKLGAKVVEEAEAIHITPPETPTPDAVIDTYDDHRM
                     AMCFSLVSLLGVPVVINDPKCTHKTFPTYFDVFSSLTETAE"
     gene            16762..17238
                     /gene="greA"
                     /locus_tag="WHR98_000642"
     CDS             16762..17238
                     /gene="greA"
                     /locus_tag="WHR98_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEZ2307350.1"
                     /translation="MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSE
                     NAEYEAAKERQGFIEGRISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEH
                     VTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI"
BASE COUNT         3609 a         4665 c         4839 g         4221 t
ORIGIN      
        1 accttagaga atcgttctct ttgagctaag gcgaggcaac gccgtactgg tttttgttaa
       61 tccactatat ttttgcccga cggggtgaaa aatacagttg ctacagcccg acctacgccc
      121 gctttgcctc tatcctgcgc ccttttatgt gcaacacttt gcacttgctg aacaaaattc
      181 aaacgaccct ttatatcaaa tgcaaaaaat atgccgtcat tcccgcgaac gcgggaatcc
      241 agacccctcg gcatggaaat ttatcgagta aaacggtttc tcagattcta cgttctagat
      301 tcccgcgttc gcgggaatga cggtcgaggg tttctgtttt ttccgataga ttcccgtggt
      361 ttttcggtta ctggattccc gcgttcgcgg gaatgacggt cgggggtttc tgttttttcc
      421 gatagattcc tgtggttttt cggttactgg attcccgctt ttgcgggaat gacggggtgt
      481 aagtttctgc tcccacgggg ctggattccc gttttcacgg gaatgacgaa atttcagacg
      541 gcatcggaat ttttgtgttt tggtgggctt cagcctgccg catcccatcg attctgccgt
      601 ttttaccgtt tccgccgaat cctgcaaact gatgccgtca ttcccgcgaa ggcgggaatc
      661 tagacctgtc ggcacggaaa tttatcgagt aaaacggttt ctcagattct acgttctaga
      721 ttcccgcgtt cgcgggaatg acggcggcgg ggggttctgt tttttccgat agattcccgt
      781 ggtttttcgg ttactggatt cccgcgttcg cgggaatgac ggggtgtaag tttctgctcc
      841 gacggggttg gattcccgct ttcacgggaa tgacgaagtt tcagacggca tttaagcggt
      901 acggatgtgt aaataatggt agggtgggct tcagcctgcc gattcccgct attcttgccg
      961 tttttgcgtt cttatcattc tcactgtttt taccgttcac gccgaatctt gcaaactgat
     1021 gccgtcattc ccgcgaaggc gggaatccag acccctcggc acggaaattt atcgagtaaa
     1081 acggtttctt agattctacg ttctagattc ccgcctgcgt gggaatgacg gtcggggatc
     1141 agcggaagaa gtcgcccact ccggggggta gaccttgcgt gaatgcgccc attgttttgt
     1201 ttgcggtttc ttcggctttg cctcgggcgg atttgagggc ggcgaggatg aggtcttcaa
     1261 gcatttcttt gtcgtcggcg gcttcttgaa tcaaatcggg gctgatgtcg attttgcgta
     1321 cttcgtgcgc gcaggtcatt gtgattttga ccaggccgtt gcctgcttcg ccttcgattt
     1381 cggtttcggc gagtttggct tgcgcttttt tcatattttc ctgcatttgc tgcgcctgtt
     1441 tcatcaggcc gcctaatccg gcttttccga acatactgaa tactcctgtc tgttttgatt
     1501 gaataaggga aacggcaatg ccgtccgaag ggttcgggcg gcattatatc tgtttatggc
     1561 cggtttgccg ccaattccag tgattcgggc tgccattgcg cgccgaatgc ttggaggatt
     1621 ttttgtgcgg cggggtcggc ttcgagcaat gcttgtgctt tttgcctgtc ttcggcttgg
     1681 acgcgcttgt cctgcatcgc gggggtttcc cggccggctt cgtcacgcca gtcttgggtt
     1741 tgcagggtga gttgcagccc gtaggcttgg gcaagggtgt cgcggatttt gtcgaggcgt
     1801 tttttgtcgg cggtggcgcg tgcttcggcg gtcattgcca aaaccatcag accggtgtcg
     1861 ggatggtatt ccgtccacgc ggagtgttgc gccggcattt gcgccgcgcc gagtttgcgg
     1921 gcgaagtgcc ggacgatggc tgcccagttt tcggtggaaa attcgggcgg cggggcgtat
     1981 ggcgtgtggt cttcgttgtt gctgctttcg tcggcgttgt tttcttcttc cgcatcggca
     2041 ggggcggcgt gttcccaatc gggcggtggg atttctgcgc cgtcttctac gaggtagtca
     2101 tcattcggaa agctgtaacc gttgaaaggt tttgcaggag cttcgtgtgc aaatgcttct
     2161 gtttcaaggg cttcattatt cggtgttgcc tgaatggggt tttcagacgg cacttcggac
     2221 aagggggcat cggtttcgtt gtcggctgct tcgttcttgg aaacttggtt tttgggcggc
     2281 gttccggctt cggatgccgt ctgaatgctt tttgccgatg cttgcgccgt gccggctgcg
     2341 gtttcgtccg gcgcgtcttc ccaaggcgga atatcgttgt tttcttgatt ggtaacgggt
     2401 tcggcagttt tgccttcaga cggcattgct gctgcggatg ccgtctgaac gggtgtttgg
     2461 gcggtttccg cttcagggcg cggttggggc ttttttgcgg cggtttcctt ttcggcggtt
     2521 tgtgccgatg gggattttag ttcggtattt tcaatcacgg catttgcatc acacgatgct
     2581 gccgccaagg gcgcaaacgc cagcatacgc agcagggtca tcataaagcc ggcgtattcg
     2641 tcgggggcga ggctgaggtc gcgtttgccg tggacggcga tttggtagta aagctggatt
     2701 tgttcgccgc ttatggtttg ggcgaggcgg tgcaaaatat cggaatcggg gtcgtcgtgc
     2761 gccaaggcat tcggcactgc ctgtatcagg gcgaggtgtt gcagcagtat ggcaagttcg
     2821 cccaaggcgt tgtcaaagcc gacggcacac gcagccattt cctgtgcttt tgccagcagg
     2881 gcttcgccgt cttggttgac gatgcctgtc agcagttcgt acaggtattg tttatcgacc
     2941 gcaccgatca tttggcggac gtcttgttcg gcaacgctgc ccgaacccat ggcgatggct
     3001 tggtcgagca ggctcaaggc atcgcgcatc gatccggcgg cggcgcgtcc caaaagttgc
     3061 agggcggggg gggcgtaggc gattttttcg ctgtcgagga cgtgggcaag gtggtcggca
     3121 acctgctgcg cggtcatatt gcgtaagacg aattgcaggc agcggcttaa tacggtaacg
     3181 gggactttgt gcggatcggt cgtggcaagg atgaatttga cgtgttcggg cggctcttcc
     3241 agcgttttga gcatagcgtt gaacgcgctt ttggaaagca tatgcacttc gtcgatgata
     3301 tagactttgt atttgccggc ggtcggcgcg tattgggcgt tttccaagac ttcgcggatg
     3361 ttgtcgatgc ctgtgttgga ggcggcgtcg atttcgagca ggtcgacata gcgtccggca
     3421 tcgatctgcg tacagctttc gcatacgccg caaggttcac cgtgttgcgc gttttcgcag
     3481 ttgaggcttt tggcaaggat gcgggcgatg gtggttttgc ccacgccgcg cgtaccggtc
     3541 agcaggtagg cgtggtgcag cctgccttcg tccaaggcat tttgcagggc tttgacgacg
     3601 tgttcctgac cgactaggtc ggaaaaggtt ttgggccgcc attttcgggc gagaacttga
     3661 taggccatat ttttctcttg gtttcggtcg tgatgtttct gtcggtgcgt cggaatgccg
     3721 tctgaacggc ggtctcgggc ggcgtattct agcactttcg gcttattgtc cgcgcaagaa
     3781 cagtgcgtcc aattctttca aagtcagttt gacccaagtc ggacggccgt ggttgcactg
     3841 gttgctgcgc ggcgtgtttt ccatatcgcg caggagcgca ttcatttcgg gcagggtaag
     3901 ccggcggccg gcgcggatcg agccgtggca ggacatggtg gcgaggatgc ggttttcgtg
     3961 ttcctcgatg gtttggctgc tgccgacttg ggcgagttcg tttaatacgt ctttggcgag
     4021 ggagacgaca tcggatttgc ccaacattgc gggtgcggcg cggacggcga gggtgttgcc
     4081 gcccatatcg gataattcca gcccgaagcc tgccagcgtt tcggcataat cggcaagggc
     4141 ggcgcattct tcgtgggacg cggcaaaggt tacgggaata agcaggcgtt ggctttgcag
     4201 cctgccgttt tcctgacgct ggcgtttcat tttctcgtag ttgacgcgtt cggcagcggc
     4261 gtgcatatcg atgagcagca ggctgtcttc ggcttgggca agaatgtaga tgccaagtaa
     4321 ttgggcaatg gcgaaaccga gcggcggcag ttcggattgg gaggggatgc cgtctgaaag
     4381 cggcgtatct gtttggggag caggcgtttc agacggcata ttgccgaaac gtgcctgctc
     4441 gaatcggctt aactcaaggt cgatgtcgtc ggtttttttg taaagctcgg cataggtgtt
     4501 cattgccgcg cggctttcgc gcagggacag gctgcgttgt tgcggcgcac gcgcggcttg
     4561 gtagggcata ggcgcggttt tgcctgatgc accaaaggca ttgcgcgtat cgggtttgtt
     4621 gcctgtcggg tagtcggatg cgcgattaaa cagattttcg ctgtcgtttt cagacggcat
     4681 tggtgcaggc gtaacgccgg taatgtcgtg caacacttcg cccgcgttgc cgacgctttc
     4741 ggtcaggtcg gcgcgcgtgt cggcaagggc tttgttgagc gtgtggaaca cgagttggtg
     4801 tacctgctga ctgtcgcgga agcggatttc ggttttggtc gggtggacgt tgacatctac
     4861 ggcttcgggc ggcaggtcga gaaagaggac gaaagcaggt gtcagcgcgt tgtgcaatac
     4921 gtcgcggtat gcctgcttga cagcatggag catgactttg tcgcggacaa aacgatggtt
     4981 gacaaagcag tattgtttgt cggttttgcc tttggcgaaa gtcggcttgg caatcgcgcc
     5041 atagagccgc aatgcgccat tgccgctgtc gatttccaag gatgccgtct gaaagtcatc
     5101 gccgacaatg gcggcaatcc gttcatgcag gctttgtgca gggagtttga acacttgttt
     5161 gccgtcgcgt ttgagtgaga aggcgatgtg cggatgcgcc agagcaagtc gttcgagcat
     5221 ggtggcgcag tgggcgtatt cggtgttttc cgatttgagg aacttgcgcc gcgcgggggt
     5281 attgaagaag agttcggcag cttcgatggt ggtgccgacg gggtgggcgg ctgccgtagg
     5341 gctgctgagt ttgccgtctt cggctttgac ttgggtcgcg tgcgaactgt ctttttgacg
     5401 gctggtcagg gtcaggcggc tgacggaggc gatgcttgcc aagccttcgc cgcgaaagcc
     5461 catgctggca acgtgttcca aatcgtttaa ggttttgatt ttgctggtgg cgtggcggtg
     5521 gagcgcgagt tcgatgtcgt ccggatggat accgctgccg ttgtcgctga cgcgaatcag
     5581 gcggatgccg ccgcccgcca gttcgacttc aattgctgtt gcgcctgcat cgatactgtt
     5641 ttcaacgatt tctttcaggg cgttggcagg gcgttcgacc acttcgccgg cagcgatttg
     5701 gttgacaaga tggtcgggca gggcggcgat tcgggacata aggcgggctt ccgttgcaaa
     5761 aaacgtctta ttctataata aaacccctta tctttctgcc cgtattcttg ataaaagccg
     5821 tttatcccgt ttggaaaata ccagtataat cacgccatat tccgtaaaat tggagcacaa
     5881 agatgtatca ctaccaatcc gatgccacac aattcctcaa ccgcctgatt gaagaaaaac
     5941 ctgagttgga acagcagcgt ttggaaaaca gggggctttt gtgggatgtc gaactcaatc
     6001 ccgaagaaca ggaaaacttc gaggcggcaa aagtagcgaa aaaaccttat acctattacc
     6061 aagactgaac ccgccgaaat gacgacccat ctgtccaatg tcgcaccgga cctgcaaaac
     6121 tatctgaaca gcatcggcga acccgaacat cccgttttga cgcggctgcg tgagaagacc
     6181 gagcatcacc gtatgggcaa aatggcgatt gcgcgcgaac aggcggcggt tttggtttgg
     6241 ctggcaaagc tgattcgcgc ggaaaaatat ctggaagtcg gcgtgtttac cggatacagc
     6301 agcaccgcgc ttgcattggc gttgccagaa cacgggcgga ttaccgcctg cgacatcaat
     6361 gtaaccttta ccgatacggc gcgtcaggtt tggaacgagg caggtgtggc acataaaatc
     6421 agcctgcacc tgcaacccgc attgctgaca ttggatgatt tgattgtaca gggtgaagcc
     6481 ggaagctacg atttggcact gatagacgca gacaaaccgc ccacgccgca atatttcgag
     6541 cgttgcctca aactcgtccg gcaaggcggc atcattgcca ttgacaatat tttgttgaac
     6601 ggaagggtga tgcgcgaagc ggcttccgac gcgccgccca gtgtcggcat cctcaaagat
     6661 ttcaatcaaa acctgccgaa cgacccgcgc atcgtcccca tcaccctgcc cgtcggcgac
     6721 ggtttgaccc tgcttctgaa aaaataatga agaccaaatt accgcttttt atcatttggc
     6781 tgtccgtatc cgccgcctgt tcttcccctg tttcccgcaa tattcaggat atgcggctcg
     6841 aaccgcaggc agaggcaggt agttcggacg ctattcccta tcccgttccc actctgcaag
     6901 accgtttgga ttatctggaa ggcacactcg tccgcctgtc gaacgaagtg gaaaccttaa
     6961 acggcaaagt caaagcactg gagcatgcga aaacacaccc ttccagcagg gcatacgtcc
     7021 aaaaactcga cgaccgcaag ttgaaagagc attacctcaa taccgaaggc ggcagcgcat
     7081 ccgcacatac cgtcgaaacc gcacaaaacc tctacaatca ggcactcaaa cactataaaa
     7141 gcggcaggtt ttctgccgct gcctccctgt tgaaaggcgc ggacggaggc gacggcggca
     7201 gcatcgcgca acgcagtatg tacctgttgc tgcaaagcag ggcgcgtatg ggcaactgcg
     7261 aatccgtcat cgaaatcgga gggcgttacg ccaaccgttt caaagacagc ccaaccgcgc
     7321 ccgaagccat gttcaaaatc ggcgaatgcc aatacaggct tcagcaaaaa gacattgcaa
     7381 gggcgacttg gctcagcctg atacagacct atcccggcag cccggcggca aaacgcgccg
     7441 ccgcagccat acgcaaacga tagtttttcc atttttccgc tttttacccc atccgcacca
     7501 aggaggattt atgattcaaa tcggcatcat catgggcagc aacagcgatt ggcccgttat
     7561 gcggcaggca gcgcagtttc ttgaagagtt cggcgtagaa tatgaggcgt gcgtcgtttc
     7621 cgcacaccgc accccggatt taatgttcca atacgccgaa accgcacggg cgcgcggcat
     7681 caaagccatc atcgcgggtg cgggcggcgc ggcgcattta cccggtatgg ttgccgccaa
     7741 gaccaccgtc cccgttttgg gcgtacccgt ccccagcaaa tacctgcgcg gcgaagattc
     7801 gcttttatcg attgtacaaa tgcccaaagg cgtacccgtc gccacattcg ccatcggtga
     7861 ggcaggcgcg gcaaatgccg cattgttcgc cgtttccatg ctcgccaacg aaacccccga
     7921 actggcgcaa aaactggcag acttccgagc caaacaggaa caggctgttt tgagtatgga
     7981 attggaacag atttaaaacc cgccgtccgc gaatatatag tggcttaaat ttaaaccagt
     8041 acggcgttac ctcgccttgc cgtactattt gtactgtctg cggcttcgtc gccttgtcct
     8101 gatttttgtt aatccactat acaaatgccg tctgaagccc tgtttcgggt ttcagacggc
     8161 atttttgcga acaacttttt atgcctgttc tttttggcgc attttttctg ccatcagttc
     8221 gtgcagggtt ttcttcgccg gtttcatcgg cacgcggttt tgcgtccaac ccaactgttt
     8281 gcgcggggtc aggttgcgga acttggtggc tgcccaaccg aaggcgcggt aggttttgct
     8341 gccgctgaaa ataccgttga atgtgcgcca cgccatttgt tcgccgaagg tatgcgatgc
     8401 gccttgcccc cggatggggt gcggcacggt ttcggtcggc gaacgttgcg cttcaacgcg
     8461 caaacgctgc atttgttcgg taatcgggat gcgtaccgga caaacttcca cacacgcacc
     8521 gcacatggta caggcggttg gcagatcgcg ggtggcatcc agacccaaca ggtgagggga
     8581 aataatctcg ccaatcgggc cgggataggt tgtgccgtat gccgcgccgc cgatgcgggt
     8641 ataaaccggg caatggttca tacacgcgcc gcaacggata cattgcaggg tgcggcgcat
     8701 ttggtcttcg gcataagcct ggctgcggcc gttgtcgagc agaaccaagt gcatttcttg
     8761 cggaccgtct aattcttcac tgcggcgcgg gccggtaatc atattgaaat aggttgtgat
     8821 gttttgaccg atggcggagc gcggcagcag actgtacaag ggtgggatgt cggacaattt
     8881 cgccaccact ttttcaatgc cggtaatagc gatatgcacg ggcggaacgg tggtactcaa
     8941 gcgaccgttg ccctcgtttt ccaccagaca cagcgtacct gtttcagcaa cggcaaagtt
     9001 tacgccactc aagccgacat cggcagtgct gtaaatatcg cgcagggctt tgcgggcgaa
     9061 gccggtcagt tggtccacat cgtctgtcag cggtgtgccg aggttttggt ggaacagttc
     9121 gctcacctgt tctttggttt tatggattgc aggcatcacg atatgggtcg gtttttcgcc
     9181 tgccatttgg acgatgaact cgcccaagtc gctttctacc gctttaatgc cttttgcttc
     9241 aagataatgg ttcagctcga tttcctcgct gaccatggat ttgcctttga ccatcagctt
     9301 gccgtttttg gctgtgatga tgtcgtggat aatttggcag gcttcggtcg gggtttctgc
     9361 ccagtgcact ttcacgccca acttagtcag gttttcttcc agctgctcca gcagggctgg
     9421 caatttagac aatgagcgct gacggacgtg ttcgcacaaa tcgcgcaggc tttgcagctc
     9481 ttcttcgtcg gtcaaaacgg ctttgcgttt ggtcatcagc atatccatcg cggtacgcag
     9541 gcttttgcgc aaaggcttgt cttgaaggga aattgcggcg ttttgcttga aagtttccgg
     9601 cttcatgtga aatttgatgg tttgcgtagt catgcgtttt cctccaaatc ggcaggggaa
     9661 atgtggtcgg gcaggatggc gaggatgacc aaatcgcgcg ggccgtgcgc gccgtaagca
     9721 agcgtcagtt ggatgtctgc ggttttggac gggccggaaa tcaggaatac attggtcggc
     9781 ataccgtttt ccaccagttt ttcgccttcg acggcgttgt gaaactcgtt gtacatcttg
     9841 gacgtatcga acaggcagaa atgcacgggc ggaacgagac tcaaagtacg cggctcttcg
     9901 gggctggaaa acagcatcag cgtgccggta cgggcgatgc cgcattgcga gctgctaaag
     9961 cctgcatcga tgttcgcgaa gaactcagct ttccaagtat cgatttcgcg ctcgaaagca
    10021 atcggttcga tattgctgcc cgccaatgcg gcacgcgcca gttgaccgtg ctcggttgcg
    10081 agaggcagca ggatgttttt caaacccttg ccttctgccg cttcgcggaa aacctgcatc
    10141 caattgcttt tcgtcaccca ataaatttcg gttttgaccg cgcgcatagc ggcagcccaa
    10201 tgtttcagac gctcaacttc gctgccccaa gaaacaccca tttcacggta ataatcaaaa
    10261 accgcaggtt cttccatcgg caatgcgtcg gcttttttca gttttgccaa aatattttcg
    10321 cgcgcgctca tgctttgcct ccggtacgtt ccaacaagaa ggatgcgata tgtttcggac
    10381 gcggcatatc cggttcgtcc ttagcaattt tgccgccgat gttcatcata cagccgcagt
    10441 ccgcgctgat gatttcggtt gcgccggttt ctttcagcgc ggcgactttg tcggttacca
    10501 tcgcgccgga aatatcggct tgtttgacgg agaatgtgcc gccgaagccg caacattcgc
    10561 tttcgtggtc gtggacgatg cgttcgacgt tttccatacc gtcaatcagt tgccagcccg
    10621 agagatggac attcatttcg cggcgggcgg cgcaggaagt gtgaacggcg actttgagcg
    10681 gttcgccctt gtcttcgggt ttgaaaccga tggcaagcag gaaatgggta aactcgatga
    10741 tgcggccggc gcaatccaca gccctttcct cgtactcgct gcctttaaac agcgtcggcc
    10801 aatggtgttt catcataccg ccgcacgaac cggacggtac gacaatcggc cactcctcgg
    10861 ggaaaaggtc gagttgcgct ctggcgacat caaaggcttc ggtcggatgg ccggatgaat
    10921 aggcgggctg gccgcagcag ctttgcgcca tcgggaaatg gacgcgtatg ccctgttgct
    10981 cgattagggc aatggcatcc atgcctgctt cgggcataaa aagatcaagg acgcaagtgc
    11041 cgaaaaaata gacatcggtc ggattgctgt cgtatcggat gatttttggg ggaatggttg
    11101 cgctcatgtt ttttgataac gggaaacccg tttttttctg tagaaaggta agcgtttact
    11161 ttaagtaatt gactgttgcg ggtcaagtct aattttaaaa aataatccgg tttttcttac
    11221 aaactacccc ataacgctta ctgtacctta atctgatggt tttcgataat aattatcatt
    11281 acaatgcaat accggttcgt ttgcttgtga acattcaaga tgccgactct gacggcattc
    11341 agacagcgtc tgaaaacaat aacggcacaa ggatggggta caatcgccct atggaaaaaa
    11401 acaccctatc cgcccgcgca ccatcccctt ggctgccgct tctgctggca attgccattt
    11461 ttatgcagat gttggatgcg accattttaa ataccgcact gcctgaaatt gccaccgacc
    11521 tggacgaatc gcctctggat atgcaactgg cagtcgttgc ctatacgctg acggttgccc
    11581 tgctgattcc tttgagcggt tatttggcgg acaggttcgg aacgaaaaaa gtctttttcg
    11641 gttcgattgc cgtttttatg ctcggatcgg cattgtgcgc cgcatcgggt tcgctgtttg
    11701 aattgacgct ttcccgtgtc gttcagggca tcggcggttc gatgctggtt ccgataccgc
    11761 gtctgaccat cttgcgtgtg tacgacaagt ccaagctgct caacgccatc aattatgcgg
    11821 ttatgcccgc attaatcgga ccggttttag ggcctttggc gggcggttat ctggtcgaat
    11881 acgcttcgtg gcactggatt ttcctgctca acctgcccat cggtcttctg ggtttcatat
    11941 tgggacgcaa catcatgccc gatgtcaaag gcaacgatac cgctctggat ttcaaaggct
    12001 atctgatttt ttctgccgcc gcgtgcctct tgttactttc ggcagaaagc ctgtcgcacg
    12061 cgctgcctcc gtattttgca ctgttgccgc tgtgcggcgg actgctgttt gcacgccgtt
    12121 atttccgaca tatgaaaact gcgtccaaac cgatttattc cgccgacctg tttctgatac
    12181 gcactttccg tctgggactg gcgggcaatc tgttcagccg tctcggcatc agctcgattc
    12241 cttttctgat gcccctgatg tttcaagtcg ctttcggctt cggcgcaagc ctgtcgggtt
    12301 ggctggtcgc ccccgtcgcc ctgtcttcgc tgctggtcaa accgctgatt gcaccgctca
    12361 tgaaacgttt cggctaccgc acggtactgc tttggaacac caagctgctt gccgccttca
    12421 tcatgctgct cgccctgcct gatggaaact cgccgctgtg gatttggatt ttcctctcgc
    12481 tggcgatcgg cgcgtgcaac tccctacagt tttctgccat gaacacactg accctcgccg
    12541 atttgcgccc gcaacagacc ggcagcggca acagcctgat ggcggtcaac caacagcttg
    12601 ccatcagcat gggcattgtt gtcggcgcat taatccttaa aaactggaca tttctgatac
    12661 cggcttcttc aggtctgcat tccgccttcc gtatgaccct gctcagcatc ggcggcatca
    12721 cccttgcctc gtcgttggtt ttcaagcgtc tgcacgtttc agacggcgca aacctgacac
    12781 ggaacacact gtcctaaagc ggtccgcacg caaaactttt acccgtttca acgtttggat
    12841 tatgattccg cacatccatg cgcgccaacc ccaaaacaca ggcaatgccg tctgaaacca
    12901 tatccctgat gaaaacacgc agcctaattt cccttttatg cctccttctc tgttcatgtt
    12961 cttcatggtt gcccccactg gaagaacgga cggaaagccg tcatttcaat acttccaaac
    13021 ccgtccgcct ggacaacatc ctgcaaatcc ggcacacccc tcataccaac gggctatccg
    13081 atatctatct gctgaacgac ccccacgaag cctttgccgc ccgcgccgcc cttatcgaat
    13141 ctgccgaaca cagcctcgat ttgcaatact acatctggcg caacgacatt tccggccgac
    13201 tgctgttcaa cctcgtgtac cttgccgcag aacgcggtgt gcgcgtacgc ctgctgttgg
    13261 acgacaacaa cacgcgcgga ttggacgacc tcctgctcgc cctcgacagc catcccaata
    13321 tcgaagtgcg cctgttcaac cccttcgtct tccgcaaatg gcgcgcactc ggctacctga
    13381 ctgacttccc ccgcctcaac cgccgcatgc acaacaaatc ctttaccgcc gacaaccgcg
    13441 ccaccatact cggcggacgc aatatcggcg acgaatactt caaagtcggt gaggacaccg
    13501 ttttcgccga cctggatatc ctcgctaccg gcagcgtcgt cggcgaagta tcgcacgact
    13561 tcgaccgcta ctgggcaagc cattccgccc acaacgccac gcgcatcatc cgcagcggca
    13621 acatcggcaa gggtcttcaa gcactcggat acaacgacga aacgtccaga cacgcgctcc
    13681 tgcgctaccg cgaaaccgtc gaacagtcgc ccctctacca aaaaatacag acaggacgca
    13741 tcgactggca gagcgtccaa acccgcctga tcagcgacga ccctgcaaaa ggactcgacc
    13801 gcgaccgccg caaaccgccg attgccgggc ggctgcaaga cgcgctcaaa cagcccgaaa
    13861 aaagcgtcta tctggtttca ccctatttcg tccccacaaa atccggcaca gacgcactag
    13921 caaaactggt gcaggacggc atagacgtta ccgttctgac caactcgcta caggcgaccg
    13981 acgttgccgc cgtccattcc ggctatgtca aataccgaaa accgctgctc aaagccggca
    14041 tcaaactcta cgagctgcaa cccaaccatg ccgtccctgc cacaaaagac aaaggcctga
    14101 ccggcagctc cgtaaccagc ctgcacgcca aaaccttcat tgtggacggc aaacgcatct
    14161 tcatcggttc gttcaacctc gacccccgtt ccgcgcgtct caacaccgaa atgggcgttg
    14221 ttatcgaaag ccccaaaatc gcagaacaga tggagcgcac ccttgccgat accacccccg
    14281 aatacgccta ccgcgttacc ctcgacaggc acaaccgcct gcaatggcac gatcccgcca
    14341 cccgaaaaac ctacccgaac gaacccgaag ccaaactttg gaaacgcatc gccgcaaaaa
    14401 tcctatccct gctgcccata gaaggtttat tatagaaatg ccgtctgaaa caccttcaga
    14461 cggatatccg aacccgcaaa ggaaaaacca tgtttccccc cgacaaaccc cttttcctct
    14521 gtctcagcgc actactcctc gcctcatgcg gcacgacctc cggcaaacac cgtcaaccga
    14581 aacccaaaca gacagtccgg caaatccaag ccgtccgcat cagccacatc gaccgcacac
    14641 aaggttcgca ggaactcatg ctccacagcc tcggactcat cggcacgccc tacaaatggg
    14701 gcggcagcag caccgcaacc ggcttcgatt gcagcggcat gattcaattc gtttacaaaa
    14761 acgccctcaa cgtcaagctg ccgcgcaccg cccgcgacat ggcggcggca agccgcaaaa
    14821 ttcccgacag ccgcctcaag gccggcgacc tcgtattctt caacaccggc ggcgcacacc
    14881 gctactcaca cgtcggactc tacatcggca acggcgaatt catccatgcc cccagcagcg
    14941 gcaaaaccat caaaaccgaa aaactctcca caccgtttta cgccaaaaac tacctcggcg
    15001 cacatacttt ttttacagaa tgagccgccc gccgcgccgc gccggaatcg cggcaaaatg
    15061 ccgccttatt ccgctgtttc ggtcagcgat gagaacacgt cgaaataagt cgggaaggtt
    15121 ttgtgggtgc atttcggatc gttgatgacg acgggtacgc ccaacagcga aaccagcgag
    15181 aaacacatcg ccatgcggtg gtcgtcgtac gtgtcgatga cggcgtcggg tgtcggcgtt
    15241 tcgggcgggg tgatgtgaat tgcttcggct tcttcgacga cttttgcccc gagtttgcgc
    15301 aactcgtttg ccatcgcggc gatgcggtcg gtttctttga cgcgccacga accgatgttg
    15361 cgcagcgtgc aggtttgccc tgtagcaagc gcgacgatgg cgagggtcat ggcggcatcg
    15421 gggatatggt tcgcatccaa atcaaaggat tggacggcac gttccttcgg gcgtgaaact
    15481 tcgacgaagt tttcgcccca aaccacgtcc gccccgattt tttccagctc gcgggcaaag
    15541 gcgacatcgc cctgtatgct gtttgcgccg ataccgataa cacagacggg cgtggcggca
    15601 atcaaaccgg ctgcgaggaa gtaggacgcg ctggaggcat cgccttcgac gtgcaagtgt
    15661 tcgggcgcgt ggtagtgcgc atcggcggga attttgaaga cgcggtagtt ttcattggca
    15721 acctgtacgc cgaattgcgc catcagtttt aaagtaatgt cgatataggg cttggaaatc
    15781 aattcgccga ccatacggat ttcaaacgcc tgcccggtca gcggcaacgc cattaaaagg
    15841 gcggtcagaa actggctgga cacattgcct ttaatcggaa tcacgcgttc gccgttgtct
    15901 tgacgtttgc cgatatgaag cggcggatag tgttccttgc cgagatattc gacatcggcg
    15961 ccggcaatcc gcagcgcatc ggccaaatcg ccgatggggc gttcgtgcat acgaggcacg
    16021 ccgtgcagat gataatcgcc gcccaaaacg gcaagtgcgg cagtcagcgg acggaacgcc
    16081 gtgcccgcgt tgcccaaaaa caaatcggca gtgcggttgg ggaagcgtcc gcctgtgccg
    16141 tgcactttca gacggtcttc ggcaagatat tcgatttcaa cgccgagttt atcgagtgct
    16201 tcgagcatac ggtcggtatc gtcggatttg agcagggaat ggatttcaca agtattgtcg
    16261 gacaaggcgg cgagcagcag ggtgcggttg ctgatgcttt tggagccggg cagggcgacg
    16321 gtggaaggtt tgagcgaggc ggcagggagg cggagggatt cggtcatggc aaaacgtcaa
    16381 tattataaag ataaaaacag cctgcattat actggtgcaa atgctgtatg aaaaatctca
    16441 ggtttggcat tttcggtttt aaagtccgtg aatgtggttt tttatgccga aaattgatta
    16501 tttttaaatt ttttgtttct aaaatttttt tgccggcata ttttcggctt ttgttgcggg
    16561 caggtggcgt ttgcggacgg tacggtacga ttgccaattt catagaattt ggtagaatag
    16621 ccgctgttca acgacagaca agccgccgat tttccgggcg gcttgtattt ttattttaat
    16681 atccggacgc acaaaacaag acggtacgcg gtatgcttgc tgccgcaaaa cggtgtgccg
    16741 gaatatggag aaaaaagacc gatgcaaaaa atccccctga ccgtacgcgg tgcggaattg
    16801 ctgaaacagg aattgcagca gctcaaaagc gtggcgcgtc ccgaagtgat cgaagcgatt
    16861 gccgaagccc gttcgcacgg cgatttgtcc gaaaacgccg aatacgaagc cgccaaagaa
    16921 cgccaaggct ttatcgaggg ccgcatttcc gagctggaac acaaactttc cgttgcccac
    16981 atcatcaatc cgaccgaaat ccacgccgaa ggcaaaatcg tgttcggtac gacggttacg
    17041 ctggaagatt tggaaacgga agaacacgtt acctaccaaa ttgtcggcga agacgaagcc
    17101 gacatcaaac agggcaaaat ctatgtcggc tcacccatcg cccgcgcctt aatcggcaag
    17161 gaagaggggg atacggcgga agtccaagcc ccgggcggcg tgcgcgaata cgacattatc
    17221 gaagtccgat atatttgatt cggcttgatt tcgatacacc cgacacacgc aggaaattat
    17281 agtggattaa caaaaatcag gacaaggcga cgaagccgca gacagtacaa atag
//
LOCUS       DAWGNT010000026        17026 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.026, whole genome shotgun sequence.
ACCESSION   DAWGNT010000026 DAWGNT010000000
VERSION     DAWGNT010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 17026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17026
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.026"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..881
                     /gene="tuf"
                     /locus_tag="WHR98_000643"
     CDS             <1..881
                     /gene="tuf"
                     /locus_tag="WHR98_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEZ2307351.1"
                     /translation="ILVCSAADGPMPQTREHILLARQVGVPYIIVFMNKCDMVDDAEL
                     LELVEMEIRDLLSSYDFPGDDCPIVQGSALKALEGDAAYEEKIFELAAALDSYIPTPE
                     RAVDKPFLLPIEDVFSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMF
                     RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRH
                     TPFFANYRPQFYFRTTDVTGAVTLEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIR
                     EGGRTVGAGVVSSVIA"
     gene            888..963
                     /locus_tag="WHR98_000644"
     tRNA            888..963
                     /locus_tag="WHR98_000644"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:921..923,aa:Trp,seq:cca)
     gene            1078..1356
                     /gene="secE"
                     /locus_tag="WHR98_000645"
     CDS             1078..1356
                     /gene="secE"
                     /locus_tag="WHR98_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEZ2307352.1"
                     /translation="MTEHTPEKKNVKVDQLVVQDKESASNSGKEGFFAYFSNSWSEFK
                     KVVWPKREDAVRMTVFVIVFVAVLSIFIYAADTAISWLFFDVLLRREG"
     gene            1358..1894
                     /gene="nusG"
                     /locus_tag="WHR98_000646"
     CDS             1358..1894
                     /gene="nusG"
                     /locus_tag="WHR98_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEZ2307353.1"
                     /translation="MSKKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEK
                     VVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQR
                     EAEIILQQVQTGIEKPKPKVEFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQI
                     FGRETPVELEFSQVEKIN"
     gene            1995..2429
                     /gene="rplK"
                     /locus_tag="WHR98_000647"
     CDS             1995..2429
                     /gene="rplK"
                     /locus_tag="WHR98_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEZ2307354.1"
                     /translation="MAKKIIGYIKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNA
                     ATQGMEPGLPIPVVITAFADKSFTFVMKTPPASILLKKAAGLQKGSSNPLTNKVGKLT
                     RAQLEEIAKTKDPDLTAADLDAAVRTIAGSARSMGLDVEGVV"
     gene            2429..3124
                     /gene="rplA"
                     /locus_tag="WHR98_000648"
     CDS             2429..3124
                     /gene="rplA"
                     /locus_tag="WHR98_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEZ2307355.1"
                     /translation="MAKVSKRLKALRSSVEANKLYAIDEAIALVKKAATAKFDESVDV
                     SFNLGVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQGANAEAAKEAGADIVGFEDLAA
                     EIKAGNLNFDVVIASPDAMRIVGQLGTILGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VQYRTDKAGIVHATIGRASFAEADLKENFDALLDAIVKAKPAAAKGQYLKKVAVSSTM
                     GLGIRVDTSSVNN"
     gene            3354..3854
                     /gene="rplJ"
                     /locus_tag="WHR98_000649"
     CDS             3354..3854
                     /gene="rplJ"
                     /locus_tag="WHR98_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEZ2307356.1"
                     /translation="MSLNIETKKVAVEEISAAIANAQTLVVAEYRGISVSSMTELRAN
                     ARKEGVYLRVLKNTLARRAVQGTSFAELADQMVGPLVYAASEDAVAAAKVLHQFAKKD
                     DKIVVKAGSYNGEVMNAAQVAELASIPSREELLSKLLFVMQAPVSGFARGLAALAEKK
                     AGEEAA"
     gene            3912..4283
                     /gene="rplL"
                     /locus_tag="WHR98_000650"
     CDS             3912..4283
                     /gene="rplL"
                     /locus_tag="WHR98_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEZ2307357.1"
                     /translation="MAITKEDILEAVGSLTVMELNDLVKAFEEKFGVSAAAVAVAGPA
                     GAGAADAEEKTEFDVVLASAGDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVS
                     KAEAEDIQKQLEEAGAKVEIK"
     gene            4474..8652
                     /gene="rpoB"
                     /locus_tag="WHR98_000651"
     CDS             4474..8652
                     /gene="rpoB"
                     /locus_tag="WHR98_000651"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEZ2307358.1"
                     /translation="MSYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENA
                     FDKRTDDGLQAAFNSIFPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRA
                     RIRLVILDKEASKPTVKEVRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVF
                     FEHDKGKTHSSSKLLFSARIIPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALG
                     YNNEQILDIFYDKETFYLSSNGVQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITA
                     KNIRDIANAGLTRLDVEPESLLGKALAADLIDSETGEVLASANDEITEELLAKFDING
                     VKEITTLYINELDQGAYISNTLRTDETAGRQAARVAIYRMMRPGEPPTEEAVEQLFNR
                     LFFSEDSYDLSRVGRMKFNTRTYEQKLSEAQQNSWYGRLLNETFAGAADKGGYVLSVE
                     DIVASIATLVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQ
                     AESENLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLT
                     RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRRVVDG
                     KVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDLVTCREKGETIMATPDRVQYMDV
                     ATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPMVGTGIERSVAVDSA
                     TAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNLVKFTRSNQSTNINQRPAV
                     KAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYEDSILISEKVAADDRYT
                     SIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYIGAEVEAGDVLVGKV
                     TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQVFTREGIQRDKRA
                     QSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLAKGSEITTEYLA
                     GLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQGDELQPGVQ
                     KMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPS
                     RMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNKLYNGSGKKEDLDALTD
                     EEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQITL
                     YDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRF
                     GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLVK
                     EIRSLGLDIDLERY"
     gene            8809..12984
                     /gene="rpoC"
                     /locus_tag="WHR98_000652"
     CDS             8809..12984
                     /gene="rpoC"
                     /locus_tag="WHR98_000652"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEZ2307359.1"
                     /translation="MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPE
                     TINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRE
                     RMGHIELAAPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQ
                     LLTEDDYYNKLDEYGDDFDAKMGAEGIRELLRTLNVAGEIEILRQELESTGSDTKIKK
                     IAKRLKVLEAFHRSGMKLEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN
                     RNNRLKRLLELHAPDIIVRNEKRMLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIK
                     GKGGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIFHKLEKQGL
                     ASTVKAAKKLVEQEVPEVWDILEEVIREHPIMLNRAPTLHRLGIQAFEPILIEGKAIQ
                     LHPLVCAAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLSPANGEPIIVPSQDI
                     VLGLYYMTRDRINAKGEGSLFADVKEVHRAYHTKQVELGTKITVRLREWVKNEAGEFE
                     PVVNRYETTVGRALLSEILPKGLPFEYVNKALKKKEISKLINASFRLCGLRDTVIFAD
                     HLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEANAEVKEIEDQYRQGLVTNGERYN
                     KVVDIWGRAGDKIAKAMMDNLSKQKVIDRAGNEVDQESFNSIYMMADSGARGSAAQIK
                     QLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHGARKGLADTALKTANSGYL
                     TRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDRILGRVTASDVVDPSSG
                     ETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHCYGRDLARGKLVNAG
                     EAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTARFSSQMRYVANN
                     KGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTLATWDPHTRPM
                     ITEHAGMVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSSSASKLLRPTVKLLDEN
                     GVEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVA
                     ELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIVTDVDGVAYETLISKEKQILVHDG
                     QVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQ
                     MLRRVNIADAGETGFITGEQVERGDVMAANEKALEEGKEPARYENVLLGITKASLSTD
                     SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQE
                     VEQETAETQVTDE"
     gene            13276..13533
                     /locus_tag="WHR98_000653"
     CDS             13276..13533
                     /locus_tag="WHR98_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307360.1"
                     /translation="MKPRNLFFAGCLLTSATFAEDIGVPVELINVGNRIAMPSEGESL
                     ALLPFAEDVPPVRDAMPSEVPKSAAGGDVRGDRIGMPINIG"
     gene            13530..13679
                     /locus_tag="WHR98_000654"
     CDS             13530..13679
                     /locus_tag="WHR98_000654"
                     /inference="COORDINATES: protein motif:HMM:NF016462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HEZ2307361.1"
                     /translation="MSAALWHKKLSWKGFTPQINFRYNKINSNMPAFYSRSGKERFVS
                     IEKTY"
     gene            13858..14229
                     /gene="rpsL"
                     /locus_tag="WHR98_000655"
     CDS             13858..14229
                     /gene="rpsL"
                     /locus_tag="WHR98_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEZ2307362.1"
                     /translation="MPTINQLVRKGRQKPVYVNKVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCKVRLTNGFEVISYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSL
                     DTAGVKDRKQARSKYGAKRPK"
     gene            14347..14817
                     /gene="rpsG"
                     /locus_tag="WHR98_000656"
     CDS             14347..14817
                     /gene="rpsG"
                     /locus_tag="WHR98_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008955889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEZ2307363.1"
                     /translation="MPRRREVPKRDVLPDPKFGSVELTKFMNVLMIDGKKSVAERIVY
                     GALEQIEKKTGKVAIEVFNEAIANAKPIVEVKSRRVGGANYQVPVEVRPSRRLALAMR
                     WVRDAARKRGEKSMDLRLAGELIDASEGRGGALKKREEVHRMAEANKAFSHFRF"
     gene            14836..16941
                     /gene="fusA"
                     /locus_tag="WHR98_000657"
     CDS             14836..16941
                     /gene="fusA"
                     /locus_tag="WHR98_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEZ2307364.1"
                     /translation="MARKTPISLYRNIGISAHIDAGKTTTTERILFYTGLTHKLGEVH
                     DGAATTDYMEQEQERGITITSAAVTSYWSGMAKQFPEHRFNIIDTPGHVDFTVEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYQVPRLAFVNKMDRQGANFFRVVEQMKT
                     RLRANPVPIVIPVGAEDNFSGVVDLLKMKSIIWNEADKGTTFTYGDIPVELVETAEEW
                     RQNMIEAAAEASEELMDKYLGGDELTEEEIVGALRQRTLAGEIQPMLCGSAFKNKGVQ
                     RMLDAVVELLPAPTDIPPVQGVNPNTEEADSRQASDEEKFSALAFKMLNDKYVGQLTF
                     IRVYSGVVKSGDTVLNSVKGTRERIGRLVQMTAADRTEIEEVRAGDIAAAIGLKDVTT
                     GETLCAESAPIILERMEFPEPVIHIAVEPKTKADQEKMGIALNRLAKEDPSFRVRTDE
                     ESGQTIISGMGELHLEIIVDRMKREFGVEANIGAPQVAYRETIRKEVEAEYKHAKQSG
                     GKGQYGHVVIKMEPMEPGGAGYEFIDEIKGGVIPREFIPSVDKGIRDTLPNGIVAGYP
                     VVDVRVRLIFGSSHDVDSSQLAFELAASQAFKEGMRKANPALLEPIMAVEVETPEEYM
                     GDVMGDLNRRRGVVLGMDDDGIGGKKVRAEVPLAEMFGYSTDLRSATQGRATYSMEFK
                     KYSEAPAHIAAAVTEARKG"
BASE COUNT         4515 a         3828 c         4418 g         4265 t
ORIGIN      
        1 caatcctggt atgttccgca gccgacggcc ctatgccgca aacccgcgaa cacatcctgc
       61 tggcccgtca agtaggcgta ccttacatca tcgtgttcat gaacaaatgc gacatggtcg
      121 acgatgccga gctgttggaa ctggttgaaa tggaaatccg cgacctgctg tccagctacg
      181 acttccccgg cgacgactgc ccgattgtac aaggttctgc actgaaagcc ttggaaggcg
      241 atgccgctta tgaagagaaa atcttcgaac tggctgccgc attggacagc tacatcccga
      301 ctcccgagcg tgccgtggac aaaccgttcc tgctgcctat cgaagacgtg ttctccattt
      361 ccggccgagg tacagtagta accggccgtg tagagcgcgg tatcatccac gttggtgacg
      421 agatcgaaat cgtcggtctg aaagaaaccc aaaaaaccac ctgtaccggt gttgaaatgt
      481 tccgcaaact gctggacgaa ggtcaggcgg gcgacaacgt aggcgtattg ctgcgcggta
      541 ccaaacgtga agacgtggaa cgcggtcagg tattggccaa accgggtact atcactcctc
      601 acaccaaatt caaagcagaa gtgtacgtac tgagcaaaga agagggcggc cgccatactc
      661 cgttcttcgc caactaccgt ccgcaattct acttccgtac caccgacgta accggcgcgg
      721 ttactttgga agaaggtgtg gaaatggtaa tgccgggtga gaacgtaacc attaccgtag
      781 aactgattgc gcctatcgct atggaagaag gcctgcgctt tgcgattcgc gaaggcggcc
      841 gtaccgtggg tgccggcgtg gtttcttctg ttatcgctta agtttagagg ccaatagctc
      901 aattggtaga gtatcggtct ccaaaaccga gggttggggg ttcgagaccc tcttggcctg
      961 ccaaataaaa aattaaccgg ccttgtgtcg gttaattttt ttgtatttgt tatttagtaa
     1021 actctcttgc catttacatg gattgagaat agacagatgc tatgatggat aaataatatg
     1081 acagaacata cgcctgaaaa aaagaacgtt aaagtggatc aactggttgt tcaagataaa
     1141 gaatctgcat ctaattccgg taaggaaggg ttttttgcat atttctcaaa ttcttggtcc
     1201 gaattcaaaa aggtggtttg gcctaagcgt gaagatgctg tcagaatgac tgtatttgtt
     1261 atagtgtttg ttgctgtgct ttctatattt atctatgcgg cagatacagc aatttcgtgg
     1321 ttattttttg atgtattgct gagaagggaa ggttgagatg tcgaaaaaat ggtatgttgt
     1381 acaggcgtat tcggggtttg agaagaatgt ccaacgaata ttggaagagc gcattgcccg
     1441 tgaggagatg ggagattatt tcggacaaat tctggtgcct gtagagaaag ttgttgatat
     1501 ccgcaatggt cgtaagacta ttagtgaaag aaagtcatat cctggttatg tgctagttga
     1561 gatggaaatg acagatgact cttggcatct tgtaaaaagc accccccgtg tttccggttt
     1621 tattggaggg agggctaata gacctacgcc gattagtcag agagaggctg aaattatttt
     1681 acagcaggtt cagaccggca tagagaagcc gaaaccaaaa gttgaatttg aggtcggtca
     1741 acaggttcgt gtaaatgaag ggccgtttgc ggattttaac ggggtggttg aggaggtcaa
     1801 ttatgaacgg aataagttac gcgtgtctgt tcagatattt ggtagagaaa cacccgttga
     1861 gctggagttc agccaggttg aaaagattaa ctgattttta tacttgaaaa aaaagcaata
     1921 agaggataga atcaaaaatt aacttgggga gcggaaatgg ttccgcgtct tacccgtttt
     1981 taggagttcg ttaagtggca aagaaaatta tcggctatat taaactgcaa attcctgcag
     2041 gtaaagccaa tccatctcct ccggttggtc ctgctttggg tcagcgcggt ttgaatatta
     2101 tggaattttg taaggcattt aatgctgcaa cccaaggtat ggagcctggc ttaccgattc
     2161 cggttgtgat tactgcattt gcagataaat cattcacatt tgtgatgaaa accccgccag
     2221 cttctatctt gttgaaaaag gctgccggtt tgcaaaaagg tagttctaat cctctgacca
     2281 acaaagtggg taaattgacc cgtgcccagt tggaagaaat tgctaaaact aaagatcctg
     2341 atttgactgc tgctgacttg gatgcggctg tccgtactat agcaggttct gctcgctcaa
     2401 tgggcttgga tgtggagggt gttgtataat ggctaaagta tctaaacgct tgaaagctct
     2461 tcgctcttct gtggaagcca ataaattata tgcaattgat gaagcaattg ctttggtaaa
     2521 aaaagcagcg actgctaaat ttgacgagtc tgttgacgta tctttcaact tgggcgttga
     2581 tccgcgtaaa tctgaccaag ttatccgtgg ttcggtcgtt ctgcctaaag gcaccggtaa
     2641 gataacccgt gtggctgtat ttactcaagg tgcaaatgca gaagctgcta aagaagctgg
     2701 tgcagatatc gtcggtttcg aagatttggc tgctgaaatc aaagcaggca atctgaactt
     2761 tgacgttgtt attgcttctc ccgatgcaat gcgtattgtt ggtcaattgg gtaccatctt
     2821 gggtcctcgt ggtctgatgc caaaccctaa agtaggtacg gttaccccta atgttgccga
     2881 agcagtaaaa aatgcaaaag caggtcaagt gcagtaccgt accgacaagg caggtattgt
     2941 tcatgcaacg attggtcgtg cttcattcgc tgaagctgat ttgaaagaga actttgatgc
     3001 gttgctggat gctatcgtta aagccaagcc tgctgccgct aaaggtcagt atctgaaaaa
     3061 agttgctgtg tctagcacca tgggtttggg tattcgcgtt gatacatcaa gcgtaaataa
     3121 ctaatcttaa ggaattttca agcagtttgg ttttctgggc tgcttgaatt tgggctactt
     3181 aaaattaagt agatgtccaa gaccgtaggg atcgtaagat ttaatcgtaa ctgccctacg
     3241 cagacggtag tcctgaaaca cattgcaaga ttgcttgtaa gatgtctttt taggttaccg
     3301 cgctggtggg atatcgtttt ggtatcctgt ttataaacag tgggaggtag accttgagtc
     3361 tcaatattga aaccaagaaa gtggcggtcg aggaaattag cgcggcaatt gctaatgctc
     3421 aaaccctcgt agtcgctgaa tatcgcggta tcagtgtttc cagtatgact gagcttcgtg
     3481 cgaatgcacg taaagaaggc gtttatttgc gcgttctgaa aaatactttg gctcgtcgtg
     3541 cagtgcaagg tacttcattt gcagaattgg ccgatcaaat ggttggtccg ttggtttacg
     3601 ctgcttctga agatgctgtt gctgctgcta aagtgttgca ccaattcgcg aaaaaagatg
     3661 acaaaattgt cgttaaagcc ggttcttaca atggcgaagt aatgaatgct gctcaggttg
     3721 ctgagttggc ttctattccg agccgcgaag agctgttgtc caaactgttg ttcgttatgc
     3781 aagctcctgt atcgggcttt gcgcgcggtt tggctgcttt ggcagagaaa aaagccggcg
     3841 aagaagccgc ttaatcgatt ttgtttctgt taatcaatta ttttttaata caatatttgg
     3901 agtaaaatag catggctatt actaaagaag acattttgga agcagttggt tctttgaccg
     3961 taatggaatt gaacgacttg gttaaagctt ttgaagaaaa attcggtgtt tctgctgctg
     4021 ctgttgcagt tgcaggtcct gctggtgccg gtgctgccga tgctgaagaa aaaaccgaat
     4081 ttgatgtcgt tttggcttct gccggcgatc aaaaagtcgg cgtgattaaa gttgtccgtg
     4141 caattaccgg tttgggtctg aaagaagcta aagacatcgt tgacggtgca cctaaaacca
     4201 ttaaagaggg tgtttctaaa gctgaagccg aagacatcca aaaacaactg gaagaagccg
     4261 gcgctaaagt cgaaatcaaa taatttgatg cttcttatga aggctggcag ttttctgcca
     4321 gccttatttt gcttcttaaa ataaacatca agtattgttt acatttattt gcatagtttt
     4381 tatcaaatca ttgcaaataa atgtaaacat cagattgatg cgtgccgttg ctttcaaacg
     4441 gcctattatt gaaaattact tttcggagtg tatatgagct attcgtttac cgagaaaaaa
     4501 cgtatccgta agagttttgc aaagcgggaa aatgttttgg aagttccttt cttgctggca
     4561 acccaaattg attcttatgc gaagtttttg cagctggaaa atgcttttga caaacgtacc
     4621 gatgacggtc tgcaggcggc atttaattct attttcccga ttgtgagcca taacggttat
     4681 gcgcgattgg agtttgtgca ttacacattg ggcgagcctt tgttcgatat tcccgaatgt
     4741 cagttgcgcg gaatcactta tgcagccccc ttgcgcgcgc gtatccgttt ggtgattttg
     4801 gataaggaag catctaaacc gacggtaaaa gaagttcgtg aaaacgaagt gtatatgggc
     4861 gaaattccgt tgatgacccc gagcggttct tttgtgatta acggcacaga gcgtgtgatt
     4921 gtctcccagt tgcaccgttc gcccggcgta ttcttcgagc atgacaaagg taagacgcac
     4981 tcttccagca aattgttatt ctccgcccgc atcattccct accgtggttc atggttggat
     5041 tttgaatttg atccgaaaga tttgctgtat ttccgtatcg accgccgccg taaaatgccg
     5101 gtaacgattt tgttgaaagc tttgggctac aacaatgagc aaatcttgga tattttctac
     5161 gacaaagaaa cgttctattt gtcttcaaac ggtgttcaaa ccgatttggt cgcaggccgt
     5221 ctgaaaggcg aaactgccaa ggtcgatatc ttggataaag aaggcaatgt attggttgcc
     5281 aaaggtaagc gcattactgc gaaaaatatc cgtgatattg ccaatgcagg cctgacccgt
     5341 ttggatgtag aaccggaaag cctgctgggc aaagcattgg ctgccgacct gattgattcg
     5401 gaaaccggcg aggtattggc ttctgccaat gatgaaatta cagaagagtt gttggccaaa
     5461 tttgatatca acggcgtaaa agaaattacg accctttata tcaatgagct ggatcagggt
     5521 gcttatatct ccaatacctt gcgtacggat gagactgccg gccggcaggc ggctcgtgtt
     5581 gcgatttacc gtatgatgcg tccgggcgaa ccgcccactg aagaggcggt cgagcaattg
     5641 tttaaccgct tgttcttcag tgaagacagc tacgatttgt cccgcgtagg ccgtatgaaa
     5701 tttaatacgc gcacatacga acaaaaactg tccgaagccc aacaaaactc ttggtacggc
     5761 cgcctgctga acgaaacgtt tgccggtgct gccgacaaag gcggttatgt cctgagcgtc
     5821 gaagatattg tcgcctcgat tgcgactttg gtcgagttgc gtaacggcca tggcgaagtg
     5881 gacgatatcg atcacttggg caaccgccga gtacgttcgg taggcgagct gactgaaaac
     5941 caattccgca gcggtttggc ccgtgtggaa cgtgccgtaa aagaacgttt gaatcaggcg
     6001 gaatcagaaa acttgatgcc gcacgatttg attaatgcaa aacctgtttc tgccgctatt
     6061 aaagaattct tcggctccag ccaattgagt cagtttatgg atcagaccaa ccccttgtct
     6121 gaagtaaccc ataaacgccg tgtatccgca ttgggtccgg gcggcttgac ccgcgaacgt
     6181 gcaggatttg aggtgcggga cgtgcatccg acccactacg gtcgcgtatg tccgattgaa
     6241 acgcctgaag gtccgaacat cggtttgatc aactcactgt ctgtttatgc gcgtaccaat
     6301 gattatggtt tcttggaaac cccttaccgc cgtgttgtcg atggtaaagt aaccgaagaa
     6361 atcgattact tgtctgccat cgaagaaggc cgctatgtga ttgcacaggc gaatgccgat
     6421 ttggattcag atggcaatct gattggcgat ttggttacct gtcgtgaaaa aggcgaaacc
     6481 attatggcaa cgcccgaccg cgtccaatat atggacgtgg caaccggcca ggtggtatcc
     6541 gttgcggcat ccctgattcc gttcttggaa catgatgacg cgaaccgcgc attgatgggt
     6601 gccaacatgc aacgtcaggc cgtaccgtgc ctgcgtcctg aaaaaccgat ggtcggtacc
     6661 ggtatcgagc gttccgttgc cgttgactct gctactgcaa tcgttgcccg ccgaggcggc
     6721 gtggtcgagt atgtcgatgc caaccgcgtt gtgatccgtg tccatgacga cgaagcgact
     6781 gccggcgaag tgggtgtcga tatttacaac ttggttaaat ttacccgttc caatcaatct
     6841 actaacatca accaacgtcc ggctgtcaaa gcaggcgatg ttttgcaacg cggcgatttg
     6901 gtggccgatg gcgcgtccac cgatttgggc gaattggctt tgggtcaaaa tatgaccatc
     6961 gccttcatgc cgtggaacgg ttacaactac gaagactcga ttctgatttc cgaaaaagtg
     7021 gctgcggacg accgctatac ttcgattcac attgaggaat tgaatgtcgt tgcccgcgat
     7081 accaagctgg gtgcggaaga cattacccgc gatattccga acttgtccga gcgtatgcaa
     7141 aaccgtttgg acgaatccgg tatcgtttac atcggtgcgg aagtagaagc cggcgatgtg
     7201 ttggtaggca aggtaacgcc taaaggcgaa acccagctga cgccggaaga aaaactgctg
     7261 cgcgccatct tcggtgaaaa agcatctgac gtaaaagata cttcattgcg tatgcctacc
     7321 ggcatgagcg gtaccgttat cgacgttcaa gtcttcactc gtgaaggtat tcaacgcgac
     7381 aaacgtgctc aatccattat cgattccgag ttgaaacgct accgtttgga tttgaacgac
     7441 caattgcgta ttttcgacaa cgacgcattc gaccgtatcg agcgtatgat tgtcggtcag
     7501 aaagccaacg gcggcccgat gaagctggcc aaaggcagtg aaatcacgac cgaatatctg
     7561 gcgggtctgc cgagcaggca cgattggttc gatatccgtc tgaccgatga agatttggcc
     7621 aagcagttgg aactgattaa agtgagcctg caacaaaaac gcgaagaagc ggacgagtta
     7681 tacgaaatca agaagaaaaa actgacccaa ggcgacgaat tgcaacccgg cgtacaaaaa
     7741 atggtgaaag tttttatcgc catcaaacgc cgtctgcaag ccggcgacaa aatggcgggc
     7801 cgccacggta acaaaggcgt ggtatcgcgc attctgccag tggaagacat gccttacatg
     7861 gcggacggcc gtccggtaga catcgtactg aacccattgg gcgtaccttc ccgtatgaac
     7921 atcggtcaga ttttggaagt tcacttgggt tgggcagcaa aaggtatcgg cgagcgtatc
     7981 gaccgtatgc tgaaagagca acgcaaagca ggcgagttgc gcgagttctt gaacaaactc
     8041 tacaacggca gcggcaagaa agaagatttg gatgccctga ctgatgaaga aatcatcgaa
     8101 ctggcctcca acctgcgtaa aggtgcatct ttcgcctctc ctgtattcga cggtgcgaaa
     8161 gagtctgaaa tccgcgaaat gttgaacttg gcttatccga gcgacgatcc tgaggttgaa
     8221 aaactgggct tcaacgacag taaaacccaa atcacgctgt atgacggccg ttcaggcgaa
     8281 gcatttgacc gcaaggttac agtaggtgtg atgcactatc tgaaactgca ccacttggtt
     8341 gacgaaaaaa tgcacgcgcg ttctaccggt ccgtacagtc tggttaccca gcagcctttg
     8401 ggcggtaaag cccagttcgg cggccaacgt ttcggtgaga tggaggtttg ggcactggaa
     8461 gcatacggcg cagcctacac gctgcaagag atgctgactg tgaagtctga cgacgtgaac
     8521 ggccgtacca aaatgtacga aaacatcgtc aaaggcgaac acaaaatcga tgccggtatg
     8581 cccgagtcct tcaacgtatt ggtcaaagag attcgctcac tgggcttgga tatcgatttg
     8641 gaacgttact aaacaaaagt tttcagacgg cctttcaggg tcgtctgaaa aagtggtttc
     8701 agaataagaa tgaagcaatc ggcatttagg ccgtctgaaa tcaaaagtac cgtttcccca
     8761 tatcgaaaat ccgccatgcg gtaaaaatac ttccttcaag gagcaaaaat gaatttgttg
     8821 aacttattta atccgttgca aactgccggc atggaagaag agtttgatgc cattaaaatc
     8881 ggtattgcct ctcccgaaac catccgctca tggtcttatg gcgaagttaa aaaacctgaa
     8941 accatcaact accgtacgtt caaacctgag cgtgacggtt tgttctgtgc caaaatcttt
     9001 ggcccggtca aagactacga atgcttgtgc ggaaaataca aacgcttgaa atttaaaggc
     9061 gtaacgtgtg aaaaatgcgg cgtggaagta accctgtcca aagtgcgccg cgaacgcatg
     9121 ggccatatcg aattggctgc gcccgtcgca cacatttggt tcttaaaatc cctgccttcc
     9181 cgcttgggta tggtactgga catgactttg cgcgatatcg aacgcgtatt gtactttgaa
     9241 gcatttgtgg taaccgatcc cggtatgact ccgctgcaac gccgccaatt gctgactgaa
     9301 gacgattact acaacaagct ggacgaatac ggcgacgact tcgatgccaa aatgggtgcg
     9361 gaaggtatcc gcgaattgct gcgtaccctg aatgtagcgg gcgaaatcga aatcctgcgt
     9421 caagagctgg aatcgaccgg ttccgacacc aaaatcaaaa aaatcgccaa acgtttgaaa
     9481 gtattggaag ccttccatcg ttccggtatg aaattggaat ggatgattat ggatgtgctg
     9541 ccggtattac ctcccgattt gcgtcctttg gttccgttgg acggcggccg ttttgccact
     9601 tccgatttga acgatttgta ccgccgcgtc atcaaccgca acaaccgtct gaaacgtctg
     9661 ttggaactgc atgcgcccga catcatcgtc cgcaacgaaa aacgtatgtt gcaagaagca
     9721 gttgactcgc tgttggataa cggccgtcgc ggtaaagcca tgaccggcgc caacaaacgc
     9781 ccgctgaaat cattggcaga catgattaaa ggtaaaggcg gtcgcttccg tcaaaacctg
     9841 ttgggcaaac gtgtggacta ctccggccgt tccgtgatta ccgtaggccc atacctgcgt
     9901 ctgcaccaat gcggtctgcc gaaaaaaatg gctttggaac tgttcaaacc gttcattttc
     9961 cacaaattgg aaaaacaagg tctggcttcc accgttaaag cagcgaaaaa attggtagag
    10021 caagaagtac cggaagtatg ggacatcttg gaagaagtca tccgcgaaca tccgattatg
    10081 ctgaaccgtg cgccgaccct gcaccgtttg ggtattcaag cgtttgaacc tatcttgatt
    10141 gaaggtaaag cgattcagtt gcacccattg gtgtgtgccg cgttcaacgc cgactttgac
    10201 ggcgaccaaa tggcggtaca cgttccattg agcttggaag cacaaatgga agcacgcacg
    10261 ctgatgctgg cttcaaacaa cgtattgtct cctgccaacg gcgaaccgat tattgtacct
    10321 tcccaagata tcgtattggg tctgtactac atgacccgcg accgtatcaa tgccaaaggc
    10381 gaaggcagcc tgtttgccga tgtgaaagaa gtgcatcgcg cataccatac caaacaggtc
    10441 gagctgggta caaaaatcac cgtacgtctg cgcgaatggg tgaaaaacga agcaggtgag
    10501 tttgagcctg tcgttaaccg ttacgaaaca accgtcggcc gtgcattgtt gagcgaaatc
    10561 ctgccgaaag gcctgccgtt tgaatatgtc aacaaagcgt tgaagaaaaa agaaatttct
    10621 aaactgatta acgcatcgtt ccgcctgtgc ggcttgcgcg atacggttat ctttgctgac
    10681 cacctgatgt acaccggttt cggatttgcg gcaaaaggcg gtatttccat tgccgttgac
    10741 gatatggaaa ttccaaaaga aaaagcggcc ttgctggctg aagccaatgc cgaggttaaa
    10801 gaaatcgaag accaataccg tcaaggtttg gttaccaacg gcgaacgcta caacaaggtg
    10861 gtcgatattt ggggtcgtgc cggcgataaa atcgctaagg cgatgatgga caacctgtcc
    10921 aaacaaaaag ttatcgaccg tgccggcaac gaagtcgatc aagagtcatt caactccatc
    10981 tatatgatgg cagactccgg tgcccgtggt tctgcggctc agattaaaca gttgtcaggt
    11041 atgcgcggtt tgatggcgaa acctgacggc tcgattattg aaacgccgat tacctcaaac
    11101 ttccgcgaag gtctgaccgt attgcaatac tttattgcga cccacggtgc gcgtaagggt
    11161 ttggcggata ccgcattgaa aaccgcgaac tccggttacc tgacccgtcg tctggtagac
    11221 gtaactcaag atttggtcgt tgttgaagac gattgcggta cttcagacgg ctttgttatg
    11281 aaggcagtgg tacaaggcgg tgatgtgatt gaagcattgc gcgatcgtat tttgggccgt
    11341 gttactgcgt ctgacgttgt cgatccgtca agcggcgaga ccttggttga agccggtacg
    11401 ttgttgactg aaaaactggt ggatatgatt gaccaatccg gtgtcgatga agtcaaagtc
    11461 cgtacgccga ttacttgtaa aacccgccac ggtttgtgcg cgcactgtta tggtcgcgac
    11521 ttggcacgtg gtaagctggt caatgccggt gaggcagttg gtgtgattgc cgcccaatca
    11581 atcggcgaac cgggtaccca gctgactatg cgtacgttcc acatcggtgg tgcggcatcc
    11641 cgtgcggcag cagccagcca agtggaagcc aaatccaacg gtacggcacg attcagcagc
    11701 caaatgcgtt atgttgccaa caataaaggc gagttggttg tcatcggccg ttcttgtgaa
    11761 gtcgtgattc acgacgatat cggccgtgaa cgcgaacgcc acaaagtacc ttacggtgcc
    11821 atcctgctgg tacaagacgg tatggccatt aaagccggtc aaaccttggc aacctgggat
    11881 ccgcataccc gtccgatgat caccgaacat gcaggtatgg tgaaatttga gaacgtggaa
    11941 gagggtgtta ccgttgcgaa acaaactgac gatgtaaccg gtttgtccac tttggtggtg
    12001 attgacggta aacgccgttc cagcagcgcg tccaaactgc tgcgtccgac tgtaaaattg
    12061 ttggatgaaa acggcgtgga aatctgtatt cccggtacgt ccactccggt ttcgatggca
    12121 ttccccgttg gtgcggtgat taccgtacgc gaaggtcagg aaatcggtaa aggcgacgta
    12181 ttggcgcgta tcccgcaagc ctcttccaaa acccgcgaca ttaccggtgg tctgccgcgc
    12241 gttgccgaat tgtttgaagc acgcgtgccg aaagatgccg gtatgttggc ggaaattacc
    12301 ggtaccgttt ccttcggcaa agagaccaaa ggcaagcaac gtctgattgt tactgacgtg
    12361 gacggtgtag catacgagac cttgatttcc aaagagaaac aaattctggt acacgacggt
    12421 caagtggtaa accgcggtga aaccatcgtg gacggagctg ttgatccgca tgatattctg
    12481 cgtttgcaag gtatcgaagc actggcacgc tacattgtcc aagaggtgca agaggtttac
    12541 cgtctgcaag gtgtgaagat ttctgataaa cacatcgaag tcatcatccg tcaaatgttg
    12601 cgccgtgtga acattgcgga tgccggcgaa accgggttca ttaccggaga gcaggtcgaa
    12661 cgcggcgatg tgatggcggc caatgaaaaa gctttggaag aaggcaaaga gccggcacgt
    12721 tacgaaaacg tattgctggg tattaccaaa gcctccctgt ccaccgacag tttcatttct
    12781 gccgcatcgt tccaagaaac gacccgtgtt ctgaccgaag ccgcgattat gggcaaacaa
    12841 gacgaactgc gcggtttaaa agagaacgtc atcgtcggcc gcctgattcc tgccggtacc
    12901 ggtttgactt accaccgcag ccgtcatcaa caatggcaag aggtggaaca ggagactgct
    12961 gaaacccaag taacggatga ataatctttg gtgcgtttat tcaatacaaa accgcaagct
    13021 ttaagcttgc ggtttttctt tgtctgatta aggcaaaaac aagcgttttc gtcattttga
    13081 ggcgtgtgga ttattcctta ggtattttcg ggccggagac caacgaggtg gcgggtgtcg
    13141 tcggtacgtc cggagaccaa aataactttg ctagggatgt tggtttcggc ggtcaaaaaa
    13201 agtagcgtct taatgttttc catttaaaca aatgtcgtct gaaacttcag acggcatttc
    13261 ctttaaaaaa taaatatgaa acccagaaat ctcttttttg caggctgcct gctgacttcg
    13321 gcgacgtttg ccgaggatat cggcgtacct gtcgaactga ttaacgtcgg taatcggatt
    13381 gcgatgccgt ctgaagggga aagcctcgcc ctcctgccgt ttgccgagga tgtaccgccg
    13441 gttcgcgatg caatgccgtc tgaagttcct aaaagcgcgg caggcggcga tgttcggggt
    13501 gaccggatag gaatgccgat taacatcgga tgagcgcggc tttatggcat aaaaaactgt
    13561 cgtggaaagg atttacaccc caaataaatt tccgttacaa caagatcaac agcaatatgc
    13621 ccgcctttta ttcgcgcagc ggcaaggaac ggtttgtcag tatagaaaaa acgtattgac
    13681 agtattttct tcagtcgtcc gactgattgt gagggatgtc ggtaaatatt tatcggcaaa
    13741 caagaaaatc atctttcttc ttgtcgttat gcttgactgt atacttgcaa taaaaatata
    13801 attccactct tgccgacatg gtgtcggcaa gtatttaact caacaggacg agaaaatatg
    13861 ccaactatca accaattggt acgcaaaggc cgtcaaaagc ccgtgtacgt aaacaaagtg
    13921 cccgcactgg aagcctgccc gcaaaaacgc ggcgtgtgca cccgtgtata cacgactacc
    13981 cctaaaaaac ctaactctgc attgcgtaaa gtatgtaaag tccgcctgac caacggtttt
    14041 gaagtcattt catacatcgg cggcgaaggt cacaacctgc aagagcacag tgtcgtattg
    14101 attcgcggcg gtcgtgtaaa agacttgcca ggtgtgcgtt accacactgt acgcggttct
    14161 ttggatactg caggcgttaa agaccgtaaa caagcccgtt ccaaatacgg tgctaagcgt
    14221 cctaaataat tactgggact taaataggca cgtcggccgc ctaagctgaa caacggccga
    14281 gtaagtgaat actcaattgg gtattcatgg gaatagaccc gactgaatag attaaaggaa
    14341 attaaaatgc caagacgtag agaagtcccc aagcgcgacg tactgccaga tcctaaattc
    14401 ggcagcgtcg agttgaccaa attcatgaac gtattgatga ttgacggtaa aaaatccgtt
    14461 gccgagcgta tcgtttacgg tgcgttggaa cagattgaga aaaaaaccgg caaagtagca
    14521 atcgaagtat ttaacgaagc cattgcaaac gccaaaccta tcgtggaagt gaaaagccgc
    14581 cgtgtaggtg gtgcaaacta ccaagttcct gttgaagttc gtccttcacg ccgtttggct
    14641 ttggcaatgc gctgggttcg cgatgcggcc cgcaaacgtg gtgagaaatc catggacctg
    14701 cgtttggcag gcgaattgat tgatgcgtcc gaaggccgtg gcggtgcgtt gaaaaaacgt
    14761 gaagaagtac accgtatggc tgaagccaac aaagcattct ctcacttccg tttctaattt
    14821 tgaaaggcta ataaaatggc tcgtaagacc ccgatcagcc tgtaccgtaa catcggtatt
    14881 tccgcccata tcgatgcggg taaaaccacg acgacagaac gtattttgtt ctataccggt
    14941 ttgacccaca agctgggcga agtgcatgac ggtgcggcta ctaccgacta catggaacaa
    15001 gagcaagagc gcggtattac cattacctcc gctgccgtta cttcctactg gtccggtatg
    15061 gcgaaacaat tccccgagca ccgcttcaac atcatcgaca ccccgggaca cgttgacttt
    15121 accgtagagg tagagcgttc tatgcgtgta ttggacggcg cggtaatggt ttactgcgcg
    15181 gtgggcggtg ttcaacccca atctgaaacc gtatggcggc aagccaacaa ataccaagtg
    15241 ccgcgcttgg cgtttgtcaa taaaatggac cgtcagggtg ccaacttctt ccgcgttgtc
    15301 gagcaaatga aaacccgttt gcgcgcaaac cctgtaccta tcgtcattcc ggttggtgcg
    15361 gaagacaact tcagcggtgt ggttgatttg ttgaaaatga aatccatcat ttggaatgaa
    15421 gccgataaag gtacaacctt tacctatggc gatattcctg tcgaattggt cgaaactgcc
    15481 gaagaatggc gtcaaaatat gattgaagcc gcagccgaag ccagcgaaga actgatggac
    15541 aaatacttag gcggcgacga gctgaccgaa gaagaaatcg taggcgcgtt gcgtcaacgt
    15601 actttggcag gcgaaattca gcctatgctg tgtggttctg catttaaaaa caaaggtgtt
    15661 caacgtatgt tggacgcagt tgtagaattg ctgccagctc ctaccgatat tcctccggtt
    15721 caaggtgtca acccgaatac cgaggaagcc gacagccgtc aagccagcga tgaagagaaa
    15781 ttctctgcat tggcgttcaa aatgttgaac gacaaatacg tcggtcagct gacctttatc
    15841 cgcgtttact caggcgtagt aaaatccggc gataccgtat tgaactccgt aaaaggcact
    15901 cgcgaacgta tcggtcgttt ggtacaaatg actgccgcag accgtactga aatcgaagaa
    15961 gtacgcgccg gcgacatcgc agccgctatt ggtctgaaag acgttactac cggtgaaacc
    16021 ctgtgtgcgg aaagcgcgcc gattatcttg gaacgtatgg aattccccga gccggtaatc
    16081 catattgccg ttgagccgaa aaccaaagcc gaccaagaga aaatgggtat cgccctgaac
    16141 cgcttggcta aagaagaccc ttctttccgt gtccgtacag acgaagaatc cggtcaaacc
    16201 attatttccg gtatgggtga gctgcacttg gaaattattg ttgaccgtat gaaacgcgaa
    16261 ttcggtgtgg aagcgaatat cggtgcgcct caagtggctt accgcgaaac catccgtaaa
    16321 gaagttgaag ccgaatacaa acacgctaaa caatccggtg gtaaaggtca atacggtcac
    16381 gttgtgatta aaatggaacc tatggaacca ggtggtgcgg gttacgaatt tatcgatgaa
    16441 attaaaggtg gtgtgattcc tcgcgaattt attccgtctg tcgataaagg tattcgcgat
    16501 actttgccta acggtatcgt tgccggttac ccagttgttg acgttcgtgt acgtttgatt
    16561 ttcggttctt cgcatgatgt tgactcttca caactggcct tcgaattggc agcttctcaa
    16621 gcctttaaag aaggtatgcg taaagccaat ccagctctgt tggaaccaat catggcagtt
    16681 gaggtggaaa cacctgaaga atacatgggt gacgtaatgg gcgacttgaa ccgccgtcgc
    16741 ggtgttgtat tgggtatgga tgatgacggt atcggcggta aaaaagtccg tgccgaagta
    16801 cctttggcag aaatgttcgg ttactcgacc gacctgcgtt ctgcaaccca aggccgcgct
    16861 acttactcta tggagttcaa gaaatattct gaagctcctg cccacatagc tgctgctgta
    16921 actgaagccc gtaaaggcta atcaggcaaa taggccgtct gaaaggctga aatgattttt
    16981 cagacggcat tgttctttaa tcgatcttta atgtaaagga attagc
//
LOCUS       DAWGNT010000027        16678 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.027, whole genome shotgun sequence.
ACCESSION   DAWGNT010000027 DAWGNT010000000
VERSION     DAWGNT010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16678
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.027"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(68..1237)
                     /locus_tag="WHR98_000658"
     CDS             complement(68..1237)
                     /locus_tag="WHR98_000658"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEZ2307365.1"
                     /translation="MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAET
                     LVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPD
                     IAQGVNEGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRL
                     PWLRPDAKAQLTVVYDSETGKVKRIDTVVLSTQHDPEIGYEELKNAVIEQIIKPVLPS
                     ELLTDETKYLINPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVD
                     RSAAYACRYVAKNIVAAGLATQCQIQVSYAIGVAEPTSISIDTFGTGKISEEKLITLV
                     REHFDLRPKGIVQMLDLLRPIYSKSAAYGHFGREEPEFTWERTDKAAALRAAAGL"
     regulatory      complement(1420..1530)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01725"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitches modulate the expression of
                     downstream genes in response to levels of
                     S-adenosylmethionine; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF01725"
     gene            1583..2479
                     /locus_tag="WHR98_000659"
     CDS             1583..2479
                     /locus_tag="WHR98_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEZ2307366.1"
                     /translation="MFRLQFGLFPPLRTAMHILLTALLKCLSLLPLSCLHTLGNRLGH
                     LAFYLLKEDRARIVANMCQAGMNPDPKTVKAVFAETAKGGLELALAFFKKPEDIETMF
                     KSVHGWEHVQQALDKHEGLLFITPHIGSYDLGGRYISQRLPFPLTAMYKPPKIKAIDK
                     IMQAGRVRGKGKTAPTSIQGVKQIIKALRSGEATIVLPDHVPSPQEGGEGVWVDFFGK
                     PAYTMTLAAKLAHVKGVKTLFFCCERLPGGQGFDLHIRPVQGELNGDKAHDAAVFNRN
                     AEYWIRRFPTQYLFMYNRYKMP"
     gene            complement(2523..3587)
                     /gene="tsaD"
                     /locus_tag="WHR98_000660"
     CDS             complement(2523..3587)
                     /gene="tsaD"
                     /locus_tag="WHR98_000660"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEZ2307367.1"
                     /translation="MLVLGIESSCDETGVALYDTERGLRAHCLHTQMAMHAEYGGVVP
                     ELASRDHIRRLVPLTEGCLAQAGASYGDIDAVAFTQGPGLGGALLAGSSYANALALAL
                     GKPVIPVHHLEGHLLSPLLAEEKPDFPFVALLVSGGHTQIMAVRGIGDYALLGESVDD
                     AAGEAFDKTAKLLGLPYPGGAKLSELAESGRPEAFVFPRPMIHSDDLQMSFSGLKTAV
                     LTAVEKVREANGSETIPEQTRNDICRAFQDAVVDVLAAKVKKALLQTGFRTVVVAGGV
                     GANRKLRETFGNMTVQIPTPKGKPKHPSEKVSVFFPPMAYCTDNGAMIAFAGAMHLGK
                     GREVGAFNVRPRWPLSEIVR"
     gene            complement(3678..4865)
                     /gene="ccsB"
                     /locus_tag="WHR98_000661"
     CDS             complement(3678..4865)
                     /gene="ccsB"
                     /locus_tag="WHR98_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HEZ2307368.1"
                     /translation="MTEHYKTLPEHELLIQKSLISNLNLWDWVFAVLVFAATVFVQTR
                     SGMHMDIYETVMLWASAGIAVFLGWFFKPMRWFVPLSVLLAYAAVGLYGGDIKSAEIF
                     LLRYFLSSQSAIMWQCAFVFFALFAYISGAVLASVKNVPTNTLLGMGTVFAWVSAVAG
                     FTGLLVRWHESYLLRPDAGHIPVSNLYEVFILFLVITALMYLYYEGKFAIQKLGGFVF
                     GFMAVVVGFVLWYSVSREAHTIQPLIPALQSWWMKIHVPANFIGYGAFCISAMLGIAE
                     LVSLRAEGKGGKSWLPQSVLIEEVMYKAIAVGFLFFTIATILGALWAADAWGRYWSWD
                     PKETWAFIVWLNYAVWLHLRLVAGWRGKVLAWWAIIGLFVTAFAFIGVNMFLSGLHSY
                     GTL"
     gene            complement(4858..6810)
                     /locus_tag="WHR98_000662"
     CDS             complement(4858..6810)
                     /locus_tag="WHR98_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein"
                     /protein_id="HEZ2307369.1"
                     /translation="MRFAVALLSLLGIASVIGTVLQQNQPQTDYLVKFGPFWAQIFGF
                     LGLYDVYASAWFVVIMMFLVVSTSLCLIRNVPPFWREMKSFREKVKEKSLAAMRHSSL
                     LDVKIAPEVAKRYLEVQGFQGKTINREDGSVLIAAKKGTMNKWGYIFAHVALIVICLG
                     GLIDSNLLLKLGMLTGRIVPDNQAVYAKDFKPESILSASNLSFRGNVNISEGQSADVV
                     FLNADNGILVQDLPFEVKLKKFHIDFYNTGMPRDFASDIEVTDKATGEKLERTIRVNH
                     PLTLHGITIYQASFADGGSDLTFKAWNLGDASREPVVLKATSIHQFPLEIGKHKYRLE
                     FDQFTSMNVEDMSEGAEREKSLKSTLNDVRAVTQEGKKYTNIGPSIVYRIRDAAGQAV
                     EYKNYMLPVLQEQDYFWITGTRSGLQQQYRWLRIPLDKQLKADTFMALREFLKDGEGR
                     KRLVADATKGAPAEIREQFMLAAENTLNIFAQKGYLGLDEFITSNIPKEQQDKMQGYF
                     YEMLYGVMNAALDETIRRYGLPEWQQDEARNRFLLHSMDAYTGLTEYPAPMLLQLDGF
                     SEVRSSGLQMTRSPGALLVYLGSVLLVLGTVLMFYVREKRAWVLFSDGKIRFAMSSAR
                     SERDLQKEFPKHVESLQRLGKDLNHD"
     gene            complement(7087..7710)
                     /locus_tag="WHR98_000663"
     CDS             complement(7087..7710)
                     /locus_tag="WHR98_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c4"
                     /protein_id="HEZ2307370.1"
                     /translation="MKRLTLLAFVLAAGAVSASPKADVEKGKQVAATVCAACHAADGN
                     SGIAMYPRLAAQHTAYIYHQTIGIRDGKRTHGSAAVMKPVVMNLSDQDILNVSAFYAK
                     QQPKSGEANPKENPELGAKIYRGGLSDKKVPACMSCHGPSGAGMPGGGSEIQAYPRLG
                     GQHQAYIVEQMNAYKSGQRKNTIMEDIANRMSEEDLKAVANFIQGLR"
     gene            7916..8545
                     /locus_tag="WHR98_000664"
     CDS             7916..8545
                     /locus_tag="WHR98_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEZ2307371.1"
                     /translation="MNLFQNAKFFTTVNHLKDLPDTPLEIAFVGRSNAGKSSAINTLT
                     NHVRLAYVSKTPGRTQHINFFELQNGNFMVDLPGYGYAQVPEAVRAHWVNLLGDYLQQ
                     RKQLIGLVLIMDARHPLKELDIRMLDFFHTTGRPVHILLSKADKLSKNEQIKTLSQVK
                     KLLKPYSDRQNISVQLFSSLKKQGIDEANRTVGSWFDAADAAASSPEEN"
     gene            complement(8666..11062)
                     /locus_tag="WHR98_000665"
     CDS             complement(8666..11062)
                     /locus_tag="WHR98_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEZ2307372.1"
                     /translation="MIKKILTTCFGLVFGFCVFGVGLVAIAILVTYPKLPSLDSLQHY
                     QPKMPLTIYSADGEVIGMYGEQRREFTKIGDFPEVLRNAVIAAEDKRFYRHWGVDVWG
                     VARAAVGNVVSGSVQSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDK
                     ILELYFNQIYLGQRAYGFASAAQIYFNKNVRDLTLAEAAMLAGLPKAPSAYNPIVNPE
                     RAKLRQKYILNNMLEEKMITVQQRDQALNEELHYERFVRKIDQSALYVAEMVRQELYE
                     KYGEDAYTQGFKVYTTVRADHQKVATEALRKALRNFDRGSSYRGAENYIDLSKSEDVE
                     ETVSQYLSGLYTVDKMVPAVVLDVTKKKNVVIQLPSGRRVTLDRRALGFAARAVNNEK
                     MGEDRIRRGAVIRVKNNGGRWAVVQEPLLQGALVSLDAKTGAVRALVGGYDFHSKTFN
                     RAVQAMRQPGSTFKPFVYSAALSKGMTASTVVNDAPISLPGKGPNGSVWTPKNSDGRY
                     SGYITLRQALTASKNMVSIRILMSIGVGYAQQYIRRFGFRSSELPASLSMALGTGETT
                     PLKVAEAYSVFANGGYRVSSHVIDKIYDRDGRLRAQMQPLVAGQNAPQAIDPRNAYIM
                     YKIMQDVVRVGTARGAAALGRTDIAGKTGTTNDNKDAWFVGFNPDVVTAVYIGFDKPK
                     SMGRVGYGGTIAVPVWVDYMRFALKGKQGKGMKMPEGVVSSNGEYYMKERMVTDPGLT
                     LDNSGIAPQPSRRAKEDDGGAAEGGRQAADDEVRQDMQETPVLPSNTGSKQQQLDSLF
                     "
     gene            11214..12329
                     /locus_tag="WHR98_000666"
     CDS             11214..12329
                     /locus_tag="WHR98_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilM"
                     /protein_id="HEZ2307373.1"
                     /translation="MRLFKSLKNPKKTDAKLPKKSSGLNNRAAIGIDIDQHSIKMVQL
                     SGRSLNQIQLEKYVIAKLPKNIIQGNKVQNYDQLVTYLQQAYAKLGTSCKNIIASVPQ
                     NLATIEQLTYTDKDAELDLQGFVESSISEVSSISLEEANYDYQVLSQSAAGEAVLAVA
                     SRKDEIEPLIDAFNAAGMKLSALDVDIFGQYNAYALWINHFAPELAAEKVAIFGVYAA
                     QTYALVIQDGKILYKQETSVSEEQLNQLIQRTYQVTEEKAEEIINSPQKPSDYQESVA
                     NYFNQQITQEIQRVLQFYYTTQTADDMTDIKHILLTGEAARQEGIAQTVASQTNADVQ
                     CVHPARYFADNLKTDKQQFELDAPTLTRAFGLAVRGL"
     gene            12332..12931
                     /locus_tag="WHR98_000667"
     CDS             12332..12931
                     /locus_tag="WHR98_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HEZ2307374.1"
                     /translation="MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYL
                     FIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQEKDAFLIKKNKIEELQLKRLQAA
                     KILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
                     SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN"
     gene            12932..13579
                     /locus_tag="WHR98_000668"
     CDS             12932..13579
                     /locus_tag="WHR98_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4a pilus biogenesis protein PilO"
                     /protein_id="HEZ2307375.1"
                     /translation="MASKSSKTNLDLNNLHLLNLPARLFIALLAVAAVLGLGYAGLFK
                     SQMESLEEYEAKETELKNTYKQKSIDAASLNNLRDELASIRSAFDIMLKQLPTDAEIP
                     NLVQELHQAGSSNGLRLDSVMPQPPVDDGPIKRLPYSISITGNYEQISQFTRDVGSLS
                     RIITLESLKIAQSPENGGNPDGKSSILNLSAIATTYQAKSVEELAAEAAQNAEQK"
     gene            13597..14142
                     /locus_tag="WHR98_000669"
     CDS             13597..14142
                     /locus_tag="WHR98_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilP"
                     /protein_id="HEZ2307376.1"
                     /translation="MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAP
                     TLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDTKRIKETLEKFSLENMRYVGILK
                     SGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
                     LLLNSSDKNTEQAAAPAAEQN"
     gene            14161..16446
                     /locus_tag="WHR98_000670"
     CDS             14161..16446
                     /locus_tag="WHR98_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HEZ2307377.1"
                     /translation="MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKV
                     SFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVLEYADPLLSKISAAQNSSRARLV
                     LNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPSTKSAV
                     SVSKPFTPAKQQAAAPFTESVVSVSAPFSPAKQQTAAPAKQQTAAPAKQQAAAPAKQT
                     NIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTTLQRSLDVADFKT
                     PVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKT
                     FTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQ
                     ARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRS
                     ILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQV
                     MIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGAETKINL
                     PITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIP
                     FTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNQTIL
                     CISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTRGKKTDR
                     RELLIFITPRIMGTAGNSLRY"
BASE COUNT         4514 a         4740 c         3781 g         3643 t
ORIGIN      
        1 tgttaatcca ctatataaaa atgccgtctg aactgttcag acggcatttt tgattttcaa
       61 accggaatta cagccccgct gccgccctca atgcagcagc tttgtcggtg cgctcccaag
      121 tgaactcagg ttcttcgcgg ccgaaatgtc cgtaagcggc ggatttactg taaatcgggc
      181 gcaagaggtc gagcatttgg acgatgcctt tggggcgcag gtcgaaatgt tcgcgaacta
      241 aggtaatcag tttttcttcg ctgattttgc ctgtgccgaa agtatcgatg gaaatcgaag
      301 tcggttcggc aacgccgatg gcgtaggaaa cttggatttg gcattgggtt gccaatcctg
      361 cggcgacgat gtttttcgcc acatagcggc aggcgtaggc ggcggaacgg tcaaccttgg
      421 acgggtcttt gccggaaaac gcgccgccgc cgtgcggagc cgcgccgccg taggtatcga
      481 cgatgatttt acggccggtc aaaccgcagt cgccttgcgg gccgccgatg acgaagcggc
      541 cggtcgggtt gatcaggtat ttggtttcgt cggtcagcag ttcagacggc aggacgggct
      601 tgataatctg ctcaatgacg gcgtttttca actcttcata accgatttcc ggatcgtgtt
      661 gcgtagagag gacgacggta tcaatgcgtt ttaccttacc ggtttcgctg tcgtaaacca
      721 cggtcagttg ggctttggca tcaggacgca gccacggcag gcggccgtct ttgcgcaatt
      781 cgctttggcg ttgcatcagg cggtggctgt aatagatggc aaacggcatc agggtcgggg
      841 tttcgtcgca ggcgtagccg aacatcagac cttggtcgcc tgcgccttgg ttcaagtcga
      901 tgccttcgcc ttcgtttacg ccttgggcaa tgtccggaga ttgttggtcg tagtacacgc
      961 cgaccgcgca gccgttggca tcaaagccca gctcggagga gttgtagccg atgcgtttga
     1021 tggtttcgcg tgcgactttg atgtagtcca cttgggcggt ggtggtgatt tcgcccgcca
     1081 atacgcacaa gcctgtgttg accaaagttt ctgcggcgac acgcgctttg gggtcttgcg
     1141 ccagaatcgc atccaaaata gcatcggata cttggtcggc cactttgtcc ggatggcctt
     1201 cggataccga ttcggaagta aacagatatt cgctcattga gattttcctt gaaaaacaaa
     1261 ccatcttcgt tagacggcat gttgtatgaa cataatgtcg acagcgggaa atatagcaaa
     1321 atttccctat tcgcgccatt cagttgagaa acattcccat ttgaatggca ctttggaatc
     1381 tctgcccgta cgtttcgtac aggcaaaaaa attcccgcat caagcgggtt tggattgctc
     1441 tggtgagcca catcggcttt tcaaccgtcc accttacttt tccttttgaa aagcaggttg
     1501 gcatggaatt cccaactctt aatgcagcgc ggatggtagc agaaaagcct ttccgccgca
     1561 atacttccct ttttcagacg gcatgtttcg tttacaattc gggctgtttc cccctttgcg
     1621 aaccgccatg cacatcctgt tgaccgccct gctcaaatgc ctctccctgc tgccgctttc
     1681 ctgtctgcac acgctgggaa accggctcgg acatctggcg ttttaccttt taaaggaaga
     1741 ccgcgcgcgc atcgtcgcca atatgtgtca ggcaggcatg aatcccgacc ccaaaacggt
     1801 caaagccgtt tttgcggaaa cggcaaaagg cggtttggaa cttgccctcg catttttcaa
     1861 aaaaccggaa gacatagaaa caatgttcaa gtcggtacac ggctgggaac acgtgcagca
     1921 ggctttggac aaacacgaag ggctgctgtt catcacgccg cacatcggca gctacgattt
     1981 gggcggacgc tacatcagcc aacggctgcc attcccctta accgccatgt ataaaccgcc
     2041 gaaaatcaaa gcgatagaca aaatcatgca ggcgggcagg gttcgcggca aaggaaaaac
     2101 cgcgcctacc agcatacaag gggtcaaaca aatcatcaaa gccctgcgtt cgggcgaagc
     2161 aaccatcgtc ctgcccgacc acgtcccctc ccctcaagaa ggcggggaag gcgtatgggt
     2221 ggatttcttc ggcaaacctg cctataccat gacgctggcg gcaaaattgg cacacgtcaa
     2281 aggcgtgaaa accctgtttt tctgctgcga acgcctgcct ggcggacaag gtttcgattt
     2341 gcacatccgc cccgtccaag gggaattgaa cggagacaaa gcccatgatg ccgccgtgtt
     2401 caaccgcaat gccgaatatt ggatacgccg ttttccgacg cagtatctgt ttatgtacaa
     2461 ccgctacaaa atgccgtaac gaaaataaaa atgccgtctg aacaatttca gacggcattt
     2521 tgtcatctga cgatttccga cagcggccag cgcggacgga cattgaacgc accgacctcc
     2581 ctgcccttgc ccaggtgcat cgcaccggca aaggcaatca tggcaccgtt gtccgtgcag
     2641 tatgccatcg gcgggaaaaa cacgctgact ttttcggacg gatgtttcgg cttgcctttt
     2701 ggggtcggga tttgcaccgt catattgccg aaagtttcac ggagtttgcg gtttgcaccg
     2761 accccgccgg cgaccactac ggttctgaac cctgtctgca acagggcttt tttcactttc
     2821 gccgccaaca catcgaccac cgcatcttga aacgcacggc aaatatcgtt gcgggtttgc
     2881 tcgggaatgg tttccgaacc gtttgcctca cgcacttttt caacggcagt caaaacagcg
     2941 gttttcaaac ctgaaaaact catctgcaaa tcgtcggaat gaatcatcgg gcgcggaaaa
     3001 acaaacgctt cgggcctgcc cgattccgca agttccgaca gtttcgcacc gcccggatac
     3061 ggcaagccca gcagtttcgc cgttttgtcg aatgcctcgc ccgccgcatc atcgacgctc
     3121 tcgcccaaaa gcgcgtagtc gcctatgccc ctgaccgcca taatctgcgt atgcccgccc
     3181 gaaaccaaca gcgcgacaaa aggaaagtcg ggtttttcct ccgccaacag cggcgacagc
     3241 agatgtcctt ccaaatgatg gacggggatg acgggcttgc ccaatgccaa agccagtgca
     3301 ttggcgtagc tcgaacccgc cagcagcgca ccgcccagac ctggaccttg ggtaaaggca
     3361 accgcgtcaa tgtcgccata cgatgcaccc gcctgcgcca aacagccttc cgtcaacgga
     3421 acaaggcggc ggatatggtc gcggcttgcc agctccggca caaccccgcc gtattcggcg
     3481 tgcattgcca tctgcgtgtg caggcagtgc gcccgcaatc cgcgttccgt atcgtaaagc
     3541 gcaacgcctg tttcgtcgca agaagactcg attcctaata ccaacataat ccgataccgt
     3601 ccgaaaattg aaaaaacggt gcgccaaaaa gcgggaaatg ccgtctgaag cccttcagac
     3661 ggcatcgtcg caccgtatca aagcgttccg taagaatgca gcccgctcaa aaacatattc
     3721 acgccgataa aggcgaatgc ggttacgaac aaaccgataa tcgcccacca cgccagcact
     3781 ttgccgcgcc aaccggcaac cagccgcaag tgcagccaaa cggcgtaatt gagccagacg
     3841 atgaacgccc acgtctcttt cgggtcccaa ctccaatagc gtccccaagc atccgccgcc
     3901 cacagcgcac ccaaaatggt ggcaatggta aagaacagaa agccgacggc aatcgcctta
     3961 tacataactt cctcaatcaa cacggattgc ggcagccacg atttcccgcc ttttccttcc
     4021 gcacgcaggg aaaccagttc ggcaataccg agcatcgcgg aaatgcaaaa cgcgccgtaa
     4081 ccgataaagt ttgccggaac gtggattttc atccaccaag attgcaatgc cggaatcagc
     4141 ggctggatgg tatgcgcctc gcgggacacg ctgtaccaca agacaaatcc aaccacgacc
     4201 gccataaagc cgaacacgaa gccgcccaat ttctgtatgg cgaacttacc ttcataataa
     4261 agatacatca gcgcggtaat caccaaaaac aggatgaaca cttcatacag gttggaaacc
     4321 ggaatatgcc ccgcatcggg acggagcaga tagctttcgt gccaacgtac cagcagaccg
     4381 gtaaagcctg ctacggcaga cacccatgca aacacggttc ccatacccaa cagcgtgttg
     4441 gtcggcacat tttttacgct tgccaaaacc gcgcccgaaa tataggcgaa cagggcgaaa
     4501 aagacaaagg cgcactgcca catgatcgcc gactggctgc tgaggaaata ccgcaacagg
     4561 aaaatctctg ccgatttgat gtcgcctccg tacaaaccga cggcggcata ggcaagcaat
     4621 acgcttaaag gaacaaacca gcgcatcggt ttgaaaaacc aacccaaaaa cacggcaata
     4681 ccggcacttg cccacaacat gaccgtttcg taaatgtcca tatgcatacc ggaacgggtc
     4741 tgtacgaaaa ccgtagccgc aaaaaccagc acggcaaata cccaatccca aagattcaga
     4801 ttgctgatca aagacttctg aatcagcagc tcgtgttccg gaagggtttt atagtgttca
     4861 gtcatgattc aagtccttgc cgagccgttg cagactctcg acgtgttttg gaaattcctt
     4921 ctgcaaatcc cgttcgctgc gggccgaaga catggcaaaa cggattttgc cgtctgaaaa
     4981 caatacccac gcccgttttt cgcgcacata aaacatcaat accgtaccca ataccaacag
     5041 caccgagccg agatagacca aaagcgcacc cggggaacgg gtcatctgca aacccgacga
     5101 acgcacctcg gaaaacccat caagttgcag cagcataggc gcgggatatt cggtcaaacc
     5161 cgtgtacgca tccatactgt gcagcaggaa acgattccgc gcttcatcct gctgccattc
     5221 gggcaagccg taccggcgta tggtttcatc caaagcagcg ttcatcacgc cgtaaagcat
     5281 ttcgtagaaa tagccctgca tcttatcctg ctgctctttc gggatattgg acgtaataaa
     5341 ttcgtccaat cccaaatagc ctttttgtgc aaagatgttc agcgtgtttt ccgcagccag
     5401 catgaattgt tcgcggattt cggcaggtgc gcctttggtt gcgtcggcaa ccagacgttt
     5461 gcgcccttcc ccatctttca aaaactcacg caatgccata aaggtgtccg ctttcaactg
     5521 cttgtccaag gggatacgca gccagcggta ttgctgctgc aagccgctgc gcgtgccggt
     5581 aatccaaaaa taatcctgtt cctgcaaaac cggcagcata tagtttttat attcgaccgc
     5641 ctgccctgcc gcatcacgga tacggtaaac aatggaaggg ccgatattgg tgtatttttt
     5701 accttcctga gtaacggcgc ggacatcgtt cagcgtggat ttcaggcttt tttcccgttc
     5761 cgcgccctcg ctcatgtcct ccacattcat agaagtaaac tgatcgaact caagacgata
     5821 tttgtgtttg ccaatttcca acggaaactg gtgtatggat gttgccttca acacgacagg
     5881 ctcgcgcgaa gcatcaccca aattccacgc cttgaatgtc aaatccgaac cgccgtcggc
     5941 aaaactcgcc tgataaatcg tgatgccgtg caaggtcaaa ggatggttca cgcggatggt
     6001 gcgctcgagt ttctcaccgg ttgccttatc cgttacttca atatcactgg caaaatcgcg
     6061 cggcataccc gtattgtaaa aatcgatatg gaattttttc agtttgactt caaaaggcaa
     6121 gtcctgaacc aatatcccgt tgtcggcatt caggaaaacc acatccgcac tctgcccctc
     6181 ggaaatattg acgttgcccc taaatgagag attggacgca ctcaaaatac tttcgggctt
     6241 gaaatccttg gcataaaccg cctgattgtc cggaacaatc cgaccggtca gcatacccag
     6301 tttcaacagc aggttactgt ctatcaaccc gcccaggcaa atgacaatca aagcaacatg
     6361 ggcaaagata tagccccatt tgttcatcgt gccttttttg gcggcaatca gaaccgaccc
     6421 gtcttcacgg ttaatggttt ttccctgaaa accttgtact tccagataac gtttggcaac
     6481 ctcgggcgca atttttacat ccaacagcga agaatggcgc atcgccgcca gagatttttc
     6541 tttaaccttt tcccgaaaag acttcatttc gcgccagaac ggcggcacat tgcgaatcag
     6601 gcacaaactg gtagaaacca ccaaaaacat catgataacg acaaaccatg ccgaagcata
     6661 gacgtcatac agtcccagaa aaccaaaaat ctgcgcccaa aaaggtccga atttgaccaa
     6721 ataatccgtc tgcggctggt tttgctgcaa caccgtaccg ataaccgatg caatacccag
     6781 cagactgagc aaagcgactg caaagcgcat ggagctgaaa aaagcgaacc acggacggga
     6841 aagaagtggg ggagatctac gggatttact cattgtgtgt ttattccgcc atcaggaata
     6901 tgggaaagca gaattgggca aacagaaaac aacgtcccga ttctactgtc ttgatgcttt
     6961 ttatttcaag acaatgaaga cagcctgcat cgattccaac ggttgcgatt gaaaaaactt
     7021 atcgcagaat tgcctgaagc cgtctgaaaa cttttcagac ggcctctaaa acagactatt
     7081 gcggaattaa cgcaaacctt ggataaagtt ggcgaccgct ttcaaatctt cttcagacat
     7141 acggtttgca atatcttcca tgatggtatt tttacgctga ccggacttgt aggcattcat
     7201 ctgttcaaca atatatgcct gatgctgacc gcccaaacgc ggataagcct gaatttcgct
     7261 tccgcctccc ggcatacccg caccgctcgg accgtggcag gacatacacg ccggcacttt
     7321 tttatcgctc aaaccgccgc gatagatttt cgcacccaat tcgggatttt ccttaggatt
     7381 ggcttcaccg gatttgggct gctgtttggc atagaatgcg gatacgttca aaatatcctg
     7441 atcgctcaaa ttcattacca ccggtttcat cacagctgcc gaaccgtggg tacgtttgcc
     7501 gtcgcggata ccgatagttt gatgatagat gtaagcagta tgctgtgccg ccaaacgtgg
     7561 atacatcgca atgccgctat taccgtctgc tgcatggcaa gccgcacaaa ccgttgcggc
     7621 aacctgtttg cctttttcca cgtctgcttt gggagatgcg gaaaccgcac cggcagccaa
     7681 aacaaaggcc aataaagtca atcgtttcat ggagtgctcc tgattacagc attggataac
     7741 gcaacaatgc tctttttata ttcaaatacg ggatttttga cccgattaaa accgatgatt
     7801 ctgtaaacgt gttattctat actaaattta cattaaatta ccactgtgtt tcacataaaa
     7861 ccaaccgcat atttttgctg tcggacaaac ggcggcggaa aacaaggata tgcccatgaa
     7921 cctttttcaa aacgccaaat tcttcacgac ggtaaaccat ctcaaagacc tgcccgacac
     7981 ccctctcgaa attgcctttg tcggcaggag caatgccgga aaatccagtg ccatcaatac
     8041 cctgaccaac catgtccgtc ttgcctacgt ttcaaaaaca cccggacgga cgcagcatat
     8101 caacttcttc gagctgcaga acggcaattt tatggtcgat ttgcccggct acggttatgc
     8161 ccaagtccct gaagcagtac gcgcacattg ggtcaatctg ctcggcgact atctgcaaca
     8221 gcgcaaacag cttatcgggc tggttttgat tatggatgcc cgccatcctt taaaagaact
     8281 cgacatccgt atgctggatt ttttccacac gaccggcaga ccggttcaca tcctgctgtc
     8341 aaaagccgac aaattatcca aaaacgaaca gataaaaacc ctgtcccaag tcaaaaaact
     8401 gctcaaacct tattccgaca ggcaaaacat cagcgtacag ctgttttcca gcctgaaaaa
     8461 acaaggtatt gacgaggcca accgaactgt cggaagctgg tttgacgcag cagatgccgc
     8521 cgcttcctct ccagaggaaa actgacccca attatacgga aaccgtattt cccccacttg
     8581 accgaccgca aacatttaaa aaattgccac tgccaaatct aaaatgccgt ctgaaagact
     8641 tttcagacgg cattttgcgg agtctttaaa acagagaatc caactgctgc tgtttggaac
     8701 cagtattact cggaagcacc ggcgtttcct gcatatcttg gcggacttcg tcatccgccg
     8761 cctgccgtcc gccttctgcc gcgcccccgt catcttcttt tgcccgtcgg gaaggttgcg
     8821 gcgcaatacc gctgttgtcc agcgtcaagc ccggatcggt taccatacgt tccttcatat
     8881 agtattcgcc attgctgctg accacacctt caggcatttt catccccttg ccctgctttc
     8941 ctttcaacgc aaaacgcata tagtccaccc aaaccggcac cgcaatcgta ccgccgtagc
     9001 cgacacgccc catactctta ggtttgtcga agccgatata tacggcagta accacatcag
     9061 ggttaaaacc gacaaaccac gcatccttat tgtcattggt cgtacccgtt ttaccggcaa
     9121 tatccgttct tcccaacgca gctgcccccc ttgccgtacc gacacggacc acatcctgca
     9181 taatcttata cataatatag gcattgcgcg gatcgattgc ctgaggcgca ttttgcccag
     9241 ccaccaaagg ttgcatttgg gcgcgcaacc tgccgtctct gtcataaatc ttatcgatta
     9301 cgtgcgaaga aaccctatat ccgccgttcg caaatacgct atatgcctcc gccactttca
     9361 acggcgttgt ctcgcccgta cctaaagcca tagacaggct tgccggcagc tcggacgacc
     9421 tgaagccgaa acgccggata tactgttgcg cgtaaccgac accgatagac atcaaaatac
     9481 ggatggaaac catattcttg gaagccgtca gagcctgtct caaagtaatg tagccggaat
     9541 atctgccgtc tgaattttta ggtgtccaaa ccgaaccgtt cggccctttc cccggcaggg
     9601 aaatcggcgc atcgttaacc actgtggacg cggtcatccc cttagataat gccgccgaat
     9661 agacaaacgg cttaaaggtc gaacccggct gccgcattgc ctgaacggca cgattgaatg
     9721 ttttgctgtg aaaatcataa ccgccgacca gcgcgcgcac agctccggtt tttgcatcca
     9781 gcgaaaccaa agccccctgc agcaacggct cttgaaccac cgcccaacgc ccgccgttgt
     9841 ttttgacacg gatgaccgcg cccctgcgga tacggtcctc ccccattttt tcattattga
     9901 ccgcgcgggc cgcaaagccc aaggcgcgcc tatcaagcgt aacccgcctg ccgctgggca
     9961 gctgtatgac gacatttttc tttttagtca catccaacac aacggcggga accattttat
    10021 cgacggtata gagtcccgac agatactggc tgacagtctc ctcgacatct tcactcttac
    10081 tcaaatcgat atagttttcc gcaccgcggt agctgctgcc gcgatcgaaa ttccgtagag
    10141 ccttgcgcaa tgcctcggtt gccaccttct gatgatcggc gcggaccgtg gtataaacct
    10201 taaaaccctg cgtataggca tcttcaccgt atttctcata cagttcctga cgcaccattt
    10261 ccgccacata taaagcactc tgatcgattt tccgaacaaa ccgctcgtaa tgcagttcct
    10321 cattcaacgc ctgatcgcgc tgttgcacgg taatcatctt ctcctcgagc atattgttca
    10381 aaatatactt ctggcgcaac ttggcacgtt ctggattaac aatcggatta taggcagacg
    10441 gagccttggg cagtcccgca agcatggcgg cttccgccaa agtcaaatct cggacattct
    10501 tattgaaata gatttgcgcg gcagatgcaa aaccataggc gcgctgaccg aggtaaatct
    10561 gattgaaata caactcgagg attttgtctt tgcttaaaga ctgctcgatt ttataggcaa
    10621 gcaacacctc attgaatttg cgtgtgaacg ttttttcact gctcaaataa aaatttttcg
    10681 ccacctgctg cgtaatcgta ctcgcacccg actgcacgct gccggacacg acattgccga
    10741 cggcagcgcg ggcaacaccc caaacatcca ccccccaatg ccggtaaaag cgtttgtcct
    10801 cggcggcgat aaccgcattc cgcaacacct ctgggaaatc gccgattttt gtaaattcgc
    10861 gccgctgctc cccatacata ccgatgactt ccccatccgc cgaataaata gtcaacggca
    10921 ttttaggctg gtaatgctgc aaagaatcca aagacggcag tttcggatac gttaccaaaa
    10981 tagcaatggc aaccaaaccc actccaaata cacaaaaccc aaaaaccaaa ccaaaacaag
    11041 tcgttaaaat ctttttaatc atagctgaat aataatttac cattattggt attaaataaa
    11101 gtaaaatagc aaccgatttc tacaaagcac ggtttcaatg tgcaaagaac aaggaatcca
    11161 ttacggatac cgaaacggtt actcactgta caaataaagc aggaactttc atcatgcgct
    11221 tgtttaaaag cttgaaaaac cctaaaaaaa cagatgccaa gctccctaaa aaatcttcgg
    11281 gactcaataa ccgcgcggca atcggcatcg atatcgacca gcattccatc aaaatggtcc
    11341 aattgtcagg acgtagttta aaccaaattc aattggaaaa atacgtcatt gccaaattac
    11401 caaagaatat cattcaaggc aataaagtcc aaaattacga tcaacttgtt acatatttgc
    11461 aacaagccta tgccaaactg ggtacttcgt gcaaaaacat catcgcgtcc gtcccgcaaa
    11521 atctggcaac catcgaacaa ttgacctaca cagacaaaga tgcagaatta gacctgcagg
    11581 ggttcgtgga gtcctccatc tccgaagtca gctcgatatc gctcgaagaa gccaattacg
    11641 actatcaggt cttgtcccaa tcggccgccg gcgaagctgt gttggccgtc gcatcgagaa
    11701 aggatgaaat cgaacccctg attgacgcat tcaacgccgc cggtatgaaa ttatccgcgc
    11761 ttgatgtgga cattttcgga caatacaacg cctacgcgct atggataaac catttcgccc
    11821 ccgagcttgc agccgaaaaa gtcgccattt tcggcgtata tgccgcacag acctacgcct
    11881 tggtcatcca agacggaaaa atcctataca aacaggaaac ctccgtcagc gaagaacagc
    11941 tcaaccaact catccagcgc acctatcagg taacagaaga aaaagcggaa gaaatcatca
    12001 actccccgca aaaaccttcc gattaccaag aaagcgtggc aaactatttc aaccagcaga
    12061 ttacccaaga aatacaaagg gtcttgcagt tttattacac cacgcagacc gcagacgata
    12121 tgaccgacat caagcatatc ctgctgaccg gggaagcggc gcgccaggaa ggcatcgccc
    12181 aaaccgtcgc ctcacaaacc aatgcagatg tacaatgcgt ccatcccgcg cgttattttg
    12241 cggacaacct caaaacagac aaacaacaat tcgaacttga tgcgccgaca ctgaccaggg
    12301 cgttcggttt ggcggtacgg ggattataat tatgaacaat ttaatcaaaa tcaacctcct
    12361 cccctacagg gaagagatga acaagcgcaa acagcagcag tttaaaacgc tgatgtacgg
    12421 tgccgtgctg acgggcgttg ccgccgttgc ggcaacctac ctgtttatcg acaatatgat
    12481 caataaccag tcggaaagaa acacgctgct ggaaacctcc atcgcacact tggataccga
    12541 gctgtcggaa atacaaaagc tcaaacagga aaaagatgcc ttcctgatta agaaaaacaa
    12601 aatcgaggag ctccagctca aacgcctcca agccgcaaaa atcctcgaca gcctgaatga
    12661 ggccgtcccc ggaagcacct acctgacctc gctggatgcc gttaccgccg actcttatcg
    12721 gctcagcggc aggacatcca gcgacaaccg cgttgccgcc atgatgaggg cgatgcccaa
    12781 taccggcata ttcaagcaac ccgaattgtt aagcatcaag aaaaacaatt cgcatcaaga
    12841 atttaccctt caggcaacat tacaacccat cgtaaaggcg gccgaatcca aagagaatcc
    12901 ggcttcggga aacgcacagg aggcaaactg aatggcttct aaatcatcta aaaccaactt
    12961 ggatctcaac aaccttcacc tgctcaacct tcctgccagg ctttttatcg ccctgctggc
    13021 cgttgccgcc gtgctggggc tcggttatgc cggattgttc aaaagccaga tggaatccct
    13081 tgaggaatac gaagcaaaag aaaccgaact gaaaaacacc tacaaacaga aaagtatcga
    13141 cgcggccagc ctgaacaacc tgagggacga acttgcctca atccgctctg ccttcgatat
    13201 catgttgaaa cagctgccga cagatgcaga aattcccaac ctggttcaag agcttcatca
    13261 ggcaggttcg agcaacggcc tgcgcttgga cagcgttatg ccccaacctc ccgtagatga
    13321 cggccccatc aaaagattac cctattccat ttccattacc ggaaattacg aacagatcag
    13381 ccaatttacc cgcgatgtcg gcagcctctc ccgaatcatt acccttgagt cgctgaaaat
    13441 cgcccaatct ccggaaaacg gcggcaatcc tgacggcaag agcagcatcc tgaacctcag
    13501 tgccattgcc accacctacc aagcaaaatc cgtagaagag cttgccgcag aagcggcaca
    13561 aaatgccgag caaaaataac ttacgttagg gaaaccatga aacactatgc cttactcatc
    13621 agctttctgg ctctctccgc gtgttcccaa ggttctgagg acctaaacga atggatggca
    13681 caaacgcgac gcgaagccaa agcagaaatc atacctttcc aagcacctac cctgccggtt
    13741 gcgccggtat acagcccgcc acagcttaca gggccgaacg cattcgactt ccgccgcatg
    13801 gaaaccgaca aaaaagggga aaatgccccc gacaccaagc gtattaaaga aacgctggaa
    13861 aaattcagtt tggaaaatat gcgttatgtc ggcattttga agtctggaca gaaagtctcc
    13921 ggcttcatcg aggctgaagg ttatgtctac actgtcggtg tcggcaacta tttgggacaa
    13981 aactacggta gaatcgaaag cattaccgac gacagcatcg tcctgaacga gctgatagaa
    14041 gacagcacgg gcaactgggt ttcccgtaaa gcagaactgc tgttgaattc ttccgacaaa
    14101 aacaccgaac aagcggcagc acctgccgca gaacaaaatt aagaagagga ttactccatt
    14161 atgaatacca aactgacaaa aatcatttcc ggtctctttg tcgcaaccgc cgcctttcag
    14221 acagcatcgg caggaaacat tacagacatc aaagtttcct ccctgcccaa caaacagaaa
    14281 atcgtcaaag tcagctttga caaagagatt gtcaacccga ccggcttcgt aacctcctca
    14341 ccggcccgca tcgccttgga ctttgaacaa accggcattt ccatggatca acaggtactc
    14401 gaatatgccg atcccctgtt gagcaaaatc agtgccgcac aaaacagcag ccgtgcgcgt
    14461 ctggttctga atctgaacaa accgggccaa tacaataccg aagtacgcgg gaacaaagtt
    14521 tggatattca ttaacgaatc ggacgatacc gtgtccgccc ccgcacgccc cgccgtaaaa
    14581 gccgcgcctg ccgcaccggc aaaacaacag gctgccgcac cgtctaccaa gtccgcagta
    14641 tccgtatcca aaccctttac cccggcaaaa caacaggctg ccgcaccgtt taccgagtcc
    14701 gtagtatccg tatccgcacc gttcagcccg gcaaaacaac agacggcagc accagcaaaa
    14761 caacagacgg cagcaccagc aaaacaacag gcggcggcac cggcaaaaca aaccaatatc
    14821 gatttccgca aagacggcaa aaatgccggc attatcgaat tggctgcatt gggctttgcc
    14881 gggcagcccg acatcagcca acagcacgac cacatcatcg ttacgctgaa aaaccatacc
    14941 ctgccgacca cgctccaacg cagtttggat gtggcagact ttaaaacacc ggttcaaaag
    15001 gttacgctga aacgcctcaa taacgacacc cagctgatta tcacaacagc cggaaactgg
    15061 gaactcgtca acaaatccgc cgcgcccgga tactttacct tccaagtcct gccgaaaaaa
    15121 caaaacctcg agtcaggcgg cgtgaacaat gcgcccaaaa ccttcacagg ccggaaaatc
    15181 tcccttgact tccaagatgt cgaaatccgc accatcctgc agattttggc aaaagaatcc
    15241 gggatgaaca ttgttgccag cgactccgtc aacggcaaaa tgaccctctc cctcaaagac
    15301 gtaccttggg atcaggcttt ggatttggtt atgcaggcac gcaacctcga tatgcgccaa
    15361 caagggaaca tcgtcaacat cgcgccccgc gacgagctgc ttgccaaaga caaagccttc
    15421 ttacaggcgg aaaaagacat tgccgatctg ggcgcgctgt attcacaaaa cttccaattg
    15481 aaatacaaaa atgtggaaga attccgcagc atcctgcgtt tggacaatgc cgacacaacc
    15541 ggaaaccgca atacgcttgt cagcggcagg ggcagcgtgc tgatcgatcc cgccaccaat
    15601 accctgattg ttaccgatac ccgcagcgtc atcgaaaaat tccgcaaact gattgacgaa
    15661 ttggacgtac ccgcgcaaca agtgatgatt gaggcgcgta tcgtcgaagc ggcagacggc
    15721 ttctcgcgcg atttgggcgt taaattcggc gcgacaggca agaaaaagct gaaaaatgat
    15781 acaagcgcat tcggctgggg ggtaaactcc ggcttcggcg gcgacgataa atggggggcc
    15841 gaaaccaaaa tcaacctgcc gattaccgct gccgcaaaca gcatttcgct ggtgcgcgcg
    15901 atttcctccg gtgccttgaa tttggaattg tccgcatccg aatcgctttc aaaaaccaaa
    15961 acgcttgcca atccgcgcgt gctgacccaa aaccgcaaag aggccaaaat cgaatccggt
    16021 tacgaaattc ctttcaccgt aacctcaatc gcgaacggcg gcagcagcac gaacacggaa
    16081 ctcaaaaaag ccgtcttggg gctgaccgtt acgccgaaca tcacgcccga cggccaaatc
    16141 attatgaccg tcaaaatcaa caaggactcg cctgcgcaat gtgcctccgg taatcagacg
    16201 atcctgtgta tttcgaccaa aaacctgaat acgcaggcta tggttgaaaa cggcggcaca
    16261 ttgattgtcg gcggtattta tgaagaagac aacggcaata cgctgaccaa agtccccctg
    16321 ttgggcgaca tccccgttat cggcaacctc tttaaaacac gcgggaaaaa aaccgaccgc
    16381 cgcgaactgc tgattttcat taccccgagg attatgggta cggccggcaa cagcctgcgc
    16441 tattgatgcg tcaaaataag ggcatatgtt ttacggcata tgccctttct ttatgctttt
    16501 tgccgcgacc gaaatgccgt cattcccgcg caggcagaaa tccaacttgt ccggttccgg
    16561 ttgtttttcg tctcgtaact tttgagccgt cattcccgcg caggcagaaa tccagtccgt
    16621 tcagtttcgg tcatttccga taaattcctg ttgcttttca tttctggatt cccacttt
//
LOCUS       DAWGNT010000028        16499 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.028, whole genome shotgun sequence.
ACCESSION   DAWGNT010000028 DAWGNT010000000
VERSION     DAWGNT010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16499
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.028"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            208..1272
                     /locus_tag="WHR98_000671"
     CDS             208..1272
                     /locus_tag="WHR98_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-butanediol dehydrogenase"
                     /protein_id="HEZ2307378.1"
                     /translation="MKAARFYDKGDIRIEDIPEPTVAPGTVGINVAWCGICGTDLHEF
                     MEGPIFIPPCGHPHPISGESAPVTMGHEFSGVVYAVGEGVDDIKVGQHVVVEPYIIRD
                     DVPTGEGSNYHLSKDMNFIGLGGCGGGLSEKIAVKRRWVHPISDKIPLDQAALIEPLS
                     VGHHAYVRSGAKAGDVALVGGAGPIGLLLAAVLKAKGIKVIITELSKARKDKARESGV
                     ADYILDPSEVDVVEEVKKLTNGEGVDVAFECTSVNKVLDTLVEACKPAANLVIVSIWS
                     HPATVNVHSVVMKELDVRGTIAYCNDHAETIKLVEEGKINLEPFITQRIKLDELVSEG
                     FERLIHNNESAVKIIVSPNL"
     gene            1413..1736
                     /locus_tag="WHR98_000672"
     CDS             1413..1736
                     /locus_tag="WHR98_000672"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HEZ2307379.1"
                     /translation="MGDSVLSAIQQTITQRKSANPSESYVAQLLHKGEDKILKKVIEE
                     AGEVLMASKDKNPSHLVYEVADLWFHTMILLTHHDLKAEDVLDELARRQGLSGLAEKA
                     ARTES"
     gene            1808..2131
                     /locus_tag="WHR98_000673"
     CDS             1808..2131
                     /locus_tag="WHR98_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEZ2307380.1"
                     /translation="MDNCIFCKIAAKDIPAQTVYEDGEMVCFKDINPAAPVHLLLIPK
                     VHFDSLAHAAPEHQPLLGKMMLKVPEIAKAAGLADGFKTLINTGKGGGQEVFHLHIHI
                     MGTPV"
     gene            2178..2381
                     /gene="tatA"
                     /locus_tag="WHR98_000674"
     CDS             2178..2381
                     /gene="tatA"
                     /locus_tag="WHR98_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HEZ2307381.1"
                     /translation="MGSFSLTHWIIVLIIVVLIFGTKKLRNVGKDLGGAVHDFKQGLN
                     EGTDGKEAQKDDVIEHKKDEDKA"
     gene            2385..3071
                     /gene="tatB"
                     /locus_tag="WHR98_000675"
     CDS             2385..3071
                     /gene="tatB"
                     /locus_tag="WHR98_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatB"
                     /protein_id="HEZ2307382.1"
                     /translation="MFDFGLGELVFVGIIALIVLGPERLPEAARTAGRLIGRLQRFVG
                     SVKQEFDTQIELEELRKAKQEFEAAAAQVRDSLKETGTDMEGNLHDISDGLKPWEKLP
                     EQRTPADFGVDENGNPLPDAANTLSDGISDVMPSERSYASAETLGDSGQTGSTAEPAE
                     TDQDRAWREYLTASAAAPVVQTVEVSYIDTAVETPVPHTTSLRKQAISRKRDFRPKHR
                     AKPKLRVRKS"
     gene            3085..3855
                     /gene="tatC"
                     /locus_tag="WHR98_000676"
     CDS             3085..3855
                     /gene="tatC"
                     /locus_tag="WHR98_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEZ2307383.1"
                     /translation="MSETQNEQPVQPLVEHLIELRRRLMWTVVGILVCFFGLMPFAQQ
                     LYTFIADPLMANLPKDTSMIATDVIAPFFVPVKVTLMAAFLISLPHTLYQIWAFVAPA
                     LYQNEKRLITPLVLSSVSLFFIGMAFAYFLVFPVIFKFLAGVTPVGVNMATDIDKYLS
                     FILGMFVAFGTTFEVPIVVILLTKIGVVTTGQLKRARPYVIVGAFVIAAIITPPDVIS
                     QTLLAIPLILLYEAGIWFGRFFTPRSEQDGDIQPPATT"
     gene            3908..4513
                     /gene="maf"
                     /locus_tag="WHR98_000677"
     CDS             3908..4513
                     /gene="maf"
                     /locus_tag="WHR98_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEZ2307384.1"
                     /translation="MNTLYLGSNSPRRMEILTQLGYRVIQLPAGIDESVKAGETPFAY
                     VQRMAEEKNRTALPLFCETNGTMPDFPLITADTCVVSDGIILGKPRSQAEAIEFLNRL
                     SGKQHTVLTAVCIHYRGKTSSRVQTNRVVFKPLSSEEISAYVQSGEPMDKAGAYAVQG
                     IGGIFIQSIEGSFSGIMGLPVYETVSMLQDLGYRTPPFIRA"
     gene            4529..4882
                     /locus_tag="WHR98_000678"
     CDS             4529..4882
                     /locus_tag="WHR98_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2069 domain-containing protein"
                     /protein_id="HEZ2307385.1"
                     /translation="MNRQTAYLLTSFSLIALIILSLSWELWIAPLRPGGSWLALKALP
                     LCLPLSGILKKKIYTYQYSSMLVLIYFAEAVMRLFDAYPAEQICAALSAVFSIIFFIS
                     CLSFVKQYKETNNAR"
     gene            4872..6686
                     /locus_tag="WHR98_000679"
     CDS             4872..6686
                     /locus_tag="WHR98_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase C-terminal domain-containing
                     protein"
                     /protein_id="HEZ2307386.1"
                     /translation="MPAETTVSGAHPAAKLPIYILPCFLWIGIVPFTFALKLKPSPDF
                     YHDAAAAAGLIVLLFLTAGKKLFDVKIPAISFLLFAMAAFWYLQARLMNLIYPGMNDI
                     VSWIFILLAVSAWACRSLVAHFGQERIVTLFAWSLLIGSLLQSCIVVIQFAGWEDTPL
                     FQNIIVYSGQGVIGHIGQRNNLGHYLMWGILAAAYLNGQRKIPPALGAICLIMQTAVL
                     GLVNSRTILTYIAAIALILPFWYFRSDKSNRRTMLGIAAAVFLTALFQFSMNTILETF
                     TGIRYETAVERVANGGFTDLPRQIEWNKALAAFQSAPIFGHGWNSFAQQTFLINAEQH
                     NIYDNLLSNLFTHSHNIVLQLLAEMGISGTLLVAATLLTGIAGLLKRPLTPASLFLIC
                     TLAVSMCHSMLEYPLWYVYFLIPFGLMLFLSPAEASDGIAFKKAANLGILTASAAIFA
                     GLLHLDWTYTRLVNAFSPATDDSAKTLNRKINELRYISANSPMLSFYADFSLVNFALP
                     EYPETQTWAEEATLKSLKYRPHSATYRIALYLMRQGKVAEAKQWMRATQSYYPYLMPR
                     YADEIRKLPVWAPLLPELLKDCKAFAAAPGHPEAKPCK"
     gene            6876..7553
                     /locus_tag="WHR98_000680"
     CDS             6876..7553
                     /locus_tag="WHR98_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEZ2307387.1"
                     /translation="MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSG
                     QYDVVVLDSMMPKMNGLDVLKNVRARSTVPIIMLTAKGDDIDRIIGLEMGADDYVPKP
                     CTPRELLARINAILRRAQHSGEQNNAPNSISVSDVVLYPAKRQASVKDMPLELTSTEF
                     NLLEVLMRHAGQVVSKETLSVEALDRKLAKFDRSIDVHISSIRHKLGDASLIQTVRGL
                     GYLFVKN"
     gene            7566..8972
                     /locus_tag="WHR98_000681"
     CDS             7566..8972
                     /locus_tag="WHR98_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEZ2307388.1"
                     /translation="MKLFQRIFATFCAVIVCAIFVASFSFWLVQNTLAENQFNQRRTI
                     ETTLMGSIISAFRARGDAGAREILTEWKDSPVSSGVYVIQGDEKKDILNRYIDSYTIE
                     RARLFAAGHPHSNLVHIEYDRFGEEYLFFTKDWDKLQARRLPSPLLIPGLPLAPIWHE
                     LIILSFIIIVGLLMAYILAGNIAKPIRILGNGMDRVANGELETRISQQVDDRDDELSH
                     LAIQFDKMVEKLEKLVAKERHLLHHVSHEMRSPLARMQAIVGLIQAQPQKQEQYLKRL
                     EGELTRMDTLAGELLTLSRLETSNMALEKESLKLLPFLGNLVEDNQSIAQKNGQTVTL
                     SADGKIPENTTILANESYLYRAFDNVIRNAVNYSPEGSTILINIGQDHKHWIIDVTDN
                     GPGVDEMQLPHIFTAFYRADSSANKPGTGLGLALTQHIIEQHCGKIIAENIKPNGLRM
                     RFILPKKKTGSKTEKSAN"
     gene            9090..11516
                     /locus_tag="WHR98_000682"
     CDS             9090..11516
                     /locus_tag="WHR98_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetate--CoA ligase family
                     protein/GNAT family N-acetyltransferase"
                     /protein_id="HEZ2307389.1"
                     /translation="MSAQTDPGYFFMPNHIILIGASERPYSLGERVLSNLLSTPFQGK
                     ITPVNPRHHTIAGLPAYTSLNKIPGNADLIIAVTLPDSYDTLFKTCRKKQLRHIILIQ
                     DWDSLSAAELHTAETAIRKHHGNGLNITACTTAGIQLPSLGLNISTQDGYAAGHTAIL
                     TGNAAVSRQIDNILNKLRQGTSRHISLHPGISPITSSDWLNRFGHSLHTKTAVLHHNP
                     EEDQRKLFSAIRQFTRHTPLILHITCRTTETDRAVLHCLARHCNFLISFNADDLEAAL
                     RAQLSDLPPLSRLDILSDTPAEWLNAHAPKTLALHFPNLPHHIRNGHLTGTPTPSICH
                     DIASRQLARPDTQAVLTILSPSGHEDYKKTARALIRLSEQTAKPLLVSSPFSDGITHF
                     DTPTQAIRTLSYRNTAAALKQAQLDIAPPQPCRLKTPQPQNIKKALAAANPSLLAEAL
                     HLPPCRHTTHNAVQLQFGSHPLYGDILTACCNGQTTAVLPPFTTLDSRHLARFAELDG
                     TQTLDQFLHTLTVIPEYRQHILGITLNLNGGQYSSDFILKTPETHDTPKRKNTGKAAQ
                     TLEHAAAKMQSAAAYLKHKNPTAAEFLRHTSEAAAELLGSKTETGAAVPNVLAPYPAA
                     HLKTLSLKNNTTVTITPLLPEDAEAKQQFVRSLSPEARYTRFMTHTNELPAATLARLC
                     NPDYHCEAAWTARDADSNIVAVVRHSRLNRNECEFGITLAEHMRGSGLAQKMMELIIQ
                     TAAQQGYRTMSADILKTNTPMIKLAEKSGFTLKESDTEKNLYRAYLNLAADKTTEKTN
                     KNLHTDHKIT"
     gene            11561..11806
                     /gene="rpsP"
                     /locus_tag="WHR98_000683"
     CDS             11561..11806
                     /gene="rpsP"
                     /locus_tag="WHR98_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEZ2307390.1"
                     /translation="MVVIRLARGGSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVAN
                     EKQERVRLNADRLNHWIAQGAQVSDSVAKLIKEQKAA"
     gene            11822..12331
                     /gene="rimM"
                     /locus_tag="WHR98_000684"
     CDS             11822..12331
                     /gene="rimM"
                     /locus_tag="WHR98_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEZ2307391.1"
                     /translation="MTDTQNRVAMGYIKGVFGIKGWLKIAANTEYSDSLLDYPEWHLV
                     KDGKTISVTLEAGKVVNSELQVKFEGINDRDLAFSLRGYTIEIPREAFAPTEEDEYYW
                     TDLVGMTVVNKDHTVLGKVSNLMETGANDVLMIDGEHGQILIPFVSQYIETVDTGSKT
                     ITADWGLDY"
     gene            12331..13080
                     /gene="trmD"
                     /locus_tag="WHR98_000685"
     CDS             12331..13080
                     /gene="trmD"
                     /locus_tag="WHR98_000685"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEZ2307392.1"
                     /translation="MLIQAVTIFPEMFDSITRYGVTGRANRQGIWQFEAVNPRKFADN
                     RLGYIDDRPFGGGPGMIMMAPPLHAAIEHAKAQSSQAAKVIYLSPQGKPLTHPKAAEL
                     AELPHLILLCGRYEGIDERLLQTSVDEEISIGDFVVSGGELPAMMLMDAVLRLVPGVL
                     GDMQSAEQDSFSSGILDCPHYTKPLEFQGMAVPEVLRSGNHGLIAEWRLEQSLRRTLE
                     RRPDLLEKRVLIPKESRLLETIRQEQREIQS"
     gene            13097..13462
                     /gene="rplS"
                     /locus_tag="WHR98_000686"
     CDS             13097..13462
                     /gene="rplS"
                     /locus_tag="WHR98_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEZ2307393.1"
                     /translation="MNLIQQLEQEEIARLNKEIPEFAPGDTVVVSVRVVEGTRSRLQA
                     YEGVVIARRNRGLNSNFIVRKISSGEGVERTFQLYSPTVEKIEVKRRGDVRRAKLYYL
                     RGLTGKAARIKEKLPARKG"
     gene            13482..13787
                     /locus_tag="WHR98_000687"
     CDS             13482..13787
                     /locus_tag="WHR98_000687"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307394.1"
                     /translation="MPSEPSDGISYCRNIRNGTAPKSTPLPAHPESPSEPNKIYRLNV
                     IQYHISHITINALPPSLSKPQIIMTPSLLLSGLTFRLILALIAVSLLWGVYFWAVSA"
     gene            13784..14509
                     /locus_tag="WHR98_000688"
     CDS             13784..14509
                     /locus_tag="WHR98_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010361246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEZ2307395.1"
                     /translation="MSIIVENLTVSYRRRPAVHHVDITFEEHSIWAVFGPNGAGKSTF
                     LKSLMGLQPIDTGSIRLDGLTRQNIAYLPQQSDIDRSQPMTVFDLAAMGLWYEIGFFK
                     GINTAQKQRVHEALERVGMQRFADRQIAYLSNGQFQRVLFARMLVQNAKFLLLDEPFN
                     AVDARTTYELLDVLQKCHCGGHAIIAVLHDYEQVRAYFPNTLLLAREKIAAGATETIL
                     TEPYLAQANAKMQLQESPEWCAS"
     gene            14533..15408
                     /locus_tag="WHR98_000689"
     CDS             14533..15408
                     /locus_tag="WHR98_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEZ2307396.1"
                     /translation="MNLYDLLLAPFAEFDFMRYALASVFCLSLSAAPVGVFLVMRRMS
                     LIGDALSHAVLPGAAVGYMFAGLSLPAMGLGGVAAGMLMALLAGLVSRFTTLKEDANF
                     AAFYLSSLAIGVVLVSKNGSSVDLLHLLFGSVLAVDIPALQLIAAVSTLTLLTLAVIY
                     RPLVLESIDPLFLKSVGGKGGLWHVLFLVLVVMNLVSGFQALGTLMSVGLMMLPAITA
                     RLWAKHMGALILLSVLTALLCGLSGLLISYHIEIPSGPAIILCCSVLYLFSVILGKEG
                     GILTKWLKNHRHHTT"
     gene            15485..16399
                     /locus_tag="WHR98_000690"
     CDS             15485..16399
                     /locus_tag="WHR98_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HEZ2307397.1"
                     /translation="MKHLKLTLIAALLTTAATAAPLPVVTSFSILGDVAKQIGGERVS
                     IQSLVGANQDTHAYHMTSGDIKKIRSAKLILLNGLGLEAADIQRAVKQSKVSYAEATK
                     GIQPLKAEEEGGHHHDHDHDHEGHHHDHGEFDPHVWNDPVLMSAYAQNVAEALIKADP
                     EGKVYYQQRLGNYQMQLKKLHSDAQAAFNAVPAAKRKVLTGHDAFSYMGKRYHIEFIA
                     PQGVSSEAEPSAKQVAAIIRQIKREGIKAVFTENIKDTRMVDRIAKETGVNVSGKLYS
                     DALGNAPADTYIGMYRHNIKALTNAMKQ"
BASE COUNT         4288 a         5302 c         3623 g         3286 t
ORIGIN      
        1 cgtctgaagc cgattcggtt ttcagacggc atcattattt gacctgacgc aaacagaaag
       61 ccttccgcgt gcttaaacac atctcttgta gtaaaatatc taaacagatt caactggaaa
      121 cggtcaggct tcttcacgcc attcccattt caaccgccgc ctgccagatt cagacggtat
      181 tcctacttga aaacaaggag cgttacaatg aaagcagcac gtttttacga taaaggcgac
      241 atccgcatcg aagacatccc cgaaccgacc gtcgcccccg gcactgtcgg catcaatgtc
      301 gcctggtgcg gcatctgcgg tactgacctg cacgaattca tggaaggccc gattttcatt
      361 ccgccttgcg gtcatccgca cccgatttcc ggcgagtccg cacccgtcac gatgggacac
      421 gagttctccg gcgtggtcta tgccgtcggc gaaggcgtgg acgacatcaa agtcggccaa
      481 cacgtcgtgg tcgaacccta catcatccgc gatgacgtac cgaccggaga aggcagcaac
      541 taccacctct ccaaagatat gaactttatc ggcttgggcg gctgcggcgg cggtctgtcc
      601 gaaaaaatcg ccgtcaaacg tcgttgggtg catccgattt ccgacaaaat cccgttggat
      661 caagccgctt tgatcgaacc gctgtctgtc ggacaccacg cctatgtacg cagcggcgcg
      721 aaagcaggcg acgtcgcatt ggtcggcggt gcaggtccga tcggtttgct gttggctgcc
      781 gtgttgaaag ccaaaggcat caaagtcatc atcaccgagt tgagtaaagc acgcaaagac
      841 aaagcgcgcg aatccggcgt tgccgactac atcctcgacc cgtccgaagt cgatgttgtc
      901 gaagaggtga aaaaactgac caacggcgaa ggcgtggacg tggcattcga atgtaccagc
      961 gtgaacaaag tgttggatac tttggtcgaa gcctgcaaac ctgccgccaa tttggttatc
     1021 gtatccatct ggagccaccc tgcaaccgtc aacgtccaca gcgtcgtgat gaaagagctg
     1081 gatgtgcgcg gcacgattgc ctactgtaac gaccacgccg aaaccatcaa actggtcgaa
     1141 gaaggcaaaa tcaacctcga acccttcatc acccagcgca tcaagctgga cgaactggtt
     1201 tccgaaggct tcgagcgtct gatccacaac aacgaatccg ccgttaaaat tattgtgagt
     1261 ccaaacctgt aagcaaatta catttgcaac agcacaaatg ccgtctgaaa cgctcagacg
     1321 gcattttcca acgaagcgca acaggcgtat tgcccgagag cagccgttta gcctatcatt
     1381 ccgaacaaac agaaacaaac agaaggaaaa tcatgggaga ttccgtacta tccgccatcc
     1441 aacaaaccat cacccagcga aaatctgcca atccgtccga atcttacgtc gcacagctct
     1501 tgcataaggg cgaagacaaa atcctaaaaa aagtgattga agaggcgggc gaagtgttga
     1561 tggcatccaa agacaaaaac ccgtcccacc tggtttacga agttgccgac ttatggtttc
     1621 acaccatgat tcttctgaca caccacgacc tgaaggcgga agacgtattg gacgaacttg
     1681 cgcgccgcca aggtttgtcg ggcttggccg aaaaagccgc tcgcacagaa tcttgaattt
     1741 atattaaaat ccgcactttc ccacattcaa tccgtctgac cgcttttcag acggcatcgg
     1801 agccgttatg gacaactgta ttttctgcaa aatcgccgcc aaagacattc cggcgcaaac
     1861 cgtctatgaa gacggcgaaa tggtttgttt caaagacatc aaccccgctg ctccggttca
     1921 tctgctgctg attcccaaag tccatttcga ttcgttggca cacgccgcgc ccgaacatca
     1981 gccccttttg ggaaaaatga tgctgaaagt tcccgaaatc gccaaagcgg caggactggc
     2041 agacggcttc aaaaccctga tcaacaccgg caaaggcggc ggacaagagg ttttccacct
     2101 gcatatacac atcatgggca cacccgtata aaccgttatt tcacaatcaa cccctaatac
     2161 ttacttaagg atacatcatg ggcagttttt ctctgacgca ctggattatc gtactgatta
     2221 tcgtcgtttt gatattcggc accaaaaaac tgcgcaacgt cggcaaagac ctcggcggtg
     2281 cggttcatga cttcaaacag gggctgaacg aaggtacaga cggcaaagaa gcccaaaaag
     2341 acgatgtaat cgaacacaaa aaagacgaag acaaagcgta atttatgttt gatttcggtt
     2401 tgggcgagct ggtttttgtc ggcattatcg ccctgattgt cctcggcccc gaacgcctgc
     2461 ccgaggccgc ccgcaccgcc ggacggctca tcggcaggct gcaacgcttt gtcggcagcg
     2521 tcaaacagga atttgacact caaatcgaac tggaagaact gaggaaggca aagcaggaat
     2581 ttgaagctgc cgccgctcag gttcgagaca gcctcaaaga aaccggtacg gatatggaag
     2641 gcaatctgca cgacatttcc gacggtctga agccttggga aaaactgccc gaacagcgga
     2701 cacctgccga tttcggtgtc gatgaaaacg gcaatccgct tcccgatgcg gcaaacaccc
     2761 tatcagacgg catttccgac gttatgccgt ccgaacgttc ctacgcttcc gccgaaaccc
     2821 ttggggacag cgggcaaacc ggcagtacag ccgaacccgc ggaaaccgac caagaccgcg
     2881 catggcggga atacctgact gcttctgccg ccgcacccgt cgtacagacc gtcgaagtca
     2941 gctatatcga taccgctgtt gaaacccctg ttccgcatac cacttccctg cgcaaacagg
     3001 caataagccg caaacgcgat tttcgtccga aacaccgcgc caaacctaaa ttgcgcgtcc
     3061 gtaaatcata aagagagcaa tccggtgtcc gaaacacaaa acgaacaacc cgtccaaccg
     3121 cttgtcgagc atctcatcga gctgcgccgc cgcctgatgt ggacggttgt cggcatctta
     3181 gtctgctttt tcggcctaat gccgtttgcc caacaactct atacttttat cgccgacccg
     3241 ctgatggcaa acctgcccaa agacaccagc atgattgcca cagatgtcat cgcaccgttt
     3301 ttcgttccgg tcaaagttac cctgatggcg gcatttttaa tttcgctgcc gcatacgctc
     3361 taccaaatct gggcatttgt cgcccccgca ctctaccaaa acgaaaaacg cctgattacg
     3421 ccgctcgtcc tctccagcgt cagcctgttt ttcatcggta tggcatttgc ctactttttg
     3481 gttttccccg tcattttcaa attccttgcc ggcgttaccc ctgtcggggt caatatggcg
     3541 acagacatcg acaaatacct ctccttcatc ttggggatgt ttgtcgcatt cggtacaacg
     3601 tttgaagtcc ccattgtcgt tatcctgtta accaaaattg gtgtggtaac aaccggacag
     3661 ctcaaacgcg cccgccccta tgtgattgtc ggcgcgtttg tcattgccgc catcatcacg
     3721 ccgcccgatg tgatttcaca aaccctgctt gccattccgc tgattctctt atacgaagca
     3781 ggtatttggt tcggacgctt tttcacgcca cgttcagaac aggatggcga catacagccg
     3841 cctgcaacaa cctgacacta tgccgtccga acctccgcct cataccgcca cagattaagg
     3901 aatacctttg aataccctct atttaggttc aaacagcccg cgccgaatgg aaatcctgac
     3961 gcagttgggc taccgcgtca tccaactgcc cgccggcatc gacgaatccg ttaaagccgg
     4021 cgaaacacct ttcgcttacg ttcaaaggat ggcagaagaa aaaaaccgaa ccgccctgcc
     4081 cctcttttgc gaaaccaacg gcacaatgcc cgattttccc ctgattaccg ccgacacctg
     4141 cgtcgtttca gacggcatca tattaggcaa accccgctcc caagccgaag caatcgaatt
     4201 tttaaaccga ttgtccggca aacaacatac cgtcctgact gctgtctgca ttcattatcg
     4261 cggcaaaacg tcaagccgcg tccaaaccaa ccgcgtcgtt ttcaagcccc tgagttcgga
     4321 agaaatttcc gcctatgtgc aaagcggcga accgatggac aaagccggcg cctacgccgt
     4381 acaaggcata ggcggcatct ttatccaatc tatcgaaggc agcttcagcg gcattatggg
     4441 gctgcccgtt tatgaaaccg tttcgatgtt gcaggatttg ggataccgta ccccaccttt
     4501 catccgagcc taacccgtaa agaccgccgt gaacagacaa accgcttacc tccttacctc
     4561 tttcagcctg atcgcactga taatcctgtc cctttcctgg gaactgtgga ttgcaccgtt
     4621 gcgcccgggc ggctcgtggc tcgcgctcaa agccctcccc ctctgtctgc cgctttcagg
     4681 catcttgaaa aagaaaatct atacctacca atacagctcc atgctggttc tgatttactt
     4741 tgccgaagcc gtcatgcgcc tgttcgacgc ctatcccgca gaacagattt gcgccgcgct
     4801 ttccgcagta ttcagcatca tcttcttcat atcctgcctg tcgttcgtca aacaatacaa
     4861 ggaaacaaac aatgcccgct gaaacgaccg tatccggcgc gcaccccgcc gccaaactgc
     4921 cgatttacat cctgccctgc ttcctttgga taggcatcgt cccctttacc ttcgcgctca
     4981 aactgaaacc gtcgcccgac ttttaccacg atgccgccgc cgcagccgga ctgattgtcc
     5041 tgttgttcct cacggcagga aaaaaactgt ttgatgtcaa aatccccgcc atcagcttcc
     5101 ttctgtttgc aatggcggcg ttttggtatc ttcaggcacg cctgatgaac ctgatttacc
     5161 ccggtatgaa cgacatcgtc tcttggattt tcatcttgct cgccgtcagc gcgtgggcct
     5221 gccggagctt ggtcgcacac ttcggacaag aacgcatcgt taccctgttt gcctggtcgc
     5281 tgcttatcgg ctccctgctt caatcctgca tcgtcgtcat ccagtttgcc ggctgggaag
     5341 acacccctct gtttcaaaac atcattgttt acagcgggca aggcgtaatc ggacacatcg
     5401 gacagcgcaa caacctcgga cactacctca tgtggggcat actcgccgcc gcctacctca
     5461 acggacaacg aaaaatcccg cccgccttgg gtgcaatctg cctgattatg cagaccgccg
     5521 ttttaggttt ggtcaattcg cgcaccatct tgacctacat agccgccatc gccctcatcc
     5581 ttcccttctg gtatttccgt tcggacaaat ccaacaggcg gacgatgctc ggcatagccg
     5641 cagccgtatt ccttaccgcg ctgttccaat tttccatgaa caccattctg gaaaccttta
     5701 ccggcatccg ctacgaaact gccgtcgaac gcgttgccaa cggcggtttc acagacttgc
     5761 cgcgccaaat cgaatggaat aaagcccttg ccgccttcca gtccgccccg atattcgggc
     5821 acggctggaa cagttttgcc caacaaacct tcctcatcaa tgccgaacag cacaacatat
     5881 acgacaacct cctcagcaac ttgttcaccc attcccacaa catcgtcctc caactccttg
     5941 cagagatggg aatcagcggc acgcttctgg ttgccgcaac cctgctgacg ggcattgccg
     6001 ggctgcttaa acgccccctg acccccgcat cgcttttcct aatctgcacg cttgccgtca
     6061 gtatgtgcca cagtatgctc gaatatcctt tatggtatgt ctatttcctc atccccttcg
     6121 gactgatgct cttcctgtcc cccgcagagg cttcagacgg catcgccttc aaaaaagccg
     6181 ccaatctcgg catactgacc gcctccgccg ccatattcgc aggattgctg cacttggact
     6241 ggacatacac ccggctggtt aacgcctttt cccccgccac tgacgacagt gccaaaaccc
     6301 tcaaccggaa aatcaacgag ttgcgctata tttccgcaaa cagtccgatg ctgtcctttt
     6361 atgccgactt ctccctcgta aacttcgccc taccggaata ccccgaaacc cagacttggg
     6421 cggaagaagc aaccctcaaa tcactaaaat accgccccca ctccgccacc taccgcatcg
     6481 ccctctacct gatgcggcaa ggcaaagttg cagaagcaaa acaatggatg cgggcgacac
     6541 agtcctatta cccctacctg atgccccgat acgccgacga aatccgcaaa ctgcccgtat
     6601 gggcgccgct gctacccgaa ctgctcaaag actgcaaagc cttcgccgcc gcgcccggtc
     6661 atccggaagc aaaaccctgc aaatgacccg cgccggcgga tgcggatacc gcccgaaatg
     6721 taaagctcca tgcaagacat tgcaaaaaac agcaaaccgg tagggaaata cgctatcaaa
     6781 aaacattgca gccgtgttaa gataaaccgt caaacaatct tttcacgccc cgcccgaaac
     6841 agggtcgggg cataccctta cgaaaaggaa acaccatgag ccgcgtatta ctcgtagatg
     6901 acgatgccct gctaaccgaa ctgctgaccg aatacctgag cgccgaaggt ctgaacgtcc
     6961 gcagcgttcc cgacggggaa gcaggcgtac aggaaatcct gagcgggcag tacgatgtag
     7021 tcgtattgga ttccatgatg cccaaaatga acggcttgga tgtcttgaaa aacgtacgcg
     7081 cccgaagcac cgtccccatc atcatgctga ccgccaaagg cgacgacatc gaccgaatca
     7141 tcggcttgga aatgggcgcg gacgactatg tccccaaacc ctgcacacca cgcgaactct
     7201 tggcacgcat caatgccatc ctgcgccgcg cacaacacag cggcgaacag aacaacgcac
     7261 ccaacagcat ctccgtcagc gatgtcgtcc tgtaccccgc caaacgccag gcatccgtca
     7321 aagacatgcc gctcgaactg accagcaccg aattcaacct gctcgaagtc ctgatgcgcc
     7381 atgccggaca ggtagtcagc aaagaaaccc tgtccgtcga agcactcgac cgcaagctgg
     7441 caaaattcga ccgcagtatc gacgtacaca tctccagcat ccgccacaag ttgggcgatg
     7501 cctctctgat tcaaaccgta cgcggcttgg gctacctgtt tgtcaaaaac tgaagcaacg
     7561 ggcaaatgaa actgttccaa cgcatcttcg ccacattttg cgcggttatc gtctgtgcaa
     7621 tctttgtggc gagtttttct ttttggctgg tgcagaacac ccttgccgaa aaccagttca
     7681 accaacgccg caccatcgaa accactttga tgggcagcat catttccgca ttccgggcac
     7741 gcggggacgc gggcgcgcgc gaaatcctga cggaatggaa agacagcccc gtctcatcgg
     7801 gcgtgtacgt tatacagggc gacgagaaaa aagatatcct gaaccggtat atcgacagct
     7861 ataccatcga acgcgcccgg cttttcgccg ccggacaccc gcattccaac ctcgtccata
     7921 tcgaatacga ccgcttcggc gaagaatacc tgttcttcac caaagactgg gacaaactcc
     7981 aagcccgccg cctgcccagc cccctgttga tccccggcct gccgctcgcc ccgatttggc
     8041 acgaactcat catattgtcc ttcatcatca tcgtcggact gctgatggca tatatcctcg
     8101 ccggcaacat tgccaaaccc atcagaatct taggcaacgg catggacagg gtggcaaacg
     8161 gagaacttga aacccgtatc tcccaacagg tcgacgaccg cgacgacgaa ttgtcccatc
     8221 ttgccatcca attcgacaaa atggtggaaa aactcgaaaa actcgttgcc aaagaacgcc
     8281 acctgctcca tcacgtctcc catgaaatgc gttctcccct tgcgcgcatg caggcaattg
     8341 tcggactgat tcaggcgcag ccccaaaaac aggagcaata tctcaaacgg ctggaaggcg
     8401 aactgacccg catggatacg ctggccgggg aactgttaac cctgtcccgt ctcgaaactt
     8461 ccaatatggc tttggaaaaa gaaagcctga aactcctgcc cttcctgggc aacctggtag
     8521 aagacaatca aagcattgcc cagaaaaacg gacaaacggt taccctgtct gccgacggaa
     8581 aaatccccga aaatacaacc atccttgcca acgaaagcta cctgtaccgc gccttcgaca
     8641 acgtcatccg caacgccgtc aactacagtc ccgaaggcag caccatcctg atcaacatcg
     8701 gacaagacca caaacactgg atcatcgacg ttaccgacaa cggccccggc gtggacgaaa
     8761 tgcagctccc gcacatcttc accgctttct accgtgcaga ctccagtgcg aacaaacccg
     8821 gaacaggact ggggcttgca ttgacccaac atattattga acagcactgc ggaaaaatca
     8881 tcgccgaaaa catcaaaccg aacggtctgc ggatgcgctt catcctgccc aagaaaaaaa
     8941 ccggttccaa aacagaaaaa agtgcgaact gaccataatg ccgtctgaac cggcttcaga
     9001 cggcattgca caaacagtta ccccaaaaca aacacacagc gggtgcatct ccaacaatca
     9061 cgcacatacc gtccgcaaag gaatatatca tgtcggcaca aaccgatccg ggctactttt
     9121 tcatgcccaa ccacattatt ctgataggcg cgagcgaacg tccgtacagc ctgggcgaac
     9181 gcgtactcag caacctgctg agtacgccct ttcaaggaaa aatcaccccc gtaaacccgc
     9241 gccaccacac catagccggg cttcccgcct acaccagcct caacaaaatc cccggcaatg
     9301 cagacctgat tattgccgtt accctacccg acagttacga caccctcttc aaaacctgcc
     9361 gcaaaaagca gctccgacac atcatcctca tacaggactg ggacagcctg tctgccgcag
     9421 aactgcacac cgccgaaact gccatccgca aacaccacgg caacggactc aacatcaccg
     9481 cctgcaccac cgcaggcatc caactgccct cactcggact taacatcagt acccaagacg
     9541 gatacgccgc aggccatacc gccatactga ccggcaatgc cgccgtcagc cgccaaatcg
     9601 acaacatcct gaacaaactc cgtcaaggca catcccgcca catcagcctg catcccggca
     9661 tcagccccat cacttcctca gactggctca accgcttcgg ccacagcctg cacaccaaaa
     9721 ccgccgtcct acaccacaac cctgaagagg atcagcgcaa actgttcagc gcaatccgcc
     9781 aatttacccg ccatacgccg ctgattctcc acatcacctg ccgcacgaca gaaaccgacc
     9841 gtgccgtact gcactgcctc gcccgacact gcaacttcct catcagtttc aacgccgacg
     9901 accttgaagc cgcactgcgc gcccaactgt ccgaccttcc acccctgtcc cgactcgaca
     9961 tcctgtccga cacgcctgcc gaatggctga acgcgcacgc gccaaaaacc ctcgccctcc
    10021 actttcccaa ccttccccac cacatccgca acggacacct gaccggcaca cccacaccct
    10081 caatctgcca cgacatcgcc tcacgtcagc ttgcccgccc cgacacccaa gccgtcctga
    10141 ccatcctcag cccctccgga cacgaggatt acaaaaaaac agcacgcgcc cttatccgcc
    10201 tgtccgaaca gaccgccaaa cccctgctcg tcagcagccc cttttcagac ggcataaccc
    10261 atttcgacac ccccactcag gcaatccgca ccctttccta ccgcaacacc gccgccgccc
    10321 tgaaacaggc acagctcgac attgcaccgc cgcagccatg ccgtctgaaa acaccgcaac
    10381 cccaaaacat caaaaaagcc cttgcagcgg caaatccctc cctgctcgcc gaagccctgc
    10441 acctcccccc ctgccggcac actacccata acgccgtcca actccaattc ggcagccacc
    10501 ccctctatgg cgacatcctg accgcatgct gcaacggaca aaccactgcc gtactcccgc
    10561 cgtttaccac gctcgacagc cgccaccttg cccgctttgc cgaactcgac ggcacacaaa
    10621 ccctcgacca gttcctgcac acactgaccg tcattcccga ataccgccaa cacattctcg
    10681 gcatcaccct caacctcaac ggcggacaat acagcagcga tttcatctta aagacacccg
    10741 aaacacacga cacgcccaaa cgcaagaaca caggcaaagc cgcccaaacc ctcgaacatg
    10801 ccgccgcaaa aatgcagagt gccgccgcat acctgaaaca caaaaacccg acagccgccg
    10861 aatttctccg ccacacaagc gaagccgccg cagaactgct cggcagcaaa accgaaaccg
    10921 gagcagccgt acccaacgta cttgccccct atcccgcagc acacctcaaa acactgtccc
    10981 taaaaaacaa cacgaccgtt accattaccc cccttttgcc cgaagacgca gaagccaaac
    11041 agcagttcgt ccgcagcctc agccccgaag cacggtacac acgcttcatg acccacacca
    11101 acgaactgcc cgcagccacg ttggcacgcc tgtgcaaccc cgactaccac tgtgaagccg
    11161 catggacggc aagggatgcc gacagcaaca tcgtcgccgt cgtccgccac agccgcctga
    11221 accgcaacga atgcgaattc ggcatcacac tggcggaaca tatgcgcggc agcggactgg
    11281 cacagaaaat gatggaactc atcatccaaa ccgccgcaca gcaaggctac cggactatga
    11341 gtgccgacat tctcaaaacc aatactccca tgatcaaact tgctgaaaaa tcaggattta
    11401 ccctcaagga atcggacacc gaaaaaaacc tgtaccgcgc atatctgaac cttgcggcag
    11461 acaaaacaac agaaaaaaca aataaaaact tgcacaccga ccacaaaata acctaaaatc
    11521 ggcagtttcc atatatccga ttttctcaaa aggactcaaa atggtagtta tccgtttggc
    11581 acgcggcggc tcgaaacacc gccctttcta caacgtcatc gttactgact cacgcagccg
    11641 ccgcgacggc cgcttcatcg aacgcgtagg cttctacaac cccgtagcca acgaaaaaca
    11701 agagcgcgtc cgcctcaacg cagaccgcct gaaccactgg attgcacaag gcgcgcaagt
    11761 cagcgactcc gttgcaaaac tgattaaaga acaaaaagcc gcctaatcca catttgccgc
    11821 catgacagac actcaaaacc gggtagccat gggctacatc aaaggcgtat tcggcataaa
    11881 aggctggttg aaaattgccg ccaacaccga atattccgac agccttttgg actaccccga
    11941 gtggcatttg gtcaaggacg gcaaaaccat cagcgttacc cttgaagccg gaaaagtcgt
    12001 caacagcgaa ctccaagtca aattcgaagg cataaacgac cgcgacttgg cattctcatt
    12061 gcgcggttac accatcgaaa taccccgtga agcattcgcc ccgacagaag aagacgaata
    12121 ctactggaca gacttggtcg gcatgaccgt cgtcaacaaa gaccataccg ttttaggcaa
    12181 ggtaagcaac ctgatggaaa ccggcgcaaa cgacgtattg atgattgacg gagaacacgg
    12241 gcagattctg attccgttcg tttcccaata tatcgaaacc gtcgataccg gcagcaagac
    12301 cattactgcc gactggggtt tggactactg atgcttatcc aggcagttac cattttcccc
    12361 gaaatgttcg acagcattac ccgctacggc gtaacgggac gcgcgaacag acagggaatc
    12421 tggcagtttg aagcagtcaa tccccgaaag tttgccgaca acagattggg ctacatcgac
    12481 gaccgcccgt tcggcggcgg cccgggaatg attatgatgg ctccgccgct tcatgcagca
    12541 atagaacacg ccaaagcaca atcttcccaa gctgcaaaag tcatttacct cagcccccaa
    12601 ggaaaaccgc tgacacaccc aaaagcggca gaactggcag aacttccgca tctgattctg
    12661 ctgtgcggac gctatgaggg aatagacgaa agactgctgc aaaccagcgt cgatgaagaa
    12721 atcagcatcg gagacttcgt tgtttccggc ggagagcttc ccgccatgat gctgatggat
    12781 gcggtattga ggctcgtacc cggcgtattg ggcgatatgc agtctgccga acaagattcg
    12841 ttctcaagcg gcattttgga ctgcccccac tacaccaaac ccttagaatt tcaaggcatg
    12901 gctgttccgg aagtattacg ttccggcaat catggcttga tagcggaatg gcggttggaa
    12961 caatcgctgc gccgcacctt ggagcgcaga cccgatcttt tggaaaagcg cgttttaatc
    13021 ccaaaggaat cccgcctctt agaaaccatc cggcaagagc aacgggaaat ccaatcataa
    13081 tttaggaaaa aaaacaatga acctgattca acagctcgag caagaagaaa ttgcccgcct
    13141 gaataaagaa atccccgaat tcgcaccggg cgacaccgta gtcgtatccg tacgcgtcgt
    13201 ggaaggtacc cgcagccgtc tgcaagccta cgaaggcgtt gtcattgcac gccgcaaccg
    13261 tggtctgaac agcaacttca tcgtccgcaa aatctccagc ggcgaaggcg ttgaacgtac
    13321 tttccaactg tactctccga ccgtcgaaaa aatcgaagtc aaacgccgtg gcgacgtacg
    13381 ccgtgccaaa ctgtactacc tgcgcggtct gaccggcaaa gctgcacgca tcaaagaaaa
    13441 actgcctgca cgcaaaggtt gattcaaacc cgttttcccc aatgccgtct gaaccttcag
    13501 acggcatttc ttattgccgc aacatccgca acggaacagc accaaaaagc acaccccttc
    13561 cggcacatcc cgaatccccg tccgaaccga acaaaattta cagactaaac gttatacagt
    13621 atcatatcag ccatataacg ataaacgctt taccgccttc cctttcaaaa ccgcaaatca
    13681 tcatgacacc ttccctttta ctatcaggat tgaccttccg cctcatcctt gccctgattg
    13741 ccgtatccct tttatggggc gtttactttt gggcagtatc cgcatgagca tcattgtcga
    13801 aaacctgacc gtcagctacc gccgccgacc tgccgtgcac catgtggaca ttacttttga
    13861 agaacatagt atatgggcgg ttttcggtcc caacggcgca gggaaatcca cctttctcaa
    13921 atccttgatg ggattgcagc ctatcgatac aggcagcatc cggctggacg gattgacccg
    13981 tcagaacatc gcctaccttc cccagcagtc cgatatcgac cgctcccagc ctatgaccgt
    14041 tttcgacttg gcggcaatgg ggctatggta tgaaatcggc tttttcaaag ggataaatac
    14101 cgctcaaaaa caacgcgttc acgaagcctt ggagcgcgtc ggaatgcaac ggtttgccga
    14161 ccgtcagatt gcctatctct caaacggaca atttcagcgt gtcctttttg cccgaatgct
    14221 ggttcaaaat gccaaattcc tgctgctcga cgaacccttc aatgccgttg atgcacggac
    14281 aacctacgag cttctcgacg tattgcagaa atgccattgc ggcggacacg ccatcatcgc
    14341 cgtactgcac gattacgaac aagtccgcgc ctactttccc aataccctgc tgctcgcccg
    14401 cgaaaaaatt gcggcaggcg caaccgagac cattctgaca gaaccctacc tcgcccaagc
    14461 caacgccaaa atgcagctac aggaaagccc cgagtggtgc gcgtcataaa tgccgtctga
    14521 aaccgaaaaa ccatgaacct ctacgacctg ctccttgccc cctttgcaga attcgacttt
    14581 atgcgctacg ccctcgcatc cgtcttctgc ctgtccctca gtgccgcacc cgtcggcgta
    14641 ttcctcgtca tgcgccgtat gagcctgata ggcgacgcat tgagccacgc cgtcctgccc
    14701 ggtgccgccg tcggctacat gtttgccggc ttgagcctgc ccgccatggg tttgggcggc
    14761 gtagccgcag gcatgctgat ggcactgctt gccggacttg ttagccgctt caccaccctg
    14821 aaagaagatg ccaactttgc cgccttttat ctcagcagcc tcgccatagg cgtagtcctc
    14881 gtcagcaaaa acggcagcag cgtcgatctg ctgcatctgc ttttcggctc tgtacttgcc
    14941 gtcgatattc ctgccctgca gctcatcgcc gccgtatcca ccctcacact gcttaccctt
    15001 gccgtcatct accgcccgct cgtactcgaa agcatcgacc ccctgtttct caaatctgtc
    15061 ggcggcaaag gcgggctttg gcacgtcctc tttctcgtcc tggtcgtcat gaacctcgta
    15121 tccggctttc aagccctcgg cacactcatg tccgtcggac tcatgatgct gccagccatt
    15181 accgcccgcc tgtgggcgaa gcacatgggc gcactcatcc tcctatccgt tctgacagcc
    15241 ctgctgtgcg gcttgagcgg gctgctcatt tcctaccaca tcgaaatccc ttccggcccc
    15301 gccatcatcc tctgttgcag cgtcctttat ctcttttccg tcatactcgg caaagaaggc
    15361 ggcattctga ccaaatggct caaaaaccac cgccaccaca ccacctgacc ccgcaagccg
    15421 cttgaacaaa caggcggctt gttttaccat aacagatgtt acgttatatc acaggagaac
    15481 agttatgaaa cacctcaaac tcacccttat tgccgcattg ctgaccactg ccgcaactgc
    15541 cgcccccctt ccggttgtaa ccagtttcag cattttaggc gacgttgcca aacaaatcgg
    15601 cggagagcgc gtatccatac aaagtttggt cggagccaac caagatactc atgcctatca
    15661 catgaccagt ggcgacatta aaaaaatccg cagtgcaaaa ctcatcctgc tcaacggctt
    15721 aggacttgaa gccgccgaca tccaacgtgc cgtcaaacag agcaaagtat cctatgccga
    15781 agcgaccaaa ggcatccaac ccctcaaagc cgaagaagaa ggcggacacc atcatgacca
    15841 cgaccatgac cacgaaggac accaccatga ccacggcgaa tttgacccgc acgtctggaa
    15901 cgaccccgtc ctcatgtccg cctatgccca aaacgtcgcc gaagccctga taaaggccga
    15961 ccccgaaggc aaagtttatt atcaacaacg cttgggcaac taccaaatgc agctcaaaaa
    16021 actgcacagc gacgcacaag ccgcatttaa cgccgtccct gccgccaaac gcaaagtcct
    16081 gaccgggcac gatgcctttt cctacatggg caaacgttac catatcgaat tcatcgcccc
    16141 gcaaggtgtg agcagcgaag ccgagccttc agccaaacaa gtcgccgcca tcatccgaca
    16201 aatcaaacgc gaaggcatca aagccgtatt caccgaaaat atcaaagaca cccgcatggt
    16261 tgaccgtatc gccaaagaaa ccggcgtcaa cgtcagcggc aaactgtatt ccgacgcact
    16321 cggcaacgcg cccgcagaca cctacatcgg aatgtaccgc cacaacatca aagccttgac
    16381 caacgcgatg aagcaataaa accgtttgat tggtttgaat ttgaaaaggc aaaaggccgt
    16441 ctgaaaatta tagtggatta acaaaaatca ggacaaggcg acgaagccgc agatagtac
//
LOCUS       DAWGNT010000029        16303 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.029, whole genome shotgun sequence.
ACCESSION   DAWGNT010000029 DAWGNT010000000
VERSION     DAWGNT010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 16303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16303
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.029"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(547..1131)
                     /gene="rnhB"
                     /locus_tag="WHR98_000691"
     CDS             complement(547..1131)
                     /gene="rnhB"
                     /locus_tag="WHR98_000691"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEZ2307398.1"
                     /translation="MHILTAGVDEAGRGPLVGSVFAAAVILPETFDLPGLTDSKKLSE
                     KKRDTLAEMIKDQAAAWHVAAATPEEIASLNILHATMLAMKRAVDGLVVHPEKIFIDG
                     NRIPEHLGIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYG
                     TKQHLEALKQYGVLPEHRRDFAPVRNLLAQQALF"
     gene            complement(1199..3094)
                     /gene="mnmG"
                     /locus_tag="WHR98_000692"
     CDS             complement(1199..3094)
                     /gene="mnmG"
                     /locus_tag="WHR98_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEZ2307399.1"
                     /translation="MTHMIYPKTYDVIVVGGGHAGTEAALAAARMGAQTLLLTHNIET
                     LGQMSCNPSIGGIGKGHLVRELDALGGAMALATDKSGIQFRRLNASKGAAVRATRAQA
                     DRILYKAAIREMLENQENLDLFQQAVEDVTLDGDRISGVITAMGVEFKARAVVLTAGT
                     FLSGKIHIGLENYEGGRAGDPAAKSLGGRLRELKLPQGRLKTGTPPRIDGRTIDFSQL
                     TEQPGDTPVPVMSVRGNAEMHPRQVSCWITHTNTQTHDIIRSGFDRSPMFTGKIEGVG
                     PRYCPSIEDKINRFADKDSHQIFLEPEGLTTYEYYPNGISTSLPFDIQIALVRSMKGL
                     ENAHILRPGYAIEYDYFDPRNLKASLETKTIEGLFFAGQINGTTGYEEAAAQGLLAGA
                     NAVQYVRGQDPLLLRREQAYLGVLVDDLITKGVNEPYRMFTSRAEYRLQLREDNADMR
                     LTEDGYKIGLVGEAQWRMFNEKREAVEREIQRLKTTWYTPQKLAEDEQIRVFGQKLSR
                     EANLHDLLRRPNLDYAALMTLEGAMPSENLSAEVIEQVEIQVKYQGYIDRQNEEIDSR
                     RDIETLKLPDGIDYGKVKGLSAEVQQKLNQHKPETVGQASRISGVTPAAVALLMVHLK
                     RGFKDAK"
     gene            complement(3419..4846)
                     /locus_tag="WHR98_000693"
     CDS             complement(3419..4846)
                     /locus_tag="WHR98_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEZ2307400.1"
                     /translation="MNENFTEWLHGWVGAINDPMWSYLVYMLLGTGLFFTVTTGFVQF
                     RLFGRSIKEMLGGRKQGDDPHGITPFQAFVTGLASRVGVGNIAGVAIAIKVGGPGAVF
                     WMWVTALIGMSSAFVESSLAQLFKVRDYDNHHFRGGPAYYITQGLGQKWLGVLFALSL
                     IFCFGFVFEAVQTNTIADTVKAAWGWEPHYVGVALVILTAPIIFGGIRRISKAAEIVV
                     PLMAVLYLFIALFIILTNIPMIPDVFGQIFSGAFKFDAAAGGLLGGLISQTMMMGIKR
                     GLYSNEAGMGSAPNAAAAAEVKHPVSQGMIQMLGVFVDTIIVCSCTAFIILIYQQPYG
                     DLSGAALTQAAIVSQVGQWGAGFLAVILFMFAFSTVIGNYAYAESNVQFIKSHWLITA
                     VFRMLVLAWVYFGAVANVPLVWDMADMAMGIMAWINLVAILLLSPLAFMLLRDYTAKL
                     KMGKDPEFKLSEHPGLKRRIKSDVW"
     gene            5006..5995
                     /gene="pdxA"
                     /locus_tag="WHR98_000694"
     CDS             5006..5995
                     /gene="pdxA"
                     /locus_tag="WHR98_000694"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HEZ2307401.1"
                     /translation="MKQPVFAVTSGEPAGIGPDICLDLAFARLPCRCAVLGDKNLLRA
                     RAEALGKSVVLRDFDPESGGAAYGELEVLHIPAAEAVEAGRLNPANAAYVLQLLDTAL
                     AGISDGIFDGIVTAPLHKGIINDARASTGFFSGHTEYLAEKSGTGQVVMMLAGKDLRV
                     ALVTTHLPLKDVAAAITQPLIESVARILHHDLKHKFGIKNPKILVAGLNPHAGEGGHL
                     GHEETDTIIPALENLRREGINLAGPYPADTLFQPFMLEGADAVLAMYHDQGLPVLKYH
                     SFGQGVNITLGLPFIRTSVDHGTALDLAATGRADSGSLITAVETAVEMARGSL"
     gene            complement(6662..9421)
                     /locus_tag="WHR98_000695"
     CDS             complement(6662..9421)
                     /locus_tag="WHR98_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HEZ2307402.1"
                     /translation="MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKG
                     IITRIEPSLEACFVDYGTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQV
                     EKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAQLDIPN
                     GMSIIARTAGIGRSAEELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRD
                     YFRPDIGEILVDNQEVYDQVAEFMSYVMPGNIGRLKLYEDHTPLFSRFQIEHQIESAF
                     SRSVSLPSGGAIVIDHTEALVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLR
                     DLGGLVVIDFIDMENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPA
                     LGESSHVACPRCAGTGVIRGIESTALHVLRIIQEEAMKDNTGEVRAQVPVDVATFLLN
                     EKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTDDVEEDGEPSYKRVAEPEEDE
                     SAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQA
                     APAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKVEVREVAGKTAGQEARADKAET
                     RNNGNRRRNERGDRAAGRADEAEIQDRNIQPAATVADAAPSETEVQTGKRRRNGSRSE
                     RGQTAPETATVAETTVQTAENTPSEPHTAEDKGSKPKSERNRRERDSRDAKERRERNN
                     QRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPVA
                     ERDLPTASPAVSNGDAPVYDAAEKIRRATAAILPEGATPKAEAQEMPSETATFTAAAE
                     QARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKPSEVATVPAEEMIQV
                     ETRQG"
     gene            9915..10907
                     /locus_tag="WHR98_000696"
     CDS             9915..10907
                     /locus_tag="WHR98_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEZ2307403.1"
                     /translation="MKTHEISKDSVSLIGVAEHEAGQRLDNYLIKILKGVPKSHIHRI
                     IRAGEVRLNKKRCKPDSRIAEGDTVRIPPVRVAEKEMPSERRAAVPARAFEAVYEDDA
                     LLVIDKPSGVAVHGGSGVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMVAKKRSA
                     LVKLHEAIRNDHPKKIYLALGVGKLPDDNFHVRLPLSKYTGAQGEKMVRVSADGQSAH
                     TVFRVLSRFSDGILHGVGLSHLTLVRATLKTGRTHQIRVHLQSQGCPIAGDERYGDYQ
                     ANRRLQKLGLKRMFLHASELHLNHPLTGEPLVLKVGLPPDLAQFAVMLENGTKM"
     gene            10955..12127
                     /gene="lpxB"
                     /locus_tag="WHR98_000697"
     CDS             10955..12127
                     /gene="lpxB"
                     /locus_tag="WHR98_000697"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEZ2307404.1"
                     /translation="MWGQTNMADKKSPLIAVSVGEASGDLLGAHLIRAIRKRCPQARF
                     VGIGGELMKAEGFESLYDQERLAVRGFVEVVRRLPEILRIRRGLVRDLLSLKPDVFVG
                     IDAPDFNLGVAERLKRSGIPTVHYVSPSVWAWRRERVGKIVHQVNRVLCLFPMEPQLY
                     LDAGGRAEFVGHPMAQLMPLEDDRETARKTLGVDAGIPVFALLPGSRVSEIDYMAPVF
                     FQTALLLLERYPAARFLLPAATEATKRRLAEVLQRPEFAGLPLTVTDRQSETVCRAAD
                     AVLVTSGTATLEVALCKRPMVISYKISPLTYAYVKRKIKVPHVGLPNILLGKEAVPEL
                     LQSEAKPEKLAAALADWYEHPDKVAALQQDFRALHLLLKKDTADLAARAVLEEAGC"
     gene            12135..12293
                     /locus_tag="WHR98_000698"
     CDS             12135..12293
                     /locus_tag="WHR98_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307405.1"
                     /translation="MDYFPEAARITKKGGEIVINGTSNNKYLRGIPNETELARMGLRL
                     KYNGQLTD"
     gene            complement(12337..12726)
                     /locus_tag="WHR98_000699"
     CDS             complement(12337..12726)
                     /locus_tag="WHR98_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF596 domain-containing protein"
                     /protein_id="HEZ2307406.1"
                     /translation="MNVKIKYNLLEYCEYLGGIFGVYKNYLNMDIKDPNLKIRFFDFL
                     EELLSDGVIELCDYRENPPKILTGSPKTQVDELRRIWPDMEEMLLYFPDNPWFYVEHF
                     WWGATCPIELTQLPKIEIYEEQMKQGK"
     gene            12949..13359
                     /locus_tag="WHR98_000700"
     CDS             12949..13359
                     /locus_tag="WHR98_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307407.1"
                     /translation="MTTYTIPKKDYQFLYIYEGTLLNYTLKNDEFHIIVQNVDYPDFP
                     QEIPMPNYSEWVKIKFKQFSYLKFIYGYATKNQDKNIKNVLELGELKQDDEILDYGGA
                     LELIGGRYDFPTAFRIDIVCREIELEFLDQEGFN"
     gene            complement(13623..14432)
                     /gene="dapB"
                     /locus_tag="WHR98_000701"
     CDS             complement(13623..14432)
                     /gene="dapB"
                     /locus_tag="WHR98_000701"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEZ2307408.1"
                     /translation="MTPLKIAIAGANGRMGRVLVEAVNNHPDTVLSGALEHSGSEALG
                     LDAGYAVGLKTGIAISDDVDAVLAQSDVLIDFTRPEPTLKHLQKCVEKQVNIIIGTTG
                     FDDAGKAAIHTAAEQTGIVFAANFSVGVNLTFHILDTVARVLNEGYDIEIIEGHHRHK
                     VDAPSGTALRMGEVIAGALGRDLKQCAVYGREGHTGPRDPSTIGFATVRAGDIVGDHT
                     ALFATDGERVEITHKASSRMTFAAGAVRAAVWVNGKTGLYDMQDVLGLNNR"
     gene            complement(14442..14819)
                     /locus_tag="WHR98_000702"
     CDS             complement(14442..14819)
                     /locus_tag="WHR98_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HEZ2307409.1"
                     /translation="MNKTLILALSALLGLAACSAERASLFPSYKLKVIQGNEIDPRAA
                     AALRLGMTKDQVLLLLGSPLLRDAFHTDRWDYTFNTSRNGIIKERSNLTVYFENGVLV
                     RTEGDALQNAAEALKDRQNTDKP"
     gene            15038..15472
                     /gene="fur"
                     /locus_tag="WHR98_000703"
     CDS             15038..15472
                     /gene="fur"
                     /locus_tag="WHR98_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HEZ2307410.1"
                     /translation="MEKFNNIAQLKDSGLKVTGPRLKILDLFETHSEEHLSAEDVYRI
                     LLEEGVEIGVATIYRVLTQFEQAGILQRHHFETGKAVYELDKGDHHDHIVCVKCGEVT
                     EFHNPEIEALQDKIAEENGYRIVDHALYMYGVCSDCQAKGKR"
     gene            15542..16267
                     /locus_tag="WHR98_000704"
     CDS             15542..16267
                     /locus_tag="WHR98_000704"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEZ2307411.1"
                     /translation="MRIPLLAPDNYAFPDPTYALARCDGLVGVSGDLDAGRLLEAYRN
                     GVFPWFSRDGWFFWYAVGPRAVIVPERLHVPRSLAKTLRSGSYRVAVNGCFAEVVAHC
                     AAAARPNQDGTWIAPEFQTAYLKLHEMGHAHSFECHYPDESGETRLAGGFYGVQIGRV
                     FYGESMFALQPDASKIAFACAVPFLADLGVELIDCQQDTEHMRRFGSELLPFADFAER
                     LRMLNAVPLKEEIGRREVACRGL"
BASE COUNT         3343 a         3966 c         4920 g         4074 t
ORIGIN      
        1 tcattcccgc aaaaacaaaa aaatcaaaaa cacaaaactg aaatatcgtc attcccgcgc
       61 aggcgggaat ctaggtctgt cggtacggaa acttatcggg aaaaacggtt tttccaaccc
      121 tgagactccg gattcctgtt ttcgcaggaa tccggttttt tgagtttcag tcattttgat
      181 aaattcttgc agctttgggt ttctagattc ccgcttttgc gggaatggcg gtttggaagt
      241 tacctgaaat tcaaaaaaac ggaaaccgga cggactggat tcccgttttc acgggaatga
      301 cggattttag gtttcttttt tgattttctg tttttcgcgg gaatggcggt ttggaagtta
      361 cctgaaattc aaaaaaaaaa aacggaaacc ggacggattg gattcccgcc tgcgcgggaa
      421 tgacggattt taggtttttt tttgattttc tatttttcgc gggaatgacg gtttgggttc
      481 tttctctttg gagttgcgat gccggaaatg ccgtctgaag gcttcagacg gcatttttgt
      541 gccggtttaa aacaaggcct gctgcgcgag caggtttctg acgggggcga agtcgcggcg
      601 gtgttcgggc agcacgccgt attgtttgag ggcttccaga tgctgcttcg tgccataacc
      661 tttgtgtttg tcgaaaccgt attggggatg gcgttgcgcc agtgcgtaca tttctgcatc
      721 gcgtgcggtc tttgccaaaa cggatgcggc ggagatttcg atgattttgc tgtcgccttt
      781 gacgacggct tcggcaggga tacctaaatg ttctggaatg cggttgccgt cgatgaatat
      841 tttttcgggg tgcacaacca aaccgtcaac ggcgcgtttc atggcaagca tggtggcgtg
      901 caggatgttg aggctggcga tttcttcggg cgtggcggcg gcgacgtgcc acgcggccgc
      961 ctgatcttta atcatttcgg caagcgtgtc gcgttttttc tcgctgagtt ttttggagtc
     1021 ggtcagtccg ggtaggtcaa acgtttccgg aaggatgacg gcggcggcaa acacgctgcc
     1081 gactaaaggt ccgcgtccgg cctcgtccac gccggcggtc agtatgtgca tgatgtttcc
     1141 tgtcgggatg gtacgatgcc gtctgaaaag ggtttcagac ggcatcgtac cgatgtgttt
     1201 atttcgcgtc tttaaacccg cgcttcaaat gcaccatcag cagtgcgacg gcggcaggcg
     1261 ttacgccgga aatgcggctt gcctgcccga cggtttcggg tttgtgctgg ttgagctttt
     1321 gctgcacttc tgccgacaag cctttgactt tgccgtaatc gatgccgtcg ggcagtttta
     1381 aggtttcgat gtcgcggcgg ctgtcgattt cttcgttttg gcggtcgata tagccttggt
     1441 atttgacttg gatttcgact tgttcgatga cttcggcgga gaggttttca gacggcatcg
     1501 cgccttcgag cgtcatcagc gcggcgtagt cgaggttcgg gcggcgtaac aaatcgtgca
     1561 ggttggcttc tcggctgagt ttttgtccga atacgcggat ttgttcgtct tcggcgagtt
     1621 tttgcggtgt gtaccacgtt gttttcaaac gttggatttc gcgttcgacg gcttcgcgtt
     1681 tttcgttgaa catacgccat tgcgcttcac ccaccaagcc gattttgtag ccgtcttcgg
     1741 tcaggcgcat gtcggcgttg tcttccctga gttgcaggcg gtattcggcg cggctggtga
     1801 acattcggta gggttcgttc acgcctttgg tgatgaggtc gtccaccaat acgccgaggt
     1861 aggcttgttc gcggcgcagc aggagcgggt cttgtccgcg cacatattgc acggcgttcg
     1921 cgcctgccaa taaaccttgc gcggcggctt cttcgtagcc ggtcgtaccg ttgatttgcc
     1981 cagcgaaaaa cagtccctca atggttttgg tttcgaggct ggctttgagg ttgcgcgggt
     2041 cgaagtagtc gtattcgatg gcgtagccgg ggcgcaggat atgggcgttt tccaaacctt
     2101 tcatactgcg gacgagcgcg atttggatgt cgaacggcag gctggtggag ataccgttag
     2161 gatagtattc gtacgtagtc aggccttcgg gttctaggaa aatctggtgg ctgtctttat
     2221 cggcgaaacg gttgattttg tcttcgatag acggacaata acgcgggccc acgccttcga
     2281 ttttgccggt aaacatcggg ctgcggtcga agcctgagcg gatgatgtcg tgggtttgcg
     2341 tgttggtatg cgtaatccag caggacactt ggcgcgggtg catttcggcg ttgccgcgca
     2401 cggacatgac gggaacgggt gtgtcgccgg gctgttcggt cagttgggaa aagtcaatcg
     2461 tgcgtccgtc gatgcgcggc ggcgtgccgg ttttcagacg gccttgcggc agcttcaatt
     2521 cgcgcaaacg tccgcccagc gatttggcgg cggggtcgcc ggcgcgtccg ccctcgtagt
     2581 tttccaaacc gatgtggatt ttgccggaca aaaacgtgcc tgcggtcaac accacggcgc
     2641 gtgctttaaa ctccacgccc atcgcggtga ttacgcctga aatgcggtcg ccatcgagcg
     2701 ttacgtcttc gacggcttgt tggaaaaggt cgaggttttc ttggttttcc aacatttcgc
     2761 ggatggcggc tttatatagg atacgatccg cctgcgcgcg cgtggcccgt actgccgcgc
     2821 ctttgctggc gttcagacgg cggaactgga tgccggattt gtcggttgcc aacgccatcg
     2881 cgccgccgag cgcgtcgagt tcgcgcacca aatgcccttt gccgatgccg ccgatggaag
     2941 ggttgcacga catttgtccg agcgtttcaa tattgtgtgt gagcaaaagc gtctgcgcgc
     3001 ccatacgggc ggcggcgagc gcggcttctg tgccggcgtg tccgccgccg acgacgataa
     3061 cgtcgtaggt tttggggtaa atcatgtggg tcatgtgtgt attgcctgac ggtgtttcag
     3121 acggcattta tagtggatta acaaaaacca gtacagcgtt gcctcgcctt agctcaaaga
     3181 gaacgattct ctaaggtgct gaagtaccaa gtgaatcggt ttcgtactgc ttgtactgtc
     3241 tgcggcttcg tcgccttgtc ctgatttttg ttaaaccact atattcaata tgccgtctga
     3301 aaaacgaaat ggattcaaaa gtaaagggtt gggattgtac gcttgttcgc cctgttttta
     3361 cagtgtgcgg aaagggaaaa gccgcttcgc ggggaagcgg ctccggtaag ggcgggattt
     3421 accaaacgtc ggatttgata cggcgtttca ggcccggatg ttcggaaagt ttgaactcgg
     3481 ggtctttgcc cattttcagc ttggcggtgt aatcgcgcag cagcataaac gccaagggcg
     3541 agagcagcag gatggcgaca aggttgatcc acgccataat gcccatcgcc atatccgcca
     3601 tatcccagac caaaggcaca ttggcaaccg cgccgaaata gacccacgcc aaaaccagca
     3661 tacggaaaac ggcggtaatc agccaatggc ttttgatgaa ttggacgttg gactcggcat
     3721 aggcatagtt gccgataacg gtggaaaagg caaacataaa caggatgacg gcgaggaagc
     3781 ccgcgcccca ttgccccact tggctgacaa tcgccgcctg cgtcaacgcc gcaccgctca
     3841 aatcgccgta aggctgttgg taaatcaaga tgatgaaggc ggtgcaagaa caaacgatga
     3901 tggtatcgac aaacacgccc agcatttgaa tcataccttg cgaaacaggg tgtttcactt
     3961 cggcggcggc ggcggcgttc ggcgcggaac ccatacccgc ctcgttggaa tacaggccgc
     4021 gtttgatgcc catcatcatc gtttgcgaaa tcagaccgcc gagtaagccg cctgctgccg
     4081 cgtcgaattt gaacgcgccc gaaaaaatct gaccgaacac gtccggaatc atcggaatat
     4141 tggtcaaaat gatgaaaagc gcgataaaga ggtacaaaac cgccatcagg gggacgacga
     4201 tttccgccgc tttagatatg cgcctgatgc cgccgaagat aatcggcgcg gttaaaatca
     4261 ccagggcgac gccgacataa tgaggctccc aaccccacgc cgctttgacg gtatcggcaa
     4321 tggtattggt ctgaaccgct tcaaacacaa agccgaaaca gaaaatcagg ctcagggcga
     4381 acaacacgcc cagccatttc tgccccagcc cttgagtgat gtagtaggca gggccgcccc
     4441 ggaaatggtg gttgtcgtag tcgcggactt taaagagctg cgccagcgaa gattcgacaa
     4501 acgccgaact cataccgatt aaggcggtta cccacatcca aaacaccgcg cccggtccgc
     4561 cgactttgat ggcgatggcc acgcccgcga tattgcccac gcccacgcgg ctggcaaggc
     4621 cggttacaaa tgcctgaaac ggcgtgatgc cgtgagggtc gtccccctgt ttgcggccgc
     4681 cgagcatttc tttgatgctg cgcccgaaca ggcggaattg gacaaagccc gtggttacgg
     4741 tgaagaaaag ccccgtaccc aaaagcatat aaaccaagta tgaccacatc ggatcgttga
     4801 tggcgccgac ccagccgtgc agccattcgg taaagttctc gttcatatcg cttccttaaa
     4861 gttgaaactc gcacatattg gcggtatgca agcagggttt aaattttgta aacgcccatt
     4921 ctagcagatt gtcaacaaaa tcagaaaaat ttacatcgcc gcgcggctgc ggcgttagaa
     4981 tcgcattttg tttggagcaa acacgatgaa acagcctgtt tttgccgtta cttccggcga
     5041 gcctgccggc atcggccccg atatttgttt ggacttggcg tttgcacgcc tgccctgccg
     5101 ctgcgcggta ttgggcgaca aaaacctatt gcgcgcgcgc gccgaagcct tgggcaaaag
     5161 cgtcgtcttg cgcgacttcg atccggaatc aggcggcgcg gcatacggcg agctggaagt
     5221 gctgcacatc cctgccgccg aagcggttga ggcagggcgg ctcaatcccg ccaacgccgc
     5281 ctatgtgctg caacttttgg acaccgcgct cgcaggcatt tcagacggca ttttcgacgg
     5341 catcgttacc gcgccgctgc acaaaggcat catcaacgac gcgcgcgcaa gcacaggttt
     5401 tttcagcgga cacaccgaat atctggcgga aaaaagcggc acggggcagg ttgtgatgat
     5461 gcttgccggc aaagacctgc gcgtcgccct cgtaacgacc cacctgccgc tgaaagacgt
     5521 tgccgccgcc atcacgcaac cgctgattga aagcgtcgca cgcattctgc atcacgactt
     5581 aaaacacaaa ttcggcatca aaaatcccaa aatcctggtc gccggactca acccccacgc
     5641 cggcgagggc ggacacctcg gacacgaaga aaccgacacc attatccccg cattggaaaa
     5701 cctgcgccgc gaagggataa acctcgccgg cccgtatccg gcagatacgc tgttccaacc
     5761 gtttatgctc gaaggtgcgg atgccgtatt ggcgatgtac cacgaccaag ggctgcccgt
     5821 gttgaaatac cacagcttcg gacagggcgt gaacatcacg ctcggcctgc cctttatccg
     5881 cacctccgtc gatcacggca ccgcgctcga tttggcggca accggcaggg cggattccgg
     5941 cagcctgata actgccgtgg agaccgccgt cgagatggcg cgcggcagcc tttaaagatg
     6001 ataaaagacc cgtcatttcc gcgcaggcgg gaatccggtc tgttcggttt cagttgtttt
     6061 tgggtttcgg gtaatttcca aatcgtcatt cccgcgcagg cgggaatcca gaccttcggg
     6121 cgacggcaat attcaaagat tatccgaaag tttgaggttc tagattcccg ttttcacggg
     6181 aatgacggaa tgttgcggga atccggcttg ttcggtttcg gttttttttt ttgaggtttc
     6241 gggcaacttc taaaccgtca ttcccgcgca ggcgggaatc caggcctttg ggcgacggca
     6301 atattcaaag attatctgaa agtttagagg ttctagattc ccgttttcac gggaatgacg
     6361 aaaggtggcg ggaatgacgg gaatggcgaa gtttcagacg gcatcgtcca ccctccgccg
     6421 tcattcccgc gcaggcggga atccaggcct ttgggcgacg gcaatattca aagattatcc
     6481 gaaagtttga ggttctagat tcccgttttc acgggaatga cgaaaggtgg cggtaatgac
     6541 gggaatggcg gaatgtttcg gtaattacgg gaatggcgaa gtttcagacg gcattgcagg
     6601 tatccgaacc catgtaaaaa agaggttctg cggaacagaa cctctttttg ccgccgtcgg
     6661 ttcagccttg ccgggtttcg acttggatca tttcttcggc agggacggtt gcgacttcag
     6721 acggcttggg ctgttcggaa cggcgcaaac cgcgtccggc ttggacttcg ggttgtgccg
     6781 cccatgcctt caatgcggca gggtcggttt cgatcaggac gagtccgccg gtttgtgcgg
     6841 tttcccgtgc ctgttccgcc gcagccgtaa aggttgcggt ttcagacggc atttcctgtg
     6901 cttcggcttt cggtgtcgcg ccttcgggca ggatggcggc ggtggcacgg cggatttttt
     6961 ccgccgcatc ataaaccggt gcgtcgccgt ttgaaacggc gggagatgct gtcggaagat
     7021 ccctttctgc aaccggatcg gcaatgctga cggtaatcgg cgcgtttgcg tcggtttcgc
     7081 cgaaaacgtg cgcggcggcg gaacggactt tgtcggcggt gtcgtgaata ttcaggtact
     7141 gctcgatttt ggcggcagac ggaatattgc gttttttgcc gttttgacgg cggtcgcgct
     7201 gattgttgcg ctcgcggcgt tctttggcat ctcggctgtc gcgttcgcgg cggttgcgtt
     7261 cggatttggg cttgctgcct ttgtcttctg cggtatgcgg ttcggacggc gtgttttccg
     7321 ctgtctgaac ggttgtttcg gcaacggtgg cggtttccgg cgcggtttgg ccgcgttcgc
     7381 tgcggctgcc gttgcggcgg cgttttccgg tttgcacttc ggtttcggac ggtgcggcat
     7441 ctgcaacggt tgcggcaggc tgtatgttgc ggtcttggat ttccgcttcg tcggcgcgtc
     7501 cggcggcacg gtcgccgcgt tcgttgcggc ggcggttgcc gttgttgcgc gtttcggctt
     7561 tgtcggcacg cgcttcctgt ccggcagttt tgcctgccac ttcgcggact tctactttgc
     7621 tgccttcgcg tttgctgcgg cgcgggtttt ggcggcggtt gttggcgcgg ctgccgctgc
     7681 ggtttgccgt gctgcgtttt tcggaggttt cggcagcggg cgcggcttgg gtttcgctgc
     7741 cgccgaaaat gcgtttgagc caagctttga agctgtccca ccaagaggtt tttttctcgg
     7801 gggcggcagt cggggcgggg ctggtgtggc gcacgccttt gacggcgggt tcgggacggg
     7861 cggctttggc tttttcgccg ccgaacggtt tggcggattc gtcttcttca ggctcggcga
     7921 cgcgtttgta gctcggttcg ccgtcttctt ctacgtcgtc ggtgcggatg cggttgattt
     7981 cgtagtgcgg attttcgagg tggatgttcg gaatcaggac gacgttgaca tccaaacgct
     8041 cttccatcgc aaacagctcg gcgcgttttt cgttcagcag gaaggtggcg acatcgacgg
     8101 gcacttgggc gcgcacttct ccggtgttgt ccttcatcgc ttcttcttga atgatgcgta
     8161 aaacgtgcag ggcggtggat tcgatgcccc gaatcacgcc ggtgccggcg cagcgcggac
     8221 aggcgacgtg gctgctttcg cccaaagccg gtttcaaacg ttggcggctc aattccaaaa
     8281 ggccgaaacg ggagagtttg cccatctgta cgcgggcgcg gtcttttttg agcgcgtcgc
     8341 gcaggacgtt ttccacatcg cgctggtgtt tggggttttc catgtcgatg aagtcgatga
     8401 cgaccaagcc gcccaagtcg cgcaggcgca tttgtcgggc gacttcttcg gcggcttcca
     8461 tattggtttt gaacgcggtg tcttcaatgt ctgcgccgcg agtggcgcgt gcggagttca
     8521 cgtcgatgga gacgagggct tcggtatggt cgatgacgat cgcgccgccg gagggcaggc
     8581 tgacgctgcg cgaaaacgcg ctttcgattt ggtgttcgat ttggaagcgg gaaaacagcg
     8641 gcgtgtggtc ttcgtagagt ttcagacggc ctatattgcc cggcatgacg tagctcatga
     8701 actcggcaac ttggtcgtaa acttcttgat tgtccaccag aatttcgccg atgtcggggc
     8761 ggaaatagtc gcggatggcg cggatgagca gcgagctttc cataaagagc aggtaagggt
     8821 cgtgatgcgc ttttcctgct tcttcaatcg cctgccagag ttgtttgaga tagttcaaat
     8881 cccattccaa ctcttccgcg ctgcggccga tgccggcggt acgggcgatg atgctcatgc
     8941 cgttcggaat gtcgagttgc gccatagcgg ctttgagttc ttgacgttct tcgccttcga
     9001 tacggcggga tacgccgccg ccgcgcgggt tgttcggcat caataccaga tagcgtccgg
     9061 ccaggctgat gaaggtggtc agcgccgcgc ctttgttgcc gcgctcgtct ttttcgactt
     9121 ggacgatgac ttccatgcct tctttgagca cgtcttggat gcgcgcgcgt ccgccttcgt
     9181 agtcttggaa gtatgagcgg gagacttctt taaacggcaa aaagccgtgg cggtcggttc
     9241 cgtaatcgac gaaacacgct tccagcgacg gctcgatgcg ggtaatgata cctttgtaga
     9301 tattgccttt acgctgttct ttgcccagcg tttcgatgtc caagtccaaa aggttttggc
     9361 catcgacaat ggcaacgcgc agctcttcgg cctgcgttgc gttgaataac attcttttca
     9421 tgatcacctc gtggacgggc ggcattcggg cgcgccggtc cggttcggca ttccgtaagg
     9481 ctgggttttc cgatgtcttc ggataaaacc ggtaatcagt ttttgagttg aaaatccgca
     9541 gggatgcacg ttccgaggaa ccgtgtgcgg aagggtcgga taaagaaggc aataaagatc
     9601 gatgcggcgg tctgtctgcc gcgttccgag cggtatggtc ggaaaaatgg gtgccggctt
     9661 cttcttgtta tcgtgatgcc tgtgttttcg ggcggtttgc gtttgggact tggggcccgg
     9721 ctgccgtctt acttccgcgc cgaaacggca aaatcaattc aaacttgatt acgttctgcg
     9781 cctgccggct gggaacaggc gcagggaaaa tgctttgcgg agtgcgtttt taatataaaa
     9841 ttccgtttta aagtaaaccg tttcaggagg cgcggcgggc gcgctttttg ctgaaacgga
     9901 tgttcggatt atagatgaaa acgcacgaaa taagcaaaga ttcggtcagc ctgatagggg
     9961 ttgccgaaca cgaggcgggg caacgccttg ataactatct gataaaaatc ctcaaggggg
    10021 ttcccaagag ccatatccac cgcattatcc gcgccggcga ggtgcggttg aacaagaaac
    10081 gctgcaaacc cgacagccgt attgcggagg gggatacggt gcggattccg cctgtgcgcg
    10141 tggcggagaa ggaaatgccg tctgaaaggc gtgccgccgt accggcgcgt gcgtttgagg
    10201 cggtgtatga ggacgacgcg cttttggtga tcgataagcc ttccggcgtg gcggtgcatg
    10261 gcggcagcgg cgtgagtttt ggcgttatcg aacagttgcg ccgcgcccgt ccggaggcgc
    10321 gttatctcga actcgtccac cgtttggaca aggatacgag cggtttgttg atggtggcga
    10381 agaaacgcag cgcgctcgtc aaacttcacg aagccatccg taacgaccac cccaaaaaaa
    10441 tctaccttgc gctgggggtg ggcaaactgc cggacgataa tttccacgtc aggctgccgc
    10501 tgtccaaata tacgggcgca cagggcgaaa agatggtgcg cgtcagtgcg gacgggcagt
    10561 cggcgcatac ggtgttccgt gtgttaagcc gtttttcaga cggcattttg cacggtgtcg
    10621 ggctgtcgca cctgactttg gtgcgggcga cgttgaaaac ggggcgcacg caccaaatcc
    10681 gcgtccacct gcaatctcaa ggctgtccga ttgcgggcga cgaacgctac ggcgattatc
    10741 aggcgaaccg gcgtttgcag aagttgggtt tgaagcggat gtttttgcac gcgtccgagc
    10801 tgcacctgaa ccatccgctc acgggcgagc cgctggtgtt aaaggtgggg ctgccgccgg
    10861 atttggcaca gtttgcggtg atgttggaaa acgggacgaa aatgtgaacc ccgatgccgt
    10921 ctgaagcctt cagacggcat cgggacgtga aagtatgtgg ggacagacga atatggctga
    10981 taaaaaaagc cctttgattg ccgtcagtgt cggcgaagcg tcgggcgacc tgttgggggc
    11041 gcacctgata cgcgccatcc gcaagcgttg tccgcaggcg cgttttgtcg gtatcggcgg
    11101 cgaactgatg aaggcggaag gtttcgagag cctttatgat caggagcggc tggcggtgcg
    11161 cggctttgtc gaagtggtca ggcggctgcc ggaaatttta cggatacgca gggggctggt
    11221 acgggatttg ctgtcgttga aacctgatgt ctttgtcggt atcgatgcgc ccgattttaa
    11281 tctgggtgtg gcggagcggc tcaaacggtc ggggattccg accgtgcatt atgtcagtcc
    11341 gtcggtttgg gcgtggcggc gggaacgcgt gggcaaaatc gtgcatcagg tcaaccgcgt
    11401 gctgtgcctg ttcccgatgg agccgcagct ttatcttgat gcgggcggac gtgcggagtt
    11461 tgtcggtcat ccgatggcgc agcttatgcc cttggaagac gaccgtgaaa cggcgcggaa
    11521 aactttgggc gtggatgccg gcatccccgt attcgccctg ctgcccggca gccgcgtcag
    11581 cgaaatcgac tatatggcgc cggtgttttt tcagacggca ttattgttgt tggaacgcta
    11641 tcccgccgca cgcttcctgc tgcctgccgc aactgaggcg acgaagcggc gtttggcgga
    11701 agttttgcag cgtccggagt ttgccggatt gccgctgacg gtaaccgaca gacagtctga
    11761 aacagtgtgc agggcggcgg atgcggtgct ggtaacgagc ggtacggcaa ctttggaggt
    11821 ggcgttgtgt aagcgtccga tggtcatcag ctacaagatt tcgccgctga cctatgctta
    11881 tgtgaaacgc aaaatcaaag tgccgcatgt cggcctgccg aatatcctgt tgggtaagga
    11941 ggctgtgccg gaattattgc aatctgaagc aaaaccggaa aaactggcgg cggcgttggc
    12001 ggactggtac gaacaccccg ataaggttgc cgcgctgcaa caggatttca gggcgttgca
    12061 cctgctgttg aaaaaagata cggcggattt ggccgcgcgc gcggttttgg aagaggcggg
    12121 atgttgagcg gttaatggat tattttcccg aagcagcacg tattacaaaa aaagggggag
    12181 aaattgtgat taatggcaca tcaaacaata agtatttaag aggaattcca aatgaaacag
    12241 aactggcccg aatgggatta aggttaaaat ataatggtca gttaactgat taattttgtt
    12301 atatatgatt tatgattata gcttatacta atacgcttac ttaccttgtt tcatttgttc
    12361 ttcgtaaatt tctattttag gcaattgtgt cagttcaata gggcaagttg ctccccacca
    12421 aaaatgttct acataaaacc aaggattatc tggaaaatat agcaacatct cttccatatc
    12481 cggccaaatt cttcttaatt catctacctg tgtttttggc gaaccagtta atatttttgg
    12541 aggattttca cgataatcgc ataattcaat aacaccatct gataaaagtt cttccaaaaa
    12601 atcaaaaaat ctaattttta aatttggatc tttgatatcc atatttaaat aatttttata
    12661 aacaccaaaa ataccaccta aatattcaca atattctaaa agattatatt ttatcttcac
    12721 attcataacg taacctttat ctaaatttta attctaatct ttgcccatgt actgaatcag
    12781 gttgattcct aaactcaatc gtccattttg ctccagtttg ttctcggcta gttgaaaaat
    12841 tccttaaaat aaaggaagag tttaaacaac tgaaatttca taagagtagt agaaccaact
    12901 tggactcaaa aaatcttaaa ctcattgttt ttgaaaaggt aaaataatat gacaacttat
    12961 accattccaa aaaaagatta tcaatttctg tatatatatg agggcactct attaaactat
    13021 actttgaaaa acgatgaatt ccatatcatc gtccagaatg tggattatcc ggactttcct
    13081 caagagatcc ctatgcccaa ttattcagaa tgggtaaaaa ttaaattcaa gcagttcagc
    13141 tatctgaaat ttatctatgg atacgccacg aagaaccaag ataaaaatat caaaaatgta
    13201 ttggaacttg gagaattaaa gcaggatgat gaaatcttgg attatggagg tgcgctggaa
    13261 ttgataggcg gtaggtatga ttttccgact gcttttagga tagatatagt ttgccgggaa
    13321 atagagttgg aatttttaga tcaggagggt ttcaattaaa cgagccgtag cttgttatgc
    13381 tgagcaggca actttatcgt atttcctttt cggttgaaac cccgccactc ggacatctgt
    13441 ccttcggggc ggtagaatca gattttattt gggaggggcg taaccccttc cgaatcaggg
    13501 caacacatag ggcgacgctt tatgtgtcgt cctgtgtgtt gaaacattga tatgccgata
    13561 cggagcctgt cggcaaaatg ccgtctgaac aatatctttt cagacggcat tttgtatggg
    13621 ggttaacggt tgttcagccc gagtacgtcc tgcatatcgt acaaacccgt tttgccgttg
    13681 acccaaactg cggcgcggac ggcaccggcg gcaaaggtca tgcggctgct ggccttgtgg
    13741 gtgatttcca cgcgctcgcc gtcggtggcg aagagggcgg tgtggtcgcc gacgatgtcg
    13801 cctgcgcgga cggtggcaaa gccgatggtc gacggatcgc gcggaccggt gtggccttcg
    13861 cggccgtaaa cggcgcattg tttgaggtct ctgccgagcg cgccggcgat gacttcgccc
    13921 atgcgtaacg cggtgccgct gggggcatcg actttgtggc ggtggtggcc ttcaatgatt
    13981 tcgatgtcgt agccttcgtt taatacgcgt gcgacggtgt cgaggatgtg gaaggtgagg
    14041 ttgacgccga cgctgaagtt ggcggcgaaa acgatgcctg tttgttcggc ggcagtgtgg
    14101 atagcggctt tgcccgcatc gtcgaagcct gttgtgccga tgatgatgtt gacttgtttt
    14161 tcaacgcatt tttgcaggtg tttgagggtg ggctcggggc gggtgaagtc gatgagtacg
    14221 tcgctttgtg cgagaacggc gtcaacgtcg tctgaaatgg cgatgccggt tttgagtccg
    14281 acggcgtagc ctgcgtccag tccgagggct tctgagcctg agtgttcgag cgcgccggaa
    14341 aggacggtgt cgggatggtt gttgacggct tcaaccaata cgcgtcccat acggccgttt
    14401 gcgccggcga tggcgatttt gagcggtgtc atgtgtgttc cttatggttt gtctgtgttt
    14461 tggcggtctt tgagggcttc ggcagcgttt tgcagggcgt cgccttcggt gcggacgagt
    14521 acgccgtttt caaaatagac ggtcagattg ctgcgttctt tgatgatgcc gttgcgggag
    14581 gtgttgaagg tatagtccca gcggtcggtg tggaacgcgt cgcgcaacag ggggctgccg
    14641 agcaggagca ggacttggtc tttggtcata ccgaggcgga gtgcggcggc ggcgcggggg
    14701 tcgatttcgt tgccctgtat gactttgagc ttgtatgagg ggaacagcga ggcgcgttcg
    14761 gcactgcacg cggcaaggcc aaggagggcg gaaagggcga ggatgagggt tttgttcacg
    14821 gaaatgcctt tctgtgcaaa tcgggatggg tagtgtaaca ctgcttgaat attttataaa
    14881 agcgaacgat aatcatacga ttaagcggta tccgccctgt ccgcgcatcg gccgccggtg
    14941 cggttttact attgcaaact gctatggtgc gatagtgggc aaacaggccg aaattgcgta
    15001 ttataacgtc tattgtttta caggggtatt gaatattatg gaaaaattca acaatattgc
    15061 acaactgaaa gacagcggtc tgaaggttac cggcccgcgt ttgaagattt tggatttgtt
    15121 cgagacgcat tcggaagagc atttgagtgc ggaagatgtg taccgcattt tgttggaaga
    15181 gggtgtggaa atcggtgtgg cgacgattta ccgtgtgctg acccagtttg agcaggcggg
    15241 tattctgcaa cgccatcatt ttgaaacggg caaggcggtt tatgagttgg acaaaggcga
    15301 ccaccatgac cacatcgtct gcgtgaagtg cggcgaggta acggaattcc acaatcccga
    15361 aatcgaagcc ctgcaagaca aaatcgctga ggaaaacggc taccgcatcg tcgatcacgc
    15421 gctttatatg tacggcgtgt gcagcgactg tcaggccaag ggcaaacgtt aaatccggac
    15481 ggtttgttgt tcagacggca ttcatgattt tggatgccgt ctgtgttttt ggagaactgc
    15541 catgcgtatt ccgctgcttg cccctgacaa ttatgccttt cccgatccta cctatgcttt
    15601 ggcccggtgc gacgggctgg tcggcgtgag cggcgatttg gatgcggggc ggctgctcga
    15661 ggcgtatcgg aacggcgtgt ttccgtggtt ttctcgggac ggttggtttt tttggtatgc
    15721 ggtcggcccg cgtgcggtga ttgttcccga acgtctgcac gttccgcgct cgctggcgaa
    15781 aacgctgcgc agcggcagct atcgggttgc ggtcaacggc tgttttgcgg aagtggtcgc
    15841 gcattgtgcg gcagcggcgc gcccgaatca ggatggaact tggattgcgc ccgagtttca
    15901 gacggcatat ttgaagctgc acgaaatggg acacgcgcat tcgttcgagt gccattatcc
    15961 cgatgaaagc ggtgaaacga ggttggcggg cggcttttac ggcgtgcaaa tcggcagggt
    16021 gttttatggc gaatcaatgt ttgcgttgca accggatgcg tcgaaaatcg cgtttgcctg
    16081 cgccgtgccg tttttggcgg atttgggcgt ggaactgata gactgccagc aggatacgga
    16141 acatatgcgc cgtttcggtt cggagttgct gccgtttgcg gattttgccg aacgtctgcg
    16201 gatgttgaac gccgtgccgt tgaaagagga aatcgggcgg cgcgaagtgg cgtgcagggg
    16261 gctttgatgg cggcttatgc ttcggtcagg ttcaaatatg gtg
//
LOCUS       DAWGNT010000030        15829 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.030, whole genome shotgun sequence.
ACCESSION   DAWGNT010000030 DAWGNT010000000
VERSION     DAWGNT010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15829
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.030"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..79)
                     /locus_tag="WHR98_000705"
     CDS             complement(<1..79)
                     /locus_tag="WHR98_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HEZ2307412.1"
                     /translation="MKPVVWAALLLCACTSNFGDREHQFL"
     gene            282..1610
                     /gene="miaB"
                     /locus_tag="WHR98_000706"
     CDS             282..1610
                     /gene="miaB"
                     /locus_tag="WHR98_000706"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEZ2307413.1"
                     /translation="MKKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADII
                     LFNTCSVREKAQEKVFSDLGRVRPLKEKNPGLIIGVAGCVASQEGENIIKRAPYVDVV
                     FGPQTLHRLPKMIVDKETSGLSQVDISFPEIEKFDHLPPARVEGGAAFVSIMEGCSKY
                     CSFCVVPYTRGEEFSRPLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDF
                     ATLLRIVHEIPGIERMRFTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSA
                     MKRGYTALEYKSIIRKLRAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSF
                     VFIYSPRPGTPAANLHDDTPHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGI
                     SKKDPDQLQARTANNRVVNFTGTPDMINQMIDLEITEAYTFSLRGKVVEA"
     gene            complement(1695..3602)
                     /gene="dxs"
                     /locus_tag="WHR98_000707"
     CDS             complement(1695..3602)
                     /gene="dxs"
                     /locus_tag="WHR98_000707"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEZ2307414.1"
                     /translation="MNPSPLLDLIDSPQDLRRLDKKQLPRLAGELRAFLLESVGQTGG
                     HFASNLGAVELTIALHYVYDTPEDKLVWDVGHQSYPHKILTGRKNQMHTMRQYGGLAG
                     FPKRSESEYDAFGVGHSSTSIGAALGMAAADKLLGSDRRSVAIIGDGAMTAGQAFEAL
                     NCAGDMDVDLLVVLNDNEMSISPNVGALPKYLASNVVRDMHGLLSTVKAQTGKVLDKI
                     PGAMEFAQKVEHKIKTLAEEAEHAKQSLSLFENFGFRYTGPVDGHNVENLVDVLEDLR
                     GRKGPQLLHVITKKGNGYKLAENDPVKYHAVANLPKESAAQMPSENKPAAKPTYTQVF
                     GKWLCDRAAADSRLVAITPAMREGSGLVEFEQRFPDRYFDVGIAEQHAVTFAGGLACE
                     GMKPVVAIYSTFLQRAYDQLVHDIALQNLPVLFAVDRAGIVGADGPTHAGLYDLSFLR
                     CIPNMIVAAPSDENECRLLLSTCYQADAPAAVRYPRGTGTGVPVSDGMETVEIGKGII
                     RREGEKTAFIAFGSMVAPALAVAEKLNATVADMRFVKPIDEELIVRLARSHDRIVTLE
                     ENAEQGGAGGAVLEVLAKHGICKPVLLLGVADTVTGHGDPKKLLNDLGLSAEAVERRV
                     RAWLSDRDAAN"
     gene            complement(3687..4604)
                     /gene="xerC"
                     /locus_tag="WHR98_000708"
     CDS             complement(3687..4604)
                     /gene="xerC"
                     /locus_tag="WHR98_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HEZ2307415.1"
                     /translation="MVLDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQM
                     PSEDEGGVPQDLSRRDFTAALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDP
                     TADIKPPKQPERVPKALSQEWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIH
                     GLNADDVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPLRQTASDGKALFTGRNG
                     TRLSQRQIQKRLAQWAAQNGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLS
                     TTQIYTKLDFDHIARLYDEAHPRAKRQDE"
     gene            4798..5862
                     /locus_tag="WHR98_000709"
     CDS             4798..5862
                     /locus_tag="WHR98_000709"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase class II"
                     /protein_id="HEZ2307416.1"
                     /translation="MALVSMRQLLDHAAENSYGLPAFNVNNLEQMRAIMEAADQVNAP
                     VIVQASAGARKYAGAPFLRHLILAAVEEFPHIPVVMHQDHGASPDVCQRSIQLGFSSV
                     MMDGSLMEDGKTPSSYEYNVNATRTVVNFSHACGVSVEGEIGVLGNLETGEAGEEDGV
                     GAVGKLSHDQMLTSVEDAVRFVKDTGVDALAIAVGTSHGAYKFTRPPTGDVLRIDRIK
                     EIHQALPNTHIVMHGSSSVPQEWLKVINEYGGNIGETYGVPVEEIVEGIKHGVRKVNI
                     DTDLRLASTGAVRRYLAENPSDFDPRKYLSKTIEAMKQICLDRYLAFGCEGQAGKIKP
                     VSLEKMASRYAKGELNQIVK"
     gene            5882..6841
                     /locus_tag="WHR98_000710"
     CDS             5882..6841
                     /locus_tag="WHR98_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="factor H binding family protein"
                     /protein_id="HEZ2307417.1"
                     /translation="MPSEPLFGRHLIFASLTCLIDAVCKKRYHNQNVYILSILRMTRS
                     KPVNRTAFCCLSLTAALILTACSSGGGGVAADIGAGLADALTTPLDHKDKSLQSLTLD
                     QSVRKNEKLKLAAQGAEKTYGNGDSLNTGKLKNDKVSRFDFIRQIEVDGQTITLASGE
                     FQIYKQNHSAVVALQIEKINNPDKIDSLINQRSFLVSGLGGEHTAFNQLPDGKAEYHG
                     KAFSSDDPNGRLHYSIDFTKKQGYGRIEHLKTPEQNVELASAELKADEKSHAVILGDT
                     RYGGEEKGTYHLALFGDRAQEIAGSATVKIREKVHEIGIAGKQ"
     gene            6980..7657
                     /gene="tsaB"
                     /locus_tag="WHR98_000711"
     CDS             6980..7657
                     /gene="tsaB"
                     /locus_tag="WHR98_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEZ2307418.1"
                     /translation="MQADFNRPVLAVDTGTSYLSLALRADGETLLFHQEAGSRQSELI
                     LPEIRTLFRNAGITAADLGAIVYAKGPGAFTGLRIGIGVAQGLATPFNTPLIGIPTLD
                     AAASLPPPQSCILAAADARMGEVFYAWFDTLNRRRLSDYQVGRAADIRLPEGCAFSDG
                     IGSAFALEETPPFSGKPDMPTAADFLNLAAEGGFPAVAAAHSELLYVRNKIALTAKEQ
                     AERKART"
     gene            7654..8094
                     /gene="rimI"
                     /locus_tag="WHR98_000712"
     CDS             7654..8094
                     /gene="rimI"
                     /locus_tag="WHR98_000712"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003702201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEZ2307419.1"
                     /translation="MNIRRASPSDCAALAALDAVCNPSAWTQRQFESALVSPSEQVFL
                     AEKDGGIAAFIVWQNLPDESELHLIATAPECRRRGVASALLEYWFAHLPEDTQRLLLE
                     VRAGNTAAQALYAAHGFTDAGRRKNYYRTADGKTEDAVLMEKIC"
     gene            8088..8825
                     /locus_tag="WHR98_000713"
     CDS             8088..8825
                     /locus_tag="WHR98_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEZ2307420.1"
                     /translation="MLSARYLHLHEALGLGPMWLKQAAAVLPPKNTPATPAQARPQTV
                     RAAPIRPSQPHNGQARLETMKALETAAVHTRKPAPETETPPPGLSDGIAPVPAASGIT
                     KLAVVSLCPPIEDAVYGQLFYGKAGVLLDNILKAVGLDAAYVHKTCWVKTAAVGNPMP
                     SEAAIETATVSVMQELDGCRAPAVLFLGQAFVQPERQTMIETLCGSRPFFIIDHPARL
                     LRQPELKARAWQVLKQLKRALRQGGGS"
     gene            8887..9528
                     /gene="pyrE"
                     /locus_tag="WHR98_000714"
     CDS             8887..9528
                     /gene="pyrE"
                     /locus_tag="WHR98_000714"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEZ2307421.1"
                     /translation="MTDFRQDFLKFSLAQNVLKFGEFTTKAGRRSPYFFNAGLFNDGL
                     STLQLAKFYAQSIIESGIRFDMLFGPAYKGIILAAATAMMLAEKGVNVPFAYNRKEAK
                     DHGEGGVLVGAPLKGRVLIIDDVISAGTSVRESIKLIEAEGATPAGVAIALDRMEKGT
                     GELSAVQEVEKQYGLPVAPIASLNDLFILLQNNPEFGQFLEPVRAYRRQYGVE"
     gene            9602..10036
                     /locus_tag="WHR98_000715"
     CDS             9602..10036
                     /locus_tag="WHR98_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307422.1"
                     /translation="MPACFCPHCKTRLWVKETQLNVAQGFVVCQKCEGLFKAKDHLAS
                     TKEPIFNDLPEAVSDVKLVHRIGTRAIGKKQISRDEIAGILNGGTTLHDTPPATAATP
                     AAAPQVAVPPAAPARQEGFNWTIATLFALIVLIMQLSYLVIL"
     gene            10033..11343
                     /gene="argA"
                     /locus_tag="WHR98_000716"
     CDS             10033..11343
                     /gene="argA"
                     /locus_tag="WHR98_000716"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HEZ2307423.1"
                     /translation="MIVPDLFVAHFREAVPYIRQMRGKTLVAGIDDRLLEGDTLNKLA
                     ADIGLLSQLGIRLVLIHGARHFLDRHAAAQGRTPHYCRGLRVTDETSLEQAQQFAGTV
                     RSRFEAALCGSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRF
                     QLDAGNIVWLPPLGHSYSGKTFYLDMLQTAASVAVSLQAEKLVYLTLSDGISRPDGTL
                     AETLSAQEAQSLAEHAGGETRRLISSTVAALEGGVHRVQILNGASDGSLLQELFTRNG
                     IGTSIAKEAFVSIRQAHSGDIPHIAALIRPLEEQGILLHRSREYLENHISEFSILEHD
                     GNLYGCAALKTFAEADCGEISCLAVSPQAQDGGYGERLLAHIIDKARSMGISRLFALS
                     TNTGEWFAERGFQTASEDELPETRRKDYRSNGRNSHILVRRLHR"
     gene            11439..13454
                     /locus_tag="WHR98_000717"
     CDS             11439..13454
                     /locus_tag="WHR98_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEZ2307424.1"
                     /translation="MKSYPDPYRHFENLDSAETQNFAAEANAETRARFLNNDKARALS
                     DGILNQMQDTRQIPFCQEHRARMYHFHQDAEYPKGVYRVCAAATYRSGYPEWKILFSV
                     ADFDELLGDDVYLGGVSHLVEKPDRALLTLSKSGGDTAYTLEVDLEAGELVEGGFHFP
                     AGKNHVSWRDENSVWVCPAWDERQLTESGYPREVWLVERGKSFEESLPVYQIGEDGMM
                     VNAWRYLDPQGSPIDLIEASDGFYTKTYLQVSAEGEAKPLNLPADCDVVGYLAGHLLL
                     TLRKDWHRANQSYPSGALVAVKLNRGEIGAAQLLFAPDETQALESVETTKRFVVASLL
                     ENVQGRLKAWRFTDGKWQEAELPRLPSGALEMTDQPWGGDVVYLAASDFTTPLTLFAL
                     DLNVMELTVMRRQPQQFDSDGINVQQFWTTSADGERIPYFHVGKNAAPDTPTLVYAYG
                     GFGIPELPHYLGSVGKYWLEEGNAFVLANIRGGGEFGPRWHQTAQGISKHKSVDDLLA
                     VVRDLSERGISSPQHIGLQGGSNGGLITAAAFVREPQSIGALVCEVPLTDMIRYPLLS
                     AGASWTDEYGNPQKYEVCKCRLGELSPYHNLSDGIDYPPALITTSLSDDRVHPAHALK
                     FYAKLRETSAQSWLYSPDGGGHTGNGTQRESADELACVLLFLKEFLG"
     gene            complement(13568..14524)
                     /locus_tag="WHR98_000718"
     CDS             complement(13568..14524)
                     /locus_tag="WHR98_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEZ2307425.1"
                     /translation="MNTAAIYRQYQTYVRSDKSGWALDGCSDSALIAQAKQPGLHLEM
                     CINRFDSGITLSRMRGGGTGAFPTEIHNFSHNCALFVMVSGQNRLQMGGREYRPSAGE
                     IWLVRGELADVSETLLPDNSGMCALHLDFSLEKLRRWHDEGLLDERLFSPQTIGRFAL
                     QRLAQNAAALTAAACPLLQRPFESDGFGLLADEAAALELSARLLRFTFRRHDNGYRRR
                     RIDEAADILQHEFARPLTIAEIARRVGLNECYLKRYFKAQTGETVAGCLRRLRLEHAL
                     ALIESGSTVQAAMHFCGYRHAGRFNEAFRRHYGFLPSDVKKC"
     gene            14760..15725
                     /locus_tag="WHR98_000719"
     CDS             14760..15725
                     /locus_tag="WHR98_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HEZ2307426.1"
                     /translation="MKPRFYWAACAVLLTACSPEPAAEKTVSAASASAATLTVPTARG
                     DAVVPKNPERVAVYDWAALDTLTELGVNVGATTAPVRVDYLQPAFDKAATVGTLFEPD
                     YEALHRYNPQLVITGGPGAEAYEQLAKNATTIDLTVDNGNIRTSGEKQMETLARIFGK
                     EARAAELKAQIDALFAQTREAAKGKGRGLVLSVTGNKVSAFGTQSRLASWIHGDIGLP
                     PVDESLRNEGHGQPVSFEYIKEKNPDWIFIIDRTAAIGQEGPAAVEVLDNALVRGTNA
                     WKRKQIIVMPAANYIVAGGSRQLIQAAEQLKEAFEKAEPVAAGKE"
BASE COUNT         3519 a         4839 c         4335 g         3136 t
ORIGIN      
        1 gcaggaactg atgttccctg tcgccgaaat tgctggtaca cgcacacagc agcaatgccg
       61 cccatacaac cggtttcata cacatctccc attaaagcca aacattatac agccgtcccg
      121 accgattaaa ttcatatttt aaaacaatat cctgcctcca aaacccacat cgtgctataa
      181 tccacaccga ttttcagacg gcatcgtcat gccgtctgaa attttttcat tccaacaacc
      241 atcagccccg cgattacggc tgcctgagaa agacacaaac catgaaaaaa gtatttatcc
      301 gtaccttcgg ctgccagatg aacgaatacg acagcgacaa aatgctcgcc gtcctcgccg
      361 aagaacacgg cggcatcgaa caggttaccc aagccgacga agccgacatc atcttgttca
      421 acacctgctc cgtgcgcgaa aaagcacagg aaaaagtgtt ctccgatttg gggcgcgtgc
      481 gtccgctcaa agaaaaaaac cccggcctta tcatcggcgt tgccggctgc gtcgcctcgc
      541 aagaaggcga aaacatcatc aaacgcgcgc cttatgttga cgtggttttc ggcccgcaaa
      601 cgctgcaccg cctgcccaaa atgattgtgg acaaagaaac cagcgggctg tcgcaagtcg
      661 atatttcctt ccccgaaatc gaaaaattcg accacctgcc gcccgcccgc gtcgaaggcg
      721 gcgcggcatt tgtatcgatt atggaaggct gttccaaata ctgctcattc tgcgtcgtcc
      781 cctacacgcg cggcgaagaa ttctcccgcc cgctcaacga cgtattgaca gaaatcgcca
      841 accttgccca gcaaggcgtg aaagaaatca acctcttggg acaaaacgtc aacgcctatc
      901 gcggcgaaat ggacgacggc gaaatctgcg acttcgccac cctgctgcgc atcgtccacg
      961 aaatccccgg catcgaacgt atgcgcttca ccaccagcca cccgcgcgag tttaccgact
     1021 cgattatcga gtgctaccgc gacctgccca aattggtttc ccacctgcac ctgccgattc
     1081 aaagcggttc cgaccgcgta ttgagcgcga tgaaacgcgg ctacaccgct ttggaataca
     1141 aatccatcat ccgcaaactg cgtgccatcc gtcctgattt atgcctgagc agcgatttca
     1201 tcgtcggctt ccccggcgag accgaacgcg agttcgagca aaccttgaaa ctggtgaaag
     1261 acattgcctt cgacttgagc ttcgtgttta tttacagtcc gcgccccggc acgcctgccg
     1321 ccaacctgca cgacgacacg ccgcacgaag aaaaagtgcg ccgcctcgaa gccttgaacg
     1381 aagtcatcga agccgaaacc gcgcgcatca accaaaccat gatcggcacg gttcaacgct
     1441 gcctggtcga aggcatctcc aaaaaagacc ccgaccaact gcaagcccgt accgccaaca
     1501 accgcgtcgt caacttcacc ggcacgcccg acatgattaa ccaaatgatc gatttggaaa
     1561 tcaccgaggc ctacaccttc tccctgcgcg gcaaagttgt cgaagcctaa accctcacgc
     1621 cgaaaaaatg ccgtctgaag cgtttcagac ggcattttgc cttgtatcgg cagacgacgg
     1681 cgcggccggg cggcttaatt tgccgcatcc cgatccgaca gccacgcgcg cacacgccgt
     1741 tccaccgctt cggcactcaa gcccaaatcg ttcaaaagtt ttttcggatc gccgtgtccg
     1801 gttacggtat cggcaacgcc caaaagcaaa acgggtttgc agatgccgtg tttcgccaat
     1861 acttccagca ccgcgccgcc tgcgccgccc tgttcggcgt tttcttcaag ggtaacgatg
     1921 cggtcgtggc ttcgggcaag gcggacaatc aactcttcgt ctatcggttt gacgaagcgc
     1981 atatcggcga cggtggcgtt cagtttttcg gcaaccgcca atgcgggggc gaccatactg
     2041 ccgaaggcaa tgaatgcggt tttctcacct tcgcggcgga tgatgccttt gccgatttca
     2101 acggtttcca tgccgtctga aaccggcacg cccgtacccg tgccgcgcgg atagcggacg
     2161 gcggcgggcg cgtctgcctg atagcaggtc gaaagcagca ggcggcattc attttcatcg
     2221 ctcggcgcgg cgacaatcat attcggaatg cagcgcaaaa agcttaaatc gtacaaaccg
     2281 gcatgggtcg ggccgtccgc gccgacgatg cccgcgcggt cgacggcaaa caaaacgggc
     2341 aggttttgca gggcgatgtc gtgcaccagt tggtcgtagg cgcgttgtaa aaaggtggaa
     2401 taaatcgcca cgacgggctt catcccttcg caagccaaac cgccggcaaa ggtaacggcg
     2461 tgctgctcgg cgatgccgac atcgaaatag cggtcgggga atcgttgttc aaactcaacc
     2521 aagccgctgc cctcgcgcat ggcgggggta atcgcaacca gtcgggaatc tgccgccgcc
     2581 cggtcgcaca gccatttgcc gaacacttgg gtataggtcg gtttggcggc gggcttgttt
     2641 tcagacggca tttgcgccgc gctttctttg ggcaggttgg cgacggcgtg gtatttgacg
     2701 gggtcgtttt cagcgagttt gtagccgttg ccctttttgg tgatgacgtg cagaagctgc
     2761 gggcctttgc gtccgcgcag gtcttccaat acatcgacca gattttcgac gttgtgtccg
     2821 tccacggggc cggtatagcg gaagccgaag ttttcaaaca aagacagtga ctgtttggcg
     2881 tgttcggctt cttcggcaag ggttttgatt ttatgttcga ctttttgggc aaactccatc
     2941 gcgccgggta ttttgtctaa taccttgccc gtttgcgctt tgacggtact caacaggccg
     3001 tgcatatcgc gcacgacgtt gctggcaagg tatttgggca acgcaccgac gttgggggaa
     3061 atcgacattt cgttgtcgtt gaggacgacc agcaaatcca catccatatc gcccgcgcag
     3121 ttcaaggcct caaacgcctg ccccgccgtc atcgcgccgt cgccgatgat ggcgacgctg
     3181 cggcggtcgc tgcccaagag tttgtctgcc gccgccatgc ccaacgccgc gccgatggat
     3241 gtggaagaat gccctacgcc gaacgcgtcg tattccgact cgctgcgttt tgggaagcca
     3301 gctaaaccgc cgtattggcg catggtgtgc atctggtttt tcctgcctgt caggattttg
     3361 tgcggatagc tttggtgtcc gacatcccat accagcttgt cttcgggcgt atcgtacaca
     3421 tagtgcaggg cgatggtcag ctcgaccgcg cccagattgc tggcgaaatg tccgccggtc
     3481 tgcccgacag attccagcag aaaggcgcgc agctcgccgg caaggcgcgg cagctgtttt
     3541 ttgtccagac ggcgcaaatc ttgcgggctg tcaatcaggt cgagtagggg gcttgggttc
     3601 atggtgtgtc ttttttatgt gtcgtccggg tgcaacggcc aattatatat caagagcgtg
     3661 cggctgacgg ctgattttgc cgtatgtcat tcgtcctgcc gcttggcgcg cgggtgggct
     3721 tcgtcataca ggcgggcgat gtggtcgaaa tcgagcttgg tataaatctg cgtggtcgaa
     3781 aggctgctgt gtccgagcag ctcctgcacc gcccggatgt cgcgcgaagc ctgcaacagg
     3841 tgtccggcgt agctgtggcg catcatatgc ggcgaaacgt gcctgccgtc gccgttttgc
     3901 gccgcccatt gcgccaaacg tttttggatt tggcgttggc tcaggcgcgt gccgttcctg
     3961 ccggtaaaca gggctttgcc gtccgatgcc gtctgacgca gcggcagata gtttttcagg
     4021 gcttccacgc ttttgccggt cagcggcacc tgccgctgct tgcgcccttt gccggtaacg
     4081 tgtacccacg cctcgtccaa atagacatca tctgcattca agccgtgtat ctcgctcacg
     4141 cgcaaaccgc tgccgtacat cagctcgaac agggcgtgat cgcgcaccgc cagcgggtcg
     4201 ccgccgtcca cgggcaaatc cagcatccgg ttcagccatt cctgcgacag ggctttgggt
     4261 acgcgctcgg gctgcttcgg cggtttgatg tcggcggtcg ggtcggtatg cagcagaccg
     4321 cgttccacca gccaaacaca atactgccgc caagacgaca gcttgcgcgc cagcgtccgc
     4381 gcattcaaac cgcgctgcga cagccgccgc aacgccgccg taaaatcgcg ccgcgacaag
     4441 tcctgcggca cgccgccttc atcttcagac ggcatttgtg ccaacagcgc aaacagttct
     4501 tccaaatcgc gccggtatgc cgccaccgtg tgctccgact tgccctcgcg cacgatgttt
     4561 tccaaataag cgtcaaaatg cgccgcaaac ccgtccaaaa ccataaccgc cccacacaaa
     4621 tatcaaaaaa acagtgaaaa cattatcata aacgacacac caaaaccccg aaccgcccaa
     4681 aatccgaccc gtccgcccgc cgttatcgtt aacataaaat caatgagccg tttatggttt
     4741 tttgccgcaa aaaacattat aatccgcctt atttacctat tgcccaagga gacacaaatg
     4801 gcactcgtat ccatgcgcca actgcttgat catgctgccg aaaacagcta cggcctgccc
     4861 gcgttcaacg tcaacaacct cgaacaaatg cgcgccatta tggaagccgc cgaccaagtc
     4921 aacgcgcccg tcatcgtaca ggcgagtgca ggtgcgcgca aatatgcggg cgcgccgttt
     4981 ttgcgccacc tgattctggc ggctgtcgaa gaatttccgc acatccccgt cgtgatgcac
     5041 caagaccacg gcgcatcgcc cgacgtgtgc caacgctcca tccaactggg cttttcctcc
     5101 gtgatgatgg acggctcgct gatggaagac ggcaaaaccc cttcttctta tgaatacaac
     5161 gtcaacgcca cccgtaccgt ggttaatttc tcccacgctt gcggcgtatc cgtcgaaggc
     5221 gaaatcggcg tgttgggcaa cctcgaaacc ggcgaagccg gcgaagaaga cggtgtaggc
     5281 gcagtgggca aactttccca cgaccaaatg ctcaccagcg tcgaagatgc cgtgcgtttc
     5341 gttaaagata ccggcgttga cgcattggcg attgccgtcg gcaccagcca cggcgcgtac
     5401 aaattcaccc gtccgcccac aggcgacgtg ttgcgtatcg accgcatcaa agaaatccac
     5461 caagccctgc ccaatacaca catcgtgatg cacggctcca gctccgttcc gcaagaatgg
     5521 ctgaaagtca tcaacgaata cggcggcaat atcggcgaaa cctacggcgt gccggttgaa
     5581 gaaatcgtcg aaggcatcaa acacggcgtg cgcaaagtca acatcgacac cgacttgcgc
     5641 cttgcttcca ccggcgcggt acgccgctac cttgccgaaa acccgtccga cttcgatccg
     5701 cgcaaatacc tgagcaaaac cattgaagcg atgaagcaaa tctgcctcga ccgctatctt
     5761 gcgttcggtt gcgaaggtca ggcaggcaaa atcaaaccgg tttccttgga aaaaatggca
     5821 agccgttatg ccaagggcga attgaaccaa atcgtcaaat aacaggttgc ttgtaaacaa
     5881 aatgccgtct gaaccgttgt tcggacggca tttgattttt gcttctttga cctgcctcat
     5941 tgatgcagta tgcaaaaaaa gataccataa ccaaaatgtt tatatattat ctattctgcg
     6001 tatgactagg agcaaacctg tgaaccgaac tgccttctgc tgcctttctt tgaccgccgc
     6061 cctgattctg accgcctgca gcagcggagg cggcggtgtc gccgccgaca tcggcgcggg
     6121 gcttgccgat gcactaacca caccgctcga ccataaagac aaaagtttgc agtctttgac
     6181 gctggatcag tccgtcagga aaaacgagaa actgaagctg gcggcacaag gtgcggaaaa
     6241 aacttatgga aacggcgaca gcctcaatac gggcaaattg aagaacgaca aggtcagccg
     6301 cttcgacttt atccgtcaaa tcgaagtgga cggacaaacc atcacgctgg caagcggcga
     6361 atttcaaata tacaaacaga accactccgc cgtcgttgcc ctacagattg aaaaaatcaa
     6421 caaccccgac aaaatcgaca gcctgataaa ccaacgctcc ttccttgtca gcggtttggg
     6481 cggagaacat accgccttca accaactgcc tgacggcaaa gccgagtatc acggcaaagc
     6541 attcagctcc gacgacccga acggcaggct gcactactcc attgatttta ccaaaaaaca
     6601 gggttacggc agaatcgaac acctgaaaac gcccgagcag aatgtcgagc ttgcctccgc
     6661 cgaactcaaa gcagatgaaa aatcacacgc cgtcattttg ggcgacacgc gctacggcgg
     6721 cgaagaaaaa ggcacttacc acctcgccct tttcggcgac cgcgcccaag aaatcgccgg
     6781 ctcggcaacc gtgaagataa gggaaaaggt tcacgaaatc ggcatcgccg gcaaacagta
     6841 gcatttgaaa aatgccgtcc gaacacgata gtttaccgtt cggacggcat ttttgcgcca
     6901 tactgcccta ggacacgacg gcacggcagg caagccggtt tcactatata atgccgtctg
     6961 aaccaacgag aaccacacca tgcaagccga tttcaaccgc cccgtcctcg ccgtcgatac
     7021 cggaacttcc tatttgtcgc tcgcgctgcg cgccgacggc gaaaccctcc tgttccatca
     7081 ggaggccggc agccgccagt ccgaactgat cctgccggaa atccgcaccc tattccgaaa
     7141 tgcgggcatt accgccgccg atttgggggc gattgtttat gcgaaaggtc ccggcgcgtt
     7201 taccggactg cgtatcggca tcggcgtggc gcaaggtttg gcaacgccat tcaatacgcc
     7261 tttaatcggc atccccacgc tcgatgccgc cgcctcgctg ccgccgccgc aaagctgcat
     7321 actcgccgct gcggacgcgc gtatgggcga agtgttttat gcgtggttcg acacgctgaa
     7381 ccgccgccgt ttgagcgatt atcaggtcgg gcgggcggca gacatccggc tgccggaggg
     7441 atgtgccttt tcagacggca taggcagcgc gttcgcgttg gaagaaacgc cgccgttttc
     7501 aggcaaaccc gatatgccga ccgccgccga cttcctcaat ctggcggcgg aaggcggttt
     7561 tcccgccgtc gctgctgcac actccgaact gctctacgtc cgcaacaaaa tcgccctaac
     7621 cgccaaagaa caggcggaac ggaaagcccg aacatgaaca tccgccgcgc ctcaccgtcc
     7681 gactgcgccg cactcgccgc gctcgatgcc gtctgcaacc cgtccgcgtg gacgcaacgc
     7741 caatttgagt ccgcattggt ttcgccgtcc gaacaggttt tcctcgcgga aaaagacggc
     7801 gggattgccg cctttatcgt ttggcagaac ctgcccgacg aatccgaact gcacctgatt
     7861 gccaccgcgc ccgaatgccg ccgccgtggc gttgcgtccg ccctgctcga atattggttc
     7921 gcacatctgc ccgaagacac gcaacgcctg ctgctcgaag tccgtgcagg caacaccgcc
     7981 gcacaggcac tgtacgcggc gcacggcttt accgatgcgg gcaggcggaa aaactattac
     8041 cgtacagccg acggtaaaac cgaagatgct gtcttaatgg agaaaatatg ttaagcgcgc
     8101 gctacctcca cctgcacgaa gctttgggtt taggcccgat gtggctgaaa caggccgccg
     8161 ccgtcctgcc gcccaaaaac acacccgcaa ccccggcaca ggcacgtcct caaaccgtcc
     8221 gcgccgcccc gatccgccct tcccaacccc ataacggtca ggcgcggctc gaaacgatga
     8281 aagcgttgga aaccgccgcc gtacatacgc gcaaacccgc gcctgaaacc gaaacgcccc
     8341 cgcccggcct ttcagacggc atcgcccccg ttcccgccgc ttcgggcata accaaacttg
     8401 ccgtcgtcag cctttgccca ccgattgagg atgcggttta cgggcaactg ttctacggca
     8461 aagcgggtgt tctgcttgac aacatactca aagccgtagg actggatgcc gcctatgtcc
     8521 acaaaacctg ttgggtgaaa accgccgccg tcggcaaccc gatgccgtct gaagcggcaa
     8581 tcgaaaccgc gacggtttcc gtcatgcagg aactcgacgg ctgccgcgcc cccgccgtcc
     8641 tattcctcgg acaggctttt gtccagcctg aacggcaaac gatgattgaa actttgtgcg
     8701 gcagccgtcc cttcttcatc atcgaccatc ccgcccggct gttgcgccaa cccgaactta
     8761 aagcccgcgc ctggcaggtg ttgaaacagt tgaaacgcgc cttgcggcaa ggcggcggca
     8821 gttgaagcgc accgcacggg gcggtagaat cgcaactgcg tcccaatatc tgacagaaag
     8881 cacaaaatga ccgatttccg ccaagatttc ctcaaattct ccctcgccca aaatgttttg
     8941 aaattcggcg aatttaccac caaagccgga cggcggtcgc cctatttctt caatgccggc
     9001 ctctttaacg acggcttgtc cacgctgcaa ctggcaaaat tttacgcaca atccatcatt
     9061 gaaagcggca tccgattcga tatgctgttc ggccccgcct acaaaggcat tattttggcg
     9121 gcggcaaccg cgatgatgct ggcggaaaaa ggcgtgaacg tcccgtttgc ctacaaccgc
     9181 aaagaagcca aagaccacgg cgaaggcggc gtgttggtcg gtgcgccgct taaaggccgc
     9241 gtgctgatta tcgacgacgt gatttccgcc ggcacatccg tacgcgaatc gatcaagctg
     9301 attgaagcgg agggcgcaac ccccgccggt gtcgccatcg cgctcgatcg catggaaaaa
     9361 ggcacgggtg aattgagcgc ggttcaggaa gtggaaaaac aatacggtct gcccgtcgcc
     9421 cccatcgcca gcctgaacga tttgtttatt ctgttgcaaa acaaccccga attcggacag
     9481 ttcctcgaac ccgtccgagc ctaccgtcgg cagtacggcg tagaataaaa acaaagcata
     9541 tgccgtccga accgccttac gcctcagacg gcatcaaacc tgacacacac gaggaaatac
     9601 catgcccgcc tgtttctgcc cccactgcaa aacccgtctc tgggtcaaag aaacccaact
     9661 caatgtcgcc caaggcttcg tcgtctgcca aaaatgcgaa ggactgttta aagccaaaga
     9721 ccatctggca agcacgaaag aacccatatt caacgatttg cccgaggctg tttcggatgt
     9781 caaactcgtt caccgcatcg gcacgcgcgc cattggcaag aaacagattt cccgcgacga
     9841 aatcgccggc atcctcaacg gcggtacaac cctgcacgat acgccgcccg caaccgccgc
     9901 cacccctgcc gccgcaccgc aggttgccgt accgcccgcc gcgcctgccc gtcaggaagg
     9961 gttcaactgg acgattgcaa ccctgtttgc ccttatcgtc ctcattatgc agctttccta
    10021 cctcgtcatc ctatgatcgt gcccgacctc tttgtcgccc acttccgcga agccgtcccc
    10081 tacatccgcc aaatgcgcgg caaaacgctg gtcgccggca tagacgaccg cctgctcgaa
    10141 ggtgatacct taaacaagct cgccgccgac atcgggctgt tgtcgcaact gggcatcagg
    10201 ctcgtcctca tccacggcgc gcgccacttc ctcgaccgcc acgccgccgc gcaaggccgc
    10261 acgccgcatt attgccgggg cttgcgcgtt accgacgaaa cctcgctcga acaggcgcag
    10321 cagtttgccg gcaccgtccg cagccgtttt gaagccgcat tgtgcggcag cgtttccggg
    10381 ttcgcgcgcg cgccttccgt cccgctcgta tcgggcaact tcctgaccgc ccgtccgata
    10441 ggtgtgattg acggaaccga tatggaatac gcgggcgtta tccgcaaaac cgacaccgcc
    10501 gccctccgtt tccaactcga cgcgggcaat atcgtctggc tgccgccgct cggacattcc
    10561 tacagcggca agaccttcta tctcgatatg cttcaaaccg ccgcctccgt cgccgtctcg
    10621 cttcaggccg aaaaactcgt ttacctgacc ctttcagacg gcatttcccg ccccgacggc
    10681 acgctcgccg aaaccctctc ggcacaggaa gcgcaatcgc tggcggaaca cgccggcggc
    10741 gaaacgcgac ggctgatttc gtccaccgtt gccgcgctcg aaggcggcgt gcatcgcgtc
    10801 caaatcctca acggtgcctc cgacggcagc ctgctgcaag aactcttcac ccgcaacggc
    10861 atcggcacat ccattgccaa agaagccttc gtctccatcc ggcaggcgca cagcggcgac
    10921 atcccgcaca tcgccgccct catccgcccg ctggaagaac agggcatcct gctgcaccgc
    10981 agccgcgaat acctcgaaaa ccacatttcc gaattttcca tcctcgaaca cgacggcaac
    11041 ctgtacggtt gcgccgccct gaaaaccttt gccgaagccg attgcggcga aatctcctgc
    11101 cttgccgtct cgccgcaggc acaggacggc ggctacggcg aacgcctgct tgcccacatt
    11161 atcgataagg cgcgcagtat gggcataagc aggctgttcg ccctctccac aaataccggc
    11221 gaatggtttg ccgaacgcgg ctttcagacg gcatcggaag acgagttgcc cgaaacgcgg
    11281 cgcaaagact accgcagcaa cggacgaaac tcgcatattc tggtacgtcg cctgcaccgc
    11341 tgaccgcaac ggaaagccgc cgcagaaatg ccgtctgaac cccgtttcag acggcatttc
    11401 cccgattata aagacctgcc caaccctcaa ggaccccgat gaaatcctac cccgacccct
    11461 accgccattt tgaaaacctc gattccgccg aaacgcaaaa cttcgctgct gaagcgaatg
    11521 ccgaaacgcg cgcgcgtttt ttaaacaacg acaaggcgcg cgcgctttca gacggcattt
    11581 tgaatcaaat gcaggacacg cggcagattc cgttttgtca ggaacaccgc gcgcggatgt
    11641 accatttcca tcaggacgcg gagtatccga agggcgtgta ccgcgtgtgt gcggcggcga
    11701 cgtatcgttc cggctatccc gagtggaaaa tcctgttttc agtggcggat ttcgacgagc
    11761 tgctcggcga cgatgtgtat ttgggcggcg tgtcgcactt ggtggaaaag cccgaccgtg
    11821 cgttgttaac actgagcaaa tcgggcggcg atacggcgta cacgctggaa gtggatttgg
    11881 aagcagggga gttggtagaa ggcggttttc actttccggc aggcaaaaac catgtgtcgt
    11941 ggcgcgatga aaacagcgtg tgggtgtgtc cggcctggga cgagcggcag ttgaccgaat
    12001 cgggctatcc gcgcgaggtg tggctggtgg aacgcggcaa aagtttcgag gaaagcctgc
    12061 cggtgtacca aatcggcgaa gacgggatga tggtgaacgc gtggcgttac ctcgatccgc
    12121 agggttcgcc gattgatttg attgaagcgt ctgacggttt ttacaccaaa acctatttgc
    12181 aggtgtcggc cgaaggcgag gcgaaaccgt taaacctgcc tgctgattgc gatgtggtcg
    12241 gctatctggc ggggcatctt ttgctgacgc tgcgcaagga ctggcaccgc gcgaaccaaa
    12301 gctatccgag cggcgcgctg gtagcggtga aactgaatcg cggcgaaatc ggggcggcgc
    12361 agcttttgtt tgcgcctgat gaaacgcagg cattggaaag cgtggaaacg accaagcgtt
    12421 ttgtcgtggc gagtctgctg gaaaacgtac aaggccgtct gaaagcgtgg cgttttaccg
    12481 acggcaaatg gcaggaagcc gaactgccgc gcctgccctc gggcgcgttg gaaatgaccg
    12541 accaaccgtg gggtggcgac gtggtttacc ttgccgccag cgatttcacc acgccgctga
    12601 cgctgtttgc gctggatttg aacgtgatgg aactgaccgt catgcgccgt cagccgcagc
    12661 agttcgattc agacggcatc aacgtgcagc agttttggac gacttcggcc gacggcgagc
    12721 gtattcctta ttttcacgtc ggcaaaaacg ccgcccccga cacgccgact ttggtttatg
    12781 catacggcgg ttttggcatt cccgagttgc cgcattattt gggcagcgtc ggcaaatatt
    12841 ggctggaaga gggcaatgcc tttgtgttgg caaacatccg cggcggcggc gagttcggcc
    12901 cgcgctggca tcagacggcg cagggaatca gcaaacacaa aagcgtcgac gatttgcttg
    12961 ccgtcgtgcg cgatttgtcc gaacgcggta tcagttcgcc ccaacacatc ggcttgcagg
    13021 gcggcagcaa cggcggcctg attaccgccg ccgccttcgt gcgcgaaccg caaagcatcg
    13081 gcgcgctggt gtgcgaagtg ccgctgaccg atatgatccg ctatccgctg ctctccgccg
    13141 gcgcaagctg gacggacgaa tacggcaacc cgcagaaata cgaagtctgc aaatgccggt
    13201 tgggcgaatt gtcgccgtat cacaatcttt cagacggcat cgattatccg ccagcgctca
    13261 ttaccaccag cctcagcgac gaccgcgtcc atcctgccca cgcgctcaag ttctacgcca
    13321 aactgcgcga aacctccgcg caatcttggc tctactcacc tgacggcggc ggccataccg
    13381 gcaacggcac ccaacgcgaa tccgccgacg aactcgcctg cgtgttgctg tttttgaaag
    13441 agtttttggg ctaagggcgg ggagcggcac tgccgccgcg aatgaaaaaa ggtcgtctga
    13501 aactgctttt tcagacgacc ttttttaatg gttgtttcaa atcaaaatat ctatgccgcc
    13561 ggccccatca gcacttcttc acatccgaag gcaaaaatcc gtaatgccgt ctgaacgctt
    13621 cgttgaaccg tcccgcgtgg cggtagccgc aaaagtgcat ggcggcttgg acggtgctgc
    13681 cggattcgat gagggcgagc gcgtgttcca gccgcaggcg gcgcaggcat ccggcgacgg
    13741 tttcgccggt ttgcgctttg aaatagcgtt tcaggtagca ttcgttcagt ccgacgcggc
    13801 gggcgatttc ggcgatggtc agcggacggg cgaattcgtg ttgcaggatg tcggcggctt
    13861 cgtctatgcg ccgacggcgg taaccgttgt cgtggcggcg gaaggtgaag cgcaataatc
    13921 gggcggagag ttccagcgcg gcggcttcgt cggcaagcag gccgaagccg tccgattcga
    13981 acgggcgttg cagcagtggg caggccgccg ccgtcagtgc cgccgcgttt tgcgccagcc
    14041 gttgcagggc gaatcggcct atcgtttgcg gcgaaaacag gcgttcgtcc agcaagcctt
    14101 cgtcgtgcca gcggcgcagt ttttccagcg aaaaatccaa atgcagcgcg cacatgccgc
    14161 tgttgtcggg cagcagggtt tcggatacgt ccgccaactc gccgcgtacc agccagattt
    14221 cgccggcaga cgggcggtat tccctgccgc ccatttgtaa ccggttctgc cccgacacca
    14281 tgacgaacaa ggcgcagttg tggctgaaat tgtggatttc ggtgggaaac gcgcccgttc
    14341 cgccgccgcg catccgcgac aaggtgatgc ccgaatcgaa gcggttgatg cacatttcca
    14401 gatgcaaacc gggctgtttt gcctgcgcaa tgagcgcgct gtcggaacag ccgtccaacg
    14461 cccagccgga tttatcggag cggacatagg tttggtactg gcggtagatg gcggcggtgt
    14521 tcatgattgg ataggaacga gttgtctaac aaatgaatta aataggaatt attaccaata
    14581 atcaagcgca gggattggtt gaaacggaaa aggtcgtctg aaagggtgtt tcagacgacc
    14641 ttttccgtat cgggaatttg ttttgccgta tcgggaattt tgcgttttgc ggcgtggttt
    14701 ctgcaggttg tttgcttaat aataaacatt cttattcgta tgcaaaggaa ccgcacaccg
    14761 tgaaaccgcg tttttattgg gcagcctgcg ccgtcctgct gaccgcctgt tcgcccgaac
    14821 ctgccgccga aaaaactgta tccgccgcat ccgcatctgc cgccacactg accgtgccga
    14881 ccgcgcgggg cgatgccgtt gtgccgaaga atcccgaacg cgtcgccgtg tacgactggg
    14941 cggcgttgga tacgctgacc gaattgggcg tgaatgtggg cgcaaccacc gcgccggtgc
    15001 gcgtggatta tttgcagcct gcatttgaca aggcggcaac ggtggggacg ctgttcgagc
    15061 ccgattacga agccctgcac cgctacaatc ctcagcttgt cattaccggc gggccgggcg
    15121 cggaagcata tgaacagttg gcgaaaaacg cgaccaccat agatctgacg gtggacaacg
    15181 gcaatatccg caccagcggc gaaaagcaga tggagacctt ggcgcggatt ttcggcaagg
    15241 aagcgcgcgc ggcggaattg aaggcgcaga ttgacgcgct gttcgcccaa acgcgcgaag
    15301 ccgccaaagg caaaggacgc gggctggtgc tgtcggttac gggtaacaag gtgtccgcct
    15361 tcggcacgca gtcgcggttg gcaagttgga tacacggcga catcggccta ccgcctgtag
    15421 acgaatcttt acgcaacgag gggcacgggc agcctgtttc cttcgaatac atcaaagaga
    15481 aaaaccccga ttggattttc atcatcgacc gtaccgccgc catcgggcag gaagggccgg
    15541 cggctgtcga agtattggat aacgcgctgg tacgcggcac gaacgcttgg aagcgcaagc
    15601 aaatcatcgt catgcctgcc gcgaactaca ttgtcgcggg cggctcgcgg cagttgattc
    15661 aggcggcgga gcagttgaag gaggcgtttg aaaaggcaga acccgttgcg gcggggaaag
    15721 agtagggagt cgtctgaaaa cggagtttcc gaaggaagcg gggggtttct gcgaagctaa
    15781 agtgcggttt caacgaattg aaaagcagcc tgtatgttga aaataccgc
//
LOCUS       DAWGNT010000031        15312 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.031, whole genome shotgun sequence.
ACCESSION   DAWGNT010000031 DAWGNT010000000
VERSION     DAWGNT010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15312
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.031"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..139)
                     /locus_tag="WHR98_000720"
     CDS             complement(<1..139)
                     /locus_tag="WHR98_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HEZ2307427.1"
                     /translation="MSVQTVTYNKFFMNTNQPAVYDPLTRTLHWLTVAGFIGIPTTIV
                     LW"
     gene            380..1534
                     /gene="obgE"
                     /locus_tag="WHR98_000721"
     CDS             380..1534
                     /gene="obgE"
                     /locus_tag="WHR98_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEZ2307428.1"
                     /translation="MKFIDEAKIEVAAGKGGNGATSFRREKFVPRGGPDGGDGGKGGS
                     VWAEADENTNTLVEYRFVKRYQAKNGEKGHGSDRYGAGADDIVLKMPVGTLIRDLDTD
                     EIVADLTYHGQRVCLAKGGKGGLGNIHFKSSVNRAPKQSTPGEEGEARSLQLELKVLA
                     DVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRIDENHSFVMADIPGLI
                     EGAAEGAGLGHRFLKHLSRTGLLLHVVDLAPFDETVNPAEEALAIINELRKYDEELYG
                     KPRWLVLNKLDMLDEEEAQTRTAAFLEAVGWDYPKPDDRFQFDMETPRLFQISALTHQ
                     GTQELVHQINQYLTEKKRIEAEKAEAEKAAANVEIIEQQPKTDTGVFKPE"
     gene            1617..2666
                     /locus_tag="WHR98_000722"
     CDS             1617..2666
                     /locus_tag="WHR98_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEZ2307429.1"
                     /translation="MSSNQYIQSLELTNFTVLPNDTFEFSENLNVIVAENGCGKTHLL
                     KILYSLLEVTSNTKNRLLKTELQKSFADKLLNVFRPDSLGRLSKRLQGRGRTEIVLKL
                     QNGTTHSSLNFSSNSSSQVNVQSIGLKENEYTPTPIFLPSRELITLCPWFTSLYQNQS
                     IPFEETWFDTCMQLNHPLAKGPRETKIRELLEPIENAMGGKVSEEQGRFYLSLTNTGG
                     KIEAPLVAEGLRKFVMIARLIATGALLDKGYLFWDEPEANLNPKLIKVAARIIWSLSQ
                     QGIQVFIATHSLFLLRELELLKLENNTDLPVRFFSLIASDDGTKVEQGNSINDLNTLI
                     LLDENIMQADRYLNI"
     gene            3354..4775
                     /locus_tag="WHR98_000723"
     CDS             3354..4775
                     /locus_tag="WHR98_000723"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEZ2307430.1"
                     /translation="MTTIYNTLTRQKEPFSPIDPENVRMYVCGMTVYDYCHLGHARVM
                     VVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGKLTARFIQAMHEDADA
                     LGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSL
                     DDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFG
                     DTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFI
                     RVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTR
                     LYTTLKNTPPADPMPSEAGDDYTRRFYVAMNDDFDTVKAVAVLFELAGEVNKTNDAQL
                     AGRLKALGGIIGLLQRDPTEFLQGSAASDGLSNEEIEDLIARRKQARADKNWAESDRI
                     RDLLNEHKIILEDNAGGTTWRRG"
     gene            4946..5725
                     /gene="xth"
                     /locus_tag="WHR98_000724"
     CDS             4946..5725
                     /gene="xth"
                     /locus_tag="WHR98_000724"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEZ2307431.1"
                     /translation="MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADL
                     SADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFDR
                     LSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLK
                     NWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGW
                     RIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVMEYDYAAE"
     gene            5712..6056
                     /locus_tag="WHR98_000725"
     CDS             5712..6056
                     /locus_tag="WHR98_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307432.1"
                     /translation="MLPNKVLGKYDWNVDGKTGIGAAWVVAAFILPILVWAIFMLSRM
                     QGWLAPTKANPTWALVWLLICMPCLLIASKCLGWKGWRRVVNIFACLTVCAILSVPAS
                     LLIAFTLRDLLK"
     gene            6067..6597
                     /locus_tag="WHR98_000726"
     CDS             6067..6597
                     /locus_tag="WHR98_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEZ2307433.1"
                     /translation="MQGFELEDLTLWLIRDAGEDQMWIDRWAISYPVVQMSEASAGQS
                     IGEWQAGLRTAFERIRGKYVAVVAHGAGAAAFLAWLYQADILTRKKIANIILVPQRPD
                     IFPDDAEHTFQRVRCPCRAALVVPEHGGVPHGWAQKQADLWNARLLVSPHSGSLNGML
                     GGWQWGMKLMQEMLLA"
     gene            complement(6690..7805)
                     /gene="asd"
                     /locus_tag="WHR98_000727"
     CDS             complement(6690..7805)
                     /gene="asd"
                     /locus_tag="WHR98_000727"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEZ2307434.1"
                     /translation="MKVGFVGWRGMVGSVLMQRMQEENDFAHIPEAFFFTTSNVGGAA
                     PDFGQAAKTLLDANDVAELAKMDIIVTCQGGDYTKSVFQALRDSGWNGYWIDAASSLR
                     MKDDAIIVLDPVNRNVIDNGLKNGVKNYIGGNCTVSLMLMALGGLFQNDLVEWATSMT
                     YQAASGAGAKNMRELISGMGAVHAQVADELADPSSAILDIDRKVSDFLRSEDYPKANF
                     GVPLAGSLIPWIDVDLGNGQSKEEWKGGAETNKILGRSDNPTVIDGLCVRIGSMRCHS
                     QALTLKLKKDLPISEIEAILAGANDWVKVIPNEKEASIRELTPAKVTGTLSVPVGRIR
                     KLGMGGEYISAFTVGDQLLWGAAEPLRRVLRIVLGSL"
     gene            7981..8562
                     /locus_tag="WHR98_000728"
     CDS             7981..8562
                     /locus_tag="WHR98_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEZ2307435.1"
                     /translation="MEEKNDYTDAASDNRNGQEIEVGIAGAGDRILAALLNQLFTFLV
                     LLVPFAGLIAFAIKNEGRIGGSEEIFGLLLGMTSFWVGLAGILVYTVVQIYYMSRDGQ
                     SLGKKIMRIRVLKTDGRNPGFVGTVLVREIAWSVLVAIIAAVIGLIAGDNGENAINLL
                     AFLANFVLLFMVKRDRRTLYDILADTVVVKLPK"
     gene            complement(8624..9478)
                     /gene="folD"
                     /locus_tag="WHR98_000729"
     CDS             complement(8624..9478)
                     /gene="folD"
                     /locus_tag="WHR98_000729"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEZ2307436.1"
                     /translation="MSAQLINGKEVSQKRLQAVAEAVAQRQQDNLHTPCLAVVLVGGD
                     PASAVYVRNKKTACQKCGIKSLSYELPESTSQEELLALVDRLNADSEVDGILVQLPLP
                     KHLDSQAVLERISPDKDVDGFHPYNVGRLAVKMPLMRPCTPKGVMTLLEAYGIDPKGK
                     KAVVVGASNIVGRPQALELLLARATVTVCHSATENLADEVAGADILVVGVGIPNFVKG
                     EWIKPGAVVIDVGINRLDDGSLCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTL
                     HAASLHDA"
     gene            9701..9778
                     /locus_tag="WHR98_000730"
     tRNA            9701..9778
                     /locus_tag="WHR98_000730"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9736..9738,aa:Pro,seq:tgg)
     gene            9803..9879
                     /locus_tag="WHR98_000731"
     tRNA            9803..9879
                     /locus_tag="WHR98_000731"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9837..9839,aa:Arg,seq:tct)
     gene            9907..9982
                     /locus_tag="WHR98_000732"
     tRNA            9907..9982
                     /locus_tag="WHR98_000732"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9940..9942,aa:His,seq:gtg)
     gene            10118..10624
                     /gene="rfaE2"
                     /locus_tag="WHR98_000733"
     CDS             10118..10624
                     /gene="rfaE2"
                     /locus_tag="WHR98_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase"
                     /protein_id="HEZ2307437.1"
                     /translation="MVDAWSVPDFESKICPPEALAARLALLPRPLVFTNGCFDILHRG
                     HVTYLAQARSMGDALVLALNTDASVRRLGKGGDRPVNPLENRAAVAAALESVDLVTWF
                     DGDTPAALIEAVKPEILVKGGDWAADKIVGAAETLARGGQVFSIPFLHQTSTTKTLAK
                     IRAAEGGK"
     gene            10621..12399
                     /locus_tag="WHR98_000734"
     CDS             10621..12399
                     /locus_tag="WHR98_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/type III pantothenate kinase"
                     /protein_id="HEZ2307438.1"
                     /translation="MTVLKPSHWRVLAELADGLPQHVSQLARMADMKPQQLNGFWQQM
                     PAHIRGLLRQHDGYWRLVRPLAVFDAEGLRELGERSGFQTALKHECASSNDEILELAR
                     IAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAA
                     VACRRALSRLGLDVQIKWPNDLVVGRDKLGGILIETVRTGGKTVAVVGIGINFVLPKE
                     VENAASVQSLFQTASRRGNADAAVLLETLLVELDAVLLQYARDGFAPFVAEYQAANRD
                     HGKAVLLLRDGETVFEGTVKGVDGQGVLHLETAEGKQTVVSGEISLRSDDRPVSVPKR
                     RDSERFLLLDGGNSRLKWAWVENGTFATVGSAPYRDLSPLGAEWAEKADGNVRIVGCA
                     VCGEFKKAQVQEQLARKIEWLPSSAQALGIRNHYRHPEEHGSDRWFNALGSRRFSRNA
                     CVVVSCGTAVTVDALTDDGHYLGGTIMPGFHLMKESLAVRTANLNRHAGKRYPFPTTT
                     GNAVASGMMDAVCGSVMMMHGRLKEKTGAGKPVDVIITGGGAAKVAEALPPAFLAENT
                     VRVADNLVIHGLLNLIAAEGGESEHT"
     gene            12512..13336
                     /locus_tag="WHR98_000735"
     CDS             12512..13336
                     /locus_tag="WHR98_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEZ2307439.1"
                     /translation="MKWLFTLLAVLNIAVFGGTVGYKLAVKATGGVPENRAVENTPPA
                     TPAADNAAASVEDTAALLKPGDILTEEQAEQLRLKKEAEQKKLREKKQREEKARREKL
                     AAEKAQAERENGAADALCAAQASLTMDEDDYHRIKGLLGKWSHVASRSVEKRTAKAKP
                     ADKTYRVVLPVSADAENQAAELSAKGFNPIPFDGALSLGVGNSRENAQALQNRLAGAG
                     FGGAHIVEHFAEADRQDDSLSVSRMTVLFTGVNAADADEIRKITSLYGKLNLKSCK"
     gene            complement(14099..14887)
                     /locus_tag="WHR98_000736"
     CDS             complement(14099..14887)
                     /locus_tag="WHR98_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEZ2307440.1"
                     /translation="MLTLYSETFPSRLLLGTAAYPTPEILKQSIQTAQPAMITVSLRR
                     AGSGGEAHGQGFWSLLQETGVPVLPNTAGCQSVQEAVTTAQMAREVFETDWIKLELIG
                     DDDTLQPDVFQLVEAAEILIKDGFKVLPYCTEDLIACRRLLDAGCQALMPWAAPIGTG
                     LGAVHAYALNVLRERLPDTPLIIDAGLGLPSQAAQVMEWGFDGVLLNTAVSRSGDPVN
                     MARAFALAVESGRLAFEAEPVEARDKAQASTPTVGQPFWHSAEY"
     gene            complement(15101..15295)
                     /gene="thiS"
                     /locus_tag="WHR98_000737"
     CDS             complement(15101..15295)
                     /gene="thiS"
                     /locus_tag="WHR98_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEZ2307441.1"
                     /translation="MNIILNGGPAELHGTSVADLIAQTAPQKPFAVAVNTVFVPKGAY
                     AETVLNENDKIDIVRPVVGG"
BASE COUNT         3647 a         3879 c         4266 g         3520 t
ORIGIN      
        1 tccacaggac aatggtggtc ggaatgccga tgaaaccggc aacggtcagc cagtgcagcg
       61 tacgtgtcaa cgggtcgtaa acggcaggtt ggtttgtgtt cataaaaaac ttattatatg
      121 taacggtttg aacggacatt ccgtcgggtc ggaatgtcaa aaaggcgcga ttgtaccaaa
      181 gaagttggac ataattttgt ttgcaggctg aagatttgct taaaaattca ttaagatggg
      241 cggaacaaat agtttgggta cggcgtgttg aaataccgct tatcccttat aatagcgtcc
      301 gaaattctgt tcggacggca tcaaaacaca cggtaatccg tctgaacccc catttgaaac
      361 caacaaacaa gagcattgaa tgaaattcat cgacgaagca aaaatcgaag tcgccgcagg
      421 caaaggcggt aatggcgcaa ccagtttccg ccgcgaaaaa ttcgtaccgc gcggcggccc
      481 ggacggcggc gacggcggca aaggcggtag cgtctgggcg gaagccgacg aaaacaccaa
      541 caccctcgtc gaataccgct tcgttaaacg ctaccaagcc aaaaacggcg aaaaaggcca
      601 cggttccgac cgttacggcg caggtgcgga cgacatcgtc ctcaaaatgc ccgtcggcac
      661 cctcatccgc gacctcgaca ccgacgaaat cgttgccgac ctcacttacc acggacagcg
      721 cgtctgccta gccaaaggcg gcaaaggcgg cttgggcaac atccacttca aatcctccgt
      781 caaccgcgcc ccaaaacaat ccacgcccgg cgaagaaggc gaagcccgtt ccctgcaact
      841 cgaactcaaa gtcctcgccg atgtcggctt attgggtatg cccaacgccg gcaaatccac
      901 cctgattacc gccgtatccg ccgcacgccc caaaatcgcc aactacccct tcaccaccct
      961 gcatccaaac ttaggcgtgg tacgcatcga cgaaaaccac agcttcgtga tggccgacat
     1021 ccccggcctg attgaaggcg cggcagaagg cgcgggtttg gggcatcgtt tcctcaaaca
     1081 cttatcgcgc accggattat tgctgcacgt cgtcgatttg gcgcccttcg acgaaaccgt
     1141 caaccctgcc gaagaagcac ttgctatcat caacgaattg cgcaaatacg atgaagaact
     1201 ttacggcaaa ccgcgctggc tggtgctgaa taaactcgac atgcttgacg aagaagaagc
     1261 ccaaacgcgc actgccgcct tcctcgaagc cgtcggctgg gactacccca aacccgacga
     1321 ccgtttccaa tttgacatgg aaaccccgcg cctcttccaa atcagcgcgc tgacccacca
     1381 aggcacgcag gaattggtac accaaatcaa ccaatacctg accgagaaaa aacgtatcga
     1441 agctgaaaaa gccgaagcgg agaaagcagc ggcaaatgtt gaaattatcg aacagcagcc
     1501 taaaacggat acgggcgtgt ttaagccgga gtgaaaaaag aaagggtttc agacgatatt
     1561 tgttctacaa aaggttgttt gaaacaattt taaagcaaga ttgaaatgga ttaaaaatgt
     1621 catctaacca atatatccag tcgcttgagt tgacaaactt taccgttctt ccaaacgata
     1681 cttttgaatt ttctgaaaat ctcaatgtta ttgttgccga aaacggttgt ggcaaaacac
     1741 atttgttaaa aattttatac agcctgctag aagtaacatc taacaccaaa aacagattac
     1801 tgaaaacaga attgcaaaaa agttttgccg ataaattact gaatgttttc cgtcccgatt
     1861 ccttgggcag gttgagcaaa cgtttgcagg ggcgcgggcg tacggaaatc gttttaaaac
     1921 tgcaaaacgg cactacgcat agtagtctga atttttccag taactcatca tcgcaagtca
     1981 atgttcaaag catcggattg aaagaaaatg aatatactcc gacacctatc ttcttaccca
     2041 gccgcgaatt aattacactt tgcccttggt tcacttcttt gtatcaaaac caaagcatcc
     2101 ctttcgaaga aacttggttt gatacctgta tgcaattaaa tcacccgctt gccaaaggcc
     2161 ccagagaaac aaaaattcga gaattgctcg aacctattga gaacgcgatg ggcggaaaag
     2221 tatctgaaga acaaggaagg ttttatctat cgctgacaaa tacgggcggt aagattgaag
     2281 cacctttggt agcagagggt ttgcggaaat ttgtcatgat tgcccggtta atcgcaacag
     2341 gggcattgct ggataaaggc tatctatttt gggatgaacc ggaagctaat ctgaatccta
     2401 aattgatcaa agtggctgcc cgtattattt ggtctttatc tcaacagggt attcaggttt
     2461 ttattgcaac acactcttta ttcttattga gagaattgga acttttgaag cttgaaaata
     2521 acacggattt acctgtacgt tttttctcgt tgattgcttc cgatgatgga acaaaagtgg
     2581 agcaagggaa cagtattaat gatttgaaca cattgatatt gttagatgaa aacattatgc
     2641 aggcagacag gtatctgaat atttgaggtt aagctatgac tacaatcaca gaaaagagat
     2701 taacctttgc ttttcctgaa gattattacg ttaccaagta tgacgaatgg gaacattata
     2761 aaatttttca gaacagttgt aatttacgta ataaaattga tacaaatgaa aagggaaaga
     2821 acgggataaa tcaaagtgta gatgacgata atggcagctc aggtgtagat ataatagccc
     2881 ttcatgaatc gacactttgg ctaatcgaaa ttaaagatta ttaccgactt gggcttgagc
     2941 caaatgccca atcaatagat gaaaaacttt ctgacctacc atatttaatc gcaagaaaaa
     3001 ttcgagattc attggcagga ttggtttctg ctaaatttaa agcagaaaaa caggaagaaa
     3061 aagatttttc tcgcttggct ttagattgta acgaaataaa aatagtcctt catattgaaa
     3121 tgcctagtat aagaagtaaa ctttatccct cgtcatcaga tttagcaaac ttattaaaag
     3181 ataagtttaa attatcagaa tttacaaaaa attttgcaaa ctgttatgca gaaccaattt
     3241 tcacaaatat cagccatatt aataatccgc aactacgtaa tgttccttgg tccgtatcta
     3301 caggaacaga acagaaatta tcatccgagc aacaaagatt aatccataat cccatgacca
     3361 ccatctacaa caccctaacc cgtcaaaaag aacccttttc ccccatcgac cctgaaaacg
     3421 tgcgtatgta cgtctgcggt atgaccgttt acgattactg ccatttggga cacgcccgcg
     3481 tgatggtggt gttcgacatg attgcccgtt ggttgcgcga gtgcggctat ccgctcactt
     3541 atgtacgcaa catcaccgac atcgacgata aaatcattgc ccgcgcggct gaaaacggcg
     3601 agaccatcgg caaactgact gcgcgtttca tccaagccat gcacgaagat gccgatgctt
     3661 tgggcgtgtt gcgtccggat attgagccga aggcaacgga aaacattccg caaatgattg
     3721 ccatgattga aaccctgatt caaaacggca aggcatatcc tgccgcaaat ggcgacgttt
     3781 actacgccgt gcgcgagttt gccgcttacg gacaattgtc gggcaaatcg ttggacgacc
     3841 tgcgtgcggg cgaacgcgtg gaagtggacg gtttcaaacg cgatccgctt gattttgtgt
     3901 tgtggaaagc cgccaaagca ggcgaaccgg cgtgggaaag cccgtggggc aacggccgtc
     3961 cgggttggca cattgaatgc tctgccatga gtgaaaacct gttcggcgat accttcgaca
     4021 tccacggcgg cggcgcggat ttgcagtttc cgcaccacga aaacgaaatt gcccaaagcg
     4081 tcggcgcgac ggggcatacc tgcggtcatc atcacgcgca aacccaccac gggcaaagca
     4141 tcgccagcca cgtcaaatac tggctgcaca acggctttat ccgcgtggac ggcgaaaaga
     4201 tgtccaaatc gctgggcaac ttcttcacca tccgcgaagt gttgaaacaa tacgatccgg
     4261 aagtcgtgcg cttcttcatc ctgcgcgccc actaccgcag cccgttgaac tattccgacg
     4321 cgcatttgga tgatgcaaaa ggcgcgttga cgcgtttgta tacgactttg aaaaatacgc
     4381 cgcccgccga tccgatgccg tctgaagccg gcgatgacta cacgcgccgc ttttatgttg
     4441 cgatgaatga tgattttgat acggtgaaag cggtggcggt gttgttcgaa cttgccggcg
     4501 aagtgaacaa aaccaatgac gcgcaactgg caggccgtct gaaagccttg ggcggcatca
     4561 tcggcctgct gcaacgcgac ccgaccgagt tcctgcaagg cagcgcggct tcagacggcc
     4621 tctccaacga agaaatcgaa gacttgatcg cccgccgcaa acaggcgcgc gccgataaaa
     4681 actgggcgga atccgaccgc atccgcgacc ttctgaacga acacaaaatc attttggaag
     4741 acaacgccgg cggcacgact tggcggcgcg gttgaactgt atcggaaagg gcaaaagtac
     4801 cgccttttgc tctttttccg ttttcagacg gcatttcccg cttgaagccc cgccgttttc
     4861 agcaggcagg gccgaatggg aaatgccggg cggcgcaccg ggtgctgctt tgtgtatggg
     4921 aacattgtga gaacttattt ttattatgct taaaatcatt tccgccaacg tcaacggcat
     4981 ccgctccgcc tacaaaaaag gtttttacga atatatcgcc gcatcgggcg cggacattgt
     5041 ctgcgtgcag gaactcaaag cgcaggaggc tgatttgtct gccgatatga aaaatccgca
     5101 cgggatgcac ggccattggc attgcgccga gaagcgcggt tacagcggcg tggcggtgta
     5161 cagcaaacgc aaacccgaca atgtgcaaat cggtatgggc attgaagaat tcgacaggga
     5221 agggcggttt gtgcgttgcg atttcgacag gttgagcgtt atttcgcttt acttgcccag
     5281 cggcagcagc gcggaagaac gccagcaggt gaaataccgt ttccttgatg cgttttaccc
     5341 tatgctcgaa gcgatgaaaa acgaaggacg cgacattgtc gtttgcggcg actggaacat
     5401 cgcccaccaa aacatcgacc tgaaaaactg gaaaggcaat cagaaaaatt cgggcttcct
     5461 accggaagaa cgcgagtgga taggcaaggt tatccacaag ctcggttgga cggatatgtg
     5521 gcgcacgctt tatcccgatg tgccgggcta cacgtggtgg agcaaccgcg ggcaggcgta
     5581 tgcgaaagat gtcgggtggc gcatcgatta tcagatggtt acgcccgaac ttgccgccaa
     5641 agccgtgtcc gcacacgttt ataaagatga aaaattttcc gaccatgcgc cgctggtcat
     5701 ggagtatgac tatgctgccg aataaagttt tgggtaaata tgattggaat gtggacggaa
     5761 aaacaggaat aggcgcagca tgggttgtcg ctgcgtttat cctgcccata ttggtgtggg
     5821 cgatatttat gttgtcgcgg atgcaaggct ggcttgcgcc gaccaaggca aacccgacat
     5881 gggcgttggt gtggctgctg atctgcatgc cctgcctgct gattgcgtcc aaatgtttgg
     5941 gttggaaagg ctggcggcgg gtggtgaata tttttgcctg cctgaccgtc tgcgccatat
     6001 tgagcgtacc cgcttcgctg ctcatcgcct ttaccctccg ggacctgctg aaataggcgg
     6061 ggcggtatgc agggttttga actcgaagat ttgacgcttt ggctgatacg cgatgccgga
     6121 gaggatcaga tgtggataga ccgttgggcg atcagttatc ccgtcgtgca gatgtccgaa
     6181 gcgtcggccg gtcaaagcat aggggaatgg caggcagggc ttcggacggc atttgaacgc
     6241 atacgtggca aatacgtcgc cgttgtcgca cacggtgcgg gcgcggccgc atttttggcg
     6301 tggctgtatc aggcagacat cctgacacgg aagaaaattg ccaacatcat ccttgtaccg
     6361 cagcgtcccg atatttttcc cgacgatgcg gaacacactt tccaacgcgt ccgctgtccc
     6421 tgccgtgccg cattggttgt acccgaacac ggcggcgtgc cgcacggttg ggcgcaaaaa
     6481 caggcggatt tgtggaacgc ccgcctgttg gtttccccgc attcgggcag tttgaacggc
     6541 atgctcggcg gctggcagtg gggtatgaag ctgatgcagg aaatgttgct ggcgtgaacg
     6601 cttgccttat cggaatttcg gttaactggg gttgcaagga aaatgccgtc tgaaacaggc
     6661 ttcagacggc atttccattc aaacagggct tacaggctgc ccaacacgat acgcaatacg
     6721 cggcgcagcg gctcggccgc gccccacaag agctggtcgc cgacggtgaa cgcgctgatg
     6781 tattcgccgc ccatacccag tttgcggatg cgtccgacgg ggacggacag cgtgccggta
     6841 actttggcgg gggtcagctc gcggatgctg gcttcttttt cgttggggat gactttcacc
     6901 cagtcgttcg cgcctgccaa aatcgcttcg atttcggaaa tgggcaggtc ttttttcaac
     6961 ttcagggtaa gggcttggct gtggcagcgc atagagccga tgcggacgca caggccgtca
     7021 atcacggttg gattgtcgct gcggccgagg attttgttgg tttccgcgcc gcctttccat
     7081 tcttctttag actggccgtt gcccaaatcc acgtcaatcc acggaatcag gctgccggcg
     7141 agcggtacgc cgaagttggc tttcggatag tcttcgctgc gcaggaaatc agatactttg
     7201 cggtcgatgt cgagaatcgc gctggaagga tcggcaagct cgtccgccac ttgggcgtga
     7261 accgcgccca taccgctgat gagttcgcgc atatttttcg cacctgcgcc ggaagcggct
     7321 tggtaggtca tgctggttgc ccattcaacc aaatcgtttt ggaacaggcc gcccaaagcc
     7381 atcagcatca gggagacggt gcagttgccg ccgatgtagt ttttcacgcc gtttttgagg
     7441 ccgttgtcga tgacattgcg gttgacgggg tcgaggacga taatcgcatc gtctttcata
     7501 cgcagtgagg acgccgcgtc aatccagtag ccgttccagc cgctgtcgcg cagggcttgg
     7561 aacacggatt tggtgtaatc gccgccttgg caggtaacga tgatgtccat ttttgccaat
     7621 tcggcaacat cgttggcatc caacaatgtt ttggctgcct gaccgaaatc aggggctgcg
     7681 ccgccgacgt tggaagtggt aaagaaaaac gcttcgggaa tatgggcgaa gtcgttttct
     7741 tcttgcatac gctgcatcaa aacagagccg accatgccgc gccagccgac gaaacctact
     7801 ttcattgtgt tgctccttga ggaaaaatcg ttaacaaaat tatgtatggc gtaaaggaag
     7861 cgttttaacg ccgtattggg aaaatgtaaa gttctttatc gggatttctt taagtattgg
     7921 cgttttcggt gtcgtggcgg tagaatcggg gtcagttaag aacaattatc aggaacggat
     7981 atggaagaaa aaaacgacta caccgacgcg gcatccgaca accgcaacgg gcaggaaatt
     8041 gaagtcggaa ttgccggcgc aggcgaccgg atacttgccg cgctgctgaa ccaattgttt
     8101 acctttttgg ttttgttggt gccgtttgcc ggactgattg ctttcgccat caagaatgaa
     8161 ggcaggattg gcggcagtga ggaaatattc gggctgcttt tgggcatgac ttccttttgg
     8221 gtaggactgg cgggcatttt ggtttatacc gtcgttcaaa tctactatat gagtcgggac
     8281 gggcagtcat tgggtaagaa aatcatgaga atccgcgtgt tgaaaaccga cggccgcaat
     8341 cccggttttg tcggcacggt tttggtacgc gaaatcgcat ggtcggtttt ggttgccatt
     8401 attgccgccg ttatcggtct tatagcaggt gacaacggag aaaacgccat caacctgctg
     8461 gcattccttg ccaactttgt cctgctcttt atggtcaaac gcgaccgccg cacgctttac
     8521 gacatactgg cggatacggt tgtcgtcaag ctgcccaaat aaacggacac ggcaaaatgc
     8581 cgtctgaaag cctttcagac ggcattttta tcttcagaac cgctcaagca tcgtgcagtg
     8641 aagccgcgtg cagggtgttt tccatcaatg tggcaatcgt catcggaccc acgccgccgg
     8701 gaacgggcgt aatcatcgcc gcccgttctt ttgccgtttc aaattccacg tcgccgcaca
     8761 ggctgccgtc gtccaaacgg ttgatgccca catcgataac gaccgcgccg ggtttgatcc
     8821 attcgccttt gacaaagttc ggaatgccca cgccgaccac caaaatatcg gctccggcaa
     8881 cctcgtctgc cagattttcg gttgcgctgt ggcagaccgt taccgttgcg cgcgccagca
     8941 gcaattccaa cgcctgcggg cggccgacga tattcgacgc gccgaccacg accgcttttt
     9001 tccccttcgg atcaatgccg taagcttcca aaagcgtcat cacgcccttg ggcgtacacg
     9061 ggcgcatcag cggcattttg accgccagcc tgccgacatt gtaaggatgg aagccgtcca
     9121 cgtccttatc cggcgaaata cgttccaaaa ccgcctggct gtcgaggtgc ttcggcagcg
     9181 gtagctgaac cagaataccg tccacttcgg aatcggcatt caggcggtcg accagtgcca
     9241 gcagttcttc ctgcgatgtt gattcgggca gctcgtaaga cagtgatttg atgccgcatt
     9301 tttggcaggc agttttcttg ttgcggacat aaaccgcgct ggcagggtcg ccaccgacca
     9361 aaaccacggc caggcaaggc gtgtgcagat tgtcctgttg gcgttgcgcc accgcttcgg
     9421 caaccgcctg caggcgtttt tgcgaaactt ctttaccatt gatcagttgt gccgacatat
     9481 ccgtcctttt gttaaacagg tagaaaatgc tgaaaattat cgcattttcc gtttgttttt
     9541 acagcaggat gccgaaaata aatttgccct gaaataaaat acggctgttt ggacggatta
     9601 aatatttttt caaatcaaaa aactatattt ttcatcttgg tgtcttgaaa ataaatattg
     9661 acgcatcttt ccctgagttg tatagttcgc ttcttcaagt cggggcgtag cgcagcccgg
     9721 ttagcgcatc tgctttggga gcagagggtc gtgagttcga atcccaccgc cccgaccaat
     9781 caatcagcac gaatcggcat gagcgcccgt agctcaaccg gatagagcac cgaccttcta
     9841 agtcgggggt tacaggttcg attcctgtcg ggcgtgccaa gaatttgatt gaaaaccgtt
     9901 tttatggtgg ctgtagctca gttggtagag ccccggattg tgattccggt tgtcgtgggt
     9961 tcgagcccca tcagccaccc cagataaagg cccgtacttt tcggtacggg tctttttccg
    10021 tttgcgcgta ctgtccgcgc cgccggcttt gcctttcgca tatgcttctg tatcatgtgg
    10081 gtttttctgt cttttatggt ttttgtcgga ggctttgatg gttgacgctt ggtctgtccc
    10141 tgattttgaa tcgaaaatct gtccgcccga ggcgttggcg gcgcgtttgg cgttgttgcc
    10201 gcgcccgctg gtgtttacca acggctgttt cgacatcctc cacagggggc acgttactta
    10261 tctggcgcag gcgcgttcga tgggggacgc gttggtgctg gcgttgaata ccgatgcttc
    10321 ggtgcggcgt ctgggcaagg gcggtgaccg cccggttaat cctttggaga accgtgccgc
    10381 cgttgccgcc gctttggaaa gtgtggattt ggtaacgtgg tttgacgggg atacgccggc
    10441 ggcgttgatt gaggcggtca aacctgagat tttggtcaag ggcggcgatt gggctgcgga
    10501 taagattgtc ggtgcggcag aaacgttggc gcgcggcggt caggtgtttt caattccgtt
    10561 tctgcaccag acttcgacaa cgaagacttt ggcaaaaatc cgtgcggcag agggcggaaa
    10621 atgacggttt tgaagccttc gcactggcgg gtgttggcgg agcttgccga cggtttgccg
    10681 caacacgtct cgcaactggc gcgtatggcg gatatgaagc cgcagcagct caacggtttt
    10741 tggcagcaga tgccggcgca catacgcggg ctgttgcgcc aacacgacgg ctattggcgg
    10801 ctggtgcgcc cattggcggt tttcgatgcc gaaggtttgc gcgagctggg ggaaaggtcg
    10861 ggttttcaga cggcattgaa gcacgagtgc gcgtccagca acgacgagat actggaattg
    10921 gcgcggattg cgccggacaa ggcgcacaaa accatatgtg tgacccacct gcaaagtaag
    10981 ggcagggggc ggcaggggcg gaagtggtcg caccgtttgg gcgagtgtct gatgttcagt
    11041 tttggctggg tgtttgaccg gccgcagtat gagttgggtt cgctgtcgcc tgttgcggca
    11101 gtggcgtgtc ggcgcgcctt gtcgcgttta ggtttggatg tgcagattaa gtggcccaat
    11161 gatttggttg tcggacgcga caaattgggc ggcattctga ttgaaacggt caggacgggc
    11221 ggcaaaacgg ttgccgtggt cggtatcggc atcaattttg tcctgcccaa ggaagtagaa
    11281 aatgccgctt ccgtgcaatc gctgtttcag acggcatcgc ggcggggcaa tgccgatgcc
    11341 gccgtgctgc tggaaacgct gttggtggaa ctggacgcgg tgttgttgca atatgcgcgg
    11401 gacggatttg cgccttttgt ggcggaatat caggctgcca accgcgacca cggcaaggcg
    11461 gtattgctgt tgcgcgacgg cgaaaccgtg ttcgaaggca cggttaaagg cgtggacgga
    11521 caaggcgttc tgcacttgga aacggcagag ggcaaacaga cggtcgtcag cggcgaaatc
    11581 agcctgcggt ccgacgacag gccggtttcc gtgccgaagc ggcgggattc ggaacgtttt
    11641 ctgctgttgg acggcggcaa cagccggctc aagtgggcgt gggtggaaaa cggcacgttc
    11701 gcaaccgtcg gtagcgcgcc gtaccgcgat ttgtcgcctt tgggcgcgga gtgggcggaa
    11761 aaggcggatg gaaatgtccg catcgtcggt tgcgctgtgt gcggagaatt caaaaaggca
    11821 caagtgcagg aacagctcgc ccgaaaaatc gagtggctgc cgtcttccgc acaggctttg
    11881 ggcatacgca accactaccg ccaccccgaa gaacacggtt ccgaccgctg gttcaacgcc
    11941 ttgggcagcc gccgcttcag ccgcaacgcc tgcgtcgtcg tcagttgcgg cacggcggta
    12001 acggttgacg cgctcaccga tgacggacat tatctcgggg gaaccatcat gcccggtttc
    12061 cacctgatga aagaatcgct cgccgtccga accgccaacc tcaaccggca cgccggtaag
    12121 cgttatcctt tcccgaccac aacgggcaat gccgtcgcca gcggcatgat ggatgcggtt
    12181 tgcggctcgg ttatgatgat gcacgggcgt ttgaaagaaa aaaccggggc gggcaagcct
    12241 gtcgatgtca tcattaccgg cggcggcgcg gcaaaagttg ccgaagccct gccgcctgca
    12301 tttttggcgg aaaataccgt gcgcgtggcg gacaacctcg tcattcacgg gctgctgaac
    12361 ctgattgccg ccgaaggcgg ggaatcggaa catacttaaa aaatacaccc tttttcaaca
    12421 cggggcggta tccgtccgaa tccgtccgga ttctgccgcc cgacagactg ccgcccaggc
    12481 gggcggggtt tcaaacattg aggaaattct aatgaaatgg ctcttcaccc ttttggcggt
    12541 actcaatatt gccgtattcg gcggcacggt gggctataaa ttggccgtta aagcgacggg
    12601 cggcgtgccg gaaaaccggg ccgtcgaaaa cacgcccccc gcaacgcccg ccgccgacaa
    12661 tgcggcggca tccgtggagg atacggcggc actgctcaaa ccgggcgaca tcctgaccga
    12721 agagcaggcg gagcagttgc gcttgaagaa agaagcggaa cagaaaaaac tgagggagaa
    12781 aaaacagcgt gaagaaaaag cccgccgcga aaaactcgcc gccgaaaagg cgcaggcgga
    12841 acgcgaaaac ggcgcggcgg atgccttatg cgccgcgcag gcaagcctca cgatggacga
    12901 agatgactac caccgcatca aaggactttt gggcaaatgg tcgcacgttg ccagcaggag
    12961 cgtcgaaaaa cgcaccgcca aagccaaacc tgccgacaaa acctaccgcg tcgtcctgcc
    13021 cgtttccgcc gatgccgaaa atcaggcggc ggagctgtct gccaaaggtt tcaaccccat
    13081 accgtttgac ggcgcattga gtttgggtgt cggcaacagc cgggaaaacg cccaagccct
    13141 gcaaaaccgg cttgccggcg ccggattcgg cggggcgcat attgtcgaac actttgccga
    13201 agccgacagg caggacgatt ctttgagcgt gtcgcgtatg acggttttgt ttaccggcgt
    13261 gaatgccgcc gatgcggacg aaatccgtaa aatcacgtcc ctatacggca aactgaacct
    13321 caagtcttgc aaataggcgc gaaagccgga cgataaacgc caaacccacc gcgaaggtgg
    13381 gtttggcgtt tcggttttga gtatctgata tataaaaagg gaatgtatgt ctcgtatatg
    13441 ccgactccaa gtgtgaaagt gatgatgggg aaatatggtg tttaatggtt cggaacggac
    13501 ggcttccgag tggttttgat tatacgctaa taataataat tatcaataaa aatttaaaaa
    13561 taaatgcaga ttttttgtaa tacgatgaaa aataaacaaa ttaacctgtc cgccgatgtt
    13621 tgtgattcgg gtcggcaaac tttcattgtg tcggacaaat cggggtcggc agtcatagct
    13681 gagggcttcg tgcctgacgg aaataaggtt gcccgtgttt gaacatccgt ccgattgggc
    13741 gcggacaggg ttgtcattcg ggggtgtttg agcgtggatt cggggatgcg aaagcggtaa
    13801 aaccgttgcg gatgaaggct tacggacggc tttaggtatt tttaagtgta ttcaaacaac
    13861 aacaaaacgc ttcttctatt gccgtattta gggcttgcgc ggcagcctgc acaccgtgga
    13921 ggccgagtgt ttcgttggtt gcggcatcgg gacgggcggc aaggttttcc ggccggtttt
    13981 tccatttttt ccgacaaagc cgtgatgccg gggaatggcg gtttgtccgt ttcggaccgc
    14041 cgccgttttg agccgcgatg ccgtctgaac cgttcagacg gcatttttgc cgcctttttc
    14101 aatattccgc cgaatgccaa aacggctgtc cgactgtcgg cgtgctggct tgcgctttgt
    14161 cgcgtgcttc gaccggttcg gcttcaaatg ccagccgtcc ggattcgacg gcgagtgcga
    14221 aggcgcgtgc catattgacc ggatcgccgc tgcgggaaac ggcagtattc aaaagcacgc
    14281 cgtcaaaacc ccattccatc acttgtgccg cctgtgaggg caaacccaag cccgcgtcga
    14341 taatcagcgg cgtgtcgggc aggcgttcgc gcaggacgtt caacgcgtag gcgtgaaccg
    14401 cgcccaaacc cgtgccgatc ggagccgccc acggcattaa cgcctgacag cccgcgtcga
    14461 gcaggcggcg gcaggcaatc aggtcttcgg tgcaataagg cagcactttg aagccgtctt
    14521 taatcaggat ttccgccgct tcgacaagtt ggaacacatc cggctgcaag gtgtcgtcat
    14581 ctccgatgag ttccaatttt atccaatcgg tttcaaacac ttcgcgcgcc atttgcgccg
    14641 tcgttaccgc ttcctgcacg ctttggcagc ctgccgtgtt cggcaggacg ggaacgccgg
    14701 tttcttgaag cagcgaccaa aacccctgac cgtgcgcctc gccgccgctt cccgcgcggc
    14761 gcagcgagac ggtaatcatc gcaggctggg cggtttggat ggattgtttg aggatttcgg
    14821 gggtcgggta ggcggctgtg ccgagcagca gccgcgaagg gaaagtttcg ctgtacaggg
    14881 tgagcataat gggttccttt gtatagtgga ttaacaaaaa ccagtacggc gttgcctcgt
    14941 cttagctcaa agaaaacgat tctctaaggt gctgaagcac taagtgaatc ggttccgtac
    15001 tatttgtact gtctgcggct tcgtcgcctt gtcctgattt aaagttaatc caccataacg
    15061 ttgttttggg gacaggggtc gtctgaaaag gcaaaaccgc ctagccgccg accaccggcc
    15121 gcacgatatc gattttgtcg ttttcgttta aaaccgtttc cgcatacgcg cctttgggga
    15181 cgaaaacggt gttgaccgcc acggcaaagg gcttttgcgg cgcggtttgg gcgatgaggt
    15241 cggcaacgct tgtgccgtga agttcggcgg gtccgccgtt taagatgatg ttcatggttt
    15301 ctcgatgttt ct
//
LOCUS       DAWGNT010000032        15147 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.032, whole genome shotgun sequence.
ACCESSION   DAWGNT010000032 DAWGNT010000000
VERSION     DAWGNT010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 15147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15147
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.032"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..167)
                     /locus_tag="WHR98_000738"
     CDS             complement(<1..167)
                     /locus_tag="WHR98_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HEZ2307442.1"
                     /translation="MSTFFRQTAQAMIAKHINRFPLLKLDQVIDWQPIEQYLNRQRTR
                     YLRDHRGRPAYP"
     gene            340..1749
                     /locus_tag="WHR98_000739"
     CDS             340..1749
                     /locus_tag="WHR98_000739"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEZ2307443.1"
                     /translation="MMKNRVTNIHFVGIGGVGMSGIAEVLHNLGFKVSGSDQARNAAT
                     EHLGSLGIQVYPGHTAEHVNGADVVVTSTAVKKENPEVVAALEQQIPVIPRALMLAEL
                     MRFRDGIAIAGTHGKTTTTSLTASILGAAGLDPTFVIGGKLNAAGTNARLGKGEYIVA
                     EADESDASFLHLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCI
                     DSEHVRAILPKVSKPYATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVV
                     LNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTAL
                     LVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNTVDALV
                     LTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNM
                     GAGSINRVPAALLELSKQI"
     gene            1862..2776
                     /locus_tag="WHR98_000740"
     CDS             1862..2776
                     /locus_tag="WHR98_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEZ2307444.1"
                     /translation="MQNFGKVAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDP
                     KETPLSELKAQGFQTAFNILHGTYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRC
                     KLIWQALGLPVPEFAVLHDDTDFDAVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKS
                     VYEELKHLQGEIIAERFIGGGEYSCPVLNGKGLPGIHIIPATEFYDYEAKYNRDDTIY
                     QCPSEDLTEAEESLMRELAVRGAQAIGAEGCVRVDFLKDTDGKLYLLEINTLPGMTSH
                     SLVPKSAAVTGVGFADLCIEILKTAHVG"
     gene            2766..3494
                     /locus_tag="WHR98_000741"
     CDS             2766..3494
                     /locus_tag="WHR98_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HEZ2307445.1"
                     /translation="MWDNAEAMERLTRWLLVMMAMLLAASGLVWFYNSNHLPVKQVSL
                     KGNLVYSDKKALGSLAKEYIHGNILRTDINGAQEAYRRYPWIASVMVRRRFPDTVEVV
                     LTERKPVARWGDHALVDGEGNVFEARLDRPGMPVFRGAEGTSAEMLRRYDEFSTVLAK
                     QGLGIKEMTYTARSAWIVVLDNGITVRLGRENEMKRLRLFTEAWQHLLRKNKNRLSYV
                     DMRYKDGFSVRYASDGLPEKESEE"
     gene            3580..4824
                     /gene="ftsA"
                     /locus_tag="WHR98_000742"
     CDS             3580..4824
                     /gene="ftsA"
                     /locus_tag="WHR98_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEZ2307446.1"
                     /translation="MEQQQRYISVLDIGTSKVLALIGEVQDDDKINIVGLGQAPSLGL
                     RAGMVTNIDATVQAIRQAVNDAELMADTKITHVTTGIAGNHIRSLNSQGVVKIKDGEV
                     TQADIDRAIETAKAINIPPDQKILDAVVQDYIIDTQLGVREPIGMSGVRLDTRVHIIT
                     GASTAVQNVQKCIERCGLKSDQIMLQPLASGQAVLTEDEKDLGVCVIDIGGGTTDIAV
                     YMNGAIRHTSVIPAGGNLITKDLSKSLRTPLDAAEYIKIHYGVASCDTEGLGEMIEVP
                     GVGDRTSRQVSSKVLAAIISARIQEIFGVVLGELQKSGFPKEVLNAGIVLTGGVSMMT
                     GIVEFAEKIFDLPVRTGAPQEMGGLSDRVRTPRFSTAIGLLHAACKLEGNLPQPENGA
                     VQEREGGGGLLARLKRWIENSF"
     gene            4943..6121
                     /gene="ftsZ"
                     /locus_tag="WHR98_000743"
     CDS             4943..6121
                     /gene="ftsZ"
                     /locus_tag="WHR98_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEZ2307447.1"
                     /translation="MEFVYDVAESAVSPAVIKVIGLGGGGCNAINNMVANNVRGVEFI
                     SANTDAQSLAKNHAAKRIQLGTNLTRGLGAGANPDIGRAAAQEDREAIEEAIRGANML
                     FITTGMGGGTGTGSAPVVAEIAKSLGILTVAVVTRPFAYEGKRVHVAQAGLEQLKEHV
                     DSLIIIPNDKLMTALGEDVTMREAFRAADNVLRDAVAGISEVVTCPSEIINLDFADVK
                     TVMSNRGIAMMGSGYAQGIDRARMATDQAISSPLLDDVTLDGARGVLVNITTAPGCLK
                     MSELSEVMKIVNQSAHPDLECKFGAAEDETMSEDAIRITIIATGLKEKGAVDFVPARE
                     VEAVAPSKQEQSHNVEGMIRTNRGIRTMNLTAADFDNQSVLDDFEIPAILRRQHNSDK
                     "
     gene            6260..7570
                     /locus_tag="WHR98_000744"
     CDS             6260..7570
                     /locus_tag="WHR98_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEZ2307448.1"
                     /translation="MDTSKQTLLDGIFKLKANGTTVRTELMAGLTTFLTMCYIVIVNP
                     LILGETGMDMGAVFVATCIASAIGCFVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGV
                     PWQVALGAVFISGLIFILFSFFKVREMLVNALPMGLKMSIAAGIGLFLALISLKGAGI
                     IVANPATLVGLGDIHQPSALLALFGFAMVVVLGHFRVQGAIIITILTITVIASLMGLN
                     EFHGIIGEVPSIAPTFMQMDFEGLFTVSMVSVIFVFFLVDLFDSTGTLVGISHRAGLL
                     VDGKLPRLKRALLADSTAIVAGAALGTSSTTPYVESAAGVSAGGRTGLTAVTVGVLML
                     ACLMFSPLAKSVPAFATAPALLYVGTQMLRSARDIDWDDMTEAAPAFLTIVFMPFTYS
                     IADGIAFGFISYAVVKLLCRRTKDVPPMVWIVAVLWALKFWYLG"
     gene            8196..9071
                     /gene="prpB"
                     /locus_tag="WHR98_000745"
     CDS             8196..9071
                     /gene="prpB"
                     /locus_tag="WHR98_000745"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HEZ2307449.1"
                     /translation="MSQHSAGARFRQAVKESNPLAVAGCVNAYFARLATQSGFKAIYL
                     SGGGVAACSCGIPDLGITTMEDVLIDARRITDNVDTPLLVDIDVGWGGAFNIARTIRN
                     FERAGVAAVHIEDQVAQKRCGHRPNKAIVSKDEMVDRIKAAVDARVDENFVIMARTDA
                     LAVEGLDAAIERAQACVEAGADMIFPEAMTDLNMYRQFADAVKVPVLANITEFGSTPL
                     YTQSELAENGVSLVLYPLSSFRAASKAALNVYEAIMRDGTQAAVVDSMQTRAELYEHL
                     NYHAFEQKLDKLFQK"
     gene            9157..10311
                     /gene="prpC"
                     /locus_tag="WHR98_000746"
     CDS             9157..10311
                     /gene="prpC"
                     /locus_tag="WHR98_000746"
                     /EC_number="2.3.3.16"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HEZ2307450.1"
                     /translation="MTETTQTPTFKPKKSVALSGVAAGNTELCTVGRTGNDLSYRGYD
                     ILDLAQKCEFEEVAHLLIHGHLPNKFELAAYKTKLKSMRGLPIRVIKVLESLPAHTHP
                     MDVMRTGVSMLGCVHPERESHPESEARDIADKLIASLGSILLYWYQYSHNGKRIEVES
                     DEETIGGHFLQLLHGKRPSESHIKAMHVSLILYAEHEFNASTFTARVIAGTGSDMYSS
                     ITGAIGALKGPKHGGANEVAYDIQKRYRNADEAEADIRERIGRKEIVIGFGHPVYTIS
                     DPRNVVIKEVARGLSKETGDMRLFDIAERLESVMWEEKKMFPNLDWFSAVSYQKLGVP
                     TAMFTPLFVISRTTGWSAHVLEQRKDGKIIRPSANYTGPEDLAFVEIEER"
     gene            10404..11126
                     /locus_tag="WHR98_000747"
     CDS             10404..11126
                     /locus_tag="WHR98_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEZ2307451.1"
                     /translation="MDKDKGSYAGIPVQNTKELVWQKIQDIPISECGEPLVSVGNTGR
                     IRVNPVYFSQGIEGAINSVLLRRSVADRLTQVVSLLPEVYGLEIFDGWRPVIVQRALR
                     ENMKQEIEKRHPEYDEVQVREALDCFAADPDRAGMPLPHLTGGSVDVGLFDIKSGKSL
                     DMGSEFDATGHLSYSDALEKEGEYFSSARNLRRILIHAMKEAGFSNLPTEWWHFDYGN
                     QNWAYFTQQSNAVFGAVEEQDT"
     gene            11152..12357
                     /locus_tag="WHR98_000748"
     CDS             11152..12357
                     /locus_tag="WHR98_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF819 domain-containing protein"
                     /protein_id="HEZ2307452.1"
                     /translation="MQTLISADNHLLLWAFVMLAAAAAIFIEQNSRLAGKVPGAVLAL
                     LIALIASNLGVIPTDAPVFDAVWSYIVPLAIPLLLFQLDLHALFKESGRMLFIFLISS
                     LGTVIGTLVSFALLKNYIPELDKVAGMISASYTGGGVNFAAMSAKLNPAKDVIAATIV
                     ADNLMMACYFFILIGISSSYWVRKVWGSPYQDKLEQEYHDPSVNKAAEYWKPKSISLQ
                     SIALSLAASILLVAVSFSLSSFLQNHFQSVDGVALKMLTGLISDKYLLLTTFTLAVVL
                     FFRKGIQKLDGSQELGTYCIYLFFVVIGVPASIPLIIKTAPLLFVFTLIIAVLNLLLT
                     LVLGKLFKFSIEEIVLACNANIGGPTTAAALAISKGWRDLVGAILLIGTVGYIIGNYI
                     GSFVYALLS"
     gene            12461..15067
                     /gene="acnD"
                     /locus_tag="WHR98_000749"
     CDS             12461..15067
                     /gene="acnD"
                     /locus_tag="WHR98_000749"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe/S-dependent 2-methylisocitrate dehydratase
                     AcnD"
                     /protein_id="HEZ2307453.1"
                     /translation="MAANQRYRKPLPGTDLEYYDARAACEDIKPGSYDKLPYTSRILA
                     ENLVNRADKVDLPTLQSWLGQLIEGKQEIDFPWYPARVVCHDILGQTALVDLAGLRDA
                     IAEKGGDPAKVNPVVQTQLIVDHSLAVECGGYDPDAFRKNREIEDRRNEDRFHFINWT
                     KTAFENVDVIPAGNGIMHQINLEKMSPVVQVKNGVAFPDTCVGTDSHTPHVDALGVIS
                     VGVGGLEAETVMLGRASMMRLPDIVGVELNGKRQAGITATDIVLALTEFLRKERVVGA
                     FVEFFGEGARSLSIGDRATISNMTPEFGATAAMFAIDEQTIDYLKLTGRDDAQVKLVE
                     TYAKTAGLWADALKTAVYPRVLKFDLSSVTRNMAGPSNPHARFATADLASKGLAKPYE
                     EPSDGQMPDGAVIIAAITSCTNTSNPRNVVAAALLARNANCFGLKRKPWVKTSFAPGS
                     KVAEIYLKEAGLLPEMEKLGFGIVAFACTTCNGMSGALDPKIQKEIIDRDLYATAVLS
                     GNRNFDGRVHPYAKQAFLASPPLVVAYALAGSIRFDIENDVLGVADGKEIRLKDIWPA
                     DEEIDAVVAEYVKPQQFRDVYVPMFDTGTAQKAPSPLYDWRPMSTYIRRPPYWEGALA
                     GERTLRGMRPLAILPDNITTDHLSPSNAILAVSAAGEYLAKMGLPEEDFNSYATHRGD
                     HLTAQRATFANPKLFNEMVKNEDGSVRQGSFARVEPEGETMRMWEAIETYMNRKQPLI
                     IIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLQFKPDTNRH
                     TLQLDGTETYDVVGERTPRCDLTLVIHRKNGETVEVPVTCRLDTAEEVLVYEAGGVLQ
                     RFAQDFLEGNAA"
BASE COUNT         3726 a         3637 c         4018 g         3766 t
ORIGIN      
        1 ggataggcgg gacggccgcg gtggtctcta aggtaacggg ttctttgacg gttcaggtat
       61 tgttcgatcg gctgccaatc aatcacttgg tccaacttca atagcgggaa acggttgatg
      121 tgtttggcaa tcatggcttg cgcggtttgc cggaagaagg tgctcatgga aaatccccta
      181 aatgtcttgg tgggaattta ggggattttg ggggattttg caaaggtctc atcctgtatg
      241 ccgaaacatc tgtaatttac aagaaaacta tggcgtagaa gcggatagcc ctttaaaata
      301 acgcctttac gcatcgaaaa tccaccggaa cgcaacatta tgatgaaaaa tcgagttacc
      361 aacatccatt ttgtcggtat cggcggcgtc ggcatgagcg gtatcgccga agtcttgcac
      421 aatttgggtt ttaaagtttc cggttcggat caggcgcgaa atgccgctac cgagcatttg
      481 ggcagcctgg gcattcaagt ttatcccggc cataccgcag aacacgttaa cggtgcggat
      541 gtcgtcgtta cctctaccgc cgtcaaaaaa gaaaatcccg aagttgtcgc tgcgttggag
      601 cagcaaattc ccgttattcc gcgcgccctg atgttggcgg agttgatgcg cttccgtgac
      661 ggcatcgcca ttgccggcac gcacggcaaa accacgacca ccagcctgac cgcctccatc
      721 ctcggcgcgg caggacttga cccgactttc gttatcggcg gcaaactcaa cgccgcaggt
      781 accaacgccc gtttgggcaa aggcgaatac attgtcgccg aagccgacga atccgatgcc
      841 tctttcctac atctaacccc gattatgtct gtcgtcacca atatcgacga agaccacatg
      901 gatacctacg gacacagcgt tgaaaaactg catcaggcgt ttgttgattt tatccaccgt
      961 atgccgttct acggcaaagc gtttttgtgt atcgacagcg aacacgtccg cgcgattttg
     1021 cccaaagtga gcaaacctta tgctacttac ggtttggacg ataccgccga catctacgcc
     1081 accgacatcg aaaacgtcgg cgcgcaaatg aaattcaccg tccatgttca aatgaaagga
     1141 catgagcagg ggtcgtttga agtcgtgctg aatatgcccg gcagacacaa cgtgctgaac
     1201 gcattggcag ccatcggcgt ggcgctggaa gtcggcgcat cggttgaagc gatccaaaaa
     1261 ggcttgctcg gctttgaagg cgtcggccgc cgcttccaaa aatacggcga catcaagttg
     1321 ccaaacggcg ggaccgcgct cttggtggac gactacggac accaccccgt cgaaatggcg
     1381 gcgacccttg ccgccgcacg cggcgcgtat ccggaaaaac gtttggtact cgccttccag
     1441 ccgcaccgct atacccgcac gcgcgatttg tttgaagact ttaccaaagt cctcaatacc
     1501 gttgacgcgc tggtgctgac cgaagtttat gccgccggtg aagagccgat tgccgccgcc
     1561 gattcccgcg ctcttgcccg cgccatccgc gtgttgggca aactcgagcc gatttactgc
     1621 gaaaacgttg ccgatctgcc cgaaatgctg ttgaacgttt tgcaggacgg cgacatcgtg
     1681 ttgaatatgg gcgcgggaag catcaaccgc gtccccgccg cgctgctgga attgtcgaaa
     1741 cagatttgag gcacacccgc ctgacagacg gaacatcata taaaggtcgt ctgaaaccgc
     1801 aaatcaggtt tcagacgacc tctggcaaca agcataaagc aatcaggaaa gaacaaaaac
     1861 aatgcagaat tttggcaaag tggccgtatt gatgggcggt ttttccagcg aacgagaaat
     1921 ctcgctggac agcggcaccg ccattttgaa tgctttaaaa agcaaaggca tagacgcata
     1981 cgccttcgat cctaaagaaa ccccattgtc tgaattgaag gcacaaggtt ttcagacggc
     2041 attcaacatc cttcacggta cttacggcga agacggggcg gttcagggtg cattggaact
     2101 gttgggcatt ccctataccg gcagcggtgt cgccgcatcc gccatcggca tggacaaata
     2161 ccgctgcaaa ctgatttggc aggcattggg attgcccgtt cccgagttcg ccgtcctgca
     2221 cgacgacact gatttcgatg ccgtcgaaga aaaattgggc ctgccgatgt ttgtgaaacc
     2281 ggcggccgaa ggcagcagcg taggcgtggt aaaagtcaaa ggaaaaggcc gtctgaaaag
     2341 cgtttacgaa gaattgaaac accttcaggg cgaaatcatt gccgaacgtt ttatcggcgg
     2401 cggcgaatat tcctgccccg tcctgaacgg caaagggctg cccggcatac acatcattcc
     2461 cgcaaccgag ttttacgact acgaagccaa gtacaaccgc gacgacacca tttatcaatg
     2521 tccttcggaa gatttgaccg aagccgaaga aagcctgatg cgcgaactgg cggttcgcgg
     2581 cgcgcaggca atcggtgcgg aaggctgcgt gcgcgtcgat ttcctcaaag ataccgacgg
     2641 caaactctat ctgttggaaa tcaacaccct gcccggtatg acgagccata gtttagtacc
     2701 gaaatccgct gccgttacgg gcgtgggttt tgccgattta tgtattgaaa ttttgaagac
     2761 cgcacatgtg ggataatgcc gaagcgatgg aacggctgac gcgctggctg cttgtcatga
     2821 tggcgatgct gcttgctgcg tccgggctgg tttggtttta caattcgaat catctgcccg
     2881 tcaagcaggt gtcgctgaag ggcaacctgg tttattccga taagaaggca ttgggcagtt
     2941 tggcgaaaga atacatccat gggaatattt tgaggacgga catcaatggc gcacaggagg
     3001 cctaccgccg gtatccgtgg attgcgtcgg tcatggtgcg ccgccgtttt cccgacacgg
     3061 ttgaggtcgt cctgaccgag cgcaagccgg tcgcgcgttg gggcgaccat gccttggtgg
     3121 acggcgaagg caatgttttt gaagcccgct tggacagacc cggaatgccg gtattcagag
     3181 gcgcggaagg aacgtctgcc gaaatgctcc gccgttatga cgaattttcg actgttttgg
     3241 caaaacaggg tttgggcatc aaagagatga cctatacggc acgttcggcg tggattgtcg
     3301 ttttggacaa cggcatcacc gtcaggctcg gacgggaaaa cgagatgaaa cgcctccggc
     3361 tttttaccga agcgtggcag catctgttgc gtaaaaataa aaatcggtta tcctatgtgg
     3421 atatgaggta taaggacgga ttttcagtcc gctatgcttc cgacggttta cccgaaaaag
     3481 aatccgaaga atagtgggaa caggtatcgg acagattacg accgtgccgt ctgaaacggt
     3541 gcgacgcaaa tttcaatcag ttttaagagc agacgaacaa tggaacagca gcaaagatac
     3601 atcagcgtac tggatatcgg tacgtctaaa gtcctcgcac tgatcgggga agttcaagat
     3661 gacgacaaaa tcaacatcgt cggtttgggg caggctcctt cactgggctt gcgcgcgggc
     3721 atggtaacca atatcgatgc caccgtccaa gccatcaggc aggcggtcaa tgatgccgag
     3781 ctgatggcgg ataccaaaat tactcacgtt accacaggta tcgcaggcaa ccacatccgc
     3841 agtctcaatt cgcaaggtgt ggttaaaatt aaagatgggg aagtcacgca ggcagacatc
     3901 gatcgcgcca ttgaaacggc aaaggcaatc aatatcccgc ccgatcaaaa aattctcgat
     3961 gccgtggttc aagactacat tattgacacc caacttggcg tgagggagcc catcggtatg
     4021 agcggtgtgc gtctggatac gcgggtgcac atcattaccg gtgcaagtac ggcagtgcag
     4081 aatgtccaaa aatgtatcga gcggtgcggt ttgaaaagcg atcagatcat gcttcagccg
     4141 ttggcaagcg ggcaggcggt gctgactgaa gatgaaaaag acctcggcgt atgcgtcatc
     4201 gacattggtg gcggaacgac cgatattgcc gtttatatga acggtgccat ccgccatacg
     4261 tccgtcattc cggccggtgg taatctgatt accaaagatt tgtccaaatc gttgagaaca
     4321 cctctcgatg ccgccgagta cattaaaatc cattatggcg tggcatcatg cgatacggaa
     4381 ggcttgggtg agatgattga agttccgggc gtgggtgacc ggacatcgcg tcaggtttcc
     4441 agtaaggttc tggcagcaat catcagtgca cggattcagg agatttttgg cgtagtgctg
     4501 ggcgagctgc aaaaatcggg tttccccaaa gaagtgctga atgcgggtat cgttctgacc
     4561 ggcggtgtgt ccatgatgac cgggattgtg gaatttgccg aaaaaatctt cgatttgcct
     4621 gtacgcaccg gtgcacccca agaaatgggc ggtttgtccg accgcgtccg cacaccgcgt
     4681 ttttctaccg ctatcgggct gcttcatgca gcatgcaagc tggaaggaaa cttgccgcag
     4741 ccggaaaacg gtgcagtgca agagagggaa gggggcggcg gtttgttggc aagattgaaa
     4801 cggtggattg aaaacagctt ctgaacaggt ggattgccgt ttgacaggtg agaagtattt
     4861 tgccagcagc aagatacttc ttatataatg aataataatt tatttaaacc gtcctctgaa
     4921 tggggcgagc aggagttttt gaatggaatt tgtttacgac gtggcagaat cggcagtcag
     4981 ccctgcggtg attaaagtaa tcggcttggg cggcggcggt tgcaatgcaa tcaataacat
     5041 ggttgccaac aatgtgcgcg gtgtggagtt tatcagtgcc aatacggatg cgcagtctct
     5101 ggcaaaaaac catgcggcga agagaatcca gttgggtacg aatctgacac gcggtttggg
     5161 cgcgggcgcg aatcccgata tcggccgtgc ggcagcccag gaagaccggg aagccattga
     5221 agaagccatt cgcggtgcga atatgctgtt tatcacgacc ggtatgggcg gcggtaccgg
     5281 taccggttcc gcgccggttg ttgctgagat tgccaagtct ttgggcattc tgaccgttgc
     5341 cgtggttacc cgaccgttcg catatgaagg taagcgcgtc catgtcgcac aggcagggtt
     5401 ggaacagttg aaagaacacg tcgattcgct gattatcatc ccgaacgaca aactgatgac
     5461 tgcattgggt gaagacgtaa cgatgcgcga agccttccgt gccgccgaca atgtattgcg
     5521 cgatgcggtc gcaggcattt ccgaagtggt aacttgcccg agcgaaatca tcaacctcga
     5581 ctttgccgac gtgaaaaccg tgatgagcaa ccgcggtatc gctatgatgg gttcgggtta
     5641 tgcccaaggt atcgaccgtg cgcgtatggc gaccgaccag gccatttcca gtccgctgct
     5701 ggacgatgta accttggacg gagcgcgcgg tgtgctggtc aatattacga ctgctccggg
     5761 ttgcttgaaa atgtccgagt tgtccgaagt catgaaaatc gtcaaccaaa gcgcgcatcc
     5821 cgatttggaa tgcaaattcg gtgcggctga agacgagacc atgagcgaag atgccatccg
     5881 gattaccatt atcgctaccg gtctgaaaga aaaaggcgcg gtcgattttg ttccggcaag
     5941 ggaggtagaa gcggttgctc cgtccaaaca ggagcaaagc cacaatgtcg aaggtatgat
     6001 ccgcaccaat cgcggtatcc gcacgatgaa ccttaccgct gcggatttcg acaatcagtc
     6061 cgtacttgac gactttgaaa tccctgcgat tttgcgtcgt caacacaatt cagacaaata
     6121 atgtgctgtt tgcccgtaaa cctgctgcct cccgaatcgg tttgtccggt ttgggaggta
     6181 tgtttttcaa gatgttgcaa tttcgtacgg tttgcggtcg gcggattcag atttttccac
     6241 ttgatacaga ctttcagata tggacacttc aaaacaaaca ctgttggacg ggatttttaa
     6301 gctgaaggca aacggtacga cggtgcgtac cgagttgatg gcgggtttga caactttttt
     6361 gacgatgtgc tacatcgtta tcgtcaaccc tctgattttg ggcgagaccg gcatggatat
     6421 gggggcggta ttcgtcgcta cctgtatcgc gtctgccatc ggctgttttg ttatgggttt
     6481 tgtcggcaac tatccgattg cactcgcacc ggggatgggg ctgaatgcct atttcacctt
     6541 tgccgtcgtt aagggtatgg gcgtgccttg gcaggttgcg ttgggtgcgg tgttcatctc
     6601 cggtctgatt tttatcctgt tcagcttttt taaagtcagg gaaatgctgg tcaacgcact
     6661 gcctatgggt ttgaaaatgt cgattgctgc cggtatcggt ttgtttttgg cactgatttc
     6721 cctgaaaggc gcaggcatta tcgttgccaa tccggcaacc ttggtcggtt tgggcgatat
     6781 tcatcagccg tccgcgttgt tggcattgtt cggttttgct atggtggtcg tattgggaca
     6841 tttccgcgtt caaggcgcaa tcatcatcac catcttgacc attaccgtca ttgccagcct
     6901 gatgggtttg aatgaatttc acggcatcat cggcgaagta ccgagcattg cgccgacttt
     6961 tatgcagatg gattttgaag gcctgtttac cgtcagcatg gtcagtgtga ttttcgtctt
     7021 cttcttggtc gatctatttg acagtaccgg aacgctggtc ggcatatccc accgtgccgg
     7081 gctgctggtg gacggtaagc tgccccgcct gaaacgcgca ctgcttgcag actctaccgc
     7141 cattgtggca ggtgcggctt tgggtacttc ttccaccacg ccttatgtgg aaagcgcggc
     7201 gggcgtatcg gcaggcggac ggaccggcct gacggcggtt accgtcggcg tattgatgct
     7261 cgcctgcctg atgttttcac ctttggcgaa aagtgttccc gcttttgcca ccgcgcccgc
     7321 cctgctttat gtcggcacgc agatgctccg cagtgcgagg gatattgatt gggacgatat
     7381 gacggaagcc gcacctgcgt tcctgaccat tgttttcatg ccgtttactt attcgattgc
     7441 agacggcatc gctttcggct tcatcagtta tgccgtggtt aaacttttat gccgccgcac
     7501 caaagacgtt ccgcctatgg tatggattgt tgccgtattg tgggcactga aattctggta
     7561 tttgggctga ttgattcgat attaaaaatg ccgtctgaaa ggttttcaga cggcattttg
     7621 tttgccgata tatttaattt ttattaaatt atataaaaat caaatacata ataaaataca
     7681 tcggattgct taaaaataat acattgtttt tatgtataaa atattttata agttttcagg
     7741 attttgatta tcaaaaattt ttcttgattt cctgacaatt ttattgaaac aaataattca
     7801 aaattaatct agtttaatca tggaattaaa ataaaatatt aaaattatgt aatgagtctc
     7861 cttaaaaatg tttgacattt tcagtcttgt gttttagatt atcgaaaaat aaaactacat
     7921 aacactacaa aggaacatta ctatgaaacc aattcagatg ttttcccctt ttctgaataa
     7981 tccccttgtt ttcttcttgt ctgcggtttt gccgcataat tccgaacggt ctgctgtttt
     8041 tctttgattc gttttaaata tcaataagat aatttttccc atatattttt aatgattgga
     8101 ttgggatgcc cgacgcgtcg gatggctgtg ttttgccgtc cgaatgtgat ggaagcctgt
     8161 ccatactgaa aaaaagtcta taaaggagaa atatgatgag tcaacactct gccggagcac
     8221 gtttccgcca agccgtgaaa gaatcgaatc cgcttgccgt cgccggttgc gtcaatgctt
     8281 attttgcacg attggccacc caaagcggtt tcaaagccat ctatctgtcc ggcggcggcg
     8341 tggcagcctg ttcttgcggt atccctgatt tgggcattac cacaatggaa gatgtgctga
     8401 tcgacgcacg acgcattacg gacaacgtgg atacgcctct gctggtggac atcgatgtgg
     8461 gttggggcgg tgcattcaat attgcccgta ccattcgcaa ctttgaacgc gccggtgttg
     8521 cagcggttca catcgaagat caggtagcgc aaaaacgctg cggccaccgt ccgaacaaag
     8581 ccattgtatc taaagatgaa atggtcgacc gtatcaaagc tgccgtagat gcgcgcgttg
     8641 atgagaactt cgtgattatg gcgcgtaccg atgcgctggc ggtagaaggt ttggatgccg
     8701 ctatcgaacg cgcccaagct tgtgtcgaag ccggtgcgga catgattttc cctgaagcca
     8761 tgaccgattt gaacatgtac cgccaatttg cagatgcggt gaaagtgccc gtgttggcga
     8821 acattaccga gtttggttcc actccgcttt atacccaaag cgagctggct gaaaacggcg
     8881 tgtcgctggt gctgtatccg ctgtcatcgt tccgtgcagc aagcaaagcc gctctgaatg
     8941 tttacgaagc gattatgcgc gatggcactc aggcggcggt ggtggacagt atgcaaaccc
     9001 gtgccgagct gtacgagcat ctgaactatc atgctttcga gcaaaaactg gataaattgt
     9061 ttcaaaaatg atttaccgct ttcagacggt ctttcaacaa atccgcatcg gtcgtctgaa
     9121 aacccgaaac ccataaaaac acaaaggaga aataccatga ctgaaactac tcaaaccccg
     9181 actttcaaac ctaaaaaatc cgttgcgctt tctggcgttg cggctggtaa taccgaattg
     9241 tgtaccgttg gccgtaccgg caacgatttg agctatcgcg gttacgacat cttggatttg
     9301 gcacaaaaat gcgagtttga agaagtcgcc cacctgctga ttcacggtca tctgcccaac
     9361 aaattcgagc tggccgctta taaaaccaag ctcaaatcca tgcgcggcct gcctatccgt
     9421 gtgattaaag ttttggaaag cctgcctgca catacccatc cgatggacgt aatgcgtacc
     9481 ggcgtatcca tgctgggctg cgttcatcct gaacgtgaaa gccatccgga aagtgaagcg
     9541 cgcgacatcg ccgacaaact gatcgccagc ctcggcagca tcctcttgta ctggtatcaa
     9601 tattcgcaca acggcaaacg cattgaggtt gaaagcgacg aagagaccat cggcggtcat
     9661 ttcctgcaac tgttgcacgg caaacgccca agcgaatcac acatcaaagc catgcacgtt
     9721 tcactgattc tgtatgccga acacgagttc aacgcttcta cctttaccgc ccgcgtgatc
     9781 gccggtacag gctctgatat gtactccagc attaccggag caatcggcgc gttgaaaggt
     9841 ccgaaacacg gcggcgcgaa cgaagtggct tacgatattc aaaaacgcta ccgcaatgcc
     9901 gacgaagctg aagccgacat ccgcgaacgc atcggccgca aagaaatcgt gatcggtttc
     9961 ggtcatccgg tgtacaccat ttccgaccct cgcaacgttg tcattaaaga agtggcacgc
    10021 ggtttgagca aagaaaccgg cgatatgcgc ctctttgaca ttgccgaacg tttggaaagc
    10081 gtgatgtggg aagagaaaaa aatgttcccg aatctggact ggttctctgc cgtttcctac
    10141 caaaaattgg gcgtaccgac cgctatgttc acaccgctgt tcgtaatttc ccgtacaacc
    10201 ggttggagcg cacacgttct tgagcaacgc aaagacggca aaatcatccg tccgagcgca
    10261 aactacacgg gccctgaaga tttggcgttt gtggagattg aagaacgctg atgattttca
    10321 gacgaccttg tttgtacaag gtcgtctgaa aaaagaaatt taatgaattt attggcacac
    10381 taattattaa tgcggaacat ttgatggata aggacaaggg gtcttatgcg ggtattcctg
    10441 tacaaaatac caaagagtta gtttggcaga aaatacaaga catacctatt tctgaatgtg
    10501 gggaaccgtt ggtcagtgtt ggtaataccg gacgcattcg tgtcaatcct gtttattttt
    10561 ctcagggtat tgaaggggcg ataaatagtg ttttattgcg tagaagtgtt gctgataggc
    10621 tgactcaggt tgtctctttg ctgccggaag tgtacgggtt ggaaattttt gatggttggc
    10681 gtcctgtcat agtgcaaaga gcattacgag aaaatatgaa gcaagaaatt gaaaaacgcc
    10741 atccggaata tgatgaagtt caagttagag aagcactgga ctgttttgct gctgatccag
    10801 atcgggcagg aatgcctctg ccccatttga caggcggatc tgttgatgtc ggattgtttg
    10861 atataaaaag tggcaaaagt ttggatatgg gaagtgagtt tgatgcaact ggacatttat
    10921 cttatagcga tgctttagag aaagaaggtg agtatttctc ctctgctcgt aatttacgcc
    10981 ggattttgat tcatgcgatg aaagaggcag gatttagtaa tttgccaacc gaatggtggc
    11041 atttcgatta tggcaaccaa aattgggctt attttaccca acaaagcaac gcagtttttg
    11101 gggcggtaga agagcaggat acttaaatta aaataaaaat tgggaggaaa aatgcaaact
    11161 ttaatttcag cagataatca tttgctgctg tgggcttttg ttatgttagc tgccgctgct
    11221 gcgattttta ttgagcaaaa cagtcgcttg gctgggaaag tccctggtgc agtattagct
    11281 ttattgattg cgttgattgc ttctaatttg ggtgttattc cgacggatgc tccagtattt
    11341 gatgctgtat ggtcttatat tgtacctctt gctattccgt tgttattgtt tcaattagat
    11401 cttcatgctc tatttaagga aagtggacgt atgctgttta ttttcctgat tagttcacta
    11461 gggacggtca ttggaacgct tgtctcattt gcactattga aaaactatat tcctgaacta
    11521 gataaggtag ctggcatgat ttcagcatct tatacgggag gtggtgttaa ttttgcagct
    11581 atgtcagcta agcttaaccc tgctaaagat gttattgcag caacaattgt tgctgataat
    11641 ttgatgatgg cttgttactt ttttattttg attggtatct cttcctcata ttgggtcaga
    11701 aaagtttggg gaagtccata tcaggataaa ttggagcagg aatatcatga tccgagtgtg
    11761 aataaggctg ccgagtattg gaaacctaaa tccatttcgc tacagagtat agccttatct
    11821 ttggctgcct cgattttgtt ggtcgcagtt tcattctcat tatccagttt tttgcaaaat
    11881 cattttcaaa gtgttgatgg tgttgcatta aaaatgctga caggtttaat tagtgacaaa
    11941 tatttgctgt taacgacatt tacattggca gttgttttat ttttccgtaa aggcattcaa
    12001 aaactagatg gcagtcaaga attagggaca tattgtattt atctgttttt tgttgtgatt
    12061 ggtgttcctg cctctatacc gttaattatt aaaacagcac cattactctt tgtttttact
    12121 ttgattattg cggtattgaa tttgttactg acgttagtgt taggcaagct gttcaaattc
    12181 agtattgaag aaattgtatt ggcttgtaat gccaatattg gagggccgac tactgcagca
    12241 gccttagcca tcagtaaagg ttggcgtgat ttagtcggtg caattttgtt aattggtact
    12301 gtaggctaca ttatcggtaa ctatataggt tcgtttgtat atgccctatt gagctgaaga
    12361 ctaatctaac aatccatgaa ccttttcaga cgaccccctt caaaaaacgt cgtctgaaac
    12421 cccaaaccac aagaaaaata gatccacagg agaactgaac atggctgcca accaacgtta
    12481 ccgcaaaccg ctacccggta cggatttgga atactacgac gcgcgtgcgg cgtgtgagga
    12541 catcaaaccc ggctcttacg acaagctgcc ttatacaagc cgtatcttgg ctgagaactt
    12601 ggtcaaccgc gcagacaaag tcgacctgcc gacgctgcaa agctggctgg gtcagctgat
    12661 tgagggaaaa caggaaatcg actttccttg gtatccggcg cgggtggtgt gccacgatat
    12721 tctggggcag accgcgttgg tggatttggc aggtctgcgc gatgcgattg ccgaaaaagg
    12781 cggcgatcct gccaaagtga atccggtggt gcaaacccag cttatcgtcg accactctct
    12841 ggcggtggag tgcggcggtt acgatcctga tgccttccgc aaaaaccgcg aaatcgaaga
    12901 ccggcgcaac gaagaccgtt tccacttcat caactggaca aaaaccgcat ttgaaaatgt
    12961 ggacgtgatt ccggcgggca acggcattat gcaccaaatc aatctggaaa aaatgtcgcc
    13021 cgtcgtccaa gtcaaaaacg gcgtggcgtt ccccgatacc tgcgtcggca cggattcgca
    13081 cacgccgcac gtcgatgcgc tgggcgtgat ttccgtgggc gtgggcggat tggaagcgga
    13141 aaccgtgatg ctgggtcgcg cgtccatgat gcgcctgccc gatattgtcg gcgttgagct
    13201 gaacggcaaa cggcaggcgg gcattacggc gacggatatt gtgttggcac tgaccgagtt
    13261 tctgcgcaaa gaacgcgtgg tcggggcgtt tgtcgaattc ttcggcgagg gcgcgagaag
    13321 cctgtctatc ggcgaccgcg cgaccatttc caacatgacg ccggagttcg gcgcgactgc
    13381 cgcgatgttc gctattgatg agcaaaccat tgattatttg aaactgaccg gacgcgacga
    13441 cgcgcaggtg aaattggtgg aaacctacgc caaaaccgca ggcttatggg cagatgcctt
    13501 gaaaaccgcc gtttatccgc gcgttttgaa atttgatttg agcagcgtaa cgcgcaatat
    13561 ggcaggcccg agcaacccgc acgcgcgttt tgcgaccgcc gatttggcca gcaaaggctt
    13621 ggctaaacct tacgaagagc cttcagacgg ccaaatgccc gacggcgcgg tcatcatcgc
    13681 cgcgattacc agttgcacca acacttccaa cccgcgcaac gttgttgccg ccgcgctctt
    13741 ggcgcgcaac gccaactgct tcgggctgaa acgcaaaccg tgggtcaaaa cctcgtttgc
    13801 ccccggttcg aaagtggcgg aaatttattt gaaagaagca ggcctgctgc ccgaaatgga
    13861 aaaactcggc ttcggtatcg tcgccttcgc ctgcaccacc tgcaacggca tgagtggcgc
    13921 gctggatccg aaaatccaga aagaaatcat cgaccgcgat ttgtacgcca ccgccgtatt
    13981 atcaggcaac cgcaacttcg acggccgtgt ccatccgtat gcgaaacagg ctttcctcgc
    14041 ttcgcctccg ttggtcgttg cctacgcgct ggcaggcagt atccgtttcg atattgaaaa
    14101 cgacgtactc ggcgttgcag acggcaagga aatccgcctg aaagacattt ggcctgccga
    14161 tgaagaaatc gatgccgtcg ttgccgaata tgtgaaaccg cagcagttcc gcgatgtgta
    14221 tgtaccgatg ttcgacaccg gcacagcgca aaaagcacct agtccgctgt acgattggcg
    14281 tccgatgtcc acctacatcc gccgtccgcc ttactgggaa ggcgcgctgg caggggaacg
    14341 cacattaaga ggtatgcgtc cgctggcgat tttgcccgac aacatcacca ccgaccacct
    14401 ctcgccgtcc aatgcgattt tggccgtcag tgccgcaggc gagtatttgg cgaaaatggg
    14461 tttgcctgaa gaagacttca actcttacgc aacccaccgc ggcgaccact tgaccgccca
    14521 acgcgctacc ttcgccaatc cgaaactgtt taacgaaatg gtgaaaaacg aagacggcag
    14581 cgtgcgccaa ggctcgttcg cccgcgtcga acccgaaggc gaaaccatgc gcatgtggga
    14641 agccatcgaa acctatatga accgcaaaca gccgctcatc atcattgccg gtgcggacta
    14701 tggtcaaggc tcaagccgcg actgggctgc aaaaggcgta cgcctcgccg gcgtagaagc
    14761 gattgttgcc gaaggcttcg agcgtatcca ccgcaccaac cttatcggca tgggcgtgtt
    14821 gccgctgcag ttcaaacccg acaccaaccg ccataccctg caactggacg gtacggaaac
    14881 ctacgacgtg gtcggcgaac gcacaccgcg ctgcgacctg accctcgtga ttcaccgtaa
    14941 aaacggcgaa accgtcgaag ttcccgttac ctgccgcctc gatactgcag aagaagtatt
    15001 ggtatatgaa gccggcggcg tgttgcaacg gtttgcacag gattttttgg aagggaacgc
    15061 ggcttagagg tcgtctgaaa agcaagacgt agcgtgggtc gggttcaaca ttttgctcat
    15121 tcacgtaatt ctcgatatgg caggcat
//
LOCUS       DAWGNT010000033        14911 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.033, whole genome shotgun sequence.
ACCESSION   DAWGNT010000033 DAWGNT010000000
VERSION     DAWGNT010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14911
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.033"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(104..1888)
                     /gene="lpdA"
                     /locus_tag="WHR98_000750"
     CDS             complement(104..1888)
                     /gene="lpdA"
                     /locus_tag="WHR98_000750"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEZ2307454.1"
                     /translation="MSLVELKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKA
                     TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTAAAPKAEAAAAPAQEAPKAAA
                     PAPQAAQFGGSADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVG
                     CIPSKALLHNAAVIDEVHHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKS
                     RKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAATTGEKKIVAFKNCIIAAGSRVTKLPF
                     IPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG
                     ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVA
                     AGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEG
                     HVAAENCAGHKAYFDARVIPGVAYTSPEVAWVGETELSAKASGRKITKANFPWAASGR
                     AIANGCDNGFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHP
                     HPTLGESIGMAAEVALGTCTDLPPQKKK"
     gene            complement(1965..3572)
                     /gene="aceF"
                     /locus_tag="WHR98_000751"
     CDS             complement(1965..3572)
                     /gene="aceF"
                     /locus_tag="WHR98_000751"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HEZ2307455.1"
                     /translation="MSIVEIKVPDIGGHENVDIIAVEVKAGDTIAVDDTLITLETDKA
                     TMDVPADAAGVVKEVKVKVGDKISEGGVILTVETGAAAAEAAPAAAEAQPAPAAAPVA
                     AGGATVQVAVPDIGGHTDVDVIAVEIKVGDTVAEDDTLITLETDKATMDVPCTAAGVV
                     KAVFLKVGDKVSEGTAIIEVETAGSAAAAPAQAAQAAAPAAAPPPTAAAAPAAAPAPS
                     APAAAKIDEAAFAKAHAGPSARKLARELGVDLGQVKGTGLKGRIVGDDIKAFVKSVMQ
                     GGAAKPAAAGASLGSSLDLLPWPKVDFSKFGNVEVKELSRIKKISGQNLSRNWVVIPH
                     VTVHEEADMTELEEFRKQLNKEWEREGVKLSPLAFIIKASVSALKAFPEFNASLDGDN
                     LVLKNYFNIGFAADTPNGLVVPVIKDVDQKGLKQISQELTELSKKAREGKLKPQEMQG
                     ACFTISSLGGIGGTGFTPIVNAPEVAILGVCKSQIKPIWNGKEFAPRLMCPLSLSFDH
                     RVIDGAAGMRFTVFLAKLLKDFRRITL"
     gene            complement(3722..6385)
                     /gene="aceE"
                     /locus_tag="WHR98_000752"
     CDS             complement(3722..6385)
                     /gene="aceE"
                     /locus_tag="WHR98_000752"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HEZ2307456.1"
                     /translation="MSTQLHDVDPIETQEWLDALSSVLEYEGGERAQYLLENLVKYCR
                     DKGVRMPHGTTTPYLNTVSVENEKGIPGDQNIEHRIRAFVRWNAAAIVLRAGKKDLEL
                     GGHIASFQSAATMYEVGFNHFWKAKGEGEEGDLVFFQGHVAPGIYARAFVEGRLTEDQ
                     LNNFRQEVDGHGLPSYPHPHLLPDFWQFPTVSMGLGPIMAIYQARFLKYLESRGLAKT
                     KGRKVWCFCGDGEMDEPESQGAIALAAREGLDNLIFVINCNLQRLDGPVRGNGKIIQE
                     LEGNFAGAGWNVVKVIWGRRWDRLLAKDKDGILRQRMEECLDGDYQTYKSKDGAYVRE
                     HFFNTPELKALVADMTDEQLWALNRGGHDPQKVYNAYDRAANHADGKPTVILAKTIKG
                     YGMGASGEGQNVAHQAKKMDKASLKQFRDRFDIPVTDEQIESGDLPYLTFAPDTEEYK
                     YLHARRDALGGYLPQRKPTQEVLEVPELSAFDAQLKSSGEREFSTTMAFVRILSTLLK
                     DKKIGKRVVPIVPDESRTFGMEGMFRQYGIWNPKGQQYTPQDKDQLMFYKESVDGQIL
                     QEGINEPGAMADWIAAATSYANSNFAMIPFYIYYSMFGFQRIGDLAWAAGDMHARGFL
                     LGGTAGRTTLNGEGLQHEDGHSHIQADLIPNCVSYDPTFQYEVAVIVQDGLRRMYANN
                     EDVFYYITLMNENYTHPDMPEGAEQDILKGMYLLKAGGKGDKKVQLMGSGTILQEVIA
                     GAELLKADFGVEADIWSCPSFNLLHRDAIETERFNRLHPLEAEKVPFVTSQLQGHDGP
                     VIAATDYIRSYADRIRAYIPNDYHVLGTDGFGRSDSRANLRRFFEVDRYNVAVAALAA
                     LAEQGKVSKETVQQAIEKYGIKADSAPSWKR"
     gene            7079..8791
                     /locus_tag="WHR98_000753"
     CDS             7079..8791
                     /locus_tag="WHR98_000753"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEZ2307457.1"
                     /translation="MKASQFFISTLKEAPAEAALASHKLMIRAGLIKANASGLYTWMP
                     MGLRVLRKVENVVREEMARAGSVELLMPVVQPAELWQESGRWEFYGKELLRLKDRHDR
                     DFCMGPTCEEVIADIVRKEINSYKQLPKNFYHIQTKFRDEVRPRFGVMRAREFVMKDA
                     YSFHADYASLQTTYDAMYDAYCRIFTRLGLAFRPVAADTGSIGGTGSHEFQVLAESGE
                     DVIAYSDTSDYAANIELAPTLPLKGERAAAQAVLTKVHTPNVKTIESLVEFLNIPVEQ
                     TLKSIVVEGENEGEIVLLLLRGDHEFNDIKAEKLAGVKSPLTMASPAAIVEQFGANGG
                     SLGPVGFKGKVYADFATEKGADWVIGANEDGYHYTGFNFGRDAAEPEFVDLRNVVEGD
                     ESPDGQGRLKLARGIEVGHVFQLRDKYTKAMNVSFLDNNGKSQIMEMGCYGIGITRVV
                     AAAIEQNNDEKGIIWTKAMAPFEVVIVPMNYKKSDTVREAADKIYAELLAAGADVLLD
                     DRDERAGVLLNDSELLGIPHRIVIGDRALKEGNVEYAERRNNEAQAVAIGEIVARVTA
                     SLNG"
     gene            8854..9510
                     /locus_tag="WHR98_000754"
     CDS             8854..9510
                     /locus_tag="WHR98_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEZ2307458.1"
                     /translation="MASVFLEGEAVEVGNIFCIGRNYAAHIEELKNEIPSEPVVFMKP
                     SGSILNSGGTILLPEFSRDVQFECELVLLVGKDSDGMGEGEDILGCVAGYGVGLDLTA
                     RDIQCHLKAQGLPWLKAKGFRHSACVSDFAAADRIGNPEKVLFSLKQNGVLKQRGDTG
                     LMIYPIREILHKLAADYGLGKGDLVFTGTPSGVGAIGAGDNLALELDGLVRASFTVGC
                     "
     gene            complement(9520..9975)
                     /gene="ruvX"
                     /locus_tag="WHR98_000755"
     CDS             complement(9520..9975)
                     /gene="ruvX"
                     /locus_tag="WHR98_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEZ2307459.1"
                     /translation="MHKIPKGTALAFDFGEARIGVAQGDAELGLSHPLSTVTGGSNDE
                     KFAAIAKLVQEWQPRYFVVGLPVHTDGTKHEMTHLSRKFGRRLNGRFNLPVYWVDERL
                     SSVYAESLLSEAQVFGKKRKSVLDQVAAQAILHGFFEGGPAECFNGREG"
     gene            complement(9968..10516)
                     /locus_tag="WHR98_000756"
     CDS             complement(9968..10516)
                     /locus_tag="WHR98_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HEZ2307460.1"
                     /translation="MNLSNHFLVAMPDMEDAFFSQSVVYICKHDEDGALGIAINKPSP
                     ITMDMIFSATGKNIPMRMQHDSVMMGGPVQVERGYVVHTPIGNWQSSIGVSDNIALTS
                     SRDVIENISREGAVDKALISIGYSSWGKGQLERELADNAWLTVPADEHILFDIPYEHR
                     YAAAFAKLGIDPLALFSGAGHA"
     gene            complement(10518..11078)
                     /locus_tag="WHR98_000757"
     CDS             complement(10518..11078)
                     /locus_tag="WHR98_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CreA family protein"
                     /protein_id="HEZ2307461.1"
                     /translation="MNRLLLLSAAVLLTACGSGETDKIGRASTVFNILGKNDRIEVEG
                     FDDPDVQGVACYISYAKKGGLKEMVNLEEDASDASVSCVQTASSISFDETAVRKPKEV
                     FKHGASFAFKSRQIVRYYDPKRKTFAYLVYSDKIIQGSPKNSLSAVSCFGGGIPQTDG
                     VQADTSGNLLAGACMISNPIENPDKR"
     gene            11407..13212
                     /locus_tag="WHR98_000758"
     CDS             11407..13212
                     /locus_tag="WHR98_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEZ2307462.1"
                     /translation="MRYKPLLLALMLVFSTPAVAAHDAAHNRSAEVKKQTKNKKEQPE
                     AAEGKKEKGKNGAVKDKKTGGKEAAKEGKESKKTAKNRKEAEKEATSRQSVRKGHEGD
                     KKSKAEHKKAHGKPVSGSKEKNAKTQPENKQGKKEAKGQGNPRKGGKAEKDTVSANKK
                     VRSDKNGKAVKQDKKYREEKNAKTDSDELKAAVAAATNDVENKKALLKQSEGMLLHVS
                     NSLKQLQEERIRQERIRQERIRQARGNLASVNRKQREAWDKFQKLNTELNRLKTEVAA
                     TKAQISRFVSGNYKNSQPNAVALFLKNAEPGQKNRFLRYTRYVNASNREVVKDLEKQQ
                     KALAVQEQKINNELARLKKIQANVQSLLKKQGVTDAAEQTESRRQNAKIAKDARKLLE
                     QKGNEQQLNKLLSNLEKKKAEHRIQDAEAKRKLAEARLAAAEKARKEAAQQKAEARRA
                     EMSNLTAEDRNIQAPSVMGIGSADGFSRMQGRLKKPVDGVPTGLFGQNRSGGDVWKGV
                     FYSTAPATVESIAPGTVSYADELDGYGKVVVVDHGENYISIYAGLSEISVGKGYMVAA
                     GSKIGSSGSLPDGEEGLYLQIRYQGQVLNPSSWIR"
     gene            13332..14816
                     /locus_tag="WHR98_000759"
     CDS             13332..14816
                     /locus_tag="WHR98_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEZ2307463.1"
                     /translation="MSKPVFKKIALYTLGAISGVAVSLAVQGFAAEKDRRDNEVLPVQ
                     SIRTMAEVYGQIKANYYQDKPDADLFEGAMKGMVAGLDPHSEYMDKKGYAEIKESTSG
                     EFGGLGMEIGQEDGFVKVVSPIEDTPAERAGVKSGDFIVKIDNVSTRGMTVSEAVKKM
                     RGKPGTKITLTLSRKNADKPIVVNLTRAIIKVKSVRHHLIEPDYGYIRVSQFQEKTVE
                     SVNTAAKELLKENKGKPLKGLVLDLRDDPGGLLTGAVGVSAAFLPSEAVVVSTKGRDG
                     KDRMVLKAIPEDYVYGMGGDSLAGIPAELKTIPMTVLVNSGSASASEIVAGALQDHKR
                     AVIVGTQSFGKGSVQTLIPLSNGSAVKLTTALYYTPNDRSIQAQGIVPDVEVKDKERI
                     FESREADLVGHIGNPLGGEDVNSETLAVPLEKDADKPAVKEKGKKKKDEDLSSRRIPN
                     PAKDDQLRKALDLVKSPEQWQKSLGLAAKKPVSNKDKKDKKDKK"
BASE COUNT         3537 a         3695 c         4203 g         3476 t
ORIGIN      
        1 ccggagaaga tattttaatc cgctgtaaaa tagaaaatgc cgtctgaaca tttcagacgg
       61 cattttctca aataaacctt atcggctgtt tattcagtcg gatttatttt ttcttttgcg
      121 gaggcaggtc ggtacaagta cccaatgcca cttccgccgc cataccgatg gattcgccca
      181 aggtcgggtg cgggtggatg gttttgccga tgtctgccgc gtcgcagccc atttcgatgg
      241 caaggcagac ttcgccgatc atgtcgccac cgttcggacc gacaatgccg ccgccgatga
      301 tgcggccggt ttcggcatca aaaatcagct tggtaaagcc gttgtcgcaa ccgttggcaa
      361 tcgcacggcc ggaagccgcc cacgggaagt tggctttggt gattttgcgg ccggatgctt
      421 tggcggacaa ctcggtttcg cccacccacg ccacttcggg ggaagtgtag gcaacgcccg
      481 gaatcacgcg cgcgtcgaag taggctttgt ggccggcgca gttttcagca gcaacgtggc
      541 cttcgtgaac ggctttgtgt gccaacattg gttgaccgac gatgtcgccg atggcgtaga
      601 tgtgcggcac attggtacgc atttgtttgt ccacttcgat gaagccgcga tcggtaacgg
      661 caacgcctgc tttttccgcg ctgatgagtt tgccgttggg cgcgcggccg gcggcaacca
      721 atacggcatc gtaacgttgc ggctctttag gcgcatttgc accttcaaag gtaacgtaaa
      781 cgccgtcttc tttcggctcg actgcaacgg ttttggtgtt gaccataatg ttgtcaaaac
      841 ggtattcgtt ttgtttttgc catactttca ccaagtcgcg gtctgcgcct tgcatcaggc
      901 cgtccatcat ttcaaccaca tccaaacgcg aacccagcgt gctgtaaacc gtacccatct
      961 cgaggccgat aatgccgccg ccgataatca gcagtttgcc cggtacttct ttcagagcca
     1021 atgcgccgct ggaatcgatg atgcgcggat cttcaggaat gaaaggcagt ttggttacgc
     1081 ggctgcctgc tgcaatgata cagtttttga aggcaacgat ttttttctcg ccggtagtgg
     1141 ctgcctgttc gtacgcgtcg ccggcagtca gcgacacttc caagtggtgc gggtctaaga
     1201 attgcccgtc gccttggata acgtccactt tacggctttt cgccatacct gccaaaccgc
     1261 ccgtgaggcg ggaaactacg ccgtctttgt aggcgcgaag catatcgatg tcgagttccg
     1321 gctcggggta tttgataccg ttggcagcca agtggtgcac ttcgtcgata acggcggcat
     1381 tgtgcaacaa ggctttggaa gggatacagc cgacgttcag gcaaacgccg cccaaagttt
     1441 tgtaacgttc gacgatggcg actttcaagc cttcatcggc agcggcaaat gcagcggagt
     1501 aaccgccggg accgccaccc aatacgacca cgtcgtactc ggcatcggca gaaccgccga
     1561 attgcgcggc ttgcggagca ggagcagcag ctttaggggc ttcttgcgcc ggggcggcag
     1621 ccgcttcggc tttaggagcg gcagccgtgc cttcagcttc aacgacaaca atcaaaccgc
     1681 cttcggagat tttgtcgccg actttgactt tcacttcttt gaccacgccc gcaacttcgg
     1741 caggcacgtc catcgtcgct ttgtcggttt ccaaggtaat cagggtgtcg tcaacggcga
     1801 tggtgtcgcc cacgtttact tcaaccgcga taatatctac attttcgtgt ccgccaatgt
     1861 cgggcacttt caattcaact aagctcatgt ctcatctttc tgaatgatgt tcaaacttcc
     1921 ttttcagacg gcacagaccg ctatgccgtc tgaagccgat cgggttacag ggtaatgcgg
     1981 cggaagtctt tcaacagctt cgccaagaat acggtaaagc gcataccggc cgcaccgtcg
     2041 atgacgcggt ggtcgaagga caggctcaac gggcacatca ggcgcggggc aaactctttg
     2101 ccgttccaaa tcggtttgat ttgggatttg cacacgccca agatggcgac ttcgggagcg
     2161 tttacaatcg gcgtgaagcc tgtgccgccg ataccgccca agctggaaat ggtaaagcac
     2221 gcgccttgca tttcttgcgg tttgagcttg ccttcgcggg cttttttgga caattcggtc
     2281 agctcttggc tgatttgttt caagcctttt tgatccacgt ctttgatgac gggaacaacc
     2341 aagccgttcg gcgtatcggc tgcgaaaccg atgttgaagt agtttttcag caccaggttg
     2401 tcgccgtcca gagaagcgtt gaattcgggg aaggctttca gcgcggaaac ggaggctttg
     2461 atgatgaacg ccaacggtga cagtttcacg ccttcgcgtt cccattcttt gttcagttgt
     2521 ttgcggaatt cttccagctc ggtcatatct gcttcttcgt gtacggtaac gtggggaatc
     2581 accacccagt tgcgagacag gttttgaccg gagattttct taatgcggga caattcttta
     2641 acttcgacat tgccgaattt ggagaagtcc actttaggcc acggcagcaa gtccagactg
     2701 ctgcccaaag atgcgccggc tgcggcaggt tttgccgcgc caccctgcat tacggatttc
     2761 acaaaggctt tgatgtcgtc gcccacgata cggcctttca agccggtacc tttgacttgg
     2821 cccaaatcca cgcccaattc gcgcgccagt ttgcgtgcgg aagggccggc gtgtgctttg
     2881 gcgaaagcgg cctcgtcgat tttggcagcg gcaggtgcag aaggtgcagg cgcggcggcg
     2941 ggtgcggcgg cagcagtcgg aggcggagcg gcagccggtg cggcagcttg agcggcttga
     3001 gcaggggctg ctgcggcaga gccggcggtt tctacttcga taatggcagt accttcggac
     3061 actttgtcgc cgacttttaa gaatacggct ttaacgacac cggcagcggt acaaggtacg
     3121 tccatcgttg ctttgtcggt ttccaaagta atcagcgtgt cgtcttcggc aacggtatcg
     3181 ccgactttga tctcgacggc gattacatcc acatcggtat ggccgccgat gtcgggaacg
     3241 gctacttgaa cggttgcacc gcctgcggca acgggtgcgg cagcaggtgc aggttgtgct
     3301 tcggcagcag caggagcggc ttcggcagcg gcggcaccgg tttcaacggt caaaattacg
     3361 ccgccttcgg agattttgtc gccgactttg actttaactt ctttcacgac accggccgca
     3421 tcggcaggca catccatcgt ggctttgtcg gtttccaaag taatcagggt gtcgtcaacg
     3481 gcgatggtgt cgcccgcttt aacttctacg gcgatgatgt cgacgttttc gtgaccgccg
     3541 atatcgggga ctttgatttc tacgatactc atttgagttc ctttaatctt tttcagttgg
     3601 atgccgtctg aaaactgctt cacgcggcat cggtacggtt tgtctgttca aaccattcgg
     3661 gcattcggtt ttcagacggc atgatgtctg aatggggcaa acaggccgtc tgaaacatca
     3721 atcagcgttt ccagctaggg gctgaatcgg ctttgatgcc gtatttttca atggcttgtt
     3781 gaacagtttc tttgctgact ttgccttgtt ccgccaatgc ggccaatgct gctacggcaa
     3841 cgttgtagcg atccacttca aagaagcggc gcaggttggc gcgactgtcg gaacggccga
     3901 aaccgtcagt gcccaagacg tggtagtcgt tagggatgta ggcacggatg cggtcagcat
     3961 agctgcggat atagtcggta gcggcgataa ccggaccgtc atgaccttgc agttgagagg
     4021 taacgaaagg cactttttca gcttccagcg gatgcaggcg gttgaagcgt tcggtttcga
     4081 tggcgtcgcg gtgcagcagg ttgaaggacg ggcaagacca gatgtctgct tccacgccga
     4141 agtcggcttt cagcagctcg gcaccggcaa tcacttcttg cagaatcgta ccggaaccca
     4201 tcagttggac tttcttgtcg cctttgccgc cggctttcag caggtacata cctttcaaga
     4261 tgtcttgttc cgcaccttcg ggcatatccg gatgggtgta gttctcgttc atcagggtga
     4321 tgtagtagaa cacgtcttca ttattggcat acatacggcg cagaccgtct tgtacgatga
     4381 cggcgacttc gtattggaaa gtcgggtcat aagatacgca gttcggaatc aggtcggcct
     4441 ggatgtggct gtggccgtct tcgtgttgca ggccttcgcc gttcagcgtc gtacggccgg
     4501 cagtaccgcc cagcaggaag ccgcgcgcgt gcatatcgcc cgccgcccaa gccaagtcgc
     4561 cgatacgttg gaaaccgaac atagaatagt aaatgtagaa cggaatcatg gcgaagttgc
     4621 tgttggcgta gctggttgca gccgcaatcc agtcggccat cgcgcccggt tcgttaatac
     4681 cttcttgcaa gatttgaccg tcaacggatt ctttatagaa catcagttgg tctttgtctt
     4741 gaggggtata ttgctgacct ttcggattcc aaataccgta ttggcggaac ataccttcca
     4801 tgccgaaagt acggctttcg tcgggaacga taggtacgac gcgtttgccg atttttttgt
     4861 ctttcagcaa agtggacagg atgcggacga atgccatcgt ggtcgagaac tcgcgttcac
     4921 cgctggattt gagttgtgcg tcgaatgctg acagctcggg cacttccaat acttcctgcg
     4981 tcggtttgcg ttgcggcagg tagccgccca aagcatcgcg gcgtgcgtgc aggtatttgt
     5041 attcttccgt atcgggggca aaagtcaggt aaggcagatc gccgctttcg atttgttcgt
     5101 cggtaaccgg aatgtcaaag cggtcgcgga attgtttcag ggacgctttg tccatttttt
     5161 tggcttggtg ggcaacgttc tgaccttcgc cggatgcgcc cataccgtaa cctttaatgg
     5221 ttttcgccaa gatgacggta ggtttgccgt cggcatggtt cgctgcgcgg tcgtaggcgt
     5281 tgtacacttt ttgcgggtcg tggccgccgc ggttcaatgc ccagagttgc tcatcggtca
     5341 tatcggcaac caatgctttc agttcgggcg tattgaagaa gtgttcgcgc acatacgcgc
     5401 cgtctttgga tttgtaagtt tggtagtcgc cgtccaaaca ttcttccata cgttggcgca
     5461 ggataccgtc tttgtctttc gccaagaggc ggtcccagcg gcggccccaa atgactttga
     5521 cgacattcca gccggcgccg gcaaagttgc cttccaattc ttggatgatt ttgccgttgc
     5581 cgcgtaccgg accgtccaag cgttgcagat tgcagttgat gacgaaaatc aggttgtcca
     5641 agccttcgcg tgcagccagt gcgattgcac cttgagattc gggttcgtcc atttcgccgt
     5701 cgccgcagaa acaccatact ttacggcctt tggtttttgc caaaccacgc gattccaagt
     5761 atttcaggaa acgcgcctga taaatcgcca tgatgggccc caagcccatg gatacggtcg
     5821 ggaactgcca aaagtcgggc aagaggtggg ggtgcggata ggaaggcaga ccgtgtccgt
     5881 ccacttcttg gcggaagttg ttcagctggt cttcggtcag acggccctcg acgaatgcgc
     5941 gtgcatagat gcccggggcg acgtgacctt ggaagaagac caaatcgcct tcttcgcctt
     6001 cgcctttggc tttccaaaag tggttgaaac cgacttcgta catggtggcg gcagattgga
     6061 aagatgcgat gtgcccaccc agttccaaat ctttcttgcc ggcgcgcaat acgatggcgg
     6121 cggcgttcca gcgcacgaat gcgcggatgc ggtgttcgat gttttggtcg cccggaatgc
     6181 ctttttcgtt ttcaaccgaa acggtattca aatacggggt ggtcgtgccg tgtggcatac
     6241 gtacgccctt gtcgcggcag tatttgacca ggttttccaa gaggtattgc gcgcgttcgc
     6301 cgccttcata ttcgaggacg gagcttaacg cgtccagcca ctcttgggtt tcgatagggt
     6361 caacatcgtg taattgggtg gacatagtat ctatccttta tgttgagtgt ttaatcggca
     6421 gggagggtgt agccaacccc tttattttcg tttgtgaaaa ataataagca aaaacgaaaa
     6481 tttctaaatc aaaccgaaaa aaataattta agtttaatgt tttcaaaaaa ttataaaagt
     6541 tttggaaaca agggaaaact tgaaaaaaat gttcgatctg ctccacacga aatcctatca
     6601 gcaatcgggt ctgctggcaa ataaccatgc ctgtaaaagc aggttttata ctgaagttgg
     6661 cgtttggtaa ggtcaagtct ttttgatttc gaaatattct gtttgatttt ggcgatattt
     6721 tttcggaatt gtggtatatc gaatcattat gtctctgtcg gcaattttcc tattgtagaa
     6781 aatctataca caagctttgt ggataaccgt gttgataagc cacggcttgt gttaaaaaag
     6841 tcttacgcaa caaatgtacg cttattttga ttaaaaaata ggcacattta aatctataaa
     6901 aatcatgtgc ttatgttcaa tatgatgttt ctggtcatgt ttttgccgtc tgttatggga
     6961 tttgtcccgc gcttggggca gggggtaaat tttggaggtt ggtgcaaaac ctgctttttt
     7021 cgcgttacaa tctgcacccg atttactttt gaatttgcct gtttggaaaa atatttttat
     7081 gaaagccagc caattcttta tctctacttt aaaagaagcc cctgccgaag ccgcgcttgc
     7141 cagccacaag ctgatgatac gcgccggcct gattaaagcc aacgcgtccg gcctttatac
     7201 ttggatgccg atggggctgc gcgtgttacg caaagtcgaa aacgtcgtgc gcgaggaaat
     7261 ggcgcgcgcg ggcagcgtgg agctgctgat gccggtggtg cagcctgccg agctgtggca
     7321 ggaatccggc cgctgggaat tttacggtaa agaactgctg cgcctgaaag accgccacga
     7381 ccgcgatttc tgcatgggcc cgacctgcga ggaagtcatc gccgacatcg tgcgcaaaga
     7441 aatcaacagc tacaaacagc tgccgaaaaa cttttaccac atccaaacca aattccgcga
     7501 cgaagtgcgc ccgcgtttcg gcgtgatgcg cgcgcgcgag ttcgtcatga aagacgctta
     7561 ttccttccat gccgactacg cctcgcttca gacgacctat gatgccatgt atgacgctta
     7621 ctgccgtatc ttcacccgtc tgggcttggc attccgcccc gtcgccgcag acaccggcag
     7681 catcggcggt acgggttcgc acgagtttca agtgttggcg gaaagcggcg aagatgttat
     7741 tgcgtacagc gacacttccg attacgccgc caatatcgag ttggcaccga ccttgccgct
     7801 taaaggcgaa cgcgccgctg ctcaggctgt gttgaccaaa gtacatacac caaacgtcaa
     7861 aaccattgag tctttggttg aattcctgaa tattccggtt gaacaaaccc tcaaatccat
     7921 cgtggtcgaa ggcgaaaacg aaggcgaaat cgtcttatta ctgttgcgcg gcgaccatga
     7981 gttcaacgac atcaaggcag aaaaactggc gggcgtgaaa tcgccattga cgatggcaag
     8041 ccctgccgcg attgtcgaac agttcggcgc aaacggcggc tctcttggtc ctgtcggctt
     8101 caaaggcaaa gtctatgccg atttcgctac cgaaaaaggc gcggactggg tcatcggtgc
     8161 gaacgaagac ggctaccact ataccggctt caacttcggt cgcgatgccg ccgagcctga
     8221 gtttgtcgat ttgcgcaacg tcgtcgaagg cgacgaaagc cccgacggac aaggccgtct
     8281 gaaactggcg cgcggcattg aagtcggaca cgtcttccag ttgcgcgaca aatatactaa
     8341 agccatgaac gtcagcttcc tcgacaacaa cggcaaatcg caaattatgg aaatgggctg
     8401 ctacggcatc ggcatcaccc gcgtcgttgc cgccgccatc gagcagaata acgacgaaaa
     8461 aggcatcatc tggaccaaag caatggcgcc gtttgaagtc gttatcgtgc cgatgaacta
     8521 caaaaaatca gacaccgtac gcgaagccgc cgacaaaatc tatgccgaat tgctggcggc
     8581 aggcgcggat gtgctgctgg atgaccgcga cgaacgcgca ggcgtattgc tgaacgattc
     8641 cgagctgttg ggtattccgc accgcatcgt catcggcgac cgcgctttga aagaaggcaa
     8701 tgtcgaatac gccgaacgcc gcaacaacga agcgcaggca gttgcaatcg gagaaattgt
     8761 tgcgcgtgta acagcttcat taaatgggta agcttggtca aatgccgtct gaaaataatt
     8821 tcagacggca tttttatttg gggagaaagt gaagtggctt cagtattttt agaaggagaa
     8881 gcagtcgagg tcggcaatat tttctgtatc ggcaggaact atgccgcaca tattgaagag
     8941 ttaaaaaacg aaataccttc cgaacctgtg gtgtttatga agccgtcagg cagcattttg
     9001 aatagcggcg gtacaatctt gctgcccgag tttagtaggg atgtgcagtt tgagtgcgaa
     9061 ctcgtgctgc tggtcggtaa ggattcagac ggcatgggag agggtgaaga tattttggga
     9121 tgtgtggcgg ggtacggcgt gggtttggat ttgaccgcgc gagacatcca atgccatctg
     9181 aaggcgcagg ggctgccctg gctgaaggca aaagggttca ggcattccgc gtgcgtgtcg
     9241 gattttgcgg cggcagacag aatcggcaat cccgagaagg tgttgttttc attaaaacaa
     9301 aacggcgtat tgaaacagcg cggggatacc ggtttgatga tttacccgat tcgggaaatt
     9361 ttacacaaac tggcggcgga ttacggtttg gggaaagggg atttggtgtt taccggaacg
     9421 ccctccggcg tgggcgcaat cggtgcgggg gacaatttgg cattggagct ggacggcttg
     9481 gtgcgcgcct ctttcacggt agggtgttaa ccgcgccgct taaccctcac gcccgttgaa
     9541 acattccgcc ggaccgccct cgaaaaaacc gtgcaagatg gcttgcgccg ccacttggtc
     9601 gagcaccgat ttgcgttttt tgccgaagac ctgtgcttcc gaaagcaggc tttcggcata
     9661 gacggacgac agccgttcgt caacccaata gacggggaga ttgaacctgc cgttcagcct
     9721 gcgtccgaac ttgcgcgaca ggtgcgtcat ttcatgtttc gtgccgtcgg tatgcacggg
     9781 cagtccgacg acaaaataac gcggctgcca ttcttgaacc agcttggcga ttgccgcgaa
     9841 cttttcatcg ttgctgccgc cggtaacggt gctcaaagga tgggatagcc ctaattccgc
     9901 gtctccttgt gccacgccga tacgcgcttc gccgaagtcg aatgccagtg ccgttccttt
     9961 tggaatttta tgcatggccg gctcccgaaa acagggcgag cgggtcgatg ccgagtttgg
    10021 cgaatgcggc ggcgtaacgg tgttcgtagg ggatgtcgaa caggatgtgt tcgtcggcgg
    10081 gaacagtcag ccacgcattg tcggcaagtt cgcgttcgag ctggcctttt ccccagcttg
    10141 aatagcctat gctgatcaag gctttgtcaa ccgcaccttc gcgtgaaata ttttcaatca
    10201 cgtctcggga agaagttagc gcgatattgt ctgaaacgcc gatactgctt tgccagttgc
    10261 cgatcggggt atgcacgaca taacctcgct cgacttgcac cggcccgccc atcatcacgc
    10321 tgtcgtgctg catccgcatg gggatgtttt tgccggtggc ggaaaaaatc atgtccatcg
    10381 taatcggaga gggtttgttg atggcgatgc cgagtgcgcc gtcttcatcg tgtttgcaga
    10441 tatagacgac cgattgtgaa aaaaacgcgt cttccatatc gggcatggcg acgagaaagt
    10501 ggttggagag gttcatatca gcgtttgtcg ggattttcta tcgggttgga aatcatgcag
    10561 gcgccggcaa gcaggttgcc ggaagtatcg gcttgcaccc catcggtttg cggtatgccg
    10621 ccgccgaaac aggaaaccgc gcttaaggaa tttttcggcg agccttggat gattttatcg
    10681 ctgtacacca aataggcgaa ggttttgcgt ttggggtcgt aataacggac aatctgccgg
    10741 ctcttgaacg cgaagctcgc accgtgtttg aaaacttctt tcggtttgcg cacggcggtt
    10801 tcgtcaaaag aaatcgaaga tgccgtctga acgcacgaaa ccgatgcgtc ggacgcgtcc
    10861 tcttccaaat tgaccatttc cttcaagccg cctttttttg catacgaaat ataacaggca
    10921 accccttgaa cgtcgggatc gtcgaatcct tccacttcga tacggtcgtt tttgcccagt
    10981 atgttgaaaa cggtacttgc ccgtccgatt ttatcggttt cgccgctgcc gcaggcagtc
    11041 agcaggacgg cggcagacag cagtagcagt ctgttcatca aaatttcctt attcggttga
    11101 atccccgttt tccgtgaagg cggcagggct tgctttgttt ggaggggcgc acgttcccaa
    11161 aatcgggcaa catacggtat gcggcttaat gtgctaccct gtgtgtcgga acacaatatc
    11221 cgttgcggca ttgaaaatat gatgcacaat ataaggctgt ttgagccgat tgcaagtatc
    11281 cgcgcaaaga aggcgcaaga ttgggcaaac ggcattttca gacggcataa ctgacagtat
    11341 aatccaaacg tccggctgct ttcgtgcagc cttcagtatt atccaacttt ttccgaaggt
    11401 cgaaccatgc gctacaaacc ccttctgctt gccctgatgc tcgttttttc cacgcccgcc
    11461 gttgccgccc acgacgcggc acacaaccgt tccgccgaag tgaaaaaaca gacgaagaac
    11521 aaaaaagaac agcccgaagc ggcggaaggc aaaaaagaaa aaggcaaaaa tggcgcagtg
    11581 aaagataaaa aaacaggcgg caaagaggcg gcaaaagagg gcaaagagtc caaaaaaacc
    11641 gccaaaaacc gcaaagaagc agagaaggag gcgacatcca ggcagtctgt gcgcaaagga
    11701 cacgaagggg ataagaaatc gaaggcggaa cacaaaaagg cacatggcaa gcccgtgtcc
    11761 ggatccaaag aaaaaaacgc aaaaacacag cctgaaaaca agcaaggcaa aaaagaggca
    11821 aaaggacagg gcaatccgcg caagggcggc aaggcggaaa aagacactgt ttctgcaaat
    11881 aaaaaagtcc gttccgacaa gaacggcaaa gcagtgaaac aggacaaaaa atacagggaa
    11941 gagaaaaatg ccaaaaccga ttccgacgaa ttgaaagccg ccgttgccgc tgccaccaat
    12001 gatgtcgaaa acaaaaaagc cctgctcaaa caaagcgaag gaatgctgct tcatgtcagc
    12061 aattccctca aacagcttca ggaagagcgt atccgccaag aacgtatccg ccaagagcgt
    12121 atccgtcagg cgcgcggcaa ccttgcttcc gtcaaccgca aacagcgcga ggcttgggac
    12181 aagttccaaa aactcaatac cgagctgaac cgtttgaaaa cggaagtcgc cgctacgaaa
    12241 gcgcagattt cccgtttcgt atcggggaac tataaaaaca gccagccgaa tgcggttgcc
    12301 ctgttcctga aaaacgccga accgggtcag aaaaaccgct ttttgcgtta tacgcgttat
    12361 gtaaacgcct ccaatcggga agttgtcaag gatttggaaa aacagcagaa ggctttggcg
    12421 gtacaagagc agaaaatcaa caatgagctt gcccgtttga agaaaattca ggcaaacgtg
    12481 caatccctgc tgaaaaaaca gggtgtaacc gatgcggcgg aacagacgga aagccgcaga
    12541 cagaatgcca aaatcgccaa agatgcccga aaactgctgg aacagaaagg gaacgagcag
    12601 cagctgaaca agctcttgag caatttggag aagaaaaagg ccgaacaccg cattcaggat
    12661 gcggaagcaa aaagaaaatt ggctgaagcc agactggcgg cagccgaaaa agccagaaaa
    12721 gaagcggcgc agcagaaggc tgaagcacga cgtgcggaaa tgtccaacct gaccgccgaa
    12781 gacaggaaca tccaagcgcc ttcggttatg ggtatcggca gtgccgacgg tttcagccgc
    12841 atgcagggac gtttgaaaaa accggttgac ggtgtgccga ccggactttt cgggcagaac
    12901 cggagcggcg gcgatgtttg gaaaggcgtg ttctattcca ctgcaccggc aacggttgaa
    12961 agcattgcgc cgggaacggt aagctatgcg gacgagttgg acggctacgg caaagtggtc
    13021 gtggtcgatc acggcgagaa ctacatcagc atctatgccg gtttgagcga aatttccgtc
    13081 ggcaagggtt atatggtcgc ggcaggaagc aaaatcggct cgagcgggtc gctgccggac
    13141 ggggaagagg ggctttacct gcaaatacgt tatcaaggtc aggtattgaa cccttcgagc
    13201 tggatacgtt gatcggattg ccgaaacggt aggctttatg caaatcgtgc cgatatggtg
    13261 cgctgttccg tgaagtttgc cgtacctgta ttttccggtt tttggaaatc aagagagaaa
    13321 gttaaagaag aatgtcgaaa cctgttttta agaaaatcgc actttatact ttgggtgcaa
    13381 tcagcggcgt ggccgtcagt ctggcggtgc agggttttgc cgccgagaag gacaggcggg
    13441 ataacgaagt cctgccggtg caatccatcc gcacaatggc ggaggtttac ggtcaaatca
    13501 aggcaaacta ctatcaggac aaacccgatg ccgatttgtt tgaaggtgcg atgaagggta
    13561 tggtggccgg tttggatccg cattccgaat atatggataa aaaaggttat gccgagataa
    13621 aggagtccac cagcggcgaa tttggcggct tggggatgga aatcgggcag gaagacggat
    13681 ttgtcaaagt ggtttcgccg attgaggaca cgcctgcgga acgggcgggg gtgaaaagcg
    13741 gcgatttcat tgtgaaaatc gataatgttt cgacacgcgg catgacggtc agcgaagcgg
    13801 tgaagaaaat gcggggcaag ccgggtacga agattacttt gacgctgtcg cgcaaaaatg
    13861 ccgacaagcc gatagtcgtc aacctgaccc gtgccattat taaagtgaaa agcgtccgcc
    13921 atcacctgat cgaacccgat tacggctata tccgcgtgtc gcagttccaa gagaagacgg
    13981 tcgaaagcgt caataccgcc gcaaaagagc tgctaaagga aaataaagga aaaccgctca
    14041 aggggctggt gttggatttg cgcgacgacc ccggcgggct tttgactggc gcggtcggcg
    14101 tgtcggcggc atttctgccg tctgaagcag tcgtcgtcag caccaaggga cgcgacggca
    14161 aagaccgcat ggtactgaaa gccattcctg aagattatgt gtacgggatg ggcggcgatt
    14221 cgttggcggg cattcctgcc gagttgaaaa ccataccgat gacggtattg gtcaattccg
    14281 gttcggcttc cgcgtcggag attgtcgcag gtgcattgca ggatcataaa cgcgcggtca
    14341 tcgtcggtac gcagagcttc ggcaaaggtt cggttcagac tttgattcct ttgtccaacg
    14401 gcagcgcggt caagctgaca acggcactgt attatacgcc gaacgaccgt tctattcagg
    14461 cgcaggggat tgttcccgat gtcgaagtaa aagataagga acgcattttt gaaagccgcg
    14521 aggcggattt ggtcggacac atcggcaatc ctttgggcgg cgaggatgtg aacagtgaaa
    14581 cccttgccgt gccgcttgaa aaagatgcgg ataagcccgc tgtaaaagaa aaaggtaaaa
    14641 agaaaaagga cgaggatttg tcttcaaggc ggattcccaa ccctgccaaa gacgaccagt
    14701 tgcggaaagc tttggattta gtcaagtcgc ccgagcagtg gcagaagtct ttggggctgg
    14761 cggcgaaaaa gccggtttca aataaagata agaaagataa aaaagataag aagtaggttt
    14821 tgacgatgcc gtctgaaagg atttcagacg gcatattatg tttgaaagga caggttatga
    14881 gcgatttttt accggaattt gaaccgtgcg g
//
LOCUS       DAWGNT010000034        14689 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.034, whole genome shotgun sequence.
ACCESSION   DAWGNT010000034 DAWGNT010000000
VERSION     DAWGNT010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14689
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.034"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..1337)
                     /locus_tag="WHR98_000760"
     CDS             complement(<1..1337)
                     /locus_tag="WHR98_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase/DUF3482 domain-containing protein"
                     /protein_id="HEZ2307464.1"
                     /translation="MNKQPLSLAVVGHTNTGKTSLLRTLLRDSGFGEVKNAPSTTRHV
                     EEAAISDGADTLVFLYDTPGLEDAGGVLEWLENHTDNRSDGIERLQQFLGSHGAHHDF
                     NQEAKVLRQVLQSDMAMYVIDAREPVLDKYRDELTILSWCAKPVMPVFNFTGGQPPES
                     WTTMLARRNLHVFAGFDTVAFDFEGELRLWENLATMLPERSTLDRLTAMRRREWQRLD
                     GEARREIADFLIDAAAFRQEVDENEDTATVLQTMQAEIRQLERQMQQRLFALYRFYHS
                     EIDGGDWMPQAFRQDPFDSELLKQYGIRTGTGAATGALIGLGLDIATLGGSLGLGTAI
                     GGFLGGILPNTRTISDKLAGRQTLHTDPETLTLLAARALDLLHVLQTRGHAAQSDIEL
                     HSRKAPWDAARLPPELNKARSHWKWSSLNTHRPETSRAERAGYVEKLQIRLSG"
     gene            complement(1411..2751)
                     /locus_tag="WHR98_000761"
     CDS             complement(1411..2751)
                     /locus_tag="WHR98_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2868 domain-containing protein"
                     /protein_id="HEZ2307465.1"
                     /translation="MLNPSRKLVELVRILDEGGFIFSGDPVQATEALRRVDGSTEEKI
                     IRRAEMIDRNRMLRDTLERVRAGSFWLWVAAATFAFFTGFSGTYLLMDNQGLNFFLVL
                     AGVLGMNTLMLAVWLAMLFLRVKVGRFFSSPATWFRGKDPVNQAVLRLYADEWRQPSV
                     RWKIGATSHSLWLCTLLGMLVSVLLLLLVRQYTFNWESTLLSNAASVRLVEMLAWLPS
                     KLGFPVPDARAVVEGRLNGNIADAQAWSGLLVGSIACYGILPRFLAWVVCKILLKTSK
                     NGLDLEKPYYQAVIRRWQNKITDADTRRETVSAVSPKIVLNDAPKWAVMLETEWQDGE
                     WFEGRLAQEWLDKGVATNREQVAALETELKQKPAQLLIGVRAQTVPDRGVLRQIVRLS
                     EAAQGGAVVQLLAEQGLSDDLSEKLEHWRNALAECGAAWLEPDRAAQEGRLKDQ"
     gene            2894..3520
                     /locus_tag="WHR98_000762"
     CDS             2894..3520
                     /locus_tag="WHR98_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HEZ2307466.1"
                     /translation="MYTGERFNTYSHLSGLILAAAGLALMLLKTIGHGDGYRIFSVSV
                     YGISLLLLYLSSSLYHGIAAGKLKSILKKTDHCMIYVLIAGSYTPFALISLRNGPGWT
                     VFSLSWLLAAAGIAQELTIGRKSEKRLLSIVIYVVMGWMVLAVMKSLTASLPSAGLAW
                     LAAGGMLYSVGIYWFVNDEKIRHGHGIWHLFVLGGSITQFVSVYGYVI"
     gene            complement(3584..5002)
                     /locus_tag="WHR98_000763"
     CDS             complement(3584..5002)
                     /locus_tag="WHR98_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEZ2307467.1"
                     /translation="MENILSVLVGTVNRFLWDYLLIYALLGIGLFFTLYLGAPQITKL
                     GAGFKSVFGGLFAKGNKDDKSLSQFQALAVAISAQIGTGNVAGVSTAITAGGPGAIFW
                     MWLSAVLGMSTIFAEALLAQKYRVVSHGKYIGGPAFYITHGLTPKIGRGAARFLSGFF
                     SIALIVALGFIGNATQANSIASAVTIAFDVPSLAVGIVLAVLAGMVVIGGVNRIANIA
                     QFVVPFMAVVYILCAVVILFEFSDHIVPMFNHIFTAAFNPEAVLGGAAGIGMREAIRF
                     GVARGLFSNEAGMGSTPHAHATADVKHPVQQGMAAFVGVFIDTILVCTATALIILLTD
                     ANLSGEQGAAVTQFAFNKAFPGFGSQLLAVCLTFFALTTIIGWYYFGESNIRFLFRGR
                     HLGIYRALVLLAIVLGTLGKVDLVWSLSDMFNGFMVIPNLIALFLLRKEIRAIYDDYL
                     AQKKAGRDLSYPYEFHEFHDKG"
     gene            5329..6057
                     /locus_tag="WHR98_000764"
     CDS             5329..6057
                     /locus_tag="WHR98_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004285004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEZ2307468.1"
                     /translation="MAGHSKWANIQHKKARQDAKRGKIFTRLIKEITVAARMGGGDPG
                     ANPRLRLALEKAAENNMPKDNVQRAIDKGTGNLEGVEYIELRYEGYGIGGAALMVDCL
                     TDNKTRTVADVRHAFTKNGGNLGTDGCVAFNFVHQGYLVFEPGVDEDALMEAALEAGA
                     EDVVTNDDGSIEVITAPNDWAGVKSALEAAGYKSVDGDVTMRAQNETELSGDDAVKMQ
                     KLIDALEDLDDVQDVYTSAVLNLD"
     gene            complement(6116..6604)
                     /locus_tag="WHR98_000765"
     CDS             complement(6116..6604)
                     /locus_tag="WHR98_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HEZ2307469.1"
                     /translation="MTPLFRKAVWLLFAVSVCAFAGSLAAQYVLGMEPCVLCISQRLC
                     VLATALCAAIVLMCRPRRKAGGLFGAVFISIPAVTGISVAAYQLWLQSLPPGTAPSCG
                     APWTFRLKGWSLFDWFEPVVRGFGNCAEPDYLLGIALPVWSVAYFLAVVLTVWWAWAR
                     AK"
     gene            complement(7294..7758)
                     /locus_tag="WHR98_000766"
     CDS             complement(7294..7758)
                     /locus_tag="WHR98_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEZ2307470.1"
                     /translation="MKELDKIDFRILKILQKNARIPMTELAEKVGLSTTPVTERVRRL
                     EREHYISGYHAHLNPHLLGKPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVS
                     GEYDYLIKVRLPDMSAYRDMLGNILLQLPAASESRSYVVMEEVKENPVLDLD"
     gene            7983..9041
                     /gene="alr"
                     /locus_tag="WHR98_000767"
     CDS             7983..9041
                     /gene="alr"
                     /locus_tag="WHR98_000767"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEZ2307471.1"
                     /translation="MRPLNVQIRLGNLRHNYRILKEMHGGKLLAVVKADAYGHGAVRC
                     AFALADLADGFAVATIDEGIKLRESGITHPIVLLEGVFEASEYEAVEQYSLWPAVGNQ
                     WQLEALLSRHWKKPVKVWLKMDSGMHRTGFFPHDYASAYAALKQSEYVDSIVKFSHFS
                     CADEPESGMTEIQMEAFDLGTEGLEGEESLANSAAILNVPEARRDWGRAGLALYGISP
                     FGGGDDRLKPVMRLSTRIFGERVLQPHSPIGYGATFYTSKSTRVGLIACGYADGYPRR
                     APSNSPVAVDGKLTRVIGRVSMDMMTIELDASQEGLGHEVELWGDTVNINTVAEAAGT
                     IPYELMCNIKRAKFTYIE"
     gene            complement(9583..10938)
                     /locus_tag="WHR98_000768"
     CDS             complement(9583..10938)
                     /locus_tag="WHR98_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HEZ2307472.1"
                     /translation="MSIQSSEILETVKMVADQNFDVRTITIGIDLHDCISTDIDVLNQ
                     NIYNKITTVGKDLVATAKYLSAKYGVPIVNQRISVTPIAQIAAATHADSYVSVAQTLD
                     KAAKAIGVSFIGGFSALVQKGMSPSDEVLIRSIPEAMKTTDIVCSSINIGSTRAGINM
                     DAVKLAGETIKRTAEITPEGFGCAKIVVFCNAVEDNPFMAGAFHGSGEADAVINVGVS
                     GPGVVKAALENSDATTLTEVAEVVKKTAFKITRVGELIGCEASKMLNIPFGILDLSLA
                     PTPAVGDSVARILEEMGLSVCGTHGTTAALALLNDAVKKGGMMASSAVGGLSGAFIPV
                     SEDEGMIAAAEAGVLTLDKLEAMTAVCSVGLDMIAVPGDTPAHTISGIIADEAAIGMI
                     NSKTTAVRIIPVTGKTVGDSVEFGGLLGYAPVMPVKEGSCEVFVKRGGRIPAPVQSMK
                     N"
     gene            complement(10953..11225)
                     /locus_tag="WHR98_000769"
     CDS             complement(10953..11225)
                     /locus_tag="WHR98_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEZ2307473.1"
                     /translation="MNNSVITVIGKDRVGIVYDVSKILAENRINILNISQQLMDDFFT
                     MIILVDTSKCSKSRQEVLDLFAEESKKLALDIRMQNEEIFQAMHRI"
     gene            complement(11351..12088)
                     /locus_tag="WHR98_000770"
     CDS             complement(11351..12088)
                     /locus_tag="WHR98_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HEZ2307474.1"
                     /translation="MKKLSRIVFSTVLLGFSAALPAQTYSVYFNQNGKLTATMSSAAY
                     IRQYSVAEGIAHAQDFYYPSMKKYSEPYIVASTQIKSFVPTLQNGMLILWHFNGQKKM
                     AGGFSKGKPDGEWVNWYPNGKKSAVMPYKNGLSEGTGYRYYRNGGKESEIQFKQNKAN
                     GVWKQWYADGNIKTEMVMVNDEPAKILTWDESGRLLSELSIHHHKRNGVVLEWYEDGS
                     KKSEAVYQDDKLVRKTQWDKDGYLIEP"
     gene            complement(12369..13268)
                     /gene="prmB"
                     /locus_tag="WHR98_000771"
     CDS             complement(12369..13268)
                     /gene="prmB"
                     /locus_tag="WHR98_000771"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEZ2307475.1"
                     /translation="MFNQAAQELTTIRDILRFAVSRFNEAGLFFGHGTDNAHDEAAYL
                     ILHTLNLPLDMLAPYLDAKLLEAEKEEVLAVIERRAVEHIPAAYLTHQAWQGEFDFYV
                     DERVIIPRSFIYELLGNGLRPWIEYDELVHNALDLCTGSGCLAIQMAHHYPDAQIDAV
                     DVSLDALEVAGINVEDYGLEERIRLIHTDLFEGLEGTYDLIVSNPPYVDAESVELLPE
                     EYLHEPELALGSGADGLDATRQILLNAAKFLNPKGVLLVEIGHNRDVLEAAYPELPFT
                     WLETSGGDGFVFLLTREQLLGEE"
     gene            13413..14006
                     /locus_tag="WHR98_000772"
     CDS             13413..14006
                     /locus_tag="WHR98_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307476.1"
                     /translation="MVDGMGNLIGWEKTGLVVGKQWITAKDDKVSDVCNANGEMGVIG
                     LYEPFSHGALTIPGHPNCRCEVVSVSGGELGEFAEKKELRKAAMQYARDNFIGKSYVN
                     KNSGHELKVTWQGVKHAASKANQAELSIITKLDDLLRYAKYEGSYSDRKGRPDIIAAH
                     KYRAVTKVGNESLNVGVIVREFPDGHKHYDHFILKDE"
     gene            14118..14554
                     /locus_tag="WHR98_000773"
                     /pseudo
     CDS             14118..14554
                     /locus_tag="WHR98_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212381.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
BASE COUNT         3901 a         3811 c         3524 g         3453 t
ORIGIN      
        1 tttcccgaca ggcggatttg aagtttctcc acatatccgg cgcgttcggc gcggctggtt
       61 tcggggcggt gcgtattgag cgacgaccat ttccaatgac tgcgggcttt gttgagttcg
      121 ggcgggagtc tggcggcgtc ccacggggct ttgcggctgt gcagctcgat atccgactgt
      181 gccgcgtgtc cgcgcgtttg caggacgtgg agcaaatcga gggcgcgggc ggcgagcagg
      241 gtcagggttt cagggtcggt gtgcagggtt tggcggccag cgagtttgtc ggaaatggtg
      301 cgggtattgg gcaggatgcc gcccaaaaag ccgccgattg ccgtacccaa tccgagcgag
      361 ccgccgagtg tggcgatgtc cagccccaag ccgatgagcg cgccggttgc cgcgcccgtg
      421 ccggtgcgga tgccgtattg tttgagcaat tcgctgtcga acgggtcttg gcggaaggct
      481 tgcggcatcc agtcgccgcc gtcgatttcg ctgtggtaga aacggtagag ggcaaacagc
      541 cgctgctgca tctgccgttc gagttggcgt atttccgcct gcatggtttg cagcacggtg
      601 gcggtatcct cgttttcgtc cacttcctgc ctgaaggcgg cggcatcaat taaaaagtcg
      661 gcgatttcgc ggcgcgcttc gccgtccagc cgctgccatt cgcgccggcg catggctgtc
      721 aggcggtcaa gtgtgctgcg ttcgggcaac atggtggcga ggttttccca caggcgtagt
      781 tcgccttcaa aatcaaaggc gacggtgtcg aaccctgcga aaacgtgcag gtttctcctc
      841 gccagcatgg ttgtccacga ttcgggaggc tgtccgccgg taaagttgaa cacgggcata
      901 accggtttgg cacaccatga aaggatggtc aactcgtccc tgtatttgtc gaggacgggt
      961 tcgcgcgcgt cgatgacgta cattgccata tcgctttgca agacttgccg taagactttg
     1021 gcttcctgat tgaaatcatg gtgcgcgccg tggctgccga gaaactgttg cagccgttcg
     1081 atgccgtctg aacgattgtc cgtatggttt tccagccatt ccagcacgcc gcccgcgtct
     1141 tcgagtccgg gcgtgtcgta caggaaaacc agcgtgtctg cgccgtcgct gatggcggct
     1201 tcttcgacat gacgcgtggt cgatggggcg tttttgactt cgccgaaacc gctgtcgcgc
     1261 aaaagggtac gcaggagcga ggttttgccg gtgttggtgt gtccgacgac ggcgagggaa
     1321 aggggttgtt tgttcatgat gtttttgaag aatggatttt cagacggtct tttttcagaa
     1381 tggcggctta acagaacatt tcaagtgagt ttattggtct ttcaaacgcc cttcctgcgc
     1441 cgccctgtca ggctcaagcc acgccgcgcc gcattcggcc agcgcgttac gccaatgttc
     1501 cagcttttcc gaaaggtcgt ctgaaagccc ctgttccgcc aaaagctgca ccaccgcgcc
     1561 gccctgcgcc gcttccgaaa gtcggacgat ctgccgcaac acgccgcggt cgggcacagt
     1621 ttgggcgcgc acgccgataa gcagttgcgc cggtttctgc ttcagctctg tctccagcgc
     1681 ggcaacctgt tcccgattgg tggcaacgcc cttatccagc cattcctgcg ccagcctgcc
     1741 ctcgaaccat tcgccgtcct gccactcggt ctccagcatg accgcccatt tcggcgcatc
     1801 gttcaagacg attttcggcg aaacggcgga cacggtttcc cgacgcgtat ccgcatcggt
     1861 aattttgttc tgccagcggc ggatgaccgc ctgataatag ggtttttcca aatccaagcc
     1921 gtttttgctt gttttcaaaa ggattttaca caccacccaa gccaagaagc gcggcaggat
     1981 gccgtagcag gcgatactgc cgaccagcag ccccgaccaa gcctgcgcat cggcaatatt
     2041 gccgttcaga cgaccttcaa ctaccgcccg cgcatcgggg acagggaaac cgagtttcga
     2101 cggcagccat gccaacattt ccaccagccg taccgaagcg gcattgctca acagcgtgct
     2161 ttcccagttg aacgtatatt ggcgcaccaa aagcagcaac aataccgaca ccagcattcc
     2221 gagcagcgtg cagagccaca ggctgtgcga cgttgcgcct attttccaac gtaccgaagg
     2281 ttgccgccac tcgtccgcat acagccgcaa caccgcctga tttacagggt ctttgccccg
     2341 aaaccacgtc gccggactgc tgaaaaaacg ccccactttc acgcgcagga acaacattgc
     2401 caaccatact gccagcatca gcgtattcat gcccaacacg cccgccaaaa ccaaaaagaa
     2461 attcagaccc tgattgtcca ttagaagata agtacctgaa aaaccggtaa aaaacgcaaa
     2521 cgtcgccgcc gccacccaca accagaacga ccccgcacgc acacgttcca atgtgtcccg
     2581 cagcatacgg ttcctgtcga tcatctccgc ccgacggatg attttttcct ccgtactgcc
     2641 gtccacgcgg cgcaaagcct ccgtcgcctg tacgggatcg ccgctgaaaa taaaaccgcc
     2701 ttcgtccaaa atacggacca gctcaaccag ttttcgggat ggattcaaca taaaatgccg
     2761 tctgaaaata aaaaacagat tttaacacac gcattttcaa gaatattcac agtgtaggca
     2821 aagagtaaat cccacacaga ggcaaaagta tcggcgtaaa ctgactgcct ctactttccc
     2881 gaaagattgt gcgatgtata caggcgaacg cttcaatact tacagccatt tgagcggttt
     2941 gattctggcg gcggcaggtt tggcgctgat gctgctgaaa accataggac acggggacgg
     3001 ctaccgtatc ttcagcgtat cggtttacgg catcagcctt cttctgctct atttgagttc
     3061 ctcgctgtac cacggaattg cagccggaaa actgaaaagc attttgaaaa aaaccgacca
     3121 ctgcatgatt tatgtgctga ttgccggaag ctacacaccg tttgcactga tttctttgag
     3181 aaacgggccg ggctggacgg tattttcact gtcctggctg ctggcggctg caggaatcgc
     3241 acaagaactc accatcggac ggaaaagcga aaaacgtctg ctgtctattg tgatttatgt
     3301 cgtcatgggt tggatggtct tggcggtaat gaaatccctg acagcctcac tcccgtcggc
     3361 aggactggct tggctggcgg caggcggtat gctgtacagc gtcggcattt actggtttgt
     3421 aaacgatgaa aaaatccgac acgggcacgg aatctggcat ctgttcgtat tgggcggcag
     3481 catcacccaa tttgtcagcg tgtacggtta cgtaatctga atgccgtctg aaaagcaaaa
     3541 cctcccgatc ctgaagattg ggaggttttc tgtttgccgg acatcagccc ttgtcgtgga
     3601 actcgtggaa ttcatacgga taggacaaat cccgacccgc ttttttctgt gccaaataat
     3661 catcataaat ggcacggatt tccttacgca acaaaaacag ggctatcaag ttcgggataa
     3721 ccataaagcc gttgaacata tcggacaggc tccaaaccaa atcgactttg ccgagcgtac
     3781 ctaaaacgat ggcaagcaga accaatgcgc gatagatgcc caagtgtctt cccctgaaaa
     3841 gaaaacggat gttggactcg ccgaaataat accagccgat aatggtcgtc aaggcgaaaa
     3901 aggtcagaca cacggcaagc aattgcgaac cgaagcccgg aaatgccttg ttaaaggcaa
     3961 attgagtaac cgccgcgccc tgttcgcccg aaaggttggc atcggtcagc aggataatca
     4021 atgccgtagc cgtacatacc aaaatcgtat cgataaatac accgacaaat gccgccatac
     4081 cttgctgcac aggatgcttc acatccgcag tcgcgtgggc gtgcggagtc gaacccatac
     4141 ctgcttcgtt ggaaaacaga ccgcgcgcca cgccgaaacg tatcgcttcg cgcataccga
     4201 tacccgcagc accgcccaaa acggcttcgg gattgaaggc ggcggtaaag atgtggttga
     4261 acatcggcac aatatggtcg gaaaattcaa acaggataac gacggcgcac aaaatataaa
     4321 caaccgccat aaacggcacg acaaattggg caatattggc aatacggttc acgccgccaa
     4381 tcacaaccat gcccgcaagg acggcaagca caataccgac tgccaaagaa ggcacatcaa
     4441 atgcaatggt aacggcagaa gcgatggagt ttgcctgagt cgcattgccg ataaagccca
     4501 acgcgacaat cagcgcgatg gagaaaaagc ccgacaggaa acgcgccgcg cccctgccga
     4561 ttttcggggt cagaccgtgc gtaatataaa acgcggggcc gccgatgtat ttgccgtggc
     4621 tgacgacgcg gtatttctgc gccagcagtg cctccgcaaa aatcgtggac atccccaaaa
     4681 cggcagaaag ccacatccaa aaaatcgcgc ccggcccgcc tgcggtaatg gcggtcgaca
     4741 caccggcgac gttgcccgta ccgatttgcg cggatatagc aaccgccaac gcctgaaact
     4801 gcgataaaga cttatcgtct ttattgcctt tggcaaacaa gccgccaaat acggatttga
     4861 atcccgcgcc cagcttggta atctgcggcg caccgagata cagcgtaaaa aacaggccga
     4921 tacccaaaag cgcgtaaatc agcaggtagt cccaaaggaa ccgattgact gtacccacca
     4981 gaacagacaa tatattttcc ataaaataaa ccttatctta cgattaaaat gactgctttc
     5041 ccaaagacat tccaataagg aaacacggcg agcagaccgt atttgccgca acagatgcct
     5101 taaattgtca acaatcgggg agaagctgtg ccatcatacc gtaaaatatc gttaattaaa
     5161 acatttcttt atttttaagc ggaaagcgga ggaaatcgct ttcagacggc atcgacaacg
     5221 gcacggcata aaacaggata ttttgggtac ttgcaactta tgttaaaatg ccgaccgtaa
     5281 aaaatctgac aaaaacagat taattatttg aaataagaaa ggaaatttat ggcaggccat
     5341 agcaagtggg cgaatatcca gcataaaaaa gcccgtcagg atgccaaacg cggcaaaatc
     5401 ttcacccgtt taatcaaaga aatcaccgtt gcggcgcgta tgggcggcgg cgatcccggc
     5461 gcaaatccgc gcctgcgcct ggctttggaa aaagcagccg aaaacaatat gcccaaagac
     5521 aatgtgcaac gcgccatcga caaaggtacg ggcaacttgg aaggcgtgga atacatcgag
     5581 ttgcgctacg aaggctacgg catcggcggc gcggctttga tggtggactg cctgaccgac
     5641 aacaaaaccc gcaccgttgc ggacgtacgc cacgcgttta ccaaaaacgg cggcaacttg
     5701 ggtaccgacg gctgcgtggc gttcaacttc gttcatcaag gctatttggt gtttgaaccg
     5761 ggcgttgacg aagatgcgct gatggaagcg gctttggaag ccggtgcgga agacgtggtt
     5821 accaacgacg acggttccat cgaagtcatt accgcgccaa acgattgggc gggcgtaaaa
     5881 tccgctttgg aggcggcagg ttacaaatcc gttgacggcg acgttacgat gcgcgcccaa
     5941 aacgaaaccg aactctccgg cgacgatgcc gtcaaaatgc aaaaactgat tgacgcgctg
     6001 gaagacttag acgacgtgca agacgtttac acttccgccg tattgaattt ggactgatac
     6061 gcagcacagc agacatacaa taaaatgccg tctgaacctt tcagacggca ttgatttatt
     6121 tagcccttgc ccacgcccac caaaccgtca ggacaaccgc cagaaaatac gccacgctcc
     6181 aaacaggcaa agcaattccc agcagataat ccggttcagc acaatttccg aacccgcgca
     6241 cgacaggctc gaaccaatca aacaaagacc agcccttcaa gcggaacgtc cacggcgcac
     6301 cgcacgaagg agccgtaccc ggcggcagcg actgcaacca caactgatat gccgcaacag
     6361 aaatacccgt aacggccgga atgctgataa agacagcacc gaacaaaccg cctgcctttc
     6421 ttcttggtct gcacatcagg acaattgccg cacacaatgc ggttgccaag acgcacaacc
     6481 gctggctgat acacaaaacg caaggctcca tacccaaaac atactgtgcc gccaaagagc
     6541 cggcaaatgc acagaccgaa acggcaaaca gcagccaaac ggcttttcta aataacgggg
     6601 tcattttctc aacacaccaa tcaaaatacc gatatgccga ttttgctgga tatatcccga
     6661 gatggcaagg gacaaaacgg cgatttgccc gcacaatgcc cacaaaaaaa tacatccgga
     6721 ggatttgaat ttcagcaaat ttagcgaatc aaaagtttat ttcaatgaaa tcatatgatt
     6781 tttttgaata agcggattga tgggtttttg aaggaatttg ttaccggata gccatcgggc
     6841 aagttttttg caaaatttga atcggtcggg taaattttca aaaaataatt gacagcggat
     6901 aagaaacggc ggataattcc cgccgtcgag ttgcttgatg cagcttgatt tttctcctct
     6961 atttctcctt tgtagacttg gcacacattc aaccggatgt gtgcattttt ttatctccgc
     7021 tttttttgaa atttaattac ttttattgtt tgaaattcca ttctttaaga aatttaacaa
     7081 gaaaaagctt gctttttatg actgatagcg gcataatttg acccgttagc tggttcgagt
     7141 agtcagttaa tagtttctcc tctatttctc ctttgtagac ttggcacaca ttctatcgaa
     7201 tgtgtgcatt tttttatcta aaacgacaac atgccatacg ttttgttgtt atatttcatt
     7261 caggtgtcaa actgcatagc cagcctgaaa tattcaatcc aaatccaaaa ccggattttc
     7321 tttgacctcc tccatcacaa cataactcct actctccgaa gcggcaggca gttgcaatag
     7381 gatattgcct agcatatccc gataggcaga catatcgggc aaacgtactt taatcagata
     7441 atcgtattcg cccgacacca agtggcattc cataatttgc ggaattttca gcacttcttt
     7501 tttgaaatct tcgaaaatat tgcccgattt ggattgcagc ttcagctcga caaaaaccaa
     7561 taaaggtttg cccaacagat ggggattgag atgggcgtga tagccggaaa tataatgctc
     7621 ccgctccaaa cggcgtaccc gttcggtaac tggagtagtg gacaatccta ctttctcggc
     7681 aagctccgtc atcggaatac gggcattttt ctgcaggatc ttaaggatac ggaaatcaat
     7741 cttatctaac tctttcattt gtctttacct tattgtttat tattgatttt aatggttggg
     7801 atgctgataa ggaaagacaa ttatatcagg aaaacgcaag cctcctttcc ctatggcaaa
     7861 cccaacccca cctccgaaga gtaaggttct ttaatatttt aaaagccttg ccgttggatt
     7921 ataatccccc aaccgatttc ttaattttgc taataaacac ttgtttggta aggaatgaat
     7981 ttatgcgtcc tttgaacgtg cagatcaggt tgggcaacct taggcacaat tatcggattt
     8041 tgaaggaaat gcacggaggc aagctgttgg cggtagtgaa ggccgacgca tacggacacg
     8101 gtgcggtcag atgtgctttc gcgctggcag acttggcaga tggtttcgcc gtggccacaa
     8161 tcgatgaggg aatcaagctg cgggagagcg gcattaccca tccgattgtc cttttggaag
     8221 gcgtatttga agcatcagag tacgaagcgg tcgaacaata ctcgctctgg ccggcagtcg
     8281 gaaaccaatg gcaacttgag gctttgcttt cccgccattg gaaaaaacct gtcaaggtct
     8341 ggttgaaaat ggattcggga atgcaccgta ccggattttt ccctcatgat tacgcttcgg
     8401 catatgcggc attgaagcag tcggaatatg tggacagtat tgtcaagttt tcgcattttt
     8461 cctgtgcgga cgaacccgaa agcggtatga cggaaataca gatggaagca ttcgatttgg
     8521 gtacggaagg gctggaaggc gaagaaagcc ttgccaattc ggcggctatt ttgaatgttc
     8581 ccgaagcacg cagggattgg gggcgcgcgg gcttggcgtt atacggcatt tccccgttcg
     8641 gaggaggcga tgacaggctg aagcccgtga tgaggctttc cacccgtatt ttcggcgaac
     8701 gcgttttaca gccgcactcc cctatcggtt atggcgcaac attttatacc agcaaatcta
     8761 cgcgcgtcgg cctgattgcc tgcggttatg cggacggtta tccgcgccgc gccccaagca
     8821 attcccccgt cgccgtcgac ggtaaattga cccgggtcat cggcagggtc tctatggata
     8881 tgatgaccat cgagctggac gcttcgcaag aaggtttggg acacgaggtc gaactgtggg
     8941 gcgatacggt taatatcaat accgttgccg aagcggccgg aaccatccct tacgaattga
     9001 tgtgcaatat caaacgtgca aaattcactt atatcgagta accgggttca aacgaaaatg
     9061 ccgtctgaag cctttcagac ggcataaatg cgttttgaca aaatcagtaa aagacattgc
     9121 caaatagaaa atactgataa tgcccacaat ctgaaacccc atccttcccg caaaaacgga
     9181 aaatcaaaat cagaaaccta aaatttcgtc attcccgcgc aggcgggaat ccggtttttt
     9241 gagtttccgt catttctgat aaattctcgt cgtttttcat ttctagattc ccgcctgcgc
     9301 gggaatgaca aaattaaagt ttcagaattt atttgaacaa caaactagat tcccactttc
     9361 gcggggatga cggcggatag gttttgttgt ttcggataaa ttcctgttgt tttttggttt
     9421 ccagattccc acctttaaaa gaatgacgta agaaagcaga aataaggaca cagggatttt
     9481 ttaaatttgc aatattcttt tctaaagaca ttttacccga tgcctataaa caaaaatgcc
     9541 gtctgaagcc tttcagacgg catttcccca tcaaaaccgc aatcagtttt tcatcgattg
     9601 aaccggagcc gggattctgc cgccccgttt gacgaacact tcgcacgaac cttctttgac
     9661 cggcattaca ggcgcgtagc ccaacaagcc gccgaactcg acgctgtcgc cgacggtttt
     9721 tccggttacc ggaataatgc gcacggcagt ggttttgctg ttaatcatac cgatggcggc
     9781 ttcgtcggca atgatgccag aaatggtgtg cgcgggtgtg tcgccgggaa cggcaatcat
     9841 atccaagccg accgaacaaa cggcggtcat cgcttcgagt ttatccaacg tcagcacgcc
     9901 tgcttcggcg gcggcaatca taccttcgtc ttcggaaacg gggataaacg cgccactcaa
     9961 accgccaacc gcgctcgaag ccatcatgcc gccctttttc acggcatcgt tcagcaatgc
    10021 caaagctgct gttgtgccgt gcgtaccgca gacgctcaaa cccatttctt caagaatgcg
    10081 cgccaccgag tcgccgacgg caggggtcgg tgccagcgac aagtcgagaa taccaaacgg
    10141 gatattcagc atttttgagg cttcgcagcc gatgagttcg cccacgcggg taattttgaa
    10201 ggcggttttc ttcacaactt cggcaacttc ggtcaatgtc gtcgcatccg aattttccaa
    10261 cgcggctttg accacgcccg gaccggatac gccgacatta atcacagcat ccgcttcgcc
    10321 cgatccgtga aacgcacccg ccataaacgg attgtcttcc accgcattac agaacacgac
    10381 gattttcgcg caaccgaaac cttcaggcgt gatttcagcc gtgcgtttga tggtttcgcc
    10441 tgccagcttg accgcatcca tattgatacc ggcacgcgtg ctgccgatat tgatggagct
    10501 gcacacgatg tcggtggtct tcatcgcttc gggaatggaa cggattaaca cctcatctga
    10561 aggcgacatg cctttttgca ccaacgcgga aaagccgccg ataaaggaca cgccgatggc
    10621 tttggcagcc ttatccaaag tttgcgccac gctgacatag gaatcggcat gggtagccgc
    10681 cgcgatttgg gcaatcggcg tgacagaaat gcgctgattc acaatcggca cgccgtattt
    10741 ggcagacaga tattttgccg tcgccaccaa gtctttgccg accgtggtga ttttgttgta
    10801 aatgttttgg tttaacacgt cgatgtcggt gctgatgcag tcgtgcaaat caatgccgat
    10861 ggtaatggtg cggacatcga aattctggtc ggcaaccatt ttgacggttt ctaaaatttc
    10921 gctggattgg atactcatca cattcctccg gctcaaatgc ggtgcatcgc ttggaagatt
    10981 tcttcgtttt gcatacggat gtcgagcgcg agttttttgc tctcttccgc aaacaaatcc
    11041 aaaacctcct gccgcgattt gctgcatttt gaagtgtcca ccaagataat catggtaaaa
    11101 aaatcatcca tcagctgttg gctgatattg aggatgttga ttcggttttc cgccaaaatt
    11161 ttggaaacat cgtacacgat gccgacgcgg tctttaccga tgacggtgat gactgaattg
    11221 ttcacaggct tactccttgc agatatccgt taaagtccga aattatacca ccgttggatt
    11281 ttgaagaaat attgtcaaca atatatacat acaaaatgcc gtctgaaact atttcagaca
    11341 gcatcaagat tcagggttcg attaaataac catccttatc ccactgggtt ttcctgacca
    11401 acttatcatc ctgataaaca gcttcactct ttttagaacc atcttcatac cactctaaga
    11461 ctactccatt acgtttatga tgatggatag acagttccga gagtaatcga ccgctttcat
    11521 cccatgtcag aattttggca ggctcatcat tgaccataac catttccgtt ttgatattgc
    11581 cgtcggcata ccattgcttc catacgccgt ttgccttatt ctgtttaaac tggatttcgc
    11641 tttccttgcc gccgttacgg taatagcggt accccgtacc ttcactcaaa ccatttttat
    11701 aaggcataac ggcagatttt ttaccgttcg gataccagtt gacccactcc ccgtccggct
    11761 tacccttgct gaagcccccc gccatttttt tctgaccatt aaaatgccac aaaatcaaca
    11821 taccgttttg cagggtaggc acaaaagatt tgatttgcgt tgaagcaacg atataaggtt
    11881 cggaatattt cttcatcgac ggataataaa aatcctgcgc gtgcgcaata ccctccgcca
    11941 cactatattg cctgatataa gcggcagaag acatcgtcgc cgtcagtttc ccgttctgat
    12001 taaaataaac agaataggtc tgcgccggca aagcggccga aaaacccaac aggacagttg
    12061 aaaatacaat ccgagataat tttttcattg caatagcgat ataaaaacaa ggctgtgttt
    12121 tagtaatctt ttgatttcaa ttatttgcaa gggaaaagac aattattttc cggttaggaa
    12181 taaacctatt ctattgaata tattgaagcc aagtacgcct atcaacacta tattaaaaca
    12241 ctgccaaaaa caattaactt ataaacaata tggtaaggat ttctctgcca agcatcaaac
    12301 ccgagacaac gtatcgtaaa aatgccgtct gaaaacaaat cgtcttcaga cggcatttcc
    12361 ccttcaactc actcttcacc caataactgc tcgcgcgtca agaggaaaac aaaaccgtcg
    12421 cccccgctgg tttccaacca agtaaaaggc aactccggat acgctgcttc caatacatcc
    12481 ctgttatgcc cgatttccac cagcaataca cctttgggat tcagaaactt tgccgcattc
    12541 agaagaatct gcctggtggc atccaacccg tccgccccgc tgcccaatgc caattccggt
    12601 tcgtgcaaat actcttcagg caataactca accgattccg catccacata aggcggattg
    12661 gaaacaatca aatcataagt gccttccaat ccttcaaaca aatccgtatg aataagccgg
    12721 atgcgttctt ccaaaccata atcttcgaca ttaatccctg ccacttccaa agcatccaag
    12781 ctcacatcaa ccgcatcaat ttgggcatca ggataatgat gcgccatctg aatggcaagg
    12841 caaccgcttc cggtgcaaag atccaaagca ttatgcacca gctcatcgta ttctatccaa
    12901 ggacgaagtc cgttacccaa caattcataa ataaaagaac gaggtatgat tacgcgctca
    12961 tccacataga aatcaaactc tccctgccat gcctggtgtg tcaaataagc ggctggaatg
    13021 tgttcgacag cacgacgctc aataaccgcc agcacttcct ctttttcagc ttccaagagt
    13081 tttgcatcaa gatatggggc aagcatatcc aaaggcaaat tcaaagtatg cagaatcaaa
    13141 taagccgctt catcatgcgc attatctgtt ccatgaccaa aaaagagccc tgcctcatta
    13201 aaacggctga ctgcaaaacg taaaatatcg cggatagtcg tcaattcttg tgctgcctga
    13261 ttaaacataa tatgaaccat tctgcgtata gatactttta attataacag aaacaacaag
    13321 caaacctttt catatcgcca aataaccacc caatctaccc atacaactac ataaatgccc
    13381 gcgcgaaaac catcgcccga acggaaacga caatggtcga cggcatgggc aatctgattg
    13441 gctgggaaaa aacggggctt gttgtcggta agcagtggat aaccgcaaaa gacgacaagg
    13501 tgtccgatgt ctgcaatgcc aacggcgaga tgggcgtaat cgggctttac gagcctttct
    13561 cacacggcgc attgacgata cccggtcatc cgaactgccg atgcgaggtt gtttccgtat
    13621 cgggtggcga attgggagaa tttgccgaaa aaaaggagct tcgtaaagcg gctatgcagt
    13681 atgcgcggga taactttatc ggcaaaagct atgtcaataa aaacagcggg catgaactga
    13741 aggtaacttg gcaaggtgtg aaacacgctg cgtcaaaggc aaatcaggcg gaattatcca
    13801 tcataacaaa acttgatgac ttattgcgct acgcaaaata tgagggttct tattcggata
    13861 ggaaaggtcg tcctgatatt attgcagcac ataagtatcg tgccgttacc aaggttggga
    13921 atgagtcttt aaatgtcggc gtgattgtaa gggagtttcc agacggccat aaacattacg
    13981 accatttcat cttgaaggat gagtaaagcc cttttgcagt gtagctctgg agcggatacc
    14041 gttaaggcaa gtacgcttcc agccttacaa aagggcttta aattcagcat accatttata
    14101 caaacagaaa taaaccaatg acgaagttat acgcagaaat cgccaagatg gaggccagga
    14161 cgacggcacg gtcaaagttt ggggctatgc ctcaagcgag gcggtcgatt ccgacggcga
    14221 agtcatcgcg gcggcagcta tgaaggcggc gattcccgat tatatgaagt ttggcgcgga
    14281 gcgcgagatg cacggctcaa acgctgcggg aacggcaatt gaaatcaacg tggaagatga
    14341 cggcagaacc tttttcgtgg cgcatatcgt cgatcccgtt gccgtgacga aggtcaaaac
    14401 aggcgtttac aagggctttt ccatcggcgg cagcgttacc gcccacgatg agttgaacaa
    14461 gtcgcaaatc acgggtttga agctgacgga aatcagcttg gttgaccgac ccgccaatcc
    14521 cgatgcggtg tttacctgct ttaaggcgga caaaggtgcg gaagcggtaa acaacgatac
    14581 agaacataat gctacatatt ttaaccattt cccttccaaa caaaaaagca ccggcggcag
    14641 ccgatgcccc ttcccttaca ggttccccta ttttttagct gcgggcaga
//
LOCUS       DAWGNT010000035        14368 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.035, whole genome shotgun sequence.
ACCESSION   DAWGNT010000035 DAWGNT010000000
VERSION     DAWGNT010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 14368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14368
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.035"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            168..2338
                     /locus_tag="WHR98_000774"
                     /pseudo
     CDS             168..2338
                     /locus_tag="WHR98_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229588.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
     gene            2328..5102
                     /locus_tag="WHR98_000775"
     CDS             2328..5102
                     /locus_tag="WHR98_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEZ2307477.1"
                     /translation="MANNKTLFDWVEDRKSTLEEIEQTDFFALPEFVERNLKYPFFEW
                     QKSALENFVIFDRASKLKDFPDIKNRPTHLLFNMATGAGKTMMMAALILYYFEKGYRH
                     FLFFVNQNNIVDKTENNFIDPAHSKFLFTEKILQGDQVIPIHKVETFSPHSDGIEIKF
                     TSIQKLYNDIHTERENQTTLADLHELNLVMLGDEAHHLNAQTKGKKQGELDLEVELKA
                     NAGDAEFERKGWEHMVLELLLNKNGNPGQNVLLEFTATPPEKADVQQKYADKIITKFG
                     LKEFLQKGYTKEINLVSSTLSKKERVLHALLFAWYRHQIALKYGIANFKPVMLFRSKT
                     VDESKADYLAFLNWVENVQADDFSFLKTFSMSLNDSDNANEQGKTRTEQALKFMQENG
                     FEFAHLANWIKQNYQKHNIIITNSETNKSKTEKTDSETEKLLNNLEAVDNPIRAIFTV
                     GRLTEGWDVLNLFDIVRLYEGQNGGGSNKKSCKTANTTVSEKQLIGRGVRYFPFSFED
                     KQPNKRKFDNDMQHELRILEELFYYTHDEQSRYITELKNELRKDGYLPEKDDDKVLAT
                     FKLKSEFADNENFKNLLIWANKKIPNPNAKSNNADSLKANPQTLSFQIHGNQLLQETQ
                     FTADKNDEKVKQLGIQNNFSQTIKMSEMERHIFNKALHIKGKNSQSLFHFNRLQSKLN
                     IQNRNELQNNLLKDWQIEFLGLEQDKQVRPDDKLAGCLKILEMVEKHLNESDKPFIGT
                     KEFTPKTLWEIFGTPKQKWVKKDDIKTAIAMQNDWYVMDNFAGTGLEEALIQFISARL
                     GDLKSQYDIHLIRNEEVFKLNNFANGEGFMPDFILLLKDKQKSSSNGVNDFLHYQIFI
                     EPKGEHLVETDGWKEEFLEAITVEYGMDKILQKDTPHYRLIGLPFFTDHQKNGQFTES
                     FPLGVASLKK"
     gene            complement(5243..6415)
                     /locus_tag="WHR98_000776"
     CDS             complement(5243..6415)
                     /locus_tag="WHR98_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-hydroxy-acid oxidizing protein"
                     /protein_id="HEZ2307478.1"
                     /translation="MKRDLSKMTCIEDLRRVAKRKMPRMFYDYIDSGSWTETTYRENT
                     SDFKDIRFRQKVLVNMEGRSLETKMIGQDVKMPVAIAPTGFTGMAHADGEILAARAAE
                     KFGIPFTLSTMSICSIEDVAENTSAPFWFQLYVMRDREFMENLIKRAKDAKCSALVLT
                     ADLQVLGQRHKDIKNGLSAPPKPTIANLINLATKPEWCMKMLNTERRTFRNIVGHAKN
                     VGDLSSLSSWTSEQFDPRLSWDDVARIKDLWGGKLIIKGIMEPEDAEKAAKSGADALI
                     VSNHGGRQLDDTVSAIKALPDIVSAVGSDIEVWMDSGIRSGQDILKAWALGAKGTMIG
                     RAFLYGLGAYGEEGVTRALEILYKEMDISMAFTGHRDIQDVDASILRGKDWGRETV"
     gene            6765..7211
                     /gene="iscR"
                     /locus_tag="WHR98_000777"
     CDS             6765..7211
                     /gene="iscR"
                     /locus_tag="WHR98_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HEZ2307479.1"
                     /translation="MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQ
                     LFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAAEDRLDATQCGSKANCHHGA
                     PCLTHDLWENLNKTINDYLGSVTLQSIIEQKNNGDGSRVVQFTHIH"
     gene            7240..8454
                     /locus_tag="WHR98_000778"
     CDS             7240..8454
                     /locus_tag="WHR98_000778"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HEZ2307480.1"
                     /translation="MTVKTPVYLDYAATTTVDKRVAEKMIPYLTETFGNPASNSHAFG
                     WEAEEAVEKARADIAALINADPKEIVFTSGATESDNLAIKGAANFYKTKGKHLITVKT
                     EHKAVLDTMRELERQGFEVTYLGVQENGLVDLDVLKAAIREDTILVSVMWVNNEIGVV
                     QDIPAIGEICRERKIVFHVDAAQACGKVPVDVEAAKIDLLSMSAHKVYGPKGIGALYV
                     RRKPRVRLEAQMHGGGHERGFRSGTLPTHQIVGMGEAFRIAKEELEQDMAHYRKLRDI
                     FLKGIEGIEEVYINGDLEHRAPNNLNVSFNFVEGESLIMAVKELAVSSGSACTSASLE
                     PSYVLRALGRNDELAHSSLRITFGRMTTEEEVQFAAELIKSKIGKLRELSPLWEMFKD
                     GIDLNSIEWAAH"
     gene            8600..9445
                     /locus_tag="WHR98_000779"
     CDS             8600..9445
                     /locus_tag="WHR98_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEZ2307481.1"
                     /translation="MKIANALIHNTVRIECLSADGQSISTGTAFLFLFDFDKTGVIPV
                     LVTNKHVVFVESAKKIAITLTKDENGSPNHKENITFTIEDFIQNCLPHPDENIDLCIA
                     PVGHFFNQLINHNFSPFIKGIRESDIMQTEEMDQLSAFEEVFMIGYPNGLWDSKNNLP
                     IFRTGITATHPAIDFEGKKEFMIDVACFPGSSGSPVFKYIPAGLRKIENDGFAITADE
                     TFKLMGILYAGPQQTISGEIYITTVNKPISVSSIPINLGFVIKAEKLLDFKPILKNFL
                     EKNRE"
     gene            9786..10172
                     /gene="iscU"
                     /locus_tag="WHR98_000780"
     CDS             9786..10172
                     /gene="iscU"
                     /locus_tag="WHR98_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HEZ2307482.1"
                     /translation="MAYSDKVIDHYENPRNVGTFDKNDESVGTGMVGAPACGDVMRLQ
                     IKVNDEGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLDDALAIKNSEIAEELELPPV
                     KIHCSILAEDAVKAAVADYRKRQENR"
     gene            10259..10579
                     /gene="iscA"
                     /locus_tag="WHR98_000781"
     CDS             10259..10579
                     /gene="iscA"
                     /locus_tag="WHR98_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HEZ2307483.1"
                     /translation="MITLTENAAKHINDYLAKRGKGLGVRLGVKTSGCSGMAYNLEFV
                     DEADGDDLIFEGHGARIYIDPKSLVYLDGTQVDYTKEGLQEGFKFENPNVKDSCGCGE
                     SFHV"
     gene            complement(10539..10760)
                     /locus_tag="WHR98_000782"
     CDS             complement(10539..10760)
                     /locus_tag="WHR98_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome-rescue factor A"
                     /protein_id="HEZ2307484.1"
                     /translation="MGGKVQHNKGKIRDNALKALVKSDLFRHKVERKRKGKGSYNRQE
                     AKKWRDGFDTVPPFLCLKHGSFRRSRRSL"
     gene            10842..11342
                     /gene="hscB"
                     /locus_tag="WHR98_000783"
     CDS             10842..11342
                     /gene="hscB"
                     /locus_tag="WHR98_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HEZ2307485.1"
                     /translation="MSQYFTLFRIEPAFDIDTENLEQTYRALAARFHPDKFASASAFE
                     QKQAVMMSSTINDAYRTLKNPIDRAAYLLKTSGIDADAPEHTSFASEFLMQQMEWRET
                     LMEARAGKDLESLKNLDNEIRDEQEKLFCGLKQSFARQDYDTAAQQVRQGRFLDKLRN
                     EISSAL"
     gene            11440..14190
                     /gene="gyrA"
                     /locus_tag="WHR98_000784"
     CDS             11440..14190
                     /gene="gyrA"
                     /locus_tag="WHR98_000784"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEZ2307486.1"
                     /translation="MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPD
                     VRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQ
                     NFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS
                     EHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELID
                     IIQAPDFPTGATIYGLSGVREGYKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQ
                     VNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELKRNENAEVVLNQLYKLTP
                     LQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRREVVTRRTLFRLKKARHEGHIAEGK
                     AVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAA
                     NIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPER
                     ITQIIRDELEEIKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTT
                     DYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRN
                     SRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGI
                     KAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISD
                     GIEDETADSENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQV
                     LTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGG
                     VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVISNVTEPEV
                     EN"
BASE COUNT         4474 a         3431 c         3055 g         3408 t
ORIGIN      
        1 gcaaaattcc gacacactcg gacacccgcc ccgcttatcg caactttgcg aacgcccccg
       61 gaaacagcaa agacatcaaa ggattgattt tattagaatt tatttgcaaa gccatttgcc
      121 gttacacaag aatggcacat taaaatgact gatgaggatt tataacgatg aagacagaca
      181 ttcaaaccga attaacccaa gccctgctat cacacgaaaa agtatgggcg aacgaagaaa
      241 aaaccatttt agccaaaaac attctgttgg atttggtgga aaaaaccgac ccgaccatta
      301 tcggtttgtt attgaataat gatgagttaa aacgccattt ctttgtggaa gtgaatggtg
      361 ttttggtgtt taaattgcag gatttacgtt ttttcttgga caaacacagc gtcaataatt
      421 cctacacaaa atacgccaac cgcattggtt tgacggacgg caaccgcttt ttgaaagaca
      481 attcggatat tgtgttggat tttccgttta aagattgcgt attgaatggc ggacaaagca
      541 ccgaagaagg cgaagagatt tattttaaac gcagtaatag ccagccagcc agccagccag
      601 ccagccagcc agccaattat acactaaatt aacccgaaaa agacaagaaa tcttttttaa
      661 tcaaacgctt gcttttgatg aaatcgatcg gctttttgac gcaaaagcat tctcaaaatt
      721 ctctcgctat accgcagacg gcaaacaagc ggttggcgaa atcaaacgtc attcagacgg
      781 cacacccgcc gaaaatctca ttatcaaagg caataatctg atagccctac attcgcttgc
      841 caaacagttt aaaggcaaag tgaagttgat ttatattgat ccgccttatt attttgttaa
      901 aaagaaacaa caagatagtt ttggttataa cactaacttt aaattatcta cttggcttac
      961 atttatgaaa aatcgtttat caattgccaa agaattatta actgatgatg ggattattgt
     1021 tatttccatt gatgatgacg gaaatgctta tttaaagatt ttgttagatg aaatttttgg
     1081 atttgaaaat tttatcggaa atttacccac tattatgaat ttaaaaggta ataatgatga
     1141 atatgctttt gcaggcactc acgaatacac actagtcttt gctaaaaata aagataaatc
     1201 tactttttat gaatttccaa tagatgaaga taatttttta gagaaatggg aagaagatga
     1261 aattgggttt tataaaaaag gagctccaat gcgagcaaca ggaaccgaag ataaaagaga
     1321 agatagacct gaaatgttct atcctttttt ggtaaaaaat aacacagtta gtacaattac
     1381 agatgaagaa ttttctcaaa tctataataa agatttagaa gtattcaatg atgattttat
     1441 tcaaaaacta aaagagaaat acgaaaatct tggatacaat tttattttac ctattgctga
     1501 taaacaatgg gggcgttggc gttgggggta ttcaataaag aataaggcaa ggctgcagac
     1561 ggatattatt gttagccaat ctaaaaatgg aatttccttg tataaaaaac aaagacctga
     1621 attagatgat ttacctacaa aaaaacctaa aactattttt tataaacctg aatacagtag
     1681 tggtaatgga actgaacaga tgaaaaatct ttttggtgaa aaggcattta aaaatcctaa
     1741 accagaagaa cttatccaag attttattac catcacaacc aacgaatccg acatcgtctt
     1801 agactaccat cttggtagtg gcacaaccgc cgccgttgcc cacaaaatga accgacaata
     1861 tatcggtatt gaacaaatgg attatattga aacgcttgcc gttgaacgct tgaaaaaagt
     1921 gattgatggc gagcaaggcg gtatttccaa agccgtgaat tggcaaggtg gtggcgagtt
     1981 tgtttatgcc gaacttgccc catttaacga aaccgcaaaa caacaaattt tggcttgcga
     2041 agattcagac ggcatcaaaa cgctgtttga aggtttatgc gaacgctatt tcttgaaata
     2101 caacgtcagc gtaaatgaat ttagtcaaat cattcaagag cctgaatttc aatccttggc
     2161 attagacgaa caaaaacaaa tggtgcttga aatgttggat ttaaatcaaa tgtatgtttc
     2221 attatccgaa atggatgatg agcaatttgc aggttgctta aatgatgacg ataaagcgtt
     2281 aagccgtgaa ttctatcaat cagcaaaaaa tcaagcggag aaaaaagatg gcgaataata
     2341 aaacgttatt tgattgggtg gaagaccgca aatcaacgct ggaagaaata gaacagacag
     2401 attttttcgc gctgcctgaa tttgtagaac gcaatttaaa atatccgttt tttgaatggc
     2461 aaaaatcggc tttagaaaac tttgtgattt ttgaccgcgc ttcaaaatta aaggatttcc
     2521 ctgacatcaa aaaccgccct acccatttgc tgttcaatat ggcaacaggt gctggcaaaa
     2581 cgatgatgat ggcggcgttg attttgtatt attttgaaaa aggttatcgg cattttttgt
     2641 ttttcgtcaa tcaaaataat atcgtggata aaacggaaaa taattttatt gacccggcgc
     2701 actcaaaatt tttatttacc gagaagattt tgcaaggcga ccaagttatt cccattcaca
     2761 aagtagaaac gtttagccca cattcagacg gcattgaaat taaatttacc agtattcaaa
     2821 aactgtataa cgatatccac accgaacggg aaaaccaaac cacattggca gatttgcacg
     2881 aattgaacct tgtgatgctg ggcgatgaag cgcaccattt aaacgcacaa accaaaggca
     2941 aaaaacaagg cgagttggat ttggaagtgg aattaaaagc caatgcaggc gatgccgaat
     3001 ttgaacgcaa aggctgggag catatggttt tggaattgtt gctcaataaa aatggcaatc
     3061 ccggccaaaa tgtgctgttg gaatttaccg ccacgccacc tgaaaaagct gacgtgcaac
     3121 aaaaatacgc tgataaaatc atcacaaaat ttggtttaaa agaatttttg caaaaaggtt
     3181 ataccaaaga aatcaatttg gtatccagta cactgagcaa gaaagagcgg gtgttgcacg
     3241 ctttattgtt tgcttggtat cgccatcaaa tcgctttgaa atatggcatt gccaatttca
     3301 agcctgtgat gttgtttaga agtaagacgg ttgatgaatc aaaagcggat tatttggcat
     3361 ttttaaattg ggtagaaaat gtgcaagcag atgatttttc gtttttaaag acattttcaa
     3421 tgagcttaaa cgatagcgat aacgccaacg aacaaggcaa aacccgcacc gaacaagccc
     3481 taaaatttat gcaggaaaat ggctttgagt ttgcacattt agcaaattgg ataaaacaaa
     3541 attatcaaaa acacaatatc attattacca actccgaaac caacaaaagc aaaaccgaaa
     3601 aaaccgacag cgaaacggaa aaattgctaa acaatctgga agcggttgat aatccgattc
     3661 gtgctatttt tacggtgggt agattaaccg aaggttggga cgttttaaat ttgtttgata
     3721 ttgtgcgttt gtatgaaggg caaaacggcg gcggttcaaa taaaaaatca tgcaaaacgg
     3781 caaatacaac ggtatcagaa aaacagttga ttggtcgagg cgtgcgttat tttccatttt
     3841 cgtttgaaga taaacagccg aataagcgta aatttgacaa cgacatgcaa cacgaattgc
     3901 gtattttgga agaattgttt tattacacgc acgatgagca atcccgctat attacagaac
     3961 tgaaaaacga gttacgaaaa gacggttatt tgcctgaaaa agacgatgat aaggtattgg
     4021 caacatttaa actcaaatct gaatttgcag ataatgaaaa ttttaaaaac ttattgattt
     4081 gggcgaataa aaaaatcccc aatcccaatg ctaaaagtaa taatgcagac agcctaaaag
     4141 ccaatccgca aacactttca ttccaaattc acggcaatca actgttgcag gaaacgcaat
     4201 ttacagccga taaaaatgat gaaaaggtca agcaacttgg catacaaaat aatttttctc
     4261 aaaccataaa aatgagtgaa atggaacggc acatcttcaa taaagcatta catatcaaag
     4321 ggaaaaatag tcaatcttta ttccatttca accgtttgca aagcaaactc aacattcaaa
     4381 atcgcaatga attgcaaaat aacttgttga aagactggca aattgaattt ttaggattag
     4441 agcaagataa acaggttcgc ccggatgata aacttgcagg ctgcctgaaa atcttggaaa
     4501 tggttgaaaa gcatttgaat gaaagtgata agccatttat cggtacaaaa gaatttacgc
     4561 ctaaaacatt atgggaaatt ttcggcacgc caaaacaaaa atgggtcaaa aaagatgata
     4621 taaaaactgc tattgccatg caaaatgatt ggtatgtgat ggataatttt gccggaacgg
     4681 gtttggaaga agcgttaatt caatttattt cagcgcgttt gggcgatttg aaatctcaat
     4741 atgacattca tttaatccgt aacgaagaag tgtttaaatt gaataacttt gccaatggcg
     4801 aaggatttat gcccgacttt attttattgc tgaaagataa acaaaaatct tcttccaatg
     4861 gcgtgaatga ctttttgcat taccaaattt tcattgagcc caaaggtgag catttagtgg
     4921 aaactgatgg atggaaagaa gaatttttag aagccatcac agtggaatat gggatggata
     4981 agatcctgca aaaagataca ccgcattatc gtttgatcgg tttaccgttt tttactgatc
     5041 atcagaaaaa tggacaattt acggagtcat tccctttagg tgtggcatcg cttaaaaaat
     5101 agagtagtgc attgcaggca gccccgtttg acaaaacttc ctttacaaaa gggcgttttg
     5161 tcagatagtt cattattaaa atacagccaa attttaatgc cgtccgaacc atgtgttcag
     5221 acggcatcgt atttttcagt atttaaaccg tttccctacc ccaatcttta ccccttaaaa
     5281 tcgaggcatc gacatcttga atatcgcggt gtcccgtaaa cgccatagat atatccattt
     5341 ctttatacag gatttccagc gcacgggtta cgccttcttc gccatacgca cccaagccat
     5401 acaggaacgc ccgacctatc attgtacctt tcgcacccaa agcccacgcc ttcaaaatat
     5461 cctgaccgct gcggatgccg ctgtccatcc aaacttcgat gtcgctgccg actgcactaa
     5521 cgatgtcggg caaggctttg atggcggaca cggtatcgtc gagctggcgg ccgccgtggt
     5581 tggaaacaat caatgcgtcc gcgccgcttt tcgctgcttt ttccgcatct tcaggttcca
     5641 taatgccttt gataatcagc ttgccacccc acaaatcttt aatgcgtgca acgtcgtccc
     5701 agctcaggcg cgggtcgaat tgttcggaag tccatgaaga cagcgaggac aaatcgccga
     5761 cgtttttggc gtgtccaacg atattgcgga acgtgcggcg ttccgtgttc agcattttca
     5821 tacaccattc gggcttggtc gccagattga ttaaattggc gatggtcggt ttcggcggcg
     5881 cggacaggcc gtttttgatg tctttgtggc gttgccccaa aacctgcaaa tcagcggtca
     5941 ataccaatgc cgaacatttg gcatccttcg cgcgcttaat caggttttcc ataaactcgc
     6001 ggtcgcgcat cacataaagc tgaaaccaaa atggtgcgga agtgttctcg gcaacgtctt
     6061 caatcgagca gatagacatc gtggacaacg taaacggaat gccgaacttc tccgccgccc
     6121 gcgccgccaa gatttcaccg tctgcgtgcg ccatacccgt gaaaccagtc ggggcaatcg
     6181 ccaccggcat tttcacatcc tgcccaatca ttttggtttc gaggctgcgc ccctccatat
     6241 tgaccaatac tttttgtcgg aaacgaatgt ctttgaaatc cgaagtattt tcccgataag
     6301 tcgtttccgt ccacgaaccc gaatcgatgt aatcgtaaaa catacgcggc attttgcgct
     6361 tggcaacgcg gcgcaagtct tcgatgcagg tcattttgct caaatcacgt ttcatcttgt
     6421 ttttccctgt ttgacagcct gatggaatat gccgtccgaa accgcttgag ccttcagaca
     6481 gcatttcagg caatacccaa ataaatcact aagatttaga taatctatat caatatcaaa
     6541 aataaatcaa atcgttttga aaccgcttgc cggcaaaata ccccgaccgc cgctcctcaa
     6601 aaaacataac caactgattt aaaaaaccaa acaaataaag caaaatcaga ctataccgcc
     6661 atttaaacaa acaatcggca acagctcccc cttacttgac tgaaacactc agatattgga
     6721 caattctccc cactataaaa aagccgacac gggcaaccac caccatgaga ctgaccacca
     6781 aagggcgttt cgccgttacc gctatgctgg atttggcgat gaacgcgcaa accggcgccg
     6841 tcaaactcag tgccatcagc gaacgccaaa acatatccct ctcctatctc gagcaattgt
     6901 tcggcaaact ccgccgcgcc ggactggttg aaagcctgcg cgggcccggc ggcggctaca
     6961 tcctcgccgc accggcggca cgcatcaaca tcgcccaaat catcgccgcc gccgaagacc
     7021 ggctggacgc gacccaatgc ggcagcaaag ccaactgcca ccacggtgcg ccctgcctga
     7081 cgcacgacct ttgggagaat ttaaacaaaa ccatcaacga ctacctcggc agcgttaccc
     7141 tgcaaagcat catcgaacag aaaaacaacg gcgacggcag ccgcgtcgtc caatttacac
     7201 acatccatta aataacaccc gaaaaagaaa gagcaaacca tgaccgtcaa aacccccgtt
     7261 tacctcgact acgccgccac caccaccgtt gacaaacgcg ttgccgaaaa aatgattccc
     7321 tatctgaccg aaaccttcgg caaccccgcc tccaacagcc acgcattcgg ctgggaagca
     7381 gaagaggccg tcgaaaaagc ccgcgccgac atcgctgccc tgattaatgc cgaccccaaa
     7441 gaaatcgtct tcaccagcgg cgcgaccgag tccgacaacc tcgccatcaa aggcgcggca
     7501 aacttctaca aaaccaaagg caaacacctc attaccgtca aaaccgaaca caaagccgtt
     7561 ttagatacaa tgcgcgaact cgaacgccaa ggttttgaag taacctacct cggcgttcaa
     7621 gaaaacggtt tggttgattt agacgtactg aaagccgcca tccgcgaaga caccatcctc
     7681 gtttccgtaa tgtgggtaaa caacgaaatc ggcgtggttc aagatattcc tgccatcggc
     7741 gaaatctgcc gcgaacgtaa aatcgtcttc cacgtcgatg ccgcccaagc ctgcggcaaa
     7801 gtgcctgtcg atgtcgaagc cgccaaaatc gacctgctct cgatgtccgc gcacaaagtg
     7861 tacggcccca aaggcatcgg cgcgctgtac gtccgccgca aaccccgcgt ccgcctcgaa
     7921 gcccaaatgc acggcggcgg ccacgaacgc ggcttccgca gcggcacatt gccgacccac
     7981 caaatcgtcg gtatgggcga agccttccgc atcgccaaag aagaactcga acaagatatg
     8041 gcgcactacc gcaaactgcg cgacatcttc ctcaaaggca tcgaaggcat cgaagaagtc
     8101 tacatcaacg gcgacctcga acaccgtgct ccgaacaacc tgaacgtcag cttcaacttc
     8161 gtcgaaggcg aaagcctgat tatggcagtc aaagaactcg ccgtatccag cggctctgcc
     8221 tgtacttctg ccagtctcga accaagctac gtcctacgcg cgctcggtcg caacgacgaa
     8281 ctggcgcact catccctgcg catcaccttc ggtcgcatga ccaccgaaga agaagtgcaa
     8341 ttcgccgccg aactgattaa atccaaaatc ggcaaactgc gcgaactgtc gccgctgtgg
     8401 gaaatgttca aagacgggat tgatttgaat tcgattgagt gggcggcgca ttaatttatg
     8461 aattagtacg atgatatgag tatagtagat aagattttca aatattctcg ccacctcgat
     8521 tattgagata tagtgaactt cttatctacg gataaaattt ttatagatag tttaatattt
     8581 aaatagaact taaaaaatta tgaaaatagc caatgcatta attcacaata cagtccgtat
     8641 tgaatgcctt tcagcagacg gccaatctat atcaacggga acggcattct tattcctttt
     8701 cgatttcgac aaaacagggg taattccagt tcttgtaaca aataaacatg ttgtttttgt
     8761 agagtccgca aaaaaaatag ctattacttt gacaaaagat gaaaatggct ctccaaatca
     8821 taaagaaaat ataactttta caattgaaga ttttatacaa aattgtttac ctcatcctga
     8881 tgaaaatatt gatctatgca ttgctcctgt tggacatttt tttaatcagc tgattaatca
     8941 taatttctcg ccttttataa aaggaataag agaatctgat attatgcaaa ctgaagaaat
     9001 ggatcaatta tcagctttcg aagaagtttt tatgataggc tatcctaatg gcttatggga
     9061 ctcaaaaaac aacttaccaa tatttagaac aggaattact gctacccatc cagctattga
     9121 ttttgaaggg aaaaaagaat ttatgattga tgttgcctgt ttccctggtt caagcggttc
     9181 tccggtgttc aaatatatac ctgctgggtt aagaaaaata gaaaacgatg ggtttgcaat
     9241 tacagcagat gaaacattta aattaatggg aatcctatat gctggacctc agcaaacaat
     9301 atcaggggaa atttatataa caactgttaa taaaccaatt tctgtatctt ctattcctat
     9361 taatttaggt tttgtcataa aggcagaaaa acttttagac tttaaaccaa ttttaaagaa
     9421 ttttttggaa aaaaatagag aatgaaatta tattaaaaga ttaataaata ttagagactg
     9481 gcaatccacc ttacctaatc tacattaaaa ataaaaaaga ccgtttgaaa catcaaaaag
     9541 attttttcaa acgacctaaa agccaccaca tgaaatcaag gatacaaaac catgaacgaa
     9601 caagaacttg acctcgacaa cctcgacaac ctgcttgacg atttcgacgg cgttaccgtg
     9661 gaaggcggcg tcgattcgga aaacgacgac ggctgtgaag gcggagcgtg caaaatctaa
     9721 ctcaggccgt ctgaaaaccg gcaaacaaac cacttaaatc atcaaaacat taaggaaacc
     9781 acatcatggc atacagcgat aaagtaatcg accactacga aaatccccgc aacgtcggta
     9841 ctttcgacaa aaacgacgaa tctgtcggca ccggcatggt cggcgcaccg gcctgcggcg
     9901 acgtgatgcg cctgcaaatc aaagtgaacg atgaaggcat catcgaagat gcgaaattca
     9961 aaacttacgg ctgcggttcc gccatcgctt cgtccagcct gattaccgag tgggttaaag
    10021 gcaaaagcct ggatgacgcg ctggcaatca aaaacagcga aatcgccgag gagttggaat
    10081 tgccgccggt aaaaatccac tgctccatct tggctgaaga tgcggtaaaa gcggccgttg
    10141 ccgactaccg caaacgtcag gaaaacagat aaagcccttc agacggcatc gtcccgcaat
    10201 gccgtccgaa ccacccgccg cttcaggtcc gtccggggcg gtacaacaag gaagaaatat
    10261 gattaccctt accgagaatg ccgcaaaaca catcaatgac tatctcgcca aacgcggcaa
    10321 aggcttgggc gtacgcttgg gtgtgaaaac cagcggctgc tcggggatgg cgtacaacct
    10381 tgaatttgtc gacgaagccg atggcgacga cctgattttc gaaggacacg gcgcgcgcat
    10441 ttatatcgat ccgaaaagcc tggtttatct ggatggcacg caagtcgatt acaccaaaga
    10501 aggtttgcag gaaggtttca aatttgaaaa ccccaatgtc aaagactcct gcggctgcgg
    10561 cgaaagcttc catgtttaag acataaaaat ggcgggaccg tatcaaaacc gtcccgccat
    10621 tttttcgctt cctgcctgtt gtagctgcct ttgcctttcc ttttccgttc caccttgtgc
    10681 cggaacaaat cggatttcac taaggctttt aaagcattgt cgcgtatttt gcctttattg
    10741 tgctgcactt tgccgcccat attcagtcct ttcgtttaag aagcggcaga ttataaggca
    10801 aaaacagttt tctgccaaaa tcttacattt atcatcctac tatgtcccaa tatttcaccc
    10861 tcttccggat tgaacccgct ttcgatatcg acaccgaaaa cttggaacaa acctaccgcg
    10921 ccttggccgc ccgtttccat cccgataaat tcgcttcagc ttccgccttt gagcaaaagc
    10981 aggcagtgat gatgtcttcc accatcaacg atgcctaccg caccttgaaa aaccctatcg
    11041 accgcgccgc ctacctgctg aaaacatcgg gcatcgatgc cgacgcgccg gagcatacct
    11101 ctttcgcctc cgaattcctt atgcagcaaa tggaatggcg cgaaacgctg atggaggcac
    11161 gggcgggcaa agaccttgaa tccttgaaaa atctcgacaa cgaaatccgc gacgaacaag
    11221 aaaaactgtt ctgcggtctg aaacagtcgt ttgcccgaca agattacgac accgccgcac
    11281 aacaagtccg ccaaggcagg tttctcgaca aactccgcaa cgaaatttcc tcggcattat
    11341 aatccgcacc gtgtttcaga cggcgtaacc gccgcaccgt tccgcgtcaa aatatgctaa
    11401 aataagcaac aattttttgc catacgaaac attgaaacca tgaccgacgc aaccatccgc
    11461 cacgaccaca aattcgccct cgaaaccctg ccggtaagcc ttgaagacga aatgcgcaaa
    11521 agctatctcg actacgccat gagcgtcatt gtcgggcgcg cgctgccgga cgttcgcgac
    11581 ggtctcaagc cggtacaccg ccgcgtactg tacgcgatgc acgaattgaa aaacaactgg
    11641 aatgccgcct acaaaaaatc ggcgcgcatc gtcggcgacg tcatcggtaa ataccacccc
    11701 cacggcgata ccgccgtata cgacaccatc gtccgtatgg cgcaaaattt cgctatgcgt
    11761 tatgtgctga tagacggaca gggcaacttc ggatcggtgg acgggcttgc cgccgcagcc
    11821 atgcgctaca ccgaaatccg catggcgaaa atttcccacg aaatgctggc agacattgag
    11881 gaagaaaccg tcaatttcgg cccgaactac gacggtagcg aacacgagcc gcttgtactg
    11941 ccgacccgtt tccccacact gctcgtcaac ggctcgtccg gcatcgccgt cggcatggcg
    12001 accaatatcc cgccgcacaa cctttccgat accgtcaatg cctgcctgcg cctgctcgat
    12061 gcacccgaca ccgaaatcga cgaactgatc gacattatcc aagcccccga cttcccgacc
    12121 ggggcaacca tctacggctt gagcggcgtg cgcgaaggct ataaaacagg ccgcggccgc
    12181 gtcattatgc gcggtaagac ccatatcgaa cccataggca aaaacggcga acgcgaagcc
    12241 atcgttatcg acgaaatccc ctatcaggtc aacaaagcca agctggtcga gaaaatcggc
    12301 gatttggttc gggaaaaaac actggaaggc atttccgagc tccgcgacga atccgacaaa
    12361 tccggtatgc gcgtcgttat cgagctgaaa cgcaacgaaa atgccgaagt cgtcttaaac
    12421 caactctaca aactgactcc gctgcaagac agtttcggca tcaatatggt ggttttggtc
    12481 gacggacaac cgcgcctgtt gaacctgaaa cagattctct ccgaattcct gcgccaccgc
    12541 cgcgaagtcg ttacccgacg tacgcttttc cggctgaaga aggcacgcca tgaagggcat
    12601 atcgccgaag gcaaagcggt cgcactgtcc aatatcgatg aaatcatcaa gctcatcaaa
    12661 gaatcgccca acgcagccga ggccaaagac aaactgcttg cgcgtccttg gcgcagcagc
    12721 ctcgttgaag aaatgctgac gcgttccggt ctggatttgg aaatgatgcg tccggaagga
    12781 ttggctgcaa acatcggctt gaaagagcaa ggttattacc tgagcgagat tcaggcagat
    12841 gctattttac gcatgagcct gcgaaacctg accggcctcg atcaagaaga aattgtcgaa
    12901 agctacaaaa acctgatggg taaaatcatc gactttgtgg atatcctctc caaacccgaa
    12961 cgcattaccc aaatcatccg cgacgaactg gaagaaatca aaaccaacta tggcgacgaa
    13021 cgccgcagcg aaatcaaccc gttcggtggc gacattgccg atgaagacct gattccgcaa
    13081 cgcgaaatgg tcgttaccct gacacatggc ggctatatca aaacccagcc gaccaccgac
    13141 tatcaggcgc agcgtcgcgg cgggcgcggc aaacaggcgg ctgccaccaa agacgaagac
    13201 tttatcgaaa ccctgtttgt tgccaacacg catgattatt tgatgtgctt taccaatttg
    13261 ggcaagtgtc attggattaa ggtttacaaa ctgcccgaag gcggacgcaa cagccgcggc
    13321 cgtccgatta acaacgtcat ccagttggaa gaaggcgaaa aagtcagcgc gattctggca
    13381 gtacgcgagt tccccgaaga ccaatacgtc ttcttcgcca ccgcgcaggg aatggtgaaa
    13441 aaagtccaac tttccgcctt taaaaacgtc cgcgcccaag gcattaaagc catcgcgctc
    13501 aaagaaggcg actacctcgt cggcgctgcg caaacaggcg gtgcggacga catcatgctg
    13561 ttctccaact taggtaaagc catccgcttc aacgaatact gggaaaaatc cggcaacgac
    13621 gaagcggaag atgccgacat cgaaaccgaa atttcagacg gcatcgaaga tgaaaccgcc
    13681 gacagcgaaa acgcactgcc gagcggcaaa cacggtgttc gcccgtccgg tcgcggcagc
    13741 ggcggtttgc gcggtatgcg cctgcctgcc gacggcaaaa tcgtcagcct gattaccttc
    13801 gcccctgaaa ccgaagaaag cggtttgcaa gttttaaccg ccaccgccaa cggatacgga
    13861 aaacgcaccc cgattgccga ttacagccgc aaaaacaaag gcgggcaagg caatattgcc
    13921 attaacaccg gcgagcgaaa cggcgatttg gtcgccgcaa ccttggtcgg cgaaaccgac
    13981 gatttgatgc tgattaccag cggcggcgta cttatccgca ccaaagtcga acaaatccgc
    14041 gaaaccggcc gcgccgcagc aggcgtgaaa ctgattaact tggacgaagg cgaaaccttg
    14101 gtatcgctgg aacgtgttgc cgaagacgaa tccgaactct ccgacgcttc tgtaatttcc
    14161 aatgtaaccg aaccggaagt cgagaactga aaatcatctc ccgatgccgt ctgaagattc
    14221 agacggcatt tattttatcc ctcatccgtc atccagcttc tcacaatata gcggattata
    14281 gtcaattaaa aacaaggggc tgtcctagat aactagggaa attcaaatta agttagagtt
    14341 gcccctatga gaaaaagtcg tctaagcc
//
LOCUS       DAWGNT010000036        13935 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.036, whole genome shotgun sequence.
ACCESSION   DAWGNT010000036 DAWGNT010000000
VERSION     DAWGNT010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13935
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.036"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(103..1428)
                     /locus_tag="WHR98_000785"
     CDS             complement(103..1428)
                     /locus_tag="WHR98_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HEZ2307487.1"
                     /translation="MKKYLFRAALCGIAAAILAACQSKSIQTFPQPDTSVINGPDRPV
                     GIPDPAGTTVGGGGAVYTVVPHLSLPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCA
                     QAFQTPVHSFQAKQFFERYFTPWQVAGNGSLAGTVTGYYEPVLKGDDRRTAQARFPIY
                     GIPDDFISVPLPAGLRSGKALVRIRQTGKNSGTIDNTGGTHTADLSQFPITARTTAIK
                     GRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIR
                     IGYADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFF
                     RELAGSSNDGPVGALGTPLMGEYAGAVDRHYITLGAPLFVATAHPVTRKALNRLIMAQ
                     DTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEYRP"
     gene            1643..2482
                     /locus_tag="WHR98_000786"
     CDS             1643..2482
                     /locus_tag="WHR98_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEZ2307488.1"
                     /translation="MLVAFLIMLREGIEAALIVGIVAGFLKQSGHSKLMPKVWFGVVL
                     ASLMCLGIGYGIHSATGEIPQKQQEFVVGIIGLVAVAMLTYMILWMKKAARSMKRQLQ
                     DSVQAALNRGSGQGWALVGMAFLAVAREGLESVFFLLAVFKQSPTWQMPAGAVAGVLA
                     AAVIGALIYQGGMRLNLAKFFRWTGAFLIVVAAGLLAGSLRALHEAGIWNALQDIVFD
                     SSKYLHEDSPLGVLLGGFFGYTDHPTQGEALVWLLYLIPVMTWFLCGSRPSETLTRKE
                     ELK"
     gene            2479..3645
                     /locus_tag="WHR98_000787"
     CDS             2479..3645
                     /locus_tag="WHR98_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake system protein EfeO"
                     /protein_id="HEZ2307489.1"
                     /translation="MRKFNLTALSVMLALGLTACQPPEAEKAAPAASGETQSANEGGS
                     VSIAVNDNACEPMELTVPSGQVVFNIKNNSGRKLEWEILKGVMVVDERENIAPGLSDK
                     MTVTLLPGEYEMTCGLLTNPRGKLVVTDSGFKDTANEADLEKLSQPLADYKAYVQGEV
                     KELVAKTKTFTEAVKAGDIEKAKSLFADTRIHYERIEPIAELFSELDPVIDAREDDFK
                     DGAKDAGFTGFHRIEYALWVEKDVSGVKEIAAKLMTDVEALQKEIDALAFPPGKVVGG
                     ASELIEEVAGSKISGEEDRYSHTDLSDFQANVDGSKKIVDLFRPLIEAKNKALLEKTD
                     TNFKQVNEILAKYRTKDGFETYDKLGEADRKALQASINALAEDLAQLRGILGLK"
     gene            3909..5174
                     /gene="efeB"
                     /locus_tag="WHR98_000788"
     CDS             3909..5174
                     /gene="efeB"
                     /locus_tag="WHR98_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HEZ2307490.1"
                     /translation="MSKNQPAQPTRRTLFKTAIAAGAVGAIGGYLGGKKQGETAERTA
                     ESQHSPQAYPCYGEHQAGIVTPQQAFSIMCAFDVTAQSAKQLENLFRTLTARIEFLTQ
                     GGEYQDGDDKLPPAGSGILGKAFNPDGLTVTVGVGSSLFDGRFGLKDKKPIHLQEMRD
                     FSNDKLQKSWCDGDLSLQICAFTPETCQAALRDIIKHTVQTAVIRWSIDGWQPKSEPG
                     AMAARNLLGFRDGTGNPKVSDPKTADEVLWTGVAANSLDEPEWAKNGSYQAVRLIRHF
                     VEFWDRTPLQEQTDIFGRRKYSGAPMDGKKEADQPDFAKDPEGNTTPKDSHIRLANPR
                     DPEFLKKHRLFRRAYSYSRGLASSGQLDVGLVFVCYQANLADGFIFVQNLLNGEPLEE
                     YISPFGGGYFFVLPGVEKGGFLGQGLLGV"
     gene            complement(5243..5572)
                     /locus_tag="WHR98_000789"
     CDS             complement(5243..5572)
                     /locus_tag="WHR98_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEZ2307491.1"
                     /translation="MSLPPCPQCASEYTYEDGGQYICPECAHEWNETESAADLAAQVR
                     DANGAALQNGDTVILIKDLKVKGSSMTIKQGTKVKGIRLQEGDHNIACKIDGSAMNLK
                     SEFVKKA"
     gene            complement(5647..7017)
                     /gene="glmU"
                     /locus_tag="WHR98_000790"
     CDS             complement(5647..7017)
                     /gene="glmU"
                     /locus_tag="WHR98_000790"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEZ2307492.1"
                     /translation="MPQNTLNIVILAAGKGTRMYSKMPKVLHEIGGETMLGRVIDTAA
                     ALNPQNICVVVGHGKEQVLDTVKRDVVWVEQTEQLGTGHAVKTALPHLAAEGRTLVLY
                     GDVPLIDVETLETLLEAAGNEVGLLTDVPADPSGLGRIIRDGSGSVTAIVEEKDASAA
                     QKAVKETNTGILVLPNAKLENWLNSLSSNNAQGEYYLTDLIAKAVADGIKVHPVRVRA
                     SHLAAGVNNKRQLAELERIFQTEQAQELLKAGVTLRDPARFDLRGRLKHGQDVVIDVN
                     CIFEGEVEIGDNVEIGANCVIKNAKIGANSKIAPFSHLEDCEVGENNQIGPYARLRPQ
                     AKLANDVHVGNFVEIKNAAIGKGTKANHLTYIGDAEVGSKTNFGAGTIIANYDGVHKH
                     KTVIGDEVRIGSNCVLVSPVKIGNKVTTGAGSTITRNVEDGKLALARSRQTIIDGWVR
                     PEKNKQ"
     gene            complement(7072..7344)
                     /locus_tag="WHR98_000791"
     CDS             complement(7072..7344)
                     /locus_tag="WHR98_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore cortex protein"
                     /protein_id="HEZ2307493.1"
                     /translation="MRKTFLILMTAAALLSGCAWETYQDGNGKTAVRQKYPAGTPVYY
                     QDGSYSKNMNYNQYRPERHAVLPNQTGNNADEEHRQHWQKPKFQNR"
     gene            complement(7320..8051)
                     /locus_tag="WHR98_000792"
     CDS             complement(7320..8051)
                     /locus_tag="WHR98_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003678375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HEZ2307494.1"
                     /translation="MQENPTVWLFDLDNTLHNADAGLFTLINRAMTRYMARRLKLSES
                     AASDLRQDYWHRYGATLAGLQIHHPEIDIAEFLRESHPIDAILTRLHGMADTENTLCR
                     LNGRKAVFSNGPSFYVRAVVGALGLENRFDALFGTDDFGLLYKPNPQAYLNVCRLLDV
                     PPECCIMVDDSADNLHQAKALGMKTVRFGAKVHDLPFIDASVSDMAQLARYAETLSEH
                     RQNHYNTRTPPRKYERMLCVKPSLS"
     gene            8110..9111
                     /locus_tag="WHR98_000793"
     CDS             8110..9111
                     /locus_tag="WHR98_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEZ2307495.1"
                     /translation="MKRKIWLLPLLAVSAYLQAQTEVRLAVHKSFSLPKGLIARFERA
                     NDAKVSIIQAGGANEMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPESAP
                     VAVGLPSALAVDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSP
                     GLGFLMANISGLGEEGAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAA
                     SPAAEVYFSKGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPKLAAKLVQWLQSREV
                     QQAVPSEMWVYPAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK"
     gene            9205..10053
                     /locus_tag="WHR98_000794"
     CDS             9205..10053
                     /locus_tag="WHR98_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEZ2307496.1"
                     /translation="MDFKQFDFLHLISVSGWEHLAEKAWAFGLNLAAALLIFLVGKWA
                     AKRIVAVMRAAMTRAQVDATLISFLCNVANIGLLILVIIAALGRLGVSTTSVTALIGG
                     AGLAVALSLKDQLSNFAAGALIILFRPFKVGDFIRVGGFEGYVREIKMVQTSLRTTDN
                     EEVVLPNSVVMGNSIVNRSTLPLCRAQVIVGVDYNCDLKVAKEAVLKAAVEHPLSVQN
                     EERQAAAYITALGDNAIEITLWAWANEADRWTLQCDLNEQVVENLRKVNINIPFPQRD
                     IHIINS"
     gene            10079..10564
                     /locus_tag="WHR98_000795"
     CDS             10079..10564
                     /locus_tag="WHR98_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEZ2307497.1"
                     /translation="MDALHTIARNLTKKRQTVSCAESCTGGLLAAVFTSVAGSSQWFD
                     QSFVTYSNKAKEDRLGVLPETLLEHGAVSRQTVYEMARGAKAVAQADYAVGISGIAGP
                     GGGSESKPVGTVWFGFAFPGGSCEAMRRFDGNRESVRAQAVAFALERLAGLIENGGDA
                     V"
     gene            complement(10666..12234)
                     /gene="msrAB"
                     /locus_tag="WHR98_000796"
     CDS             complement(10666..12234)
                     /gene="msrAB"
                     /locus_tag="WHR98_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional peptide-methionine (S)-S-oxide
                     reductase MsrA/peptide-methionine (R)-S-oxide reductase
                     MsrB"
                     /protein_id="HEZ2307498.1"
                     /translation="MKHRTFFSLCAKFGCLLALGACSPKIVDAGAATVPHTLSTLKTA
                     DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFGSANLITVASPGFLH
                     EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSI
                     NEAQALALIRDPNADLGSLKHSFYKPDTQKKDSKIMNTRTIYLAGGCFWGLEAYFQRI
                     DGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDP
                     TSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAE
                     EYHQDYLIKNPNGYCHIDIRKADEPLPGKTKTAPQGKGFDAATYKKPSDAELKRTLTE
                     EQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPID
                     AKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQ
                     MDAAGYGALKSKVK"
     gene            12379..13644
                     /gene="ftsY"
                     /locus_tag="WHR98_000797"
     CDS             12379..13644
                     /gene="ftsY"
                     /locus_tag="WHR98_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEZ2307499.1"
                     /translation="MFSFFRRKKKQETPALEEAQIQETAAKAESETDQVIENIKEDAE
                     SLAESVKGQVESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAIAETVG
                     EAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELET
                     VLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKDALYDLIKPLEKPLVLPET
                     KEPFVIMLAGINGAGKTTSIGKLAKYFQAHGKSVLLAAGDTFRAAAREQLQAWGERNN
                     VTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKA
                     MPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRP
                     VPVRYIGVGEGIDDLRPFDARAFVDALLD"
BASE COUNT         2998 a         3561 c         4169 g         3207 t
ORIGIN      
        1 cgtcaaataa gaaaggaatt ttgtgcctgc ggtatcgcaa aacttcgcct taatgcgccc
       61 gattgactag ggatgggctt cagatggcat tgttttgccg gtttacgggc ggtattcggg
      121 cttcataccg ttgggtagga gctgccagac gtaacccgtg gttttctgtt tgccggcaag
      181 ttcgccggct tcgtcgccgt atccccaaaa ataatccacg cgcaccgcgc ctttaatcgc
      241 gctgccggta tcctgcgcca taatcaggcg gttgagggct ttgcgggtaa ccggatgggc
      301 ggtggcgaca aataagggcg cgcccaaggt aatgtagtgc cggtcgactg cgccggcata
      361 ttcccccatc aacggcgtgc ccagtgcgcc gacgggaccg tcattgctgc ttccggcaag
      421 ctcgcggaaa aagatatagc tggggttttg acccaaaact tcggcgaggc gttgcggatt
      481 ttgccgcata taggctttga tgccctgcat cgaggtctgc ccgagcttga ggtagccttt
      541 gtccgccata tagcgtccga tggaaacgta gggatgttcg tttttgtcgg catagccgat
      601 gcggatgtat ttgccggacg gggttttcag acggcccgag ccttggatgt gcataaaaaa
      661 aagttcgaca gggtcttcgg cgtaaccgag tatcggtgct ttgccgtcaa gcgcgccgcc
      721 gttgatttgg ttgcgcgtgt ggtaggggag gaagcggctt ccttcaaacc tgcctttgat
      781 tgccgttgtg cgtgcggtga tggggaattg ggagaggtcg gcggtatgtg tgccgccggt
      841 attgtcgatt gtgccgctgt tttttcccgt ctgcctgatg cggacaaggg cttttccgct
      901 ccgcaaaccg gcaggcaggg ggacggagat aaaatcgtcg ggaataccgt aaatcgggaa
      961 gcgggcttgt gccgtccgcc tgtcgtcgcc cttcagcacc ggctcgtaat agccggtaac
     1021 cgtaccggca aggcttccgt tgcctgcaac ctgccacggc gtgaaatagc gttcaaaaaa
     1081 ctgttttgcc tgaaaggaat ggacgggggt ttgaaaggct tgggcgcaca catcctgcca
     1141 gccttggcgg tttttcaaat tggcgcagcc gaggcggaag gattgcaggc ttttggcgaa
     1201 atcctgcgcc gcccagtggg gcagggacag gtgcggcaca acggtataaa cggccccgcc
     1261 gccgccgacc gtcgttccgg cggggtcggg gatgccgacc ggccggtccg ggccgttgat
     1321 gacggatgtg tcgggttgcg gaaaggtttg gatgctcttg ctttggcagg cggcgaggat
     1381 ggcggcggcg atgccgcaca gggcggcgcg gaacaggtat tttttcataa tggacaatgt
     1441 tgccggcagt aataaaaaaa aaagatggtt tcgggcggcg ttgcggcagc cgtggagaga
     1501 ggattttaac acagggcgca gctgcagcct gcggaacttt ccgccgcgcg gcaatgcaga
     1561 taaaaataac ttgcatttgt atttacaagc aatgaaaata ttccgataat atattattca
     1621 tcatccttgt tcgttcgcgt ttatgctggt cgctttttta attatgttgc gcgagggtat
     1681 cgaagccgcg ctcatcgtcg gcatcgttgc cggttttctg aaacagtccg gacattccaa
     1741 actgatgcct aaggtctggt tcggggtcgt ccttgcttct ttgatgtgtt tgggcatcgg
     1801 atacggcatc cattcggcaa cgggcgagat tccccagaag cagcaggagt tcgtcgtcgg
     1861 cattatcggt ttggttgctg tcgcgatgct gacttatatg attttatgga tgaaaaaggc
     1921 ggcgcgttcg atgaagcggc agcttcagga ttctgtacag gcggctttga accgtggcag
     1981 cggtcaagga tgggccttgg tcggtatggc gtttcttgcc gtggcgcgcg aaggtttgga
     2041 gagcgttttt ttcctgcttg ccgtattcaa acagagcccg acgtggcaga tgccggccgg
     2101 tgcggtagcg ggggttttgg ctgccgccgt gattggcgcg ttgatttatc agggtgggat
     2161 gcgcctgaat ctggctaagt ttttccgttg gacgggggcg tttttgattg tcgttgccgc
     2221 cggcctgctt gccggctcgc tgcgcgcgct gcacgaagca ggcatttgga acgcgcttca
     2281 ggacattgtg ttcgactcat caaaatattt gcacgaagac agcccgttgg gcgtgctgct
     2341 cggcggattt ttcggctata ccgaccatcc gacgcagggc gaggccttgg tttggctgct
     2401 gtaccttatt cccgtcatga cttggttttt gtgcggcagc aggccgtctg aaactttaac
     2461 ccgtaaagag gagctgaaat gagaaaattc aatttgaccg cattgtccgt gatgcttgcc
     2521 ttaggtttga ccgcgtgcca gccgccggag gcggagaaag ctgcgccggc cgcgtccggt
     2581 gagacccaat ccgccaacga gggcggttcg gtcagtatcg ccgtcaacga caatgcctgc
     2641 gaaccgatgg aactgaccgt gccgagcgga caggttgtgt tcaatattaa aaacaacagc
     2701 ggccgcaagc tcgaatggga aatcctgaag ggcgtgatgg tggtggacga gcgcgaaaac
     2761 atcgcccccg gactttccga taaaatgacc gtcaccctgt tgccgggcga atacgaaatg
     2821 acttgcggtc ttttgaccaa tccgcgcggc aagctggtgg taaccgacag cggctttaaa
     2881 gacaccgcca acgaagcgga tttggaaaaa ctgtcccaac cgctcgccga ttataaagcc
     2941 tacgttcaag gcgaggttaa agagctggtg gcgaaaacca aaacctttac cgaagccgtc
     3001 aaagcaggcg acattgaaaa ggcgaaatcc ctgtttgccg acacccgcat ccattacgaa
     3061 cgcatcgaac cgattgccga gcttttcagc gaactcgacc ccgtcatcga tgcgcgtgaa
     3121 gacgacttca aagacggcgc gaaagatgcc ggatttaccg gctttcaccg tatcgaatac
     3181 gccctttggg tggaaaaaga cgtgtccggc gtgaaggaaa ttgcagcgaa actgatgacc
     3241 gatgtcgaag ccctgcaaaa agaaatcgac gcattggcgt ttcctccggg caaggtggtc
     3301 ggcggcgcgt ccgaactgat tgaagaagtg gcgggcagta aaatcagcgg cgaagaagac
     3361 cggtacagcc acaccgattt gagcgacttc caagccaatg tggacggttc gaaaaaaatc
     3421 gtcgatttgt tccgtccgct gatcgaggct aaaaacaaag ccttgttgga aaaaaccgat
     3481 accaacttca aacaggtcaa cgaaattctg gcgaaatacc ggactaaaga cggttttgaa
     3541 acctacgaca agctgggcga agccgaccgc aaagcgttac aggcctctat taacgcgctt
     3601 gccgaagacc ttgcccaact tcgcggcata ctcggcttga aataagccgc aagcgttcag
     3661 acggtatttg gcggcagata ccgtctgaag ttttatagtg gattaacaaa aaccagtacg
     3721 gcgttgcctc gccttgcctt gccgtactat ttatactgtc tgcggcttcg tcgccttgtc
     3781 ctgatttttg ttaatccact atatccgcca tatattgcag ggcgggattt caacctgccg
     3841 ctatcggtta atggaaaaac ggcgtgcagg gatacccatc ctgctgcacg gatattgaag
     3901 gaaacaccat gagcaaaaac caacccgcac aaccgaccag gcgcactctt tttaaaaccg
     3961 cgatcgcagc cggagcagtc ggcgcaatcg gaggttatct cggcggcaaa aaacagggcg
     4021 aaaccgccga acgcaccgcc gaaagccaac actcgcccca agcctatccc tgctacggcg
     4081 aacatcaggc aggcatcgtt acgccgcagc aggcgttttc gattatgtgc gccttcgacg
     4141 taaccgcgca aagtgccaag cagctggaaa acctgttccg cacgctgacc gcccgcatcg
     4201 agtttctcac ccaaggcggc gaataccaag acggcgacga caaacttccg ccagccggca
     4261 gcggcatttt gggcaaagcc ttcaaccccg acgggttgac cgttaccgtg ggggtgggca
     4321 gcagcctgtt tgacggccgg ttcggactca aagacaaaaa accgattcat ttgcaggaaa
     4381 tgcgcgactt ctccaacgat aagctgcaaa aaagctggtg cgacggcgat ttgagcctgc
     4441 aaatctgtgc cttcaccccc gaaacctgcc aagccgccct gcgcgacatc atcaaacaca
     4501 ccgtccaaac cgccgttatc cgttggagta tcgacgggtg gcagcccaaa tccgaacccg
     4561 gcgcgatggc ggcgcgcaac ctgttgggct tcagggacgg cacgggcaac cccaaagttt
     4621 ccgaccccaa aactgccgac gaggttttgt ggacgggtgt ggccgccaac agcctcgacg
     4681 aaccggagtg ggcgaaaaac ggcagctatc aggcagtccg ccttatccgc cactttgtcg
     4741 agttttggga caggacgccg cttcaagagc aaaccgacat tttcgggcgg cgcaaataca
     4801 gcggtgcgcc gatggacggc aaaaaagaag ccgaccaacc ggattttgcc aaagaccccg
     4861 aggggaatac cacgcccaaa gacagccata tacgcctggc gaatccgcgc gatcccgaat
     4921 tcctcaaaaa acaccgcctc ttccgccgcg cctacagcta ttcgcgcgga ctcgcctcaa
     4981 gcggacagct tgatgtcggg ctggtgttcg tctgctatca ggcaaacctt gccgacggat
     5041 tcatcttcgt gcaaaacctc ctcaacggcg aaccgctgga agaatacatc agccccttcg
     5101 gcggcggcta tttcttcgtg ctgcccggcg tggaaaaagg cggctttttg gggcaagggc
     5161 tgctgggcgt ataaatccgc catataaaaa acgccgtctg aatccgataa ggggttcaga
     5221 cggcatttta ctgtttgggc ggtcaggctt ttttgacgaa ttcagatttt aaattcatcg
     5281 cgctgccgtc gattttgcag gcgatgttgt gatcgccttc ctgcaggcgt atgcctttga
     5341 ctttcgtacc ttgtttgatc gtcatcgagc tgccttttac cttgaggtct ttgatgagga
     5401 tgacggtatc gccgttttgc agtgccgcgc cgttggcatc gcgcacttga gccgcaaggt
     5461 cggcggcgga ttcggtttca ttccattcgt gggcgcattc ggggcagatg tattgtccgc
     5521 cgtcttcata agtgtattcg gaggcgcatt gtgggcatgg gggtaatgac atggtttgca
     5581 gtccttatcg gatgtttgtt ttggggtacc gtctgaaacc tgaaaccggc ttcagacggc
     5641 atagctttat tgtttgtttt tttcaggcct cacccagccg tcgatgatgg tttggcggga
     5701 gcgggcgagg gcgagtttgc cgtcttcgac attgcgggta atcgtgctgc ccgcgccggt
     5761 ggttactttg ttgccgattt tgacggggga gaccaagacg cagtttgaac cgatgcgcac
     5821 ttcgtcgccg atgacggttt tgtgtttgtg cacgccgtcg tagttggcaa taatcgtacc
     5881 tgcgccgaag ttggttttgc tgccgacttc ggcatcgccg atgtaggtga ggtggttggc
     5941 tttggtgcct ttgccgatgg cggcgttttt gatttcgacg aagttgccga cgtgtacgtc
     6001 gttagctagt ttggcttgcg gacgcaaacg ggcgtatggg ccgatttggt tgttttcgcc
     6061 gacttcgcag tcttcgaggt gggagaaggg ggcgattttg ctgtttgcgc cgattttggc
     6121 gtttttgatg acgcagtttg cgccgatttc gacgttgtcg ccgatttcga cttcgccttc
     6181 aaagatacag ttcacatcaa ttacgacatc ctgtccgtgt ttcagacggc ctcgtaaatc
     6241 gaaacgtgcc ggatcgcgca gggttacgcc tgctttgagc aattcttgtg cctgttcggt
     6301 ttggaagatg cgttcgagtt cggcgagctg gcgtttgttg ttcacgccgg cggcgaggtg
     6361 ggaggcgcgc actcggacgg gatgaacttt aataccgtcg gcaacggctt tggcgatgag
     6421 gtcggttaaa taatattcgc cttgggcatt gttgctggaa aggctgttca gccagttttc
     6481 cagtttggcg ttgggcagga cgagaatgcc tgtgttggtt tctttcacgg ctttttgggc
     6541 ggcacttgcg tctttttctt cgacaatggc ggttacgctg ccgctgccgt cgcggatgat
     6601 gcgccccaaa cctgacgggt cggcgggcac gtcggtcaac agcccgactt cgttgcctgc
     6661 ggcttcgagc agggtttcga gggtttcaac gtcaattaaa ggaacgtcgc cgtacaacac
     6721 cagcgtgcgg ccttcggcgg caaggtgggg cagggcggtt ttgacggcgt ggccggtgcc
     6781 gagctgttcg gtttgttcaa cccagacgac atcgcgtttg acggtgtcca aaacttgctc
     6841 tttgccgtgg ccgacgacga cgcagatgtt ttgcggattc agcgcggcgg cggtgtcgat
     6901 aacgcgcccg agcattgttt cgccgccgat ttcgtgcaaa accttgggca ttttggaata
     6961 catgcgcgtg cctttgccgg cggcgaggat gacgatgttt aaagtgtttt gcggcatagc
     7021 gttttcctgt gcaatgccgt ctgaaagggc ttcagacggc atagggtggg tttatcggtt
     7081 ttgaaatttg ggcttttgcc agtgttggcg atgctcttcg tcggcgttgt tgccggtttg
     7141 gttgggtaac acggcatggc gttcgggacg gtattggttg tagttcatat ttttcgagta
     7201 gctgccgtct tggtaataaa cgggcgtgcc ggcgggatat ttttgacgga cggcggtctt
     7261 gccgttgccg tcttgataag tttcccacgc gcagcccgac aaaagggcgg cggcagtcat
     7321 caggataagg aaggttttac gcataacatt ctttcgtatt ttcggggggg tgtgcgggta
     7381 ttgtaatgat tttggcggtg ttctgacaaa gtttctgcat accgagccag ttgcgccata
     7441 tcgcttacgg aagcatcgat aaagggcagg tcgtgcactt ttgcaccgaa ccggacggtt
     7501 ttcatgccca atgcttttgc ctgatgcagg ttgtccgcgc tgtcgtccac cataatgcag
     7561 cattcgggcg gtacgtccaa aaggcggcag acattgagat acgcttgcgg attgggtttg
     7621 tacagcagcc cgaaatcatc cgtgccgaac agtgcgtcga aacggttttc caaaccgagt
     7681 gcgccgacaa cggcacggac gtaaaacgac gggccgttgg aaaaaaccgc cttgcgcccg
     7741 ttcagacggc atagggtgtt ttccgtatcc gccatgccgt gcagcctggt caggattgca
     7801 tcgatcggat ggctttcgcg caaaaattcg gcgatgtcga tttcgggatg gtggatttgc
     7861 agtccggcga gcgttgcgcc gtagcggtgc caatagtctt gacgcaggtc ggacgcggca
     7921 gattcggaga gtttgaggcg gcgtgccata tagcgtgtca tagcgcggtt gatgagtgtg
     7981 aagaggccgg catcggcatt gtgcagcgtg ttgtcgaggt cgaacagcca cacggtcggg
     8041 ttttcttgca ttttgaaccg tgaaaatttg ttagaatgtt attttacagc gaatagagga
     8101 ggactcggaa tgaaacggaa aatttggctg ctgccgctgc tggcggtttc ggcatacctg
     8161 caggcgcaga cggaagtcag gctggcggtg cataagtcgt tcagcctgcc caaagggctg
     8221 attgcgcgtt tcgagcgggc aaacgatgcg aaagtgtcga ttattcaggc gggcggcgcg
     8281 aacgaaatgc tcaacaaact gattttgagc cgcgccaacc cgattgccga cgcggtgtat
     8341 ggtttggaca acgccaatat cggcaaggcg cgggaaatgg gcattttggc ggcggcgcaa
     8401 cccgaatccg cccccgtcgc ggtcgggctg ccttcggctt tggcggtcga ttacggctat
     8461 gtgtccatca attacgacaa aaaatggttt gaaggcaaaa agcttcctct gccgcaaacc
     8521 ctgcaggatt tgacccgccc cgaatataaa aacctattgg tcgtgccgtc ccccgccacg
     8581 tcgtccccgg ggctgggctt cctgatggcg aacatcagcg gtctgggcga agaaggcgcg
     8641 ttcaaatggt gggcacagat gcggcagaac ggcgtgaagg tcgccaaagg ctggagcgag
     8701 gcgtattaca ccgacttttc gcacaacggc ggcgcgtatc cgctggtggt cggttatgcc
     8761 gccagcccgg cggcggaagt gtatttttcc aaaggcaaat acagcgagcc gccgacgggc
     8821 aacctgtttt taaaaggcgg cgtattccgc caggtcgaag gcgcggcggt cttgaagggc
     8881 gcgaaacagc cgaagctggc ggcaaaactg gtgcaatggc tgcaaagtcg ggaagtgcag
     8941 caggcggttc cgtccgaaat gtgggtttac cccgccgtca aaaacacgcg cctgcccgac
     9001 gtgttccgct tcgcccaagc cccgacgcac accaccgccc ccgcgcagcg cgatattgat
     9061 gcgaaccagc gcggatgggt ttcccgttgg attagaacgg ttttgaaata aaacaaacat
     9121 accgccccgc agggcttcat acggcatttt tacacctgtg ccgattacgc cgcacggggc
     9181 ggatgttcga tcaagaggaa aacaatggac ttcaaacaat ttgatttttt acacctgatc
     9241 agtgtttccg gttgggagca tctggctgaa aaggcgtggg cgttcgggct gaaccttgcc
     9301 gccgcgctgc ttattttttt ggtcggaaaa tgggcggcga aacgcattgt cgctgtgatg
     9361 agggcggcga tgacgcgcgc gcaggtcgat gccacgctga ttagtttttt gtgtaatgtt
     9421 gccaatatcg gcttattgat tttggtgatt attgccgcat tgggcagatt gggcgtttcc
     9481 acaacatccg taaccgcctt aatcggcggc gcgggtttgg cggtggcgtt gtccttgaaa
     9541 gaccagctgt ccaattttgc cgccggcgcg ctgattatcc tgttccgccc gttcaaagtc
     9601 ggcgatttta tccgcgtcgg cggttttgaa ggatatgtcc gagagattaa aatggtgcag
     9661 acttctttgc ggacgaccga caacgaagaa gtcgtgctgc ccaacagcgt ggtgatgggc
     9721 aacagcatcg tcaaccgttc caccctgccg ctgtgccgcg cccaagtgat agtcggcgtc
     9781 gattacaact gcgatttgaa agtggcgaaa gaggcggtgt tgaaagccgc cgtcgaacac
     9841 cccttgagcg ttcaaaacga agagcggcag gccgccgcct acatcaccgc cttgggcgac
     9901 aatgccatcg aaatcacatt atgggcttgg gcaaacgaag cagaccgctg gacgctgcaa
     9961 tgcgacttga acgaacaagt ggtcgaaaac ctccgcaaag tcaatatcaa catcccgttc
    10021 ccgcaacgcg acatacacat catcaattct taaacgccgt ctgaaagagg agtgggaaat
    10081 ggacgcgctg cacaccatcg cccgaaacct gacgaaaaaa cgtcaaaccg taagctgtgc
    10141 cgaatcctgc acgggtgggc tgcttgccgc cgtattcaca agcgttgcag gcagttcgca
    10201 atggttcgat caaagttttg taacatacag caacaaagcc aaagaagacc gcttgggcgt
    10261 gttgcccgaa accctgctcg aacacggcgc ggtcagccgc caaaccgtct atgagatggc
    10321 gcgcggcgcg aaagccgtgg cgcaggcgga ttacgccgtc ggtatttccg gcatcgccgg
    10381 tccgggcggc ggcagcgaaa gcaaacccgt cggcacggtt tggttcgggt ttgcctttcc
    10441 gggcggaagt tgcgaagcaa tgcgccgttt tgacggcaac cgcgaatccg tccgcgcgca
    10501 ggcggtcgcc ttcgcgttgg aacggttggc ggggctgatt gaaaacggcg gcgatgccgt
    10561 ctaaacaaaa tctccgtctg gacaaaatcc ccgccggata aaaaataccg tctgaaacgt
    10621 tgcaggtttc agacggtatt ttgtcgggtt aggcggcggt gcggcttatt tcactttact
    10681 cttcaacgcg ccgtagcctg ccgcgtccat ttgttccagc gggatgaatt tcaagctcgc
    10741 gccgttgatg cagtagcgca gtccgccttt gtcgcgcggg ccgtcgggga agacgtgccc
    10801 caagtgtgag tcggcggcgt ggctgcgcac ttcggtgcgg cgcatgttgt agctgaaatc
    10861 atcgtgttcg gtaacggatt ttgcatcaat cgggcgcgtg aagctcggcc agccgcagcc
    10921 ggaatcatat ttgtcggcgg agctgaacaa aggttcgccg ctgacaacgt ccacataaat
    10981 gccgggtttg aacaagtggt cgtattcgtg gctgaaggca tattcggtcg cgctgttttg
    11041 ggtaacttgg tattgctctt cggtcagggt gcgtttgagt tcggcgtcac tcggtttttt
    11101 atacgttgcc gcatcgaagc ctttgccttg cggggcggtc ttggttttgc ccggcagcgg
    11161 ttcgtcggct ttgcggatat cgatgtggca gtagccgttg gggtttttaa tcaggtagtc
    11221 ctgatggtat tcctcggcat cgtagaagtt tttcagcggc tcgttttcaa caacgagggg
    11281 cagttggtat ttttgctgct cgcgtttgag ggcggcggcg atgacggctt tttcggcggg
    11341 gtcggtgtag tacacgccgc tgcggtattg cgtaccggtg tcgttgccct gtttgttgag
    11401 gctggtcgga tcaacgacgc ggaagaaata ttgcaggatg tcgtctaggc tgagtttgtc
    11461 ggcatcgtag gtcactttga cggtttcggc gtggcccgta tggcggtagg acacgtcttc
    11521 atagctcgga tttttcgtgt tgccgttggc gtagccggat accgcgtcaa ccacgccgtc
    11581 gatgcgttgg aaataggctt ccaagcccca gaagcagccg ccggcgaggt agatggtgcg
    11641 cgtgttcatg atttttgaat cctttttctg agtgtcgggt ttgtagaacg aatgtttcaa
    11701 actgcccaaa tcggcattcg ggtcgcggat taacgccaac gcctgcgctt cgttgatgct
    11761 gcctttgacg atgcgctgca cgtcgccgtc tttaccgatt aacgcccacg aagggtaaac
    11821 gctgatattc aggctttggg cgatcgtgcc gccgttgtcg gttacgacgg gcagcttggg
    11881 ataattcaaa ccggcatacc atttttggaa gtcgccgtct tttttctcgt gcaaaaagcc
    11941 cggagacgcg acggtaatca ggttggcgga accgaatttt gcatcttgcg cccatttttc
    12001 ggtctgtccc aattcggaca gacacaaagg acaccagctc gcccaaaatt taatcagcgt
    12061 cggtttgtct tttttcaagt aaacactggc ggggcggttg tccgcagttt tcaaagtgga
    12121 taaagtgtgc ggcacggtcg cggctccggc atcgacgatt ttgggcgaac aagcacccag
    12181 cgcaagcagg cagccgaact tggcgcaaag ggaaaagaaa gtacggtgtt tcattttgag
    12241 tttcctgtgt ggacggtttg catgattaga cgtttgagat gccgaaacct tacagctcgg
    12301 attttcagac aaccttgccg cgtaaaatac gctacaatac tacctatttc aagtttctaa
    12361 aattaaaagg aaaattcaat gttcagcttc ttccgtcgca agaaaaaaca ggaaacgccg
    12421 gctctcgagg aggctcaaat tcaggaaacc gcagcaaaag cagagtccga aaccgatcaa
    12481 gtaattgaaa atattaaaga agatgctgaa tctttagcag aaagcgtcaa agggcaggtc
    12541 gaatctgccg ttgaaaccgt cagcggtgcg gttgaacagg taaaggaaac cgttgccgag
    12601 atgctgtctg aagcagagga agcggcggaa aaagcagcgg aacaagtcga agcggcaaaa
    12661 gaagccattg ccgaaaccgt cggcgaggct gtcgggcaag ttcaagaagc cgttgcgaca
    12721 actgaagaac acaagctcgg ttgggcggcg cgtttgaaac aaggtttgac caaatcgcgc
    12781 gacaaaatgg cgaaatcgct ggcgggcgtg ttcggcggcg gacaaatcga cgaagatttg
    12841 tacgaagagc tggaaaccgt gctgattacc agcgatatgg gcatggaagc caccgaatac
    12901 ctgatgaaag acgtgcgcga ccgcgtcagc ctcaaagggc tgaaagacgg caacgaattg
    12961 cgcggcgcgc tgaaagatgc gctgtacgac ctgattaagc ctctggagaa acctttggtc
    13021 ttgcccgaaa ccaaagagcc tttcgtgatt atgcttgcag gtatcaacgg cgcgggcaaa
    13081 accacgtcta tcggcaaact cgccaaatat ttccaagcgc atggaaaatc cgtattgctg
    13141 gcggcaggcg atactttccg tgccgccgcg cgtgagcagc ttcaagcttg gggcgagcgc
    13201 aacaacgtaa ccgtgatttc gcaaaccacg ggcgattccg cagccgtttg ttttgatgcc
    13261 gtccaagctg ccaaagcacg cggcatcgac attgtgctgg ccgacaccgc cggccgcctg
    13321 cccacgcagc ttcatttgat ggaagaaatc aaaaaagtga agcgcgtgtt gcaaaaagcc
    13381 atgcccgacg cgccgcacga aatcatcgtc gtgcttgatg ccaacatcgg gcaaaacgcc
    13441 gtcaaccaag tcaaagcctt tgacgacgca ttggggctga ccggtttaat cgttaccaag
    13501 ctagacggca cggcaaaagg cggcatcctt gccgcgcttg cctccgaccg cccagttccc
    13561 gtccgctata tcggcgtggg cgaaggcata gacgatttgc gcccgtttga cgcgcgcgcg
    13621 tttgtggacg cactgctgga ttgagccgaa atgccgtccg aaaacagcag accgatgccg
    13681 tcattcccgc gcaggcggaa atccagacct tgggataacg gcaatattca aagtttataa
    13741 aagacccgtc attcccgcgt aggcgggaat ccagaccttg ggataacagc aatattcaaa
    13801 gtttataaaa gacctgtcat tcccgcgcag gcgggaatct agaaccatcg gcacggaaac
    13861 ttatcgggta aacggtttct tgagattccg cgtcctagat tcccactttc gtgggaatga
    13921 cgggatgtag gttcg
//
LOCUS       DAWGNT010000037        13530 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.037, whole genome shotgun sequence.
ACCESSION   DAWGNT010000037 DAWGNT010000000
VERSION     DAWGNT010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13530
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.037"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            312..1148
                     /locus_tag="WHR98_000798"
     CDS             312..1148
                     /locus_tag="WHR98_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEZ2307500.1"
                     /translation="MIDLHCHSTVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIA
                     EARAEADRLGLRLINGVEISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRLE
                     AIAAKLEKRGISGAYDGALALAANKEMVSRTHVAEFLIRVGHVKNKQQAFTKYLGDGK
                     SCAVRHEWATLEDCVSAVNGAGGLAVIAHPMRYDLSATAKRNLFEEFKNLGGAGIEVH
                     SGNCCKNDRLNYALLAERFGMLASAGSDFHRLNDFSGGILGACPELPENCRPVWAHFS
                     RY"
     gene            complement(1200..2492)
                     /locus_tag="WHR98_000799"
     CDS             complement(1200..2492)
                     /locus_tag="WHR98_000799"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HEZ2307501.1"
                     /translation="MQFSAFGEKFTQHSGILQLMDDLGDALKSDKPVNMLGGGNPARI
                     PEIDRAFADIFSKLAAEHAVENIGNYSNPQGDAALIDALTAFLNREYGWNLTADNIAL
                     TNGSQNAFFYLFNLFGGKFNLSDGTSAEKAILLPLAPEYIGYADVHIEGQHFVSVKPK
                     IENVEHEGEAGFFKYRVDFDALENLPELKAGKIGAICCSRPTNPTGNVLTDGEMARLD
                     ALAREHGIPLIIDNAYGMPFPNIIYSDVTLNWHENIILCFSLSKVGLPGVRTGIIVAA
                     PEVVKAVSSLNAIVNLAPTRFGAAIATPLLESGEMKRLADNVIRPFYRNQAQTAVSLL
                     KRELGAYPMKIHKPEGAIFLWLWFENLPVSSQTLYEMLKAEGTLIIPGEHFFVGIDTR
                     DYPHAGECIRMSIAQDAQTLEKGIAAIGKTVRKLYDNV"
     gene            complement(2550..4460)
                     /gene="pglD"
                     /locus_tag="WHR98_000800"
     CDS             complement(2550..4460)
                     /gene="pglD"
                     /locus_tag="WHR98_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent dehydratase PglD"
                     /protein_id="HEZ2307502.1"
                     /translation="MTLETLLALPRNIKKICFLIHDFLMIFIAFWFTQSLKADYSNEW
                     FDPANWQSFLLTALLTIGLFVRMGLYRAVTRFVSFHVLTTAFAGSIVSAVLFFLNTLI
                     FEERLRLALPIVYFLLLFVSVTGSRMVLRGLLSEHPKKQMIPVIIYGAGRSGRQLLEA
                     VKQMREYSAAAFVDDDPKLWHTVIYDLAVYQPDAIAFLIERYGVEKILLAIPGATQEQ
                     RLRIINKLEAYPCEVLTIPGMKDLMDGKISIGTLKKISVSDLLGRDSVAPDDRLMNAD
                     IEGKTVMVTGAGGSIGSELCRQIIRRRPEKLLLFELSEFALYAIEKELRETCIQKRLD
                     TEILPFLGSVQNRTLLEHVMTAFSVATVYHAAAYKHVPMVEFNTVEGIRNNIFGTLEC
                     ALAATASGVRTFVLISTDKAVRPTNTMGAGKRMAELCLQALAAEPGQKTRFSMVRFGN
                     VLGSSGSVVPLFEKQIAEGGPITLTHQDITRYFMTIPEAAQLVIQAGAMGTGGDVFVL
                     DMGESVKIIDLARQMITLSGLKPKTPEQPDGDIEILITGLRPGEKLYEELLIGDNVRK
                     TGHPRIMTADEAMLPWHELSVLLDRIRAACDRYDQQAIRTLLINAPTGFTPSDGICDL
                     LWVRETHRKNAV"
     gene            complement(4508..5683)
                     /locus_tag="WHR98_000801"
     CDS             complement(4508..5683)
                     /locus_tag="WHR98_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEZ2307503.1"
                     /translation="MLNTSLSPWPCFTQEEADAVSKVLLSNKVNYWTGSECREFEKEF
                     AAFAGTRYAVALANGTLALDVSLKAMGIGAGDDVIVTSRTFLASASCIVNAGANPVFA
                     DVDLNSQNISAETVKAVLTPNTKAIIVVHLAGMPAEMDGIMALAKEHNLWVVEDCAQA
                     HGAKYKGKSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDKDLWEKMWSYKDHGKSYD
                     AVYHREHAPGFRWLHESFGTNWRMMEMQAAIGRIQLKRLPEWTACRQAHAAKLAESLG
                     KFKSIRLVEVADYIGHAQYKFYAFVKPEHLKDGWTRDRIVSELNARKVPCYQGSCSEV
                     YLEKSFDDTPWRPKERLKNAVELGDTSLMFLVHPTLTDDEIAFCKEHIEAVLAEATR"
     gene            complement(5813..7054)
                     /locus_tag="WHR98_000802"
     CDS             complement(5813..7054)
                     /locus_tag="WHR98_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NeuD/PglB/VioB family sugar acetyltransferase"
                     /protein_id="HEZ2307504.1"
                     /translation="MSKAVKRLFDIIASASGLIVLSPVFLILAYLIRKNLGSPVFFIQ
                     ERPGKDGKPFKMVKFRSMRDALDSDGIPLPDSERLTPFGKKLRAASLDELPELWNVLK
                     GDMSLVGPRPLLMQYLPLYDNFQNRRHEMRPGITGWAQVNGRNALSWDEKFACDVWYI
                     DHYSFWLDMKILFLTVKKVLIKEGISAEGEATMPPFTGNRKLAVIGAGGHGKVVAELA
                     AALGTYGEIVFLDDRAQSSINGFPVIGTTLLLENSLSPEQYDVAVAVGNNRIRRQIAE
                     KAATLGFSLPVLIHPNAYVSPSATVGQGSVVMAQAVVQAGSVLKDGVIVNTAATVDHD
                     CLLDAFVHISPGAHLSGNTHIGEESWIGTGACSRQQIRIGSRATIGAGAVIVRDVSDG
                     MTVAGNPAKPLPRKNPETGTA"
     gene            complement(7047..8213)
                     /gene="pglH"
                     /locus_tag="WHR98_000803"
     CDS             complement(7047..8213)
                     /gene="pglH"
                     /locus_tag="WHR98_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminyl-a1,3-N,
                     N'-diacetylbacillosaminyl-a1-diphospho-di-trans,
                     octa-cis-undecaprenol synthase PglH"
                     /protein_id="HEZ2307505.1"
                     /translation="MNITIVAPYCSLPSEPYFNRFWYLAERLSQSHDVLLITSRFRHY
                     DKSFRRHEDAAATSNGRLRVKLLDEPGYRKNVSLARVASHRVFVRNLARWLHSPQAAE
                     QDIVYSAYPLMATNLLLGKHKARLGYKLIVDVQDVWPESFSSVVPLLKKVPHKLLPFA
                     SRANRAYRCADALVAVSQTYLDRAKEANPNVPGEAVYIGTDFAAIAPPPRFRSKTTRL
                     FYLGTLSYSYDVETVCKGVRKLLDDGENVELHIMGGGPDLEKLKQYENRAIKFYGYLP
                     YSEMMSIAKGCDIAVNAIHSHAMQSVTNKLSDYMALQKPILNSQTNAEVLSLLNLLPH
                     ENYRSGDVDSFVQAAKDILKRKNDPVQSDEIVRRFRRDISYRKIVNLIERLANE"
     gene            complement(8233..9306)
                     /locus_tag="WHR98_000804"
     CDS             complement(8233..9306)
                     /locus_tag="WHR98_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEZ2307506.1"
                     /translation="MKIVLTTSMAGLGGTETATVRLGRLLRQHGHDIMLASSDGPLLK
                     EAQALGIRWQPVDFYRGGLFGYLKGMIAYARMLRREQPDIIDCQMARVVPACAIAAKI
                     VSPKTKIIYHSHGLDAATYPKIAKLFDKLGVYIIGNCKHEREKLIRHGFPADRIVYAY
                     NALPPPPEFPFWKTVKGCVMLGTLSRLDTVRAVHLMLDIFKKMVDRDMPVRLNVAGIG
                     EEMDNLKAQAERLGIDGKVTFLGGVRDLTAYFKDVDILVNTPHCIGDHGAGVGNNILE
                     AGLYDTPVVTYDMAGISEMVVNGETGYCIPFGDEEAFIAAVDTLVRQPLLREAMGKRL
                     HAHVAALCSDDEIYRTTMAAYTM"
     gene            complement(9303..10724)
                     /locus_tag="WHR98_000805"
     CDS             complement(9303..10724)
                     /locus_tag="WHR98_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HEZ2307507.1"
                     /translation="MDTKEILGYAAGSIGSAVLAVIILPLLSWYFPADDIGRIVLMQT
                     AAGLTVSVLCLGLDQAYVREYYAAADKDTLFKTLFLPPLLSAAAIAALLLSRPSLPSE
                     ILFSLDDAAAGIGLVLFELSFLPIRFLLLVLRMEGRALAFSSAQLVSKLAILLLLPLT
                     VGLLHFPANTAVLTAVYALANLAAAAFLLFQNRCRLKAVRRAPFSSAVLHRGLRYGIP
                     IALSSIAYWGLASADRLFLKKYAGLEQLGVYSMGISFGGAALLFQSIFSTVWTPYIFR
                     AIEANAPPARLSATAESAAALLASALCLTGIFSPLASLLLPENYAAVRFIVVSCMLPP
                     LFCTLVEISGIGLNVVRKTRPIALATLGALAANLLLLGLAVPSGGARGAAVACATSFW
                     LFFVFKTESSCRLWQPLKRLPLYMHTLFCLASSAAYTCFGTPANYPLFAGVWAVYLAG
                     CILRHRKDLHKLFHYLKKQGFPL"
     gene            complement(10919..12028)
                     /gene="ribD"
                     /locus_tag="WHR98_000806"
     CDS             complement(10919..12028)
                     /gene="ribD"
                     /locus_tag="WHR98_000806"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEZ2307508.1"
                     /translation="MFSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQG
                     FHVKAGEPHAEVHALHQAGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAA
                     MRDPNPLVAGKGLALLEVAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSL
                     DGKTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQP
                     ARIVLDSRLRLPPNSHLVTDGQSPTYIATLERNEDRLHPYREHAHVRILMPSETADSK
                     IDLHHLMRLLADEGFGEIMVEAGSELTSAFLAENLADEIVLYRSPKILGSGKDLFSLL
                     ENRAALSAPPLWTPVSSEILGHDIKTVFRKNGNAF"
     gene            complement(12060..12524)
                     /gene="nrdR"
                     /locus_tag="WHR98_000807"
     CDS             complement(12060..12524)
                     /gene="nrdR"
                     /locus_tag="WHR98_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor NrdR"
                     /protein_id="HEZ2307509.1"
                     /translation="MKCPFCAHPDTRVADSRLMEERNAVRRRRHCPNCGKRFGTLETA
                     ELKMPAVIGPDKKRSPFNAQRLRNDLTAAARKSALTPEQIDETVRLTEHRLYTSGLRD
                     IPSAELADMVLKELLEHNTEAAVRFAALHKRFDNPADFASWLAQAVKTGGKA"
     gene            complement(12553..13395)
                     /locus_tag="WHR98_000808"
     CDS             complement(12553..13395)
                     /locus_tag="WHR98_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HEZ2307510.1"
                     /translation="MCQLLGMNCNTPTDIMFSFEGFRRRGGITDHHADGFGIGFFEGK
                     GVRLFHDDKPSANSPVADLVRAYQIKSENVVAHIRKASQGQTSLANTHPFMREMWGGY
                     WLFAHNGHLIDFFPEQGEFFHPVGTTDSERAFCHILNRLRTRFAARPDDDTLFDAIAG
                     LTHEIRKFGLFNFMLSDGIALFAHASTLLHYIVRQAPFGKARLLDDDVMVDFAEVTTP
                     SDRVAVIATLPLTRDESWSQLAVDELVMFREGNIVRHDRPENPVYMSAEEGLEIARAA
                     GVSV"
BASE COUNT         2776 a         3453 c         4274 g         3027 t
ORIGIN      
        1 caacgctgta ccggtttaaa tttaattcac tataaaacca cgttttcaga cagtctttta
       61 tagtagatta aaattgaaaa catccctatc gtcattcccg cgcaggcggg aatccggaag
      121 tttgaaatag cggttaacct taaacatttc caataaatca aagtctggat tcccgcctgc
      181 gcgggaatga cggtataggg actttttctt tgcatttgcc atacacctgt tttttaaaat
      241 gaccgctgcc gccacactgc ccgacaacat tgaaacatcc cgaccttcat tcacaacaca
      301 cataacaccc tatgatagac ctgcactgcc attccaccgt ttctgacggt atgctttccc
      361 ccgccgaagt cgtgcgcctc gcgcatcaaa acggctgcac gctgctggcg ttgaccgacc
      421 acgaccacac cggcggcatc gccgaagcgc gtgccgaagc cgacaggctc ggtttgcgcc
      481 tgattaacgg cgtggaaatc tccgtaacgt ggcgcgggcg taccatacac gttgtcggct
      541 tagactttga cgaacaagac gaaaacctgc aaaacctgtt ggcgcaagtg cggcaaggcc
      601 gtctgaaacg cctcgaagcc atcgccgcca agctggaaaa acgcggcatt tcgggcgcat
      661 acgacggcgc gctcgcgctg gcggcaaaca aagaaatggt cagccgcaca cacgtcgccg
      721 agttcctcat tcgggtggga cacgtcaaaa acaagcagca ggcgttcacc aaatacttgg
      781 gcgacggcaa atcctgcgcc gtccgccacg aatgggcgac gctggaagac tgcgtctccg
      841 ccgtcaacgg cgcgggcggg ttggcggtca tcgcccatcc gatgcgttat gatttgtccg
      901 ccaccgccaa gcgcaatctg tttgaagaat ttaaaaacct cggcggcgca ggcatcgaag
      961 tccacagcgg caactgctgc aaaaacgacc gcctcaacta cgcgcttttg gcagaacgct
     1021 tcggtatgct cgccagcgcg ggcagcgact tccaccgttt aaacgacttt agcggcggca
     1081 ttctcggcgc gtgtcccgaa ctgccggaaa actgcaggcc ggtgtgggcg catttttccc
     1141 gatattgaat gcagataaaa atgccgtctg aaaacctttc agacggcatt ttttgcggtt
     1201 taaacgttgt cgtacagttt tcggacggtt ttaccgatgg cggcaatgcc tttttccagc
     1261 gtttgagcgt cctgcgcgat gctcatgcgg atgcactcgc ccgcgtgcgg gtaatcccgc
     1321 gtgtcgatgc cgacgaagaa atgctcgccc ggaataatca gcgtaccttc ggctttgagc
     1381 atttcgtaca gggtttgcga agaaacgggc aggttttcaa accagagcca caggaaaatc
     1441 gcgccttcgg gtttgtggat tttcatcggg tacgcgccca gctcgcgctt gagcagcgag
     1501 acggcggttt gcgcctgatt gcggtaaaac ggccggatga cgttgtcggc aagccgtttc
     1561 atctcgccgc tttccagcag cggcgttgcg atggccgcgc cgaagcgcgt gggggcaagg
     1621 ttcacaatcg cgttcaggct gctgacggct ttgaccactt ccggcgcggc gacgatgatg
     1681 ccggtgcgaa cgcccggcag gccgactttg gaaaggctga agcagaggat gatgttttca
     1741 tgccaattca gcgttacgtc gctgtaaatg atgttgggga acggcattcc gtaggcgttg
     1801 tcgataatca gcggaatccc gtgttcacgc gccaaagcgt ccaaacgcgc catttcgccg
     1861 tcggtcaaca cattgccggt cgggttggtc gggcgcgaac agcaaatcgc gccgattttg
     1921 cccgctttga gttcgggcag gttttccagt gcgtcaaagt ccacgcggta tttgaagaag
     1981 cctgcttcgc cttcgtgttc gacgttttcg attttgggct tgacggaaac gaagtgctgc
     2041 ccttcgatat gtacgtcggc atagccgatg tattcgggcg cgagcggcaa caaaatggct
     2101 ttttctgcgg atgtgccgtc tgaaaggttg aatttgccgc cgaagaggtt gaataaatag
     2161 aaaaacgcgt tttgcgaacc gttggtcagc gcgatattgt cggcggtcag gttccagccg
     2221 tattcgcggt tgaggaaggc ggtcaacgcg tcaatcagcg cggcatcgcc ttgggggttg
     2281 gagtagttgc cgatgttttc gacggcatgt tctgccgcca gtttggagaa tatgtcggca
     2341 aacgcccgat cgatttccgg aatgcgcgcc gggttgccgc cgccgagcat gttgacgggc
     2401 ttgtcgcttt tgagcgcgtc gccgaggtcg tccatcagtt gcaggatgcc gctgtgttgc
     2461 gtgaattttt cgccgaatgc tgaaaactgc atatcaaact ccgtgtgtgt gtcaggcagg
     2521 ttggtttgta cgttatgccg tctgaaggtt cagacggcat tttttctgtg tgtttctcgt
     2581 acccaaagca ggtcgcagat accgtcgctt ggggtaaagc cggtcggggc gttgatgagc
     2641 agggtgcgga ttgcctgctg gtcgtaacgg tcgcaggccg cacggatgcg gtcgagcagg
     2701 acagagagct cgtgccacgg cagcatcgcc tcgtcagccg tcataatgcg cggatggccg
     2761 gttttgcgga cgttgtcgcc gatgagcagc tcttcgtaga gtttttcgcc gggacgcagt
     2821 ccggtaatga ggatttcgat gtcgccgtcg ggttgttcgg gtgttttggg tttgaggccg
     2881 cttaaggtaa tcatttggcg ggcaaggtcg atgattttga cggattcgcc catatcgagg
     2941 acgaatacgt cgccgcccgt acccatcgcg ccggcttgga taaccagttg cgccgcttcg
     3001 ggaatggtca tgaagtagcg ggtaatgtct tggtgggtca gggtaatcgg gccgccttct
     3061 gcaatctgtt tttcaaacag cgggacaacg gagccggacg aacctaaaac attgccgaaa
     3121 cgcaccatgc tgaagcgggt tttttgtccg ggttcggcgg cgagcgcttg aaggcagagt
     3181 tccgccatgc gtttgccggc acccatggtg ttggtggggc ggacggcttt gtcggtggag
     3241 atgaggacga aagttcttac gcccgatgcc gtggcggcaa gcgcgcactc gagtgtgccg
     3301 aagatgttgt tgcgtatgcc ttcgacggtg ttgaactcga ccatggggac gtgtttgtag
     3361 gcggcggcgt gatagacggt cgcaacggaa aaggcggtca tgacgtgttc gagcagcgtg
     3421 cggttttgca ccgaaccgag aaagggcagg atttcggtat cgaggcgttt ttggatgcag
     3481 gtttcgcgca attctttttc gatggcgtac agggcgaatt cggataactc gaacagcagc
     3541 agcttttcgg ggcggcggcg gataatctgg cggcagagtt ccgaaccgat ggagccgccc
     3601 gcgccggtta ccatgacggt tttgccttcg atgtcggcat tcatgaggcg gtcgtctggt
     3661 gcgacggaat cacgcccgag caggtcggac acagagattt ttttgagcgt gccgatgctg
     3721 atttttccgt ccatcaggtc tttcattccg ggaatggtca acacttcgca gggataggct
     3781 tccagtttgt tgatgattcg gaggcgttgt tcctgagtcg cgccggggat ggcgagcagg
     3841 attttttcca cgccgtagcg ttcgatgagg aaggcgatgg catcgggctg gtaaacggca
     3901 aggtcgtaga tgacggtgtg ccacagtttg gggtcgtcgt ccacaaaggc ggcggcggaa
     3961 tattcgcgca tttgtttgac ggcctcaagc agttgtctgc ccgaccgtcc cgcgccgtaa
     4021 atgatgacgg ggatcatctg ttttttgggg tgttcggaca acagtccgcg caaaaccata
     4081 cgcgagccgg tcacggaaac aaacagcagt aagaaataga caatcggcag ggcgaggcgc
     4141 agcctttctt caaaaatcaa tgtgttgagg aagaacagga cggcggaaac aatgctgccg
     4201 gcaaaagcgg tggtcaggac gtggaaactg acaaagcgtg taacggcacg gtagagcccc
     4261 attctgacga acaggccgat ggtcaacagc gcggtcaata ggaaagactg ccagttggca
     4321 gggtcgaacc attcgttcga gtagtcggcc ttcaggcttt gggtaaacca aaaggcaatg
     4381 aaaatcatca gaaaatcgtg tatgaggaaa cagattttct tgatgttgcg cggtagggca
     4441 agcagggttt ccagagtcat gttgtcggcg gcgtgtattt ttcagacggc atatgccgtc
     4501 tgaatggtta tcgtgtggct tctgccaata cggcttcgat gtgttctttg cagaacgcga
     4561 tttcgtcgtc ggtcagcgtc gggtgcacca agaacatcag gctggtgtcg cccagttcga
     4621 cagcattttt caaacgctct ttcggccgcc aaggcgtgtc gtcgaaagat ttttccaaat
     4681 agacttcgga gcagctgcct tgatagcagg ggactttgcg cgcgttcagt tcgctgacga
     4741 tgcggtcgcg cgtccagccg tctttgaggt gttcgggttt gacgaaagcg tagaacttat
     4801 attgcgcgtg tccgatgtag tcggcgactt caaccaagcg gatacttttg aatttgccta
     4861 ggctttccgc cagcttggcg gcgtgcgctt gacggcaggc agtccattcg ggcaggcgtt
     4921 tgagctggat gcgcccgatt gccgcctgca tttccatcat acgccagttt gtgccgaaac
     4981 tttcgtgcag ccagcggaag cccggtgcgt gttcgcggtg gtacacggca tcatagcttt
     5041 tgccatggtc tttgtacgac cacatttttt cccacaaatc cttgtcgttg gtggttacca
     5101 taccgccttc gccgccggtg gtcatgattt tgtcttggca gaacgaccac gcgccgacgt
     5161 gtccgataga gcctacggat ttgcctttgt atttcgcgcc gtgcgcttgg gcgcagtctt
     5221 cgacaaccca aagattatgt tcttttgcca aagccataat gccgtccatt tcagcgggca
     5281 taccggcaag gtgaaccacg ataatcgcct tggtattcgg ggtcagcacg gctttgacgg
     5341 tttccgcgct gatgttttgg ctgttcaaat ccacatcggc aaacaccgga tttgcgcccg
     5401 cgttcacaat gcaggaagcg gaagccagga aagtgcgcga agtaacaatc acatcgtcgc
     5461 ctgcgcctat gcccattgct ttgagcgaga catcgagtgc cagcgtgccg ttggcaaggg
     5521 cgacggcgta tcgcgtgccg gcaaaggcgg caaattcttt ttcaaattcg cggcattcgc
     5581 tgcccgtcca gtaattgact ttgttggaca gcaggacttt ggaaacggca tcggcttctt
     5641 cttgggtaaa gcagggccac ggggagaggg aggtgttcag catggtgttc catccgtcgg
     5701 gtttggacgg catttccgac cctatgccgt ctgaagggga tgcgccccga aaaatcgggc
     5761 gtgcgccgca ggtgttgtca aaaccgctcg gtgcggtgtg tattttaatc gcttatgccg
     5821 tcccggtctc ggggtttttg cgtggcaggg gctttgccgg gttgcccgcg acggtcatgc
     5881 cgtctgaaac gtcgcgcacg ataaccgccc ccgctccaat ggttgcgcgg ctgccgatac
     5941 ggatttgctg gcggctgcac gcgcccgtgc ctatccagct ttcttcgccg atatgcgtgt
     6001 tgcccgacag gtgcgcgccc gggctgatgt ggacgaaagc gtcaagcagg cagtcgtgat
     6061 cgacggtggc ggcagtgttc acaatcacgc cgtctttcaa tacgctgcct gcctgtacga
     6121 ccgcctgagc catgacgacg ctgccctgac cgacggttgc cgacggggaa acatatgcgt
     6181 tcggatgaat caggactggc agggagaaac cgagtgtggc ggctttttcg gcgatttggc
     6241 ggcggatgcg gttgttgccg acggcgacgg caacgtcata ttgttcgggc gataaactgt
     6301 tttcaagcag cagcgtcgtg ccgatgacgg ggaagccgtt gatgctgctt tgggcgcggt
     6361 cgtccaaaaa aacgatttcg ccgtatgtgc cgagtgcggc ggcaagctcg gcaacgactt
     6421 tgccgtgtcc gcccgcgccg ataacggcaa gtttgcgatt ccccgtgaaa gggggcatag
     6481 tggcttcccc ttccgccgaa atgccttctt tgatcaagac ttttttgact gtcaaaaaca
     6541 ggattttcat atccagccaa aaactgtaat ggtcgatata ccaaacatcg caggcgaatt
     6601 tttcgtccca cgaaagcgcg ttgcgcccgt tgacctgcgc ccagccggta atgcccggtc
     6661 tcatttcgtg gcggcggttt tggaagttgt cgtacagcgg cagatattgc atcagcagcg
     6721 ggcgcgggcc gaccaggctc atgtcgcctt ttaagacatt ccataattca ggcagttcgt
     6781 ccaaactagc ggcacgcagt tttttgccga agggtgtgag ccgctcgctg tcgggcagcg
     6841 gaatgccgtc tgaatcaagc gcgtcgcgca tggaacggaa tttgaccatt ttaaaaggtt
     6901 ttccgtcctt tccggggcgt tcttgaatga agaagacggg cgaacccaga ttcttgcgga
     6961 tgaggtacgc caaaatcagg aaaacgggtg agaggacaat cagccccgat gcggatgcga
     7021 tgatgtcgaa caggcgtttg acggctttac tcatttgcca atctttcaat caggttgacg
     7081 attttccgat aggaaatgtc gcgcctgaag cggcggacga tttcatcgga ctgaacgggg
     7141 tcgtttttgc gtttcaaaat atctttggcg gcttgaacga agctgtccac gtcgccggaa
     7201 cggtagtttt cgtgcggcag caggttcaag aggctaagga cttcggcatt ggtctggctg
     7261 ttcagaatcg gtttttgcaa agccatatag tcggagagtt tgttggtaac cgactgcatg
     7321 gcgtggctat ggatggcgtt gacggcaatg tcgcagcctt tggcaatcga catcatttca
     7381 gaatagggta aataaccgta aaacttgatg gcgcgatttt catattgttt gagtttctcc
     7441 aaatcgggtc ctccgcccat aatgtgcaat tcgacgtttt cgccgtcgtc taaaagtttc
     7501 cgaacacctt tgcacacggt ttccacgtcg tagctgtaac tgagcgttcc caagtagaaa
     7561 aggcgggtgg ttttggagcg gaatcgcggg gggggggcga tggcggcaaa atccgtaccg
     7621 atatagacgg cttcgccggg tacgttcgga ttggcttctt tggcgcggtc gagataagtc
     7681 tgcgatacgg caaccagcgc gtcggcgcag cggtaggcac ggttggcgcg tgaagcaaag
     7741 ggcagcagct tgtgcggtac ttttttcaac aatggtacga ccgaggagaa agactccggc
     7801 catacgtcct gcacatcgac aatcagtttg tagcccaaac gcgctttgtg tttgcccaac
     7861 agcaggttgg tcgccatcag cggataggca gaatagacga tgtcctgttc cgccgcctgc
     7921 gggctgtgca gccagcgtgc caaattgcgg acgaatacgc ggtggctggc gacgcgggcg
     7981 agggagacgt tttttcggta gccgggttcg tccagcagct tgacgcgcag cctgccgttt
     8041 gaagtggcgg cagcatcttc atgccgtctg aatgatttgt cgtagtggcg gaaacggctg
     8101 gtaatcagca acacgtcgtg cgattgcgac aatcgttctg ccagatacca aaagcggttg
     8161 aaatacggtt cggacggcag cgagcaataa ggggcgacta tggtgatgtt catcggcggc
     8221 tttcagacgg cattacatgg tatacgccgc catggtggta cggtagattt cgtcgtcgga
     8281 acagagtgcg gcgacgtgtg cgtgcagcct tttgcccatt gcttcgcgca acagcggttg
     8341 tctgacgagc gtgtctacgg cggcgataaa ggcttcttcg tcgccgaagg ggatgcagta
     8401 acccgtttcc ccgttgacga ccatttcgga aatgcccgcc atatcgtagg taacgacggg
     8461 cgtgtcgtaa agtccggctt ctaagatgtt gttgcccacg cctgcgccgt ggtcgccgat
     8521 gcagtggggc gtgttcacca aaatatccac gtctttgaag taggcggtca aatcgcgcac
     8581 gccgccgagg aaggtaactt tgccgtctat gcctagacgt tccgcctgcg ctttcaaatt
     8641 gtccatttct tcgcctatgc ccgccacgtt caggcgtacg ggcatatcgc ggtcgaccat
     8701 ttttttgaaa atgtccagca tcagatgcac ggcgcggacg gtgtccagac gcgacagcgt
     8761 gccgagcatg acgcagcctt tgacggtttt ccagaaagga aattccgggg ggggggggag
     8821 tgcgttgtag gcgtagacaa tccggtcggc ggggaaaccg tggcggatga gtttttcgcg
     8881 ttcgtgtttg cagttaccga tgatgtacac gcccagcttg tcgaagagtt tggcgatttt
     8941 ggggtaggtt gccgcgtcca aaccgtgcga gtggtagatg attttggttt tcggcgaaac
     9001 gattttggcg gcaatggcgc aggcgggtac gacgcgcgcc atttggcagt cgatgatgtc
     9061 gggttgttcg cgccgcagca ttcgggcgta ggcaatcata cctttgaggt agccgaaaag
     9121 gccgccgcga tagaaatcga cgggttgcca acgtatgccc aaggcttgcg cctctttgag
     9181 caacggtccg tccgaagagg caagcatgat gtcgtgtccg tgctgcctga gtagcctgcc
     9241 gaggcggacg gtggcggttt ccgtgccgcc caagcctgcc atagatgtgg tcaaaacgat
     9301 tttcataatg ggaaaccttg ttttttcaaa taatgaaaca gtttgtgcaa atctttccgg
     9361 tggcgcagga tgcagcctgc cagatatacc gcccatacgc cggcaaacag ggggtagttt
     9421 gccggcgtgc cgaagcaggt gtaggccgcc gaggaggcca ggcagaacaa tgtgtgcata
     9481 taaagcggca ggcgtttgag cggctgccac aggcggcagg agctttcggt cttgaaaaca
     9541 aaaaacagcc aaaatgaggt ggcacaggca accgccgcgc cgcgcgcgcc gccggacggt
     9601 acggcaagcc ccagcagcag caggtttgcc gccagcgcgc ccaaggtggc gagcgcgatc
     9661 gggcgtgttt ttcggacgac gttcaaaccg atgccgctga tttctaccag cgtgcaaaac
     9721 agcggcggca gcatacacga tacgacgata aaccggacgg cggcgtagtt ttccggcagc
     9781 aggagggagg cgaggggcga gaaaatgccg gtcaggcaga gggcggaggc aagcagggcg
     9841 gcggcggatt ctgccgttgc cgagaggcgg gcgggcgggg cgtttgcttc gattgcgcgg
     9901 aaaatatacg gtgtccagac cgttgaaaag atgctttgga acaataatgc cgccccgccg
     9961 aacgaaatac ccatcgaata aacgccgagc tgttctaggc cggcatattt tttcaggaac
    10021 aaacggtcgg cggatgccag cccccaatag gcgatgctgc ttagtgcgat cggtatgccg
    10081 tagcgcaggc cgcgatgcag gacggcggat gaaaacggtg cgcgccggac ggccttcaga
    10141 cggcatcggt tttgaaacag caaaaaggcg gcggcggcaa ggtttgccag cgcgtaaacg
    10201 gcggtcagga cggcggtgtt cgccggaaag tgcagcagcc cgaccgtcag cggcagcagc
    10261 agcaggatgg cgagcttgga cacgagttgc gcggacgaaa aggcaagggc gcgtccttcc
    10321 atacgcaaaa ccagtaagag aaagcggatg ggcaggaagc tcagttcaaa cagcaccagc
    10381 ccgatgccgg cggcggcatc gtcgagcgaa aacaggattt cagacggcag ggatgggcgg
    10441 gaaagcagca gggcggctat cgcggcggca gacagcagcg gcggcaggaa cagggttttg
    10501 aacaaggtgt ctttgtcggc ggcggcatag tattcgcgga cgtatgcctg atccagcccg
    10561 aggcacaata ccgacaccgt cagtcccgcc gccgtctgca tcagcacgat gcgcccgatg
    10621 tcgtcggcgg ggaaatacca cgacagcagc ggcaggatga tgacggctaa aaccgcgctg
    10681 ccgatcgagc ctgccgcgta gccgaggatt tcttttgtgt ccatttttga tgtccgggcg
    10741 gcggcgggat gctgcctgtg tcgtctgaag cctttcttga tcggaatttg acggctttca
    10801 gaccgtcgcg gctgccggcg gggtgcggca gtccgggtcg cgttttttcg ggtgggcggc
    10861 ggtctgaatg gtgccgtttt ttatcggcgt tattatatag tgaaacggcg caaacccttt
    10921 aaaaggcgtt gccgtttttt cggaacacgg ttttgatgtc gtgtccgagg atttcgcttg
    10981 aaacgggtgt ccacaagggc ggtgcggaaa gggcggcgcg gttttcgagc agggaaaaca
    11041 ggtctttgcc gctgccgagg attttgggcg aacggtacag cacgatttcg tctgccagat
    11101 tttctgccaa aaatgcggat gtgagttcgg agcctgcttc gaccatgatt tcgccgaaac
    11161 cttcgtcagc aaggaggcgc atcaggtggt gcaggtcgat tttgctgtct gccgtttcag
    11221 acggcatcag gatgcggacg tgtgcgtgtt cccgataggg gtgcagtctg tcttcgttgc
    11281 gttcgagtgt ggcgatgtag gtcggagatt gtccgtcggt aaccaaatgg ctgttcgggg
    11341 gcaggcgcag gcggctgtct aaaacgatgc gtgcgggttg gcgcaaagtt ggaaaagcgc
    11401 ggacgttgag ccggggattg tccgccaaca ccgtgccgat gccggtcagc accgcgcagc
    11461 tttcggcacg caaaacctgt acgtcggcac gcgcgtcttc gccggtaatc caaaagctgc
    11521 tgccgtctga aagggcggtt ttgccgtcca gcgaaacggc gcatttgagg cggacaaagg
    11581 ggcggcggcg ttcgatgcgc gacaggaagc ctcggttgag ttcccttgcc tgatgttcga
    11641 gtaaaccgca ttccgtcttg atgccagcta cttcgagcag ggcaagccct ttgcctgcaa
    11701 ccagcgggtt ggggtcgcgc atggcggcga cgacgcgtgt tacgccggaa cggagcagag
    11761 cttcggcgca gggcggtgtg cgtccgtaat ggctgcatgg ttcgagggta acaaaggcgg
    11821 tcgcgccttg agccatttcg cccgcctgat gcagggcgtg gacttcggcg tgcggttcgc
    11881 ccgctttgac gtggaagccc tgcccgacaa cttggctgcc gtgtgcgata acgcagccga
    11941 cgcgcggatt gggcgaagtg gaaaaacgcc ccaaagcggc aagtcggagg gcgttttcca
    12001 tcatggatat atctgtgtcc gaaaacatgg ggataccgta tcagtatggg ttgggggaat
    12061 caggctttgc cgcctgtttt gacggcttgc gccagccacg aggcaaagtc tgccggattg
    12121 tcgaagcgtt tgtgcagggc ggcgaaacgg acggcggctt ccgtgttgtg ctcaagcagc
    12181 tcttttagca ccatgtcggc aagttcggca gaggggatgt cgcgaagacc cgaagtgtag
    12241 agcctgtgtt ccgtcaggcg gacggtttcg tcgatctgtt cgggtgtcag ggcggatttt
    12301 cgggcggcgg cggtcaggtc gttgcggagg cgttgtgcat taaagggcga acgttttttg
    12361 tccggaccga tgacggcggg cattttgagt tcggcggttt cgagcgtgcc gaagcgtttg
    12421 ccgcagttgg ggcagtggcg gcggcggcgc acggcgttgc gttcttccat cagacgcgaa
    12481 tcggcaacgc gggtgtcggg gtgggcgcaa aacgggcatt tcatagcgtt tcttcctgat
    12541 gccgtctgaa cgtcaaaccg atacgccggc ggcgcgggcg atttccaaac cttcttcggc
    12601 actcatatag acggggtttt cgggacggtc gtgtcggacg atgttgcctt cgcggaacat
    12661 gaccagttcg tccacggcaa gttgggacca tgattcgtcg cgggtcagtg gcagggtggc
    12721 gataacggcg acgcggtcgg agggcgtggt tacttcggca aaatcgacca tcacgtcgtc
    12781 gtcgagcagg cgcgccttgc cgaacggggc ttggcggacg atgtagtgca gcagtgtgct
    12841 ggcgtgggca aacagggcaa tgccgtctga aagcataaag ttaaacagcc cgaacttgcg
    12901 gatttcgtgc gtcagccccg caatcgcgtc aaacagcgtg tcgtcgtcgg gacgggcggc
    12961 aaagcgggtg cgcaggcggt tgaggatgtg gcagaacgcg cgttcggaat cggttgtgcc
    13021 gacggggtgg aaaaattcgc cctgttcggg aaaaaaatca atcaaatgtc cgttgtgggc
    13081 aaacagccag tagccgcccc acatttcgcg cataaaggga tgggtgttcg ccagcgaggt
    13141 ttgtccttgt gatgctttgc ggatatgggc gacgacgttt tccgatttaa tctggtaggc
    13201 gcgcacgagg tcggcgacgg gcgaattggc actcggcttg tcgtcatgga acaggcgcac
    13261 gcctttgcct tcgaaaaagc cgatgccgaa accgtcggca tggtggtcgg taatgccgcc
    13321 cctgcggcgg aagccttcaa aggaaaacat aatatcggtc ggcgtattgc agttcatgcc
    13381 cagcagttga cacatggttt gtcccaatga ttcagatggt cgcaagtatt cggattatac
    13441 cccgaactga aaatgccgtc tgaaatacgg cttgttcccc gttattccct cgaaaacaga
    13501 aaacagaaaa caaagacgga aacttaagat
//
LOCUS       DAWGNT010000038        13490 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.038, whole genome shotgun sequence.
ACCESSION   DAWGNT010000038 DAWGNT010000000
VERSION     DAWGNT010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13490
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.038"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(127..1083)
                     /gene="gshB"
                     /locus_tag="WHR98_000809"
     CDS             complement(127..1083)
                     /gene="gshB"
                     /locus_tag="WHR98_000809"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HEZ2307511.1"
                     /translation="MKVLFIADPMASFKTYKDTTYAMMREMAKRGWRLFHTLSSGLSV
                     KNGLVVADASAFEFLGAQDDHDKNWFAAADKVQTALEAFDAVIMRTDPPFDMQYLYAT
                     QLLTLAEQQGAKVFNSGQAMRDFNEKLAILNFSRFTAPTLVTTRSADVRAFLKEHGDI
                     IIKPLDGMGGMGIFRLTEKDPNIGSILETLMQLDSRTIMAQRYIPEIVHGDKRILIIG
                     GEVVPYALARIPQNGETRGNLAAGGRGVAQELSERDREIAETLAPELKRRGILLAGLD
                     VIGSNLTEVNVTSPTGFQEIMKQKGFDVAAMFADAVAAWSVR"
     gene            complement(1176..2864)
                     /locus_tag="WHR98_000810"
     CDS             complement(1176..2864)
                     /locus_tag="WHR98_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase/YqeY domain fusion
                     protein"
                     /protein_id="HEZ2307512.1"
                     /translation="MLNKDQFADNHFIRTFIEEDLKSGKHEAVQTRFPPEPNGYLHIG
                     HAKSICLNFGLAYIYDGLCNLRFDDTNPEKENDEYVNAIKEDVEWLGFHWAGEPRFAS
                     NYFDQLYDYAVGLVKDGKAYVDDLTPEEMREYRGTLTEAGKNSPYRDRSIEENLDLFT
                     RMKNGEFPDGSKTLRLKIDMASGNINMRDPVIYRIRRAHHHNTGDKWCIYPMYDYTHC
                     ISDAIEGITHSLCTLEFEAHRPLYDWVLDNIPAPHATRPRQYEFSRLELLYTITSKRK
                     LNQLVVEKHVSGWDDPRMPTISGMRRRGYTPEGLRLFAKRAGISKSENIVDMSVLEGA
                     IREELENSAPRLMAVLNPLKVTLTNFETGRTQSRRAAFHPNHEEMGDREVPVSQTIYI
                     EADDFAENPPKGFKRLIPGGEVRLRHGYVIKCDEVVKDEAGNVVELKCSIDHDTLGKN
                     PEGRKVKGVIHWVSAEHAAEIKVRLYDRLFTVERPDAVRGEDGEYLPFTDFLNPESVK
                     EITAYAEPAAKDLPAESRWQFERIGYFVTDRKDHGKDTPVFNRTVTLKDSWQPK"
     gene            complement(2976..3749)
                     /locus_tag="WHR98_000811"
     CDS             complement(2976..3749)
                     /locus_tag="WHR98_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEZ2307513.1"
                     /translation="MKPKIQRHGEILSLVRRHQFMSVDELAAALDVTPQTIRRDIREL
                     EEAGSLKRHHGGASSGGNLPEGLPADRQTRCQNEKNAIARLIAEHIPDGSSLFVSIGT
                     TMEAVASELVRRRGSLRIITNNIHVASIVSARTDYTVIITSGVVRPLDGGITGVATVD
                     FINQFKVDYAVMSTHGVESDGSLLDDDYKEVSVMQAMIANARVRFLGVDHSKFRSNAL
                     VRLGDITAFDKVFTDRLPDTAMQKMLKEAGVECLIADAV"
     gene            complement(3792..4694)
                     /locus_tag="WHR98_000812"
     CDS             complement(3792..4694)
                     /locus_tag="WHR98_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HEZ2307514.1"
                     /translation="MDSLMTLLSVLIPMFAGFFIRVPKPYLPALDKVLSVLVYAVLLL
                     IGVSLSRVEDLGSRLDDMALTVLWLFVCTVGANLLALAVLGKLFPWRIKGKGKGVSVG
                     VSGSVGQLGCVLLGFAFGKLMRDIWMPSESAGMYCLMLLVFLIGVQLKSSGVSLRQVL
                     VNRRGIRLSVWFMLSSLSGGLLFAASTDGVSWTKGLAMASGFGWYSLSGLVMTEAYGA
                     VWGSIMLLNDLARELFALAFIPLLMKRFPDAAVGVGGATSMDFTLPVIQGAGGLEVVP
                     VAVSFGVVVNIAAPFLMVVFSTLG"
     gene            complement(4843..5559)
                     /locus_tag="WHR98_000813"
     CDS             complement(4843..5559)
                     /locus_tag="WHR98_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEZ2307515.1"
                     /translation="MNFENDDIIHAPTTSSLILEERHDSELFRVYALILDGITDQVLL
                     PGKKLTESELCRQMVCSRNTVRGALSLLAHDKIVDLQPNRGAFVHVPDLKEMQDVFNA
                     RIEMETMILNILADLPDLETRLKPLYAMIRREEEASGRGDRVGWNRLSNAFHVELARL
                     VGNDVLFDIMNTLCARSSLIVAVAGVHREEKHAINTHTHSEHREILDLLLAGRRNRVV
                     KILRRHLGNCMERLEKTLED"
     gene            complement(6118..6540)
                     /locus_tag="WHR98_000814"
     CDS             complement(6118..6540)
                     /locus_tag="WHR98_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEZ2307516.1"
                     /translation="MQVTSKWIDGMCFVGTTEGGHSVVMEGSAAEGAAKRGPSPLEML
                     LLGVAGCSSIDVVMIAEKQRQKVTDCRATVTAKRADDAPRVFTEIHIHFKVFGHDLKE
                     SAIERAVQMSAEKYCSASIMLGKAAKITHSFEIAGADK"
     gene            complement(6658..7329)
                     /locus_tag="WHR98_000815"
     CDS             complement(6658..7329)
                     /locus_tag="WHR98_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HEZ2307517.1"
                     /translation="MMKTFKNIFSAAILSAALPCAYAAGLPQSAVLHYSGSYGIPATM
                     TFERSGNAYKIVSTIKVPLYNIRFESGGTVVGNTLHPTYYRDIRRGKLYAEAKFADGS
                     VTYGKAGESKTEQSPKAMDLFTLAWQLAANDAKLPSGLKITNGKKLYSVGGLNKAGTG
                     KYSIGGVETEVVKYRVRRGDDTVMYFFAPSLNNIPAQIGYTDDGKTYTLKLKSVQING
                     QSAKP"
     gene            complement(7345..7971)
                     /locus_tag="WHR98_000816"
     CDS             complement(7345..7971)
                     /locus_tag="WHR98_000816"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEZ2307518.1"
                     /translation="MKNIVILISGRGSNMQAIVNAAIPNVRIAAVLSNSETAAGLQWA
                     AGQGIPTDSLNHKNFESRLAFDTAMMEKIDAYQPDLVVLAGFMRILTPEFCAHYEGRL
                     MNIHPSVLPSFTGLHTHERALEAGCRVAGCTIHFVTAELDCGPIVSQGIVPILDGDTA
                     DDVAARVLAVEHKLYPKAVADFAAGRLIIEGNRVRNSENADAARFLTA"
     gene            complement(8078..8896)
                     /locus_tag="WHR98_000817"
     CDS             complement(8078..8896)
                     /locus_tag="WHR98_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEZ2307519.1"
                     /translation="MNTIFKISALTLSAALALSACGKKEAAPASASEPAAASAAQGDT
                     SSIGSTMQQASYAMGVDIGRSLKQMKEQGAEIDLKVFTEAMQAVYDGKEIKMTEEQAQ
                     EVMMKFLQEQQAKAVEKHKADAKANKEKGEAFLKENAAKDGVKTTASGLQYKITKQGE
                     GKQPTKDDIVTVEYEGRLIDGTVFDSSKANGGPVTFPLSQVIPGWTEGVQLLKEGGEA
                     TFYIPSNLAYREQGAGDKIGPNATLVFDVKLVKIGAPENAPAKQPAQVDIKKVN"
     gene            complement(9155..9595)
                     /locus_tag="WHR98_000818"
     CDS             complement(9155..9595)
                     /locus_tag="WHR98_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HEZ2307520.1"
                     /translation="MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQEL
                     DKMLWQYEAESFIPHEIWETEEAMPSEPSVLLACGGNLPRIPEGMTVLNLSDGFWNTA
                     PVLPARVLEIVGNSLEDLADARERFTAYRRSGFAIEHHSMEGKA"
     gene            complement(9658..11064)
                     /locus_tag="WHR98_000819"
     CDS             complement(9658..11064)
                     /locus_tag="WHR98_000819"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEZ2307521.1"
                     /translation="MEFSTKTEILQEQQAGAQLFVCTEEAQLNHPTALALLSSLEEGQ
                     NFADTKIPTGNGLQAVAVCCLKSTGRAALNKAAAEAAKWAQNQETVNVDVHVFEEAQA
                     AAVAEAFAIAFGNAAYRFDRYKKEAKPAKFETAVFHSAHEAAVKEALRVAEAQVYGQS
                     LCRDLGNAAPNECTPEFLARTAKAEAEKLGAHAKIIEKDYIKENMGSFWSVAKGSVED
                     PYLVELSYFGAADKEAAPVVLVGKGITFDTGGISLKPGLNMDEMKFDMCGAATVISTF
                     CAAVKLQLPINLIAVVATCENMPSGAANKPGDVVKSMKGLTIEVLNTDAEGRLILCDA
                     LTYAEQFKPKAVIDVATLTGACIVALGHDVSGVMGNNQDLIDSLLAASYNVDDKAWQL
                     PLFETYKDQLKSNFADIPNIGTPGAGTITAATFLSYFTEDYPWAHLDIAGTAWKSGAE
                     KGATGRPVPLLLNYLRNL"
     gene            11234..12349
                     /gene="lptF"
                     /locus_tag="WHR98_000820"
     CDS             11234..12349
                     /gene="lptF"
                     /locus_tag="WHR98_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HEZ2307522.1"
                     /translation="MIYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVA
                     IDAVLALVGFWVIGMTPLLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPV
                     MQFAVPFAVLVAVMQLWVIPWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVY
                     FVETFDTESGIMKNLFLREQDKNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPG
                     RADYNQVSFQKLNLIISTTPKLIDPVSHRRTIPTAQLIGSSNPQHQAELMWRISLTVS
                     VLLLCLLAVPLSYFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLP
                     MHIIMFVIAIVLLRVRSMPSQPFWQAVGKSLTLKGGK"
     gene            12346..13416
                     /gene="lptG"
                     /locus_tag="WHR98_000821"
     CDS             12346..13416
                     /gene="lptG"
                     /locus_tag="WHR98_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010358669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HEZ2307523.1"
                     /translation="MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSY
                     GIWEMLGYTALKMPARAYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLI
                     LSQFGFIFAIATVALGEWVAPTLSQKAENIKAAAINGKISTGNTGLWLKEKNSIINVR
                     EMLPDHTLLGIKIWARNDKNELAEAVEADSAVLNSDGSWQLKNIRRSTLGEDKVEVSI
                     AAEENWPISVKRNLMDVLLVKPDQMSVGELTTYIRHLQNNSQNTRIYAIAWWRKLVYP
                     AAAWVMALVAFAFTPQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLA
                     GALPTIAFALLAVWLIRKQEKR"
BASE COUNT         2947 a         3696 c         3604 g         3243 t
ORIGIN      
        1 cgtctgaaaa cggggcggcg gggtgtccgt acggcattaa ccgcatccct gccgactgag
       61 ggaaaaccct gcctgcccga tcaaaccagg cggttgtgaa gcaaaagcct ttcagacggc
      121 atcggtttaa cgtaccgacc acgcggcaac ggcatcggca aacattgccg ccacatcgaa
      181 gcctttttgt ttcataattt cttggaatcc ggtcgggctg gttacgttga cttcggtcag
      241 gttgctgccg ataacgtcca aaccggccag caggatgccg cgccgtttga gttcgggggc
      301 gagcgtttcg gcaatttcgc ggtcgcgttc gctcaattcc tgcgccacgc cgcgcccgcc
      361 tgccgcaagg ttgccgcgtg tttcgccgtt ttgaggaata cgcgccaaag cataggggac
      421 gacttcgccg ccgataatca ggatgcgttt gtcaccgtgt acgatttcgg gaatgtagcg
      481 ttgcgccata atggtgcggg aatcaagctg catcagggtt tcgaggatgc tgccgatgtt
      541 ggggtctttt tcggtcaggc ggaagatgcc cataccgccc atgccgtcga gcggtttaat
      601 gatgatgtcg ccgtgttctt tcaaaaatgc gcggacatcg gcggaacggg tcgttaccag
      661 cgtgggcgcg gtaaagcggc tgaagttcaa aatcgccagt ttttcattga aatcacgcat
      721 cgcctgtccg ctgttaaaga ccttcgcgcc ctgctgctcc gccagcgtca gaagctgtgt
      781 ggcgtagagg tattgcatat cgaacggcgg atcggtacgc ataatcacgg catcaaatgc
      841 ttccaatgcc gtctgaactt tgtcggcggc ggcaaaccag tttttgtcgt ggtcgtcttg
      901 tgcgccgaga aactcaaaag cagacgcatc agcaaccacc agaccgtttt taaccgacaa
      961 tccgctgctc aaggtatgaa acagccgcca gccgcgtttt gccatctcgc gcatcatggc
     1021 gtaggtggtg tctttgtagg ttttgaaact tgccatcggg tcggcgataa agaggacttt
     1081 catcatattt cctttccggt gtgccgaatg tgccgcattt cgcgggcaaa ggggaaatgc
     1141 cgtccgaaca atattcagac ggcaaggatg gggttttact taggctgcca agaatctttc
     1201 agcgtgaccg tgcggttaaa caccggcgtg tctttgccgt ggtctttacg gtcggttacg
     1261 aagtagccga tacgctcgaa ctgccaacgg ctttctgccg gcaaatcttt ggcggcaggt
     1321 tcggcgtagg cggtgatttc cttgacggat tccggattga ggaaatcggt gaacggcagg
     1381 tattcgccgt cttcgccgcg cacggcatcg ggacgctcga cggtaaagag gcggtcgtac
     1441 agacggactt tgatttcggc ggcgtgttcg gcggaaaccc aatgaatcac gcctttaact
     1501 ttacggcctt ctggattttt gcccaaggtg tcgtggtcga tgctgcattt gagttcaacc
     1561 acattgcctg cttcgtcttt gacgacttca tcgcacttga tgacatagcc gtggcgcaag
     1621 cgtacttcgc cgccgggaat caggcgtttg aagcctttgg gcggattttc ggcaaagtcg
     1681 tcggcttcga tgtaaatggt ttgtgaaaca ggtacttcgc gatcgcccat ttcttcgtgg
     1741 ttcggatgga acgcggcacg gcggctttgg gttctgccgg tttcaaagtt ggtcagggtt
     1801 actttgagcg ggttcaacac cgccatcagg cgtggggcgg aattttccaa ctcttcgcga
     1861 atcgcgcctt ccaacacgct catatcgacg atgttttcag atttggaaat accggcgcgt
     1921 ttggcaaaca ggcgcagccc ttcgggcgtg tagccgcgtc ggcgcatacc ggaaatggtc
     1981 ggcatacgcg gatcgtccca gccggaaacg tgtttttcca caaccaactg attcaatttc
     2041 cgtttggagg taatggtgta caaaagctcc aagcgtgaaa actcgtattg gcgcggacgt
     2101 gtggcgtgcg gcgcggggat gttgtccaac acccagtcat acagcggacg atgggcttca
     2161 aattcgagcg tacacaagga atgcgtgatg ccttcgatgg catcggaaat acaatgcgtg
     2221 tagtcgtaca tcggatagat gcaccatttg tcgccggtgt tgtggtgatg ggcgcggcgg
     2281 atgcggtaga tgaccggatc gcgcatattg atgttgccgg atgccatgtc gattttcagg
     2341 cgcagggttt tgctgccgtc ggggaactca ccgtttttca tgcgcgtgaa caggtcgagg
     2401 ttttcttcga tactgcggtc gcgataaggg ctgtttttgc ctgcttcggt cagcgtaccg
     2461 cggtattcgc gcatttcttc tggcgtcaaa tcatcgacat acgctttgcc gtctttaacc
     2521 aaaccgacgg cgtagtcata aagctggtcg aaatagttgg aagcgaaacg cggctcgccc
     2581 gcccaatgga aaccgagcca ctcaacgtct tctttgatgg cgttgacgta ttcgtcgttt
     2641 tctttttcgg ggttggtatc gtcaaaacgc aggttgcaca agccgtcgta aatatacgcc
     2701 aaaccgaagt tcaggcagat ggatttggcg tgtccgatgt gcaggtagcc gttgggctcc
     2761 ggcggaaaac gggtttggac ggcttcgtgt ttgccgcttt tgaggtcttc ttcgatgaag
     2821 gtgcggataa aatggttgtc cgcaaattgg tctttattga gcatagtttt ctttgaacag
     2881 atggcttcag acggcattgg ggcggttcct tatgccgtct gaagcggttt gatgatgtgt
     2941 ttattgtacc cgacttgcgc gctttgacat agcgttcaga cggcatcggc aatcaggcat
     3001 tccacccccg cctctttcag catcttctgc atcgcggtat cgggcagccg gtcggtaaat
     3061 actttgtcaa acgccgtaat gtcgccgagc ctgaccagcg cgttgctgcg gaatttactg
     3121 tggtccacgc cgaggaagcg gacgcgcgca ttggcaatca tcgcctgcat cacgctgact
     3181 tctttgtagt cgtcgtccaa aagcgaaccg tcgctttcca cgccgtgcgt actcatcacg
     3241 gcataatcga ctttgaactg gttgataaaa tcgacggttg ccacgccggt aataccgccg
     3301 tccaaagggc ggacgactcc ggaagtgata atgaccgtgt aatccgtccg cgccgaaacg
     3361 atggaggcga cgtggatatt gttggtaata atccgcaggc tgccgcgccg cctgaccagc
     3421 tccgatgcca cggcttccat cgtcgtgccg atactgacaa acagcgacga accgtcgggg
     3481 atgtgttccg caatcagccg ggcaatggcg tttttttcgt tttgacaccg ggtttggcgg
     3541 tcggcgggca ggccctccgg caagtttccg cccgaagatg cgccgccgtg atggcgtttc
     3601 aggctgccgg cctcctccaa ctcgcggatg tcgcggcgta tcgtctgcgg ggtaacgtcc
     3661 aatgcggcgg caagctcgtc caccgacata aactgatgcc ggcggacaag gcttaaaatc
     3721 tctccgtgcc tttggatttt cggtttcatc gttttctgcc tccttgcatc gggatgccga
     3781 ttttaccgtg ttcagcccag cgtggaaaac accaccatca gaaacggggc ggcgatattg
     3841 accaccacgc cgaagctgac cgctaccggc acgacttcca aaccgcccgc accctgaatc
     3901 acgggcaatg taaaatccat actggtcgca ccgccaaccc ccaccgccgc atccggaaaa
     3961 cgcttcatca gcagcgggat aaatgccagt gcaaacagct ctcgtgccaa atcgttcagc
     4021 agcatgatgc tgccccatac cgcgccgtaa gcctcggtca tgaccaaacc cgagagggaa
     4081 taccaaccga agccggaagc catcgccaaa cctttcgtcc acgacacacc gtctgtcgat
     4141 gcggcaaaca gcagcccgcc cgaaagagat gaaagcataa accagaccga caaccgaata
     4201 cccctgcggt tgaccaaaac ctgccgcaac gatacgccgc tgcttttgag ctgtacgccg
     4261 atgaggaaca ccagcagcat cagacaatac atgcccgcgc tttcagacgg catccaaata
     4321 tcgcgcatca gtttgccgaa tgcaaatccg agcagcacgc atccgagctg ccccacactg
     4381 cccgacacgc cgaccgaaac gcccttccct ttccccttta tccgccacgg gaataacttt
     4441 cccaacactg ccaaagcaag caggttcgcc ccgaccgtac aaacaaacag ccacagaacc
     4501 gtcaacgcca tatcgtccaa ccgcgaaccc aaatcctcca cgcgcgacaa cgatacgccg
     4561 atcagcagca gcacggcata caccaagacc gatagcacct tatccaaagc gggcaggtaa
     4621 ggcttgggca cacggataaa aaatccggca aacatcggta tcaataccga aagcaatgtc
     4681 atcaggctgt ccatctactg ctctccttta ttgccgcatg atatgtgcgg tttaaaaatt
     4741 gccgtctgaa aattgcagat acccgcatcc atatttcaga cggcatcagg ttcgccatta
     4801 aaaaaccgcc tgaaggttca ggcggcttat ccgctccggc attcaatctt ccaaagtctt
     4861 ttccaaacgc tccatacagt tgcccaaatg gcggcgcagg attttgacca cgcggttgcg
     4921 cctgcccgcc agcagcaggt cgaggatttc gcggtgttcg gaatgcgtat gcgtattgat
     4981 ggcgtgtttt tcctcgcgat gcacgcccgc cacggcgaca atcagggaag accgcgcgca
     5041 cagcgtgttc ataatgtcga acagcacatc gttgcccacc aggcgcgcca gttcgacgtg
     5101 gaaggcattg gacaggcggt tccagccgac gcggtcgccc ctgccggaag cctcttcttc
     5161 gcgccttatc atcgcataaa gcggcttgag gcgcgtttcc aaatccggca aatctgcgag
     5221 gatgttcaaa atcatcgtct ccatttcgat gcgcgcattg aacacatcct gcatttcttt
     5281 caaatcggga acgtggacga acgcgcccct gttgggttgc aaatcgacaa tcttgtcgtg
     5341 cgccaaaagc gacagcgcgc cgcggacggt gttgcgcgaa cacaccatct ggcggcaaag
     5401 ttcggactcg gtcagctttt tgccgggcag cagcacctga tcggtaatgc cgtccaaaat
     5461 cagggcgtaa acacggaaca gctccgaatc gtgccgctct tcgagaatca gggaagacgt
     5521 ggtcggcgca tggataatgt cgtcgttttc aaagttcatg atgttttccg tatttttacg
     5581 ctttcaaatt ttttaagatg ttttaaggcg gctgtgtttc aaatcgtgtc ggggaaatta
     5641 aagcattgca caaatttatt ttatagtgga ttaacaaaaa tcaggacaag gcgacgaagc
     5701 cgcagacagt acaaataatt cacttggtgc ttcagcacct tagagaatcg ttctctttga
     5761 gccaaggcga ggcaacgcca tactggtttt tgttaatcca ctataattca ataaattaat
     5821 atatggctta aaataacagg atgcccgcct tccgcccgcc cgcagaagca ggcgggtatc
     5881 attttaaaac gcggcattta aaatttgacc gaaaattgtt gacaatccgg aatcaagtct
     5941 gcacaatacc ccgacaagtc caagtattat aaaggctgaa taaagaggaa acagcaggca
     6001 gatatattcg ggaggtgcag tccgaatata tctgcttttt tatgcgcctc cggcttgcct
     6061 gccgcacctt tccccttcag acggcatcag ccgtttctcc ataatgccgc ccgatgccta
     6121 tttatctgcc ccggcaattt caaaactgtg ggtaatcttt gccgctttgc ccaacataat
     6181 cgaagccgaa cagtattttt cggcagacat ctgaacggcg cgctcaatgg ccgattcttt
     6241 caaatcatgc ccgaatactt tgaaatggat gtggatttcg gtaaacacgc gcggcgcatc
     6301 gtccgcccgt ttcgccgtaa ccgtcgcacg gcagtcagtc actttctgac gctgtttttc
     6361 ggcaatcatc accacatcga tgctcgaaca gcccgccacg cccaacagca gcatttccaa
     6421 agggctgggc ccgcgcttgg ccgcaccttc tgccgccgaa ccctccataa cgacgctgtg
     6481 cccgccttcc gtcgtgccga caaagcacat tccgtctatc cattttgatg taacctgcat
     6541 ggtgtcattc ctgaaaatag cgttaaaacc gctttgcata tggcgttatt gtaaacaatt
     6601 tcaagcggct tatgcagaaa tatggacaaa acggcaaaaa aacacttgaa aaccgattta
     6661 cggtttggcg gactggccgt tgatctgcac cgatttgagt ttcagcgtat aggttttgcc
     6721 gtcgtcggta tagccgattt gtgccggaat attgttcagg gacggtgcga agaaatacat
     6781 taccgtatcg tcgccgcgcc gcacccgata tttgacgact tcggtttcca cgccgcctat
     6841 gctgtatttt cctgtacccg ccttattcaa accgccgacg gaataaagtt ttttgccgtt
     6901 ggtgattttc agccccgagg ggagtttcgc gtcatttgcc gccaactgcc aggcaagcgt
     6961 gaacaaatcc atagccttgg ggctttgctc ggttttgctc tcgcccgctt tgccgtaggt
     7021 tacgctgccg tcggcgaatt tggcttccgc atacagtttg cccctgcgta tgtctctata
     7081 gtaggtaggg tgcagggtat tgccgacaac cgtaccgccg gactcgaaac ggatattgta
     7141 tagcggcact ttaatcgtcg aaacgatttt gtaagcattg ccgctgcgtt caaatgtcat
     7201 cgtggcggga atgccgtagc tgccggaata gtgcagcacg gcggattggg gcagccctgc
     7261 cgcatacgcg cacggcaggg cggcggacaa aatggcggcg gaaaatatat ttttaaaagt
     7321 cttcatcatt tgctcccgcc cggtttacgc cgtcaggaaa cgggcggcat cggcgttttc
     7381 cgaatttctg acgcggtttc cctcgataat caggcggccg gcggcaaaat cggcaacggc
     7441 tttcggataa agtttatgct caacagccaa aacccgggcg gcaacatcgt ctgccgtatc
     7501 gccgtcgagt atcggcacaa tcccttgcga tacaatcggg ccgcaatcca gttcggcagt
     7561 aacgaaatgg atggtgcagc cggcaacgcg gcagcccgcc tccaaagcgc gttcgtgcgt
     7621 atgaagtccg gtaaacgagg gcaggacgga cgggtgaatg ttcatcagcc tgccttcgta
     7681 atgggcacag aactcagggg tcagaatccg cataaaacct gccaaaacca ccaagtcggg
     7741 ttgatatgcg tcgatttttt ccatcatggc ggtatcgaag gcaagtcgtg attcaaagtt
     7801 tttatgattc aggctgtcgg tcggaatacc ctgaccggcc gcccattgca aaccggcagc
     7861 cgtttcgctg ttgctcaaca cggcggcaat acggacgttg ggaatggcgg cattgacgat
     7921 tgcctgcata ttgctgccgc gtccggaaat caggatgacg atgtttttca taatggtgcg
     7981 cttttgaaag ggatgccatc tgaaccgctg tttggtggtt tcagacggca tttgccgtaa
     8041 aaatgcccga aaacctgttt cgggcatgga ttcggactta atttactttt ttgatgtcga
     8101 cttgagccgg ctgcttggcg ggcgcgtttt cgggtgcgcc gattttgacc agtttcacat
     8161 caaataccaa agtggcgttc gggccgattt tgtcgcccgc accctgttcg cggtaggcaa
     8221 ggttggacgg gatgtagaac gtggcttcgc cgccttcttt cagaagctgt acgccttcgg
     8281 tccaacccgg aatcacttgg ctcaaaggga aggtgaccgg gccgccgttg gctttgctgc
     8341 tgtcgaatac cgtaccgtca atcaggcggc cttcgtattc cacggtaacg atgtcgtctt
     8401 tggtcggctg tttgccttcg ccctgtttgg tgattttgta ttgcaggccg gaagcagtgg
     8461 tcttcacgcc gtctttggcg gcattttctt tcagaaaggc ttcgcctttt tctttattgg
     8521 ccttcgcgtc cgccttgtgt ttttctacgg ctttagcctg ttgttcctga aggaatttca
     8581 tcatgacttc ctgagcctgc tcttcagtca ttttgatttc tttgccgtca tacactgcct
     8641 gcatggcttc ggtaaagact ttcaaatcga tttccgcacc ctgttccttc atttgcttca
     8701 gggagcgtcc gatgtccacg cccatcgcat agcttgcctg ctgcatcgtg ctgccgatcg
     8761 aagaggtgtc gccctgcgcg gcagaagcgg cggcaggttc ggatgcagat gcgggggcgg
     8821 cttctttttt gccgcaggcg gaaagtgcca aagcggcgga aagggtcagt gcgctgattt
     8881 tgaaaatggt gttcatgatg gatcttcgct gtcgataagg tcggaaaaac gggattatag
     8941 ccgagtttga atgtttcaac acacaggatg acacataaag cgtcaatcgt gtgttgccct
     9001 gttttggaag ggattgaacc ttccaaaata agttttgatt ctaccgcccc gagggacaga
     9061 tgtccaagtg gcggggttca accgataagg aaattttaat caaatagaat caagcctgtt
     9121 taaattttgt aaatgcggca tttcagacgg cattttatgc cttgccctcc atgctgtgat
     9181 gttcgatggc aaaaccgctt cggcggtaag cggtaaagcg ttcgcgcgcg tcggcgagat
     9241 cttccaagct gttgccgacg atttccaaaa cgcgcgcggg caagaccgga gcggtgttcc
     9301 aaaaaccgtc ggacaggttc aaaacggtca tgccttcggg aattcggggc agattgccgc
     9361 cgcaggcaag caggacggat ggttcagacg gcatggcttc ttccgtttcc caaatttcgt
     9421 gcggaatgaa actctcggcc tcgtattgcc aaagcatttt gtccaattcc tgaagctgcc
     9481 cgaacgaatc ggaccacacc agtatcctgc cgccgtcccg aatcgcacgg gcaatcaggc
     9541 ggcaggtgaa aatcggaact tgggcaacgt gcgtgtaaaa ggtggctttc ggcatattgt
     9601 ttgaacattt ggcaggataa tgccgtctga aaggcttcag acggcattgt ggcaaaatta
     9661 aagattccgc agatagttca gcagcaaggg aacgggacgg ccggtcgcac ctttttccgc
     9721 accggatttc cacgccgtac ccgcgatgtc aaggtgtgcc catggatagt cttcggtaaa
     9781 gtaggatagg aatgttgcgg cggtaatcgt gcccgcgccg ggcgtgccga tgtttggaat
     9841 gtcggcaaag ttggatttga gttggtcttt gtaggtctca aagagcggca gttgccatgc
     9901 tttgtcgtcc acgttgtagg aagcggcaag caggctgtcg atcaaatcct gattgttgcc
     9961 catcacgccg ctgacatcgt gccccaaggc aacaatacac gcgccggtca gggtggcgac
    10021 gtcgatgacg gctttgggtt tgaactgctc ggcgtaagtg agcgcgtcgc acaaaatcag
    10081 acggccttcg gcatcggtgt tcaacacttc gatggtcaga cctttcatac ttttcacgac
    10141 atcgcccggt ttgtttgccg cgccggaagg catattttca caagtggcga cgacggcaat
    10201 caggttaatc ggcagttgca gtttgacggc ggcgcagaag gtgctgatga cggttgccgc
    10261 gccgcacata tcaaacttca tttcgtccat gttcaggccg ggtttgaggg aaatgccgcc
    10321 ggtgtcgaag gtaatgcctt tgccgaccaa taccacaggc gcggcttctt tgtcggctgc
    10381 accgaaatag ctcagttcga ccaaataggg atcttcgacg ctgcctttgg cgaccgacca
    10441 gaacgaaccc atgttttctt tgatgtagtc tttttcgatg attttggcgt gcgcgcccag
    10501 tttttcggct tcggctttgg cggtgcgcgc taaaaattcg ggcgtgcatt cgttgggcgc
    10561 ggcgttgccc aagtcgcggc agaggctttg tccgtaaact tgcgcttcgg cgacgcgcaa
    10621 ggcttcttta acggcggctt cgtgtgcgct gtggaacacg gcggtttcaa atttggcggg
    10681 cttggcttct tttttgtagc ggtcgaaacg gtaggcggca ttgccgaacg caatcgcaaa
    10741 cgcttcggca acggctgcag cctgcgcttc ttcaaagacg tgaacgtcca cattgaccgt
    10801 ttcctgattt tgcgcccatt tggcggcttc ggcggcggcc ttgttcaatg cggcgcggcc
    10861 ggtgcttttc agacagcata cggcaacagc ctgcaaaccg ttgcctgtcg ggatttttgt
    10921 gtcggcaaaa ttttgacctt cttcaagcga agacaaaagg gcaagggcgg tcggatggtt
    10981 taattgcgcc tcttcggtgc agacaaataa ctgtgcgcct gcctgctgtt cctgcaagat
    11041 ttcggttttt gtgctaaatt ccacgtttat tctcctgatt gagacggttg tcggtagttt
    11101 tcggacggcc tttcgctcaa aagaccgtct gaagacggct ggcacgattg taccccattt
    11161 gaagcaccgt ctgaaacctt gcgcggacaa tccgcctgcg ccgaaccgct taccgccccc
    11221 tgaccgcgat tctatgattt atcaaagaaa cctcatcaaa gaactctctt ttaccgccgt
    11281 cggcattttc gtcgtcctct tggcggtatt ggtctccacg caggcaatca acctgctcgg
    11341 ccgtgccgcc gacgggcgtg tcgccatcga tgccgtgttg gcattggtcg gcttctgggt
    11401 catcggtatg acgccgcttt tgctggtgtt gaccgcattt atcagtacgt tgaccgtgtt
    11461 gacccgctac tggcgcgaca gcgaaatgtc ggtctggcta tcctgcggat tggcattgaa
    11521 acaatggata cgcccggtga tgcagtttgc cgtgccgttt gccgttttgg ttgccgtcat
    11581 gcagctttgg gtgataccgt gggcagagct acgcagccgc gaatacgctg aaatcctgaa
    11641 gcagaagcag gaattgtctt tggtggaggc aggcgagttc aacagtttgg gcaagcgcaa
    11701 cggcagggtt tattttgtcg aaaccttcga taccgaatcc ggcatcatga aaaacctgtt
    11761 cctgcgcgaa caggacaaaa acggcggcga caacatcatc ttcgccaaag aaggtaactt
    11821 ctcgctgaac gacaacaaac gcacgctcga attgcgccac ggctaccgtt acagcggcac
    11881 gcccggacgc gccgactaca atcaggtttc cttccaaaaa ctcaacctga ttatcagcac
    11941 cacgccaaaa ctcatcgacc ccgtttccca ccgccgtacc attccgaccg cccaactgat
    12001 tggcagcagc aacccgcaac atcaggcgga attgatgtgg cgcatctcgc tgaccgtcag
    12061 cgtcctccta ctctgcctgc ttgccgtgcc gctttcctat ttcaacccgc gcagcggaca
    12121 tacctacaat atcttgattg ccatcggttt gtttttaatt taccaaaacg ggctgaccct
    12181 gctttttgaa gccgtggaag acggcaaaat ccatttttgg ctcggactgc tgcctatgca
    12241 catcatcatg ttcgtcatcg caatcgtact tctgcgcgtc cgcagcatgc ccagccagcc
    12301 cttctggcag gcggttggca aaagtctgac attgaaaggc ggaaaatgaa cctgatttca
    12361 cgttacatca tccgtcaaat ggcggttatg gcggtttacg cgctccttgc cttcctcgct
    12421 ttgtacagct tttttgaaat cctgtacgaa accggcaacc tcggcaaagg cagttacggc
    12481 atatgggaaa tgctgggcta caccgccctc aaaatgcccg cccgcgccta cgaactgatg
    12541 cccctcgccg tccttatcgg cggactggtc tctctcagcc agcttgccgc cggcagcgaa
    12601 ctgaccgtca tcaaagccag cggcatgagc accaaaaagc tgctgttgat tctgtcgcag
    12661 ttcggtttta tttttgctat tgccaccgtc gcgctcggcg aatgggttgc gcccacactg
    12721 agccaaaaag ccgaaaacat caaagccgcg gccatcaacg gcaaaatcag caccggcaat
    12781 accggccttt ggctgaaaga aaaaaacagc attatcaatg tgcgcgaaat gttgcccgac
    12841 cataccctgc tgggcattaa aatctgggcc cgcaacgata aaaacgaact ggcagaggca
    12901 gtggaagccg attccgccgt tttgaacagc gacggcagtt ggcagttgaa aaacatccgc
    12961 cgcagcacgc ttggcgaaga caaagtcgag gtctctattg cggctgaaga aaactggccg
    13021 atttccgtca aacgcaacct gatggacgta ttgctcgtca aacccgacca aatgtccgtc
    13081 ggcgaactga ccacctacat ccgccacctc caaaacaaca gccaaaacac ccgaatctac
    13141 gccatcgcat ggtggcgcaa attggtttac cccgccgcag cctgggtgat ggcgctcgtc
    13201 gcctttgcct ttaccccgca aaccacccgc cacggcaata tgggcttaaa actcttcggc
    13261 ggcatctgtc tcggattgct gttccacctt gccggacggt tcttcgggtt taccagccaa
    13321 ctctacggca tcccgccctt cctcgccggc gcactaccta ccatagcctt cgccttgctc
    13381 gctgtttggc tgatacgcaa acaggaaaaa cgttgaacca atgccgtctg ccccccttcg
    13441 gacggcattg gtttttatta tcatattccc gcagacagat agccgttccc
//
LOCUS       DAWGNT010000039        13452 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.039, whole genome shotgun sequence.
ACCESSION   DAWGNT010000039 DAWGNT010000000
VERSION     DAWGNT010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13452
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.039"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(108..536)
                     /locus_tag="WHR98_000822"
     CDS             complement(108..536)
                     /locus_tag="WHR98_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01244 family phosphatase"
                     /protein_id="HEZ2307524.1"
                     /translation="MAILKLDEHLYISPQLTKADAEQIAQLGIKTVICNRPDREEESQ
                     PDFAQIKQWLEQAGVTGFHHQPVTARDIQKHDVETFRQLIGQAESPVLAYCRTGTRCS
                     LLWGFRRAAEGMPVDEIIRRAQAAGVNLENFRERLDNARV"
     gene            complement(601..2349)
                     /locus_tag="WHR98_000823"
     CDS             complement(601..2349)
                     /locus_tag="WHR98_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M61 family metallopeptidase"
                     /protein_id="HEZ2307525.1"
                     /translation="MIHYKITPSPLDHEWHILLTFTQDDDLPIEISLPNWVPGSYLIR
                     DFSRHITSIHASCNGTSMPLEQIAKNRWHAAAVRGEWQIRYTVYAFDLSVRGSFLTTE
                     RGFFDGSCLFLKVEGTETLPHRLELTGIPSEWRIATTLPETGRFVFQAASYAELIDRP
                     VEMGLIEFLDFEAAGIPHTIALSGIYPDFDRNRLVSDIKKICETELAVFSSPAPFQKY
                     LFLLHVGDHIYGGLEHTDSTALLADRHSLPPYGMTDADDTYTTLLGLFSHEYFHAWNV
                     KSIKPAAFVPYDLDKENYTEQLWAFEGITSYYDDLFLARSRTISPESYLNLLAQGITR
                     VQQTRGRLRQTLAESSFTAWNKFYKPDENSPNAIVSYYQKGALAALCLDLIIRNRSNG
                     RHSLDTLMDKLYREWRDTHSGIPEKHWQIRCQEITGLDLEDFFQKALYSTEDLPLAEC
                     LATAGVGLTFLPLPRQHGGGYAEHICPVPPAGDFGARFKQNTDHIVLTHVFNSGSAES
                     AALCPQDKIIALDGYACTDFTAQWARYHVNAKINIHFFRAGILRQTVLTVQAAAADTA
                     ILHITDRNLLDNWLFG"
     gene            2676..4109
                     /gene="ccoN"
                     /locus_tag="WHR98_000824"
     CDS             2676..4109
                     /gene="ccoN"
                     /locus_tag="WHR98_000824"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEZ2307526.1"
                     /translation="MDTQTYNYKVVRQFAIMTVVWGIVGMLVGVIVAAQLFAPALDLS
                     NIGPWFHFGRLRPLHTNAVIFAFGGCGLIGTSYYVVQRTCNTRLFGGWLPAFTFWGWQ
                     AVIVAAVVSFPMGWTQGKEYAELEWPIDILITLVWVAYAIVFFGTIAKRKIKHIYVAN
                     WFYGGFILAVALLHIVNNISIPAGLMKSYPVYSGAIDAMVQWWYGHNAVGFFLTAGFL
                     GMMYYFVPKQAARPVYSYRLSVVHFWALIFTYMWAGPHHLHYTALPDWTQSLGMVLSL
                     ILFAPSWGGMINGIMTLSGAWDKLRTDPILKFLIVSLSFYGMSTFEGPMMSIKTVNAL
                     SHYTDWTVAHVHAGALGWVGFVTIGSVYYMIPRLFGKEQMHSTKLVEAHFWIATIGVV
                     LYIAAMWIAGVMQGLMWSSLNDDGTLTYSFVESVKRTMPYYVIRFAGGLLYLSGMCIM
                     AYNVYRTAIGGKAVDAEIPAVSQTQHH"
     gene            4136..4747
                     /gene="ccoO"
                     /locus_tag="WHR98_000825"
     CDS             4136..4747
                     /gene="ccoO"
                     /locus_tag="WHR98_000825"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEZ2307527.1"
                     /translation="MKLQQLAEEKIGVLIVFTLLVVSVGLLIEVVPLAFTKAATQPAP
                     GVKPYNALQVAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSVAGESVYDHPFQWGS
                     KRTGPDLARVGGRYSDEWHRIHLLNPRDVVPESNMPAFPWLARNKVDVDATVANMKAL
                     RKVGTPYSDEEIAKAPEALANKSELDAVVAYLQGLGLALKNVR"
     gene            4752..4922
                     /locus_tag="WHR98_000826"
     CDS             4752..4922
                     /locus_tag="WHR98_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcoQ/FixQ family Cbb3-type cytochrome c oxidase
                     assembly chaperone"
                     /protein_id="HEZ2307528.1"
                     /translation="MDINGIRALFTVWIFICFLLVLYIVFNRRNKKNYDNAANSIFDE
                     NQDAQDKKSENR"
     gene            4946..6043
                     /gene="ccoP"
                     /locus_tag="WHR98_000827"
     CDS             4946..6043
                     /gene="ccoP"
                     /locus_tag="WHR98_000827"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit III"
                     /protein_id="HEZ2307529.1"
                     /translation="MNTTSQFTSNFWNIYIAVIVLLSFIALAWLLLSQNVVKRPKKGE
                     EVQTTGHEWDGIAEYDNPLPRWWFWLCVLTWLFGIGYLVMYPGVGDYKGLLKWTSHNQ
                     YEKEVKKADEQYGKLYAKFADMPIEKVAKDPQAKQIAQNLFNTYCIQCHGSDAKGSKG
                     FPNLTDSDWLWGGDPDKIHETIEKGRVATMPAWGPALGEEGVKDVAHYVMSLSKPEGQ
                     YDEERAARGQALFSGPPANCFTCHGDKGQGIQGLGPNLTDDVWLWGGTQKSIIETITN
                     GRSSQMPAWGHFLDKDKLHIMTAYVWGLSDKDGKAPVKKAEPAPTPAPAAEPAASAPA
                     EAAQAASEAKPAAAEPKAEEKAAPAAKADGK"
     gene            6083..6277
                     /locus_tag="WHR98_000828"
     CDS             6083..6277
                     /locus_tag="WHR98_000828"
                     /inference="COORDINATES: protein motif:HMM:NF024834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5 family protein"
                     /protein_id="HEZ2307530.1"
                     /translation="MPGIPHVGIKADWADRIKKGKDTLHKHAIEGFNTMPAKGGRGDL
                     SDDEVKAAVDYMVNQSGGKF"
     gene            6479..7888
                     /locus_tag="WHR98_000829"
     CDS             6479..7888
                     /locus_tag="WHR98_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEZ2307531.1"
                     /translation="MDTQIKTEADNQSNRRYLTVWRWHFYAGLLVMPFLTLLAVTGLG
                     MLLFANITGKEGERIHVVPQATVQPLSVQAEAARSAVNPETSSVVQYIAPRADDMVAV
                     FRVNNEGKATMVAVDPYTAKVVSTMPRNQGWYYAMDEIHSDMMLGSTGDYLLETAASL
                     TIIMIISGLYLWWVKRRGIKAMLLPPKGRARSWWRNLHGAFGTWVSLILLLFCLSGIA
                     WAGIWGGKFVQAWSQFPAGKWGVEPNPVSVVPTHGEVLNDGKVKEVPWVLELTPMPVS
                     GTTVGKDGINPDEPMTLETVDRFAREIGFKGRYQLNLPKGEDGVWTLSQDSMSYDMIS
                     PFADRTVHIDQYSGKILADIRFDDYNPFGKFMAASIALHMGTLGWWSVLANVLFCLAV
                     IFIGISGCVMWWKRRPSGAVGMVPPAQKIKLPVWWAMAVPLLLIALLFPTALVAIAVI
                     WLLDTLLLSRIPVLRKWFK"
     gene            7989..11198
                     /gene="recC"
                     /locus_tag="WHR98_000830"
     CDS             7989..11198
                     /gene="recC"
                     /locus_tag="WHR98_000830"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HEZ2307532.1"
                     /translation="MFYLYQSNRLETLAALFAHIQKVKPLKSALQPEQIIVQSQGMRR
                     YLNTCLARDLGVAANLAFSLPASLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSE
                     AFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
                     LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYL
                     QLLHKLSEHCDVFVFALNPSGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGR
                     DFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVS
                     AHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQAL
                     PYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLL
                     HDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADV
                     NQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLETLFQAEADDQKSVQNLE
                     NEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPF
                     KVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLS
                     YIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRRYFQEGG
                     RSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQ
                     QQLAWSEPHIGEAWEPAEPFEPQHADQIAKTYIEARREGRDFSQTAARIGAESLLPSG
                     ELGRLWQQDFQTAAKQIDTAVLNSPKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAY
                     GKPNAPQRIAFLLEHLIFCAVMPSETETRQTFIVQSGETEILAEIAQDRALQLLSEWM
                     AFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYYGNKVSKGQKDYTEVA
                     LVFGNASQNPLEQPLFENLVRLLADTFAAAEKKEEAGAA"
     gene            complement(11268..12836)
                     /gene="mtrF"
                     /locus_tag="WHR98_000831"
     CDS             complement(11268..12836)
                     /gene="mtrF"
                     /locus_tag="WHR98_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041421321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbgT family antimetabolite efflux transporter
                     MtrF"
                     /protein_id="HEZ2307533.1"
                     /translation="MSQTDTQRDGRFLRTVEWLGNMLPHPVTLFIIFIVLLLIASAAG
                     AYFGLSVPDPRPVGAKGRADDGLIHVVSLLDADGLIKILTHTVKNFTGFAPLGTVLVS
                     LLGVGIAEKSGLISALMRLLLTKSPRKLTTFMVVFTGILSNTASELGYVVLIPLSAII
                     FHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDPLLAGITQQAAQIIHPDYVVGPEAN
                     WFFMVASTFVIALIGYFVTEKIVEPQLGPYQSDLSQEEKDIRHSNEITPLEYKGLIWA
                     GVVFVALSALLAWSIVPADGILRHPETGLVSGSPFLKSIVVFIFLLFALPGIVYGRVT
                     RSLRGEQEVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIAVKGATFLKEVG
                     LGGSVLFIGFILICAFINLMIGSASAQWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDS
                     VTNIITPMMSYFGLIMATVIKYKKDAGVGTLISMMLPYSAFFLIAWIALFCIWVFVLG
                     LPVGPGAPTFYPAP"
     gene            13169..13381
                     /locus_tag="WHR98_000832"
     CDS             13169..13381
                     /locus_tag="WHR98_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307534.1"
                     /translation="MKNEIQKIMDKYNPWHEDDFESYEDIAKDVSLMTDKTFIEHYLL
                     EVYSEENGHFDQENIHAMIGEIKNAI"
BASE COUNT         3380 a         3237 c         3561 g         3274 t
ORIGIN      
        1 ctatacccac tgtaaaaacg gagaaggaca gaggacggca gtaaggtttg ccgtcctctt
       61 tttcaagttg cggtggaatg ccgcttgaag gtgttttcgg cttgtaatca gacgcgggcg
      121 ttgtccagcc gctctctgaa gttttccaaa tttacgcctg ccgcttgggc gcggcggatg
      181 atttcgtcaa ccggcatacc ttctgccgcc cggcggaagc cccacaggag ggagcagcgc
      241 gtaccggtcc ggcaataggc aaggacggga gattcggctt gtccgatgag ttggcggaag
      301 gtttcgacat cgtgtttttg gatgtcgcgt gcggtaacgg gttggtgatg gaatccagta
      361 acgcctgctt gttccagcca ctgtttgatt tgggcgaagt cgggttgcga ttcttcttcg
      421 cggtcggggc ggttgcagat gacggttttg atgcccagtt gcgcgatttg ttccgcatcg
      481 gctttggtca gttgcggaga aatatagagg tgttcgtcaa gtttcagaat ggccattttg
      541 tttcctttac tttgcggttg tttttcagac ggcattttgt gtgcaatgcc gtctgaaagt
      601 ttaaccgaac aaccagttgt ccaacaggtt ccggtctgtg atatgtagga tggcagtatc
      661 cgctgccgct gcctgaaccg tcaagacggt ttgacgcaat atgccggcac ggaagaagtg
      721 gatattgatt tttgcattga cgtggtatcg ggcccattgt gcggtaaagt cggtgcaggc
      781 ataaccgtct aaagcaatga ttttgtcttg cgggcacagt gccgcagatt ccgcgctgcc
      841 gctgttgaag acatgggtca ggacgatgtg gtcggtgttt tgtttgaaac gtgcgccaaa
      901 atcgcctgcc ggcgggacgg ggcagatgtg ttctgcgtat ccgccgccgt gttgtcgggg
      961 aagtggcagg aaggtcagtc ccacgcctgc ggttgccagg cattcggcaa gcggcaaatc
     1021 ttcggtactg tataacgctt tttggaaaaa atcttccaaa tccaagccgg taatttcctg
     1081 acagcggatt tgccagtgtt tttccggaat acccgagtgt gtgtccctcc actcccgata
     1141 gagtttgtcc attaacgtat cgagagaatg tctgccgttg cttcggttgc gtattatcag
     1201 atcaaggcac aatgcggcaa gcgcgccttt ctggtagtag ctgacgatgg cgttggggct
     1261 gttttcatcc ggtttgtaaa atttgttcca cgcggtaaaa ctcgattccg ccaaggtctg
     1321 cctcaaacgg ccgcgggttt gttgtacgcg cgtaatgcct tgtgccagca ggtttaaata
     1381 agattcgggc gagatggtgc ggctgcgtgc caaaaacaaa tcgtcgtaat aggatgtaat
     1441 gccttcgaat gcccatagtt gttcggtata gttttctttg tcgaggtcat aagggacgaa
     1501 cgcggcaggt ttgatggatt tgacgttcca cgcgtgaaaa tattcgtggg agaaaagtcc
     1561 gagcaatgtg gtgtaggtat cgtcggcatc ggtcataccg tacggcggaa ggctgtggcg
     1621 gtcggcgagc agggcggtgc tgtcggtgtg ttccaaaccg ccgtaaatat ggtcgccgac
     1681 gtggagcagg aacaaatatt tttgaaacgg ggcaggggag gaaaacaccg ccagttctgt
     1741 ttcgcagatt tttttgatat ccgaaaccag cctgttgcgg tcgaaatcgg gatatatgcc
     1801 gcttaaggca attgtgtgcg gaatgcctgc cgcctcaaaa tctaaaaatt caatcaagcc
     1861 catctcgaca ggtcggtcaa tcaattcggc ataagatgcc gcctgaaaga caaacctccc
     1921 tgtttccggc agcgttgtgg caatacgcca ttcggacgga atacccgtca attccaagcg
     1981 gtgcggcagc gtttccgttc cttcgacttt caaaaacagg cacgatccgt caaaaaaacc
     2041 gcgttctgtc gtcaggaaag aacctcgaac cgacaaatcg aatgcatata cggtgtagcg
     2101 gatttgccac tcgccgcgta cggcggcggc atgccagcgg tttttggcaa tttgttcgag
     2161 cggcatggac gtgccgttac aggatgcatg gatagaagtg atgtggcggg aaaaatcccg
     2221 aatcagatag ctgcccggaa cccagtttgg caggcttatt tctataggaa gatcatcatc
     2281 ttgtgtgaat gtcagcagga tgtgccactc gtggtcgaga ggggacgggg ttattttata
     2341 atgaatcata actatcaaat atatcgttaa acgggatgga ttaaatacct ttaaaatgca
     2401 gcttaaccta catcaataaa gtgccacaaa aagggaaaat tggaaacaaa agcaatggcg
     2461 gtcgggttgt aatttattat aacaatatga tttatatgta ataaaaaaca gattaagcaa
     2521 agggctcgtc ggcggcgcga atgtaattcc gcttggcgta ataaggcaga tatgttaaat
     2581 ttagaaaaaa ttacgcttgc ccggattgca ccttaaacag gctgcggaag cggcaggata
     2641 aaaatcttta ttcccataaa ttcatggaga ctctcatgga cacacaaact tacaactaca
     2701 aagtggtgcg ccagttcgcc atcatgactg tagtttgggg gattgtgggt atgttggtcg
     2761 gcgttatcgt cgccgcccag ctttttgctc ctgccctcga cttgtctaat atcggacctt
     2821 ggttccactt cggccgcctg cgtccgctgc acaccaatgc ggttattttc gcatttggcg
     2881 gttgcggcct gatcggcaca tcatactacg ttgtccaacg tacttgtaat acccgtcttt
     2941 tcggcggttg gctgccggca tttacctttt ggggctggca ggcggtaatc gttgccgccg
     3001 tcgtcagctt ccctatgggt tggacccaag gtaaggaata tgccgaactg gaatggccga
     3061 tcgatattct gattactttg gtttgggtgg cttacgccat cgtattcttc ggtacgattg
     3121 ccaaacgtaa gattaaacat atttacgttg ccaactggtt ctacggcggc tttattttgg
     3181 cggtcgcact tttacacatc gtcaacaata tcagcatccc ggccggtttg atgaagtcat
     3241 accccgtcta ttccggtgcg attgatgcta tggttcaatg gtggtacggg cataatgccg
     3301 tgggcttctt cctgactgcc ggcttcttgg gtatgatgta ctatttcgta cccaaacaag
     3361 cagcccgccc cgtttactcc taccgcctgt ccgtcgttca cttctgggcg ttgattttca
     3421 cctatatgtg ggcgggtccg caccatcttc actacactgc gctgcctgac tggacgcaat
     3481 ctttgggtat ggttctgtct ttgattctgt tcgcaccctc ttggggcggt atgattaacg
     3541 gcatcatgac cttgtccggc gcgtgggaca aactgcgtac agacccgatt cttaaattcc
     3601 tgattgtatc cttgtccttc tacggtatgt ctacctttga aggcccgatg atgtcgatta
     3661 aaacggtcaa tgcattgagc cactatacgg actggaccgt cgcgcacgtt catgcgggtg
     3721 cgttgggctg ggtaggcttt gtaaccatcg gttccgtcta ttacatgatt ccccgtctgt
     3781 tcggcaaaga acagatgcac agcaccaagc tggtagaagc acatttttgg attgcgacca
     3841 tcggcgtggt tctgtatatc gctgccatgt ggattgccgg tgtgatgcag ggtttgatgt
     3901 ggagttcttt gaacgatgac ggtacgctga cctactcgtt tgtcgaatcc gtaaaacgca
     3961 ccatgcctta ctacgtgatc cgttttgcag gtggtttatt gtatctgagt ggtatgtgca
     4021 ttatggcgta caacgtgtac cgcacagcca tcggtggtaa agcagtcgat gccgaaatcc
     4081 ctgcggtttc ccaaacacag caccactaaa atactaagaa agataggcta ccaaaatgaa
     4141 attacaacaa ttggctgaag aaaaaatcgg cgttctgatt gtgttcacgc tgcttgtagt
     4201 cagtgtcggt ctgttgattg aagttgtgcc cttggccttt accaaggcgg caacacagcc
     4261 ggcgccgggc gtgaagcctt acaatgccct gcaggttgcc ggacgcgata tttacatccg
     4321 tgagggctgt tacaactgcc actcgcaaat gattcgtccg ttccgtgcgg aaaccgagcg
     4381 ttacggtcat tactctgttg ccggagagtc ggtttacgac catccgttcc aatggggttc
     4441 caaacgtacc ggtcctgatt tggcacgtgt gggcggtcgc tattccgacg aatggcaccg
     4501 tatccacctg ctgaatcccc gtgatgtcgt gcctgagtcc aatatgccgg cattcccgtg
     4561 gcttgcacgc aataaagtcg atgtcgatgc aaccgttgcc aacatgaagg ctttgcgtaa
     4621 agtaggtact ccttacagtg atgaggaaat tgcgaaagcg cctgaggctt tggcaaacaa
     4681 atccgagctg gatgctgtag tcgcctatct gcaaggattg ggtctggctt tgaaaaacgt
     4741 aaggtaacat catggatatt aacggtattc gtgctctctt cacggtatgg atctttatct
     4801 gtttcctgtt ggtactctat atcgtcttca acaggcggaa taagaaaaac tacgataatg
     4861 ccgcaaacag catttttgat gaaaaccaag atgcgcaaga taagaaaagc gaaaaccgtt
     4921 aatattgtga taacggagca aaacaatgaa cacaacatcc caatttacca gtaatttctg
     4981 gaatatatat attgcagtta ttgtcttact gagctttatc gctttggctt ggctgctgct
     5041 gtctcaaaat gttgtcaaac gtccgaagaa gggcgaagaa gtacaaacta cgggtcatga
     5101 gtgggacggc attgccgaat acgacaatcc gctgccccgc tggtggtttt ggctgtgtgt
     5161 tttgacgtgg ctgttcggta tcggttattt ggttatgtat ccgggtgtcg gcgactacaa
     5221 aggtctgctg aaatggacca gccataacca atatgaaaaa gaggtcaaaa aagccgatga
     5281 gcaatacggc aaactgtatg ccaagtttgc ggatatgccg attgaaaaag tggcaaaaga
     5341 ccctcaagcc aagcaaatcg cccaaaacct gtttaacact tattgtatcc agtgccacgg
     5401 ctctgatgct aaaggctcta aaggttttcc gaatctgacc gatagcgatt ggttgtgggg
     5461 cggtgatccc gataaaatcc acgagaccat cgaaaaaggc cgtgttgcga ctatgcctgc
     5521 ctggggtcct gctttgggcg aagaaggcgt gaaagacgtt gcccattatg tgatgtccct
     5581 ttcaaaaccc gaaggtcagt atgatgagga acgtgccgcg cgcggacaag ccttgttcag
     5641 cggtccgcct gccaactgtt tcacttgcca cggcgataag ggacaaggta tccaaggttt
     5701 gggtccgaac ctgactgatg acgtgtggtt gtggggcggt acgcaaaaat ccattatcga
     5761 aaccattacc aacggtcgca gcagccaaat gcccgcttgg ggacatttct tggataaaga
     5821 caaactgcat attatgactg cttatgtatg gggtctttcc gataaagacg gtaaagctcc
     5881 ggtgaaaaaa gccgagcctg caccgactcc cgcaccggcg gcagaacccg cagcctctgc
     5941 tcctgcagaa gcagcacaag ccgcgtccga agccaaacct gccgcagcag aacctaaagc
     6001 cgaggaaaaa gctgcacctg ctgccaaagc ggacggcaaa taggtttatg aaaccgtttg
     6061 tgccgcctgc catggcaatg cgattccggg tattccccat gtaggcatca aagccgattg
     6121 ggccgaccgc atcaaaaaag gcaaggacac gttgcacaaa cacgcgatcg aaggtttcaa
     6181 tacgatgccc gcaaaaggcg gtcgcggcga tttgagcgat gatgaggtta aagctgcggt
     6241 tgactatatg gtcaaccagt caggcggcaa attctaactt gactgagttt ccgatattat
     6301 cggttatgaa aatccagatt cagtattgaa tctggatttt ttgttttaac gggcatccgg
     6361 ttttaaacgc agactgccta tttgttgtaa tgaattttga ctttagtcat aaagaattag
     6421 tctttattgt ttataatcgc gcatcatcac gatagcccta ttttcaaaag gacgatttat
     6481 ggatacacaa atcaagactg aagccgacaa tcagagcaac cggcgttatc tgaccgtttg
     6541 gcggtggcat ttttatgccg gtctgctggt tatgcctttt cttaccctgc ttgccgttac
     6601 gggtttgggt atgctgctgt ttgccaatat taccggtaag gagggcgagc ggattcatgt
     6661 tgtgccgcag gcaacggtac aacctctgtc tgttcaggcg gaagcggcac gcagtgccgt
     6721 taatccggaa acttcgtccg tcgttcagta tattgcgccg cgtgccgatg atatggttgc
     6781 cgtgttccgt gtcaacaatg agggcaaggc aacgatggtc gcggtcgatc cttatacggc
     6841 aaaagtggtc agtaccatgc cgcgcaatca gggttggtat tacgcgatgg atgaaatcca
     6901 cagcgatatg atgctcggtt cgacaggtga ttatcttttg gaaacggctg catcgctgac
     6961 gattatcatg ataatcagcg gtttgtacct ttggtgggtg aaacggcgcg gcatcaaggc
     7021 gatgctgctg ccgccaaaag gcagggcgcg ttcttggtgg cggaatctgc acggcgcgtt
     7081 tggaacttgg gtgtcgttga ttttactgtt gttctgcctg tcgggtattg cttgggcagg
     7141 tatttggggc ggcaagttcg tgcaggcttg gagtcagttc ccggccggca aatggggtgt
     7201 cgaaccgaac cctgtttcag tcgtgccgac ccacggcgag gtattgaatg acggcaaggt
     7261 taaggaagtg ccgtgggttt tggagcttac gcctatgcct gtttcaggga cgactgtggg
     7321 caaagacggt attaaccctg acgagccgat gacattggaa accgtcgacc gttttgcgcg
     7381 ggaaatcggt ttcaaagggc gttatcagtt gaatttgccc aaaggcgagg acggagtgtg
     7441 gactttgtcc caagactcta tgagttacga tatgattagt ccgtttgccg accgcacggt
     7501 gcatatcgac cagtacagcg gcaaaatcct tgccgacatc cgctttgacg attacaaccc
     7561 gttcggcaaa tttatggcgg caagcattgc gctgcatatg ggtactttgg gctggtggag
     7621 cgtgttggcg aacgtcttgt tctgccttgc cgtcattttt atcggtatca gcggctgcgt
     7681 gatgtggtgg aaacgccgtc cgtccggcgc ggtgggcatg gttccgccgg cacaaaaaat
     7741 caagctgccc gtctggtggg caatggcggt gccgctgctg ctgattgcat tgcttttccc
     7801 gaccgcactg gttgccattg ccgtgatttg gctgttggat acgctgctgt tgtcgcggat
     7861 tcctgttttg aggaaatggt ttaaatgacc aaatgccgtc tgaaaggttc agacggcatt
     7921 ttgtttgaag gcaggcgggg gaaaggctat ataatcccga atacttttcc gcaacttttg
     7981 tcgaaatcat gttttatctg tatcaatcca accgtcttga aacgctggcg gcactgtttg
     8041 cccacattca aaaagtcaaa ccgctgaaat cggctttaca gcccgaacag attattgtgc
     8101 agagtcaggg gatgcgccgc tacctcaaca cctgcctcgc ccgcgatttg ggcgtggcgg
     8161 cgaatttggc gttcagcctg cccgccagcc tgacgtggaa gctgatgaaa aaactgattc
     8221 ccggcattcc ggaactcagc ccgtttgcac ccgaagtcat gcgctggcgg ctgctggatt
     8281 tgttccgcag cgaagcattc cggaatacgg cagaatttga agatgtgagg aatgtgctgc
     8341 aagactatct gggcagcggc gaatcggcag attaccagct tgcgggacag cttgcggaca
     8401 tattcgacca ataccttgtc tatcgtccgc agtggataga cgcgtggcag cagggcagga
     8461 tactcggttt gggcgacgat gagatctggc agtccaaact gtggcgttac ctcgacgatg
     8521 gcaggcagag cgcgccgcac cgtgtcgcgt tgtgggaaaa gctgcttgcc gcgttggaca
     8581 aggataagct gcccgagcgt tatttcgtgt tcggcatttc cacgatggcg ccgatgtatc
     8641 ttcagctttt gcacaagctg tccgaacatt gcgatgtgtt cgtgttcgca ctcaatccga
     8701 gcgggatgta ttggggcaac gtcatcgaag cggcgcaaat cctcaaaggc ggcggcgatc
     8761 ccgatttaac tcaggcaggg catccgctgc tcgcttcatt gggcaagcag gggcgcgact
     8821 ttttcgactt tttgaacgaa atggaaatag aaggagaaac gccggtattt gaagaaggcg
     8881 ggcgcgatac gcttttgcac gccctgcaaa ccgatattca aaacctgaaa atgccgtctg
     8941 aaaatgtggg aagcgtcggt acggatgacg gttcgatacg tatcgtctcc gcgcacagcc
     9001 ctttgcgcga attgcagata ctcaaagaca aactgttgaa aattctgcat gaacatcccg
     9061 attggcagcc gcatgatatc gccgtattaa ccccgaatat cgaatcctat acgcctttta
     9121 tcgaagccgt gttcggacag gcgcagcccg gtgcgcaggc attgccgtat tccgtttcag
     9181 acgtgaaaat cagccgccga caaccgctgt ttcatgcttt gtcatgcctg ttcgacttgt
     9241 tggaaagccg atttgaagtc gataaagtgc ttgtgctttt agaaaccgca cccgtgttgc
     9301 gccgtttcgg actgactgag gacgatttgc cgcttttgca cgatatggtt gccgatttga
     9361 acgttcactg gggtttggac ggagaaatgc gcggcggcac ggatcagctg tttacctgga
     9421 agcaggcggt agaacgcatg atattgggct ggatgctgcc cgaaggcggc aacccgatgt
     9481 ggcaggatgt cagcgcgtgg tatgccgacg tgaatcaaac cgccctgttc ggacgttttg
     9541 ccgccctcct cgaaaccctg tcggatattg tacggatatg gcggcagccc gcaacgatcg
     9601 gcgaatgggt ggcgcgttgc cgggatttgc ttgaaacatt gttccaagct gaagccgatg
     9661 accaaaagtc agtccaaaac cttgaaaacg aatgggtcaa atggcaggcg gaaacagaat
     9721 tggcgcaatt ttccggacag ttgccgcaac aaaccgtcat ccgccacatc cgccgctttc
     9781 tcgacagcga aagcgaggca ggctttttac gcggcggcat caccttttgc agtatggtgc
     9841 cgatgcggag cctgcccttt aaagtcatct gtctgttggg tttgaacgac ggagattttc
     9901 cccgcaatac caaagccgcc gtattcgacc tgattgccaa acatcccgcc aaaggcgacc
     9961 gcgcccgccg cgacgacgac cgctacctct tcctcgaagc cctcatcagc gcgcgtgaaa
    10021 tcctgtacct gtcctacatc gggcgcgaca tccgcaaaga cgaagaactg gctccgtctt
    10081 ctttgttggg cgaactcatc gacacagttg ccgccatgac cggcacaaac agccgccaac
    10141 ttgcacaaaa ctggatagaa cagcatccgc tgcaagcctt ctcgcgccga tattttcaag
    10201 aaggcggacg ttcagacggc atattcggca cgcgtaccga ctacgccgcc gcgctcggac
    10261 aaacgcccga accgccgcaa ccctttttcg atcaacccgt agaaaacgcc gaacctgttg
    10321 ccgaaattgg acaggacgaa tttatccgct tctggcgcaa ccctgtcaaa gtatggcttc
    10381 agcagcagct tgcgtggagc gaaccccata tcggcgaagc ctgggagcct gccgaaccct
    10441 tcgagccgca acacgccgat caaatcgcca aaacctacat cgaagcacgc cgcgaaggac
    10501 gggatttttc ccaaaccgcc gcccgcatcg gggcggaaag cctgctgccg tcgggagagt
    10561 tgggcagact ttggcagcaa gacttccaaa ccgctgccaa acaaatcgac acggcggttt
    10621 taaacagccc caaactgcca ccgctttcat atgccatacc gtcggacggg caaatcctga
    10681 aaggcagctt gggcaatctg taccgctgcg gacaagtgtt ttacgcctac ggcaaaccca
    10741 acgcgccgca acgtatcgct tttctgctgg aacacctgat attttgcgcc gttatgccgt
    10801 ctgaaaccga aacgcggcaa acctttatcg tccaatccgg agaaaccgaa atattggcgg
    10861 aaatcgcgca agacagggca ttgcagctat tgtcggaatg gatggcgttt ttcaatatcg
    10921 ggcaaaaccg cccgctgccg ttttttgcca aaacctcgct tgccgccgcc gaagcgtttg
    10981 cccaaaaaca agattgggaa gccgccctga aaaaagccca aaccgcctat tacggcaaca
    11041 aagtcagcaa agggcagaaa gactataccg aagtcgccct cgtgttcggc aacgcaagcc
    11101 aaaacccgct cgaacagccc ctgtttgaaa acctcgtccg cctgcttgcc gacacgtttg
    11161 ccgcagcgga aaaaaaggaa gaggccggag cagcctgacg ggatggaaag gcaaatgccg
    11221 tctgaaaaca gcaaaaaggt tttcagacgg cattttgttt atcgtgttta aggtgcggga
    11281 tagaatgtgg gcgcgccggg accgacgggc aggcccaaaa caaataccca aatgcagaat
    11341 aaggcaatcc acgcaatcaa gaagaaagcg gaatacggca acatcataga aatcagcgta
    11401 cccacgcccg catctttttt gtatttgatc accgtcgcca taatcagccc gaaataactc
    11461 atcatcggcg taataatatt ggtaacggaa tcaccgatgc ggtaagcggc ttgaatgact
    11521 tcgggcgcgt agccggccaa catcagcata gggacgaaaa tcggcgcagt taccgcccat
    11581 tgcgcggagg cggagcctat catcagattg ataaaagcac aaattaaaat aaaaccgata
    11641 aacaacacgc tgccgcccaa gccgacttct tttaagaacg tcgccccttt aacggcaata
    11701 tattgcccaa tattcgtcca attaaaaaat gcgacaaact gtgcggcaaa aaagatgatg
    11761 accaaataaa gccccagagt actcatcgat tcggccatcg cattaacgac ttcctgttcg
    11821 ccgcgcaaac ttcgggttac ccggccataa acaatgcccg gcagcgcaaa caacaagaaa
    11881 ataaaaacaa caatcgattt taaaaacggc gaaccggaaa ccaatcctgt ttcaggatga
    11941 cgcaaaatac cgtcggcagg gacgatgctc caagccaata gggcggataa ggcaacaaac
    12001 accacgccag cccaaattaa tcctttatat tccaaaggcg tgatttcatt ggaatgccga
    12061 atgtcttttt cttcttgtga caaatctgat tgataagggc ccaattgcgg ttcgacgatt
    12121 ttttcagtaa caaaataacc aatcaaagca atcacaaacg tactggctac cataaaaaac
    12181 cagttggctt cagggcctac gacgtagtcg ggatggatga tttgcgccgc ctgttgggtg
    12241 atgcctgcca agagcggatc gattgtgcct aagaacagat tggccgaata accgcccgaa
    12301 acgccggcga aagccgcagc cagaccggca agcggatggc ggccgaggga atgaaagatg
    12361 atggcggaca aagggattag gacgacatag cccaattcag aagcggtatt agataaaatc
    12421 cctgtaaaaa caaccataaa agtagtgagt ttgcgtggag attttgtgag caataagcgc
    12481 attaatgcgg aaatcaagcc cgatttttcc gcaatcccca cgcccaataa agaaaccaac
    12541 accgttccca acggcgcgaa accggtgaaa tttttaacgg tatgcgtcag gattttgatc
    12601 aaaccgtcag catcgagcag gctgacaacg tgaatcaaac cgtcatcggc acgtcctttc
    12661 gcaccaacag ggcgcggatc ggggacggat agtccgaaat acgcaccggc ggcagaggca
    12721 atcagcaata acacaatgaa aataataaaa agcgtaaccg ggtgcggcaa catattgccc
    12781 agccattcga ctgtgcgtaa aaatcgtccg tcccgttgcg tatcggtttg actcatctgc
    12841 ttctccttaa aaaaatatat tgagtgcatt aaatttttga atgtaacatg aagtgttttg
    12901 taagcaaact aaaataatcg tatatgtata taaccgtaat agattaaaac agaaaatgcc
    12961 cacatcgtta ttttcataaa ggcggtaatc cgaaaacttg acgttaaagc cttatcagga
    13021 atgactggaa ctcaaaaaaa cggattcccg cctgcgcggg aatgacggga ttttcggttt
    13081 ttgtttgcaa gaatgccgga gaagaatgca gtttacattt tgaatgatat tgttattaat
    13141 tgtaaataaa tattggaagg taaatgatat gaaaaatgaa attcaaaaaa tcatggacaa
    13201 atataatcca tggcatgaag atgattttga gtcgtatgaa gacattgcca aagatgtatc
    13261 gctgatgaca gataaaacgt tcattgaaca ttatttgtta gaagtttatt cagaagaaaa
    13321 cggacatttt gaccaagaga atatccatgc gatgataggg gaaattaaaa atgcaattta
    13381 gtgaatatga gacctttgca aaaatagtct gttaacgaaa tttgacgcat aaaaatgcgc
    13441 caaaaaattt tc
//
LOCUS       DAWGNT010000040        13147 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.040, whole genome shotgun sequence.
ACCESSION   DAWGNT010000040 DAWGNT010000000
VERSION     DAWGNT010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 13147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13147
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.040"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(111..938)
                     /gene="fghA"
                     /locus_tag="WHR98_000833"
     CDS             complement(111..938)
                     /gene="fghA"
                     /locus_tag="WHR98_000833"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011961786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HEZ2307535.1"
                     /translation="MKLIEQHQIFGGSQQVWAHHAQTLQCEMKFAVYLPNNPENRPLG
                     VIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDAAYDLGQGAGF
                     YLNATEQPWATNYQMYDYILNELSRLIEKHFPTNGKRSIMGHSMGGHGALVLALRNRE
                     HYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQKYDANSLIQQGYKVQGIRIDQG
                     LEDEFLPTQLRTEDFIETCRAANQPVDVRFHKGYDHSYYFIASFIGEHIAYHAAFLK"
     gene            complement(947..2056)
                     /locus_tag="WHR98_000834"
     CDS             complement(947..2056)
                     /locus_tag="WHR98_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000842106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase/class
                     III alcohol dehydrogenase"
                     /protein_id="HEZ2307536.1"
                     /translation="MKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDA
                     FTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVSSVKPGDHVIPLYTAECGECEFCCSGK
                     TNLCVSVRDTQGKGLMPDGTTRFSYQGQPIYHYMGCSTFSEYSVVAEVSLAKINPEAN
                     HEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGAIGLAVVQGARQAKAGRIIAID
                     TNPSKFELAKQFGATDCLNPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRQALES
                     AHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPKMVEDSMKGD
                     IELEPFVTHTMTLDQINKAFDLMHEGKSIRAVIHY"
     gene            2204..2611
                     /locus_tag="WHR98_000835"
     CDS             2204..2611
                     /locus_tag="WHR98_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEZ2307537.1"
                     /translation="MAYTTAKAAEKIGISAHTLRFYDKEGLLPNIGRDEYGNRCFTDN
                     DLQWLGLLQCLKNTGMSLKDIKRFAECTVIGDDTIEERLSLFENQIENVKCQIAELKR
                     YLDLLEYKLAFYQKAKALGSVKAVNLPQIPETA"
     gene            complement(2962..3276)
                     /locus_tag="WHR98_000836"
     CDS             complement(2962..3276)
                     /locus_tag="WHR98_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HEZ2307538.1"
                     /translation="MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLAR
                     GQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVDLALKEN
                     AN"
     gene            complement(3287..4972)
                     /gene="rpsA"
                     /locus_tag="WHR98_000837"
     CDS             complement(3287..4972)
                     /gene="rpsA"
                     /locus_tag="WHR98_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEZ2307539.1"
                     /translation="MSMENFAQLLEESFTLQEMNPGEVITAEVVAIDQNFVTVNAGLK
                     SESLIDVAEFKNAQGEIEVKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEA
                     MENGNILSGIINGKVKGGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKL
                     DKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGL
                     LHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQDKQRVSLGMKQLGEDPWSGLTRRYP
                     QGTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTNKNVHPSKVVQLGDEVEVMIL
                     EIDESRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGLPGGIDGLV
                     HLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDPFGNFISVND
                     KGSLVKGTVKSVDAKGAVVALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVT
                     VDRKNRSIKLSVKAKDAKESREALNSVNAAANANAGTTSLGDLLKAKLSGEQE"
     gene            complement(5128..5784)
                     /locus_tag="WHR98_000838"
     CDS             complement(5128..5784)
                     /locus_tag="WHR98_000838"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEZ2307540.1"
                     /translation="MNRQKVIAIDGPGASGKGTVAARVAAALGYDYLDTGALYRLTAL
                     YAQKQGVEWHDEENVSKLAKKLPAVFSGSRILLDGEDVSDGIRTEAIGMGASAVAQLP
                     KVRASLLQRQRDFLTEKGLVADGRDTGSVVFPQAELKIFLTAESKIRAERRAKQIGIP
                     CEGLAFERILSDIEARDEADRNRKIAPLKQQPDALLLDTSRLTIEETVKKVLDWYREV
                     "
     gene            complement(6028..6837)
                     /locus_tag="WHR98_000839"
     CDS             complement(6028..6837)
                     /locus_tag="WHR98_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEZ2307541.1"
                     /translation="MPLLFLFLIAMVVRNVTLPGAMEGVAFYLKPDFSKITAELFVFV
                     LGQVFFALSLGFGVMITLSSYLDKNENLVQTAVITAITNTIIAILAGFMIFPSLFSFG
                     VAPDSGPTLVFQSLPIVFSHMWAGSVFAVIFFSLLLIAALTTSLTIYEVLITTIQEKT
                     KIRRTAAITIVLAAIFIFGNIPSILSYGPWKDVSIFGKNIFDAFDYISGNILFMLTAL
                     GSALFVGFVMKDEAKEELLYKGNHTTVNIWFAYVKYLVPLVILLIFVSNLF"
     gene            complement(6897..7064)
                     /locus_tag="WHR98_000840"
     CDS             complement(6897..7064)
                     /locus_tag="WHR98_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009348547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEZ2307542.1"
                     /translation="MYDLGGWVISYIVNIIGGNLNISSPIDGVVTKGFFAEHIETALG
                     KLRFIRCFLSP"
     gene            complement(7056..7262)
                     /locus_tag="WHR98_000841"
                     /pseudo
     CDS             complement(7056..7262)
                     /locus_tag="WHR98_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213365.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(7791..8483)
                     /locus_tag="WHR98_000842"
     CDS             complement(7791..8483)
                     /locus_tag="WHR98_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HEZ2307543.1"
                     /translation="MKLIKYLQYQGIGSRKQCQWLIRGGYVSINGTCMDDTDADIDSS
                     SVETLDLDGEAVTVVPEPYFYILLNKPEDYETSHKPKHYRSIFSLFPDNMRNIDMQAV
                     GRLDADTTGVLLITNDGKLNHNLTSPSRKIPKLYEVTLKHPTGETLCETLKNGVLLHD
                     ENETVCAADAVLENPTTLLLTITEGKYHQVKRMIAAAGNRVQHLHRRRFAHLETENLK
                     PGEWKFIDCPKL"
     gene            complement(8551..10527)
                     /locus_tag="WHR98_000843"
     CDS             complement(8551..10527)
                     /locus_tag="WHR98_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEZ2307544.1"
                     /translation="MSKLKTIALTASGLSVCPGFLYAQNTSSHQIGLAIMRLNSSILD
                     LPPTKQYFQSGSLWSELRQGFRMGEVNPELVRRHESKFIASHSYFNRVINRSRPYMYH
                     IANEVKKRNMPAEAALLPFIESAFVTKAKSHVGASGLWQFMPATGRHYGLEKTPVYDG
                     RHDVYAATDAALNYLQYLYGLFGDWPLAFAAYNWGEGNVGRAINRARAQGLEPTYENL
                     RMPNETRNYVPKLLAVRNIIAAPQSFGMNISDIDNKPYFQAIEPDRPLDNEAIARLAG
                     ITQSELLALNPAFNVPAFIPKSKRKLLLPVASVQTFQSNYLNAAPDSLFSWEVYTPAA
                     KTSLSDISTATGMSIADIKRLNNLNGNLVNAGRSILVAKNGKTLQTASESVVSIDIDN
                     TPDTYRSNMPAGTVNVGIARIRPAAAQTADITVAPLPQKTVRTEPDPLVRIAEPALAT
                     AAAQPQTEKQTAMPSETQTATLAQIIPQNDMQAADELMQLVARNNLRRQAEETISAVI
                     GTPDTVAEHNISSSPQHTVAADGKRRARLETRVAKAADGEAEISPLHASIHRVVEGDT
                     LFNIAKRYNVSVADLIVANNIKGNTIQKGQVLRLAQAAPAQTRIEKVSYTARKGDTFK
                     SIAARFNIHIDDIRRLNPNLNTINPGQRVKLIGS"
     gene            10706..11371
                     /locus_tag="WHR98_000844"
     CDS             10706..11371
                     /locus_tag="WHR98_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEZ2307545.1"
                     /translation="MDSWFEDTAMGRYVAKLEQDFFGRYLDSYRFSGMCAVQVGGPWL
                     SLSEDVVCVPRDMSMSAENMALADVSADMLLFPHTLEGGVPSQILSEAHRILKPCGRL
                     MLTGFNPYSLWGFSRWFDGERLPEKRFCLPLPELKRQLADVGFDIEFGKFMVYLPPVS
                     SLGQIRFWRFMEKAGDRWWPQCAAVYGLVLVKRAAGVTPLPAWDGYLGGKALAAGAAR
                     IAD"
     gene            11423..12250
                     /gene="mutM"
                     /locus_tag="WHR98_000845"
     CDS             11423..12250
                     /gene="mutM"
                     /locus_tag="WHR98_000845"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HEZ2307546.1"
                     /translation="MPELPEVETTLRGIAPHIEGKTVEAVVLRQLKLRWQINPDLGEI
                     LSGRQVLSCGRRAKYLLIRFQTGVLLIHLGMSGSLRIFTPSDGRIGRPDRHDHVDIVF
                     SDGTVMRYRDPRKFGAILWYEGIEEHHPLLEKLGPEPLSEAFCADYLYARLKAQKRAV
                     KLALMDNAVVVGVGNIYANESLFRAGISPYRPANRLKKKECALLVETVKAVLQRAIET
                     GGSTLRDFVDSDGKSGYFQQEYTVYGRHNQPCPQCGGLVVKETLGQRGTFYCPNCQK"
     gene            12338..13105
                     /locus_tag="WHR98_000846"
     CDS             12338..13105
                     /locus_tag="WHR98_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEZ2307547.1"
                     /translation="MSSNKASFFTRLRRLCRLAVWLFKTGKNLRGIDGGCPESRNRAV
                     IELGRGVLAALDIGLEVGRPAPEHPNGVLVAANHVSWLDIFAMSAVYPSSFIAKQEIK
                     SWPVLGKMGQNAGTVFINRNSRRDIEPINRAVCETLQRGQNVSFFPEARTSSGLGLLP
                     FKAALFQSAIDAGAKVLAVALRYYDETGKRTARPSYADVGLPTCLWRIVSMKKLTIRV
                     DFVCVADAAESEDRYALKDKIEESIRAVVADDADIAV"
BASE COUNT         3016 a         2966 c         3627 g         3538 t
ORIGIN      
        1 ccgtagagtc ggcttcttcc ggctcagacg gcatacgttt atgccggcac ttcttaccgc
       61 cctcgtgccg gctatcccaa aactgctttg aacactgaac gctctttgat ttacttcaaa
      121 aacgcggcgt gataagcaat atgctcgcca ataaaactgg cgatgaagta atagctatga
      181 tcgtagcctt tgtggaagcg cacatcgacc ggctggtttg ccgcacggca ggtttcgata
      241 aaatcttcag tacgtaattg tgtcggcaaa aactcatctt ccaagccttg atcgatgcgt
      301 ataccttgca ctttataacc ttgttgaatg agtgagttcg catcatattt ctgccatttt
      361 tcgcgatctt ttcctaaata agcagtaaag gctttttctc cccacggtac gaggcttggc
      421 gataaaatag gcgaaaaggc agaaacactt tgataatgtt cccgattccg cagtgccaat
      481 accaatgcgc cgtgtccgcc catcgaatgc cccataatgg aacgtttgcc gttggtagga
      541 aaatgtttct caatcagacg ggacagctcg ttcaaaatgt aatcatacat ttgataattc
      601 gtcgcccaag gctgctcggt cgcattcaaa taaaagcctg caccctgtcc taaatcgtaa
      661 gcggcatcgt tcggcacttg ttctccgcga gggctggtat cgggggccac cacaattact
      721 tgatgttctg ccgcataacg ctgaaagcct gatttggtaa tgaaattttg ttccgtacac
      781 gtcaagccgg aaagccaata aatcacacca agcggtcgat tttctggatt atttggcaaa
      841 tagacggcaa atttcatttc gcattgaagc gtttgggcat gatgcgccca aacttgttgc
      901 gaaccaccaa aaatttgatg ttgttcaatc agtttcatcg cataccttag tagtgaataa
      961 cggcgcggat cgatttacct tcgtgcatta agtcaaaggc tttattgatt tgatcgagtg
     1021 tcattgtgtg ggttacaaac ggttctaact caatgtcgcc tttcattgaa tcttccacca
     1081 ttttcggcag ttcagagcgg cctttcacac cgccaaatgc tgaacctttc caaacacgac
     1141 ctgttaccaa ctggaacgga cgcgttgaaa tttcttgtcc tgcacctgct acgccgatga
     1201 taatggattg accccaacca cgatgtgcac tttctaatgc ttgacgcatt acgtttacat
     1261 tgccgataca ttcaaaggta tggtcaatgc cccatttgtt gatgtctaac aacacatctt
     1321 taattggttt atcgtaatcg ttcgggttca aacaatccgt tgcaccgaac tgttttgcca
     1381 actcaaattt tgatggattg gtatcaatgg cgataatgcg gccggctttg gcttgacgcg
     1441 caccttgcac caccgccaaa ccaatcgccc ccaaaccaaa cacggcaaca gagtcgcctt
     1501 cttgcacttt tgccgtatta tgtaccgcac caatacctgt ggtaacgccg cagccgagca
     1561 aacatacttg ttcatggttg gcttcagggt tgattttcgc cagtgaaact tcggcaacaa
     1621 cggagtattc actgaaagtc gaacagccca tatagtgata aatcggctga ccttgataag
     1681 aaaaacgcgt cgtgccgtcc ggcattaagc ctttaccttg tgtatcacgc actgagacgc
     1741 acaagttggt tttacctgaa caacaaaact cacattcgcc acattcggcg gtgtaaagcg
     1801 gaatcacgtg atcacccggt tttacgcttg acacaccttc gcccacagca acgaccacac
     1861 ccgcaccttc gtgtccaagc accacaggga atacgccttc aggatcgctt cctgataatg
     1921 taaacgcatc agtatggcac acgccagtgt gggtattgcg gattaacacc tcgcctttac
     1981 gcggcatttc cacgtcgatt tccacaattt gtaagggttg gttaggggcg aatgccaccg
     2041 ccgcacgaga tttgatggtt gaatcggttt gtttcatttc cattgtcttt cctcttaatt
     2101 cattgacaaa gttgccttac ctgagcaaca tagcaacagt ttacacttta gagttaactc
     2161 taaagcaagt gttttttact gtttttgttt agaaggaggg aaaatggctt ataccactgc
     2221 caaagccgcc gaaaaaatag gcatctccgc ccacacccta cgtttttacg acaaagaagg
     2281 cttgttgcct aatatcggac gtgatgaata cggtaaccgc tgttttaccg ataacgattt
     2341 gcaatggttg ggcttattgc aatgcttgaa aaatacgggg atgagcttaa aagacatcaa
     2401 acgctttgcg gaatgtaccg tcattggcga cgataccatt gaagaacgcc tttccttgtt
     2461 tgaaaatcaa atagaaaatg tgaagtgtca aattgccgaa ttaaaacgct atttagattt
     2521 gcttgaatac aaattggcgt tttaccaaaa agcgaaagca ttaggctcgg taaaagctgt
     2581 aaatttgccg caaattcctg aaacggctta gttttagtgc aataagcagg atttttgtcc
     2641 tgttcgtaat agaaatcaaa aatttgttgt ttaaaaagcg gattgtaagc aatgatatag
     2701 tggattaaca aaaatcagga caaggcgacg aagccgcaga cagtgtaaat agtacggaac
     2761 cgattcactt ggtgcttcag caccttagag aattgttctc tttgagctaa ggcgaggcaa
     2821 cgccgtactg gtttttgtta atccactata aaaaaatcca cgctctaatc cgttgcttgc
     2881 ttggcttaag gtattgaagc agcggatgaa gttaaaccac agaaaaaacg ccgcgtaaca
     2941 gcggcgtttt aatgctaagg tttaattggc attttctttt aaagccaagt cgacccgctc
     3001 gcgcaattct ttaccgggct tgaagtgggg tacatgtttt tcaggtactt ctacacgctc
     3061 gccggttttg ggattgcgac cgatgcgggc aggacgatgg ttcaaatcga agctgccgaa
     3121 accgcggatt tcgatgcgtt gacctcgggc aagcgatcta gtcatggtgt caaccaagac
     3181 ttttacgctg tactctacgt cttttgccag aagatgcgtg ccgtttttgg cggcaaacac
     3241 ttctgccaaa cgaaccatta actcagactt tgtcatgtct gcaaccttat tcttgttcgc
     3301 cggagagttt ggctttcagc aggtcgccca agctggtggt gccggcattc gcattggcgg
     3361 cggcattgac ggagttcagt gcttcgcggc tttctttggc atctttggct ttaacggaaa
     3421 gtttgatgct gcggtttttg cggtcaacgg taacgatgac ggcttcaact tcgtcgcctt
     3481 ctttcagttt ggtggtcaaa tcttcaacgc ggtcggctgc aaattcggaa gcaggcaggt
     3541 agccttctac ttcgtcagac agggcgacaa cggcgccttt cgcatcgaca gatttcacag
     3601 tgcctttaac caaagaacct ttgtcgttca cgctgatgaa gttgccgaac ggatcgcctt
     3661 ccagttgttt gatacccaag gagatgcgtt ctttttccac gtcgattgcc aatacgacgg
     3721 cttcgacttc ttcgcctttt ttgtatttgc gtacggcttc ttcgccggat tcggtccagg
     3781 acaggtcgga caggtgaacc aaaccgtcga tgccgccagg cagaccgacg aatacgccga
     3841 aatcggtaat ggatttaacc gcgccggaga ttttgtcgcc tttgttgtgg ttggcggcaa
     3901 attcttccca aggattggct tggcattgtt tcatacccaa agagatacgc cggcggcttt
     3961 catcgatttc gaggatcatt acttcgactt cgtcgcccaa ttgtacaact ttgctcgggt
     4021 gtacattttt gttggtccaa tccatttcgg aaacgtgcac caagccttcg atgccttgtt
     4081 cgatttcaac gaacgcaccg tagtcggtca ggttggatac tttaccgaac aggcgggtac
     4141 cttgcgggta acgacgggtc aggccgctcc aaggatcttc gcccagttgt ttcataccca
     4201 gagaaacgcg ttgtttgtct tggtcgaatt tcaggacttt agcttctact tcttgaccga
     4261 cttccagaac ttcgctcggg tgtttcacac ggcgccatgc caagtcggtg atgtgcagca
     4321 gaccatcgat gccgcccaag tcaacgaatg caccgtaatc ggtaatgttt ttaacgatgc
     4381 ctttgatgac ggagccttct tgcaggtttt ccagcagggc tttgcgttct tcacccaagg
     4441 tagcttccag aacggcgcgg cgggacacaa caacgttgtt gcgttttttg tccagtttga
     4501 tcactttgaa ttcaatttct ttaccttcga agtgagaagt gtcttttaca ggacgtacgt
     4561 cgaccaaaga acccggcagg aatgcgcgga tgctgctaat cataacggtc aggccgcctt
     4621 tgactttgcc gttgatgatg ccggacagga tgttgccgtt ttccatggct tcttccaggg
     4681 caatccaatc ggcagcgcgt ttggcttttt cgcgggacag tttggtttcg ccgaagccgt
     4741 tttcgacgga ttcgatggta acggtaacga agtcgccgac tttaacttca atttcgcctt
     4801 gagcgttttt gaattcagct acatcaatca gggattctga tttcagacct gcgtttacgg
     4861 taacgaagtt ttggtcgatt gccactactt cagcggtaat cacctcaccc gggttcattt
     4921 cttgcagggt aaagctttct tccaacagct gagcaaaatt ttccatagac atatataact
     4981 cttttcggta caccgccaag gggtgcgggg tgggttggtg gatatctgcc gtccttggca
     5041 gggcagacgg gtacataagg tttcagacgg catatggggg atttttatgc cgtctgaaac
     5101 gtaatttgtg cgattatacc tgaaaattta aacttcacga taccaatcaa gcactttttt
     5161 tacagtttct tctatagtca ggcggcttgt gtccaaaagc agggcatcgg gctgttgttt
     5221 caggggggca attttgcggt ttcggtctgc ctcgtctctg gcttcgatgt cggacaggat
     5281 gcgctcgaat gccaaacctt cgcaggggat gccgatttgt ttggcgcggc gttcggcacg
     5341 gattttggat tctgccgtca ggaagatttt aagttcggct tgggggaaga cgaccgatcc
     5401 ggtgtcccgt ccgtcggcga ccagtccttt ttcggtcaga aaatcgcgtt ggcgttgcag
     5461 cagggaggcg cggactttag gcaactgtgc gactgcggat gcgcccatgc cgatggcttc
     5521 tgtccggatg ccgtctgaaa cgtcttcgcc gtcgagcagg atgcggctgc ctgaaaatac
     5581 ggcgggcagt ttttttgcca gtttggaaac gttttcttca tcgtgccatt ccacgccttg
     5641 tttttgtgca tatagggcgg tcaggcggta gagtgcgccg gtatcgagat aatcgtatcc
     5701 caatgcggcg gcaacgcggg cggcaaccgt gcctttgccc gatgcgcccg ggccgtcgat
     5761 ggcgatgact ttttgtctgt tcataagggg gattcctgat ggtttggggt atgggttttg
     5821 ccgtctgaag gatgtgtttc ccgttggggc ggattctacc tgttttaaag gacgattgtc
     5881 taagcagacg gaacgccgcc tgcccggaaa tatccgacag aagccggcaa gccggttcgg
     5941 attccggcgt tgcgggtatt gtggcgggca tcaatgtaat gccgtctgaa gtcagtatgg
     6001 ctttcagacg gcattaatcg gtgtgaatca gaaaaggttg ctgacgaaaa tcagcagaat
     6061 caccaacggc acgaggtatt tcacataggc aaaccaaata ttgaccgtcg tatggttgcc
     6121 tttataaagc aattcttcct tcgcttcgtc cttcatcaca aaaccgacaa acagcgcgga
     6181 accgagcgcg gtcagcataa acaagatgtt gccgctgatg tagtcaaaag cgtcaaaaat
     6241 atttttgcca aatatggaaa catctttcca agggccgtag ctcaaaatgg acgggatgtt
     6301 gccgaaaatg aagatggcag ccaatacaat cgtaatcgcg gcggtacggc ggattttggt
     6361 tttttcctga atggtcgtaa tcaacacttc ataaatggtc agcgaagttg tcaacgcggc
     6421 aatcaggagc agcgagaaga aaatcacggc gaacacagat cccgcccaca tatgtgagaa
     6481 cacaatcggc aagctttgga acaccaaagt cgggccggaa tcgggggcaa cgccgaagct
     6541 gaagagcgac gggaaaatca taaagcccgc aagtatggcg atgatggtat tggtaattgc
     6601 cgtgataact gccgtctgaa ctagattttc gtttttatcc aaatagctgg acaaggtaat
     6661 catcacgccg aaacccaggc tcagggcaaa aaatacctgc cccaaaacga agacgaacag
     6721 ttcggcggta atcttgctga aatcaggttt cagatagaaa gcaacccctt ccattgcgcc
     6781 cggaagggta acgttgcgga cgaccatcgc gattaggaac aaaaacagca gcggcatcag
     6841 ctattttgcc gctttttcaa tgccgccgat aacgcctttg accaaaatcc attggttcac
     6901 ggcgacaaaa agcagcgtat aaaacgcaat ttcccaaggg ctgtttcaat gtgttcggca
     6961 aagaagcctt ttgtaaccac accgtcgatg gggctggaaa tattcaaatt tcctccaata
     7021 atattaacga tatagctgat tacccagccg ccgaggtcat acagagcatt tgcaagctcc
     7081 ttgacatcgt cgacgcttgg gtcggtattg acaagtaggc tctcaatgta ttcatgctca
     7141 tcaagcattt gctttgccaa tttaaccgct ttgtcatcgg ataattttgt caaaataaca
     7201 tcggcaaggc gtgttcgctc aatctcaaaa tgcgtgggaa tggtagtggt cagatactcc
     7261 acttaggtta atcggctgga tcaggtttga cgattggtgt tggaagacat attgcaacag
     7321 tgtttgatta agatgagatg gaaattctac acgcgttttt taacaggaac tgactgattg
     7381 ttttttaagt gtgtagttat tttcactaat agagttatat tttatagtgg atatttctga
     7441 tttgcataaa tcaacaagga ttgaatcaga ttttatagat agatgaatcg tttatttttc
     7501 tacactggga cggtgaaata aaatttcata tgtcatatga tcgggaatgc tgcgtcagta
     7561 acatatgtag tatgtgtagt aaacgaagat aaaaaaacca tctatacaag gggagaagta
     7621 tagatggcaa aacacattac ggggaaaacg tcttactcat aagcctgctt gaacaggcgt
     7681 tactcagaca aatggattat atcgtaaatt gattttttgc gttaaattgg gttaaaccat
     7741 atatttaatg agtatgtgga tgaatataaa tggaattctt ggatgttatt ttagagtttc
     7801 ggacaatcga taaatttcca ttcgccgggt ttcaggtttt ctgtttccaa atgtgcgaat
     7861 cgccggcgat gaaggtgttg cacgcggttg ccggcggcgg cgatcatgcg tttgacttgg
     7921 tggtattttc cttcggtaat ggtcagcagc agggtggtcg ggttttccaa aacggcatcg
     7981 gcggcacaaa cggtttcgtt ttcgtcgtgg agcagcacgc cgtttttcaa ggtttcgcag
     8041 agcgtttctc ctgtggggtg tttgagcgtt acttcgtata gcttgggaat ttttctgctc
     8101 ggcgaagtca ggttgtggtt cagtttgccg tcgttggtaa tcagcaatac gccggtcgta
     8161 tctgcatcca gcctgccaac tgcctgcatg tcaatattgc gcatattgtc ggggaacagg
     8221 ctgaatatgc tgcggtagtg tttcggtttg tgcgaagttt cgtaatcttc aggcttgttg
     8281 agcaggatgt agaaataggg ttcgggaacg acggttactg cttccccgtc aagatccaac
     8341 gtttcgacgg atgaggaatc gatgtctgca tcggtgtcgt ccatacaggt tccgttgatg
     8401 gagacgtagc cgcccctaat cagccattgg cactgcttgc ggcttcctat gccttgatat
     8461 tgcaggtatt tgataagttt catgatggta tgggaaatgt gggatgaaaa agacaggact
     8521 gagaaagtcc tgtcatgtgc cgtatccgaa tcagcttcca atcagtttga ccctctgtcc
     8581 cggattgatg gtgttcaggt tgggattgag ccggcggatg tcgtcgatat ggatattgaa
     8641 gcgcgcggcg atacttttga aggtgtcgcc tttgcgcgcg gtgtaggata ctttttcaat
     8701 acgggtttgg gcaggggctg cctgcgccag gcggagtacc tgtccttttt ggatggtgtt
     8761 gcctttgatg ttgttggcga caatcaggtc ggctacgctg acgttgtagc gtttggcaat
     8821 gttgaacagg gtgtcgcctt ctacaacgcg gtggatgctg gcatggagcg gggagatttc
     8881 ggcttcgccg tcggcagctt tggctacgcg cgtttccaaa cgtgcccggc gtttgccgtc
     8941 ggcggcaacg gtatgttgcg gagatgagga aatgttgtgt tcggcaactg tgtcaggcgt
     9001 gccgatgacg gcggagatgg tttcttcagc ctgtcggcgc aggttgtttc gggcaacaag
     9061 ctgcatgagt tcgtctgccg cctgcatgtc gttttggggg atgatctgcg cgagtgttgc
     9121 ggtttgggtt tcagacggca tggcggtctg tttttcggtt tgaggttgcg ctgcggctgt
     9181 cgcaagggca ggttcggcaa tacggacaag gggatcgggt tccgtacgga cggttttctg
     9241 cggcaaaggt gcgacggtaa tgtccgctgt ctgtgcggcg gcgggtcgga ttcgggcaat
     9301 gccgacgttc accgtgcctg ccggcatatt ggaacggtag gtgtcgggcg tattgtcgat
     9361 gtcgatggaa acgacggatt ccgatgccgt ctgaagggtt ttgccgttct tggcgacaag
     9421 gatgctgcgt cctgcgttga caaggttgcc gttcaggttg ttgaggcgtt tgatgtcggc
     9481 aatgctcatg ccggttgccg tcgagatgtc ggacaggctg gttttggcgg caggcgtata
     9541 gacttcccat gaaaacaggc tgtcgggtgc ggcgttgagg tagttgcttt ggaaggtttg
     9601 gacggatgcg acaggaagca gcagtttgcg tttgcttttg gggatgaacg cggggacgtt
     9661 gaatgcgggg tttagggcga gcagctcgct ttgcgtgatg ccggcaagcc gggcgatggc
     9721 ttcgttgtcg agcggacggt ccggttcgat tgcctgaaaa tagggtttat tgtctatgtc
     9781 gctgatattc atgccgaaag attggggggc ggcaatgatg ttgcgcacgg cgagcagctt
     9841 gggaacatag ttgcgcgttt cgttgggcat acgcaggttt tcgtaggtcg gttcgagccc
     9901 ttgggcgcgg gcgcggttga tggcgcgtcc gacgtttcct tcaccccagt tgtaggcggc
     9961 aaaggcgagc ggccagtcgc cgaacagtcc atagaggtat tgcaggtagt tgagtgcggc
    10021 atcggtggcg gcgtaaacgt cgtgcctgcc gtcgtaaacc ggtgtttttt ccaagccgta
    10081 atgcctgccg gtagcgggca taaactgcca caggcccgat gcgccgacgt gtgatttggc
    10141 tttggtgacg aacgcgcttt cgatgaaggg aagcagggcg gcttcggcgg gcatattgcg
    10201 ttttttgact tcgttggcga tatggtacat atagggtcta ctccggttga tgaccctgtt
    10261 gaaatagctg tggcttgcga tgaatttgct ttcgtggcgg cgtaccagtt cgggattgac
    10321 ttcgcccatc cggaagcctt ggcgcagctc gctccacagg ctgccggatt ggaaatattg
    10381 ttttgtcggg ggcaggtcga gtattgaaga gtttaagcgc ataatcgcca aaccgatttg
    10441 gtgtgatgag gtgttttggg cgtataggaa acccggacaa acggacagac ctgatgcggt
    10501 cagagcgatg gttttgagtt tggacatgat ttatattcgg cggaataaac atattttatc
    10561 gtccgatggt actgtttgac tgaaaaagcg tcaagtttta caggaacttt atgcggattc
    10621 ggaaatgggc ggccgatgtg ttttttgaca gaaatcctgt ttggaataga atatcggcag
    10681 gcaatctgtt tgaaacggac gcaatatgga ttcatggttt gaagatacgg cgatggggcg
    10741 gtatgttgca aaattggaac aggatttctt cgggcggtat ctggattcat accgtttttc
    10801 gggaatgtgt gcggttcagg tgggcggtcc gtggctgagc ctgtctgaag atgttgtctg
    10861 tgtgccgcga gatatgtcga tgtcggcgga aaatatggct ttggcggatg tttctgcgga
    10921 tatgctgctt ttcccgcata ctctggaagg cggtgttcct tcgcaaatcc tgtcggaagc
    10981 gcaccggata ttgaaaccgt gcggacgttt gatgctgacg ggtttcaatc cgtattcgct
    11041 ctggggattc agccgttggt ttgacggcga acgcctgccg gaaaaacggt tttgtctgcc
    11101 gctgcccgag ttgaaaaggc agcttgcgga tgtcggtttc gatattgaat ttgggaaatt
    11161 tatggtgtat ctgccgcccg tttcgtcgct cgggcaaata cgcttttggc ggtttatgga
    11221 aaaggcgggc gaccgttggt ggccgcagtg tgccgcagtg tacggtttgg ttttggtcaa
    11281 aagggcggcg ggcgtaacgc ccctgcccgc gtgggacggg tatttgggcg gcaaagccct
    11341 tgcggcgggt gcggcaagga ttgcggatta gggacagccg tctttcagac ggcatctgtc
    11401 agaagaaatg tcgggagggg ttatgcctga attgccggaa gtggaaacga cgttgcgcgg
    11461 catcgcgccg catattgaag ggaaaacggt ggaagccgtg gtattgcgcc aattgaagct
    11521 gcgctggcag attaatcccg atttggggga gattttgtcc ggccggcagg tgttgtcctg
    11581 cggcaggagg gcgaaatacc tgcttatccg ctttcaaacg ggcgtgctgc tgattcactt
    11641 ggggatgtcg ggcagcttgc ggatttttac gccgtcggac ggacgtatcg gcaggccgga
    11701 cagacacgat cacgtcgata ttgtgttttc agacggcacg gtcatgcgtt accgcgatcc
    11761 gagaaagttc ggcgcgatac tttggtatga gggaatcgaa gaacatcatc cgctgttgga
    11821 aaaactgggg ccggagcctt tgtcggaggc attttgtgcg gattatctgt atgcaaggct
    11881 gaaggcgcag aagcgcgcgg tcaaacttgc cctgatggac aatgcggtcg tggtcggtgt
    11941 gggcaacatt tatgccaacg agagcctgtt tagggcgggc atttcgccct accgtcctgc
    12001 caaccgcctg aaaaagaaag agtgcgcact tttggttgaa accgtcaaag cggtgttgca
    12061 gcgcgccatt gaaacgggcg gcagtacctt gagggatttt gtggacagcg acggcaaaag
    12121 cggctacttc caacaggaat atacagtgta cgggcggcac aatcagccgt gcccccagtg
    12181 cggcggtttg gttgtgaaag aaactttggg gcagcgcggc acgttttatt gcccgaactg
    12241 tcagaaatag gactgaaaac ggtttcagac ggcattttat cggtatgccg tccgaacgtt
    12301 tcaacaacaa acaccgatta tcgggaaaga attgctcatg tcttcaaata aagcttcatt
    12361 ttttacacgt ctgcgccgct tgtgccgttt ggcggtctgg ctgttcaaaa ccgggaaaaa
    12421 cctgcgcggt attgacggcg gttgccccga gtcgcgcaat cgggcggtaa tcgagttggg
    12481 caggggggtt ttggcggctt tggatatcgg attggaggtg ggcagacccg cacccgaaca
    12541 tccgaacggt gtcttggttg ccgccaacca cgtgtcctgg ctggatattt tcgcgatgag
    12601 cgcggtttat ccgagcagct ttatcgccaa gcaggaaatc aaaagctggc cggtattggg
    12661 caagatgggg cagaacgcgg gaacggtgtt catcaaccgc aattcgcggc gcgacatcga
    12721 accgattaac cgcgccgtct gcgaaacctt gcaacgcggt caaaacgtca gttttttccc
    12781 cgaagcgcgg acttcctccg gattggggct tttgccgttc aaagccgcgc tgttccaatc
    12841 cgccatcgat gcgggggcaa aggttttggc ggtcgcgctg cgttattatg acgaaacggg
    12901 aaaaaggaca gctcgtccct catatgccga tgtcggtttg ccgacctgcc tgtggcgcat
    12961 cgtgtctatg aaaaaattga cgataagagt cgatttcgtt tgcgtggcgg atgcggcgga
    13021 aagcgaagac cgttatgctt taaaagataa aatcgaagaa agcatccgtg ccgttgtcgc
    13081 cgacgatgcg gatatcgctg tctgaaaccg gttgtcggaa tgtggcagta tgattcgctt
    13141 ttgtgga
//
LOCUS       DAWGNT010000041        12918 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.041, whole genome shotgun sequence.
ACCESSION   DAWGNT010000041 DAWGNT010000000
VERSION     DAWGNT010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12918
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.041"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(333..1109)
                     /gene="lpxA"
                     /locus_tag="WHR98_000847"
     CDS             complement(333..1109)
                     /gene="lpxA"
                     /locus_tag="WHR98_000847"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEZ2307548.1"
                     /translation="MTLIHPTAVIDPKAELDSGVKVGAYTVIGPNVQIGANTEIGPHA
                     VINGHTSIGENNRIFQFASLGEIPQDKKYRDEPTKLIIGNGNTIREFTTFNLGTVTGI
                     GETRIGDDNWIMAYCHLAHDCVVGNHTIFANNASLAGHVTVGDYVVLGGYTLVFQFCH
                     IGDYAMTAFAAGVHKDVPPYFMASGYRAEPAGLNSEGMRRNGFTAEQISAVKDVYKTL
                     YHRGIPFEEAKADILRRAETQAELAVFRDFFTQSTRGIIR"
     gene            complement(1152..1832)
                     /locus_tag="WHR98_000848"
     CDS             complement(1152..1832)
                     /locus_tag="WHR98_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HEZ2307549.1"
                     /translation="MERYKNAVGEDKAAELYLLNLSLSRELFHVVSIFEIVLRNKIDI
                     CLQQAFKDRNWLYNSIQPQTNPALKYQGCFLRNGTKESAELIKVALSKIQNNSGGKFD
                     HNQLVAGLGFGFWRYLFAGGKDAQFDATGKVLMKVFPKKPKSTPSVQYNQKWIFRELS
                     NINKFRNRLAHHEPICFKGAIKDTNYARNIHQSIFELLNYMDVDTASVFSHFSDQVIA
                     VCDEIDKL"
     gene            complement(2039..2488)
                     /gene="fabZ"
                     /locus_tag="WHR98_000849"
     CDS             complement(2039..2488)
                     /gene="fabZ"
                     /locus_tag="WHR98_000849"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEZ2307550.1"
                     /translation="MDVQLPIEAKDIQKLIPHRYPFLQLDRITAFEPMKTLTAIKNVT
                     INEPQFQGHFPDLPVMPGVLIIEAMAQACGTLAILSEGGRKENEFFFFAGIDEARFKR
                     QVIPGDQLVFEVELLTSRRGIGKFNAVAKVDGQVAVEAVIMCAKRVV"
     gene            complement(2524..3567)
                     /gene="lpxD"
                     /locus_tag="WHR98_000850"
     CDS             complement(2524..3567)
                     /gene="lpxD"
                     /locus_tag="WHR98_000850"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEZ2307551.1"
                     /translation="MIPATYTLSQITAQLGGEWRGEDISVTAVRPLADAQAEHISFLA
                     NPKYKAEVHDSSAGAVIVSAKAADEFEGRNLIVADDPYLYFAKVARLFSPVVKVRGGI
                     HPTAVVEESATVPASCEIGANAYIGANTVLGEGCRILANAVVQHDCRLGDEVVLHPNA
                     VVYYGCTLGNRVEIHSGAVIGADGFGLAFAGDSWFKIPQTGAVTLGDDVEIGSNTNID
                     RGAMSDTTVGNGTKIDNQVQIGHNCKIGSHTVIAAKTGISGSVTIGSYCIIGGGVGTV
                     GHIEIADKTTIGGGTSVTHSITESGKHLAGIFPMSTHKEWARNAVYIHRLSEMNKRLK
                     TLEQQLSDGKDTQ"
     gene            complement(3600..4100)
                     /locus_tag="WHR98_000851"
     CDS             complement(3600..4100)
                     /locus_tag="WHR98_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HEZ2307552.1"
                     /translation="MTRLTRAFAAALIGLCCTAGAHADTFQKIGFINTERIYLESKQA
                     RKIQKTLDSEFSARQDELQKLQREGLDLERQLAEGKLRNAKKAQAEEKWRGLVAAFRK
                     KQAQFEEDYNLRRNEEFASLQQNANRVIVKIAKQEGYDVILQNVIYVNTQYDVTDSVI
                     KEMNAR"
     gene            complement(4166..6559)
                     /gene="bamA"
                     /locus_tag="WHR98_000852"
     CDS             complement(4166..6559)
                     /gene="bamA"
                     /locus_tag="WHR98_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEZ2307553.1"
                     /translation="MKLKQIASALMVLGISPLALADFTIQDIRVEGLQRTEPSTVFNY
                     LPVKVGDTYNDTHGSAIIKSLYATGFFDDVRVETADGQLLLTVIERPTIGSLNITGAK
                     MLQNDAIKKNLESFGLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARN
                     RVDIDITIDEGKSAKITDIEFEGNQVYSDRKLMRQMSLTEGGIWTWLTRSNQFNEQKF
                     AQDMEKVTDFYQNNGYFDFRILDTDIQTNEDKTKQTIKITVHEGERFRWGKVSIEGDT
                     NEVPKAELEKLLTMKPGKWYERQQMTAVLGEIQNRMGSAGYAYSEISVQPLPNAETKT
                     VDFVLHIEPGRKIYVNEIHITGNNKTRDEVVRRELRQMESAPYDTSKLQRSKERVELL
                     GYFDNVQFDAVPLAGTPDKVDLNMSLTERSTGSLDLSAGWVQDTGLVMSAGVSQDNLF
                     GTGKSAALRASRSKTTLNGSLSFTDPYFTADGVSLGYDVYGKAFDPRKASTSIKQYKT
                     TTAGAGIRMSVPVTEYDRVNFGLVAEHLTVNTYNKAPKHYADFIKKYGKTDGTDGSFK
                     GWLYKGTVGWGRNKTDSALWPTRGYLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKT
                     FTLMLGGEIGYANGYGKTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYG
                     GNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWDGKTYDDNSSSATGGRVQNIYG
                     AGNTHKSTFTNELRYSAGGAVTWLSPLGPMKFSYAYPLKKKPEDEIQRFQFQLGTTF"
     gene            complement(6616..7956)
                     /gene="rseP"
                     /locus_tag="WHR98_000853"
     CDS             complement(6616..7956)
                     /gene="rseP"
                     /locus_tag="WHR98_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEZ2307554.1"
                     /translation="MHTLLAFIFAILILVSLHEFGHYIVARLCGVKVVRFSVGFGKPF
                     FTRKRGDTEWCLAPIPLGGYVKMVDTREGEVSEADLPYAFDKQHPAKRIAIVAAGPLT
                     NLALAVLLYGLSFSFGVTELRPYVGTVEPDTIAARAGFQSGDKIQSVNGVAVQDWGSA
                     QTEIVLNLEAGKVAVGVQTASGAQTVRTIDAAGTPEAGKIAKNQGYIGLMPFKITTVA
                     GGVEKGSPAEKAGLKPGDRLTAADGKPIASWQEWANLTRQSPGKKITLNYERAGQTHT
                     ADIRPDTVEQSDHTLIGRVGLRPQPDRAWDAQIRRSYRPSVIRAFGMGWEKTVSHSWT
                     TLKFFGKLISGNASVSHISGPLTIADIAGQSAELGLQSYLEFLALVSISLGVLNLLPV
                     PVLDGGHLVFYTAEWIRGKPLGERVQNIGLRFGLALMMLMMAVAFFNDVTRLLG"
     gene            complement(7991..9226)
                     /locus_tag="WHR98_000854"
     CDS             complement(7991..9226)
                     /locus_tag="WHR98_000854"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEZ2307555.1"
                     /translation="MPSENASDGIRYKVIPIMTPQVLTILGSTGSIGESTLDVVSLHP
                     EKFRVFALAGHKQVEKLAVQCRTFRPEYAVVADAEHAARLEALLKGDGTATQVLHGAQ
                     ALVDVASADEVSGVMCAIVGAVGLPSALAAAQKGKTIYLANKETLVVSGALFMETARA
                     NGAAVLPVDSEHNAVFQVLPRDYAGRLNEHGIASIILTASGGPFLTADLNTFDSITPD
                     QAVKHPNWRMGRKISVDSATMMNKGLELIEAHWLFNCPPDKLEVVIHPQSVIHSMVRY
                     RDGSVLAQLGNPDMRTPIAYCLGLPERIDSGVGDLDFDALSALTFQKPDFDRFPCLKL
                     AYEAMNAGGAAPCVLNAANEAAVAAFLDGQIKFTDIAKTVAHCLAQDFSDGIGDIGGL
                     LAQDARTRAQARAFIGTLR"
     gene            complement(9231..10028)
                     /locus_tag="WHR98_000855"
     CDS             complement(9231..10028)
                     /locus_tag="WHR98_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEZ2307556.1"
                     /translation="MLKQRVITAMWLLPLMLGMLFYAPQWLWAAFCGLIALIALWEYA
                     RMSGLCKIKTNHYLAATLVFGVVAYAGGWMLPNLVWYVVLAFWLAVMPLWLRFKWRLN
                     GGWQVYAVGWLLVMPFWFALVSLRPHPDDALPLLAVMGLVWVADICAYFSGKAFGKHK
                     IAPAISPGKSWEGAIGGAVCVAVYMTAVRSAGWLAFDTGWFDTVLIGLVLTVVSVCGD
                     LLESWLKRAAGIKDSSNLLSGHGGVFDRTDSLIAVISVYAAMMSVLN"
     gene            complement(10031..10777)
                     /locus_tag="WHR98_000856"
     CDS             complement(10031..10777)
                     /locus_tag="WHR98_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEZ2307557.1"
                     /translation="MKSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGL
                     DALENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNM
                     RLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGV
                     SEITEDTLAKHLMLGDAPEPDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGK
                     ALDDAVASFQKRERRFGRTSEQLPIEQQRN"
     gene            complement(10833..11390)
                     /gene="frr"
                     /locus_tag="WHR98_000857"
     CDS             complement(10833..11390)
                     /gene="frr"
                     /locus_tag="WHR98_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEZ2307558.1"
                     /translation="MINDIQKTAEGKMQRSVEVLKENLAKVRTGRAHTGLLDQVEVEY
                     WGSMVPVSQVANVTLLDARTIGVKPFEGNMAAKVEKAIRDSNLGLNPAAVGDLIRVPM
                     PMLTEERRKDLIKVVRGEAEEGRVSIRNVRRDANDHIKKLLKDKEISEDEARRGEEAV
                     QKLTDKYITEADKLLTAKEEDLMAI"
     gene            complement(11570..12697)
                     /locus_tag="WHR98_000858"
     CDS             complement(11570..12697)
                     /locus_tag="WHR98_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEZ2307559.1"
                     /translation="MNTSQRNRLVSRWLNSYERYRYRRLIHAVRLGGAVLFATASARL
                     LHLQHGEWIGMTVFVVLGMLQFQGAIYSKAVERMLGTVIGLGAGLGVLWLNQHYFHGN
                     LLFYLTVGTASALAGWAAVGKNGYVPMLAGLTMCMLIGDNGSEWFDSGLMRAMNVLIG
                     AAIAIAAAKLLPLKSTLMWRFMLADNLTDCSKMIAEISNGRRMTRERLEQNMVKMRQI
                     NARMVKSRSHLAATSGESRISPAMMEAMQHAHRKIVNTTELLLTTAAKLQSPKLNGSE
                     IRLLDRHFTLLQTDLQQTVALINGRHARRIRIDTAINPELEALAEHLHYQWQGFLWLS
                     TNMRQEISALVILLQRTRRKWLDAHERQHLRQSLLETREHG"
     gene            complement(12773..12848)
                     /locus_tag="WHR98_000859"
     tRNA            complement(12773..12848)
                     /locus_tag="WHR98_000859"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12813..12815),aa:Thr,seq:cgt)
BASE COUNT         2529 a         3253 c         3892 g         3244 t
ORIGIN      
        1 ttttaaaaca ccacttttgt agtgtcctgt aatttcagca cagaatattc aataagacaa
       61 tatgttcttt tgaaaaatac ttttggtttt ttctccgaaa gcaggtcggt tcaagctgcg
      121 gaaattgttt gcaattcttt aaaagcagcg gcggaggtca caatgaaatg tccgaatagg
      181 gatgtggcgg gcggcagaaa tcatcaatgc tgccgactgc catacttctg aaatctacaa
      241 aatgatgcat cgatcaaaca atataccgct ttaaaaaaac cgatgccgtc tgaaacgctt
      301 tcggggtttc agacggcatc aaaagggtac ggtcagcgga tgatgccgcg cgtcgattgt
      361 gtgaaaaagt ctcggaatac ggcaagctcg gcttgggttt cggcgcggcg gaggatgtct
      421 gccttggcct cttcaaacgg aatgccgcga tggtagaggg ttttgtacac gtctttgacg
      481 gcggaaatct gttctgcggt aaaaccgttg cggcgcatgc cttcgctgtt gagccccgcc
      541 ggttcggcgc ggtagcccga tgccataaag tagggcggta cgtctttgtg tacgcctgcg
      601 gcgaaggcgg tcatagcgta gtcgccgatg tggcagaatt ggaaaaccag cgtgtagccg
      661 cccaaaacga cgtagtcgcc gacggtaacg tgtccggcaa gcgaggcgtt gttggcgaag
      721 atggtgtggt tgccgaccac gcagtcgtgc gcgaggtggc agtacgccat aatccagttg
      781 tcgtcgccga tacgggtttc gccgatgccg gttaccgtgc ctaaattaaa ggtggtgaat
      841 tcgcggatgg tgttgccgtt gccgataatc agcttggtcg gctcgtcgcg gtattttttg
      901 tcctgcggga tttcgccgag gctggcaaat tggaaaatgc ggttgttttc gccgatgctg
      961 gtgtggccgt tgatgacggc gtgcgggccg atttcggtat tcgcgccgat ttggacgttg
     1021 gggccgataa cagtgtacgc gccgactttg acgccggagt cgagttcggc tttggggtcg
     1081 atgacggcgg tcgggtggat gagggtcatg ttttgaatac tccgctgctt gttaagacaa
     1141 ataatagaaa attacagttt gtcgatttca tcgcagaccg caatcacttg atcgctaaaa
     1201 tggctaaata ctgaagcagt atctacatcc atgtaattaa gcagttcaaa aatagattgg
     1261 tgaatatttc tagcgtagtt ggtatctttt attgcacctt taaaacaaat cggctcgtga
     1321 tgtgccaaac gattacggaa tttgttaata ttggaaagtt ctcgaaaaat ccatttttgg
     1381 ttatattgca cacttggtgt agatttgggc ttttttggaa aaactttcat caatactttc
     1441 cctgtagcat caaattgggc atctttccct cctgcaaaca gataccgcca aaaaccgaat
     1501 cctagtcctg caaccaattg gttgtggtca aactttcccc cgctattatt ttgtatttta
     1561 gataatgcaa ccttgattaa ttcagcagat tctttcgtgc catttcttaa aaagcaacct
     1621 tgatatttta atgcgggatt cgtctgtggc tgtatgctgt tatataacca gtttctgtct
     1681 ttaaacgcct gctgaaggca aatgtcaatt ttgtttctta aaacaatctc aaatattgaa
     1741 acaacatgaa aaagttctct tgataaagat aaattcaata aatacaattc agctgctttg
     1801 tcttccccaa cggcattttt ataccgttcc attctgaaat cagaaaaaat actacagcat
     1861 tccttataat ccacgctaac acctgattct ttatttttaa attgacgttt caaactatat
     1921 ttgatacagt taggtaaaac taatccccac cgtgtccctg ggtttgaata aacctaaacc
     1981 ggtgggtttt ctttttatta ggtcgtctga aactttcaga cgaccttttt ccgaacgctc
     2041 aaaccacgcg tttggcgcac ataatcacgg cttcaacggc aacttgcccg tccactttgg
     2101 cgacggcgtt gaatttgccg atgccgcgcc ggctggtcag cagctcgact tcaaagacga
     2161 gttggtcgcc ggggatgact tggcgtttga aacgggcttc gtctatgccg gcgaagaaga
     2221 agaattcgtt ttctttgcgc ccgccttcgc tcaaaatcgc caacgtgccg cacgcctgcg
     2281 ccatcgcttc gatgatgagt acgccgggca tcacgggcag gtcggggaaa tggccttgga
     2341 actgcggctc gtttatggtg acgtttttaa tcgcggtcag ggttttcatc ggctcgaagg
     2401 cggtgatgcg gtcgagctgg agaaacggat agcggtgggg gatgagtttt tggatgtctt
     2461 tggcttcgat ggggagttga acgtccatgt ctgtcgtatt ccttgaataa agtcggtttg
     2521 gatttattgc gtgtctttgc cgtctgaaag ctgctgttcc agcgttttga ggcgtttgtt
     2581 catttcgctt aagcggtgga tgtaaacagc gttgcgcgcc cattctttat gggtggacat
     2641 cgggaagatg ccggcgaggt gtttgccgct ttcggtaatg ctgtgggtga cggacgtgcc
     2701 gccgccgatg gtggttttgt cggcgatttc gatgtgtccg accgtaccga cgccgccgcc
     2761 gatgatgcag tagctgccta tggttacgct gcctgagatg ccggttttgg cggcgatgac
     2821 ggtgtgcgaa ccgattttgc agttgtgtcc gatttggact tggttgtcga ttttggtgcc
     2881 gttgccgacg gtggtgtcgc tcatcgcgcc ccggtcgatg ttggtgttcg agccgatttc
     2941 tacgtcgtcg cccagcgtta ccgcgccggt ttgcgggatt ttgaaccacg aatcgccggc
     3001 gaaggcgagt ccgaaaccgt ccgcgccgat gaccgcgccg ctgtggatct cgacgcgatt
     3061 gccgagtgtg cagccgtaat aaacgacggc gttgggatgt aaaacaactt catcacctaa
     3121 acggcaatcg tgttggacga cggcgtttgc caagatgcgg cagccttcgc cgagtacggt
     3181 gttcgcgccg atgtaggcgt tcgcgccgat ttcgcagctt gcgggaacgg tggcactctc
     3241 ttcgacgacg gcggtcggat ggatgccgcc gcgcactttg acgacgggtg aaaacaggcg
     3301 ggcgactttg gcgaaataga gatagggatc gtcggcgaca atcaggttgc gcccttcaaa
     3361 ttcgtctgcc gctttggcgg aaacgatgac cgcgcccgcg ctgctgtcgt ggacttcggc
     3421 tttgtatttc gggttggcga ggaagctgat gtgttccgcc tgcgcgtctg cgagcgggcg
     3481 cacggcggta acggaaatgt cctcgccgcg ccattcgccg ccgagctgcg cggtgatttg
     3541 ggacagggtg taggtggccg gaatcatggt tttcctgttc ggtatgccgt ctgaaagggt
     3601 cagcgggcgt tcatttcttt aatgacgctg tcagtaacgt cgtattgggt gttgacgtaa
     3661 atcacgttct gcaaaatgac atcgtaacct tcctgtttgg cgattttgac gatgacgcgg
     3721 ttggcgtttt gctggaggga ggcaaactct tcgttgcggc ggaggttgta gtcttcttca
     3781 aactgcgcct gttttttgcg gaacgctgcg accagcccgc gccatttttc ttcggcttgc
     3841 gccttttttg cgtttctgag tttgccttcg gcaagctgcc tttccaaatc cagaccttcg
     3901 cgttgcagtt tttgcaattc gtcctgacgg gcggaaaatt cgctgtccag cgttttttga
     3961 atcttgcgcg cctgcttgga ttcgaggtag atgcgctcgg tgttgataaa gccgattttt
     4021 tggaaggtgt cggcgtgcgc gcctgcggtg cagcacaaac cgatcagagc cgcggcaaac
     4081 gcgcgggtca aacgggtcat ggtaaaactc cttcgaatgt tgccgcgaaa tgccgtctga
     4141 agggcttcag acggcatttg cgggattaga acgtcgtgcc gagttggaat tggaagcgtt
     4201 ggatttcgtc ttccggtttt ttcttcagcg ggtaggcgta gctgaatttc atcgggccta
     4261 aaggcgagag ccaggtaacc gcgccgccgg cggaatagcg caattcgttg gtaaaggtgg
     4321 atttatgggt attgccggcg ccgtaaatgt tttgaaccct gccgccggtc gcggaactgc
     4381 tgttgtcgtc gtaggttttg ccgtcccaca cgctgcctgc gtcggcaaac aggctcaggc
     4441 ggacggtgcg cgcgtctttc gcgccgggca tcgggaagag cagctcggcg gagacgttgg
     4501 cttttttgtt gccgccgtag ctgatttttt cgccgtattc gtcatagact ttcggaccaa
     4561 gtgtgccgct ttcgtaacct cgtaccgaac ccaggccgcc gccgtagaag ttttcaaaga
     4621 aggggatttc tttggttttg ccgtagccgt tggcatagcc gatttcgccg ccaagcatca
     4681 gtgtgaaggt tttgctcagg gggaagaacc aggtttggtt gtgggtggcg gagtagtatt
     4741 gcagtttgct gccgggcagg gcgatttcgg cgttcacgcc cgtcaggtag ccgcgcgtcg
     4801 gccataacgc gctgtcggtt ttgttgcgcc cccagccgac ggtacctttg tacagccagc
     4861 ctttgaagct gccgtctgtg ccgtcggttt tgccgtattt cttgataaag tcggcatagt
     4921 gtttgggcgc tttgttgtag gtgttgacgg tcaggtgttc tgccaccaaa ccgaaattca
     4981 cgcggtcgta ttcggtaaca ggcacgctca tgcggatgcc tgcgcctgcc gtggtggttt
     5041 tatattgttt gatgctggtc gatgctttgc gcgggtcgaa ggcttttccg taaacatcgt
     5101 agcccaggct gaccccgtct gccgtgaagt acgggtcggt aaacgacagc gagccgttga
     5161 gcgtggtttt gcttcgtgag gcgcgcaggg cggccgactt gcccgtaccg aacaggttgt
     5221 cttgggaaac gcctgcggac atgaccaggc cggtatcctg tacccagccc gcgctcaagt
     5281 cgagcgagcc ggtggaacgt tcggtcaggc tcatgttcaa atcgactttg tcgggtgtgc
     5341 cggcaagcgg gacggcatca aactgtacgt tgtcgaagta gcccaaaagc tcgacgcgct
     5401 ctttggagcg ttgcagcttg gaggtgtcgt aaggcgcgga ttccatttgg cgcaattcgc
     5461 ggcgcacgac ttcgtcgcgg gttttgttgt tgccggtgat gtggatttcg ttgacgtaga
     5521 ttttccggcc cggttcgatg tgcaggacga aatcgacggt tttggtttcg gcgtttggca
     5581 gcggctgtac gctgatttcg ctgtatgcgt agcctgccga gcccatgcgg ttctgaatct
     5641 cacccaaaac ggcggtcatc tgctggcgtt cgtaccattt gccgggcttc atggtcagca
     5701 gtttttccag ttcggctttg gggacttcgt tggtgtcgcc ttcgatggag actttgcccc
     5761 aacggaaacg ttcgccttcg tggacggtga ttttgatggt ctgcttggtt ttgtcttcgt
     5821 tggtttggat gtcggtatcg aggatgcgga aatcgaagta gccgttgttt tggtagaagt
     5881 cggttacttt ttccatgtct tgggcaaatt tctgctcgtt gaattggttg cttcgtgtca
     5941 gccatgtcca aatgccgcct tcggtcagcg acatctgccg catcagtttg cggtcggaat
     6001 agacttggtt gccttcaaat tcgatgtcgg tgattttggc ggatttgccc tcgtcaatcg
     6061 tgatgtcgat gtcgacgcgg ttgcgggcga gtttggttac tttgggcgtg atttggatat
     6121 tgagtttgcc gcgcccgagg tattcttctt tcaggccggc gactgcctga ttgagtgtcg
     6181 cctgattaaa gtattgcgac tgcgccagcc cgaacgattc gagatttttc ttaatggcgt
     6241 cgttttgcag catttttgcg ccggtgatgt tgagcgagcc gatggtgggg cgttcgatga
     6301 cggtcagcag gagctgcccg tccgcagtct cgacgcgtac gtcgtcaaag aaaccggtgg
     6361 cgtacaggct tttgatgatg gcactgccgt gtgtgtcgtt gtaggtgtcg ccgactttga
     6421 cgggcaggta gttgaatacg gtactcggct cggtacgctg caagccttcg acgcggatgt
     6481 cttggatggt gaagtcggca agtgccaaag gcgatatgcc caagaccatc agtgcggaag
     6541 caatctgttt cagtttcatt gtcagttcct tgtggtgcgg aatgcggttt cagacggcat
     6601 tccgaaacgt aaaatctaac cgagcagccg ggtaacgtcg ttgaagaagg cgaccgccat
     6661 catcagcatc atgagggcaa gcccgaagcg caaaccgatg ttttggacgc gttcgcccaa
     6721 aggtttgccg cgtatccatt cggcagtata aaacacgagg tggccgccgt ccaaaacggg
     6781 gacgggcagt aggttcagca cgccgaggct gatgctgacc agtgccaaaa attccaaata
     6841 actttgcaag ccgagttcgg cggactgtcc ggcaatgtcg gcaatggtca gcggcccgga
     6901 aatatggctg acggaggcgt tgccgctgat tagtttgccg aaaaatttga gggttgtcca
     6961 cgagtgggaa acggtttttt cccagcccat gccgaatgcg cggataacag acggacggta
     7021 gctgcggcgg atttgcgcgt cccacgccct gtccggctgc ggacggaggc cgacgcgccc
     7081 gatcagggtg tggtcggact gttcgacagt atcggggcgg atgtcggcgg tatgggtttg
     7141 tccggcgcgt tcgtagttca gggtgatttt tttgccgggg ctttggcggg tcaggtttgc
     7201 ccattcttgc catgaggcga tgggtttgcc gtcggcggca gtcagcctgt cgcccggttt
     7261 caggcctgct ttttcggcgg ggctgccttt ttccacgccg ccggcaacgg ttgtgatttt
     7321 aaagggcatc agtccgatgt agccttggtt ttttgcgatt ttaccggctt ccggcgtgcc
     7381 tgcggcatcg atggtgcgga cggtttgcgc gcccgatgcc gtctgaacgc cgacggcgac
     7441 tttgccggct tcgaggttga ggacgatttc ggtttgcgcg ctgccccaat cttggacggc
     7501 aacgccgttg acggattgta ttttgtcgcc gctttggaag ccggcgcggg cggcaatggt
     7561 gtcaggttcg actgtgccga cgtaggggcg cagttcggtt acgccgaagg aaaagctcag
     7621 tccgtacagc aaaaccgcca gtgcgaggtt ggtcagtggg ccggcggcga cgatggcgat
     7681 gcgcttggcg gggtgttgtt tgtcaaaagc gtagggtaaa tcggcttctg atacttcgcc
     7741 ttcgcgcgtg tcgaccattt tgacgtaacc gcccaacgga atcggggcga ggcaccattc
     7801 ggtgtcgccg cgctttcggg tgaaaaacgg tttgccgaag ccgacggaaa agcgtacgac
     7861 tttgacaccg cacaatctgg caacgatgta gtgtccgaac tcgtgcaggc tgaccaaaat
     7921 caggatggcg aagataaaag ctagaagggt gtgcaaatgg ttttcctttg ataacggtgt
     7981 tcggacggca tcagcgcagt gtgccgataa atgcccgcgc ttgtgcgcgt gtccgggcat
     8041 cttgcgccaa gagcccccct atgtcgccta tgccgtctga aaagtcttgt gcgagacaat
     8101 gggcgacggt tttggcaatg tcggtaaact taatctgccc gtccaaaaag gcggcgacgg
     8161 cggcttcgtt ggcggcgttc aatacgcagg gcgcggctcc gcctgcgttc atggcttcat
     8221 aggcgagctt caggcagggg aagcggtcaa agtcgggctt ttggaaggtc agcgcggaca
     8281 atgcgtcgaa atccaggtcg ccgacacccg aatcgatgcg ctcgggcaaa cccaaacaat
     8341 aagcgatggg cgttcgcata tcgggattgc ccagttgcgc caacacggag ccgtcgcggt
     8401 agcgcaccat gctgtgtatc acggattgcg gatggatgac gacttcgagt ttgtcgggcg
     8461 gacagttgaa cagccaatgc gcttcaatca gctccaaacc tttgttcatc atggtggcgg
     8521 aatcgacgga gattttgcgt cccatacgcc aattggggtg tttgaccgct tggtcgggcg
     8581 taatgctgtc gaacgtgttt aaatcggcgg tcagaaacgg gccgccggaa gcggtcagga
     8641 taatcgaagc gatgccgtgt tcgttcagac ggccggcgta atcgcgcggc aaaacttgga
     8701 aaacggcgtt gtgttcgctg tcgacgggca gcactgccgc gccgtttgca cgggcggttt
     8761 ccataaacaa cgcgccggaa accaccagcg tctctttgtt cgccagataa atggttttgc
     8821 ctttttgcgc cgctgcgagc gcggaaggca gccccaccgc cccgacgatg gcgcacatga
     8881 caccgctgac ttcgtcggca gaggcaacgt caaccaatgc ctgcgcgccg tgtaaaacct
     8941 gcgtcgccgt gccgtcgcct ttcaacaaag cttcaagccg ggcggcgtgt tcggcatcgg
     9001 caacgacggc atattcgggg cggaacgtcc ggcattgcac cgccagtttc tcgacctgct
     9061 tatgccctgc cagcgcgaat acgcggaatt tttcggggtg gagggagaca acgtccagcg
     9121 tgctttcgcc tatgctgccg gtactgccta atatggtcag gacttgtggt gtcataatgg
     9181 ggataacttt ataccggatg ccgtctgaag cgttttcaga cggcatagaa tcaatttaaa
     9241 accgacatca tcgccgcata gacgctgata acggcaatca ggctgtcggt acggtcgaac
     9301 acgccgccgt gtccggacag caggttgctg ctgtctttaa tgcccgccgc gcgcttgagc
     9361 cagctttcca acaggtcgcc gcatacgctg acaacggtca gcaccaaacc gattaacacg
     9421 gtatcgaacc agcctgtatc gaatgccagc cagccggcac ttcgtacggc ggtcatgtac
     9481 acggccacgc aaaccgcgcc gccgattgca ccttcccagc ttttgccggg gctgattgcc
     9541 ggtgcgattt tgtgtttgcc gaacgccttg ccgctgaaat acgcgcaaat atcggcaacc
     9601 cacaccaaac ccatcacggc gagcagcggc agggcatcat cgggatgcgg gcgcagggat
     9661 acgagcgcga accaaaacgg catgaccaga agccagccga cggcataaac ctgccaaccg
     9721 ccgttgagcc tccatttgaa tctcaaccac aaaggcataa cggcgagcca aaacgccaaa
     9781 acaacatacc aaaccaaatt aggcagcatc cagccgcccg cataggcaac cacgccgaaa
     9841 accaaggttg cggcgaggta atggttggtt ttgattttgc acaagccgct catacgggca
     9901 tattcccaca aggcaatcag ggcaatcagt ccgcaaaatg cggcccacaa ccattgcggc
     9961 gcgtaaaaca gcatgcccag catcagcggc agcagccaca tggcggttat tacccgttgt
    10021 ttcagcatat tcagttcctt tgctgttcga taggcagttg ctcggaggtg cgtccgaacc
    10081 gccgttcgcg tttttggaac gaagcgacgg catcgtccaa agccttgccg tcaaaatcgg
    10141 gccacaaaat atcggtgaaa tacagttctg catatgccat ctgccagagc aggaaattgc
    10201 tgatgcgcgt ttcgccgccg gtgcggatga acaaatccgg ttccggtgca tcgcccagca
    10261 tcaagtgttt cgccagcgtg tcttccgtaa tctcggatac gccttcggca atcagtttgt
    10321 ttgccgcctg caaaatatcc cagcggccgc cgtaatcggc ggcaatgctc agggtcaggc
    10381 cggtattgtt tgccgtcaac gcttccgcct cttcgatgcc ttgcagaatc tgccggttga
    10441 agcgttcgcg gctgcccaat atcttcaggc gcatattgtt ttcgtgcagg cgacgtacct
    10501 gtttttgcaa agcctgtaaa aacagcccca tcaggaacga aacttcgtct tcggggcggc
    10561 gccagttttc ggttgaaaag gcaaacacgg tcagatattg cacacccagt ttggcgcaat
    10621 gcttcaccat attttccaac gcgtccaaac cgcgtttgtg tcccattatg cgcgggagga
    10681 aacgtttttt cgcccaacgg ccgttgccgt ccataatcac ggcgatatgc ttgggaatgg
    10741 cggtgtgttc caaaacggcc tgcgtgctgc ttttcatgtc tgcctttcgc ggttcggcat
    10801 tcaaatgccg tctgaacgcc gaaccgtgca ggttaaattg ccatcaaatc ttcttctttg
    10861 gcagtcagga gtttgtcggc ttcggtaatg tatttgtcgg tcagtttttg aaccgcttct
    10921 tcgccgcgac gtgcctcgtc ttcggaaatt tctttgtctt tgaggagttt tttgatgtgg
    10981 tcgttggcat cgcggcgcac gttgcggatg gagacgcggc cttcttccgc ttcgccgcgt
    11041 acgactttaa tcaggtcttt gcggcgttct tcggtcagca tgggcatcgg cacgcggatc
    11101 aggtcgccga cagctgccgg gttcagcccc aagtttgaat cgcggatagc tttctcgact
    11161 ttggccgcca tattgccctc aaacggtttc acgccgatgg tgcgcgcgtc cagaagcgtt
    11221 acgttggcaa cctggctgac ggggaccatg ctgccccagt attcgacttc cacttggtcg
    11281 agcaggccgg tatgcgcgcg gccggtacgc actttcgcca gattttcttt cagtacttcg
    11341 accgaacgct gcattttgcc ttcggctgtt ttttgaatat cgttgatcat attgttcttt
    11401 cggtgggata aggtgggcgg gagaccgtct gaacgcgttt caagccgttc agacggcata
    11461 aagaccgtta accgcgaata gtaccgttat tcgggcatga cgacaaggta ggcggattgg
    11521 ggatgccgtc tgaagcgaca ggcgtttcag acggcatcgt gtccgaccgt cagccgtgtt
    11581 cccgtgtttc aagcaggctt tggcgcaggt gttggcgttc gtgggcatcc agccatttgc
    11641 ggcgggtgcg ttgcagcagg atgacgaggg cggaaatttc ctgacgcata ttggtgctga
    11701 gccagaggaa gccctgccat tggtagtgga ggtgttcggc gagggcttcc agttcggggt
    11761 tgatggcggt gtcgatgcgg atgcggcggg cgtgtctgcc gttgataagg gcgacggttt
    11821 gttgcaggtc ggtttggagc agtgtgaagt ggcggtcgag cagccggatt tcgctgccgt
    11881 tgagtttggg agattgcagc ttggcggcag tggtcaggag cagctcggtg gtgttgacaa
    11941 ttttacggtg ggcgtgctgc atggcttcca tcatggcggg gctgatgcgg ctttcgcccg
    12001 atgtggcggc gaggtggctg cggcttttga ccatgcgtgc gttgatttgg cgcattttaa
    12061 ccatattctg ctccaaacgt tcgcgcgtca tacgcctgcc gttgctgatt tcggcaatca
    12121 ttttgctgca gtcggtcagg ttgtcggcaa gcatgaaacg ccacatcagt gtggatttca
    12181 gcggcagcag tttggcggcg gcgatggcga tggccgcgcc gatgaggacg ttcatcgcgc
    12241 gcatcaggcc gctgtcgaac cattcgctgc cgttgtcgcc gatgagcatg cacatcgtca
    12301 gccccgccag catagggacg tagccgtttt tgccgaccgc cgcccagccg gccagtgcgc
    12361 ttgccgtgcc gacggtgagg tagaagagga ggttgccgtg gaaataatgc tggttcagcc
    12421 ataaaacgcc caaacccgcg cccagcccga tgaccgtgcc gagcatacgt tccaccgcct
    12481 tggagtaaat cgccccttga aactggagca tgccgaggac gacgaagacg gtcatcccta
    12541 tccactcgcc gtgttggagg tggagcagcc gggcggaggc ggtggcgaac aggacggccc
    12601 cgccgagccg gacggcgtgg atgaggcggc ggtagcggta gcgttcgtag gagttgagcc
    12661 agcggctgac gaggcggttg cgttgcgagg tgttcatatc ggttgtgccg tctgaagcgg
    12721 aaatgtgaaa aagcacaggc ttcccgagga agggagggtc tgtgcttggt attggtgccg
    12781 gagaagggaa tcgaaccccc gaccttcgcg ttacgaatgc gctgctctac cgactgagct
    12841 acaccggcgt tttttcgtca tgatatatat gaacggttgt ttgtgcaact tttcgggcgg
    12901 gcggcaaggc agtgcgcg
//
LOCUS       DAWGNT010000042        12786 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.042, whole genome shotgun sequence.
ACCESSION   DAWGNT010000042 DAWGNT010000000
VERSION     DAWGNT010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12786
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.042"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..1190)
                     /locus_tag="WHR98_000860"
     CDS             complement(<1..1190)
                     /locus_tag="WHR98_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase-like protein"
                     /protein_id="HEZ2307560.1"
                     /translation="MSTFPNHTMHTISFPNRTRLTALPPLSLYIHIPWCIKKCPYCDF
                     NSHSLKNGLPEAAYIDALLTDLQLELPNIWGRPVETIFFGGGTPSLFQAESIDRLLSG
                     VRSLLRLQPEAEITLEANPGTFEIEKFQGFKDAGITRLSIGVQSFNDDMLSRLGRVHN
                     GKEALTAIDTALKLFDKVNIDLMYALPNQTVQTALDDVQTAIATGATHISAYHLTMEP
                     NTPFGHTPPKGLPQDEAALDIEDAVHGALESAGFVHYETSAFAKPAMQCRHNLNYWQF
                     GDYLGIGAGAHGKISYPDRIERTVRRRHPNDYLALMQNRPSEAVERKTVAAEDLPFEF
                     MMNALRLTDGVPAAMLQERTGVPSAKIMAQIETARQKGLLETDPAVFRPTEKGRLFLN
                     DLLQ"
     gene            complement(1223..3748)
                     /gene="ligA"
                     /locus_tag="WHR98_000861"
     CDS             complement(1223..3748)
                     /gene="ligA"
                     /locus_tag="WHR98_000861"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEZ2307561.1"
                     /translation="MNPNSKHNTNFTNLLKPSDSDIKQFAAQHIRHLTDLLNRYAYEY
                     YTLDAPSVPDAEYDKLFRELEALERNHPELKLPDSPTQRVGGEPLAGFAEVRHEVPML
                     SLTNAFSPQDENGVFDHAEMYAFDQRVRDGLDGGNPEYVIEPKFDGLAISLLYRDGVL
                     IQAATRGDGTTGEDVTQNIKTVSNIPLRLHGENTPELIEVRGEVLMQKADFAALNKRQ
                     AENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSVARQQGGFVAEEHIQELAYF
                     QALGFSLPNGNFGCFKNIDEVLAFYEHMQQKRPELPYEIDGMVVKVNSLAQQRELGFI
                     SRAPRWAIAHKFPAEEALTVVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNATLHNQ
                     DEISRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETAVAVSDGIGHRQDDLFAET
                     PSANQTQSIPLHKPYRLPTHCPICRSEIEREEGEAVARCSGGMLCQAQRAQGLIHFAS
                     RKAMDIDGLGEKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETTDKTVAESDQTPSEG
                     SSVGASGKHKKQPVKWAENILGGIESGKTPELARFLFALGIRHVGERTAKTLAQAFGT
                     LERVRRAPEPVLACLPDIGTVVAHSIAHFFAQAEQQAMIDELLAAGVAPQTQAVTIPP
                     ARHAEPQRWIARLPDFKISENKAQALWELAGKNIEGLQNDKALPADWQAWRSEPQNAA
                     LLENLKTFFAQMPSEDEAAQGSDGINKAVAGKTFVLTGTLPTLKRDQAQSLIEAAGGK
                     VSGSVSKKTDYVVAGEAAGSKLEKANALGVSVLSEAELLTLLG"
     gene            complement(3896..5182)
                     /locus_tag="WHR98_000862"
     CDS             complement(3896..5182)
                     /locus_tag="WHR98_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HEZ2307562.1"
                     /translation="MIYIVLFLAAVLAVVAYNMYQENQYRKKVRDQFGHSDKDALLNS
                     KTSHVRDGKPSGGSVMMPKPQPAVKKTAKLQDPAMRNLQEQDAVYIAKQKQAKASPFK
                     TEIETALEESGIIGNSAHTVSEPQTGHSAPKPADAPAKPAPVPQTPAKPLITLKELSK
                     VELPWFDVRFDFISYIALTEAKELHALPRLSNRCRYQIVGCTMDDHFQIAEPIPGIRY
                     QAFIVGIQAVSRNGLASQEELSAFNRQVDAFAQSMGGQTLHTDLAAFIEVASALDAFC
                     ARVDQTIAIHLVSPTSISGVELRSAVTGVGFVLEDDGAFHYTDTSGSTMFSICSLNNE
                     PFTNALLDNQSYKGFSMLLDIPHSPAGEKTFDDLFMDLAVRLSGQLNLNLVNDKMEEV
                     STQWLKDVRTYVLARQSEMLKVGIEPGGKTALRLFS"
     gene            complement(5376..5948)
                     /gene="ampD"
                     /locus_tag="WHR98_000863"
     CDS             complement(5376..5948)
                     /gene="ampD"
                     /locus_tag="WHR98_000863"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HEZ2307563.1"
                     /translation="MDNHAEAHWQNGWLQSIRHTPSPNFSPRETGETVSLIVLHNISL
                     PPFEYGTDAVEKLFANRLDPDGHPFFSLIHTLRVSSHFLIKRDGETVQFVSCDNMAYH
                     AGVSSFRGREKCNAFSIGIELEGCDFEPFTEAQYRSLEALLDAICRRYHITAVTGHQD
                     IAPGRKTDPGHFFDWRRIRGKGFPVDRNAV"
     gene            6032..7027
                     /gene="mltG"
                     /locus_tag="WHR98_000864"
     CDS             6032..7027
                     /gene="mltG"
                     /locus_tag="WHR98_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEZ2307564.1"
                     /translation="MLRKLLKWSAVFLTVSAAVFAALLFVPKDNGRAYRIKIAKNQGI
                     SSVGRKLAEDRIVFSRHVLTAAAYVLGVHNRLHTGTYRLPSEVSAWDILQKMRGGRPD
                     SVTVQIIEGSRFSHMRKVIDATPDIGHDTKGWSNEKLMAEVAPDAFSGNPEGQFFPDS
                     YEVDAGSSDLQIYQTAYKAMQRRLNEAWESRQDGLPYKNPYEMLIMASLIEKETGHEA
                     DRDHVASVFVNRLKIGMRLQTDPSVIYGMGAAYKGKIRKADLRRDTPYNTYTRGGLPP
                     TPIALPGKAALDAAAHPSGEKYLYFVSKMDGTGLSQFSHDLTEHNAAVRKYILKK"
     gene            7087..7707
                     /locus_tag="WHR98_000865"
     CDS             7087..7707
                     /locus_tag="WHR98_000865"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEZ2307565.1"
                     /translation="MKPQFITLDGIDGAGKSTNLAVIKAWFERRGLPVLFTREPGGTP
                     VGEALREILLNPETKAGLRAETLMMFAARMQHIEDVILPALSDGIHVVSDRFTDATFA
                     YQGGGRGMPSEDIEILEHWVQGGLRPDLTLLLDVPLEVSMARIGQSREKDRFEQEQAD
                     FFMRVRSVYLNRAAACPERYAIIDSNRSLDEVRNNIEKVLDGHFGC"
     gene            7929..9209
                     /locus_tag="WHR98_000866"
     CDS             7929..9209
                     /locus_tag="WHR98_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme"
                     /protein_id="HEZ2307566.1"
                     /translation="MENSLKEAALKFHELPVPGKISVTPTKSLATDKDLALAYSPGVA
                     APCMEIHADPQNAYKYTAKGNLVAVISNGTAVLGLGDIGALAGKPVMEGKGVLFKKFA
                     GVDVFDIEIDEKDPQKLVDIIAALEPTFGGINLEDIKAPECFYIERELRKRCKIPVFH
                     DDQHGTAIITAAAVLNALRFTGRKIEEATLVCSGAGAAAIACLNQLLDLGLKRENVTV
                     CDSKGVIYQTREDKDRMDESKQFYAIEDNGQRVLADAVKGKDIFLGLSGANLLTPEML
                     NTMNEKPIVFAMANPNPEILPPLAKETRPDVVIGTGRSDFPNQVNNVLCFPFIFRGAL
                     DVGATTINEEMKRACVYALADLAMEEVTEEVVAAYGKKFEFGAEYLIPTPFDSRLLPR
                     VATAAAKAAMESGVATRPIADFEAYAAKLGEWKL"
     gene            9292..9563
                     /locus_tag="WHR98_000867"
                     /pseudo
     CDS             9292..9563
                     /locus_tag="WHR98_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713445.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            9603..10637
                     /locus_tag="WHR98_000868"
     CDS             9603..10637
                     /locus_tag="WHR98_000868"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_025462052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEZ2307567.1"
                     /translation="MPNCFKFHTVIERHWQKPYPVLSFLLKPLSGLFAKIAAKRRTDF
                     LSGKRQSEKLPVPVVVVGNIHAGGTGKTPIVAALVSGLQEKGVKVGIISRGYGRKSKA
                     VHVLNAASRAEDAGDEPLLLFRKTGAPTAVGSSRAEAGRALLAAHPDIGLIVADDGLQ
                     HYALRRDVEIAVFPSADTARQDLDLLPNGNLREPLSRLDSVDAVVVSGGKADVSFMPS
                     ENMFHSRIEAGRIYRLNNPSEILDTGRLKNQTVVAVAGIAKPARFFDSLRNMGITVKR
                     TVALPDHADISAADLPDADAVIITEKDAVKFSDGICTDNVWVLPVCAIIEPDLAAFVL
                     ERLEDVPKAV"
     gene            10843..11424
                     /locus_tag="WHR98_000869"
     CDS             10843..11424
                     /locus_tag="WHR98_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HEZ2307568.1"
                     /translation="MKLKTLLLPFATLALCTNAFAAPPSDASLARWLDTQNFDRDIEK
                     NMIEGFNAGFKPYADKALAEMPEAKKDQAAKAFNRYRENVLKDLITPEVKQAVRNTLL
                     KNAREIYTQEEIDGMIAFYGSPVGQSVVAKNPRLIKKSMSEIAVSWTALSGKIARHHL
                     PAFTEELRRIICGGKNPDAGCKQAGQVGKRHQK"
     gene            11493..11675
                     /locus_tag="WHR98_000870"
     CDS             11493..11675
                     /locus_tag="WHR98_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HEZ2307569.1"
                     /translation="MEKKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPY
                     MLENEARALSEEELKA"
     gene            11672..12433
                     /gene="kdsB"
                     /locus_tag="WHR98_000871"
     CDS             11672..12433
                     /gene="kdsB"
                     /locus_tag="WHR98_000871"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEZ2307570.1"
                     /translation="MTEFVVLIPARLDSSRLPGKALADIHGKPMVVRVAEQAAKSKAV
                     RVVVATDHPDIQTACQAHGVEVVMTSNRHESGTTRLAEASAALKLPPHLVVVNVQGDE
                     PLIAPELIDRTAEVLVENNVQMATAAHELHDFDELMNPNAVKVVLDKNRNAIYFSRAP
                     IPYPRDAMRAGKREMPFETAVLRHIGIYAYRVGFLQRYTEMSVSSLETIESLEQLRVL
                     WHGYSIAVETAKEAPAAGVDTQEDLDRVRAVFQTV"
     gene            12456..>12786
                     /locus_tag="WHR98_000872"
     CDS             12456..>12786
                     /locus_tag="WHR98_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEZ2307571.1"
                     /translation="MQQHIEKWQHLSREEQKILAEVWGLVQNDDQEVHYEMLKLNAPD
                     EASGEFWFRMAETLSTLPPNRSLDLRMNGGRLATAVSILSVMIEDNPDIPQLWAQKIT
                     ALNYSGLN"
BASE COUNT         2818 a         3207 c         3768 g         2993 t
ORIGIN      
        1 cattgcagca aatcgtttaa aaacaagcgt cctttttcgg tcgggcggaa tacggcgggg
       61 tcggtttcca gcaggccttt ttgccttgct gtttcgattt gcgccatgat tttggcactc
      121 ggtacgcccg tgcgttcctg caacatcgcg gcgggtacgc cgtcggtcag gcgcagggcg
      181 ttcatcatga actcaaacgg caaatcttcg gcggcgacgg ttttgcgttc gacggcttcg
      241 ctcggtcggt tttgcattaa ggcgaggtag tcgttggggt ggcggcggcg gacggtgcgc
      301 tcgatgcggt cgggatagga aattttgccg tgcgcgcccg cgcctatgcc taaataatcg
      361 ccgaactgcc agtagttcaa attgtggcgg cactgcatgg ctggtttcgc aaaagccgat
      421 gtttcgtagt ggacaaaacc cgcgctttcc agcgcgccgt gtaccgcgtc ttcgatgtcg
      481 agggcggctt cgtcttgcgg caaacctttc ggcggcgtat gaccgaacgg cgtgttcggt
      541 tccatcgtca gatgatacgc gctgatgtgg gtcgcgcccg tagcgatagc ggtttgtacg
      601 tcgtccaatg ccgtctgaac ggtttggttc ggcagggcat acatcaagtc gatattgact
      661 ttatcaaata atttcaaggc ggtatcgata gcggttaagg cttccttgcc gttgtggacg
      721 cgccccagcc ttgagagcat atcgtcgttg aaactctgta caccaataga aagccgcgtg
      781 atgcctgcgt ctttaaatcc ttgaaacttc tcgatttcaa atgtccccgg attggcttcc
      841 aaggtaattt ccgcttccgg ctgcaagcgc aacagcgaac gcacgccgct caataaacgg
      901 tcaatcgatt ccgcctgaaa caggctgggc gtaccgccgc cgaaaaagat cgtttccacc
      961 ggcctgcccc aaatattggg caattcgagc tgcaagtcgg tcagcagcgc gtcgatatag
     1021 gcggcttcgg gcaatccgtt tttcaggctg tgggaattaa agtcgcaata cgggcatttt
     1081 ttgatgcacc acgggatgtg gatgtaaagc gacaggggcg gcagggcggt gagtcgggtg
     1141 cggtttggaa aggaaatggt gtgcatggtg tggttcggaa aagtggacaa tgccgtctga
     1201 aggcggttca gacggcatag gttcagccga gcagggtaag cagttcggct tcgctgagga
     1261 cggaaacgcc caaggcattg gctttttcca gcttgctgcc cgcggcttct ccggcgacga
     1321 cgtagtcggt ttttttggac acgctgccgg aaactttgcc gcctgcggct tcgattaggg
     1381 attgggcttg gtcgcgtttg agcgtgggca gggtgccggt taatacaaag gttttgcctg
     1441 ctacggcttt attgatgccg tctgaacctt gcgccgcctc gtcttcagac ggcatttgcg
     1501 cgaagaaggt tttcaggttt tcgagtaggg cggcgttttg tggttcgctg cgccatgctt
     1561 gccagtcggc ggggagggct ttgtcgtttt gtagaccttc tatgttttta ccagcgagtt
     1621 cccataaggc ttgggctttg ttttcgctaa ttttgaagtc gggcaggcgg gcgatccagc
     1681 gttgcggttc ggcgtggcgg gcgggcggga tggtaacggc ttgggtttgc ggggcaacgc
     1741 ctgcggcgag cagttcgtct atcatcgcct gctgttcggc ttgggcgaag aagtgggcaa
     1801 tggaatgcgc cactaccgta ccgatgtcgg gcaggcaggc gaggacgggt tcgggggcgc
     1861 ggcggacgcg ttccaatgtg ccgaatgcct gcgccagcgt tttggcggtg cgttcgccga
     1921 cgtggcggat gccgagcgcg aacaggaagc gcgcgagttc gggcgttttg ccggattcta
     1981 tgcccccgag gatgttttcc gcccacttga ccggttgttt tttatgtttg cccgacgcgc
     2041 cgaccgaact gccttcagac ggcgtttgat ccgattcggc aacggttttg tccgtcgttt
     2101 ctttcatttt ttgcagggtc ggaatatcga ggcggtagag gtcggcgaag tggcggacga
     2161 ggtcttgggc gacaagctgt tcgatttgtt tttcacccaa gccgtcgatg tccatggctt
     2221 tgcgcgaggc gaagtggatt aagccttgcg cgcgttgtgc ctgacaaagc ataccgccgc
     2281 tgcatcgggc gacggcttcg ccttcttcgc gttcgatttc gctgcggcag atggggcaat
     2341 gggtcggcag gcggtagggc ttgtggagcg gaatggattg ggtttgatta gcggacggtg
     2401 tttcggcaaa caaatcgtcc tgccgatgcc cgatgccgtc tgaaacagca acggcggttt
     2461 cctgcatcgg gcggcgttca aaaatcacac gcacgacttc gggaatcacg tctccggcgc
     2521 ggcgcacgac gacggtatcg ccgacgcgca cgtctttgcg cgatatttcg tcctgattgt
     2581 gcagggtggc gttggtaaca gttacgccac cgacgaatac gggctgtaat cgggcaaccg
     2641 gcgttaccgc gcccgtcctg ccgatttgca cgtcaatcgc ttcgacgacg gtcagggctt
     2701 cttcggcagg gaacttgtgg gcaatcgccc agcgcggcgc gcgggagatg aagccgagtt
     2761 cgcgttgttg cgccaagctg ttgactttga ccaccatgcc gtcgatttcg tagggcagtt
     2821 cggggcgttt ttgctgcatg tgttcgtaaa acgccaatac ttcgtcgata tttttgaaac
     2881 agccgaaatt gccattgggc agactgaagc cgagtgcttg gaaataggcg agttcctgga
     2941 tgtgttcttc cgcgacgaaa ccgccttgct ggcgggcaac ggagtagggg aaaaagtgca
     3001 gtttgcgctg cgcggtgatg cgcgaatcga gttggcgtag gctgccggcg gcggcgttgc
     3061 gcggattggc aaagggtttt tgcccgtttt cggcttgtct tttattgagg gcggcaaaat
     3121 cggctttttg catcagtact tcgccgcgta cttcgatgag ttcgggcgta ttttcgccgt
     3181 gcagccgcaa ggggatgttg gatacggttt tgatgttttg ggtaacgtct tcgcccgtcg
     3241 tgccgtcgcc gcgcgttgct gcttgaatca atacgccgtc gcgatagagc aggctgatgg
     3301 cgaggccgtc gaatttaggt tcgataacgt attcgggatt gccgccgtcc aaaccgtcgc
     3361 gcacgcgttg gtcgaaagcg tacatttcgg catggtcgaa cacgccgttt tcatcttgcg
     3421 gggaaaaagc gttggtcagc gacagcatcg gcacttcgtg gcgtacttcg gcaaatcccg
     3481 ctaaaggctc gccgccgacg cgctgggtcg gactgtcggg cagtttgagc tcgggatggt
     3541 ttcgttccaa cgcttcgagc tcgcggaata atttgtcgta ttcggcatcg ggtacgctgg
     3601 gcgcgtcgag ggtgtagtat tcgtaggcat agcggttgag caggtcggtg aggtggcgga
     3661 tgtgttgtgc ggcaaattgt tttatatcac tatcagacgg tttaagaaga ttggtaaagt
     3721 tagtgttatg ttttgagttt ggattcatga gagaaggttt tcagacgacc tttgtctgat
     3781 acgggatgaa acgggcaaag gtcgtctgaa aaatgatagg ttgaaaacag ctgaatttta
     3841 cccgaaaaaa agcggatatg ccgtaacgac atatccgctt tgattgcatt cgattttagg
     3901 agaacaggcg caatgcggtt ttgccgcccg gttcgatacc gactttgagc atctcggact
     3961 gacgcgccaa tacataagtg cgcacgtctt tgagccattg ggtcgaaact tcttccattt
     4021 tgtcgttgac cagattcagg ttcaactggc cggacaggcg taccgccaaa tccataaaca
     4081 aatcgtcgaa ggttttttcg cctgccggag agtgcgggat gtcgagcagc atactgaagc
     4141 ctttgtagga ctggttgtcc aaaagggcgt tggtaaacgg ctcgttgttg agcgagcaga
     4201 tggagaacat ggtcgagccc gacgtgtcgg tatagtggaa cgcgccgtcg tcttccaaaa
     4261 cgaaacccac gcccgttacg gcggaacgca gttctacgcc gctgatgctg gtcggggaaa
     4321 ccaaatggat ggcgatggtc tggtcgacgc gcgcgcagaa tgcgtccagt gcggaagcca
     4381 cttcgataaa ggcggcaagg tcggtgtgca gcgtctgacc gcccatgctt tgtgcgaatg
     4441 cgtccacctg gcggttgaat gcggagagtt cttcctgcga ggcaagtccg ttgcggctga
     4501 ctgcctgaat acccacgata aatgcctgat agcggatgcc cgggatgggt tcggcaatct
     4561 ggaaatggtc gtccatggtg cagccgacaa tctggtagcg gcagcggttg gaaaggcgcg
     4621 gcagtgcgtg cagttctttg gcttcggtca gcgcgatata ggagatgaag tcgaagcgca
     4681 cgtcaaacca cggcagttcg acttttgaca gttctttgag cgtaatcagc ggttttgcag
     4741 gtgtttgcgg aacgggtgca ggttttgccg gcgcgtcggc aggtttcggt gcggaatgtc
     4801 cggtttgggg ttcggaaacg gtgtgggcgg agttgccgat aatgccgctt tcttccaagg
     4861 cggtttcgat ttcggttttg aacggggagg cttttgcctg tttctgcttg gcgatgtaga
     4921 cggcatcctg ttcttgcagg ttgcgcatag cagggtcttg gagttttgcc gtttttttga
     4981 ccgccggttg gggtttcggc atcatgactg acccgccgga cggtttgccg tcgcggacat
     5041 ggctggtttt gctgttgagc agggcatctt tgtcggagtg cccgaactgg tcgcgcactt
     5101 ttttgcggta ttggttttcc tgatacatat tgtaggcgac aacggcgagg acggcggcga
     5161 ggaacagtac gatgtaaatc atggcaatca ctttaaattt cgggatgcag gatgcgcaaa
     5221 gtgcgggtac tgcggttaaa tcgggcttgc gtttccggca gtctgacgga acggccggtt
     5281 ataacgtttg aattataacg aaaattgcag ggtctgacag cagtgtgtcg aaataagcgg
     5341 aaattttccg aaatgccgtc tgaaatctgt ggttttcaga cggcatttct gtccacggga
     5401 aaccctttcc cccgtatccg ccgccagtcg aaaaaatggc cggggtcggt tttgcggccg
     5461 ggcgcgatgt cttggtgccc cgttaccgcc gtgatgtggt agcggcggca gattgcgtcc
     5521 aacaaggctt cgagcgaacg gtattgcgct tcggtaaagg gttcgaaatc gcagccttcc
     5581 aattcgatgc cgatggaaaa tgcgttgcat ttttcccgtc cgcgaaacga ggatacgccg
     5641 gcatggtatg ccatattgtc gcaggaaacg aactgtaccg tttctccgtc gcgtttgatt
     5701 aagaaatggc tggatacgcg caaagtgtgt atcaggctga agaacggatg tccgtcgggg
     5761 tcgagccggt tggcaaacag cttttccacc gcatccgtgc cgtattcgaa cggcggcagc
     5821 gaaatgttgt gcaacacaat cagggaaacc gtttcccccg tttccctcgg gctgaaattg
     5881 ggtgacgggg tatggcgtat gctttgaagc cagccgtttt gccagtgtgc ttcggcgtga
     5941 ttgtccatga tgttcttcct gtccggcggg caatttgggt tatactgtcg cccgaatttt
     6001 aagacgtatt ccgaatgctg ggaatcctac catgttgaga aaattgttga aatggtctgc
     6061 cgtttttttg accgtatcgg cagccgtttt cgccgcgctg cttttcgtcc ctaaagacaa
     6121 cggcagggca taccgaatta aaattgccaa aaaccagggt atttcgtcgg tcggcaggaa
     6181 acttgccgaa gaccgcatcg tgttcagcag gcatgttttg acggcggcgg cctacgtttt
     6241 gggtgtgcac aacaggctgc atacggggac gtacagattg ccttcggaag tgtctgcttg
     6301 ggatatcttg cagaaaatgc gcggcggcag gccggattcc gttaccgtgc agattatcga
     6361 aggttcgcgt ttttcgcata tgaggaaagt catcgacgca acgcccgaca tcggacacga
     6421 caccaaaggc tggagcaatg aaaaactgat ggcggaagtt gcccctgatg ccttcagcgg
     6481 caatcctgaa gggcagtttt tccccgacag ctacgaagtt gacgcgggta gcagcgattt
     6541 gcagatttac caaaccgcct acaaggcgat gcaacgccgt ctgaacgagg catgggaaag
     6601 caggcaggac gggctgcctt ataaaaaccc ttatgaaatg ctgattatgg cgagccttat
     6661 cgaaaaggaa acggggcatg aagccgaccg cgaccatgtc gcttccgtct tcgtcaaccg
     6721 gctgaaaatc ggtatgcgcc tgcaaaccga cccgtccgtg atttacggca tgggtgcggc
     6781 atacaagggc aaaatccgta aagccgacct gcgccgcgac acgccgtaca acacctacac
     6841 gcgcggcggt ctgccgccaa ccccgattgc gctgcccggc aaggcggcac tcgatgccgc
     6901 cgcccatccg tccggtgaaa aataccttta ttttgtttct aaaatggacg gtacgggctt
     6961 gagccagttc agccatgatt tgaccgaaca caacgccgcc gtccgcaaat atattttgaa
     7021 aaaataaacc atgccgtctg aaaagtttgt gttttcagac ggcataccct taccggaact
     7081 gcaagcatga aaccgcaatt catcactttg gacggcatag acggtgccgg aaaatccacc
     7141 aaccttgccg tcatcaaggc atggtttgaa cggagggggc tgcccgtgct gttcacgcgc
     7201 gagccgggcg gaacgccggt cggtgaggcc ttgcgcgaaa tcctgctcaa ccctgaaacc
     7261 aaagccggtt tgcgtgcgga aacactgatg atgtttgccg ccagaatgca gcatattgaa
     7321 gacgtgatat tgcctgcact ttcagacggc atccatgtcg tgtccgaccg ttttaccgac
     7381 gcaaccttcg cctatcaggg cggcgggcgg gggatgccgt ctgaagacat tgaaattttg
     7441 gaacattggg tgcagggcgg tttgcgcccc gatttgaccc tgctgttgga tgtgccgctg
     7501 gaagtgtcga tggcgcgtat cggacagtcg cgcgagaaag accggttcga gcaggaacag
     7561 gcagatttct tcatgcgtgt gcgcagcgtt tatctgaacc gtgccgccgc ctgtcccgaa
     7621 cggtacgcca ttatcgacag taaccgcagc ttggatgaag tcagaaacaa catagaaaaa
     7681 gtgttggacg gacatttcgg ctgttaatgc ggcaaatatt gaaacaagcg catccacccg
     7741 cgccgaaaat caaacggcag tgccgcaggt gaaaatggcg gtatgcgcca aactttcggc
     7801 atgatagaat tacgctcggt tacaaggcag gatgcgtcgg caatattaac gaaccgcccg
     7861 taacatgatg acccgaaagc gtttcggaca gtccgattca aatctttttc tcgcaacagg
     7921 attgacacat ggaaaactca ttgaaagaag ccgccctcaa gttccacgaa ttacccgttc
     7981 cgggcaaaat ttccgttacc ccgaccaaat ctttggcgac cgacaaagat ttggcgttgg
     8041 cgtactctcc gggcgtagcc gctccttgta tggaaatcca tgccgatccg caaaatgcct
     8101 acaaatacac cgccaaaggc aacttggtcg ccgtcatttc caacggtacg gccgttttgg
     8161 gcttgggcga catcggcgcg ctggcgggca aacccgtgat ggaaggtaaa ggcgtattgt
     8221 tcaaaaaatt cgccggtgtg gacgtgttcg acatcgaaat cgatgaaaaa gacccgcaaa
     8281 aactcgtgga catcatcgcc gctttagagc cgaccttcgg cggcatcaac ctcgaagaca
     8341 tcaaagcacc cgagtgtttc tacatcgaac gcgaattacg caaacgctgc aaaatccccg
     8401 tattccacga cgaccagcac ggcacggcca tcattaccgc cgccgccgta ttgaatgccc
     8461 tgcgttttac cggccgtaaa atcgaagaag cgactttggt gtgttccggc gcaggtgcgg
     8521 ccgcgattgc ctgcttgaac caattgctgg atttgggctt gaaacgcgaa aacgtgaccg
     8581 tttgcgactc caaaggcgtg atttaccaaa cccgcgaaga caaagaccgc atggatgagt
     8641 ctaaacagtt ctacgccatt gaagacaacg gccagcgcgt gcttgccgat gccgtcaaag
     8701 gcaaagacat cttcttgggc ctctccggcg cgaacctgct gacgcctgaa atgctgaaca
     8761 ccatgaacga aaaacccatc gtgttcgcca tggccaaccc gaatccggaa attctgccgc
     8821 cgctggcaaa agaaacccgt ccggacgtgg ttatcggtac cggccgttcc gacttcccga
     8881 accaagtcaa caatgtattg tgcttcccgt tcatcttccg tggcgcgttg gatgtcggcg
     8941 cgaccaccat caacgaagaa atgaaacgcg cctgcgtgta tgctttggcg gatttggcga
     9001 tggaagaagt gaccgaagaa gtggttgccg cttacggtaa gaaatttgaa ttcggcgcgg
     9061 aatacctgat tccgactccg ttcgattccc gcctgctgcc gcgcgtcgct acggctgccg
     9121 ccaaagcagc gatggaaagc ggcgttgcaa cccgtccgat tgccgacttt gaagcctacg
     9181 ccgccaagct gggcgaatgg aagctgtaag ccgtttgcgg tttaaaatgc cgtctgaact
     9241 gttttcaggc ggcattttgc tgtcagattg ataaatgaaa gatactggaa aatgaaagag
     9301 atgaaacctg tccgttatca tattggcgat atgcccgaga cttcaaaaca aaccgcctcc
     9361 cgtcatgacg acagggcagt gggtgttgac gatgattgtt ttcatgcttc ctttggtcaa
     9421 tttttgtttg ggtgttcggc agaggcaacc cgaaccacgc caatttctgt aaagcgcagt
     9481 tgcttattta cctgattggt tcgcttatcg gtttggtctt cgcgttgttt ataggtgggt
     9541 ctgtatcggg tacgcatgat taatgccccg ggctgatttt gcctcgagga tttgtatcga
     9601 atatgccgaa ttgtttcaaa tttcataccg ttatcgaacg gcattggcaa aaaccttatc
     9661 cggttttgtc ttttctgctt aagccgctct ccgggctgtt tgccaaaatt gcggcaaaac
     9721 ggcggacgga ttttttatcg ggaaaacggc aaagcgaaaa gctgcccgtg cctgtggtcg
     9781 tggtcggcaa catccatgcc ggcggtacag gaaaaacgcc gattgttgcc gcgctggtgt
     9841 cgggtttgca ggaaaaaggt gtcaaggtcg gcatcatcag ccggggctac gggcgcaaga
     9901 gcaaggcggt tcatgtattg aatgccgcaa gccgagcgga agatgcgggc gacgagcctt
     9961 tgctgctgtt ccgcaaaacc ggcgcgccga cggctgtggg cagcagccgt gcagaggcag
    10021 gcagggcgtt gctggcggcg catcccgaca tcggactgat tgtggcggac gacggtttgc
    10081 agcattacgc cctgcggcga gatgtggaaa tcgcggtgtt tccgtctgcc gacacagcaa
    10141 ggcaagattt ggatttgctg cccaacggca atttgcgcga acctttgtcg cggctggatt
    10201 cggtggatgc ggtcgtcgtc agcggcggca aggcggatgt gtcgtttatg ccgtctgaaa
    10261 atatgtttca cagccgtatc gaagcgggac ggatttaccg tttgaacaat ccgtccgaaa
    10321 tactggacac aggccgtctg aaaaatcaaa ccgtcgtcgc cgtggcaggt attgccaagc
    10381 cggcgcgttt tttcgattcg ttgcggaata tgggcattac cgtgaagcga accgtcgcgc
    10441 tgcctgacca cgccgacatt tcggcggcag atttgcccga tgcggacgcg gtcattatta
    10501 cggagaaaga tgcggtcaaa ttttcagacg gcatttgcac cgataatgtt tgggtgttgc
    10561 ccgtttgtgc gataatcgaa cctgatttgg cggcgtttgt gttggagcgg ttggaagatg
    10621 taccgaaggc cgtctgaaag cacggtttgg gcggagtgat tacggatttg aataagaacg
    10681 cctcgcgccg tcattcccgc gcaggcggga atctaagtct cgaattttca ggaatgccta
    10741 ggaggcttca gaaatcccaa atctccggat ttccacttgg acaggaatga gaaaaccggt
    10801 cgtatttttt atctgcatta atcatttgtt aaaggattga atattaaatt gaaaaccttg
    10861 ttattgccct tcgccacgct ggcattgtgc accaacgctt ttgccgcccc gcccagcgac
    10921 gcgtcgttgg cgcgttggct ggatacgcag aattttgacc gggatataga aaaaaatatg
    10981 attgagggct ttaatgccgg atttaaaccg tatgcggaca aagcccttgc cgaaatgccg
    11041 gaagcgaaaa aagatcaggc ggcaaaagcc tttaaccgct atcgtgagaa tgttttgaaa
    11101 gatttgatta cgcccgaagt gaaacaggct gtccgcaata ctttattgaa gaatgcccgt
    11161 gagatataca cgcaagaaga aattgacggc atgattgcct tttacggttc gcctgtcggt
    11221 cagtccgtcg ttgccaaaaa tccgcgctta atcaagaaat cgatgagtga aatagcagta
    11281 tcttggactg cattgtcagg gaaaatcgcg cgacatcatc tgcccgcgtt tacggaagag
    11341 ttgcggcgca tcatctgcgg cggtaaaaat cccgatgcgg gctgtaaaca agccggacag
    11401 gttgggaaaa ggcatcagaa ataaatgata gccgtctgaa atattgaaga gggcatccga
    11461 ttgattgaac catcaaaccc gaaagcaacc ctatggaaaa aaaattctta gacatcctcg
    11521 tctgccccgt taccaaaggc aggctggaat atcatcagga caaacaggaa ttgtggagcc
    11581 gtcaggcgaa gcttgcctat ccgattaaag acggcattcc ctatatgctg gaaaacgaag
    11641 cgcgagcgtt gagcgaagag gaactcaaag catgactgaa ttcgtcgtat tgattccggc
    11701 gcggctggat tcatcgcgcc tgcccggaaa agccttggcg gatatccacg gtaaaccgat
    11761 ggtcgtgcgc gttgccgaac aggcggcaaa aagtaaagcc gtgcgcgtcg tcgttgccac
    11821 cgaccatccc gatattcaga cggcctgtca ggcgcacggc gtcgaagtcg tcatgacttc
    11881 aaaccggcac gaaagcggca cgacgcgcct tgccgaagcc tctgccgcgc tgaagctgcc
    11941 gccgcatctg gtggttgtca acgtacaggg cgacgagccg ctgattgccc ccgaactcat
    12001 cgaccgcact gccgaagtct tggtggaaaa caacgtacag atggcaactg cggcacacga
    12061 attgcacgat ttcgacgaat tgatgaatcc caatgccgtc aaagtcgtcc tcgacaaaaa
    12121 ccgcaacgcc atctacttca gccgcgcccc gattccctat ccgcgcgatg cgatgcgtgc
    12181 aggaaaacgc gaaatgccgt ttgaaaccgc cgtcctgcgc catatcggca tctacgccta
    12241 ccgcgtcggc ttcctgcaac gctacaccga aatgagcgtt tcgtcgctgg aaaccattga
    12301 atcgctggag caactgcgcg tcctgtggca cggctactcg attgccgtcg aaaccgccaa
    12361 agaagccccc gccgccggtg tggatacgca ggaagatttg gacagggtcc gcgccgtatt
    12421 tcagaccgta taaaacaggt tcaaagggaa aagatatgca gcaacatatt gaaaagtggc
    12481 agcacttaag ccgtgaagaa cagaaaatcc ttgccgaagt atggggtctc gtgcaaaacg
    12541 atgatcagga ggttcactat gaaatgctta aattgaacgc acccgacgaa gccagcggcg
    12601 aattttggtt cagaatggca gaaacactca gcaccctgcc gcccaaccgt tccctcgacc
    12661 ttagaatgaa cggcggcagg ctggcgaccg ccgtatccat cctttccgtc atgattgaag
    12721 acaatcccga cataccgcag ctttgggcgc aaaaaattac cgcgctcaat tatagtggat
    12781 taaatt
//
LOCUS       DAWGNT010000043        12248 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.043, whole genome shotgun sequence.
ACCESSION   DAWGNT010000043 DAWGNT010000000
VERSION     DAWGNT010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12248
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.043"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            254..991
                     /locus_tag="WHR98_000873"
     CDS             254..991
                     /locus_tag="WHR98_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEZ2307572.1"
                     /translation="MIILDKVSKHYQTRDKTRFAAVEPTSLEIRDGEIFGLMGYSGAG
                     KSTLLRLINLLERPDSGKVNVCGQELTALDAAALRQARQNIGMVFQQFNLLNNRTVAG
                     NVAFPLEIAGWPSEKIKARVAECLEIVGLTERAGHYPAQLSGGQKQRVGIARALASKP
                     QVILADEPTSALDPATTRSVLECLEDINKRFNVTIVIVTHEMSVIRRLCDRAALLDKG
                     KVVEIVEVRGNQIHARSDIGRELIRED"
     gene            993..1679
                     /locus_tag="WHR98_000874"
     CDS             993..1679
                     /locus_tag="WHR98_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEZ2307573.1"
                     /translation="MADLTFQQAVSNIIGMKGEIVRALGETFVMVGLSTTFAVVFGTL
                     LGVLLFVTSSRQLHYNKPVNFLLDNLVNLMRAFPFVILMIAMIPATRTIVGSTIGPVA
                     ASLVLSVSGLFYFARLVEQNLREVPKGVIEAAAAMGAPPIAIVCKVLLNEARAGMVSS
                     ITVLAIGLLSYSAAAGMIGGGGLGDLAIRYGYYRYQTEVIVFIVALLVLLVILIQSTG
                     NTLARKLDKR"
     gene            1838..2701
                     /locus_tag="WHR98_000875"
     CDS             1838..2701
                     /locus_tag="WHR98_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307574.1"
                     /translation="MKTFFKTLSAAALALILTACGGQKDSAPAASASAAADNGAAKKE
                     IVFGTTVGDFGDMVKEHIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKP
                     YLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVM
                     LDELGWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPRSRADVDFAVVNGNYAI
                     SSGMKLTEALFQEPSFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYAHKRFEGYK
                     SPAAWNEGAAK"
     gene            complement(2763..3332)
                     /locus_tag="WHR98_000876"
     CDS             complement(2763..3332)
                     /locus_tag="WHR98_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEZ2307575.1"
                     /translation="MVRRLIIGISGASGFQYGVKALELLRAQDIETHLVVSKGAEMAR
                     ASETAYARDEVYALADFVHPIGNIGACIASGTFKTDGMLVAPCSMRTLASVAHGFGDN
                     LLTRAADVVLKERRRLVLMVRETPLNLAHLDNMKRVTEMGGVVFPPVPAMYRKPQTAD
                     DIVAHSVAHALSLFGIDTPDSAEWQGMAD"
     gene            3490..4350
                     /locus_tag="WHR98_000877"
     CDS             3490..4350
                     /locus_tag="WHR98_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEZ2307576.1"
                     /translation="MAKVKGGLGRGLDSLLANGADNSSGDRLTTVAVKDIRPGRYQAR
                     VQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGERRWRAAQIAGLTEIPAVI
                     KTISDETALAMGLIENLQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISN
                     SLRLLSLPEPVQEMLYQRRLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQ
                     AALQNKRPEPKKTAAADIGRLNDLLTEKLGVNAEIKTANHKKGRIILHFDTPETFDHI
                     LKQLGIDYRP"
     gene            4485..4823
                     /locus_tag="WHR98_000878"
     CDS             4485..4823
                     /locus_tag="WHR98_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307577.1"
                     /translation="MNTRIIVSAAFVALALAGCGSINNVTVSDQKLQERAAFALGVSP
                     NAVKISNRSNEGIRINFTATVGKRVSQCYVTSVISTIGVTTSDAICLGGGTHKGKSQC
                     NALLKAAGRC"
     gene            5191..5544
                     /locus_tag="WHR98_000879"
     CDS             5191..5544
                     /locus_tag="WHR98_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HEZ2307578.1"
                     /translation="MKQIIILQSAVLSICAAVAFAVWGFAGFLSAVGGGLSYLLPTFV
                     AVLLLKLFRGNPFLQSRMFVFGEILKVVLSLLSMLAVFAVWHQSLVFAPFLMGLLGVS
                     HLVFLVLLRVKDYGR"
     gene            5534..6400
                     /gene="atpB"
                     /locus_tag="WHR98_000880"
     CDS             5534..6400
                     /gene="atpB"
                     /locus_tag="WHR98_000880"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEZ2307579.1"
                     /translation="MAGETITAADYIKHHLQSLTSLSDVTQGQGLKNIADFSFINLDA
                     VFFAVLLGVIGSFLLWRGAKKATAGVPRRFQAAVEILFEFVDDMCKSIIHNEKSRKAV
                     APLGLTLFVWIFLMNAMDMLPVDLLPMVWQGITGNHHALLRVVPTADLNTTLALAVGV
                     LLICIYYNIKIKGLGGWFHELFSAPFGAKLAPANFLLNLVEFLSKTVSHGMRLFGNMY
                     AGELVFLLIALLGGAWAASGSVEVMDPILFVFHIIAGLAWAIFHILVITLQAFIFMAL
                     AFVYIGQAHDAH"
     gene            6457..6693
                     /gene="atpE"
                     /locus_tag="WHR98_000881"
     CDS             6457..6693
                     /gene="atpE"
                     /locus_tag="WHR98_000881"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEZ2307580.1"
                     /translation="MGLIAIACGLIVALGALGASIGIAMVGSKYLESSARQPELIGPL
                     QTKLFLIAGLIDAAFLIGVAIALLFAFVNPFAGA"
     gene            6764..7234
                     /locus_tag="WHR98_000882"
     CDS             6764..7234
                     /locus_tag="WHR98_000882"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEZ2307581.1"
                     /translation="MNINATLFAQIIVFFGLVWFTMKFVWPPIAKALDERAAKVAEGL
                     AAAERGKSDFEQAEKKVAELLAEGRNQVSEMVANAEKRAAKIVEEAKEQASSEAARIA
                     AQAKADVEQELFRARESLREQVAVLAVKGAESILRSEVDASKHAKLLDTLKQEL"
     gene            7239..7772
                     /locus_tag="WHR98_000883"
     CDS             7239..7772
                     /locus_tag="WHR98_000883"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEZ2307582.1"
                     /translation="MAEFATIARPYAKALFGLAQEKNQIESWLGGLEKLAAVVQEGKM
                     ASLIDRPETNASEKADILIDLVGLKDKELKNFVIVLAGQKRLSILPEVYAQYQDLTLS
                     FNHIKSAVIYSAYPLTDKQVGELAQMLNKRFDSELKISVEIEPELIGGIKVEVGDQVL
                     DLSVQGKLSALYTTMTN"
     gene            7783..9330
                     /locus_tag="WHR98_000884"
     CDS             7783..9330
                     /locus_tag="WHR98_000884"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEZ2307583.1"
                     /translation="MQLNPAEISDLIKAKIENLSVNAEVRTRGTVISVTDGIVRIHGL
                     SDAMQGEMLEFPGNTFGLAMNLERDSVGAVVLGEYEHIKEGDTVTCTGRILEVPVGRE
                     LVGRVVDALGRPIDGKGPINTTLTAPIEKIAPGVIARKSVDQPMQTGLKAIDSMVPVG
                     RGQRELIIGDRQTGKTAVALDAIVNQKGTGVICIYVAIGQKASSIANVVRKLEEHGAM
                     EHTIVVAATASEAAALQYIAPYSGCTMGEFFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAYPGDVFYLHSRLLERAARVNEHEVEKLTNGEVKGKTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETDLFNAGIRPAINAGISVSRVGGAAQTKVIKKLGGG
                     IRLALAQYRELAAFSQFASDLDEATRKQLEHGEVVTELMKQKQFSTLNTAEMALTLWA
                     INNGSYSDVPVAKALAFESEFLSFVRTQHPEVLEAVNASGAMSDESEKTLEAAMKSFK
                     SSYAYQA"
     gene            9355..10230
                     /gene="atpG"
                     /locus_tag="WHR98_000885"
     CDS             9355..10230
                     /gene="atpG"
                     /locus_tag="WHR98_000885"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEZ2307584.1"
                     /translation="MAVGKEILTKIRSVQNTQKITKAMQMVSTSKMRKTQERMRLARP
                     YAEKVRMVMSHLAQTNTDHGIPLLESHREIRRVGFILITSDKGLCGGLNANVLKKFLA
                     QVQEYRNQGIEEEIVCLGSKGLMACQSIGLNVVASAVNLGDTPKMEMLLGPLTELFQR
                     YEKHEIDRIHLVYSGFVNTMRQEPRMEVLLPIGENVIGDSAPKSPFSWEYRYEPTALA
                     VLEYLVRRYLESVVYQALSDNMASEQAARMVAMKAATDNAGNAIKELRLVYNKSRQAA
                     ITTELSEIVAGAAAV"
     gene            10268..11665
                     /gene="atpD"
                     /locus_tag="WHR98_000886"
     CDS             10268..11665
                     /gene="atpD"
                     /locus_tag="WHR98_000886"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEZ2307585.1"
                     /translation="MSQGKIVQIIGAVVDVEFPRDMIPRVYDALKLDENGLTLEVQQL
                     LGDGVVRTIAMGSSDGLKRGMTVNNTGAPITVPVGKGTLGRIVDVLGTPVDEAGPIDT
                     DKSRAIHQAAPKFDELSSTTELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
                     LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRV
                     ALTGLTMAEYFRDEKDENGKGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTL
                     AEEMGRLQERITSTQTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLG
                     IYPAVDPLDSTSRQLDPMVLGQEHYDVARGVQSTLQKYKELRDIIAILGMDELSDEDK
                     LTVMRARKIQRFLSQPFHVAEVFTGSPGKYVALRDTIAGFKAILNGEYDHLPEQAFYM
                     VGSIEEAVEKAKTLN"
     gene            11676..12098
                     /locus_tag="WHR98_000887"
     CDS             11676..12098
                     /locus_tag="WHR98_000887"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEZ2307586.1"
                     /translation="MSIMQVEVVSSEQNIYSGEASFVVVPTVQGELGIYPRHEPIMSL
                     VRPGALRLTVPGEDKEVLVAVSGGVLEVQPDKVTVLADVAVRSAEMDQARAEEAKKAA
                     EAGISQAKDDKALAEAHKALAAAIAQLKTLDYIRSHKK"
BASE COUNT         3002 a         3142 c         3161 g         2943 t
ORIGIN      
        1 ctatatgttt ttcaattatt tgccgttttg gtgcgaacct ctgcctttgc ccgtttcaga
       61 cggcattgtc cgaaatggtt gcctgcttcc tgccttattg acaaaaaaac gctttcccga
      121 taatatccta cgaaaattaa cctgccgatt tgacacagct tgcgggcata acagctaaag
      181 cgttccgaca atttcagctt tatcttccgc gcccgttgtg tccgacatcg ggctttgttg
      241 tatgggaaag acaatgatta ttttggacaa ggtttccaag cattaccaaa cgcgcgacaa
      301 gacccgtttt gccgccgtcg agccgaccag cctcgaaatc cgcgacggcg aaatcttcgg
      361 gctgatgggt tattcgggtg caggcaaatc caccctgttg cgcctgatta acctgttgga
      421 acgccccgac agcggcaagg tcaacgtctg cggacaagag ctgaccgcgc tcgatgccgc
      481 cgcattgcgt caggctcggc agaatatcgg catggtgttt cagcagttca acctgttgaa
      541 caaccgcacc gtcgccggca acgtcgcctt cccattggaa atcgccggat ggccgtctga
      601 aaaaatcaaa gcgcgcgttg ccgaatgtct cgaaatcgtc ggactgaccg aacgcgccgg
      661 ccactatccc gcccagcttt ccggcggaca aaaacagcgc gtcggcatcg cccgcgcgct
      721 cgcatccaag ccgcaagtca tcctcgccga cgaacccact tccgccctcg accccgccac
      781 cacgcgcagc gtcttggaat gtttggaaga catcaacaaa cgcttcaacg taaccatcgt
      841 catcgtaacc cacgaaatga gcgtcatcag acgactgtgc gaccgcgccg ccctgttgga
      901 taagggaaaa gtcgtcgaaa tcgtcgaagt acgcggcaac caaatccacg cccgatccga
      961 catcgggcgc gaactcatca gagaggactg aaatggcaga cctgaccttc caacaagccg
     1021 tttccaacat catcggtatg aaaggcgaaa tcgtccgcgc attgggcgaa accttcgtaa
     1081 tggtcggctt gtccaccaca ttcgccgtcg ttttcggcac gttgctgggc gtgttgctct
     1141 tcgtaacttc cagccgccaa ctgcattaca acaagccggt gaacttcctg ctcgacaacc
     1201 tcgtcaacct catgcgcgcc ttccccttcg tcatcctgat gattgccatg atacccgcga
     1261 cccgcaccat cgtcggcagc accatcggtc cggttgccgc ctcgctggtg ttgagcgtgt
     1321 cgggattgtt ttattttgcc cgactggtgg aacaaaacct gcgcgaagtc cccaaaggcg
     1381 tgattgaagc cgccgccgcg atgggtgcgc ctccgattgc catcgtctgc aaagtcctct
     1441 tgaacgaagc gcgcgcgggc atggtttcca gcattaccgt gcttgccatc gggcttttgt
     1501 catacagcgc ggcggcaggc atgataggcg gcggcggctt gggcgacctt gccatccgct
     1561 acggctacta ccgctaccaa accgaagtca tcgtcttcat cgtcgccctc ctcgtgctgc
     1621 tggtcatcct gattcaaagc accggcaaca cgttggcgcg gaaattggat aaacgttaaa
     1681 cccgaatgcc gtctgaacgc caaaaccccc accgctatcc gaaaaatgct ataaaatccc
     1741 cctgttcgcg gcaaatgccg tctgaacgcc gaatccggac ggcaggactc cctgcccgtc
     1801 atttttgttt gaaactgcca caacatcagg agaaaatatg aaaaccttct tcaaaaccct
     1861 ttccgccgcc gcactcgcgc tcatcctcac cgcctgcggc ggtcaaaaag acagcgcgcc
     1921 cgccgcatcc gcttctgccg ccgccgacaa cggcgcggcg aaaaaagaaa tcgtcttcgg
     1981 cacgaccgtc ggcgacttcg gcgatatggt caaagaacac atccaacccg agctggagaa
     2041 aaaaggctac accgtcaaac tggtcgagtt taccgactat gtacgcccga atctggcatt
     2101 ggctgagggc gagttggaca tcaacgtctt ccaacacaaa ccctatcttg acgacttcaa
     2161 aaaagaacac aatctggaca tcaccgaagt cttccaagtg ccgaccgcgc ctttgggact
     2221 gtacccgggc aagctgaaat cgctggaaga agtcaaagac ggcagcaccg tatccgcgcc
     2281 caacgacccg tccaacttcg cccgcgtctt ggtgatgctc gacgaactgg gttggatcaa
     2341 actcaaagac ggcatcaatc cgctgaccgc atccaaagcg gacattgccg aaaacctgaa
     2401 aaacatcaaa atcgtcgagc ttgaagccgc gcaactgccg cgtagccgcg ccgacgtgga
     2461 ttttgccgtc gtcaacggca actacgccat aagcagcggc atgaagctga ccgaagccct
     2521 gttccaagaa ccgagctttg cctatgtcaa ctggtctgcc gtcaaaaccg ccgacaaaga
     2581 cagccaatgg cttaaagacg taaccgaggc ctataactcc gacgcgttca aagcctacgc
     2641 gcacaaacgc ttcgagggct acaaatcccc tgccgcatgg aatgaaggcg cagccaaata
     2701 aggcagtcgt ataaaatgat gccgtctgaa ccgtatccgt gttcagacgg catttttgtc
     2761 ctttaatccg ccattccctg ccattccgcc gaatccggcg tatcgattcc gaacagcgac
     2821 aaagcgtgtg cgacactgtg cgccactatg tcgtccgccg tctgcggttt gcggtacatc
     2881 gcaggaacag ggggaaacac cacgccgccc atttccgtta cccgcttcat attgtccaaa
     2941 tgggcaaggt tcagcggcgt ttcgcgcacc atcagcacca gccgccgcct ttccttcaaa
     3001 accacatccg ccgcacgcgt caagaggttg tcgccgaagc cgtgcgcgac cgaggcaagc
     3061 gtccgcatcg aacagggggc gaccagcatc ccgtccgttt taaacgtacc gctggcaatg
     3121 cacgccccga tattgccgat cggatgcacg aagtccgcca aggcatatac ctcgtctctc
     3181 gcataagccg tttccgaagc gcgcgccatc tccgcacctt tcgataccac aaggtgcgtt
     3241 tcgatatctt gcgcgcgtaa aagttccaaa gccttcacgc cgtattggaa accgctcgcc
     3301 ccactgatgc cgattatcaa acgccgtacc atcatccgcc tttcccataa aaccgcctgc
     3361 aacggcaaat cggctattat agtgaaaaaa cagaaatccg ataaacacgg atacaaattg
     3421 tcggcaacac ccaatatccg ataaaatacc cgatttaaca tcctatctga ataggcacgg
     3481 gagggcggta tggcaaaagt aaaaggcgga ttggggcgcg gcttggattc gctgctcgcc
     3541 aacggcgcgg acaacagcag cggcgaccga ttgaccacgg ttgcggttaa agatatccgg
     3601 cccggccgct atcaggcgcg tgttcaaatc gatgacgaag ccttgcagga gctggcggat
     3661 tcgattaagg cgcaaggcgt gatacagccc gtcatcgtgc gcgaacacgg actgtcccga
     3721 tacgaactga ttgcggggga gcggcgttgg cgtgccgcac agattgccgg cctgaccgaa
     3781 atccccgccg ttatcaaaac catcagcgac gaaaccgcgt tggcaatggg tttgatcgaa
     3841 aacctccagc gcgaaaacct caaccccatc gaagaagcac aaggcttgaa acgccttgcc
     3901 gacgagttcg gactgaccca cgaaaccatc gcccaagccg tcggtaaaag ccgaagcgcg
     3961 atttccaaca gcctgcgcct tttaagcctg cccgaacccg tgcaggaaat gctttaccaa
     4021 cgccgcctcg aaatggggca cgcccgcgca ctgctgaccc tgcccgtcgt cgaacagctc
     4081 gagttggcgc aaaaggccgt caaaaacggc tggtcggtgc gcgaagtcga gcgccgcagc
     4141 caagccgccc ttcaaaacaa acgtcccgag cccaaaaaaa ctgccgccgc cgacatcggc
     4201 cgcctgaatg atttgctgac tgaaaaactg ggtgtcaacg ccgaaatcaa aaccgccaac
     4261 cataaaaaag gcagaatcat cctgcatttc gacacgcccg aaaccttcga ccatatcttg
     4321 aagcagttgg gcatagatta ccgaccttaa ttttgcggga tataccgtct gaaatataga
     4381 gaatagcttt ccagattgta agtgggaaat ataattctat tgacattttt ctgcttcacg
     4441 taagaatcgt tttcctgttt tcatttttaa ttttcgagga aattatgaac acacgcatca
     4501 tcgtttcggc tgcgttcgtt gcgttggcat tagcaggttg cggctcaatc aataatgtaa
     4561 ccgtttccga ccagaaactt caggaacgtg ccgcgtttgc cttgggcgtc agcccaaatg
     4621 ccgtaaaaat cagcaaccgc agcaatgaag gcatacgcat caactttacc gcaactgtgg
     4681 gtaagcgcgt gagccaatgc tatgttacca gtgtaatcag cacaatcggc gttaccactt
     4741 ccgatgcaat ttgtttggga ggcggaacgc acaaaggcaa aagtcaatgc aatgctttgc
     4801 ttaaagcggc aggccgttgc taatccttta ttcggaaaag gtcgtctgaa aatattttca
     4861 gacgatcttt tatttattga gcaaattccc caaactgccg acaatccgac cgataaactg
     4921 ctacaatttc gcgttgattt tttattattt ccacgtaaag caaacaaatc acgtaagaac
     4981 attaaaaatg taaagaaatt gcggacaaac tccttaatat cctgtaatta tatgtaatgt
     5041 gtgttagaat gacacttgtc gccgttattc aggcggcgag cgcggcggat tgggatacgt
     5101 tgtttcacaa agattaactg tcgcttgacg taataaggct tctaaattat attagccgcg
     5161 ccccaaatcc gaggcggaaa cattcccttt atgaagcaga ttatcatcct acaatccgcc
     5221 gtattgtcca tatgcgccgc agttgccttt gctgtatggg gttttgccgg attcctttcg
     5281 gcggtcggtg gcggtttgtc ctacctgctt cccacgtttg ttgcagtttt acttttaaaa
     5341 cttttcaggg gaaacccctt cctgcaaagc aggatgttcg tcttcggaga gattttaaaa
     5401 gtagtgctgt cgctgttgtc catgctcgcc gtatttgctg tatggcatca atcgttggtg
     5461 ttcgccccgt ttctgatggg gctgctcggt gtcagccatt tggttttttt agtattgttg
     5521 agagtgaaag attatggcag gtgaaaccat taccgctgcc gactacatca agcaccactt
     5581 gcagagcttg accagtttgt cggatgttac tcagggtcag ggactgaaaa acattgctga
     5641 tttttcgttt attaaccttg atgccgtctt ttttgccgtc ctgttgggcg taatcggcag
     5701 cttcctgttg tggcgcggtg cgaaaaaagc aacggcaggc gttcccagac gtttccaggc
     5761 tgccgtggaa atcttgtttg agtttgtgga cgatatgtgt aagagcatca ttcacaacga
     5821 aaagtctaga aaagccgtcg cgccgttggg tctgacgctg tttgtctgga ttttcctgat
     5881 gaacgcgatg gatatgctgc cggtcgattt gctgccgatg gtatggcagg gcattaccgg
     5941 caaccatcac gccctgttgc gcgtcgtacc gactgccgat ttgaacacca ctttggcact
     6001 cgctgtcggc gtgttgctga tttgtatcta ttacaacatc aaaatcaaag gattgggtgg
     6061 ctggtttcac gagttgttca gcgcgccgtt cggtgcaaaa ctcgcacctg cgaactttct
     6121 gttgaatttg gtcgagtttc tttctaaaac cgtatcccac ggtatgcggt tgttcggcaa
     6181 tatgtatgcg ggcgagttgg tattcttgct gatagccttg cttggcggtg cttgggcggc
     6241 ttccggcagc gtcgaagtca tggatccgat tctgtttgta ttccacatta ttgccggttt
     6301 ggcatgggcg attttccata ttttggtgat taccctgcag gcgtttattt tcatggcgtt
     6361 ggcgttcgtt tatatcggac aggcacatga tgcgcactga ttttcctaag tagtttgttt
     6421 ttgtagttta acctttgttt ctttaaggag tttaaaatgg gtttgattgc tatcgcatgt
     6481 ggtttgatcg ttgcattggg tgcattgggt gcctctatcg gtatcgcaat ggtcggttct
     6541 aaatatttgg agtcttctgc ccgtcagccc gaactgatcg gtccgctgca aaccaaacta
     6601 ttcctgattg ccggtttgat tgatgccgca ttcttgattg gtgtcgccat tgcactgctg
     6661 ttcgccttcg ttaacccgtt tgcaggtgca taatcaggac ggattcgtcc gttccgtaca
     6721 ggcgcagcct gtttgattaa ccccagtacg aaggttaagt aacgtgaata tcaatgcaac
     6781 attattcgct caaatcatcg tctttttcgg tttggtatgg tttaccatga aattcgtgtg
     6841 gccgccgatt gcaaaagctt tggatgagcg tgccgcaaaa gtcgccgaag gcttggctgc
     6901 cgccgagcgt ggtaaaagcg attttgagca ggctgaaaaa aaggttgcag aactcttggc
     6961 agaagggcgt aatcaggttt ccgaaatggt tgccaacgcc gaaaaacgtg ccgccaaaat
     7021 tgtcgaagaa gccaaagaac aggcttcttc cgaggcggcg cgcattgcag ctcaggcaaa
     7081 ggccgatgtg gagcaggaat tgttccgcgc acgcgaatcc ctgcgcgagc aggttgccgt
     7141 gttggctgtc aaaggtgccg aatctatttt gcgcagcgaa gtcgatgctt ccaaacacgc
     7201 aaaactgctc gataccctga aacaggagct gtaatcttat ggcagagttc gcaacgattg
     7261 ccagacctta tgcaaaggca ttgttcggtc tggctcagga aaaaaaccaa attgagtctt
     7321 ggttgggcgg actggaaaaa cttgcggcgg ttgttcagga agggaagatg gcttcattga
     7381 ttgaccgtcc tgaaacgaat gcttcagaaa aagcagatat cctcatcgat ttggtcggtt
     7441 tgaaagacaa ggagttgaaa aactttgtta tcgtcttggc cgggcagaaa cgtttgtcga
     7501 tattgccgga agtatatgct caatatcaag acttgacctt atcattcaac catatcaaat
     7561 ctgccgtcat ttacagtgcc tatccgttga ccgacaaaca ggtcggcgag ttggcgcaaa
     7621 tgctgaataa gcgtttcgac agcgagctga aaatctctgt cgaaatcgaa ccggagctga
     7681 ttggcggcat aaaagttgaa gtgggtgatc aggttttgga tttgtctgta caaggcaaat
     7741 tgagtgcctt gtacacgact atgacgaatt aggagagttt tcatgcagct taatcctgct
     7801 gaaattagcg atttgattaa agccaagatc gaaaatctgt ctgtaaatgc cgaagtgcgt
     7861 actcgtggta cggtgatttc ggtaactgac ggtatcgttc gcatccatgg tttgtcagat
     7921 gcaatgcaag gtgagatgct cgaattcccg ggtaacactt tcggcttggc gatgaacctg
     7981 gagcgcgact ccgtcggcgc cgtagtgttg ggcgagtacg aacatattaa agaaggcgac
     8041 acggttacct gtaccggtcg tatcttggaa gtgccggtcg gacgcgaact ggtcggacgc
     8101 gtcgttgatg cattgggtcg gcctatcgac ggcaaaggcc cgattaatac aactttgacc
     8161 gcccctatcg aaaaaatcgc accgggcgtg attgcgcgca aatcggttga ccagccgatg
     8221 caaaccggtc tgaaggcgat tgactctatg gttcctgtcg gtcgcggtca gcgtgagttg
     8281 attattggcg accgtcaaac cggtaaaacg gccgtagcat tggatgccat cgtcaaccaa
     8341 aaaggtacgg gtgttatctg tatctatgtc gctatcggtc aaaaagcatc ttctattgcc
     8401 aacgtggtcc gcaaattgga agagcatggc gcgatggaac acacgattgt ggttgctgca
     8461 actgcatctg aagcggcggc attgcaatat atcgcacctt actccggttg tacgatgggt
     8521 gaattcttcc gcgatcgtgg cgaagatgcc ttgattgttt atgacgattt gtccaaacag
     8581 gctgtggctt accgtcaaat ttccctgctt ttgcgccgtc cgcccggccg cgaagcctat
     8641 cccggcgatg tgttctacct gcactcccgt ctgttggaac gtgcagcacg tgtcaatgaa
     8701 cacgaagtgg agaaattgac caacggcgaa gtaaaaggca aaaccggttc tctgaccgcg
     8761 ttgccgatta tcgaaaccca agcgggcgac gtatctgctt tcgttccgac taacgtcatt
     8821 tcgattaccg acggtcagat tttcttggaa accgacctct tcaacgccgg tatccgtcct
     8881 gcaatcaatg ccggtatttc cgtatcccgc gtaggcggtg ctgcacaaac caaagtgatt
     8941 aaaaagctgg gtggcggtat ccgtttggcg ttggcgcaat atcgtgaatt ggcggcgttc
     9001 tcgcaatttg catccgattt ggatgaagct acgcgcaaac aattggagca tggcgaagtc
     9061 gtaaccgaac tgatgaaaca gaaacagttc agtacgttga atacggctga aatggctttg
     9121 accctttggg caatcaacaa cggttcgtat tctgatgttc cggttgccaa agctctggct
     9181 tttgaatctg aatttttgag ctttgtccgt acccaacatc cggaagtttt ggaagccgtc
     9241 aatgcttcag gtgcaatgtc cgacgagagc gagaaaacgc ttgaagcagc catgaaatcc
     9301 ttcaaatctt cttacgccta tcaggcataa ggcttgaagt gaaaggagtc tgaaatggca
     9361 gtaggaaaag agattctcac caaaatccgc agtgttcaga atacccaaaa gatcactaaa
     9421 gcgatgcaga tggtgtcaac ctctaaaatg cggaagactc aggaacggat gcgtttggcg
     9481 cgtccgtatg ccgaaaaagt gcgtatggtg atgagccatc ttgcgcaaac caataccgat
     9541 catggtattc cgttactgga atctcatcgg gaaatcagac gtgtcggttt tattttgatt
     9601 acgtctgata agggtttgtg tggcggtttg aacgccaacg tgctgaaaaa gtttttggca
     9661 caagttcaag agtatcggaa tcaaggtatt gaagaggaaa tcgtatgcct tggcagtaaa
     9721 ggtctgatgg cgtgtcagag cattggtctg aatgtggttg ccagtgccgt aaatttgggc
     9781 gataccccaa aaatggaaat gctgctcgga cctttgacag aactcttcca acggtatgag
     9841 aaacatgaaa ttgacagaat ccatctggtg tattcgggtt ttgtcaatac catgcgtcaa
     9901 gaaccgagaa tggaagtatt gctgcctatc ggtgagaacg tgattggcga ttcagctccc
     9961 aaatcaccgt tcagctggga ataccgctac gaaccgactg cacttgcagt gttggaatat
    10021 ctggttcgcc gctatttaga gtctgtggtt tatcaggcgt tgagcgacaa tatggcatcc
    10081 gaacaggcag cccgcatggt tgccatgaaa gctgcaacag acaatgcagg caatgccatc
    10141 aaagagttgc gtttggtata taacaaatcg cgtcaagctg cgattaccac ggaattgtca
    10201 gaaattgtag caggtgcggc ggctgtctga tgccgtctga atcctgtacg gaaattagga
    10261 tacgataatg agccaaggca aaatcgtaca aattatcggt gcggttgttg acgtggaatt
    10321 tccacgcgac atgattccgc gcgtttacga cgctttgaaa ttagacgaaa acggtctgac
    10381 tttggaagtc caacagcttt tgggcgacgg cgtagtccgt accattgcga tgggcagctc
    10441 ggacggtttg aaacgcggca tgactgtgaa caataccggt gcgcccatta ctgtgccggt
    10501 aggtaaaggt acgttgggac gcattgtcga tgtattggga acgcctgttg acgaagcagg
    10561 tccgatcgat accgacaaga gccgtgccat ccaccaagcc gcccctaagt ttgacgaact
    10621 gtcttccaca accgaattgc tcgaaacggg cattaaagtg attgacttgc tgtgtccgtt
    10681 tgccaaaggc ggtaaagtag gtctgttcgg cggtgccggt gtgggcaaaa ccgtgaacat
    10741 gatggaattg atcaacaaca tcgccaaagc gcacagcggc ttgtccgtgt tcgcaggcgt
    10801 gggtgagcgt acccgcgaag gtaacgactt ctaccacgag atgaaagatt ccaacgtatt
    10861 ggataaagtg gcaatggttt acggtcagat gaacgaacct ccgggcaacc gtttgcgcgt
    10921 cgcattgacc ggtttgacca tggcggaata cttccgtgac gaaaaagacg aaaacggcaa
    10981 aggccgcgac gtattgttct tcgtggacaa catctaccgt tacactctgg ccggtaccga
    11041 agtatccgca ttgttgggcc gtatgccgtc tgcagtgggc taccaaccga cattggcaga
    11101 agaaatgggt cgtttgcagg agcgtattac ctctacccaa accggttcta ttacttccat
    11161 ccaagccgta tatgtacctg cggacgattt gaccgacccg tctccggcaa caacgttcgc
    11221 ccacttggac gcaaccgtcg tattgagccg cgatattgcc tctttgggta tttacccggc
    11281 agtcgatccg cttgattcca cttcgcgcca attggatccg atggtcttgg gtcaagaaca
    11341 ctacgacgtg gcgcgcggcg tacagtccac cctgcagaaa tacaaagaat tgcgcgacat
    11401 catcgccatc ttgggtatgg acgaattgtc tgatgaagac aaactgaccg taatgcgtgc
    11461 gcgtaaaatc caacgcttcc tgtcccaacc gttccacgtt gccgaagtgt ttacaggttc
    11521 tccgggtaaa tatgtcgccc tgcgcgatac cattgccggc ttcaaagcca tcttgaacgg
    11581 cgaatacgat catctgcccg agcaggcatt ctatatggtc ggcagcatcg aagaagcggt
    11641 tgagaaagcg aaaaccttaa actgaggagg tcggcatgag catcatgcaa gttgaggtgg
    11701 tcagtagcga gcaaaacatc tattcgggcg aagccagctt tgtagtggtt ccgaccgttc
    11761 aaggtgagct tggtatttac ccgcgacacg agccgattat gagtttggtg cggccggggg
    11821 ctttgcgttt gaccgttccg ggcgaggata aagaggtttt ggttgctgtt tccggcggtg
    11881 ttttggaagt acagcctgat aaagtaactg tcttggcgga tgttgccgtc cgcagtgcgg
    11941 agatggatca ggcacgtgcg gaagaggcga aaaaagccgc agaagcgggc atttcccaag
    12001 ctaaagacga taaggctttg gcggaagcac ataaagcatt ggctgctgcg attgcacagc
    12061 tcaaaacttt ggactatatc cgttcgcaca agaaataaac ttgtttggtt tggaaaagca
    12121 cgaccgtttg gtcgtgcttt ttattttccg gatttaaatt aaagactgtg tttggatatg
    12181 gcgttggcag gcatagcctg ctttaaggta ttcaataggg cagcctgccg cctaaccgaa
    12241 acatatag
//
LOCUS       DAWGNT010000044        12177 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.044, whole genome shotgun sequence.
ACCESSION   DAWGNT010000044 DAWGNT010000000
VERSION     DAWGNT010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12177
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.044"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(405..1520)
                     /locus_tag="WHR98_000888"
     CDS             complement(405..1520)
                     /locus_tag="WHR98_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEZ2307587.1"
                     /translation="MKIKALMIAAALLAAADVHAAPQKAKTASAKAAKAAKAAKAAKA
                     AKAAKAAKAAKAAKVAKVAKVAKVAKVAKVAATAQKEAAPAQQQGGIRFSDGIAAVAD
                     NEVITRRRLAEAVSEAKANLPKDAQISESELSRQVLMQLVNQSLIVQAGKRRNIQASE
                     AEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEAEIDTFLEQAQK
                     QGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYSQ
                     DASAGNGGDLGWFADGVMVPAFEEAVHALKPGQVGAPVRTQFGWHIIKLNEVREAGTP
                     QERIRNSVRQYIFQQKAEQATVNLLRDLHSGAYVDIR"
     gene            complement(1625..4033)
                     /locus_tag="WHR98_000889"
     CDS             complement(1625..4033)
                     /locus_tag="WHR98_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEZ2307588.1"
                     /translation="MARLFSLKPLVLALGFCFGTHCAAADAVAAEETDNPTAGGSVRS
                     VSEPIQPTSLSLGSTCLFCSNESGSPERTEAAVRGSGEASIPEDYTRIVADKVEGQSQ
                     VQVRAEGNVVVERNRTTLNTDWADYDQSGDTVTAGDRFALQQDGTLIRGETLTYNLEQ
                     QTGEAHNVRMETEHGGRRLQSVSRTAEMLGEGHYKLTETQFNTCSAGDAGWYVKAASV
                     EADREKGIGVAKHAAFVFGGVPIFYTPWADFPLDGNRKSGLLVPSLSAGSDGVSLSVP
                     YYFNLAPNLDATFAPSVIGERGAVFDGQVRYLRPDYAGQSDLTWLPHDKKSGRNNRYQ
                     AKWQHRHDISDTLQAGVDFNQVSDSGYYRDFYGNKEIAGNVNLNRRVWLDYGGRAAGG
                     SLNAGLSVLKYQTLANQSGYKDKPYALMPRLSADWRKNTGRAQIGVSAQFTRFSHDSR
                     QDGSRLVVYPDIKWDFSNSWGYVRPKLGLHATYYSLNRFGSQEARRVSRTLPIVNIDS
                     GATFERNTRMFGGGVLQTLEPRLFYNYIPAKSQNDLPNFDSSESSFGYGQLFRENLYY
                     GNDRINTANSLSAAVQSRILDGATGEERFRAGIGQKFYFKDDAVMLDGSVGKKPRNRS
                     DWVAFASGSIGSRFILDSSIHYNQNDKRAENYAVGASYRPAQGKVLNARYKYGRNEKI
                     YLKSDGSYFYDKLSQLDLSAQWPLTRNLSAVVRYNYGFEAKKPIEMLAGAEYKSSCGC
                     WGAGVYAQRYVTGENTYKNAVFFSLQLKDLSSVGRNPADRMDVAVPGYIPAHSLSAGR
                     NKRP"
     gene            4103..5107
                     /locus_tag="WHR98_000890"
     CDS             4103..5107
                     /locus_tag="WHR98_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEZ2307589.1"
                     /translation="MQRQTELKNWLQTIYPERDFDLSFAAADADFRRYFRATFSDGSS
                     VVCMDAPPDKMSVAPYLKVQKLFDMVNVPQVLHADTDLGFVVLNDLGNTTFLTAMLQE
                     QGEAAHKALLLEAIGELVELQKASREGVLPEYDRETMLREINLFPEWFVAKELGRELT
                     FKQRQLWQQTVDTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYD
                     LVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPEAFDEFYRWFEWMGVQRHLKVA
                     GIFARLYYRDGKDKYRPEIPRFLNYLRRVSRRYAELAPLYALLVELVGDEELETGFTF
                     "
     gene            complement(5164..5844)
                     /locus_tag="WHR98_000891"
     CDS             complement(5164..5844)
                     /locus_tag="WHR98_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEZ2307590.1"
                     /translation="MKSRHLALGVAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNY
                     TVLANPIPQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKE
                     MLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKV
                     LAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKV
                     REEQKAAQ"
     gene            complement(6138..6245)
                     /locus_tag="WHR98_000892"
                     /pseudo
     CDS             complement(6138..6245)
                     /locus_tag="WHR98_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            6303..7841
                     /gene="murJ"
                     /locus_tag="WHR98_000893"
     CDS             6303..7841
                     /gene="murJ"
                     /locus_tag="WHR98_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEZ2307591.1"
                     /translation="MNMLGALAKVGSLTMVSRVLGFVRDTVIARAFGAGMATDAFFVA
                     FKLPNLLRRVFAEGAFAQAFVPILAEYKETRSKEATEAFIRHVAGMLSFVLVIVTALG
                     ILAAPWVIYVSAPGFAKDADKFQLSIDLLRITFPYILLISLSSFVGSVLNSYHKFSIP
                     AFTPTFLNVSFIVFALFFVPYFDPPVTALAWAVFVGGILQLGFQLPWLAKLGFLKLPK
                     LNFKDAAVNRVMKQMAPAILGVSVAQVSLVINTIFASYLQSGSVSWMYYADRMMELPS
                     GVLGAALGTILLPTLSKHSANQDTEQFSALLDWGLRLCMLLTLPAAVGLAVLSFPLVA
                     TLFMYREFTLFDAQMTQHALIAYSFGLIGLIMIKVLAPGFYARQNIKTPVKIAIFTLI
                     CTQLMNLAFIGPLKHVGLSLAIGLGACINAGLLFFLLRRHGIYQPGKGWAAFLAKMLL
                     SLAVMGGGLYAAQIWLPFDWAHAGGMQKAARLFILIAVGGGLYFASLAALGFRPRHFK
                     RVES"
     gene            7974..8930
                     /locus_tag="WHR98_000894"
     CDS             7974..8930
                     /locus_tag="WHR98_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheT family hydrolase"
                     /protein_id="HEZ2307592.1"
                     /translation="MILTPPDTPFFLRNGNADTIAAKFLQRPAPAYRRELLPDSTGKT
                     KVAYDFSDGISPDAPLVVLFHGLEGSSRSHYAVELMLAVRSRGWHGAVVHFRSCGGIA
                     NTAPVFYHLGDTAEIAFTLDTLAARYREIYAVGVSLGGNALAKYLGEQGENALPQAAA
                     VISAPVDAEAAGNRFDSGITRLLYTRYFLRTLIPKARSLQGFQTAFAAGCKTLGEFDD
                     RFTAPLHGFADRHDYYRQTSCKPLLKHVAKPLLLLNAANDPFLPPEALPTPDEVSEAV
                     TLFQPAHGGHVGFVSSTGGRLHLQWLPQTVLSYFDSFRTNRR"
     gene            8981..9763
                     /gene="trpC"
                     /locus_tag="WHR98_000895"
     CDS             8981..9763
                     /gene="trpC"
                     /locus_tag="WHR98_000895"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEZ2307593.1"
                     /translation="MTDILNKILTAKAQEVAAQKAAVPLEHIRALAAEAAPVRSFIGS
                     IRGKHRLNLPAVIAEIKKASPSKGLIRPDFRPAEIARAYENAGAACLSVLTDEPYFQG
                     SPEYLKQAREAVSLPVLRKDFIIDEYQVYQARAWGADAVLLIAAALEREQLERFEAVA
                     HELGMTVLLELHDESELEKCRNLTTPLWGVNNRNLRTFEVSLDQTLSLLPALEGKTVV
                     TESGITGKADVEFMRARGVHTFLIGETFMRADDIETEVGKLF"
     gene            9828..12128
                     /gene="recQ"
                     /locus_tag="WHR98_000896"
     CDS             9828..12128
                     /gene="recQ"
                     /locus_tag="WHR98_000896"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HEZ2307594.1"
                     /translation="MHRPTAKQILHEVFGYPEFRGRQEAVINTLAGGRSLMVLMPTGG
                     GKSLCYQIPALMREGVAVVVSPLIALMNDQVASLHVAGIEAAAVNSGTSADEAREIAD
                     KLAQGRLKLLYVAPERLVTDRFLRFLDQQTVSLFAIDEAHCVSQWGHDFRPEYQQLGI
                     LAERYPNVPRIALTATADAATRADIKHYLHLDNAPEFVSSFDRPNIYYQVIEKNNGKK
                     QLLDFIRKEMTGQSGIVYCLSRKKVEDVAQFLRENGLNAIPYHAGLSMDVREENQRRF
                     THEDNIIVVATVAFGMGIDKPDVRFVAHLDMPQSVEHFYQESGRAGRDGLPAASWLCY
                     GLNDWVLLRERIAEGNSDEVQKQIEMQKLDAMLSVCETAACRRVLLLKHFGEESEPCG
                     HCDNCLHPPVRFDGTVLVQKLLSCVYRAGQRFAAGYITNLLRGKSDDWIRGNRHEQLS
                     TFGIGTELSDKEWRSVIRQCISLGYLTVNITRYQALQLTEAAKKVLKGETEVMLRPLK
                     RDKPAARTLKDNWLRTEREERLWQALRVWRMKQAEAEGIPAYMIFGDKTLRDLVEKMP
                     QNLNGLHDIYGLGEAKIDRFGHGILKVCQNAADFSHDAVIRPQTEREQQLRQKLEAWR
                     YEQARAENCALHAVLSDESLADMLAATPETETDLEGVHGLGSVRAAKYGRDILAVCRP
                     FSDGIDEAAKRKRRLMRALIQWCGETAKHEQSEPYRILSKAALRAIAAKQPEGLAELA
                     AVYGVGEEKAARYGAAVLTVLGQNAV"
BASE COUNT         2449 a         3394 c         3492 g         2842 t
ORIGIN      
        1 ttcgcgggaa tgacggcata gaggtttctg ttttcccgat aaattcctgt tacttttcgt
       61 tgctagattc ccgcctacgc gggaatgacg atggaaagat tgttgttgct tcggataaat
      121 ttctgcagtt ttaaataacc ggattcccgc ctgctcggga atgacggcat aggttttttt
      181 gtttttccga taaattacca caacccaaaa tcccgtcatt cccgcgacgg cgggaatcca
      241 gacctttaaa ttccagccat tcccgataaa ttcctgttac ttttcgtttc tagattcccg
      301 ctttcgcggg aatgatgaat gacggtgtaa aagtaactcg aaatccaaaa agccataccg
      361 cccggatttt tgccgatcgg tatggctttt tgcttcaaac cgccttagcg gatgtcgaca
      421 tacgcgccgg aatgcaggtc acgcaacagg ttgacggttg cctgttcggc tttttgttgg
      481 aagatgtatt gccgcacgga attgcggata cgttcctgag gtgtgccggc ctcgcgcact
      541 tcgttcaatt tgatgatatg ccagccgaat tgggtgcgga cgggcgcgcc gacctgtccg
      601 ggtttgagcg cgtggacggc ttcttcaaag gcgggaacca tcacgccgtc ggcaaaccag
      661 cccaaatctc cgccgttgcc cgcgctcgcg tcttgcgaat attggcgcgc caggctggaa
      721 aagtctgtgc cgctgcgggc ctctccgtag attttgcgga tggtgctttc cgcgccgacg
      781 gcggcgtttt cgctgtcagc tttaatcagg atgtgttggg cgcggtattg gcgcaacggt
      841 gcgccttcgg gcagggtgat gccttgtttt tgcgcctgct cgaggaaggt atcgatttca
      901 gcttcgctca cgcggctgtt ctgcatcact gcctgctggc ggactttttc ggcaatgatg
      961 ttgtcggcaa aatcgcggcg ttgggcgggg ctgaggtttt tgagggcggg attttttgcg
     1021 acgacggcat cgatttccgc ttcgcttgct tgaatgttgc ggcgtttgcc cgcctgtaca
     1081 atcagggatt ggttgacaag ctgcatcagc acctgtcggg acagctcgga ttcgcttatc
     1141 tgcgcgtctt tgggcaggtt ggctttggct tcggaaacgg cttcggcaag ccggcggcgc
     1201 gtgatgactt cgttgtcggc aacggcggca atgccgtctg aaaagcggat accgccctgc
     1261 tgttgtgcgg gtgcggcttc tttttgcgcc gtggcggcaa ctttggcaac tttggcaact
     1321 ttggcaactt tggcaacttt ggcaactttg gcagctttgg cagctttggc agctttggca
     1381 gctttggcag ctttggcagc tttggcagct ttggcagctt tggcagcttt ggcggatgcg
     1441 gtttttgcct tttgcggtgc ggcgtggaca tcggctgctg ccagcaatgc ggcggcaatc
     1501 atcagggctt tgattttcat cattctttcc ttatcgtttg aatcctgcct ttgatggcgg
     1561 gtttggggtt gtcggtggaa tgccgtcttg tgcgggaacg gtgctcctgc cgggtttccg
     1621 acggtcaggg ccgtttgttg cgtccggcgg aaagagagtg ggcggggata tagccgggaa
     1681 cggcgacatc catcctgtct gcggggtttc tgccgacact gctgaggtct ttcaactgaa
     1741 gtgagaaaaa gacagcgttt ttgtaggtgt tttcgccggt aacgtagcgt tgggcgtaca
     1801 cgcccgcgcc ccagcagccg caactgcttt tgtattccgc acccgccagc atttctatcg
     1861 gttttttggc ttcaaaaccg tagttgtaac ggacgacggc cgacaggttg cgcgtcagcg
     1921 gccattgtgc ggacaggtcg agctggctga gtttgtcgta aaaataggaa ccgtcggact
     1981 tcaggtagat tttttcgttg cgcccgtatt tgtagcgggc gttcagcact ttgccctgtg
     2041 cgggacggta gcttgcaccg acggcgtagt tctcggcgcg tttgtcgttt tggttgtagt
     2101 ggatgctgct gtcgaggatg aagcggctgc cgatgctgcc ggaggcaaat gccacccagt
     2161 cggaacggtt gcgcggtttt ttgccgacgc tgccgtcaag catcaccgca tcatccttga
     2221 aatagaattt ctgaccgatg ccggcgcgga aacgctcttc ccccgtcgcg ccgtccaaaa
     2281 tacggctttg cacggcggcg gaaaggctgt ttgcggtgtt aatcctgtcg ttgccgtaat
     2341 agaggttttc gcgaaagagc tgcccgtagc cgaagctgct ttccgacgaa tcgaaattgg
     2401 gcaggtcgtt ttgggatttg gcaggaatat agttgtagaa caggcgcggc tcgagggttt
     2461 gcaggactcc gccgccgaac atccgcgtat tccgctcaaa agttgcgccg ctgtcgatgt
     2521 tgacaatggg cagagtgcgg ctgacgcgtc gggcttcttg gctgccgaag cggttgaggc
     2581 tgtaataggt ggcgtgcagt ccgagtttgg gacggacgta accccagctg ttgctgaaat
     2641 cccatttgat gtcgggatag acgacgaggc ggctgccgtc ttggcggctg tcgtggctga
     2701 agcgggtaaa ttgtgcggac acgccgattt gcgccctgcc ggtgtttttg cgccaatcgg
     2761 cggaaaggcg cggcatcagg gcatacggtt tgtctttgta gccgctttgg tttgccagcg
     2821 tctggtattt cagaaccgaa aggccggcat tcaggctgcc gcccgccgcc ctgccgccat
     2881 aatccagcca tacacggcgg ttgaggttga cgttgccggc gatttctttg ttgccgtaaa
     2941 agtcgcggta gtagccgctg tcggagactt ggttgaaatc gacacccgcc tgaagcgtgt
     3001 cggaaatgtc gtgccgatgc tgccatttcg cctgatagcg gttattcctg ccgcttttct
     3061 tgtcgtgcgg cagccaggtc aggtcggact ggccggcata atccggccgc aggtagcgta
     3121 cctgcccgtc aaagaccgcg ccgcgttcgc cgatcacgct gggcgcgaac gtggcatcga
     3181 gattgggggc aaggttgaaa taatagggaa cggaaaggga aacgccgtcc gaaccggcgg
     3241 acagtgaggg aacaagcagg ccgcttttgc ggttgccgtc aagcgggaag tccgcccaag
     3301 gggtgtagaa aatgggaacg ccgccgaaca cgaaggcggc gtgtttggca acgcctatgc
     3361 ctttttcccg atcggcttcg acggaagcgg ccttgacata ccagccggca tcgccggcgg
     3421 aacaggtgtt gaattgggtt tccgtcagtt tgtaatgccc ttcgcccaac atttcggcgg
     3481 tgcggctgac gctttgcagc cgccgtccgc cgtgttcggt ttccatacgg acgttgtgcg
     3541 cttccccggt ctgctgctcg agattgtagg tcagggtttc gccccgaatc agcgtaccgt
     3601 cctgttggag ggcgaaccgg tcgcctgcgg taacggtgtc gcccgactgg tcgtaatccg
     3661 cccaatcggt attgagggtc gtccggttgc gttcgacgac gacgttgcct tcggcacgca
     3721 cctgcacctg cgactgtcct tccaccttgt cggcaacaat gcgcgtatag tcttcgggga
     3781 tggatgcttc gccgctgcct cggacggcgg cttcggttct ctcggggctg ccgctttcgt
     3841 tactgcaaaa caggcaggtc gaaccgaggc tcaggctggt aggctgtatg ggttcggaca
     3901 cgctccgaac gcttcctccg gcggtcggat tgtccgtttc ctccgccgca acggcatcgg
     3961 cggcggcgca atgcgtgccg aaacagaagc ccaatgccag caccagtggt ttgagtgaaa
     4021 ataaacgagc caaaatcgcc cctcaagtcg gtttgccagt tagaatagcg tttattgtaa
     4081 cctgaaatgc tttagtactg ttatgcaacg gcaaaccgaa ctgaaaaatt ggcttcagac
     4141 catctatccc gaacgggact tcgatctgtc cttcgcggcg gcggatgctg atttccgccg
     4201 ctatttccgt gcaacgtttt cagacggcag cagtgtcgtc tgcatggatg caccgcccga
     4261 caagatgagt gtcgcacctt atttgaaagt gcagaaactg tttgacatgg tcaatgtacc
     4321 gcaggtattg cacgcggaca cggatttggg gtttgtggta ttgaacgact tgggcaatac
     4381 gacgtttttg accgcgatgc ttcaggagca gggcgaagcg gcgcacaaag ccctgctttt
     4441 ggaggcaatc ggcgagctgg tcgaattgca gaaggcaagc cgtgaagggg ttttgcccga
     4501 atatgaccgt gaaacgatgc tgcgcgaaat caacctgttc ccggaatggt ttgtcgcaaa
     4561 agaattgggg cgcgaattaa cattcaaaca acgccaactt tggcagcaaa ccgtcgatac
     4621 gctgctgccg cccctgttgg cgcagcccaa agtctatgtg caccgcgact ttatcgtccg
     4681 caacctgatg ctgacgcgcg gcagaccggg cgttttagac ttccaagacg cgctttacgg
     4741 cccgatttcc tacgatttgg tgtcgctgtt gcgcgatgcc tttatcgaat gggaagaaga
     4801 atttgtcttg gacttggtta tccgctactg ggaaaaggcg cgggctgccg gcttgcccgt
     4861 ccccgaagcg tttgacgagt tttaccgctg gttcgaatgg atgggcgtgc agcggcactt
     4921 gaaggttgca ggcatcttcg cacgcctgta ctaccgtgac ggcaaagaca aataccgtcc
     4981 cgaaatcccg cgtttcttaa actatctgcg ccgcgtatcg cgccgttatg ccgaactcgc
     5041 cccgctctac gcgctcttgg tcgaactggt cggcgatgaa gaactggaaa cgggctttac
     5101 gttttaaacc caatcaaaat gccgtctgaa aaccaagttt cagacggcat ttttcaaacg
     5161 ggcttactgc gcggcttttt gttcttcgcg tactttgtcc gccaaaaggt cgatggtgtt
     5221 cataccggac tcccagtcgg caaattcaac tttatattta ccgccgacga taaccgtggg
     5281 cgtaccgtcg atttggaagg tttcggtcag ctcctgcatt ttgtcggcgc gcgcctggct
     5341 ttcgggggac tcgtaggcgg caaggacttt tttgccgtca aaggcggttt gttcgcccag
     5401 ccattttttg aggacttccg gattttgcag cttgattttt tggttgacca tcgcatcgaa
     5461 aatatggctg ttcgccacat ctttgctgtc ggcggcagcc atatcgacgg cggcggcgag
     5521 gcgtgccagc gtcagcattt ctttctgcca gacgacgtgt tcggtacgca ggtacatatc
     5581 gtctttaaaa gacttggcgt gtttgcttaa aacaggttcg aggtgggcgc agtgcggaca
     5641 gaaatagccg aaaaactcaa ggacttcgac tttgcctgcc tgctgttggg gaatcgggtt
     5701 ggcaaggacg gtatagtttt gcccttcgac cagccctgcc ggggcggcgg ctgccgaagc
     5761 ggcaggcgcg ctgtcggcgg ggacgctggt ttggactttg ctgtcgcacg cggcaacgcc
     5821 gagggcgagg tgtctggatt tcatacggct ctccgtgatg ttggaaacag atgttggaaa
     5881 tcaatcggaa tccggctatt ttattgcatt tccgcgtgtt gatacagttt gccgccggaa
     5941 aaggacgttt tcgtttgggg aaaccgcttc ggacggcatc aaacccgatg ccgtctgaag
     6001 cggtttctgt cgtacaatac gcgccgtcgc cccagacgga tacggctgtt ggggaactaa
     6061 tgatgttcca acgcacagga cggcacataa agcaccgccc tatgcgttgc cctggttcgg
     6121 aagggttaca cccctttcaa atatagtgga ttaaatttaa accagtacag cgttgcctcg
     6181 ccttgccgta ctatttgtac tgtctgtggc ttcgtcgcct tgtcctgatt taaatttaat
     6241 ccactatcaa agtctgatcc tgccgcccta aagggcgggg tttcaaccga aaaggaaata
     6301 cgatgaatat gctgggagct ttggcaaaag tcggcagcct gacgatggtg tcgcgcgttt
     6361 tgggatttgt gcgcgatacg gtcattgcgc gcgcattcgg cgcgggcatg gcgacggatg
     6421 cgttttttgt cgcgttcaaa ctgcccaacc tgcttcgccg cgtgtttgcg gagggggcgt
     6481 ttgcccaagc gtttgtgccg attttggcgg aatataagga aacgcgttct aaagaggcga
     6541 cggaggcttt tatccgccat gtggcgggga tgctgtcgtt tgtgctggtc atcgttaccg
     6601 cgctgggcat acttgccgcg ccttgggtga tttatgtttc cgcacccggt tttgccaaag
     6661 atgccgacaa atttcagctc tccatcgatt tgctgcggat tacgttcccc tatatcttat
     6721 tgatttcact ttcctctttt gtcggctcgg tactcaattc ctatcataaa ttcagcattc
     6781 cggcgtttac gcccacgttc ctgaacgtgt cgtttatcgt attcgcgctg tttttcgtgc
     6841 cgtatttcga tcctcccgtt accgcgctgg cttgggcggt ttttgtcggc ggtattttgc
     6901 agctcggctt tcagctccct tggttggcga aactgggttt tttgaaattg cccaaactga
     6961 atttcaaaga tgcggcggtc aaccgcgtga tgaaacagat ggcgcctgcg attttgggcg
     7021 tgagcgtggc gcaggtttct ttggtgatca acacgatttt cgcgtcttat ctgcaatcgg
     7081 gcagcgtttc atggatgtat tacgccgacc gcatgatgga gctgcccagc ggcgtgctgg
     7141 gggcggcact cggtacgatt ttgctgccga ctttgtccaa acactcggca aaccaagata
     7201 cggaacagtt ttccgccctg ctcgactggg gtttgcgcct gtgtatgctg ctgacgctgc
     7261 cggcggcggt cggactggcg gtgttgtcgt tcccgctggt ggcgacactg tttatgtacc
     7321 gcgaatttac gctgtttgac gcgcagatga cgcagcacgc gctgattgcc tattctttcg
     7381 gcttaatcgg tttgattatg attaaagtgt tggcacccgg cttctatgcg cggcaaaaca
     7441 tcaaaacgcc cgtcaaaatc gccatcttca cgctcatctg cacgcagttg atgaaccttg
     7501 cctttatcgg cccactgaaa cacgtcggac tttcgcttgc catcggtctg ggcgcgtgca
     7561 tcaatgccgg attgttgttc ttcctgttac gcagacacgg tatttaccaa cctggcaagg
     7621 gttgggcagc gttcttagca aaaatgctgc tctcgctcgc cgtgatggga ggcggcctgt
     7681 atgccgccca aatctggctg ccgttcgact gggcacacgc cggtggaatg caaaaggccg
     7741 cccggctctt catcctgatt gccgtcggcg gcggactgta tttcgcatct ctggcggctt
     7801 tgggcttccg tccgcgccat ttcaaacggg tggaaagctg accgatgccg atatcctttt
     7861 tcggaaaacg ctttttccgc gcctatattc gggcgcgcat cccccgcgtc cgcaccagcc
     7921 ggacgggctg ccgcatcatc aatgccgtct gaaaacagaa aaaccgatac cttatgattt
     7981 tgacaccgcc ggacacaccg tttttcctcc gcaacggcaa tgccgacacg attgccgcca
     8041 aattcctgca acgccccgcg cccgcatacc gccgagagct gcttcccgac agcacgggta
     8101 aaaccaaagt cgcctacgac ttttcagacg gcatttcgcc cgatgcgccg ctggtcgtgc
     8161 tgtttcacgg tttagaagga agcagccgca gccattacgc ggtcgaactg atgctcgcgg
     8221 tacgcagccg cggttggcac ggcgcagtcg tccatttccg cagctgcggc ggcattgcca
     8281 acaccgctcc ggtgttctac cacttgggcg ataccgccga aatcgccttt actttggaca
     8341 cgcttgccgc gcgttaccgt gaaatatacg ccgtcggcgt atcgctgggc ggcaacgcgc
     8401 tggcaaaata tttgggcgaa cagggcgaaa acgcgctgcc gcaagccgcc gccgtcatct
     8461 ccgcacccgt cgatgcagag gcggcaggca accgcttcga cagcggcatc acacggctgc
     8521 tctacacgcg ctacttcctc cgcacactga tacccaaagc acggtcgctc caaggttttc
     8581 agacggcatt tgccgcaggg tgcaaaacac tgggcgagtt tgacgaccgc ttcaccgcac
     8641 cgctgcacgg ctttgccgac cggcacgact actaccgcca aacttcctgc aaaccgctgc
     8701 tcaaacacgt tgccaaaccg ctgctcctgc tcaatgccgc caacgacccc ttcctgccgc
     8761 ccgaagcgct gccgacaccg gacgaagtgt ccgaagccgt taccctgttc cagccggcac
     8821 acggtggtca tgtcggcttt gtcagcagta ccggcggcag gctgcacctg caatggctgc
     8881 cgcagaccgt cctgtcctat ttcgacagct tccgcacaaa caggcgttaa cggtttgatg
     8941 ctaatattcc ccctttcccc ggacgaatac ggaacacaat atgaccgaca tcctcaataa
     9001 aatccttacc gccaaggcac aggaagttgc cgcccaaaaa gccgccgttc ccctcgaaca
     9061 catccgcgca cttgccgcag aagccgcgcc cgtccgaagc ttcatcggtt cgatacgcgg
     9121 caaacaccgc ctaaacctgc ccgccgtcat tgccgaaatc aaaaaggcaa gcccgagcaa
     9181 aggcctgatc cgtccggact tccgaccggc cgagattgca cgcgcctatg aaaacgccgg
     9241 agcggcgtgt ttgtccgtac tgaccgacga accctatttc caaggttcgc ccgaatacct
     9301 caaacaggcg cgcgaagccg tatctctgcc cgttttgcgt aaagacttca tcatcgacga
     9361 ataccaggtt tatcaggcgc gcgcctgggg ggcggatgcc gtcctgctga ttgccgccgc
     9421 actggaacgg gaacaattgg aacgctttga agcggtggcg cacgaattgg gcatgaccgt
     9481 cctgctcgag ctgcacgatg aaagcgaatt ggaaaaatgc cgcaacctga ccacgccgtt
     9541 gtggggtgta aacaaccgca acctgaggac ttttgaagtc tccctcgacc aaaccctgtc
     9601 gctgctgccc gcactggaag gcaaaaccgt cgttaccgaa agcggcatta cgggtaaggc
     9661 ggatgtggaa tttatgcggg cgcgcggcgt gcataccttc ctgatcggcg aaacgttcat
     9721 gcgtgccgac gatattgaga cggaagtggg caaactcttc taaatcccga tttcagacgg
     9781 catattgccg ccgaccgacc aacaccctta ccaagcacgg aaccatcatg caccgaccga
     9841 ccgccaaaca gattttgcac gaagtattcg gttatcccga atttcgcggc aggcaggagg
     9901 ctgtcatcaa tactttggca ggcggcagga gtttgatggt gctgatgccg acgggcgggg
     9961 gcaagtcttt gtgttaccag attcccgcgc tgatgcgcga aggcgtggcg gttgtcgtat
    10021 cgccgctgat tgcgctgatg aacgaccaag tggccagcct gcatgtggcc gggattgaag
    10081 cagcggcagt caacagcggc acatcggcag atgaggcgcg cgagattgcc gacaagcttg
    10141 cccaaggccg tctgaaactg ctttatgtcg caccggaacg cttggttacc gaccgctttt
    10201 tgcgttttct cgaccaacaa accgtcagtc tgtttgccat tgacgaggcg cattgtgtca
    10261 gccagtgggg gcacgatttc cgccccgaat accaacagct cggcatcctt gccgaacgct
    10321 atccgaacgt cccgcgcatc gccctgaccg ctaccgccga tgccgccacg cgcgccgaca
    10381 tcaagcatta tctgcacttg gacaatgcgc ccgaatttgt ctccagcttc gaccgtccga
    10441 atatttatta tcaggttatc gaaaaaaaca acggcaaaaa acaattgctg gatttcatcc
    10501 gcaaagaaat gacggggcaa agcggcattg tgtattgcct aagccgcaaa aaggttgaag
    10561 atgtggcgca gtttttgcgt gaaaacggat taaacgcgat tccgtatcat gctggtttga
    10621 gcatggacgt gcgcgaggaa aaccaacgcc gctttacgca tgaagacaat attatcgtgg
    10681 tggcgaccgt ggcgttcggc atgggcatag acaaacccga cgtgcgcttt gtcgcccatc
    10741 tcgatatgcc ccagagtgtc gaacatttct atcaggaatc ggggcgtgcc ggcagggacg
    10801 ggctgcctgc cgcgagctgg ctgtgttacg gtttgaacga ttgggtgttg ctgcgcgaac
    10861 ggattgccga aggcaacagc gacgaggtgc aaaagcaaat cgaaatgcaa aaactcgatg
    10921 ccatgctttc cgtctgcgaa accgccgcct gccgccgcgt actgctgctc aaacatttcg
    10981 gcgaagaatc cgaaccctgc ggccattgcg acaactgcct gcatccgccc gtacggtttg
    11041 acggcacggt gttggtgcaa aaattactca gctgcgtgta ccgcgccgga caacgttttg
    11101 ccgccggtta catcaccaac cttttgcgcg gcaaaagcga cgattggata cgcggcaacc
    11161 ggcacgaaca actgtccacc ttcggcatcg gtacggagtt gtccgacaaa gaatggcgca
    11221 gcgtcatccg ccagtgtatc agcctcggct atctcaccgt caacattacc cgatatcagg
    11281 cattgcaact gaccgaagcc gccaaaaaag tcctcaaagg cgaaaccgaa gtgatgctgc
    11341 gtccgctcaa gcgcgacaag cccgccgccc gcaccctcaa agacaactgg ctgcgtaccg
    11401 aacgcgaaga acgcctgtgg caggcattgc gcgtttggcg tatgaaacag gcagaagccg
    11461 aaggcatccc cgcctatatg attttcggcg acaaaaccct gcgcgacctt gtcgaaaaaa
    11521 tgccgcaaaa cctcaacggg ctgcacgaca tctacggctt gggcgaagcc aaaatcgacc
    11581 gtttcggaca cggcatactc aaagtctgcc aaaacgctgc cgactttagc cacgatgccg
    11641 tcatccgtcc gcaaaccgaa cgcgaacagc aactgcgtca aaaactcgaa gcctggcggt
    11701 atgaacaggc aagggcggaa aactgcgccc tgcatgccgt cctctccgac gaaagccttg
    11761 ccgatatgct tgccgccacg cctgaaaccg aaaccgacct cgaaggcgta cacggcttgg
    11821 gcagcgtacg cgccgccaaa tacggacggg acatcctcgc cgtctgccgt ccgttttcag
    11881 acggcatcga tgaagccgcc aaacgcaaac gccgcctgat gcgcgccctg atccaatggt
    11941 gcggcgaaac ggcaaaacac gaacagtccg aaccctaccg cattctcagc aaagccgccc
    12001 tgcgcgccat tgccgccaaa cagccggaag gtttggcgga gcttgccgcc gtatatggcg
    12061 taggcgaaga aaaagccgca cgttacggtg cggcggtgtt gacggtgttg ggacaaaatg
    12121 ccgtctgaag cccgttacca agtttcagac ggcattgcct ctatttaaaa attcctg
//
LOCUS       DAWGNT010000045        12085 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.045, whole genome shotgun sequence.
ACCESSION   DAWGNT010000045 DAWGNT010000000
VERSION     DAWGNT010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12085
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.045"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(41..970)
                     /locus_tag="WHR98_000897"
     CDS             complement(41..970)
                     /locus_tag="WHR98_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEZ2307595.1"
                     /translation="MDSIIELRHLKTLLALEETGSVSLAAKRVFLTQSALSHQIRMLE
                     NHYGAPLFERKSTPLRFTPVGERLLRLAHELIPQVAVAERDLARITEGEAGELRIAVE
                     CHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQSGIS
                     FQPLFAYEMVGICAKDHPLAAKTVWEAEDFIGETLITYPVPDEMLDLPKKILIPKNIN
                     PPRRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIR
                     TEDTDKSYLNNFCQIIRERGFADLPGLSELEPV"
     gene            1101..1850
                     /locus_tag="WHR98_000898"
     CDS             1101..1850
                     /locus_tag="WHR98_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEZ2307596.1"
                     /translation="MVLRRDFLTWCNETLQTALFKDYAPNGLQVEGREYIGKIVTSVT
                     ASRAAIDFAVEQKADLLLVHHGMFWKNELPTVTGWKKERIAALLRHDINMAGYHLPLD
                     AHPTLGNNAQLADRLGFATEKRFGEQNLLNSGSLKQAKTLGALAAHIETVLQRKPVVI
                     GKPEREIRRVAWCSGGAQGFFQTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHH
                     ATERYGVRALAESAAEVFGLEVCHFDENNPA"
     gene            1973..2554
                     /gene="petA"
                     /locus_tag="WHR98_000899"
     CDS             1973..2554
                     /gene="petA"
                     /locus_tag="WHR98_000899"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEZ2307597.1"
                     /translation="MDNQEINNGRRRFLTLATCGAGGVAALGVATPFVASFFPSEKAK
                     AAGAAVEVDVSKIEAGQLLTAEWQGKPIWVLNRTDQQLKDLKGLNGELTDPNSDAEQQ
                     PEYAKNETRSIKPNILVAIGICTHLGCSPTFRPDIAPADLGADWKGGFFCPCHGSKFD
                     LAGRVYKGVPAPTNLVVPPYKYLSDTTILVGED"
     gene            2573..3922
                     /locus_tag="WHR98_000900"
     CDS             2573..3922
                     /locus_tag="WHR98_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEZ2307598.1"
                     /translation="MANQTNSKAKALLGWMDARFPLSKMWNEHLAQYYAPKNFNFWYY
                     FGSLALLVLVIQIVSGIFLTMNYKPDGNLNAYHLPAAFTAVEYIMRDVSGGWIIRYMH
                     STGASFFFIVVYLHMFRGLIYGSYKKPRELVWIFGSLIFLALMAEAFMGYLLPWGQMS
                     FWGAQVIINLFSAIPVIGPDLSTWIRGDFNVSDVTLNRFFALHVIAVPLVLLGLVVAH
                     IIALHEVGSNNPDGVEIKKNKDENGIPRDGIPFHPYYTVKDILGVVVFLIVFCAVLFF
                     APEGGGYFLEAPNFDAANALKTPPHIAPVWYFTPFYAILRAIPSFLGTQVWGVIGMGA
                     AVVLIALLPWLDRGEVKSVRYRGPIFKTALVLFIISFIGLGILGAMVATDTRTLVARI
                     LSFVYFAFFLGMPFYTKLDKNKPVPERVTMSTAKQKIMFFVYVGITAVGAYLFATNI"
     gene            3937..4725
                     /locus_tag="WHR98_000901"
     CDS             3937..4725
                     /locus_tag="WHR98_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HEZ2307599.1"
                     /translation="MKQAMKNWFAALLLAVPMGAAFASGGHAHYEKVDIDLRDQVSLQ
                     RGAQIFTNYCLSCHSASGMRFNRLKDIGLTDEEIKKNLMFTTDNVGDVMHSAMNPKDA
                     AKWFGAAPPDLTLIARSKGADYLYAYMRGFYKDPTRPSGWNNTVFDKVGMPHPLWEQQ
                     GVQAVELDAKGQPVMVKDEHGEMKPKLYWESTGLHSRRLPNGKVIQKEYDAYVRDLVN
                     YLVYMGEPAQLQRKRIGYVVMIFLFAVMLPLAYFLKKEYWKDVH"
     gene            5064..6848
                     /gene="rmuC"
                     /locus_tag="WHR98_000902"
     CDS             5064..6848
                     /gene="rmuC"
                     /locus_tag="WHR98_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEZ2307600.1"
                     /translation="MELMTVLLPLAALVSGVLFTWLLMKGRFQGEFADLNAQLAEKAA
                     RCDFVEQAHGKTVSELAVLDGKYRHLQDENYALGNRFSAAEKQIAHLQEKEAESARLK
                     QSYIELQEKAQGLAVENERLATQLGQERKAFADQYALERQIRQRVETDLEESRQTVRD
                     VQNDLSDVGNRFAAAEKQIAHLQEKEAEAERLRQSHIDLQEKAQGLAVENERLATQIE
                     QERLASEEKLSLLGEARKSLSDQFQNLANTILEEKSRRFTEQNREQLHQVLNPLNERI
                     HGFGELVKQTYDKESRERLTLENELKRLQGLNAQLHSEAKALTNALTGTQNKVQGNWG
                     EMILETVLENSGLQKGREYVVQAASVRKEEDGGTRRLQPDVLVNLPDNKQIVIDSKVS
                     LTAYVRYTQAADADTAARELAAHVASIRAHMKGLSLKDYTDLEGVNTLDFVFMFIPVE
                     PAYLLALQHDAGLFQECFDKRIMLVGPSTLLATLRTVANIWRNEQQNQNALAIADEGG
                     KLYDKFVGFVQTLESVGKGIDQAQNSFQTAFKQLAEGRGNLVGRAEKLRLLGVKAGKQ
                     LQRDLVERSNETTALSESLEYAAEDEAV"
     gene            complement(7054..7686)
                     /locus_tag="WHR98_000903"
     CDS             complement(7054..7686)
                     /locus_tag="WHR98_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEZ2307601.1"
                     /translation="MTLRYEIFPVTPFRQNCTLIWDDESGEAVLTDVGGDVPFLLQAL
                     ANRKLTLTAIWLTHGHLDHAGGVVEMLKTHKVPVLGSHREDEFLLQSLPQTTAQYGFP
                     VSPAFAPNRWLEEGETLKVGRYAFQVLHIPGHTPGHVVFYCAEAELLIAGDVLFYETI
                     GRTDFPRGNHADLINNIRNKLFALPETVQVVAGHGRMTSIGHEKRHNPFF"
     gene            7778..8602
                     /locus_tag="WHR98_000904"
     CDS             7778..8602
                     /locus_tag="WHR98_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEZ2307602.1"
                     /translation="MIKKTIGGIIPIFTAVFIPASAGAADLMLAQEYKGQDIAGWAMS
                     EKLDGVRAYWDGKHLISRQGYAFTPPKGFTAQFPPYPLDGELYSGRGQFEQISATVRS
                     VSSDWRGIRLHVFDVPKAQGNLYQRLAVATQWLKTHPNAPITIIPQTKVRDRQHTMDF
                     LKQIEAQGGEGVMLRQPESRYSGGRSSQLLKLKSQYDDECTVTRHYEGKGRNAGRLGA
                     IGCKNRHGEFRIGSGFKDKDRDNPPKIGTLITYRYRGFTRKGTPKFATFVRVRTDR"
     gene            8671..9234
                     /locus_tag="WHR98_000905"
     CDS             8671..9234
                     /locus_tag="WHR98_000905"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="HEZ2307603.1"
                     /translation="MTDLETKRLETQAMLENADLLFDQGQCRAALQKVADEITRDLGG
                     KYPLLLPVMGGAVVFTGQLLPLLRFPLDFDYVHVSRYGDKLEGGAFNWKRMPDAEQIR
                     GRHVVVLDDILDEGHTMSAIQAKLLEMGAASCRAAVFANKLIDKPKPIRADYVGLDVP
                     NRYVFGYGMDAAGCWRNLGEIYALDGK"
     gene            9316..9753
                     /locus_tag="WHR98_000906"
     CDS             9316..9753
                     /locus_tag="WHR98_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEZ2307604.1"
                     /translation="MIGLLIITHETIGEAYRKLAHHFFPGGLPENVRILGVQPTEDQD
                     DIINNAIAALQEFPDNDGVLIMTDIFGATPCNAARRLVRENKSAILTGLNAPMMVKAV
                     QYSPAAEDLAAFTECVREAAVKGIFAITSAPEDLVCRRSGDAV"
     gene            9822..10091
                     /locus_tag="WHR98_000907"
     CDS             9822..10091
                     /locus_tag="WHR98_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HEZ2307605.1"
                     /translation="MLKQSIEIINKLGLHARASSKFTQTASQFQSEVWVTKNGSRVNG
                     KSIMGLMMLAAAKGTVIELETDGADEAEAMRALSDLINDYFGEGE"
     gene            10091..11866
                     /gene="ptsP"
                     /locus_tag="WHR98_000908"
     CDS             10091..11866
                     /gene="ptsP"
                     /locus_tag="WHR98_000908"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HEZ2307606.1"
                     /translation="MSIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAE
                     RFDAAVKATRKELEQLRSAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKIN
                     AEWALKQQSDKLAAQFDNMDDAYLRERKQDMLQVVRRIHNNLIGQGNELEVADNLFDE
                     TVLIANDLSPADTVLFKEQRIAAFVTDAGGPTGHTAILGRSLDIPSVVGLHNARKLIT
                     EGETVIVDGINGVLIIAPDESVLNEYRRRAREYRSHKRDLNKLKKTAAATADGVCIEL
                     VGNIESAEDVKPLHNLGADGIGLFRSEFLYLNRDTMPSEDEQYEVYNAIVKKMKGKSV
                     TIRTVDLGVDKNPRWFGKNSTPNGSLNPALGMTGIRLCLAEPVMFRTQMRAILRAAVH
                     GPVRMMWPMITSVSEVRQCLIHLDTAQRQLAERGDAFGKVGIGCMIEIPSAALTVGSI
                     LKLVDFISVGTNDLIQYILSVDRGDDSVSHLYQPGHPAVLKMLQHVIRTANRMDKDVS
                     VCGEMAGDTAFTRILLGMGLRRFSMNPNNILPVKNIILHSNIAQLENEIAKIVRCEDE
                     EKAEKLIKQMNSVSVEEEADFKGRK"
BASE COUNT         2926 a         3053 c         3406 g         2700 t
ORIGIN      
        1 gaaaaaatag aaaaactgcc gggtatggtt gaataagggg tcagaccggt tccagttcgc
       61 tcagtccggg caaatctgca aaaccgcgtt cgcgtatgat ttggcaaaaa ttgttcagat
      121 agctcttgtc cgtatcttcg gtacggatgg cggcatacag tttgctttgc agtccgtcgg
      181 cagtaatttg gcggtggacg acatagcctt tttcaaggta gggcatgact gtccaatagg
      241 gaagggcggc aatgccacgt ctgctggcaa ccagttggat aatggcgatg gtcagttcgc
      301 tgtgtcggcg cggcgggttg atgtttttcg gaatcaggat ttttttgggc aaatccagca
      361 tctcgtcggg aacgggataa gtaatcaggg tttccccgat aaagtcttcg gcttcccaga
      421 cagttttggc ggcaagcggg tgatctttgg cgcagatgcc gaccatttcg taggcaaaca
      481 gtggttggaa gctgatgccg ctttgttttt ccgcttcgga aacaatggca aggtcggcgc
      541 ggtgttgcag cagcagcccg acgggatccg cttggaatcc cgatacgata tccagttcga
      601 cttggggcca catcgggcgg aattcgccca tggcgggcat cagccagtcg aaacaggtat
      661 ggcattcgac ggcaatccgc agctctcccg cctccccttc cgtgattcgc gccaaatctc
      721 gttctgcaac agcaacttga ggtatcagtt cgtgggcgag gcgcagcagc ctttcgccca
      781 ccggggtaaa gcgcaagggc gtggattttc gttcgaacaa cggtgcgccg tagtggtttt
      841 caagcatacg gatttggtgg gaaagtgcag attgggtaag gaaaacccgt ttggcggcaa
      901 gggagacgct gccggtttct tcaagtgcca gcagggtctt gaggtggcgc agttcgatga
      961 tggaatccat ggggcttcag acggcatatt gaaccggcgc atattaaaat aattcatatg
     1021 cgggtgcaaa tcggaaaaat gtgaattccg gacattttgc gattagaatg cccgcttgtt
     1081 taaagcgatt aggaaaaaag atggtattgc gcagggattt tctgacttgg tgtaatgaaa
     1141 cattgcagac agcgttgttt aaagattacg cccctaacgg tttgcaggtt gaagggaggg
     1201 aatatatcgg gaaaatcgtt acgtcggtaa cggcaagcag ggcagcgatt gattttgctg
     1261 tggagcagaa ggcagatttg cttttggtac atcacggtat gttctggaaa aacgagttgc
     1321 cgaccgttac tggttggaaa aaagaacgga ttgccgcact gttacggcac gacatcaata
     1381 tggcaggcta ccatctgccc ctggatgcac atcccacact gggcaacaat gcccaactcg
     1441 ccgacagatt gggttttgcg acagaaaaac ggttcggcga acaaaacctg ctcaactcgg
     1501 gcagcctgaa acaagccaag acactcggcg cattggcggc gcatattgaa acagttttgc
     1561 aacgtaagcc tgtcgtcatc ggcaaacccg aacgcgaaat ccgacgggtt gcatggtgta
     1621 gcggcggggc gcaggggttt tttcagacgg caatagacga aggtgtcgat ctgtatttga
     1681 cgggggaaat ctctgaagct caataccacc ttgccaatga aacgggtacg gctttcattt
     1741 cggcagggca tcacgcgacg gaacgttacg gcgtacgcgc gctggcagaa tcggcggcag
     1801 aggttttcgg gttggaagtg tgccattttg acgaaaacaa tccggcttga gtcttgagaa
     1861 atatcataaa actttacctt attttaaata atgctttgag tatcactgca aactgggtaa
     1921 aattgcaacg tttaatggct cggtattccc aaaatattag gacgactgaa taatggataa
     1981 tcaagaaatc aacaacggcc gccgccgttt cctgacactc gcgacctgcg gcgcgggcgg
     2041 agtggcagca ttgggtgtgg caacgccgtt tgtggccagt tttttccctt cggaaaaagc
     2101 caaggccgcc ggtgctgccg tcgaggtgga tgtcagtaaa atcgaagcgg gtcagctgct
     2161 gaccgccgag tggcaaggca aaccgatttg ggtgctcaac cgtacagatc agcagcttaa
     2221 agacctgaaa ggcctgaacg gcgaacttac cgatcccaat tccgatgcgg aacagcagcc
     2281 ggagtatgct aaaaacgaga cccgttcgat taagccgaac atccttgtcg ccatcggtat
     2341 ctgcacccat ttgggctgct cgcccacctt ccgtcccgac attgcccccg ccgatttggg
     2401 tgcagactgg aaaggcggct tcttctgccc ctgccacggt tcgaaattcg acttggccgg
     2461 ccgcgtatat aaaggtgttc ctgccccgac caacctggtt gtcccgccat ataaatactt
     2521 gagcgacaca actatcttgg tgggcgaaga ctaagaataa ggaacgataa ttatggcaaa
     2581 ccaaaccaat agcaaagcaa aagcattgtt aggctggatg gacgctcgtt tccccctgtc
     2641 taaaatgtgg aatgagcatt tggctcaata ctacgcaccg aaaaacttta atttttggta
     2701 ctacttcggc tctttggccc tgcttgtcct cgtgattcaa atcgtcagcg gcattttcct
     2761 gaccatgaac tacaaacccg acggcaacct gaacgcctac catctgcctg ctgcctttac
     2821 tgcagtcgag tacatcatgc gcgacgtgtc cggcggttgg attatccgct acatgcattc
     2881 caccggcgca tctttcttct tcattgttgt ttatctgcac atgttccgtg gtttgattta
     2941 cggttcgtac aaaaaacccc gtgagttggt gtggattttc ggttctctga ttttcttggc
     3001 attgatggcg gaagccttta tgggctacct gctgccttgg ggtcagatgt ccttttgggg
     3061 ggcgcaggta attattaacc tgttctccgc catccctgtt atcggtccgg atttgtccac
     3121 ttggattcgc ggcgacttca acgtttccga cgttaccctg aaccgtttct ttgccctgca
     3181 cgttatcgcg gtacctctgg tattgctcgg cttggttgtg gcgcacatca tcgccctgca
     3241 cgaagtgggt tctaacaacc ctgacggcgt tgaaatcaag aaaaacaaag acgaaaacgg
     3301 tatcccgcgc gacggtatcc cattccatcc ttactatacc gttaaagaca tcttgggtgt
     3361 ggttgtattc ctgattgtct tctgtgccgt attgttcttc gcaccggaag gcggcggcta
     3421 cttcctcgaa gcgccgaact tcgatgcggc aaatgcgctg aaaacacccc cgcacattgc
     3481 gccggtatgg tatttcacac cgttctacgc cattttgcgt gcgattccct cgttcttggg
     3541 aacgcaggtt tggggtgtaa tcggtatggg cgcggcggtc gtgttgattg ccctgctgcc
     3601 ttggctggat aggggcgagg tgaaatccgt ccgttaccgc ggtccgattt tcaaaaccgc
     3661 attggtcttg ttcatcattt cctttatcgg tttgggtatt ttgggcgcga tggtggcaac
     3721 cgatacgcgt actttggtcg cgcgcatcct gtccttcgtc tatttcgcat tcttcctggg
     3781 tatgccgttc tataccaagc tggataaaaa caaaccggtt cccgaacgcg taaccatgag
     3841 caccgccaaa caaaaaatca tgttctttgt ttacgtcggc attaccgccg tgggtgctta
     3901 cctgtttgca accaacatct gatgagggca gtcaaaatga aacaagctat gaaaaattgg
     3961 tttgctgcct tgctgttggc agtacccatg ggtgcggcat ttgcttcggg cggtcatgca
     4021 cactatgaga aagtcgatat cgatttgcgc gaccaagtca gcctgcagcg cggcgcacaa
     4081 atctttacca actattgcct gtcctgccac tcggcaagcg gtatgcgttt caaccgtttg
     4141 aaagacatcg gtttgactga cgaagaaatc aagaaaaacc tgatgtttac caccgataat
     4201 gtcggcgatg tcatgcattc ggcgatgaac ccgaaagatg cggcaaaatg gtttggtgct
     4261 gctccgcccg atttgacatt gattgcgcgt tccaaaggtg cagactacct ttacgcttat
     4321 atgcgcggct tctataaaga tccgacccgt ccgagcggct ggaacaatac tgtattcgat
     4381 aaagtcggta tgccccaccc gttgtgggaa cagcaaggcg ttcaagccgt tgagttggat
     4441 gccaaaggtc agccggttat ggtaaaagac gaacacggcg agatgaagcc taagctgtat
     4501 tgggaatcta ccggtttgca cagccgccgt ctgcctaacg gcaaagtgat ccaaaaagag
     4561 tacgacgcat atgtacgcga tttggtcaat taccttgtgt acatgggcga acctgcacaa
     4621 ctgcaacgca aacgtatagg ctatgtcgtg atgattttcc tatttgcggt tatgctgcct
     4681 ttggcgtatt tcctgaaaaa agaatattgg aaagacgtac actaagcgtt tggaacaaaa
     4741 gggcaaatcc tttagggttt gccctttttt cattttgcct gccgtttgaa aagcctaaat
     4801 ccgtatgccg tctgaacata gctgcaacat ttcagacggc atcattctaa aaatgtcaga
     4861 catcgggaac ttaatcaggg tttgtggcag attgatattg aattaggaaa aggtctgaaa
     4921 ccgcaagcag catggtaagg cgatgtcgaa caggtttaaa gccaatccgc tatatttttt
     4981 ggagctatgt cgaacaaaca ggtagaatcg gaataagcgg cggttttgtc cggtgtgaaa
     5041 atgtttgaat attaggatga ttgatggaac tgatgactgt tttgctgcct ttggcggcgt
     5101 tggtgtcggg cgtgttgttt acatggttgc tgatgaaggg caggtttcag ggcgagtttg
     5161 ccgatttgaa cgcgcaactg gcggaaaagg cggcaagatg tgattttgtc gaacaggcac
     5221 acggcaaaac cgtgtcggaa ttggcggtgt tggacgggaa ataccggcat ttgcaggacg
     5281 aaaattatgc tttgggcaac cgtttttccg cagccgaaaa gcagattgcc catttgcagg
     5341 aaaaagaggc ggagtcggcg cggctgaagc agtcgtatat cgagttgcag gaaaaggcac
     5401 agggtttggc ggttgaaaac gaacgtttgg caacgcagct cggacaggaa cggaaggcgt
     5461 ttgccgacca atatgcgctg gaacgccaaa tccgccaaag agtcgaaacc gatttggaag
     5521 agagccgcca aactgtccgc gacgtgcaaa acgacctttc cgatgtgggc aaccgttttg
     5581 ccgcagccga aaaacagatt gcccatttgc aggaaaaaga ggcagaagcg gagcggttga
     5641 ggcagtcgca tatcgatttg caggaaaagg cacagggttt ggcggttgaa aacgaacgtt
     5701 tggcaacgca aatcgaacag gaacgccttg cttctgaaga gaagctgtcc ttgctgggcg
     5761 aggcgcgcaa aagtttgagc gatcagtttc aaaatcttgc caacacgatt ttggaagaaa
     5821 aaagccgccg ttttaccgag cagaaccgcg agcagctcca tcaggttttg aacccgctaa
     5881 acgaacgcat ccacggtttc ggcgagttgg tcaagcaaac ctatgataaa gaatcgcgcg
     5941 agcggctgac gttggaaaac gaattgaaac ggcttcaagg attgaatgcg cagctgcaca
     6001 gcgaggcaaa ggccctgacc aacgcgctga ctggtacgca gaataaggtt cagggtaatt
     6061 ggggcgagat gattctggaa acggttttgg aaaattccgg ccttcagaaa gggcgggaat
     6121 atgtggttca ggcggcatcc gtccgaaaag aggaagacgg cggcacgcgc cgcctccagc
     6181 ccgacgtttt ggtcaacctg cccgacaaca agcagattgt gattgactcc aaggtctcgc
     6241 tgacagctta tgtgcgctac acgcaggcgg cggatgcgga tacggcggca cgcgaactgg
     6301 cggcacacgt tgccagcatc cgtgcacaca tgaaaggctt gtcgctgaag gattacaccg
     6361 atttggaagg tgtgaacaca ttggatttcg tctttatgtt tatccctgtc gaaccggcct
     6421 acctgctggc gttgcagcat gacgcgggat tgttccaaga gtgtttcgac aaacggatta
     6481 tgctggtcgg ccccagtacg ctgctggcga ctttgaggac ggtggcgaat atttggcgca
     6541 acgagcagca aaaccaaaac gcgctggcga ttgcggacga aggcggcaag ctgtacgaca
     6601 aatttgtcgg ctttgtacag acgctcgaaa gcgtcggcaa aggcatcgat caggcgcaaa
     6661 acagctttca gacggcattc aagcaacttg ccgaagggcg cgggaatctg gtcggacgcg
     6721 ccgagaaact gcgtctgttg ggcgtgaagg caggcaaaca acttcaacgg gatttggtcg
     6781 agcgttccaa tgaaacaacg gcgttgtcgg aatctttgga atacgcggca gaagatgaag
     6841 cagtctgact tgtgcggaaa agcttgtttc agcaggggcg ggaatgccga aagcgcggcg
     6901 taactgtacc ggttctgatt tggggttggt ttgaagtact taccaaagcc ttgtccggcg
     6961 aggtacaccg gcaaggcggc ggttgtctga gccttttgcg tttcagacgg catcagtgca
     7021 gatgacgccg tctgaagacc gtagtgaagt cggttagaaa aacggattgt gccgtttttc
     7081 gtgtccgatg gaagtcatac gcccgtgtcc ggcgacaact tgcacggttt cggggagggc
     7141 gaataatttg ttgcggatat tattgattaa gtcggcgtgg ttgccgcgcg gaaaatcggt
     7201 tctgcctatg gtttcgtaaa acagcacgtc gcccgcaatc agcagctccg cttcggcaca
     7261 atagaaaacc acgtgtcccg gcgtgtgccc cggaatatgc agcacttgaa aggcatagcg
     7321 tccgactttg agcgtttcgc cttcttcgag ccaacggttc ggcgcaaagg cgggcgagac
     7381 gggaaatccg tattgcgcgg tggtttgcgg cagcgattgg agcaggaatt catcttcgcg
     7441 gtgcgaaccg aggacaggga ctttatgcgt tttcaacatt tcgaccacgc cgcccgcgtg
     7501 atcgagatgg ccgtgcgtca gccagattgc cgtgagcgta agtttgcggt ttgccaacgc
     7561 ttgcagcagg aacggcacgt cgccgccgac atcggtcagg acggcttcgc cgctttcgtc
     7621 gtcccaaatc agggtgcagt tttggcggaa gggggtaacg gggaagattt cgtaacgtag
     7681 ggtcatcggc gtgttcctaa acggtttttc agacggcatc gggtttgccg tttgttttat
     7741 ggcggtttgc cgcctgtttt gatatttggg gaatcagatg attaagaaga caatcggcgg
     7801 catcataccg atttttacgg cggttttcat ccctgcatcg gcaggcgcgg cggatttgat
     7861 gctggcgcag gaatacaaag ggcaggatat tgccggctgg gcaatgagcg agaaactcga
     7921 cggcgtgcgc gcctattggg acggaaagca cctgataagc cgtcagggct acgcgtttac
     7981 gccccccaaa ggctttaccg cgcagtttcc gccttatcct ttggacggcg aattgtatag
     8041 cggacgtggt cagttcgagc agatttccgc taccgtgcgt tctgtttctt cagactggcg
     8101 cggcatccgc ctgcacgttt tcgatgtacc caaggcgcag ggcaatctct accaacgttt
     8161 ggcagtcgca acgcagtggc tgaaaacgca tccgaacgcg ccgattacca tcatcccgca
     8221 aaccaaagtg cgcgaccggc agcacacgat ggacttttta aaacaaatcg aagcgcaggg
     8281 cggcgaaggc gtgatgctgc gtcagcccga atcccgttac agcggcggca ggagcagcca
     8341 attattgaag ctgaaaagcc aatacgacga cgaatgcacg gtaacgcggc actatgaggg
     8401 caaagggcga aacgccggac ggttgggcgc gatcggctgc aaaaaccggc acggcgaatt
     8461 ccgcatcggc agcggtttca aagacaaaga ccgcgacaac ccgcccaaaa tcggcacact
     8521 gattacctac cgctaccgtg gttttacgcg gaaaggcacg ccgaaatttg ccacatttgt
     8581 gcgcgtgcgt accgaccgct gagcaggacg gttcagacgg catccgatac tttggtttat
     8641 aattttcctt ttaccgaccg attccgacat atgaccgatt tagaaaccaa acgccttgaa
     8701 acacaggcga tgcttgaaaa cgccgatctt ttgttcgacc aaggccaatg ccgtgccgca
     8761 ctgcaaaaag tggcggacga gattacgcgc gatttgggcg gcaaatatcc gctgctgctg
     8821 cccgtgatgg gcggcgcggt ggtgtttacg gggcagttgc tgccgctgtt gcgttttccc
     8881 ttagattttg attatgttca cgtttcccgt tacggcgaca agctggaggg cggcgcgttc
     8941 aactggaagc gtatgcccga tgcggaacaa atccggggca ggcacgtcgt cgtgctggac
     9001 gatattttgg acgaagggca tacgatgtcc gccattcaag ccaaactttt ggaaatgggt
     9061 gcggcaagct gccgtgcggc ggtgttcgcc aacaagctga tcgacaaacc caagcctatc
     9121 cgagccgatt atgtcggact ggatgtgccg aaccgttatg ttttcggtta cggcatggat
     9181 gcggcgggct gctggcgcaa tctgggcgag atttacgcat tggacggaaa ataaggacgc
     9241 gatgccgtct gaatgccttt cagacggcat cgcgcccata cgccggcagg ataatgaaga
     9301 acaggacgca tcaatatgat agggctttta atcatcacac acgaaaccat aggcgaagcc
     9361 taccgcaagc tggcacatca ttttttcccg ggcgggctgc ctgaaaacgt ccgcatactc
     9421 ggcgtgcagc cgacggaaga ccaagacgac atcatcaaca acgccattgc cgcgcttcag
     9481 gagtttcccg acaacgacgg cgtgctgatt atgaccgata ttttcggcgc gaccccctgc
     9541 aatgccgccc gccgcctcgt gcgcgaaaac aaatcggcga ttttgaccgg gctgaacgcg
     9601 ccgatgatgg ttaaggccgt ccaatattcg ccggcggcgg aagaccttgc cgcctttacc
     9661 gaatgcgtca gggaggcggc tgtaaaaggc attttcgcca tcacgtccgc gcccgaagat
     9721 ttggtgtgcc ggcgcagcgg cgatgccgtc tgaagaagcg gcagggcagg aaaacatttt
     9781 aaacggcgtc tgctgccgat atacataaca cgggaatcga aatgctcaaa caatccatcg
     9841 aaatcatcaa caaactcgga cttcacgccc gtgcctccag caaattcacc caaaccgcgt
     9901 ctcagtttca aagcgaagtc tgggtaacga aaaacggcag ccgcgtcaac ggcaaaagca
     9961 tcatggggct gatgatgctc gccgccgcca agggtacggt catcgagctg gagacggacg
    10021 gcgcggacga ggcggaagcg atgcgcgccc tgtccgactt aatcaacgac tacttcggcg
    10081 agggcgaata atgagtatcg tgctgcacgg cgtggcggcg ggtaaaggta ttgccgtcgg
    10141 ttgcgcccac ctgattgcgc gcggtacgga ggaagtgccg cagtatgatg ttgcggaggc
    10201 ggacaccgat gccgaagccg aacgtttcga tgccgccgtc aaagccacgc gcaaagagtt
    10261 ggaacagctc cgcagcgcga ttcccgaaaa cgccccgacc gagttgggcg cgttcatctc
    10321 gctgcacctg atgctcttga ccgatgttac cttgtcgcgc gaacccgtcg atattttaag
    10381 ggaacaaaaa atcaacgccg agtgggcatt gaagcagcag agcgacaaac tcgccgccca
    10441 attcgacaat atggacgatg cctatttgcg cgaacgcaag caggatatgc tgcaagtcgt
    10501 ccgccgcatc cacaacaacc tgatcgggca gggcaacgag ttggaagttg ccgacaacct
    10561 gtttgacgaa accgttctga ttgcaaacga cctttcgccc gccgacacgg ttttgtttaa
    10621 agagcagcgc attgccgcct tcgttaccga tgccggcggc cccaccgggc atacggcgat
    10681 tttgggcagg agcttggaca tcccgtccgt cgtcgggctg cacaacgcgc gcaaactgat
    10741 taccgaaggc gaaacggtca ttgtggacgg tatcaacggc gtgttgatta tcgcgccgga
    10801 tgagtcggtg ttgaacgaat accgccgccg tgcccgcgaa taccgcagcc acaaacgcga
    10861 tttgaacaag ctcaaaaaaa ccgccgccgc caccgccgac ggggtctgca tcgagcttgt
    10921 gggcaatata gaatccgccg aagacgtgaa accgctgcac aacctcggcg cagacggcat
    10981 cgggctgttc cgcagcgagt ttctttacct caaccgcgat acgatgccgt ctgaagacga
    11041 gcagtacgaa gtgtacaacg cgattgtcaa aaaaatgaag ggcaaaagcg taacgatacg
    11101 gacagtcgat ttgggagtgg acaaaaaccc gcgctggttc gggaaaaaca gcacgcccaa
    11161 cggcagcctc aaccccgcgc tgggcatgac cggcatccgc ctgtgccttg ccgaaccggt
    11221 catgttccgc acccagatgc gcgccatcct ccgtgcggcg gtacacggtc ccgtccgcat
    11281 gatgtggccg atgattacct ccgtatccga agtgcgccag tgcctcatcc acctcgacac
    11341 cgcgcaacgc cagcttgccg aacgcggcga tgccttcggt aaagtcggca tcggctgtat
    11401 gattgaaatt ccgtctgccg cgctgaccgt cggcagtatt ttgaaactgg tcgatttcat
    11461 ctccgtcggc accaacgacc tgattcaata catcttgtcc gtcgatcgcg gcgacgacag
    11521 cgtcagccat ctttaccagc ccggacatcc cgccgtgctg aaaatgctgc aacacgtcat
    11581 ccgcaccgcc aaccgcatgg acaaagacgt gtccgtatgc ggcgagatgg cgggcgatac
    11641 ggcgtttacc cgcatcctgc ttggtatggg gctgcgccgt ttttccatga atccgaacaa
    11701 catcctgccc gtcaaaaaca tcatcctgca cagcaatatc gcacagctcg aaaacgagat
    11761 tgccaaaatc gtccgctgcg aggacgagga aaaggcggaa aagctgatca aacagatgaa
    11821 cagcgtgtct gtcgaggaag aagccgactt caaggggcgg aaataaatac ggcaggtaaa
    11881 aaatagaaat acttaacaat gcccgcaatc tgaaattttg ccattcctgc aaaatagaaa
    11941 accgaaacag aaacccaaaa tcggtcattc cctcaaaaac agaaaaccaa aatcagaaac
    12001 ctaaaatccg tcattcccgc gcaggcggga atctaggttt gtcggcacag aaacttgtcg
    12061 ggaaaaacgg tttctttaga tttta
//
LOCUS       DAWGNT010000046        12014 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.046, whole genome shotgun sequence.
ACCESSION   DAWGNT010000046 DAWGNT010000000
VERSION     DAWGNT010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 12014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12014
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.046"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            188..622
                     /locus_tag="WHR98_000909"
     CDS             188..622
                     /locus_tag="WHR98_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HEZ2307607.1"
                     /translation="MNFALSVIMLTLASFLPVPPAGAAVFTWKDGGGNSYSDVPKQLH
                     PDQSQILNLRTRQTKPAVKPAQADAGKRTDGAAQENNPDTAEKNRQLEEEKKRIAETE
                     RQNKEENCRISKMNLKAVGNSNAKNKDDLIRKYNNAVNKYCR"
     gene            complement(670..2013)
                     /locus_tag="WHR98_000910"
     CDS             complement(670..2013)
                     /locus_tag="WHR98_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEZ2307608.1"
                     /translation="MFHSVNVFTGETLYRRPAQDYAEFERRLADLKMRGGAFAQLGVT
                     ERAARLQKFADRLEAEKERFAEMVCEEVGRCLHECRAEIGKSIELIRYYARLAPELLA
                     HKTIATQASLSQVRFEPLGVVFAVMPWNYPVWQVLRFAVPAMCAGNACAVKPAPSVAR
                     VSQALFDLVSDGIPLAGAWLDEAGTLKAVEDTDAMAFTGSTHTGRILAAHAGANLKKT
                     VLELGGSNAFIVMPDADLERAAAEACYSRFRDAGQSCNAAKRIIVTEAAADRFITLFL
                     AECAKLKMGDPKHPDTTLAPLHREDLRDRVHGQVEDAVSNGAVCLTGGKIPQGRGWFY
                     PATVLDRVNPACRVWREEVFGPAALILRAENEEHAIALANDSPFGLGACIYTADTERA
                     WRFAEKIQAGSVFINRHTSSDLRLPFGGVKDSGYGRELSEFGLYEFVNVKTYWQK"
     gene            complement(2018..2671)
                     /locus_tag="WHR98_000911"
     CDS             complement(2018..2671)
                     /locus_tag="WHR98_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEZ2307609.1"
                     /translation="MGLGMEIGKLIVAFLVLINPFSALSLYLDLTNGHSTKERRKVAR
                     TAAVAVFAVIAVFALIGGTLLKVLGISVGSFQVGGGILVLLIAISMMNGNDNPAKQNL
                     GAQPETGQARPARNAGAIAVVPIAIPITIGPGGISTVIIYASAAKTYSDIALIIAAGL
                     VVSAICYAILIVAGKVSRLLGTTGLTILNRIMGMMLAAVSVEIIVSGLKTIFPQLAG"
     gene            2822..3112
                     /gene="gatC"
                     /locus_tag="WHR98_000912"
     CDS             2822..3112
                     /gene="gatC"
                     /locus_tag="WHR98_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEZ2307610.1"
                     /translation="MALTLADVDKIARLSRLHLTAAEKEKSLQELNDIFAMVEQMQNI
                     NTDGIEPMAHPHEAALRLREDEVTETDRAAEYQAVAPEVRNRLYIVPQVIEE"
     gene            3175..4620
                     /gene="gatA"
                     /locus_tag="WHR98_000913"
     CDS             3175..4620
                     /gene="gatA"
                     /locus_tag="WHR98_000913"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEZ2307611.1"
                     /translation="MTQYTLKQASVLLQSKQISAVELASAYLAAIAEKNPALNGYITI
                     DQDKTLAEARAADERIAQGNASALTGVPVAYKDIFCQTGWRSACASKMLDNFISPYTA
                     TVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNLEHVPGGSSGGSAAVVA
                     ARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTAE
                     DCAILLNAMAGFDPKDSTSLEREKEDYTRDLNQPLKGVKIGLPKEYFGEGNSADVQTA
                     LQNTINLLKTQGAELVEVSLPQTKLSIPAYYVLASAEASTNLSRYDGVRYGHRAAQFG
                     DLEEMYGKTRAEGFGSEVKRRIMIGTYVLSHGYYDAYYLKAQKLRRLVADDFQTAFAR
                     CDLILAPTAPSTAPKIGADASPVETYLSDIYTIAVNLAGLPALTLPAGFSGGGLPIGV
                     QLIGNYFAEAKILGAAHQIQLNSDWHGKRPE"
     gene            4617..5549
                     /locus_tag="WHR98_000914"
     CDS             4617..5549
                     /locus_tag="WHR98_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK/YbjX family protein"
                     /protein_id="HEZ2307612.1"
                     /translation="MKQNRTFTFPDFRTVYSYAPLYRLQHLKYTLRKFFGKKEIYAFE
                     QFVNASPIRQGLFLHCPQNAYPLLRKFVDRRFNCKRRLDAMTADFLMAEKLFGTDILH
                     QMEDYRFHLVLAHLSDGISLWLNRNDNCVEEGAWSLSLRDEAGNRLYMATFAFVGTHL
                     LTASVQGPAGEEAKDTVRRITKQLHGLRPQQLMVTALQYFAAVLGLDGAMGIAQKHQV
                     KLRWKLKKRVKMNYDAFWQEYGASLERDGYWHLPQTPARKDLADIESKKRSMYRKRYE
                     MLDNMVAEMKDSLKTEARGISDGIQTEKPLRRTA"
     gene            5592..7022
                     /gene="gatB"
                     /locus_tag="WHR98_000915"
     CDS             5592..7022
                     /gene="gatB"
                     /locus_tag="WHR98_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEZ2307613.1"
                     /translation="MTWETVIGLEIHVQLNTKSKIFSGASTAFGAEPNAHAGVVECAL
                     PGVLPVMNREVVEKAIKLGLALDAKINRKNVFDRKNYFYPDLPKGYQISQLDLPIVEH
                     GKLEIVVGDDVKTINVTRAHMEEDAGKSVHEGLNGATGIDLNRAGTPLLEVVSEPEMR
                     SAAEAVAYAKALHSLVTWLNICDGNMAEGSFRVDANVSVRPKGQAEFGTRREIKNLNS
                     FRFLEQAINYEAEAQIEILEDGGKVQQATMLFDPEKGETRVMRLKEDAQDYRYFPDPD
                     LLPVIISDAQMQKAKAEMPELPKEMAARFVADYGVSEYDARLLTASRAQAAYFEEAAK
                     ESGQGKPTANWMNGELAAALNKEGMELADSPITAPRLAALVGKIADGTLSSKLAKKAF
                     EAMWAESEATIAEIIEKHGLQQMTDTGAIEAMVDEVLANNAKAVEQFKSGNEKALNAI
                     VGQVMKASKGKANPAQVQELIKAKLA"
     gene            7114..8124
                     /locus_tag="WHR98_000916"
     CDS             7114..8124
                     /locus_tag="WHR98_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster binding
                     domain-containing protein"
                     /protein_id="HEZ2307614.1"
                     /translation="MNHTVTLPDQTTFAANDGETVLSAAARQNLNLPHSCKNGVCGQC
                     KAELVSGDIQMGGHSEQALSEAEKAQGKILMCRTTAQSDISLNIPGYNPNALPVRTLP
                     ARIESMVFKHDVALLKLALPKAPPFAFYAGQYIDLLLPGNVSRSYSIANSPDQEGILE
                     LHIRRRENGVCSEMIFGSEPKVKEKGIVRVKGPLGSFTLQEDSGKPVILLATGTGYAP
                     IRSILLDLIRQDSGRAVHFYWGARHQDDLYALEEAQGLACRLKNACFTPVLSRPGEGW
                     QGRKGHVQDIAAQDHPDLSEYKVFACGSPTMTEQAKNLFVQQHKLPENLFFSDAFTPS
                     AS"
     gene            complement(8253..8885)
                     /gene="pdxH"
                     /locus_tag="WHR98_000917"
     CDS             complement(8253..8885)
                     /gene="pdxH"
                     /locus_tag="WHR98_000917"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HEZ2307615.1"
                     /translation="MDLHNIREDYSKRELSEGDCADNPIEQFERWLDEAVRAQVNEPT
                     AVNVAAVDGRGRPNSRMVLLKEVNSEGFVFFTNYHSRKGRSLDAHPFAAMTFFWPELE
                     RQVRVEGRVERLAEKLSDEYFESRPYQSRLGAWASAQSEVIPNKAVLVAKAAAVGLKH
                     PLHVPRPSHWGGYIVIPDLLEFWQGRPSRLHDRIQYRLLDGGWIRERLSP"
     gene            8945..9097
                     /locus_tag="WHR98_000918"
     CDS             8945..9097
                     /locus_tag="WHR98_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020424398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307616.1"
                     /translation="MHKLCPQSRSDDFIRKTAASGTISNRPTEGGILSTRPAAHAAEE
                     PPYQAS"
     gene            9106..10155
                     /locus_tag="WHR98_000919"
     CDS             9106..10155
                     /locus_tag="WHR98_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEZ2307617.1"
                     /translation="MSKQPTSKRQWRDGAAPSAKKTAKPFKSKAHPKGETRKTASQPY
                     GQKASDGIKLQNTPKQRAAKAKKLVVRNPNQKIMEHARDLKERRSDLSRMEPERLQKV
                     LAASGVGSRREMEEWINNGWVTVNGKTAQLGDKVTPDDHVTVKGSIIKLKWADRLPRI
                     ILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGELVQ
                     RFAHPSFEVEREYAVRVLGGLTGEQMRVLTEEGVMLEDGLAKVERIREQGGEGANKWY
                     NVVIKEGRNREVRRIFESQGLTVSRLVRVGFGPIGLPNRLKRGQFYELNPAEVANIIK
                     WADMLLPGERRRKKA"
     gene            complement(10224..11765)
                     /locus_tag="WHR98_000920"
     CDS             complement(10224..11765)
                     /locus_tag="WHR98_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HEZ2307618.1"
                     /translation="MKFLDREASIAKPGFNRWLVPPAALAVHLAIGQIYAYSVFNAPL
                     TKLIGITESAAGDWKLTTVGWIFSIALAMLGASAALFGTWMERVGPRKAIFAAACCFS
                     LGFFVSAFGVRTHNLFLLYLGNGVIGGVGLGLGYIGPVSTLMKWFPDKPGMATGLAIM
                     GFGGGAMLASPLSVSLMNTFSNAASVGVAETFAVLGLLYLALMMFGAFTIRVPADGWK
                     PEGYTAPKTQNKLVSSNHVNVSQAMKTPQFWLLFWVLCLNVTAGIGVLGQASVMIQEL
                     FSETSIGRQAAVGAGAAAGFVSLLSLFNMGGRFLWSSVSDKIGRKNTYTIFFVLGSLL
                     YFAVPSIGEGGSKALFIIGFCVIISMYGGGFAAIPAYLKDLFGTYQVGAIHGRILLAW
                     STAAVIGPVLVNYIRQSQIDSGIPAAQAYSVTMYIMAGLLIIGLLCNLAVKSVHEKHH
                     EKDIKTAAHSGNPDDETAISDAYLVGEKVSGGGISVWWRWALAVIPLAYGVVMIFVKA
                     LDLFS"
BASE COUNT         3070 a         3655 c         2980 g         2309 t
ORIGIN      
        1 tctgcggctt cgtcgccttg tcctgatttt tgttaatcca ctatattttt gggaatctgt
       61 tttaccccaa tatataaagc accatattaa ggcggagttt cttccccact ttgacccgaa
      121 cccggaaaag acaccgccca agccaatcct gatgctgccc cgacagccaa ccattaagga
      181 aatcctaatg aactttgctt tatccgtcat tatgttgacc ctcgcctctt tcctgcccgt
      241 cccgcctgcc ggagccgccg tctttacttg gaaggacggc ggcggcaaca gctattcgga
      301 tgtaccgaaa cagcttcatc ccgaccaaag ccaaatctta aacctgcgga cgcgccaaac
      361 caaaccggcg gtcaaacccg cccaagccga cgcagggaag cgcacagacg gcgcggcaca
      421 ggaaaacaat cccgacactg ccgagaaaaa ccggcagctt gaggaagaaa agaaaagaat
      481 tgccgaaacc gaacggcaga acaaagaaga aaactgccgg atttcaaaaa tgaacctgaa
      541 ggcggtggga aattcaaatg caaaaaacaa ggatgatttg attcggaaat acaataacgc
      601 cgtaaacaaa tactgccgtt aatcggctct agcgcaaacc cgatgccgtc tgaagcggca
      661 cggggtttgt catttctgcc agtaggtttt gacgttgacg aactcgtaca gcccgaattc
      721 ggacaattcg cgcccgtaac cggaatcttt gactccgccg aaaggcaggc gcaaatcgct
      781 gctggtatgg cggttgataa acaccgatcc cgcctgtatt ttttcggcaa accgccaagc
      841 gcgttcggta tcggcggtat aaatgcaggc acctagcccg aacggggaat cattggcaag
      901 ggcgatggca tgttcttcgt tttcggcgcg caaaatcagg gcggccggcc cgaatacttc
      961 ttctctccag acgcggcagg caggatttac cctgtctaaa accgtcgcgg gataaaacca
     1021 gcctcgccct tgtgggattt ttccgccggt caggcatacc gcgccgtttg aaacggcatc
     1081 ttcaacctgc ccgtgaaccc tgtcccgcaa atcttcgcgg tgcagcggtg caagcgtagt
     1141 atcgggatgt ttggggtcgc ccattttcaa tttggcgcat tcggcaagaa acagcgtgat
     1201 aaaacgatcg gctgcggctt cggttacgat gatgcgtttg gcggcgttgc acgattgccc
     1261 cgcatcgcgg aaacgggaat aacaggcttc tgcggcggcg cgttccaaat cggcatcggg
     1321 catcacgata aaggcgttgc tgccgccgag ttccaagacg gttttcttga ggtttgcgcc
     1381 cgcatgtgcc gcaaggatgc gccccgtatg cgtcgagccg gtaaacgcca tcgcatcggt
     1441 atcttcaacc gccttgagcg tgcccgcctc atccaaccac gcgcctgcca aaggaatgcc
     1501 gtctgaaacc aaatcaaaca acgcctgact gacgcgtgcc acgctgggcg cgggtttgac
     1561 ggcgcacgcg ttgcccgcgc acatagcggg aacggcgaaa cgcaatacct gccagacggg
     1621 atagttccaa ggcatgacgg caaacaccac gcccaaaggc tcaaacctta cctgactcaa
     1681 actcgcctgc gtcgcgatgg ttttgtgggc gagcagttcg ggagcgaggc gggcgtaata
     1741 gcgtatcagt tcgatagact tgccgatttc cgcacggcat tcgtgcaggc agcgtccgac
     1801 ttcttcgcac accatttccg caaaacgctc tttctccgcc tccaaacggt cggcaaattt
     1861 ttgcagacgc gcggcacgtt cggttacgcc cagttgcgcg aacgccccgc cgcgcatttt
     1921 caaatccgcc agccgccgtt caaactccgc ataatcttga gctggacggc ggtaaagcgt
     1981 ttcgcccgta aatacattga cactgtgaaa catcgaatca acctgccagt tgcgggaata
     2041 tcgttttcag tcccgacaca ataatctcca ccgataccgc cgccagcatc atacccataa
     2101 tgcggtttaa aatcgtcagc cccgtcgtgc ccagcaggcg gctgaccttc ccggcaacga
     2161 ttaaaatggc ataacaaatc gcactgacca ccaaaccggc cgcgataatc agcgcgatgt
     2221 cgctgtacgt tttggctgcc gaagcgtaaa taatcacggt cgaaataccg cccgggccga
     2281 tggtgatcgg tatggcgatg ggcacgacgg caatcgctcc ggcattgcgg gcggggcgcg
     2341 cctgccccgt ttccggctgc gcgccgagat tctgcttggc gggattgtcg ttgccgttca
     2401 tcatcgaaat ggcgatcagc agcaccaaaa tcccgccgcc gacctgaaac gaaccgacgc
     2461 tgatgcccaa aaccttcagc agcgtaccgc cgatcagcgc aaataccgca atcacggcaa
     2521 acacggcaac ggcggccgtc cgcgcgacct tcctgcgctc cttcgtgctg tgcccgttgg
     2581 tcaggtcaag gtaaagcgac aacgcgctaa acggattaat cagcaccaaa aaagccacaa
     2641 tcagcttgcc gatttccatg cccaatccca ttatttcccc ctccttcaaa cccgtgcggc
     2701 aggcattcga tgctgcaaat tgccgccgca acggattttt ccgttataat taaaaattca
     2761 agcaatacgc cccatcatac ccgaacgacg gtatctttac catcagacaa ggatgctttt
     2821 catggcactg acacttgccg acgtagacaa aatcgcccga ctctcccgac tgcacctgac
     2881 tgcggcagaa aaagaaaaat cgcttcaaga attaaacgac attttcgcta tggtcgaaca
     2941 gatgcagaac atcaacacag acggcatcga accgatggcg catccgcacg aggccgccct
     3001 gcgcctgcgc gaagacgaag taaccgaaac cgaccgcgcc gccgaatatc aggcggttgc
     3061 tccggaagta cgcaaccgtc tgtacatcgt accgcaagtt atcgaagaat aatccgaata
     3121 tgcttcagac ggcatcagca ataccgcccg aagcccttta aggatggaag atttatgacc
     3181 caatacacat tgaaacaggc aagcgtcctg ttgcagtcca aacagatttc cgccgtcgaa
     3241 ctggcaagcg cataccttgc cgccatcgcc gaaaaaaatc ccgccctcaa cggctatatc
     3301 accatcgacc aagataaaac ccttgcagaa gcccgtgccg ccgacgaacg tatcgcgcag
     3361 ggcaacgcct ccgcgcttac cggcgtaccc gtcgcctaca aggatatttt ctgccaaacc
     3421 ggctggcgca gcgcgtgcgc ttccaaaatg ctcgacaact tcatctcccc ttacaccgcc
     3481 accgtcgtcc aaaacctgct cgacgaaggc atggtaacgc tcggccgcac caatatggat
     3541 gagttcgcta tgggttcgac caatgaaaac tcattctacg gtgcagccaa aaacccatgg
     3601 aatcttgagc acgtccccgg cggttcgtca ggcggttccg ccgccgtcgt tgccgctcgc
     3661 cttgcccctg ccgcgctcgg ttcggatacc ggcggctcta tccgccagcc tgcatcgcac
     3721 tgcggcatta ccggcatcaa acccacatac ggcacggttt cccgcttcgg tatggtcgcc
     3781 tacgcctcca gcttcgacca ggccggtccg atggcgcaaa ctgccgaaga ctgcgcgatt
     3841 ctgttgaacg cgatggcagg tttcgacccc aaagactcca ccagcctcga acgcgaaaaa
     3901 gaagactaca cccgcgattt gaaccaaccg ctcaaaggcg tgaaaatcgg cctgcccaaa
     3961 gaatacttcg gcgaaggcaa cagcgccgat gttcagacgg cattgcaaaa tactatcaac
     4021 ctcctcaaaa cccaaggcgc ggaattggtc gaagtttccc tgccgcaaac caagctgtcc
     4081 atccccgcct actacgtcct cgcctccgca gaagccagca ccaacctttc acgttacgac
     4141 ggcgtacgtt acggacaccg tgccgcccaa ttcggcgatt tggaagaaat gtacggcaaa
     4201 acccgcgccg aaggtttcgg cagcgaagtc aaacgccgca tcatgatcgg cacttatgta
     4261 ctgtcgcacg gctactacga tgcctactat ctcaaagccc aaaaactgcg ccgcctcgtt
     4321 gccgatgatt ttcagacggc atttgcacgg tgcgacctca tcctcgcgcc gaccgcaccc
     4381 tccaccgcac ccaaaatcgg agcggatgct tcgccggttg aaacctactt gagcgacatt
     4441 tacaccatcg ccgtcaacct cgccggactg cccgcattga ccctgcccgc aggcttcagc
     4501 ggcggcggac tgcccatcgg cgttcagctt atcggcaact acttcgccga agccaaaatc
     4561 ctcggtgcgg cacatcaaat ccaactcaac agcgattggc acggcaaacg acccgaatga
     4621 agcagaaccg cacctttacc ttccccgatt ttcgcaccgt ttacagctat gcgcctttat
     4681 atcggctgca acatttaaaa tacacattgc gaaaattttt cggaaaaaaa gaaatttacg
     4741 ctttcgagca gtttgtcaac gcgtccccta tccgtcaggg gctgttcctc cactgcccgc
     4801 aaaatgccta tccgctgctg cgcaaatttg ttgacagacg ttttaactgc aaacgccgtt
     4861 tagatgcgat gacggcagat tttctcatgg cggaaaaact gttcggcaca gacatcctgc
     4921 accaaatgga agactaccgc ttccatctgg tcttggcgca cctttcagac ggcatcagct
     4981 tgtggctcaa ccgcaacgac aactgcgtcg aagaaggcgc gtggtcttta tctttgcgcg
     5041 acgaagcagg caaccggctg tatatggcga ccttcgcctt tgtcggcaca cacctgctga
     5101 cagcctccgt acaagggccg gcgggtgaag aagccaaaga caccgtccgc cgcataacca
     5161 aacaactcca cggcttgcgt ccccaacaac tgatggtaac cgccctgcaa tatttcgccg
     5221 ccgtactcgg cttggacggc gcaatgggca ttgcacaaaa acatcaggtc aaactgcgct
     5281 ggaaacttaa aaagcgtgtc aaaatgaatt acgacgcatt ctggcaggaa tacggcgcaa
     5341 gtttggaacg ggacggctac tggcatctcc cccaaacccc cgcccgcaaa gaccttgccg
     5401 acatcgaaag caaaaagcgt tcgatgtacc gcaagcgtta tgaaatgctg gacaatatgg
     5461 ttgcagagat gaaagacagt ctgaaaacag aagcacgcgg catttcagac ggcatccaaa
     5521 cggaaaaacc gctccgccgg acagcctgac gcgaagacta tcgaattgat attttagaga
     5581 aagaagctct tatgacctgg gaaaccgtaa tcggcttgga aatccacgtc caattgaaca
     5641 ccaaatccaa aatcttcagc ggcgcatcga ccgcattcgg cgcagaaccc aacgcgcacg
     5701 ccggcgtagt ggaatgtgct ttgccgggcg tactgccggt aatgaaccga gaagtcgttg
     5761 aaaaagccat caaattaggc ttggctttgg atgcgaaaat caaccggaaa aacgtgttcg
     5821 accgtaaaaa ctacttctat cccgacttac caaaaggcta tcaaatcagc cagttggact
     5881 taccgattgt cgaacacggc aaattggaaa tcgtagtcgg cgacgatgtg aaaaccatca
     5941 acgtaacccg cgcccatatg gaagaagacg cgggcaagtc cgtacatgaa ggcttgaacg
     6001 gcgcgaccgg tatcgatttg aaccgcgccg gcacgccttt attggaagtc gtatccgaac
     6061 ccgaaatgcg ctccgccgcc gaagccgttg cctacgccaa agccttgcac agcttggtaa
     6121 cctggctgaa catttgcgac ggcaatatgg cggaaggttc gttccgcgtc gatgccaacg
     6181 tatccgttcg cccgaaaggt caagcggaat tcggcacgcg ccgcgagatt aaaaacctca
     6241 attccttccg tttcttggag caggcgatta attacgaagc agaagcgcaa atcgagattt
     6301 tggaagacgg cggcaaagta cagcaggcaa cgatgctgtt tgatcccgaa aaaggcgaaa
     6361 cccgcgtaat gcgcctgaaa gaagacgcgc aagactaccg ctacttcccc gaccccgatt
     6421 tgctgcccgt catcatttca gacgctcaaa tgcaaaaagc caaagcagaa atgcccgagc
     6481 tgccgaaaga aatggcagcg cgtttcgtgg cggactacgg cgtgtccgaa tacgacgcgc
     6541 gcctgctcac cgcaagccgc gcacaggccg cctattttga agaagccgcc aaagagagcg
     6601 gacaaggcaa gccgactgcc aactggatga acggcgaact cgccgccgca ctgaacaaag
     6661 aaggcatgga acttgccgac agcccgatta ccgctccgcg cctcgccgcg ctggtaggca
     6721 aaatcgccga cggcacatta agcagcaaat tagcgaaaaa agcctttgaa gccatgtggg
     6781 cagaatccga agccaccatt gccgaaatca ttgaaaaaca cggtttgcag caaatgaccg
     6841 ataccggcgc gattgaagcc atggtggacg aagtgctggc aaacaacgcc aaagccgtgg
     6901 aacagttcaa atccggcaac gaaaaagccc tgaatgcgat tgtgggacaa gtgatgaagg
     6961 ccagcaaagg caaagccaac cccgcgcagg ttcaagagct gattaaagcc aaacttgcct
     7021 gacaagcaag atgccgtctg aaacccaaat ccgacgttca gacggcattt tcacagtctg
     7081 accacattaa aacagcataa aaaacaatat tccatgaacc acaccgttac cctgcccgac
     7141 caaaccacct ttgccgccaa cgacggtgaa accgttttgt ccgccgccgc ccgacaaaac
     7201 cttaatctgc cccattcctg caaaaacggt gtctgcgggc aatgcaaagc cgaactggtc
     7261 agcggcgata ttcaaatggg cggacactcc gaacaggctt tatccgaagc agaaaaagcg
     7321 caaggcaaga ttttgatgtg ccgcaccacc gcgcaaagcg acatcagcct caacatcccc
     7381 ggctacaacc ccaacgccct ccccgtccgc accctgcccg cacgcatcga aagtatggtt
     7441 ttcaaacacg atgtcgccct cttgaaactt gccctgccca aagccccgcc gtttgccttc
     7501 tacgccgggc aatacattga tttactgctg ccgggcaacg tcagccgcag ctactccatc
     7561 gccaattcgc ccgaccaaga aggcattttg gaactacaca tccgcaggcg cgaaaacggt
     7621 gtctgctcgg aaatgatttt cggcagcgaa cccaaagtca aagaaaaagg catcgtccgc
     7681 gttaaaggcc cgctcggttc gtttaccctg caggaagaca gcggcaaacc cgtcatcctg
     7741 ctggcaaccg gcacaggcta cgcccccatc cgcagcatcc tgctcgacct tatccgccaa
     7801 gacagcggcc gcgccgtcca tttctactgg ggcgcgcgtc atcaagatga tttgtatgcc
     7861 ctcgaagaag cacaagggtt ggcatgccgt ctgaaaaacg cctgcttcac ccccgtattg
     7921 tcccgccccg gagagggctg gcagggaaga aaagggcacg tacaagacat cgcggcacaa
     7981 gaccaccccg acctgtcgga atacaaagtg tttgcctgcg gttcccccac tatgaccgaa
     8041 caagcaaaga atctgtttgt gcaacagcat aagctgccgg aaaacttgtt tttctccgac
     8101 gcattcacgc cgtccgcatc ataattcccc ggtataaaga agattcgggc tttccgttcg
     8161 gaacacaaaa aacttcccgt ccgtgttttc ccgtgaaaaa atgccgtctg aaacccaatt
     8221 ccggctttca gacggcatat gttttttcct gttcaaggcg acagccgctc gcgtatccag
     8281 ccgccatcca gcaaacggta ttggatgcgg tcgtgcagcc tactcggcct gccctgccag
     8341 aactcaagca aatcgggaat cacaatatag ccgccccaat gcgacggacg cggcacgtgc
     8401 aaaggatgtt tgagtccgac cgccgccgcc tttgccacca ataccgcctt gttcggaatc
     8461 acctcgctct gcgcacttgc ccacgcaccc aaacggctct gatacgggcg gctctcaaaa
     8521 tattcgtccg acaatttctc cgccagcctt tcaacacgcc cttccacgcg cacctgacgc
     8581 tccagctccg gccaaaaaaa cgtcatcgcc gcaaatggat gagcatccag cgaacgcccc
     8641 ttgcggctgt gataattcgt aaagaaaaca aaaccttcag aattaacttc cttcagcagc
     8701 accatacggc tgttgggtct accgcgtccg tcgactgccg ccacattgac cgccgtcggc
     8761 tcgttgacct gtgcgcgtac cgcctcgtcc aaccaccgct cgaactgttc gatcggattg
     8821 tcggcgcaat cgccttccga caattcccgt ttgctgtaat cttcccgaat attgtgcaaa
     8881 tccatttacc gctcctcttg ttatttgaaa gattctaccc ccgcacgcaa accgatttca
     8941 accgttgcac aaactttgtc cccaaagccg cagcgacgat ttcatccgca aaaccgccgc
     9001 atcaggtaca atatcgaacc gtccgaccga gggcggcatt ttatcaaccc gtcctgccgc
     9061 acacgccgca gaagaaccgc cttatcaggc gagttaggaa aaatgatgtc caagcaaccc
     9121 accagcaaac gccaatggcg cgacggcgca gccccgtctg ccaaaaaaac cgccaaaccg
     9181 ttcaaaagca aagcccatcc caaaggcgaa acgcgcaaaa ccgcatccca accttacgga
     9241 caaaaagctt cagacggcat caagctgcaa aacaccccca aacaacgcgc cgccaaagcc
     9301 aaaaaactcg tcgtccgcaa tcccaaccaa aagattatgg aacacgcgcg cgatttgaaa
     9361 gaacgccgca gcgacctgtc gcgcatggaa cccgaacgcc tgcaaaaagt gcttgccgcg
     9421 tccggcgtcg gctcgcgccg cgaaatggaa gaatggatca acaacggctg ggtaacggtc
     9481 aacggcaaaa ccgcgcaact gggcgacaaa gttacccccg acgaccacgt taccgtcaaa
     9541 ggcagtatca tcaaactcaa atgggcggac cgcctgccgc gcatcatcct gtattacaaa
     9601 caagaaggcg aaatcgtttc ccgcgacgat ccgcaaggcc gcgtcagcat attcgaccgt
     9661 ctgccgcagg ccgccagcag ccgctgggtc gccatcggac gcttggacat caacaccagc
     9721 ggacttctga ttcttaccac ctccggcgaa ctcgtccaac gtttcgccca ccccagcttc
     9781 gaagtcgaac gcgaatacgc cgtgcgcgtc ttgggcgggc tgaccggcga acaaatgcgc
     9841 gtcctcaccg aagaaggcgt gatgctcgaa gacggcttgg caaaagtcga acgcatccgc
     9901 gaacaaggcg gcgaaggcgc gaacaaatgg tacaacgtcg tgattaaaga aggccgcaac
     9961 cgcgaagtgc gccgcatttt tgaaagccaa ggactcaccg tcagccgcct cgtgcgcgtc
    10021 ggcttcggtc ccatcggact gcccaaccgc ctcaaacgcg ggcagttcta cgaactcaac
    10081 cccgccgaag tcgccaacat catcaaatgg gcggacatgc tgctgccggg cgaacgccgc
    10141 cgcaaaaaag cctaaacccg ccaaaacaca aaaatgccgt ctgaaacatc tactgtttca
    10201 gacggcattt tgttcgggcg ttttcaggag aaaaggtcga gtgctttgac aaagatcatc
    10261 accacgccgt aggcgagcgg tatgacggcc aatgcccaac gccaccagac cgatatgccg
    10321 ccgccggaaa ctttttcgcc cacaaggtaa gcgtcagata tggcggtttc gtcatcgggg
    10381 ttgccgctgt gtgcggcggt tttgatgtct ttttcgtggt gtttttcgtg tacggatttg
    10441 acggcgaggt tgcacaacaa accgataatc agcagacccg ccatgatgta catggttacg
    10501 ctgtatgcct gtgccgccgg tatgccgctg tcgatttggc tttggcgtat gtaattgacc
    10561 agtaccgggc cgatgacggc ggcggttgac caggccagca ggatgcgtcc gtgaatcgcg
    10621 ccgacctgat aggtgccgaa caggtctttc aggtaggcgg gaatggcggc aaatccgccg
    10681 ccgtacatgg aaataatcac gcaaaagccg atgatgaaca gggctttgct gccgccctcg
    10741 ccgatggagg gaacggcgaa atacagcagc gaaccgagta cgaagaagat ggtgtaggtg
    10801 tttttgcgtc cgattttgtc ggaaacgctc gaccacaaaa agcgtccgcc catgttaaac
    10861 aggctcagga ggctgacgaa gcctgccgcc gcacctgcgc cgactgccgc ctgcctgcct
    10921 atggaggttt cggaaaagag ttcctgaatc atcacggatg cctgacccaa tacgccgatg
    10981 ccggcagtta cgttcaggca caatacccag aacaacagcc aaaactgcgg cgttttcatg
    11041 gcttgggaca cgttgacatg attgctgctg accagcttgt tttgcgtttt cggcgcggta
    11101 tagccttcag gtttccagcc gtcggcaggt acgcggatgg taaacgcgcc gaacatcatc
    11161 agtgcgaggt aaagcaggcc caatacggcg aaggtttcgg caaccccaac cgaagcagcg
    11221 tttgaaaagg tgttcatcag tgatacggaa agcggcgagg ccagcattgc gccgccaccg
    11281 aaacccataa tcgccaaacc ggtcgccata cccggcttgt cgggaaacca tttcatcagt
    11341 gtggaaaccg gcccgatgta gcccaaaccc aagcctacgc cgccgatgac gccgttgccc
    11401 aaatagagca ggaagaggtt gtgcgtacgc acgccgaatg cggatacgaa gaagcccagg
    11461 ctgaaacagc aggcggcggc aaatatggct ttgcgcggcc ctacccgttc catccacgta
    11521 ccgaacaggg cggccgacgc gcccagcatc gcgagtgcga tactgaaaat ccaacctacg
    11581 gtcgtcagct tccaatctcc ggccgccgat tcggttatgc cgataagttt ggtcagcggc
    11641 gcgttgaata cggaataggc gtaaatctgc ccgatggcaa ggtgtaccgc caatgctgcg
    11701 ggcggtacga gccaacggtt gaaacccggc ttggcaatgc ttgcctcacg gtctaaaaac
    11761 ttcataacat cctctttctg tcagttgaaa aataaaattt catttgctca atggaaactt
    11821 attgaaaatt ataaaaaaat atcgggtcgg gtttttatcc gccccaagat gcgccgtctg
    11881 aaacatttcg ggtgtacgga aaggtttctg ttttttccga caaattcctg cggcttttcg
    11941 cttccggatt cccgcttttg cgggaatgac gaattaaaga ttatcttaag gtcaagggac
    12001 tggattcccg cttt
//
LOCUS       DAWGNT010000047        11626 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.047, whole genome shotgun sequence.
ACCESSION   DAWGNT010000047 DAWGNT010000000
VERSION     DAWGNT010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11626
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.047"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            80..1264
                     /gene="coaBC"
                     /locus_tag="WHR98_000921"
     CDS             80..1264
                     /gene="coaBC"
                     /locus_tag="WHR98_000921"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEZ2307619.1"
                     /translation="MGKHILLGVTGSIAAYKSCELVRLLKKQGHSVTVVMSRSATEFV
                     SPLTFQALSGNPVLTDTHGGNSSNGMEHINLTRNADVFLIAPASMNTVAKICNGVADN
                     LLTSLAAARKCPLAIAPAMNVEMWLNPANQRNIAQLVSDGITVYMPGLGEQACGENGM
                     GRMPEPAELLDLLPDLWTPKILRGKKILITAGATFEAIDPVRGITNTSSGKMGVALAR
                     ACRAAGAEVSLIHGQLQTALPFGISDTVQAVSAEDMHRAVHRLIEKQDAFISVAAVSD
                     YKVKNKSTQKFKKDKNAKPLSIELDENPDILASIASLPNPPFCIGFAAETENVMAYAR
                     EKRIKKKIPVIVANDVSIAMGKPTNRITIIGDDGELSFPETSKDEAAMQIVERLAVYL
                     NK"
     gene            complement(1331..3487)
                     /locus_tag="WHR98_000922"
     CDS             complement(1331..3487)
                     /locus_tag="WHR98_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEZ2307620.1"
                     /translation="MPVPQPTAPYDPLTAEARTLLFHTASYLKPEEQAELEKAVAYAF
                     RAHDGQTRKSGEPYITHPIAVATQLAVWHMDVQGLCAGVMHDVLEDTGVTKGEMAAVF
                     GNTIAEMVDGLSKLEKLKFEDHAEHQAESFRKLILAMTKDVRVIVVKLADRLHNMRTL
                     GSMRPDKRRRIARETLEIYAQIANRIGLNNAYRELQDLSFQNLHPNRYETLKKAMDKS
                     RKNRQDVVGKVLRAFGQRLVGANIEAKIKGREKNLYGIHQKMMAKKLRFAEVMDIYGF
                     RVIVNSIPACYAALGALHTLYQPKPGRFKDYIAIPKSNGYQSLHTTLVGPYGLPIEVQ
                     IRTKEMDAVAEGGIAGHWSYKSYSKTVDQAVLHTNRWLKNILDLQASSANAIEFLEHV
                     KVDLFPNEIYILTPKGKILTLPKGATPVDFAYAVHTDIGHKTVAARINNIMMPLRTKL
                     KTGDSVEIITSEHAKPNPAWLNFAVSGRARSAIRQYIKNLNRHDAVVLGESLLQKALS
                     SLLPKDVLLSDGIKEKYLADLNDKQTSFEEVLYNVGMGHTLPVYVAMHIAELAGEHFG
                     SEVRLSSIKVDGQESGHIHFAECCHPVPGDSIRLLLVKGKGMIIHRDTCPTLLKSDPE
                     QQLDADWENMNGQNYRVGLQVQSEDSHGLLALMAQAISDSGADIESVETPSKSQSGTE
                     GFVEFKFLLKVKNLNQLNQIIQNLHSIPYIRKVIRS"
     gene            complement(3580..3786)
                     /locus_tag="WHR98_000923"
     CDS             complement(3580..3786)
                     /locus_tag="WHR98_000923"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEZ2307621.1"
                     /translation="MARITTEDCTGKISNHFDLTLVAARRARQLENGNTPLVDDVRNN
                     KPTVTALREIAAGHIGTELLTRNK"
     gene            complement(3845..4462)
                     /gene="gmk"
                     /locus_tag="WHR98_000924"
     CDS             complement(3845..4462)
                     /gene="gmk"
                     /locus_tag="WHR98_000924"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEZ2307622.1"
                     /translation="MSAYRKGNIFIISAASGTGKTTLVSRLLANHNGLRVSVSHTTRP
                     PREGEANGVHYHFVSKEEFESLIAQEAFLEYADVFGNYYGTSAEGVNALAAAGYDVIL
                     EIDVQGAAQVRDALPEAVGIFILPPSFDVLAARLNGRGTDSREVIQRRLAKARHEIEQ
                     SVLFDFVVVNDDLARAEEDLVHIVNACRLKRSRQLGFIADLLENS"
     gene            4590..5189
                     /locus_tag="WHR98_000925"
     CDS             4590..5189
                     /locus_tag="WHR98_000925"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEZ2307623.1"
                     /translation="MALKTSNLEHAMLVHPEAMSVGALADKIRKIENWPQKGILFHDI
                     TPVLQSAEYFRLLVDLLVYRYMDQKINIVAGLDARGFIIGAALAYHLNVGFVPIRKKG
                     KLPFETVSQSYALEYGEAAVEIHTDAVKPGSRVLLVDDLVATGGTMLAGLELIRKLGG
                     EIVEAAAILEFTDLQGGKNIRASGAPLFTLLQNEGCMKG"
     gene            complement(5235..6023)
                     /locus_tag="WHR98_000926"
     CDS             complement(5235..6023)
                     /locus_tag="WHR98_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEZ2307624.1"
                     /translation="MNPKIVFFDIDDTLYRKYTDTLRPSVKTAVAALRGKGILTALAT
                     GRSLATIPEKVRDMMAETGMDAVVTINGQFALLHGKTVREVPMDAGLMGRVCAHLDGL
                     GMDYAFVGGEGIAVSALSECVCRALKHIASDFFADKDYFSSKPVYQMLVFAEENEMPP
                     WSDIVKREGLKTVRWHEEAVDLLPAGASKTDGIRSVVEALGLEMADVMAFGDGLNDVE
                     MLSEVGFGVAMGNGEQAAKEAAKYVCPGVDEDGVLRGLQDLGVI"
     gene            6213..7568
                     /gene="yegQ"
                     /locus_tag="WHR98_000927"
     CDS             6213..7568
                     /gene="yegQ"
                     /locus_tag="WHR98_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HEZ2307625.1"
                     /translation="MKAPELLLPAGGLERMRAAYDYGADAVYAGSPRYSLRARNNEFA
                     KLDVLEQGIKEAHERNKKFFLTVNTLPHNSKLKTFVSDMEPLIAMKPDALIMADPGLI
                     MTVREKWPEMPIHLSVQANTTNYWGVKFWQNIGVERIILSRELSMEEIAEIRQQCPDI
                     ELEVFIHGALCIAYSGRCLLSGYFNHRDPNQGTCTNSCRWDYKVHNATESDAGDAQLL
                     QGFNFEKAQEEANQNFEGINGQKRHPYADKVFLIEESNRPGEMMPIMEDEHGTYIMNS
                     KDLRGIEVVEKLAKIGVDSLKVEGRTKSLYYVARVAQSYRKAIDDAVAGRPFDYSLLS
                     ELEGLANRGYTSGFLERHQTQDYQNYLSGHSTAKQSQYVGHVTEIDENGWATIEVKNR
                     FAVGDSLEIIHPSGNQTIKLEQMTRKGQPVDVAPGNGIQVKIPNMQGKEKALIARVLN
                     P"
     gene            7702..8178
                     /locus_tag="WHR98_000928"
     CDS             7702..8178
                     /locus_tag="WHR98_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease"
                     /protein_id="HEZ2307626.1"
                     /translation="MLAVCQSGSAPKNAHTASAGTPAGESCKVIRGDTTGSDKNIIYR
                     CSNGQAAINAATAASVLESGIPVSFGGGGVPVANGRNLVTRQAANGVGKSDSEACERA
                     LINAARKFQQTAGKLGGRRVTGFQSYFDKQPLQGGQYDCQAGSFHVRVVMRANVVR"
     gene            complement(8386..10761)
                     /gene="hmbR"
                     /locus_tag="WHR98_000929"
     CDS             complement(8386..10761)
                     /gene="hmbR"
                     /locus_tag="WHR98_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent hemoglobin receptor HmbR"
                     /protein_id="HEZ2307627.1"
                     /translation="MKPLQMLPIAALVGSIFGNPVFAADEAATETTPVKAEVKAVRVK
                     GQRNAPAAVERVNLGRIKQEMIRDNKDLVRYSTDVGLSDSGRHQKGFAVRGVEGNRVG
                     VSIDGVNLPDSEENSLYARYGNFNSSRLSIDPELVRNIEIVKGADSFNTGSGALGGGV
                     NYQTLQGRDLLLPERQFGVMMKNGYSTRNREWTNTLGFGLNNDRVDAALLYSQRRGHE
                     TESAGNRGYAVEGEGSGANIRGSARGIPDPSQHKYHNFLGKIAYQINDNHRIGASLNG
                     QQGHNYTVEESYNLTASSWREADDVNRRRNANLFYEWTPDSNWLSSLKADFDYQKTKV
                     AAVNNKGSFPMDYSTWTRNYNQKDLDEIYNRSMDTQFKRFTLRLDSHPLQLGGGRHRL
                     SFKTFASRRDFENLNRDDYFFSGRIVRTASTIQHPVKTTNYGFSLSDQIQWNDVFSSR
                     AGIRYDHTKMTPQELNAECHACDKTPPAANTYKGWSGFVGLAAQLNQAWRVGYDITSG
                     YRVPNASEVYFTYNHGSGNWLPNPNLKAERSTTHTLSLQGRSEKGTLDANLYQSNYRN
                     FLSEEQKLTTSGDVSCTQMNYYYGMCSNPYSEKLEWQMQNIDKARIRGIELTGRLNVD
                     KVASFVPEGWKLFGSLGYAKSKLSGDNSLLSTQPLKVIAGIDYESPSEKWGVFSRLTY
                     LGAKKVKDAQYTVYENKGWGTPLQKKVKDYPWLNKSAYVFDMYGFYKPVKNLTLRAGV
                     YNLFNRKYTTWDSLRGLYSYSTTNSVDRDGKGLDRYRAPSRNYAVSLEWKF"
     gene            complement(10935..11564)
                     /locus_tag="WHR98_000930"
     CDS             complement(10935..11564)
                     /locus_tag="WHR98_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biliverdin-producing heme oxygenase"
                     /protein_id="HEZ2307628.1"
                     /translation="MSETENQALTFAKRLKADTTAVHDSVDNLVMSVEPFVSKENYIK
                     FLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLKDLGEEPYKFDKELPHE
                     TGNKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHL
                     NALNLTPEAEAEAIQGAREAFAFYKVVLRETFGLAADAEAPEGMMPHRH"
BASE COUNT         2815 a         3117 c         2841 g         2853 t
ORIGIN      
        1 tccaaaacgg taactaatgt atccgtactt tgttatagaa tggctgctgt ttttttcttc
       61 gtaattagaa attgtcaaaa tgggtaaaca tattctttta ggtgtaacgg gcagtattgc
      121 ggcgtataag tcttgcgagt tggttcgtct gctgaaaaaa caggggcatt cggttacggt
      181 ggttatgagc cgctcggcaa ctgaatttgt ttctccgctg acttttcagg ctttaagcgg
      241 caatcctgtc ctgaccgaca cgcacggcgg caacagttca aacggtatgg aacatatcaa
      301 cctgacccgg aatgcggatg tttttctgat tgcgccggca agtatgaata ccgtggcaaa
      361 aatctgtaac ggcgtggcag ataacctact gaccagtctg gcagccgcac ggaaatgtcc
      421 gcttgccatc gctcccgcga tgaatgtgga aatgtggctc aaccctgcca accaacggaa
      481 tatcgcacaa ctggtttcag acggcattac tgtctatatg ccgggcttgg gcgaacaggc
      541 ttgcggagaa aatggcatgg gaaggatgcc ggaacctgcc gaattgctgg atttgcttcc
      601 ggacttgtgg acaccgaaaa ttttaagggg caagaaaatc ttgattaccg caggtgcgac
      661 atttgaagcc attgaccctg tcaggggcat cacaaatacc tccagcggaa aaatgggggt
      721 agctttggcg cgggcgtgcc gtgccgccgg tgcggaagtc agcctgattc acggacagct
      781 tcaaaccgcg ctgcctttcg gcatatccga tacggttcaa gccgtcagcg ctgaagatat
      841 gcatcgcgca gtgcatcgtt tgattgaaaa gcaagatgct tttatttctg ttgccgccgt
      901 ctcagactat aaggttaaaa acaagagtac gcaaaaattc aaaaaagata aaaatgccaa
      961 accgttatcc atcgaattgg atgagaaccc cgatattttg gcttctattg cctcattgcc
     1021 aaacccgccg ttctgcatcg gttttgccgc tgaaacggag aatgtaatgg catatgcacg
     1081 agaaaaacgt attaagaaaa aaataccggt gatagttgcc aatgatgttt caatcgcgat
     1141 gggcaaaccg accaaccgga ttaccattat cggggacgac ggggaactat cttttcccga
     1201 aacaagtaaa gatgaagcgg cgatgcagat tgttgaaagg cttgccgtat atttgaacaa
     1261 ataagcaatt gaacggataa accataaagc gggttgcctg ttaatcaaaa gacaacccgt
     1321 tttacctgct tcaacttctg atgactttgc ggatatatgg aatactatgc agattttgaa
     1381 taatctgatt caattgattc agattcttga ctttcaataa gaatttgaat tcgacaaaac
     1441 cttccgttcc cgactgggat ttagacggtg tttcgaccga ctcaatgtcc gcaccggaat
     1501 cggaaatcgc ttgcgccatt aatgccaaca ggccgtggct gtcttccgat tggacttgaa
     1561 gcccgacacg gtagttctgc ccgttcatat tttcccagtc tgcatccagc tgctgttcgg
     1621 gatcggactt caacaacgtc gggcaggtat ccctatggat aatcatgcct tttcccttaa
     1681 ccaacagcaa acggatggaa tcaccgggaa cagggtggca gcactctgca aaatgaatat
     1741 gcccgctttc ctgaccatcg actttaatgg aactgagcct gacctcgcta ccgaaatgct
     1801 cccctgccaa ctcggcaatg tgcatggcga cataaacagg cagggtatgc cccataccga
     1861 cgttgtacag cacttcctca aatgaagtct gtttgtcgtt gagatcggca aggtattttt
     1921 ctttgatgcc gtctgaaagc aggacatctt tgggcagcaa actggacagg gctttttgta
     1981 agaggctctc tcccaaaacg accgcatcgt gccggttaag gtttttaata tattggcgta
     2041 tggcactgcg cgccctgccg gacacggcga aattcaacca cgcgggattg ggtttggcat
     2101 gttcggatgt aataatttcg acggaatcgc cggttttgag cttcgtacgc aacggcatca
     2161 tgatattgtt gatacgtgcg gcaacggttt tgtgcccgat atcggtatgc accgcataag
     2221 caaaatcgac aggcgttgcc cctttgggca aagttaggat ttttcctttt ggcgtaagga
     2281 tgtagatttc gttcggaaac aaatcgactt tgacgtgttc gagaaactca atggcattgg
     2341 cactgcttgc ctgcaaatct aagatatttt tcagccaccg gtttgtgtga agcaccgcct
     2401 gatcgaccgt cttagaatat gatttatagc tccaatgtcc ggcgataccg ccttcggcaa
     2461 cagcatccat ttccttggta cgtatctgaa cttcaatcgg caagccgtaa ggaccgacca
     2521 aagtagtatg caggctttga taaccgttgc ttttcggaat ggcgatgtag tctttgaacc
     2581 gcccgggctt gggctgatag agggtatgca atgcgccgag tgcggcataa caggctggaa
     2641 tactgttgac aatgacgcgg aaaccgtaaa tatccataac ttcggcaaag cgcagctttt
     2701 tcgccatcat tttctgatgg atgccgtaca ggtttttttc cctgcctttg attttggcct
     2761 ctatattcgc gcctaccagc ctctgaccga atgcgcgcaa gactttgccg acaacgtcct
     2821 gccggttctt ccggctcttg tccattgctt tttttaaagt ctcatagcgg ttgggatgaa
     2881 ggttttggaa cgataaatcc tgaagctccc gatacgcatt attcagacct atgcggttgg
     2941 caatctgcgc gtagatttcg agggtttccc ttgcaatccg gcggcgtttg tccgggcgca
     3001 tcgaaccgag cgtccgcata ttgtgcaggc ggtcggcaag tttgacgaca atcacgcgca
     3061 catctttggt cattgccaaa atcagtttgc ggaaactctc cgcctgatgc tctgcatgat
     3121 cttcaaattt gagtttttcg agtttggaca gcccgtccac catctcggca atcgtattgc
     3181 cgaacaccgc cgccatttcc ccttttgtca cgcccgtatc ttccaatacg tcgtgcatta
     3241 cacctgcaca aagaccctgt acgtccatat gccaaaccgc aagctgtgtc gcaacggcaa
     3301 tcggatgcgt aatgtatggt tcgccacttt tgcgggtttg cccgtcgtgg gcgcgaaacg
     3361 cataggcgac ggctttttca agctccgcct gttcctcggg cttgaggtag gaggctgtat
     3421 ggaaaagcag ggtacgcgct tcggcggtca gagggtcgta aggtgcggtg ggttgaggga
     3481 caggcatttc agacggcttt cggaacatat tttatttttc gtttcaaacc gtcggactgc
     3541 acggcggcag aatgtgccga cgtgcgtttc cggcagaatt tatttattgc gcgtcaacag
     3601 ttccgtaccg atatgcccgg cggcgatttc ccttaaggcg gtaacggtcg gtttgttatt
     3661 gcggacatcg tccacaagcg gcgtgttgcc gttctcaagc tggcgggcgc ggcgggccgc
     3721 taccaatgtc aggtcaaaat ggttggaaat ttttccggta cagtcttcgg tggtaatacg
     3781 tgccatatta tttgctttct ttcaaaaata tttaaattgg gaaaccgagt attttcgcgg
     3841 ttttttagga attttccaac aaatctgcaa taaatcccag ttgccgcgac cttttcagac
     3901 ggcaggcatt cacaatatga accaaatcct cctccgcccg cgccaagtcg tcattgacca
     3961 cgacaaagtc gaacaatacg gactgttcga tttcatgcct tgccttcgca agcctccttt
     4021 ggataacttc ccgactgtcc gtcccgcgtc cgttgagacg cgcggcaagc acatcgaaag
     4081 aaggcggcag gataaagata ccgacggctt cgggcagcgc atctcgaacc tgcgccgcgc
     4141 cctgaacgtc gatttccaaa atcacgtcat agcctgccgc cgccaacgca ttcacgccct
     4201 ccgcgcttgt gccgtaatag ttgccgaata cgtctgcgta ttccaaaaaa gcttcctgcg
     4261 cgataagcga ctcaaactct tctttggaaa caaagtgata atgtacgccg tttgcttcgc
     4321 cttcacgcgg cgggcgcgtc gtatgcgata cggaaacgcg caaaccgtta tggtttgcca
     4381 acagccgcga caccagcgtg gttttgcccg tgccggaagc ggccgaaatg ataaagatgt
     4441 tgccttttcg ataagcggac atatttttta cctgtatatt ttccagccga ttgtatcaca
     4501 atggacaccc agtttcctat ttgccgatgc ccatattttg ccgctattgt tttgattgat
     4561 ttggcaagcg gcaggctgac ggctacaata tggcgttaaa aacatcaaac ttggaacacg
     4621 caatgctggt tcatcccgaa gctatgagtg tcggcgcgct tgccgacaaa atccgcaaaa
     4681 tcgaaaactg gccgcaaaaa ggcatcttat tccacgacat cacgcccgtc ctgcaaagcg
     4741 cggaatactt ccgccttttg gttgatttat tggtttaccg ctatatggat cagaaaatca
     4801 acatcgttgc cggtttggac gcgcgcggct tcattatcgg cgcggcactc gcctaccatc
     4861 tcaacgtcgg ttttgtcccc atccgcaaaa aaggcaagtt gccttttgaa accgtatcgc
     4921 aaagctacgc gctcgaatac ggggaagctg cggtggaaat ccacaccgat gccgtcaaac
     4981 ccggttcgcg cgtgctgctg gtcgatgatt tggttgccac gggcggcacg atgcttgccg
     5041 gactggagct gatccgcaaa ctcggcgggg aaattgtcga agctgccgcc attttggaat
     5101 ttaccgacct tcaaggcggc aagaatatcc gtgcaagcgg cgcgccctta tttaccctgc
     5161 ttcaaaacga aggctgtatg aagggctgaa aaccgaccct gccgtctgaa accggcaggg
     5221 ttgttatgat gcgttcaaat cacgcccaaa tcttgcaagc ctctcaacac gccgtcttca
     5281 tcaacgccgg ggcaaacata tttcgccgct tctttcgccg cctgttcccc gttgcccatt
     5341 gccacgccga acccgacttc agacagcatt tccacatcgt tcaaaccatc gccgaacgcc
     5401 atcacgtccg ccatttccaa acccaatgct tcaaccacgc ttctgatgcc gtctgttttc
     5461 gacgcaccgg ccggcagcag atcgaccgct tcctcgtgcc agcgcaccgt tttcaagcct
     5521 tcccgtttca caatatccga ccagggcggc atttcgtttt cctccgcaaa caccagcatc
     5581 tgatacaccg gtttgcttga aaaataatcc ttatcggcaa aaaaatcgct ggcgatatgc
     5641 ttcaaggcgc ggcacacgca ttccgacagt gcggacaccg caatcccctc tccgccgaca
     5701 aacgcataat ccatacccaa gccatccaaa tgcgcgcaaa ccctgcccat caaaccggca
     5761 tccatcggta cttcgcgcac agtttttccg tgcagcagcg caaactgccc gtttatcgtt
     5821 accacggcat ccatacccgt ttccgccatc atgtccctga ccttttcggg tatcgtcgcc
     5881 aaagaccgcc ccgtcgccaa cgccgtcaat atacctttgc cgcgcaaagc cgccaccgcc
     5941 gttttcacgg aaggacgcaa ggtatccgta tattttcggt acagcgtatc gtcaatatcg
     6001 aaaaacacga ttttaggatt catcacattc tctctcgcat tcaaacagcc gcattgtatc
     6061 ccaagcaggc aaatacttga taaatcctta taaatttccc ggcaaaattg accacggaca
     6121 cgaaaaggcg gataatccgc ccatcttcaa acacccttca gacggcattt gcagcaatgc
     6181 cgtctgaaac atttttacaa agcatacaaa tcatgaaagc acccgaactc ttattgccag
     6241 caggcggtct cgaacgtatg cgcgccgcct acgactacgg cgcagatgcc gtttacgccg
     6301 gcagcccgcg ttattccctg cgcgcccgca acaacgaatt tgccaaactt gatgttttag
     6361 aacaaggcat taaagaagcg cacgagcgca acaaaaaatt ctttttgacc gtcaacaccc
     6421 tgccgcacaa ttccaaactc aaaacctttg tttccgatat ggagccgctg attgcgatga
     6481 agcccgacgc gctgattatg gcggatccgg gcttgattat gaccgtgcgc gaaaaatggc
     6541 cggaaatgcc gatccacctg tccgtacagg cgaacaccac caactactgg ggcgtgaaat
     6601 tctggcagaa catcggcgtc gaacgcatta ttctgtcacg cgaattgagt atggaagaaa
     6661 tcgccgaaat ccgccaacaa tgccccgaca tcgaactcga agtcttcatc cacggcgcat
     6721 tgtgcatcgc ctactccggc cgctgcctgt tgtcgggcta tttcaaccac cgcgacccca
     6781 accaaggcac ctgcaccaat tcctgccgtt gggactacaa agtccacaac gctacggaaa
     6841 gtgatgcagg cgatgcccag cttctgcaag gttttaactt tgaaaaagcc caagaagaag
     6901 ccaaccaaaa ctttgaaggc atcaacggtc aaaaacgcca tccctacgcc gacaaagttt
     6961 tcctgattga agaatccaac cgtccgggcg aaatgatgcc gattatggaa gacgaacacg
     7021 gcacctacat catgaattcc aaagaccttc gcggcattga agtggttgag aaactcgcca
     7081 aaatcggcgt ggacagcctc aaagtcgaag gccgcaccaa gtcgctctat tatgtcgcac
     7141 gcgtcgccca atcctaccgc aaagcgattg acgatgccgt cgcaggccgt ccgtttgatt
     7201 acagcctgtt gagcgaactc gaaggccttg ccaaccgcgg ctacaccagc ggcttcctcg
     7261 agcgccacca aacccaagac tatcaaaact acctcagcgg ccattccacc gccaaacaaa
     7321 gccaatacgt cggccacgtt accgaaatcg acgaaaacgg ctgggcgacc atcgaagtca
     7381 aaaaccgctt cgccgtcggc gattcgctcg aaatcatcca cccgagcggc aaccaaacca
     7441 tcaaattgga acaaatgacc cgcaaaggcc agcctgtcga tgtcgcaccc ggcaacggca
     7501 tccaagtcaa aatccccaat atgcagggca aagaaaaagc cctcatcgca cgcgtgttga
     7561 acccctaagc cattatgccg tctgaaaccc gttttcagac ggcattttgt tgaatcttac
     7621 ggtacaatgc taatgatttc ccaccgcaag taaggatatc cgacatgaaa aaaaatcctc
     7681 atactctccg ccgccgccct gatgctggca gtctgccaat ccggcagcgc acctaaaaac
     7741 gcgcacacgg catccgccgg cacaccggcc ggagaatcat gcaaagttat ccgtggagac
     7801 accacaggaa gcgacaaaaa catcatttac cgttgcagca acggtcaggc ggcaataaat
     7861 gcagccaccg ccgccagcgt attggaatca gggatccccg tcagcttcgg cggcgggggc
     7921 gtaccggttg caaacggcag gaatctggtt acacggcaag cagcaaacgg cgtaggcaaa
     7981 tccgactcag aggcctgcga acgcgcccta atcaatgccg cccgaaaatt ccagcagacc
     8041 gccggcaaac tcggcgggcg ccgtgttacc ggcttccaga gctacttcga caagcagccg
     8101 ctgcaaggcg gacaatacga ctgtcaggca ggctcgttcc acgtccgcgt ggtcatgcgc
     8161 gccaacgtcg tccgttaaca tatcggcaac caaaaaatgc cgtctgaaac atttttcaga
     8221 cggcattttt aatcctgcaa cattaccccc tgcctgagtt cggatactgt atcaatataa
     8281 aaccccatca cacagattta cggtaaaaag ccgtccgaat gaattcttga acacaattcg
     8341 gacggcttta attttcaaca agacgattaa ttcaataata ccagattaaa acttccattc
     8401 cagcgatacg gcgtaattac ggcttggggc gcggtagcgg tctaagcctt tgccatcgcg
     8461 gtcgaccgag ttggtggtgc tgtagctata caggccgcgc aaggaatccc aagtggtgta
     8521 tttgcggttg aacaggttgt acacgcccgc acgcagggtc aggtttttca ccggtttgta
     8581 gaagccgtac atatcgaaca cataagccga cttgttcagc cacgggtaat cttttacctt
     8641 tttctgcaaa ggcgtacccc agcccttgtt ttcataaacg gtgtattgcg cgtctttgac
     8701 ctttttcgcg cccagatagg tcaggcggga gaacacgccc catttttcgc tcggactttc
     8761 atagtcgata ccggcaatca ctttcaacgg ctgtgtggac agcaggctgt tgtcgcccga
     8821 cagtttgctt ttcgcataac ccagcgagcc gaacagtttc cagccctcag gaacaaaaga
     8881 cgctactttg tccacattca gacggcctgt cagctcgata ccgcggattc tggccttgtc
     8941 gatattttgc atctgccatt ccagtttttc ggaataagga ttgctacaca taccgtagta
     9001 gtaattcatc tgagtacagc tgacatcgcc gctggtggtc agcttctgct cttcagacag
     9061 gaaattgcgg taattgcttt gatacaggtt ggcatccaaa gtaccttttt cgctgcggcc
     9121 ttgcagagag agggtgtggg tggtgctgcg ctcggctttc aggttgggat tgggcagcca
     9181 attacccgaa ccgtggttgt aagtgaaata cacttcggac gcattgggta cgcgatagcc
     9241 ggaagtgatg tcgtaaccga cacgccaagc ctgattcagt tgtgcagcca agccgacaaa
     9301 accgctccag cctttataag tgttggctgc aggcggtgtt ttgtcacaag catgacactc
     9361 ggcattcaat tcctgaggcg tcattttggt gtggtcataa cggatacctg cgcggctact
     9421 gaacacgtcg ttccattgga tttggtcaga cagtgagaaa ccgtagttgg tggttttcac
     9481 cggatgctgg atggtgctgg ctgttcggac gatgcggccg ctgaagaaat aatcgtcgcg
     9541 gtttaggttt tcaaaatcac ggcggctggc gaaagtttta aacgacaggc ggtgtcgccc
     9601 ccccccgagt tgcaacggat ggctgtccaa acgcaaagta aaacgtttga attgggtgtc
     9661 catgctgcgg ttgtatattt cgtccaaatc cttctgatta tagttgcgcg tccaggtgga
     9721 ataatccatc ggaaacgagc ctttgttgtt aaccgccgcc actttggttt tctgataatc
     9781 gaagtccgcc ttcaaagacg acaaccaatt tgaatcaggc gtccattcgt aaaagaggtt
     9841 ggcattgcgc cgtctgttta cgtcatcggc ttcgcgccag gaagaagcgg tcaggttata
     9901 agactcttca accgtgtaat tatgcccctg ctggccgtta agcgatgcgc cgatgcggtg
     9961 gttgtcgttg atttgataag caatcttacc caagaagttg tggtatttgt gttgggacgg
    10021 atcagggata ccgcgtgccg aaccacggat attcgcgcca ctgccttccc cttccacagc
    10081 atagcctcgg tttcccgcac tttcggtttc atgaccgcga cgttgcgaat acagcaaagc
    10141 agcatccacg cggtcgttgt tcaaaccgaa cccaagtgta tttgtccatt cacggttacg
    10201 cgtgctgtaa ccgtttttca tcattactcc gaactgcctt tcaggcaaca gtaagtcacg
    10261 tccttgcagg gtttggtaat tcacaccgcc gcccaatgcg ccgctgccgg tattgaaaga
    10321 gtctgcgccc ttcacgattt cgatgttgcg cacgagttcg gggtcgatag acaaacgcga
    10381 gctgttgaag ttgccataac gggcgtacag cgagttttct tcagaatcag gcagatttac
    10441 gccgtctatg ctcacgccga cacggttgcc ttccacgccg cgaacggcaa agcctttttg
    10501 atggcggccg ctgtcgctca agccgacatc ggtggaatag cgcaccaagt ctttattgtc
    10561 gcgtatcatt tcttgtttga tacggcctag gttaacacgt tccacagccg caggcgcatt
    10621 gcgctggcct ttaacgcgca ctgcttttac ctctgcctta acgggtgtgg tttcagttgc
    10681 agcttcatct gccgcaaaga ccggattgcc gaaaatactg ccgaccagcg cggcgatagg
    10741 gagcatttgt aatggtttca tattatcaac tcaagatgta tggattgttc atcctcggtt
    10801 agcgcataat agattttctg ataatcatta atatttaata agacagtagt ccgtgcaaac
    10861 aaagccgcgc cgtgtaaata aaggcccctg caaacagcta tgccgagacc ttgtttattt
    10921 gattcgatta ttttttagtg cctgtgcggc atcatacctt cgggggcttc ggcatcggct
    10981 gccaaaccga aggtttcgcg caacacgact ttgtagaatg caaaggcttc gcgcgcgcct
    11041 tggatggctt ccgcttcggc ttccggagtc aagttcaagg cgttcagatg ctcgacgaag
    11101 gcgcgccagt gtttaccgcg accgtcggga tggggggcga ggtggcgcgc gccgtgttcg
    11161 ccgttgtaat cgagtttttg cgcgtgcttg aacaaaaacg ccgcacccaa attagaacct
    11221 tcggcgcaat aaagccagcc gattgctttg ttgccggttt cgtgtggcaa ttctttgtcg
    11281 aatttgtaag gctcttcgcc caagtctttc aagtcttgcg ttacggcatc gtatcgcgcc
    11341 atgtattcca gctcgggaat ggctttgttt aattcggcat ctttatagat gtggtcgacg
    11401 gccttgtgga aaacggattg gagtttcaaa aatttaatgt agttttcttt gctgacaaac
    11461 ggttcgacag acataacgag attatccacg ctgtcgtgaa ccgccgtggt atctgctttc
    11521 aagcgtttgg caaacgtcag ggcttgattt tcggtttcgc tcatagcttt tcctttgtcg
    11581 gtaagggata aggatgcggg gcgggcaaaa tccgcacttg cccgca
//
LOCUS       DAWGNT010000048        11576 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.048, whole genome shotgun sequence.
ACCESSION   DAWGNT010000048 DAWGNT010000000
VERSION     DAWGNT010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11576
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.048"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..4113)
                     /gene="hrpA"
                     /locus_tag="WHR98_000931"
     CDS             complement(<1..4113)
                     /gene="hrpA"
                     /locus_tag="WHR98_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-partner secretion exoprotein HrpA"
                     /protein_id="HEZ2307629.1"
                     /translation="MNKGLHRIIFSKKHSTMVAVAETANSQGKGKQAGSSVSVSLKTS
                     GDLCGKLKTTLKTLVCSLVSLSMVLPAHAQITTDKSAPKNQQVVILKTNTGAPLVNIQ
                     TPNGRGLSHNRYTQFDVDNKGAVLNNDRNNNPFVVKGSAQLILNEVRGTASKLNGIVT
                     VGGQKADVIIANPNGITVNGGGFKNVGRGILTTGAPQIGKDGALTGFDVRQGTLTVGA
                     AGWNDKGEADYTGVLARAVALQGKLQGKNLAVSTGPQKVDYASGEISAGTAAGTKPTI
                     ALDTAALGGMYADSITLIANEKGVGVKNAGTLEAAKQLIVTSSGRIENSGRIATTADG
                     TEASPTYLSIETTEKGAAGTFISNDGRIESKGLLVIDTGEDIGLRNGAVVQNNGNRPA
                     ATVLNAGRNLVIESKANVNNAKGSTNLSTGGRTVIKEASIQTGTTVYSSSKGNAELGN
                     NTRITGADVTVLSNGTISSSAVIDAKDTAHIEAGKPLSLEASTVTSDIRLNGGSIKGG
                     KQLALLADDNITAKTTNLNTPGNLYVHTGKDLNLNVDKDLSAASIHLKSDNAAHITGT
                     SKTLTASKDMGVEAGSLNVTNTNLRTNSGNLHIQAAKGNIQLRNTKLNAAKALETTAL
                     QGNIVSDGLHAVSADGHVSLLANGNADFTGHNTLTAKADVNAGSVGKGRLKADNTNIT
                     SSSGDITLVAGNGIQLGDGKQRNSINGKHISIKNNGGNADLKNLNVHAKSGALNIHSD
                     RALSIENTKLESTHNTHLNAQHERVTLNQVDAYAHRHLSITGSQIWQNDKLPSANKLV
                     ANGVLALNARYSQIADNTTLRAGAINLTAGTALVKRGNINWSTVSTKTLEDNAELKPL
                     AGRLNIEAGSGTLTIEPANRISAHTDLSIKTGGKLLLSAKGGNAGAPSAQVSSLEAKG
                     NIRLVTGETDLRGSKITAGKNLVVATTKGKLNIEAVNNSFSNYFPTQKAAELNQKSKE
                     LEQQIAQLKKSSPKSKLIPTLQEERDRLAFYIQAINKEVKGKKPKGKEYLQAKLSAQN
                     IDLISAQGIEISGSDITASKKLNLHAAGVLPKAADSEAAAILIDGITDQYEIGKPTYK
                     SHYDKAALNKPSRLTGRTGVSIHAAAALDDARIIIGASEIKAPSGSIDIKAHSDIVLE
                     AGQNDAYTFLKTKGKSGKIIRKTKFTSTRDHLIMPAPVELTANGITLQAGGNIEANTT
                     RFNAPAGKVTLVAGEELQLLAEEGIHKHELDVQKSRRFIGIKVGKSNYSKNELNETKL
                     PVRVVAQTAATRSGWDTVLEGTEFKTTLAGADIQAGVGEKARADAKIILKGIVNRIQS
                     EEKLETNSTVWQKQAGRGSTIETLKLPSFESPTPPKLTAPGGYIVDIPKGN"
     gene            complement(4222..5964)
                     /gene="hrpB"
                     /locus_tag="WHR98_000932"
     CDS             complement(4222..5964)
                     /gene="hrpB"
                     /locus_tag="WHR98_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-partner secretion system transporter HrpB"
                     /protein_id="HEZ2307630.1"
                     /translation="MKFFPAPCLLVILAVIPLKTLAADENDAELIRSMQRQQHIDAEL
                     LTDANVRFEQPLEKNNYVLSEDETPCTRVNYISLDDKTARKFSFLPSVLMKETAFKTG
                     MCLGSNNLSRLQKAAQQILIVRGYLTSQAIIQPQNMDSGILKLRVSAGEIGDIRYEEK
                     RDGKSAEGSISAFNNKFPLYRNKILNLRDVEQGLENLRRLSSVKTDIQIIPSEEEGKS
                     DLQIKWQQNKPIRFSIGIDDAGGKTTGKYQGNVALSFDNPLGLSDLFYVSYGRGLAHK
                     TDLTDATGTETASGSRSYSVHYSVPVKKWLFSFNHNGHRYHEATEGYSVNYDYNGKQY
                     QSSLAAERMLWRNRLHKTSVGMKLWTRQTYKYIDDAEIEVQRRRSAGWEAELRHRAYL
                     NRWQLDGKLSYKRGTGMRQSMPAPEENGGGTIPGTSRMKIITAGLDAAAPFMLGKQQF
                     FYATAIQAQWNKTPLVAQDKLSIGSRYTVRGFDGEQSLFGERGFYWQNTLTWYFHPNH
                     QFYLGADYGRVSGESAQYVSGKQLMGAVVGFRGGHKVGGMFAYDLFAGKPLHKPKGFQ
                     TTNTVYGFNLNYSF"
     gene            complement(6025..6264)
                     /locus_tag="WHR98_000933"
     CDS             complement(6025..6264)
                     /locus_tag="WHR98_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEZ2307631.1"
                     /translation="MPHLQNLSLGLKKKLPVILQTEISECGLACLAAVAGFHGFHTNL
                     RALRSKYCPRPLQNSPKSPKCLGGNFGEFCKGLIL"
     gene            complement(6548..6850)
                     /locus_tag="WHR98_000934"
     CDS             complement(6548..6850)
                     /locus_tag="WHR98_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307632.1"
                     /translation="MTWVGGSGNAQQSSYYCEICESAGLNDTGNPDKSLGLPNNTFSN
                     PPGWGATIGALAGSRIGMPEFGTFASHAIENFDWSWYRRYREIAETIEREYSGGLP"
     gene            complement(7178..7378)
                     /locus_tag="WHR98_000935"
     CDS             complement(7178..7378)
                     /locus_tag="WHR98_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307633.1"
                     /translation="MVSSDLAKSNEPVYLVKIKPDKPTITAYGEEKPLQIGMTLEADI
                     LHEKRRLYEWVLEPIYSISGKL"
     gene            complement(7330..7956)
                     /locus_tag="WHR98_000936"
                     /pseudo
     CDS             complement(7330..7956)
                     /locus_tag="WHR98_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246842.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein"
     gene            complement(8017..8370)
                     /locus_tag="WHR98_000937"
     CDS             complement(8017..8370)
                     /locus_tag="WHR98_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307634.1"
                     /translation="MIELQLHELKLVSGGGPVTDNIAGNVANAATTKGGPTWGDLVAI
                     PAAAAAVYYLPKNAYGAAGANGVYNVTRDWVNDAVNAPPYNGRPIFEIEHGLTAPATK
                     ADKSGNGYTDGTDYC"
     gene            complement(8599..9747)
                     /locus_tag="WHR98_000938"
                     /pseudo
     CDS             complement(8599..9747)
                     /locus_tag="WHR98_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704893.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
     gene            10108..10389
                     /locus_tag="WHR98_000939"
     CDS             10108..10389
                     /locus_tag="WHR98_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307635.1"
                     /translation="MKTLVLLLLSFSTTTAFAAYGLGLGQAPKYPADFRAYGYVYSGR
                     QGWVLKTEADAIKLDTLFKRFVYRPSAANQNPVGQRSDGIPANHTKEKP"
     gene            10386..11429
                     /locus_tag="WHR98_000940"
     CDS             10386..11429
                     /locus_tag="WHR98_000940"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEZ2307636.1"
                     /translation="MSKKIKVGIVGATGYTGVELLRLLAAHPDVEVAAVTSRSEAGTA
                     VADYFPSLRGVYGLAFQTPDEAGLEQCDIVFFATPNGIAMKDALRLLEQGVRVIDLSA
                     DFRIRDIPTWEHWYGMTHAAPGLVSQAVYGLSELNREAVAQARLVANPGCYPTCVSLP
                     LVPLLRQCRLKPGMPLIADCKSGVSGAGRKGNVGSLLCEAGDNFKAYGIAGHRHLPEI
                     RQTIAGLQDGIAEGFVFTPHLAPMIRGMHATVYLHLSDGSNPETVLRDYYRDSLFVDI
                     LPAGSTPETRSVRGANLCRISIQQAAQSDVWVVLSVIDNLVKGAAGQAVQNMNIMFGL
                     KETHGLDAIPLLP"
BASE COUNT         2789 a         2767 c         2718 g         3302 t
ORIGIN      
        1 attgcctttc ggaatgtcga cgatatagcc accgggggcg gtcagtttgg gcggagtagg
       61 gctttcgaag ctgggcagtt tcagcgtttc gatagtgctg ccgcgtccgg cctgtttctg
      121 ccatacggtt gagttggttt ctaatttttc ttccgactgg atacggttca caatgccttt
      181 gaggataatt ttcgcatcgg cacgggcttt ttcgcctaca cctgcctgaa tgtccgcacc
      241 ggccagcgtg gttttgaatt cggtaccttc gagcacggta tcccagcctg aacgggtggc
      301 tgcagtttgg gcgacgacgc ggacaggcaa tttggtttcg ttcagttcgt ttttactgta
      361 attgctcttg cctaccttga tgccgataaa gcggcggctt ttttggacat ccaactcgtg
      421 cttgtggatg ccttcttctg ccagcagttg cagctcttca cccgcaacca gggtaacttt
      481 acctgcaggg gcattgaagc gggtggtatt agcttcgatg ttgccgcctg cctgaagcgt
      541 tatgccgttg gcggtcagct cgacgggggc tggcataatc aggtggtcgc gggtgctggt
      601 aaacttggtt tttctgatga ttttgccgct tttacctttg gtttttaaga aggtataggc
      661 atcgttttgt ccagcctcca gtacaatatc actatgggct ttgatgtcta tgctgcctga
      721 gggagctttg atttcggatg caccgataat aatacgtgca tcatcgagtg ccgcagctgc
      781 atgaatactt acccccgtac gtccggtcaa acgtgaaggc ttgttcagag cagctttgtc
      841 gtagtgactc ttgtaggtgg gcttgccaat ttcatattgg tcggttatgc cgtcaatcag
      901 aatagcagcc gcctctgaat ctgctgcctt tggcaatacg cctgcggcgt gaaggttcag
      961 ttttttggaa gcggtaatat cggaaccgct gatttcgatg ccttgtgcgg aaatcaagtc
     1021 aatattttgt gcagaaagct tggcttgcag gtattctttg cctttgggtt ttttaccttt
     1081 aacttccttg ttgatggctt gaatatagaa agcgagacgg tcgcgttctt cttgcagggt
     1141 tggaatcagc ttgcttttag gcgagctttt tttcaactgc gcaatctgct gttccaattc
     1201 tttggatttt tggttgagtt cagccgcttt ttgtgtagga aaataattgc tgaatgagtt
     1261 gtttacggct tcgatattca acttgccttt ggtggtggcg acaaccaagt ttttaccggc
     1321 tgtaatttta gaacctctta aatctgtttc tcctgtaacc agacggatat tgccttttgc
     1381 ttccaatgag gaaacttgag cactaggcgc acctgcattt cctccttttg cagacaacag
     1441 caattttccg cctgttttga tgctcaggtc ggtatgcgca ctgatgcggt tggcaggttc
     1501 gatggttaat gtgccgctac ctgcttcaat attcagccgt ccggccaatg gttttaattc
     1561 ggcattatct tccaaagttt tggtcgaaac ggtactccaa ttgatgttgc cgcgcttgac
     1621 tagggcggta ccggcagtaa ggttgattgc acccgctctc agcgtggtgt tgtcggcaat
     1681 ttgggaatag cgcgcattga gtgccaatac accgttagcc accagcttgt tggcagaagg
     1741 cagtttgtcg ttttgccaaa tctggctgcc ggtaatgctt agatgacggt gtgcgtaggc
     1801 atctacttgg ttgagcgtta cccgctcgtg ttgtgcatta agatgcgtat tatgggtaga
     1861 ctccagcttg gtattttcta tgctcaatgc ccggtcggaa tgaatgttca atgccccgct
     1921 tttggcatgg acgttaaggt tttttaagtc ggcattacca ccgttgtttt tgatgctgat
     1981 gtgttttccg ttgattgaat tgcgttgttt tccgtcacca agctgaatac cgttgccggc
     2041 aaccaacgta atatctcctg aagatgaagt gatattggta ttgtctgctt tcagacggcc
     2101 tttaccaacc gatcctgcat tgacatcggc cttggctgtc agggtattgt gaccggtaaa
     2161 gtcggcatta ccgttggcca ataaggatac atgaccgtct gcagaaacag catgaaggcc
     2221 gtctgaaacg atattgccct gcaatgcggt ggtttcgaga gccttggctg cgttcagctt
     2281 ggtattgcga agctgaatat tgcctttggc tgcctgaatg tgcagattac ccgagttggt
     2341 acgcagattg gtattggtaa cattcagcga gcctgcctcc acacccatgt cttttgaggc
     2401 agtgagggtt ttactggtgc cggtaatatg ggcagcgtta tccgatttca aatggatgct
     2461 ggcggcagac aaatctttat caacattcaa attcagatct ttacctgtat gaacatacag
     2521 attgccggga gtattcagat tggtagtttt ggcagtaatg ttatcgtctg ccagtaaagc
     2581 aagctgcttg ccgcccttga tactgcctcc gtttaagcgg atatcggagg taactgttga
     2641 agcttccaaa gaaagcggtt tgcctgcttc gatgtgtgcg gtgtctttgg catctattac
     2701 ggcggaactg ctgatggtgc cgttggataa tacggtaaca tctgccccgg taatgcgtgt
     2761 gttattgcct aattcggcgt tgcctttgct ggaactgtat acggtagtgc cagtctgaat
     2821 actggcctcc ttgatgacgg tacggccgcc ggtcgacaga ttggtcgaac ctttagcatt
     2881 gttcacattt gctttgcttt cgataaccaa attacggccg gcatttaata ccgtagcagc
     2941 agggcggttg ccgttgtttt gaacgaccgc tccgttacgc aaaccgatgt cctccccggt
     3001 atcaataacc aataagcctt tgctctcgat ccgaccatca ttggagataa atgtgcctgc
     3061 cgctcctttt tcggtggttt cgatggagag ataagtcggt gaagcttcgg tgccgtcggc
     3121 agtggtggcg atgcggccgc tgttttcaat gcggcctgac gaagtcacaa tcaattgctt
     3181 ggccgcttcg agtgtgccgg catttttgac gcctacgcct ttttcattgg caatcagtgt
     3241 gatgctgtcg gcgtacatac cgcccagtgc ggcagtatca agggcaatag tcggtttcgt
     3301 acccgctgcc gtacctgcac tgatttcgcc gctggcgtaa tctactttct gaggaccggt
     3361 agaaaccgcc aggtttttac cctgtaattt cccctgcaaa gcaactgcac gagcaagtac
     3421 cccggtgtag tcggcttcgc ctttatcatt ccaacctgct gctcctacgg tcaatgtgcc
     3481 ttgacgcaca tcaaatcctg tcagtgcacc gtctttgccg atttggggcg caccggtagt
     3541 taagatgccc cgaccgacat ttttaaagcc gccgccatta acggtaatgc cgttggggtt
     3601 ggcaataatc acgtcggcct tttgaccgcc tacggtaacg atgccgttga gtttgctagc
     3661 cgtaccgcgt acctcgttca aaatcaattg cgcactgcct ttgaccacaa acggattatt
     3721 gttacggtcg ttgtttaaca ctgccccttt gttgtcaaca tcaaactgcg tatagcggtt
     3781 gtggctcaat ccgcgtccat tcggagtttg gatattcacc aagggggcac cagtgttggt
     3841 tttaaggata acgacctgct ggtttttagg tgctgatttg tcggtggtaa tttgggcatg
     3901 ggcaggcaat accatactca gggaaaccaa agagcagacc aaagttttaa gggtggtttt
     3961 gagtttgccg caaaggtcgc ctgaagtttt cagtgaaaca gaaaccgaac tgcctgcctg
     4021 tttacctttg ccctggctgt tggcagtttc ggctactgca accatggtgc tgtgcttttt
     4081 actaaagata atgcgatgta aacctttatt catgtctatt ccattttgaa gatgaacgta
     4141 ctgcgcgcca agtacgtagg taaagtttga cggtctgagg ataaggaaag accgtctaaa
     4201 tatcagtaaa aaattcagag gttagaaact gtaattcaag ttgaagccgt aaacggtgtt
     4261 ggtcgtctga aagcctttgg gtttatgaag cggcttgccg gcaaacagat cataagcaaa
     4321 cataccgcct actttatgcc ctcctctgaa gccgaccact gcacccatca gctgcttgcc
     4381 cgatacatat tgtgcacttt cgccagatac gcggccatag tccgcaccga gatagaactg
     4441 atggttcgga tgaaaatacc aagttaaagt attctgccag tagaaacctc gctctccgaa
     4501 aagactctgc tccccatcaa atccgcgaac ggtgtagcgg ctgccgattg acaatttatc
     4561 ttgggcaacc aacggcgttt tgttccattg agcttgaatg gcggttgcgt agaaaaactg
     4621 ctgtttgccc aacataaacg gggccgctgc atccaatccg gcggttatga ttttcatacg
     4681 ggatgtgcct ggaatagtac cgccgccgtt ttcttcaggt gcgggcatac tttggcgcat
     4741 accggtcccg cgtttgtaag acaacttgcc gtcaagctgc caacggttga ggtaagcacg
     4801 gtggcgcaat tcggcttccc agcctgcaga gcggcggcgt tgcacttcga tttcggcatc
     4861 gtcgatgtat ttataggttt ggcgtgtcca taatttcatt ccgactgaag ttttatgaag
     4921 tctgttacgc caaagcatgc gctcggcggc caagctgctc tgatattgtt tgccgttgta
     4981 atcgtaattg acggaatagc cttcggttgc ttcgtggtaa cgatgtccat tgtgattaaa
     5041 agaaaacagc cattttttta cgggcaccga ataatgcacg ctgtaacttc tggatccgct
     5101 tgcagtttcc gtaccggtgg catcagtcaa gtccgttttg tgcgccaaac cgcgtccata
     5161 tgaaacataa aacaaatcgc ttaagcccaa agggttatcg aacgataaag cgacatttcc
     5221 ttgatatttg ccggtcgttt tgccgcccgc atcatctata ccgatactga accgtatggg
     5281 tttattctgc tgccatttga tctgtaaatc gcttttgcct tcttcttcgg acggtataat
     5341 ctgaatatct gttttaacac tcgacaaacg acgcaggttt tccaagccct gctctacatc
     5401 gcgaagattg agaattttgt tcctatataa gggaaatttg ttattgaatg cactaatact
     5461 gccttcggca gacttcccat cccgtttttc ttcatagcgg atatccccta tttcgcctgc
     5521 tgatacccgt aatttcagaa ttcccgaatc catattctgt ggttggataa tagcttggga
     5581 agtgaggtag ccacgcacga tcagtatctg ttgcgcggct ttttgtagcc tgctcaaatt
     5641 attggaacct aaacacatcc cagttttaaa agctgtttct ttcatgagca cagaaggaag
     5701 aaaagaaaat ttgcgcgccg tcttatcatc taaactaatg taatttaccc gagtacacgg
     5761 tgtttcatct tcactcagga cataattgtt cttctccaat ggttgctcga aacggacatt
     5821 tgcatcagtt aacaattcag catctatgtg ctgctgacgc tgcatggaac ggataagttc
     5881 tgcatcgttt tcatcggcag ctaaggtttt aaggggtatg acagccagga taaccaacag
     5941 acatggagca ggaaaaaatt tcatgacatc aatattattt tagcaatatt tactattttg
     6001 tcataaattt aaaagtattt acagttatag aatgagacct ttgcaaaatt ccccaaaatt
     6061 cccaccaaga catttagggg attttgggga attttgcaaa ggtctcggac agtattttga
     6121 acgcagtgcg cgtaaattcg tatggaaacc atgaaatccc gccacagccg ccagacatgc
     6181 caagccgcat tctgatattt ctgtttgcag gataacaggc agctttttct ttaagcccaa
     6241 agacaggttt tgcagatggg gcatagattt cctttttgaa aaatagggat taggaagttg
     6301 gatgtatttt agaaaggccg cctgaaaagg tttcagacga ccttttgcga ctagctgcta
     6361 ttttatttaa agcttttctc taacaaacga gctaatattt ttcctgtaat aaaacagata
     6421 aaaaacagca tccaatacgt cagattggaa aaatcggtcg tatagagaat caacatataa
     6481 agaagcagca tgatgccgag tgcgatgaat tgataatgtt tggcaaacat catgacctcc
     6541 tcaactatta aggcaaaccg cctgaatatt ctcgttcaat cgtttcggca atttccctat
     6601 aacgtcgata ccatgaccag tcgaaatttt caatggcatg gctcgcaaac gtaccaaatt
     6661 caggcatccc tatgcggcta cctgctaaag ctccgattgt agctccccaa ccaggcggat
     6721 tactgaacgt attgtttggc aatcctaaag atttatcagg atttcccgta tcgttaagcc
     6781 ctgcagattc gcaaatttcg caataatatg aactttgttg cgcattacct gagcctccga
     6841 cccaagtcat ttcatgaaca catatagtgg attaaattta aatcaggaca aggcgacgaa
     6901 gccgcagaca gtacaaatgg tacggcaagg cgaggcaacg ctgtactggt ttttgttaat
     6961 ccactataaa actctcattt tgaaactcct tgtatcgtta atcaaacaat caaaagggca
     7021 gatgccctat ccttgctttt acagacggag tgcctgtaga cggagtgcct gtaaaagggg
     7081 atggtttcag gcagttttga agtttgtgtt tttatatatt gtcttctggt cgtctgaaaa
     7141 ggtttcagac aacttcttta tctttcagcc tcaagtctta cagtttgccc gatatactat
     7201 aaatcggctc caatacccat tcatacaatc gccgtttctc gtgcaggatg tctgcttcca
     7261 acgtcatgcc gatttgcagc ggtttttcct caccgtatgc agtgatggtt ggtttgtcgg
     7321 gttttatttt cacaagataa acaggttcgt tgctcttcgc caaatcggag gataccatgc
     7381 ccaatcccga caattcctgt ctgcccagtg ccgtttttgc tactgatctt ccgcaagtct
     7441 aatgcgcctt ttctgaccgt ctatctgttg cgaaatatgg agtttctggt tttccaaacg
     7501 ttcgacagtt gctttaaggc tgcgcgtttc attcccgtgt atcagcttca gacgacccag
     7561 ttcctgttct gccaacgttt tcttcaaaac tgcctccgtt ttcaactgct gctgcacgct
     7621 acctcctgcg ccgaaacgtg aggtcgaaag cgcaaatagc ttgtcgccag ccttaacctt
     7681 ttctccatct tccacgaatt tcgctgtaat tgtccccgta tccggtgcat acaccctgat
     7741 tacgcctgat gcaggtaaaa tttgtccctc cgctgttgtc tttcgcgtat agttaccaaa
     7801 tatcaaaaac aggataatca ataacgcaga tatcgatgca aatgtcgtcc atagggaaaa
     7861 tgacaacggt cgtgtcagaa tcactttacc cgtcaggctg gtttggcggg caacggcgac
     7921 ttcgggacgg aagaagggtt gcttgggtct attcataaaa ttgaagttaa gaaagtttca
     7981 gacgacccct agagatcgtc tgaacaatga gaaatatcag cagtaatctg taccgtcagt
     8041 gtagccgttt cctgatttat ctgcttttgt tgcgggagca gttaatccat gttcaatctc
     8101 aaagattggt cttccgttat aaggaggtgc attaacggca tcatttaccc aatcacgagt
     8161 cacattgtat acaccatttg caccagcagc accgtaagca tttttcggca gataataaac
     8221 tgccgctgcg gcagcaggta ttgcaaccaa atccccccat gtgggacctc ctttggttgt
     8281 ggcagcatta gctacatttc cagctatatt gtctgttaca ggacctcccc ctgaaaccag
     8341 cttcaattca tgaagttgaa gttcaatcat ttttatactc cttttcttgg ttggtattcc
     8401 taaaaattcg gctaacaaaa acatatggca gatatattga aaaaaaattc aaagtaccct
     8461 gaataaaatt caaattccaa ctatatttgt taatgtagtc gagaagaaac atatctgata
     8521 aaaaatatag cacttgataa caagctatta ctaatattac gaaaaatgta aattgcttcc
     8581 agtttttcat agaatccctc acaaaatttc cagaaaatct aactctatca actgataaat
     8641 caacttccta acttcttcat attttccctg attgaagtta accagtagat ttttcaacaa
     8701 taacggttca ttcttaccga tgtgttctaa aacttttttc cccaactcat ctacgcttat
     8761 cttcatccca ttcccaatca aatatccctt ttccaacgta tccaaattat tggcatttaa
     8821 tctcaacctg acgtcgtctg aaagcggagt agcgttggga ttcgcgaact gttcgagatg
     8881 aaaagcggta tcggtacgtt ctttgccgag aaagtcttca ctgaaggctt cataattgac
     8941 ggggtcggca atcatggcag caatttgtgc ggcagtatcg ttgatacgcg tcctatcttg
     9001 ctcccagtct gagaaactgt ggcgcagact ttctatcgtg gggaatttct tcattagcca
     9061 ctcgaggtaa ttatagccgt tgggcggaaa ggtaccgaca gcgaggtgga aggtttcaca
     9121 gccgagcggg ataggtctgt gccaccaacc gcgcgggatg tagaggacat cacctgcttc
     9181 aaggataata tccatatcga tatgttcagg aatggaaata tcagtatctt tagtctgttg
     9241 catatacaat ggcataggga aatcaggggc agtaagttgc caacgtttct tgccgaaaag
     9301 ctggatggca tacacatctc ggatgtccca atggttttta taagattcgt cgctgccaaa
     9361 agcaagatac ccactaacaa tagtatgtgc gccggcaagg cgaggcaacg ctgtactggt
     9421 ttaaatttaa tccactataa tatggttata gagcaacgac gcgccattct tcatatgttc
     9481 gtagataacg gatttaataa aacggtagcg agttttgccc aaatcgtcga aactttcgac
     9541 gtattcttct ttaggaacaa ttgcaccttt tttacgcaga tgaaacagcg gtgcggttgg
     9601 gtctgctcgt tggtatatct cgttgatatc tttccaagat gcggcttcga gattccgaac
     9661 cgctccttta aagagcttgg gcttttgata cagataagtc tgtcggaacg ttttaggact
     9721 aatgccgaag tcgagatgga tgctcattac ttccccttac tcagaaaata tttaaaattt
     9781 ataatgttac atatatttac aaatattaaa gtttttttgt gtgtgcgtca aggaattgtt
     9841 gccaattttg ttatagtgga ttaacaaaaa tcaggaaaag gcgacgaaac cgcagacagt
     9901 acaaatagta cggcaaggcg aggcaacgct gtactggttt aaatttaatc cactataaaa
     9961 atttgttttg tttccaaacg aaaaaaagcg gtttgttttt tgttgttaac atttttattg
    10021 taattaaata aaaggtcttc tgaaaacggt tttcagacga ccttttgcta taatcgggct
    10081 tcatcgcccc gttcggtttg gaaccttatg aaaaccctcg tcctcctcct gctttctttc
    10141 tccacaacca ccgctttcgc cgcatacggt ttgggtttgg ggcaggcacc gaaatatcct
    10201 gccgactttc gcgcctacgg ttatgtttat tccggacgac agggctgggt tttaaaaaca
    10261 gaggcggatg ccattaaatt agacacgctt ttcaaacgct ttgtgtaccg tccttccgcc
    10321 gccaatcaaa accccgtcgg acagcgttcg gacggcatac ccgccaacca cacaaaggaa
    10381 aaaccatgag taaaaaaatc aaagtcggca ttgtcggcgc gacgggctac accggcgtgg
    10441 aactgctgcg cctgcttgcc gcccatcccg atgtcgaagt cgccgccgta accagccgca
    10501 gcgaagcggg aaccgcagtt gccgattact ttccaagtct gcgcggcgtg tacggcctcg
    10561 ccttccaaac gcccgacgag gcaggtttgg aacaatgcga catcgtcttc ttcgccacgc
    10621 ccaacggcat cgctatgaaa gacgcgctgc gccttttgga acagggcgtg cgcgtcatcg
    10681 acctttccgc cgacttccgc atacgggaca ttccgacctg ggaacactgg tacggcatga
    10741 cccacgccgc ccccggcctc gtttcccaag ccgtgtacgg attgagcgaa ctcaaccgcg
    10801 aagccgtcgc acaggcgcgc ctcgtcgcca accccggctg ctacccgacc tgcgtatccc
    10861 taccgctcgt gccgctgttg cggcaatgcc gtctgaagcc cggtatgccg ctgattgccg
    10921 actgcaaatc cggcgtatcc ggcgcgggca ggaaaggcaa tgtcggttcg ctgttgtgcg
    10981 aagccggcga caacttcaaa gcctacggca tagccggaca ccgccacctg cccgaaatca
    11041 ggcagaccat cgccgggctt caggacggca tcgccgaagg attcgtgttc acgccgcacc
    11101 tcgcgccgat gatacgcggt atgcacgcca ccgtttacct ccacctttca gacggcagca
    11161 accccgaaac cgttttgcgc gactattatc gcgacagcct gttcgtggac atcctgcccg
    11221 ccggttcgac acccgaaacc cgcagcgtgc gcggcgcaaa cctctgccgc atcagcatcc
    11281 aacaggcggc gcaatccgat gtgtgggtcg tcctttccgt catcgacaac ctcgtcaaag
    11341 gcgcggcggg acaggcggtg caaaatatga acatcatgtt cggactgaag gaaacacacg
    11401 gcttggacgc aatccccctg ctcccctgaa acgcaaacgg caaaccgcag gcatcgtgcc
    11461 tgcggttttt tgatgccatc tgaaagcggc ggtttttttg ggttcggacg gcttttggct
    11521 cattattccg cgaaaacaaa aatctaaaat accgtcattc ccgcaaaagc gggaat
//
LOCUS       DAWGNT010000049        11442 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.049, whole genome shotgun sequence.
ACCESSION   DAWGNT010000049 DAWGNT010000000
VERSION     DAWGNT010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11442
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.049"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(12..1307)
                     /gene="tyrS"
                     /locus_tag="WHR98_000941"
     CDS             complement(12..1307)
                     /gene="tyrS"
                     /locus_tag="WHR98_000941"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEZ2307637.1"
                     /translation="MSVIQDLQSRGLIAQTTDIEALDALLNEQKISLYCGFDPTADSL
                     HIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVESIR
                     SQLTPFLSFEGGNAAIMANNADWFGKMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRD
                     GAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLNQKQVFG
                     LTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSI
                     EEIDAIEAKDKASGTKPEAQRILAEEMTRLIHGEAALQAAQRISESLFAEDQSSLTES
                     DFEQLALDGLPAFEVSDGINVVEALVKTGLASSNKEARGFVNSKAVLLNGKPAEANNP
                     NHAAERPDDACLLNGEHKRFGKYTILRRGKRNHALLVWK"
     gene            complement(1370..3238)
                     /locus_tag="WHR98_000942"
     CDS             complement(1370..3238)
                     /locus_tag="WHR98_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEZ2307638.1"
                     /translation="MSQALPYRPDIDTLRAAAVLSVIVFHIEKNWLPGGFLGVDIFFV
                     ISGFLMTMILHREMSGGGRFSLKAFYIRRIKRILPAFFAVLAATLTGGFFLFTKDDFF
                     LLWKSALTALGFASNLYFARGKDYFDPAQEEKPLLHIWSLSVEEQFYFVFPILLLLVA
                     RKSPRVQFGFLAALCALSLAASFMPSAFDKYYLPHLRACEMLVGSLTAVWMRCRQPAV
                     GRRCAAAGALFAVCILSTCLFSYSEQTAYFPGPAALIPCLAVAALIYFNHYEHPLKKF
                     FQWKITVAAGLISYSLYLWHWPILAFMRYIGPDNLPPYSPAAAIVLTLAFSLISYHCI
                     EKPFKKWKGSFAQSVLWIYALPMLILGAGSFFAMRLPFMAQYDRLGLTRSNTSCHNNT
                     GKQCLWGDTEKQPELLVLGDSHADHYKTFFDAVGKKEKWSATMVSADACAYVEGYASR
                     VFQNWAACRAVYRYAEEHLPLYSKVVLAMRWGSQMPENSRSLAYDAGFFQKFDRMLHK
                     LSSEKQAVYLMADNLASSYNVQRAYILSSRIPGYRQTLRPDDESTLKANARIRELAAK
                     YPNVYIIDAAAYIPANFQIGGLPVYSDKDHINPYGGTELAKRFSEKQRFLDTRHNH"
     gene            3315..3518
                     /locus_tag="WHR98_000943"
     CDS             3315..3518
                     /locus_tag="WHR98_000943"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307639.1"
                     /translation="MPDGFLQQRGRRFVLQESGRANRKCGRDFILMQPHSGGMETPKT
                     TKTGFRRHFWQSRLKTCRIWVTR"
     gene            complement(3508..4599)
                     /gene="ychF"
                     /locus_tag="WHR98_000944"
     CDS             complement(3508..4599)
                     /gene="ychF"
                     /locus_tag="WHR98_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002642527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEZ2307640.1"
                     /translation="MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIV
                     EVPDPRMAELAKIVNPQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVN
                     VVRCFDDDNIVHVAGRVDPIADIETIGTELALADLASVAKAIVREEKRARSGDKDAQK
                     LVDLCKKLLPHLDEGKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPH
                     LDRLKELAAKENAPVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDL
                     LGLQTYFTAGVKEVRAWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEA
                     KAKEAGKMRVEGKEYVVQDGDVMHFLFNV"
     gene            complement(4713..6389)
                     /locus_tag="WHR98_000945"
     CDS             complement(4713..6389)
                     /locus_tag="WHR98_000945"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HEZ2307641.1"
                     /translation="MSFKTDAEIAQSSTMRPIGEIAAKLGLNADNIEPYGHYKAKINP
                     AEAFKLPQKQGRLILVTAINPTPAGEGKTTVTIGLADALRHIGKDAVIALREPSLGPV
                     FGVKGGAAGGGYAQVLPMEDINLHFTGDFHAIGAANNLLAAMLDNHIYQGNELDIDPK
                     RVLWRRVVDMNDRQLRNIIDGMGKPVDGVMRPDGFDITVASEVMAVFCLAKDISDLKE
                     RLGNILVAYAKDGSPVYAKDLKAHGAMAVLLKDAIKPNLVQTIEGTPAFVHGGPFANI
                     AHGCNSVTATRLAKHLADYAVTEAGFGADLGAEKFCDIKCRLAGLKPDAAVVVATVRA
                     LKYNGGVERANLGEENLEALAKGLPNLLKHISNLKNVFGLPVVVALNRFVSDSDAELA
                     MIEKACAEHGVEVSLTEVWGKGGVGGADLARKVVNAIENQPNNFNFSYDVELSIKDKI
                     RAIAQKVYGAEDVDFSAEASAEIASLEKLGLDKMPICMAKTQYSLSDNAKLLGCPEGF
                     RITVRGITVSSGAGFIVALCGNMMKMPGLPKVPAAEKIDVDAEGVIHGLF"
     gene            6564..6995
                     /locus_tag="WHR98_000946"
     CDS             6564..6995
                     /locus_tag="WHR98_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEZ2307642.1"
                     /translation="MSSNAWLFWALASAGFASLTAVFAKMGLQGIDSDFATFIRTLVI
                     LAALVLFLTYTGKWQGVNGFTGRNWTFLILSGLATGASWLAYFKALQLGNASQVAPID
                     KFSLVLVALMAVVFLDERPNTQEWIGLGLVTAGVLVLALKR"
     gene            complement(7226..7921)
                     /locus_tag="WHR98_000947"
     CDS             complement(7226..7921)
                     /locus_tag="WHR98_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEZ2307643.1"
                     /translation="MKAMILAAGRGERMRPLTDTTPKPLLDVAGKPLIGWHLCRLKQA
                     GFTEIVINHAWLGRQIEDALGDGSAYGVNIAYSPEPAGGLETAGGIAQALPLLGGQPF
                     LVVNGDVLTDIDFTAAFQAASSLPEHISAHLWLVENPPHNPDGDFSLLPDGSVRPEVN
                     GGNGLTFSGVGIYRPEMFDGIEAGSVAKLAPVLRGEMRQNRVSGQKHTGLWLDVGTVC
                     RLKEAQALAGAWK"
     gene            complement(7937..8437)
                     /gene="hpaC"
                     /locus_tag="WHR98_000948"
     CDS             complement(7937..8437)
                     /gene="hpaC"
                     /locus_tag="WHR98_000948"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HEZ2307644.1"
                     /translation="MADLQKTFQTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVTP
                     VTDEPPTVMLCINRSARIIPILSENGSLCINTLADEHQDVAEHFAGLTGLSPEERFAY
                     HIWHRGKTGQLEIEGALAHLHGHIVGKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRR
                     QFRFLD"
     gene            complement(8552..8992)
                     /gene="nadR"
                     /locus_tag="WHR98_000949"
     CDS             complement(8552..8992)
                     /gene="nadR"
                     /locus_tag="WHR98_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family adhesin repressor NadR"
                     /protein_id="HEZ2307645.1"
                     /translation="MPTQSKHASINISLIQAREALMTQFRPILNQANITDQQWRIIRL
                     LAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEK
                     LYEEIGEEVDERYDAIEEVLGREKMLLLKDLLAELAKIEDALNS"
     gene            complement(9335..9844)
                     /locus_tag="WHR98_000950"
     CDS             complement(9335..9844)
                     /locus_tag="WHR98_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HEZ2307646.1"
                     /translation="MKKKLLSGIKFAVQTALVFLLVSLFLDWVRKPDEPAGAAGRPLT
                     LLSGQRLTLGQFSRDKAVLVYFWGSWCGVCRYQSPIIDDLAADGVPVVGVAVRSGSAS
                     EVAAYMAKRGLGFPTVNDEDGGLARSWRIVATPAVVLVKNGKMVHYTTGISSYWGLRA
                     RIFQADVFG"
     gene            complement(9923..9998)
                     /locus_tag="WHR98_000951"
     tRNA            complement(9923..9998)
                     /locus_tag="WHR98_000951"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9963..9965),aa:Lys,seq:ttt)
     gene            10209..11288
                     /gene="apbC"
                     /locus_tag="WHR98_000952"
     CDS             10209..11288
                     /gene="apbC"
                     /locus_tag="WHR98_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HEZ2307647.1"
                     /translation="MNIQNIRTLLDTVAVPNTARTLGGEKAVRSVEQRSDGIHIALHF
                     GFPVAHIASETADRIQEILMPLTGDTHIHLSMDTEIGTHKVQPGVTTIKGVKNIIAVA
                     SGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDRKPDQKNQKLIP
                     VESSDGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYLFIDLPPGTGD
                     IQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMSVHICSNCG
                     HSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGATAQLFDEHPAIARIYTDA
                     AFQIALGIADKGKDFSSRFPKIVVE"
BASE COUNT         2635 a         3149 c         3083 g         2575 t
ORIGIN      
        1 cggcaatcgg attatttcca aaccaaaagc gcgtggttgc gtttgccgcg ccgaaggata
       61 gtgtatttgc cgaaacgttt gtgttcgccg ttcagcaggc aggcatcgtc ggggcgttcg
      121 gcggcgtggt tggggttgtt ggcttcggca ggtttgccgt tgagcaaaac cgctttgctg
      181 ttcacaaagc cgcgcgcttc tttattggag gatgccaaac cggtttttac caaggcttcg
      241 acgacattga tgccgtctga aacttcaaat gcaggcaggc cgtcgagggc gagctgctcg
      301 aagtcgcttt cggtcaggct gctttggtct tcggcaaaca ggctttcgga aatgcgctgc
      361 gcggcttgca gggcggcttc gccgtgaatc aggcgggtca tttcttcggc gaggatgcgt
      421 tgcgcttcgg gcttggtgcc gcttgccttg tctttggctt cgatggcatc gatttcttcg
      481 atggacagga aggtaaagta tttcaggaat ttatacacat cggcatcggc gactttcagc
      541 cagaattggt agaactgata gggcgaggtt tttttcgcgt tcagccatac tgcgccgcct
      601 tcggttttgc cgaatttggt gccgtctgat ttggtaacca aaggcagggt caggccgaac
      661 acttgttttt gattcaggcg gcgggtcagg tcgataccgg cggtgatgtt gccccattgg
      721 tcggagccgc cgatttccaa aaccgcgccg tggcgtttgt tcaactcggc gaagtcgtag
      781 ccttgcagca gggagtaggc gaactcggtg aaggaaatgc ctgcgccgtc gcggtcaatg
      841 cgctgtttga cggattcttt gttcagcatg gcgttgacgg agaaatgctt gccgatgtcg
      901 cgcaggaagt cgaggcagtt cattttgccg aaccagtcgg cgttgttcgc cataatggcg
      961 gcgtttccgc cttcaaagct caagaaaggg gttaattggc tgcggatgct ttccacccag
     1021 ccggcaacgg tttcggcgga attcaagctg cgttcggcgg ctttgaagct ggggtcgccg
     1081 atcataccgg tcgcaccgcc caccagtgca atcggcgtat gccccgcctg ttggaagcgg
     1141 cgcaatgcca atacgggcag caggtgtccg atgtgcaggc tgtcggcggt cgggtcgaag
     1201 ccgcaataaa gggaaatttt ttgttcgttc aacaaagcgt ctaaggcttc gatgtcggtg
     1261 gtttgcgcga taaggccgcg cgattgcagg tcttggatga cgctcatcgg tctctttcaa
     1321 aaaaaattag cggttttgca aaccgccgat tgtaacaaat ttaagcgaat caatggttat
     1381 ggcgcgtatc gagaaaccgt tgtttttcgg aaaaacgctt cgccaattcc gtgccgccgt
     1441 aagggttgat gtggtctttg tccgagtaaa ccggcaatcc gccgatttgg aaatttgcgg
     1501 ggatataggc ggcggcatca ataatataga cgttggggta tttggctgcc aattccctga
     1561 tgcgtgcatt ggctttcaga gtgctttcgt cgtccgggcg cagggtttgg cggtaacccg
     1621 gtatgcgtga agacaagata taggcgcgtt gtacgttgta agacgaggca aggttgtccg
     1681 ccatcaggta aacggcttgt ttttcggatg agagtttgtg cagcatacgg tcgaattttt
     1741 ggaaaaaacc ggcatcgtag gcaagggagc ggctgttttc gggcatttgg ctgccccagc
     1801 gcatcgccaa aaccactttt gaatacaggg gcaggtgttc ttcggcatag cggtaaacgg
     1861 cgcggcaggc ggcccagttt tggaacacac gggacgcgta gccttccaca taggcgcaag
     1921 cgtcggcgga aaccatagtg gcggaccatt tttctttttt gcccacggca tcgaagaatg
     1981 ttttgtaatg gtcggcgtgg gaatcgccca aaaccagcag ttccggctgt ttttccgtat
     2041 ccccccatag gcattgtttg ccggtattgt tgtggcagga ggtgttggaa cgcgtcagcc
     2101 ccaagcggtc gtattgcgcc ataaacggca gcctcatcgc gaaaaacgag cccgccccca
     2161 aaatgagcat aggcaaggca taaatccata aaacggattg tgcgaacgaa cctttccatt
     2221 ttttaaacgg cttttcgatg cagtgataag aaatcaggga aaacgctaga gtcaggacga
     2281 tcgctgccgc cggcgaataa ggcggcaggt tgtccgggcc gatatagcgc ataaaggcca
     2341 atatcggcca atgccacaga taaagcgaat aggaaatcaa accggcggca acggtgattt
     2401 tccattggaa aaatttttta agcgggtgtt cgtaatgatt gaaataaatc agcgcggcaa
     2461 cagccagaca gggaatcaaa gcggcggggc ccgggaaata ggcggtttgt tccgaatagg
     2521 aaaacaggca ggttgacaat atgcacacgg caaacaatgc gccggcggcg gcacagcgtc
     2581 tgccgacggc aggttgccgg cagcgcatcc acacggcggt cagcgatccg accagcattt
     2641 cgcaggcgcg caggtggggc aggtaatatt tatcgaacgc ggaaggcata aaggaagcgg
     2701 caaggcttaa ggcgcacaat gcggcgagga agccgaactg tacgcgcggg cttttgcggg
     2761 cgacaagcag cagcaatatc ggaaagacaa agtaaaattg ttcttcgacc gacaaagacc
     2821 aaatgtgcag caagggcttt tcttcctgcg cgggatcgaa ataatccttc ccccttgcaa
     2881 aatacaggtt ggaggcgaaa cccaaggcgg tcagcgcgga tttccataaa agaaagaaat
     2941 catctttggt gaataaaaag aagccgcctg tcagcgttgc cgccaatacg gcgaaaaatg
     3001 cgggcagaat ccgcttgatg cggcggatat aaaatgcctt cagggaaaac ctcccccccc
     3061 ccgacatttc gcggtgaaga atcatcgtca tcaaaaagcc tgaaatcacg aagaatatat
     3121 cgacaccgag aaacccgccc ggcagccaat ttttttcgat atggaacacg atgacggaca
     3181 agacggcggc ggcgcgcaat gtgtcgatgt ccgggcggta gggtaaggct tggctcataa
     3241 tatttttgct ttcatcgcgg cggcgcaaat gccatctgaa aggtcatttt gtatcggggc
     3301 tcgggatatt cggaatgccg gacggatttt tgcaacagcg gggcaggcgg tttgttttgc
     3361 aggaatcggg gagggcaaat cggaaatgcg ggcgggattt tattttgatg cagccgcatt
     3421 ccggcggtat ggaaacgccg aaaaccacca aaaccggctt cagacggcat ttctggcaaa
     3481 gccgtctgaa aacctgccgc atttgggtta cacgttaaac aaaaagtgca tcacatcccc
     3541 atcctgcacg acgtattcct tgccttccac acgcattttg ccggcttctt tggctttggc
     3601 ttcgccgccg agcgagacaa agtcgtcgta agaaatgact tgggcgcgga tgaagccgcg
     3661 ttcaaaatcc gtatgaatca cgccggcggc ttgcggggcg gtgtcgcctt tgtgtatcgt
     3721 ccacgcgcgg acttctttca cgccggcggt gaagtaggtt tgcaggccca agaggtcgta
     3781 gccggcgcgg atcaggcggt tcaggccggg ttcttccaaa cccatttcgg cgaggaattc
     3841 ggctttttcg tcgtcttcca attcggcgat ttcgctttcc atcgcggcgc atacggcgac
     3901 gacgggggcg ttttcttttg ccgccaattc tttcaggcgg tcgaggtgcg gattgttttc
     3961 aaaaccgtct tcggcgacgt tgcccacata catcgcaggt ttggctgtca gcaggaacag
     4021 cggtttgagc atcgcgcgtt cttccgcgtc caaaccgaag gaacgcacgg gtttgccttc
     4081 gtccagatgc ggcagcagtt ttttgcacaa atcgaccagc ttttgcgcgt ctttgtcgcc
     4141 tgaacgggcg cgtttttctt cgcggacgat ggcttttgcc acacttgcca ggtcggcaag
     4201 tgccaactct gtgccgatgg tttcgatgtc ggcaatcgga tcgacgcggc ctgcaacgtg
     4261 gacgatgttg tcgtcgtcaa agcagcgcac gacattcaca atcgcatcgg tttcgcggat
     4321 gttggcaagg aactggttgc ccaagccctc gcctttgctc gcgcctgcaa ccaaaccggc
     4381 aatatcgaca aattcgacga tggcaggctg cattttttgc ggattgacga tttttgccaa
     4441 ttcggccata cgcggatcgg ggacttcgac gatgccgacg ttgggttcga tggtacagaa
     4501 aggatagttt gccgcttcga tacccgattg ggtcagcgcg ttaaaaaggg tggatttgcc
     4561 gacgttgggc aaaccgacga tgccgcattt caaactcatg ttttttcctg aaaatagaga
     4621 aatttaacgg cggattatag cataccgccg cccgcgttcc gaaaaaatgc cgtctgaaac
     4681 ggcttcagac ggcatctggt ttcaaaaacc gttcagaaca agccgtgaat cacgccttct
     4741 gcgtccacgt cgattttctc ggcggcggga actttgggca gacccggcat tttcatcata
     4801 ttgccgcaca acgcaacgat gaaaccagca ccggaagaaa cggtaatgcc gcgcacggta
     4861 atgcggaagc cttcagggca gcccaagagt ttggcgttgt cgctcaaaga atattgggtt
     4921 ttcgccatgc aaatcggcat tttgtccaag cccagttttt ccagcgaggc gatttcggca
     4981 gacgcttccg cgctgaaatc aacatcttcc gcgccgtaca ctttttgggc aatcgcacgg
     5041 attttgtctt taatactcag ctcaacatcg taggaaaaat tgaagttgtt cggttggttt
     5101 tcgatggcgt tgacgacttt gcgcgccaag tctgcaccgc ccacgccgcc tttgccccac
     5161 acttcggtca aggaaacttc aacgccgtgt tcggcacagg ctttttcaat catcgccaac
     5221 tcggcatcgg agtcggacac gaagcggttg agcgcaacga cgacgggcag tccgaatacg
     5281 tttttcaggt tggaaatgtg tttcagcagg ttgggcaaac cttttgccaa ggcttcgagg
     5341 ttttcttcac cgaggttggc acgttccacg ccgccgttgt atttcaaagc gcggacagtc
     5401 gccacgacga ccgccgcatc aggtttcaaa ccggcaaggc ggcatttgat gtcgcagaat
     5461 ttttccgcgc ccaaatccgc gccgaagcct gcttcggtta cggcgtaatc ggcaaggtgt
     5521 ttcgccagac gggttgcggt tacggagttg cagccgtggg cgatgttggc gaacgggccg
     5581 ccgtgtacga aggcgggcgt gccttcgatg gtttgcacca aattgggctt aatcgcatct
     5641 ttgagcagga ccgccatcgc gccgtgtgcc ttcaaatctt tggcgtaaac ggggctgccg
     5701 tctttggcgt aggcgacgag gatgttgccc aaacgctctt tcaaatcgct gatgtctttg
     5761 gcaaggcaga ataccgccat cacttcggag gcaacggtaa tatcaaaacc gtcggggcgc
     5821 atcacaccgt caacgggttt acccatgccg tcgatgatgt tgcgcaactg gcggtcgttc
     5881 atatcgacca cgcgccgcca cagcacgcgt ttggggtcga tgtccaactc gttgccctga
     5941 tagatatggt tgtcgagcat cgcggcaagc agattatttg ccgcaccgat ggcgtgaaaa
     6001 tctccggtga agtgcaggtt gatgtcttcc atcggcaaaa cttgggcata gccgccgcct
     6061 gccgcgccgc ctttcacgcc gaacaccggc cccagagaag gttcgcgcag ggcaatcacg
     6121 gcatctttgc cgatgtggcg caacgcgtcc gccaaaccga tggttacggt ggttttgcct
     6181 tcgcccgccg gagtcgggtt gatggcggta accaaaatca gcctgccctg tttttgcggc
     6241 agtttgaacg cttcggcagg attgattttc gccttgtaat gaccgtaagg ctcaatgttg
     6301 tcggcattca gaccaagctt ggcggcaatt tcgccaatcg ggcgcatggt ggaggattgg
     6361 gcgatttcgg catcggtttt gaagctcatg attttccttt agaaatgagg agggacatgc
     6421 cgtctgaaag catcaggcga caaacaggtg gattgaaaat aatatcaggc atattataac
     6481 gttatccgca ccaaacccgc agtgaaattt ttgacgctgc aacaaaaata ccgttcatat
     6541 tgttcacaat ccaaggagaa aacatgagca gcaacgcatg gctgttttgg gcattggcat
     6601 cggcaggctt cgcctcattg accgccgttt tcgccaaaat gggtttacag ggcatcgatt
     6661 ccgatttcgc cacctttatc cgcaccttgg tgatcctcgc cgctttggta ttgtttttga
     6721 cctacaccgg caaatggcag ggtgtgaacg gctttacggg gcgcaactgg acattcctta
     6781 tcctatccgg ccttgctacc ggcgcatcct ggctcgccta cttcaaagcc ctgcaactgg
     6841 gcaacgcctc gcaagtcgcc cccatcgaca aattcagcct ggtcttggtc gcgctgatgg
     6901 cggtggtttt cttggacgaa cgcccgaaca cgcaggaatg gataggcttg gggctggtaa
     6961 cggcgggcgt gttggtgctg gcgttgaaac gttaaaccga atccgccata ccgcctgaaa
     7021 ccgggttttg acaatctgac gggcggcggt ctgaacaaag ttacccaata aaatccgaca
     7081 ccgcgccgac ggcaaaccgc cgcgcttcag atggcatttg ttggacggaa agccccgaac
     7141 gccctatttt cacgcctcca cgaaaatatg ccggacatcc ggtcggaacc gttcggcagc
     7201 cggctcggca agccaccgtt ttatttcact tccaagcccc tgcaagggct tgagcctctt
     7261 tcagacggca taccgtgccg acatccagcc acaagcccgt atgcttctga ccgctcacgc
     7321 ggttttgccg catttcgcca cgcaatacgg gcgcgagttt cgccacactg cccgcttcga
     7381 ttccgtcaaa catttcagga cggtaaatac ccacgccgct gaatgtcaat ccgttgccgc
     7441 catttacttc cggccgcacg ctgccgtcgg gcagcaggga aaaatcgccg tcggggttgt
     7501 gcggcggatt ttccaccagc cacagatggg cggaaatatg ttccggcagg gacgatgccg
     7561 cctgaaacgc ggcggtaaaa tcgatgtcgg tcagcacgtc gccgttgacc accaaaaacg
     7621 gctgcccacc caacagcggc aatgcctgcg cgatgccgcc tgccgtttcc aaaccgcctg
     7681 cgggttcggg cgaataggcg atgttcacgc cataagccga gccgtcgccc aaagcatctt
     7741 ctatctgccg gcccagccaa gcgtggttga tgacgatttc ggtaaacccc gcctgcttca
     7801 gacggcatag gtgccaaccg attagaggct tacccgccac atcgagcagc ggcttcggag
     7861 tggtatcggt caaagggcgc atacgctcgc cgcgtcctgc cgccagtatc atcgctttca
     7921 tatatctgtc cgaatatcag tctaaaaatc taaactgccg tctgaaatac agcagcgcgg
     7981 ggcgtttgca cccgcagttt ttgatttcgt cgagcctgac gtaaaacaca aaatgcgtgc
     8041 cgatttcatg tttgccgaca atatgcccgt gcaggtgcgc caacgcgccc tctatttcaa
     8101 gttgtcccgt tttgccgcga tgccagatgt ggtaggcaaa ccgctcttcg ggcgacagcc
     8161 cggtcagccc ggcaaaatgt tcggcaacat cctgatgttc gtccgccagc gtattgatgc
     8221 agaggctgcc gttttccgac aggatcggaa tgattcgcgc actccggttg atgcacagca
     8281 tcacggtcgg cggctcgtcc gtaaccggtg taaccgccgt cattgtaatg ccgtaacgcc
     8341 ctgccgcacc gtctgtcgtg atgacatgaa cgcctgccgc acaagatgcc atcgcatcac
     8401 ggaacgaagt ttgaaaagtt ttctgcaaat ccgccatttt tcccctttaa actgtcccct
     8461 atataagaat gctgcacaca aggcatcccc catgtgcagc agttttgatt caaaaagccg
     8521 tcggtcggac gtttccgcgc gttacggcgt attacgagtt caacgcatcc tcgattttgg
     8581 caagttctgc caacaggtct ttaagcagca gcattttctc gcggcccagc acttcctcga
     8641 tagcgtcgta acgctcgtcc acttcttcgc cgatttcctc atacagcttc tcgccctcgg
     8701 cagtcagctt cagaaaaaca cgtcgttggt cgttggaagg tttcaggcgg acgaccaaac
     8761 ccgctttttc aaggcgggtc aggataccgg tcaggctggg gcgcaaaatg cacgcctgat
     8821 tcgccaaatc ttgaaagtcc agcgtgccgt tttccgccaa aagacggata atccgccatt
     8881 gctgatcggt aatattcgcc tgattcagaa taggcctgaa ttgggtcatc agggcttccc
     8941 ttgcctgtat cagactgata ttgatagacg catgttttga ttgggtaggc attgttcaag
     9001 tctccaagtt atcgaaaatc aaactttcaa accgtcggga aagcctgtgg gcgtaaattt
     9061 tgatgcaacc gttatataac aaaacgaaca tatagcaaca atacgctata aaccgcatcg
     9121 gacgactggg tataaaagac tttaattccg ataatcctat ctaaaaatat tttaatagtt
     9181 atatcttagt ctattttccc tacaatctca acaaagtatt acatttactg tcgaaagaac
     9241 tttcttccag aaaaaacaaa agccgccgca tcagacgagc aaggtatatg ccgtttgatt
     9301 ctctacatag cgtaaagttt aacaaaaaca aaagttaacc gaaaacatcc gcctgaaaaa
     9361 ttcgtgcgcg caagccccaa taactgctga ttcccgtcgt ataatggacc attttcccat
     9421 ttttgaccaa aacgacggca ggcgttgcga caatccgcca agaccttgcc aaacccccgt
     9481 cctcatcgtt gaccgtcgga aagcccaagc cccgctttgc catatacgcc gccacttcgg
     9541 acgcgctgcc ggaacgtacc gccacgccga cgaccggaac gccgtccgcc gccaaatcat
     9601 cgattatcgg cgactgataa cggcacacgc cgcaccagct cccccaaaaa tacaccaaaa
     9661 ccgccttatc ccggctaaac tgtcccaaag tcagccgctg ccccgacagc agggtcaaag
     9721 gccgccctgc cgcgccggca ggttcgtcgg gcttgcgtac ccaatccaaa aacagcgaca
     9781 ccaataaaaa caccaatgcc gtctgaacgg caaatttgat gcccgaaagc agtttctttt
     9841 tcatacgctc tctcaaacgg tacgcccgcg caaccggcag gcaaacaaaa agccaagtct
     9901 caaaacttgg cttccggtta tctggtgggt cgtgagcgat tcgaacgctc gaccaacgga
     9961 ttaaaagtcc gctgctctac cgactgagct aacgacccga taagccgtgc attatacagc
    10021 accatcctgc ctcgtcaagc aaattttaca ggcttaattg cagaccactg tttgcacggg
    10081 atattttgac aacggatttt cacaatccgc cgcataccgt gtaaaagttc gcacaaggaa
    10141 aagcaaaccg cccgaaatca atgtacactt tccgcccgtt tcccaaactg cacacagaaa
    10201 cacacattat gaacatacaa aacatccgca ccctcctcga caccgtcgcc gttccgaata
    10261 cggcacgcac gctcggcggc gaaaaggccg tccgttcggt cgaacagcgt tcagacggca
    10321 tccatatcgc cctgcatttc ggcttccccg tcgcgcacat tgcctcagaa acagccgacc
    10381 gcatacagga aatcctgatg ccgctgacag gcgacacaca catccatctg tccatggaca
    10441 ctgaaatcgg cacacacaaa gtccagcccg gcgttaccac tatcaaaggt gtgaaaaaca
    10501 tcattgccgt cgcatcggga aaaggcggcg tgggcaaatc aaccaccact gccaaccttg
    10561 ccgccgcgat ggcgcggatg ggcgcgcgcg tcggcgtact cgatgccgac ctttacggcc
    10621 cgagccaacc gaccatgttg ggtgtggacg accgcaaacc cgatcagaaa aaccaaaaac
    10681 tcattcccgt cgaatcttca gacggcatac aggtcatgtc tatcggcttt ctcgtcgata
    10741 ccgaccaagc cgtcgtctgg cgcgggccga tggtcagcca agccttgcag caactgatgt
    10801 ttcaaagcga gtgggacgaa gtggactacc tgtttatcga cctgcccccc ggcacgggcg
    10861 acatccaact cacgctgtcc caacgcatcc ccgtaaccgg atcggtcatc gtaaccacgc
    10921 cgcaggacat cgccctgata gacgcgcgca aagccgtgga tatgttccga aaagtcaaca
    10981 ttcccatttt aggtgtattg gaaaatatgt ccgtccacat ctgctccaac tgcggacaca
    11041 gcgaagcact gttcggcaca gacggcggca aagacttggc ggcacgcctc aacgtccccc
    11101 tgctgggaca gcttccatta agcctgcccg tgcgcgaagc catggacgga ggggcgacgg
    11161 cgcaactgtt cgacgaacac cccgccatcg cccgaatcta caccgatgcc gcattccaaa
    11221 tcgccctggg cattgccgac aaaggcaaag acttcagcag ccggttccct aaaatcgtcg
    11281 tcgaataaag ccgcgtccga aaccgcaaca gcaatgccgt cccaagcccc gcgcctgccg
    11341 gcgggcaaac ttgccgggta aacggtttct tgagattccg cgtcctggat tcccactttc
    11401 gtgggaatga cgcggtgcag gtttccgtat ggatgggttc gt
//
LOCUS       DAWGNT010000050        11156 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.050, whole genome shotgun sequence.
ACCESSION   DAWGNT010000050 DAWGNT010000000
VERSION     DAWGNT010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11156
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.050"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            57..338
                     /locus_tag="WHR98_000953"
     CDS             57..338
                     /locus_tag="WHR98_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEZ2307648.1"
                     /translation="MIHEEICAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKI
                     LFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRKETVESADRKMSLG"
     gene            complement(359..1585)
                     /locus_tag="WHR98_000954"
     CDS             complement(359..1585)
                     /locus_tag="WHR98_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HEZ2307649.1"
                     /translation="MTFLQRLQGLADNKICAFAWFVVRRFDEERVPQAAASMTFTTLL
                     ALVPVLTVMVAVASIFPVFDRWSDSFVSFVNQTIVPQGADMVFDYINAFREQANRLTA
                     IGSVMLVVTSLMLIRTIDNTFNRIWRVNSQRPWMMQFLVYWALLTFGPLSLGVGISFM
                     VGSVQDAALASGAPQWSGALRTAATLTFMTLLLWGLYRFVPNRFVPARQAFVGALATA
                     FCLETARSLFTWYMGNFDGYRSIYGAFAAVPFFLLWLNLLWTLVLGGAVLTSSLSYWR
                     GEAFRRGFDSRGRFDDVLKILLLLDAAQKEGKALPVQEFRRHINMGYDELGELLEKLA
                     RHGYIYSGRQGWVLKTGADSIELNELFKLFVYRPLPVERDHVNQAVDAVMMPCLQTLN
                     MTLAEFDAQAKKQQQS"
     gene            complement(1600..2025)
                     /locus_tag="WHR98_000955"
     CDS             complement(1600..2025)
                     /locus_tag="WHR98_000955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307650.1"
                     /translation="MPSEHAAYADLTASSAKRLLCAKAILFSSAVRTGAAVGNIFFDG
                     FADGGDFGDGAQYGFATFNAVDAASDSAGGISGAAVLEIVEDEDFEGDLGSWADSVKM
                     VRSSDGITVVPMPSETAAVQAFVPDGKIGYNIGHQCPTY"
     gene            2130..2789
                     /gene="queC"
                     /locus_tag="WHR98_000956"
     CDS             2130..2789
                     /gene="queC"
                     /locus_tag="WHR98_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEZ2307651.1"
                     /translation="MSNQKALVIFSGGQDSTTCLIQAIQIYGRENVQAITFQYGQRHA
                     VELERARWIAQDLGVKQTVLDLSLMRQITHNALMDDTAAIETAENGVPNTFVDGRNAL
                     FLLYAAIYAKGQGIRHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPL
                     MYLTKAQTWALADEMGVLDYIREQTHTCYNGIVGGCRECPSCILRERGLAEYLESKKA
                     V"
     gene            2817..3335
                     /locus_tag="WHR98_000957"
     CDS             2817..3335
                     /locus_tag="WHR98_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1543 domain-containing protein"
                     /protein_id="HEZ2307652.1"
                     /translation="MPKLHMFYLGGNAGRSNIEVHDIQFAVCDDYREAVPALKAAWFG
                     DADKIHIDGWQVVEWADGYDIAVSETPKTEMPSEHAPRLYFANVGGYRAGQLAEAHAF
                     GLFAAATPAEAKQKALQTLLTDSYVQQHKDNLKDVDNLLALDRIGNFHIRLTPNPHGK
                     PAEIGFQGYLPI"
     gene            3342..3764
                     /gene="queD"
                     /locus_tag="WHR98_000958"
     CDS             3342..3764
                     /gene="queD"
                     /locus_tag="WHR98_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HEZ2307653.1"
                     /translation="MKITKIFTFDSSHMLDGHDGKCQNLHGHTYKLEITVSDDPVRGG
                     PKDGMVMDFTDLKAIVKQHITDPFDHAFIYHGGNGRESQIAALLEGWNMKTLRLPCRT
                     TAENMAVEMYDRLKNAGLNVCRVKLWETPTSCAEYEGE"
     gene            4033..4404
                     /locus_tag="WHR98_000959"
     CDS             4033..4404
                     /locus_tag="WHR98_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HEZ2307654.1"
                     /translation="MKLLFILLVLFVAVEHFYIAWLEMTQIPSEKAAEIFKLPYEFME
                     QKQVQTLFSNQGLYNGFLGIGLVWSRFAAPDNAVYGATTLFLGFVLIAAAWGAFSSGN
                     KGILVKQGLPAMLAAAAVLAV"
     gene            4401..5039
                     /locus_tag="WHR98_000960"
     CDS             4401..5039
                     /locus_tag="WHR98_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003777273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEZ2307655.1"
                     /translation="MKKINVAPENPQYRIVEIFESLQGEGWNTGMPAVFVRLGKCNLA
                     CGWCDTDYLTFGMMGLSDILGRLKTYAARNIIITGGEPTIQPHLDMLLDTLKAEGYFL
                     CLETNGLNPAPPQIDYVATSPKACYAAKYENSCIETADEVRIVADGDVLAFCENMERK
                     IRAHHYYLSPCEQDGAMNIYDTIRQIGILNSRPDAPVHWQLSVQTHKWAGIE"
     gene            complement(5375..5451)
                     /locus_tag="WHR98_000961"
     tRNA            complement(5375..5451)
                     /locus_tag="WHR98_000961"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5415..5417),aa:Pro,seq:cgg)
     gene            complement(5532..6617)
                     /gene="nagZ"
                     /locus_tag="WHR98_000962"
     CDS             complement(5532..6617)
                     /gene="nagZ"
                     /locus_tag="WHR98_000962"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HEZ2307656.1"
                     /translation="MTVPHIPRGPVMADIAAFRLTEEEKQRLLDPAVGGVILFRRNFQ
                     NIAQLKELTAEIKALRTPELIIAVDHEGGRVQRFIEGFTRLPAMSTLGEIWDKDGASA
                     AETAAGQVGRVLATELSACGIDLSFTPVLDLDWGQCAVIGNRSFHRNPEAVARLALAL
                     QKGLAKGGMKSCGKHFPGHGFVEGDSHLVLPEDRRSLSELEAADLAPFHIMSREGMAA
                     VMPAHVVYPQVDTKPAGFSEIWLKQILRRDIGFKGVIFSDDLTMEGACGAGGIKERAR
                     ISFEAGCDIVLVCNRPDLVDELREDFRIPDNPALAQRWQYMANTLGSAAAQAVMQTAD
                     FQAAQAFVAGLASPQDTAGGVKVGEAF"
     gene            complement(6674..8194)
                     /locus_tag="WHR98_000963"
     CDS             complement(6674..8194)
                     /locus_tag="WHR98_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEZ2307657.1"
                     /translation="MQLIDYSHSFFSVVPPFLALALAVITRRVLLSLGIGILVGVAFL
                     VGGNPVDGLTHLKDMVVGLAWSDGDWSLGKPKILVFLILLGIFTSLLTYSGSNQAFAD
                     WAKRHIKNRRGAKMLTACLVFVTFIDDYFHSLAVGAIARPVTDKFKVSRAKLAYILDS
                     TAAPMCVLMPVSSWGASIIATLAGLLVTYKITEYTPMGTFVAMSLMNYYALFALIMVF
                     VVAWFSFDIGSMARFEQAALNEAHDETAVSDGSWGRVYALIIPVLALIASTVSAMIYT
                     GAQASETFSILGAFENTDVNTSLVFGGTCGVLAVVLCTIGTIKTADYPKAVWQGAKSM
                     FGAIAILILAWLISTVVGEMHTGDYLSTLVAGNIHPGFLPVILFLLASVMAFATGTSW
                     GTFGIMLPIAAAMAVKVEPALIIPCMSAVMAGAVCGDHCSPISDTTILSSTGARCNHI
                     DHVTSQLPYALTVAAAAASGYLALGLTKSALLGFGTTGIVLAVLIFLLKDKKRANA"
     gene            complement(8397..9896)
                     /locus_tag="WHR98_000964"
     CDS             complement(8397..9896)
                     /locus_tag="WHR98_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HEZ2307658.1"
                     /translation="MFKKYQYLALAALCAASLAGCDKAGSFFGADKKEASFVERIKHT
                     KDDGSVSMLLPDFVQLVQSEGPAVVNIQAAPAPRTQNGSSNAETDSDPLADSDPFYEF
                     FKRLVPNMPEIPQEEADDGGLNFGSGFIISKDGYILTNTHVVTGMGSIKVLLNDKREY
                     TAKLIGSDVQSDVALLKIDATEELPVVKIGNPKDLKPGEWVAAIGAPFGFDNSVTAGI
                     VSAKGRSLPNESYTPFIQTDVAINPGNSGGPLFNLKGQVVGINSQIYSRSGGFMGISF
                     AIPIDVAMNVAEQLKNTGKVQRGQLGVIIQEVSYGLAQSFGLDKAGGALIAKILPGSP
                     AERAGLQAGDIVLSLDGGEIRSSGDLPVMVGAITPGKEVSLGVWRKGEEITIKVKLGN
                     AAEHIGASSKTDEAPYTEQQSGTFSVESAGITLQTHTDSSGGHLVVVRVSDAAERAGL
                     RRGDEILAVGQVPVNDEAGFRKAMDKAGKNVPLLIMRRGNTLFIALNLQ"
     gene            complement(10034..10663)
                     /gene="nth"
                     /locus_tag="WHR98_000965"
     CDS             complement(10034..10663)
                     /gene="nth"
                     /locus_tag="WHR98_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEZ2307659.1"
                     /translation="MNRQIRQEIFERFRAANPHPTTELNFNSPFELLIAVLLSAQATD
                     VGVNKATAKLFPVADTPQAMLDLGLDGVMEYTKTIGLYKTKSKHIMQTCRILLEKYKG
                     EVPEDREALESLPGVGRKTANVVLNTAFGHPVMAVDTHIFRVSNRTKIAPGKDVREVE
                     DKLMRFIPKEFLMDAHHWLILHGRYTCKALKPQCQTCIINDLCEYPAKA"
     gene            complement(10709..11116)
                     /locus_tag="WHR98_000966"
     CDS             complement(10709..11116)
                     /locus_tag="WHR98_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEZ2307660.1"
                     /translation="MMPAYAALAFSAFTSATLLPGTSEAAFALFVHRFPEHAYGALLC
                     AGLANGLGSMVSYWMGRLLPSRKMPSEKTLNLMRRFGIWLLAFAWLPVVGDALPLAAG
                     WLRLNPWTSGLMLVVGKMARYAFILWGMQYYAA"
BASE COUNT         2602 a         3013 c         3119 g         2422 t
ORIGIN      
        1 gttttttcga tacggaaccg gatagaggaa aaatcgaaca ttgcgcctgc cttgctatga
       61 ttcacgaaga aatctgcgcc atgcctatgg gctatgaaac cttgatcggc gatatgggca
      121 gcgcactgtc aggcggacaa aaacaacgca tcgtattggc gcgggcctta tattgcgaac
      181 cgaaaatcct atttttagat gcagcgacca gccatttgga tattgccaat gaaaaagcag
      241 tcaatgcaaa cttgaatggc ttgtctatca taaaaattat ggcggcacac agaaaggaaa
      301 cggtggaatc agcagatagg aaaatgtctt taggataaaa atacagtttc aaaaatactc
      361 aagattgctg ctgttttttc gcctgagcgt caaactccgc cagcgtcatg ttcaaagtct
      421 gcaaacacgg catcattacc gcatcgacag cttggttcac atgatccctt tccacaggca
      481 acggacggta aacgaagagc ttgaagagtt cgttcaactc aatcgaatcc gcccccgttt
      541 tcaacaccca accctgtctg ccggaataga tgtagccgtg ccgcgccagc ttttccaaaa
      601 gctcgcccaa ctcgtcgtag cccatattga tatgccgtct gaactcctga acaggcaagg
      661 ctttgccttc tttttgcgcc gcatccagaa gcagcaggat tttcaacacg tcgtcgaacc
      721 gtccgcgcga gtcgaagccc ctgcggaacg cttctccccg ccagtaggag agtgaagaag
      781 tcagcaccgc gccgcccaag accagcgtcc acaacaggtt cagccacaac agaaaaaacg
      841 gcacggcggc aaacgcgccg taaatcgagc ggtagccgtc gaagttgccc atataccaag
      901 tgaagaggga acgtgcggtt tccagacaga acgctgttgc caaagccccg acaaacgcct
      961 gccgcgcggg aacgaagcgg tttggcacga agcggtacag cccccacagc aaaagcgtca
     1021 tgaaggtcag cgtcgccgcc gttcgcaacg cgcccgacca ctgcggcgca cctgaggcaa
     1081 gcgcggcatc ctgtaccgag ccgaccataa aggaaatgcc cacgcccaaa gacagcggcc
     1141 cgaacgtcag taaagcccaa tagacgagaa actgcatcat ccacggacgc tgggaattga
     1201 cccgccagat gcggttgaac gtattgtcta tcgtccgaat cagcatcagc gaggtaacga
     1261 ccagcatcac gctgccgatt gccgtcagcc ggttcgcctg ctcgcggaac gcattgatat
     1321 agtcgaacac catgtccgcg ccctgcggca caatggtttg gttgacgaag gagacgaacg
     1381 aatccgacca gcggtcgaac acggggaaaa tcgaagcgac cgccaccatc acggtcagca
     1441 cggggacgag tgccagcagc gtcgtaaacg tcatgcttgc cgccgcctgc ggtacgcgtt
     1501 cttcatcaaa gcggcggacg acgaaccatg caaacgcaca gattttattg tctgccaaac
     1561 cttgcaaacg ttgtaaaaag gtcataattt cttgcccggt cagtaagttg ggcattgatg
     1621 cccgatgtta tagccaattt tgccgtcagg aacaaatgcc tgaactgcgg ctgtttcaga
     1681 cggcatcgga acaactgtta tgccgtctga agaccgaacc attttaacgg aatccgccca
     1741 tgaacccaaa tccccctcaa aatcctcgtc ctctactatt tccaaaacgg cagcacccga
     1801 aatcccgccc gccgaatcgc tcgcggcatc gacagcgttg aaggttgcga agccgtattg
     1861 cgcaccgtcc ccaaagtctc cgccgtctgc gaagccgtca aaaaagatat tcccgacagc
     1921 ggctcccgtc ctgaccgccg aagaaaacaa tatcgccttc gcacaaagca aacgcttggc
     1981 ggaactcgcc gtcaagtcgg cataagccgc gtgttcagac ggcatggcgt tcagatgccg
     2041 tctgaacacg tttgcctgta taatccgcgt ctttactgtc caacttcgcg gttcgcaaac
     2101 ctcccgcgtt accaaaacta ggattcgata tgtcaaacca aaaagccttg gtcatctttt
     2161 cgggcggtca ggattcgacc acctgcctga ttcaggcaat ccaaatctac gggcgcgaaa
     2221 acgtccaagc cattactttc caatacgggc aacgccatgc cgtcgagctg gaacgtgccc
     2281 gctggattgc gcaggatttg ggcgtcaaac aaaccgtact cgacttgagc ctgatgcggc
     2341 agattacgca caatgccctg atggacgaca ccgccgccat cgaaactgcc gaaaacggcg
     2401 ttccgaatac ctttgtagac ggccgcaacg cgcttttcct gctctatgcc gcgatttacg
     2461 ccaaagggca ggggatacgg cacatcatcg cgggcgtgtg cgaaaccgac ttctccggct
     2521 atcctgactg ccgcgacgtg ttcgtcaaat ccatgaacgt tacccttaat ctggcgatgg
     2581 actatgattt ccaaatccac acgccgctga tgtatctgac caaggcgcaa acttgggcgt
     2641 tggcggacga aatgggcgtg ctggactata tccgcgagca aacccacacc tgctataacg
     2701 gcatcgtcgg cggctgccgc gaatgcccga gctgtatctt gcgcgaacgc gggctggcgg
     2761 aatatctgga aagtaaaaag gccgtctgaa cacgcgcaaa ccataaggaa tacgatatgc
     2821 ccaagctcca tatgttttac ctcggcggca atgccggcag gtcgaatatc gaagtgcacg
     2881 acatccaatt tgccgtgtgc gacgactacc gtgaagccgt ccccgcactc aaagccgcgt
     2941 ggttcggcga tgcggacaaa atccacatcg acggctggca ggttgtcgaa tgggcggacg
     3001 gttacgacat cgccgtatcc gaaacgccca aaacggaaat gccgtctgaa cacgccccgc
     3061 gcctgtattt tgccaatgtc ggcggttatc gcgcagggca gctcgccgaa gcgcacgctt
     3121 ttgggctgtt cgccgccgcc acgcctgccg aagccaaaca aaaagccctg caaaccctgt
     3181 tgaccgacag ctatgttcag caacataaag acaacttaaa agacgtggac aacctgcttg
     3241 cgctcgaccg catcggcaat ttccatatcc gcctgacccc gaatccgcac ggcaaacccg
     3301 ccgaaatcgg ctttcaaggc tatttgccca tttgagaacc catgaaaatc accaaaatct
     3361 tcaccttcga ctcctcgcat atgctcgacg ggcatgacgg caaatgccaa aacctgcacg
     3421 ggcataccta caaactcgaa atcaccgttt cagacgaccc cgtcagaggc gggccgaaag
     3481 acggtatggt gatggacttt accgacttga aagccattgt caaacaacac attaccgacc
     3541 ccttcgacca cgccttcatc taccacggcg gcaacgggcg cgaatctcaa atcgccgcac
     3601 tcttggaagg ctggaacatg aaaaccctgc gcctgccctg ccgcaccact gccgaaaata
     3661 tggcggtcga aatgtacgac cgtctgaaaa acgcggggct gaacgtgtgc cgcgtcaaat
     3721 tgtgggaaac gccgacatcg tgtgcggagt atgaagggga gtagggaata tcttgaacgt
     3781 atcgatatag taaattccaa taagacatgc ccaaccgcgt cattcccgcg caggcgggaa
     3841 tccagacctt gatttatcag gaatatttaa aaattgcagc aattccaact ctctggattc
     3901 ccgcctgcgc ggaaaggacg gtttagagcg tccttatttg aatttaccgt aaaacggttt
     3961 tttctcctgt acggattccc cgttttttca gacgaccttc catatcaaat acacccatta
     4021 aaaggaatac ccatgaaact cctcttcatc ctcctagtcc tcttcgtcgc cgtcgaacat
     4081 ttctacatcg cctggcttga aatgacacag attcccagcg aaaaagcggc ggaaatattc
     4141 aagctgcctt atgaatttat ggaacaaaag caagtgcaga ccttgttcag taatcaaggg
     4201 ctgtataacg gctttctcgg catcgggctg gtgtggtcgc ggtttgccgc gccggacaac
     4261 gccgtttacg gcgcgacgac tctgtttctc ggtttcgtat tgattgccgc cgcgtggggc
     4321 gcgttttcgt ccggcaacaa aggcatactc gtcaaacaag gactgcccgc gatgctggcg
     4381 gcggcagcgg tgttggcggt atgaaaaaaa tcaatgttgc ccccgaaaat ccgcaatacc
     4441 gtatcgtcga aattttcgag agcctgcaag gcgaaggctg gaacacgggc atgcccgccg
     4501 ttttcgtccg cttgggcaaa tgcaatctgg cgtgcggctg gtgtgatacc gattatttga
     4561 cattcggtat gatgggcttg tccgatatct taggccgtct gaaaacctac gccgcccgca
     4621 acatcatcat caccggcggc gagccgacca tacagccgca tctcgatatg ctgctggaca
     4681 cgctcaaggc ggaaggctat ttcctctgtc tcgaaaccaa cggactcaat cccgcgccgc
     4741 cgcaaatcga ctacgtcgcc accagcccca aagcctgcta cgccgccaaa tatgaaaata
     4801 gctgtatcga aacagccgac gaagtgcgga ttgttgccga tggtgatgtc cttgcgttct
     4861 gcgaaaacat ggaacgcaaa atccgcgcac atcattacta cctttcgccc tgtgagcaag
     4921 acggtgcgat gaacatctac gacaccatcc gccaaatcgg tattttaaac agtcgccccg
     4981 acgcgccggt gcattggcag ttgagcgtgc agacgcacaa atgggcggga atagagtagt
     5041 ttaagcagtg taactcaaag ggccggcgta ccgttttgcc gatgtctaac atatgggaaa
     5101 agtgtgccgc ttccgcgtga aactgcccac atttccgctg cctgattgag gcggaacctt
     5161 actgaataag atgccgccgt tgggtacaag cccggcttcc taaattccga tggtcttttg
     5221 aaccttgccg ataccctttg tcagtgcacg caaatagaag ggttagggaa aacgaaatgc
     5281 cgtctgaaac agaatgctgt ttcagacggc atttttctgt tgacgccaaa agggaaaaac
     5341 cgccccggca atccatgccg aggcggtttg aatatggtcg gaatgagagg attcgaacct
     5401 ccgacccctt cgtcccgaac gaagtgcgct accgggctgc gctacattcc gaattaggta
     5461 aggcgtgatt atagcgcaaa aaatacggcg tgcctatacc gttttgcctt tttgcaacgt
     5521 gccgggcgga tttaaaaggc ttcgccgact ttcacgccgc ccgccgtgtc ctgtggcgag
     5581 gcaaggccgg caacaaaggc ttgcgccgct tggaaatccg ccgtctgcat cacggcttgc
     5641 gcggcggcac tgccgagcgt gttggccata tattgccaac gttgcgccaa agcgggattg
     5701 tcgggaatgc ggaaatcttc gcgcagttcg tccacaaggt cgggacggtt gcagacgagg
     5761 acgatgtcgc aacctgcctc aaaggaaatg cgggcgcgtt ctttgatgcc gccggctccg
     5821 catgcgcctt ccatggtcaa atcgtcagag aaaatcacgc ctttgaatcc gatgtcgcgg
     5881 cgcaaaattt gtttgagcca gatttcggaa aaccctgcgg gctttgtgtc cacttgtgga
     5941 taaacgacgt gggcgggcat aaccgccgcc ataccttcgc ggctcataat gtggaagggg
     6001 gcgaggtcgg cggcttcgag ttcggacagg ctgcgcctgt cttccggcaa gaccagatgg
     6061 ctgtctcctt cgacaaatcc gtgtccggga aaatgtttgc cgcaggattt cataccgcct
     6121 tttgccaaac ctttttgaag ggcgagggcg aggcgtgcga ccgcttcggg gttgcggtgg
     6181 aagctgcggt tgccgatgac ggcgcattgt ccccagtcca aatctaagac gggcgtgaag
     6241 gacaaatcga tgccgcaggc ggaaagctcg gttgccaaaa cccggccgac ttgtccggcg
     6301 gcggtttcgg cggcggacgc gccgtctttg tcccaaatct cgccgagcgt actcattgcg
     6361 ggcaggcggg tgaagccttc gatgaaacgt tgcaccctgc cgccttcgtg atcgacggcg
     6421 ataatgagtt cgggtgtgcg cagggctttg atttcggcgg tgagttcttt gagctgtgcg
     6481 atattttgga agttgcggcg gaagaggatg actccgccga cggcgggatc gagcaggcgt
     6541 tgcttttcct cttcggtcag gcggaaggcg gcaatgtctg ccatgacggg gccgcgcgga
     6601 atatggggga cggtcattgc ggtttgctcc aaaaagcttc agacggcata tgccgtctga
     6661 acagggaaag gggtcaggcg ttggcgcgtt ttttatcttt caacagaaaa atcagcaccg
     6721 ccaatacaat gcctgtcgtg ccaaaaccca acagcgcgga ttttgtcaga cccaatgcga
     6781 ggtagcccga tgcggcggcg gcggcaacgg ttaaggcgta aggcagttgc gaggtaacgt
     6841 ggtcgatgtg gttgcagcgc gcgcctgtgg acgacaggat ggtcgtgtcg gagatgggcg
     6901 aacagtggtc gccgcatacc gcccccgcca ttactgcgga catacacggg ataatcagcg
     6961 cgggttcgac tttgaccgcc atggcggcgg caatcggcag cataatgccg aacgtccccc
     7021 agcttgtgcc tgtggcaaac gccatcacgc tggcgagcag gaagaggatg acgggcagga
     7081 agccgggatg gatgttgccc gcaaccagtg tggagaggta gtcgcccgtg tgcatttcgc
     7141 cgacaaccgt actgatgagc caggcaagga ttaaaatggc gattgcgccg aacatagatt
     7201 tcgcaccctg ccaaacggct ttgggatagt cggcggtttt aatcgtgccg atcgtgcaga
     7261 gaacgacggc aaggacgccg caagtgccgc cgaataccag cgaagtgttc acgtcggtat
     7321 tttcaaatgc ccccaaaatg ctgaaggttt cgcttgcctg tgcaccggtg tagatcatgg
     7381 cggaaaccgt tgaggcgatt aaggccaaaa cgggaataat caatgcgtaa accctgcccc
     7441 agctgccgtc tgaaacggca gtttcatcgt gggcttcgtt caacgcggct tgttcgaaac
     7501 gtgccatcga gccgatgtcg aaggagaacc atgcgacgac gaacaccata atcagggcaa
     7561 acagtgcgta atagttcatc aggctcatgg cgacaaacgt ccccatcggc gtgtattcgg
     7621 tgattttgta ggtaacgagc agtccggcaa gcgtggcgat aatcgacgcg ccccagcttg
     7681 aaacgggcat cagcacgcac ataggcgcgg cagtggagtc gaggatgtag gcgagtttgg
     7741 cgcgggaaac tttaaacttg tcggtaacgg ggcgggcaat cgcaccgacg gcgagactgt
     7801 ggaaatagtc gtcgataaag gttacgaaca cgaggcaggc ggtcagcatt ttcgcgccgc
     7861 gccggttttt aatgtgccgt tttgcccagt cggcaaacgc ctgattgctg ccggagtagg
     7921 tcagcaggga agtaaaaata cccaaaagta tcaggaaaac caagattttt ggtttgccca
     7981 gcgaccaatc gccgtctgac caagccaagc cgacgaccat gtctttcagg tgtgtcagac
     8041 cgtcgacggg gttgccgccg accaaaaagg caacgccgac cagaataccg atgcctaaag
     8101 acagcagtac gcggcgggta atgacggcca gtgccagtgc caaaaagggt ggcacaaccg
     8161 agaaaaatga atgtgaatag tcgatcagct gcatggttta cgggggtgtt aagcgtccgg
     8221 atgggagcgt atctgtccgc ctccggtttg ggttttgttg gcaaaatggg cggaaatatt
     8281 ttttgtcgta aaaaatattt gtttaaaatc aaccaactga tttttgtaaa atgcccgtta
     8341 atcggtattg acgggcattt tatcatttaa aaaatatttt ggttaaatta tgtgtgttat
     8401 tgcaggttta atgcgataaa cagcgtgttg ccacggcgca tgatcagcag ggggacgttt
     8461 ttgcctgcct tgtccatagc tttgcggaaa ccggcttcgt cattgacggg gacttgcccg
     8521 acggcgagga tttcgtcgcc gcgcctcaag cctgcgcgtt ctgccgcgtc ggaaacccgt
     8581 acgacgacga ggtgtccgcc gctgctgtcg gtatgtgtct gaagggtaat gcctgcggat
     8641 tcgaccgaga acgtaccgga ttgctgttcg gtgtaggggg cttcatctgt tttggatgat
     8701 gcgccgatat gctcggcggc gttgcccagc ttgactttga ttgtgatttc ttcgcctttg
     8761 cgccatacgc cgaggctgac ttcttttccc ggcgtaatgg cgccgaccat aacgggaagg
     8821 tcgccggaag aacgtatttc tccgccgtcg aggctgagga cgatgtcgcc cgcctgcagg
     8881 ccggcacgtt ctgcggggct gccgggcagg attttggcaa tcagtgcgcc gccggctttg
     8941 tccaaaccga acgattgtgc caaaccgtag gatacttctt gaataatcac gcccagttgt
     9001 ccgcgttgga ctttgccggt gtttttcagc tgttcggcga cattcatggc aacgtcaatc
     9061 gggatggcga aggaaatgcc catgaatccg ccgctgcggc tgtatatttg cgagttgatg
     9121 ccgacgacct gtccttttaa gttgaacagc gggccgccgg agttgcccgg attgatggca
     9181 acgtcggttt ggatgaaagg tgtgtagctt tcgttgggca ggcttctgcc tttggcggac
     9241 acgatgccgg cggtcacgct gttgtcgaag ccgaagggcg cgccgatggc tgcgacccat
     9301 tcgcctggtt tcaaatcttt gggattgccg attttgacga cgggcagctc ttccgttgcg
     9361 tcgattttca gaagggcgac atcggattgg acatccgaac cgatgagttt ggcggtatat
     9421 tcgcgcttgt cgttgagcag gactttgata ctgcccatgc cggtaacgac gtgcgtattg
     9481 gtcagaatat agccgtcttt gctgatgatg aagcccgaac cgaagttcaa tccgccgtca
     9541 tctgcttctt cttgggggat ttcgggcatg ttcgggacga ggcgtttgaa aaattcgtag
     9601 aacgggtcgc tgtcggcaag cgggtcggaa tcggtttcgg cattgctgct gccgttttgg
     9661 gtgcgcgggg cgggggctgc ctgaatattg acgactgccg ggccttcgct ttgaaccagt
     9721 tggacaaagt cgggcagcag catactgacg ctgccgtcgt ctttggtgtg tttgatgcgt
     9781 tctacgaagg atgcttcttt tttgtccgca ccgaaaaagc tgccggcttt gtcgcagcct
     9841 gccagcgagg cggcacacag tgctgccaaa gcgaggtatt ggtatttttt gaacacgttt
     9901 tgtcctttgt cggatgccgg taccggcttt aatgccgtct gaagcgcatt ttgtcggctt
     9961 cagacggcat aggttgaaat tctacaacgt ccgtccgaat tttcaagcgt ttcattttga
    10021 agggcggcgg cagtcaggct ttggcgggat attcgcacaa atcgttgatg atgcaggttt
    10081 ggcattgcgg tttgagtgcc ttgcaggtgt agcgtccgtg caaaatcagc cagtggtgcg
    10141 cgtccatcag aaattcttta ggaatgaagc gcatcagttt gtcttcgact tcgcgcacat
    10201 ctttcccggg tgcgattttg gttcggttgg acacgcggaa aatatgcgta tcgaccgcca
    10261 taacggggtg tccgaacgct gtgttcaata ccacgtttgc cgttttgcgc cccacgcccg
    10321 gcaacgattc caaagcctcg cggtcttccg gcacttcgcc cttgtatttt tccagcagga
    10381 tgcggcaggt ctgcatgatg tgcttggact tggttttata caacccgatg gttttcgtgt
    10441 attccatcac gccgtccaag cccaaatcca gcattgcctg cggcgtatcg gcaaccggaa
    10501 acagcttcgc cgtcgccttg tttacgccga catcggtcgc ctgcgctgaa agcagaacgg
    10561 cgattaaaag ctcgaaaggg gagttgaaat tcagctcggt ggtcggatgg gggttggcgg
    10621 cgcggaaacg ctcgaagatt tcttggcgga tttgtctgtt cattttttta tacggtaggt
    10681 ttgtgcggtc ggcattataa cgcacggttc aggcggcgta atattgcatt ccccacagga
    10741 taaaggcgta acgcgccatc ttgccgacaa ccagcatcag cccgcttgtc cacggattca
    10801 accgcagcca gccggcggca agcggcagtg cgtcgccgac gacgggcagc caggcaaacg
    10861 caagcagcca aataccgaaa cgccgcatca gattcagtgt tttttcagac ggcatttttc
    10921 gggaaggcag caaacgtccc atccaatagg aaaccatact gcccaatccg ttggcaaggc
    10981 cggcgcacag caacgcgccg tatgcgtgtt cgggaaagcg gtggacgaac agggcaaagg
    11041 cggcttcgga tgtgccgggc aggagggtgg cggaagtgaa ggcggaaaag gcgagtgcgg
    11101 cgtaggcggg catcattgca aacagtctca aacaggcaaa aatcggcgac ggattg
//
LOCUS       DAWGNT010000051        11101 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.051, whole genome shotgun sequence.
ACCESSION   DAWGNT010000051 DAWGNT010000000
VERSION     DAWGNT010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11101
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.051"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(81..1226)
                     /gene="dapE"
                     /locus_tag="WHR98_000967"
     CDS             complement(81..1226)
                     /gene="dapE"
                     /locus_tag="WHR98_000967"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEZ2307661.1"
                     /translation="MTETQSLELAKELIARPSVTPDDQNCQKLLAERLHKIGFAAEEL
                     HFGDTKNIWLRRGTKAPVVCFAGHTDVVPTGPVEKWDSPPFEPTERDGRLYGRGAADM
                     KTGIACFVTACERFVAEHPDHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYC
                     IVGEPTAVDKLGDMIKNGRRGSLSGNLTVKGRQGHIAYPHLAVNPVHTFAPALLELTQ
                     EVWDEGNEYFPPTSFQISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAI
                     LDKHGVQYDLQWSCSGQPFLTHAGKLTDVARAAIAEICGVETELSTTGGTSDGRFIKA
                     IAKELIELGPSNATIHQINENVRLNDIPKLSAVYEGILARLLAGNAV"
     gene            complement(1339..1959)
                     /locus_tag="WHR98_000968"
     CDS             complement(1339..1959)
                     /locus_tag="WHR98_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HEZ2307662.1"
                     /translation="MLTPKSCDLFNIPFFQFSQLKKYQPESIPQIKADYKENWQIWQQ
                     LIQQVAAELGAPFAPPHIERWCNGWQVRAHFFAYFKYEQYKNSAAILSILLNRRRLSV
                     SLDWHCYKADVSPIALPDYNRWLDNFDTEKYASFDMWHGAESEYDDYRTVAQQNESDR
                     KLQNDEDFFCIGKHIERDDLGRQDVAKWIAETVEDLLPLYEACHGK"
     gene            complement(1993..2502)
                     /locus_tag="WHR98_000969"
     CDS             complement(1993..2502)
                     /locus_tag="WHR98_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEZ2307663.1"
                     /translation="MNPFETKSVTFAEPIEMLYACHGKVRRFCGQVAMLSDYIAENGC
                     NQLVLQTIRQIARYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDELLRQHVSLHGN
                     WDAVAAEFAKLEADNAYVPDEEAFKRFVAGYDVHLAIEEPLFDMGNTFIPKEKLTEIG
                     EIMAARRRK"
     gene            complement(2595..3146)
                     /gene="azu"
                     /locus_tag="WHR98_000970"
     CDS             complement(2595..3146)
                     /gene="azu"
                     /locus_tag="WHR98_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="azurin"
                     /protein_id="HEZ2307664.1"
                     /translation="MKAYLALISAAVIGLAACSQEPAAPAAEATPAAEAPASEAPAAE
                     AAPADAAEAPAAGNCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKASMGH
                     NLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLTLDPAKLADG
                     EYKFACTFPGHGALMNGKITLVD"
     gene            complement(3427..3849)
                     /locus_tag="WHR98_000971"
     CDS             complement(3427..3849)
                     /locus_tag="WHR98_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HEZ2307665.1"
                     /translation="MNLEQLGRRDALLSGLLKQAGQWRRLDAAVKKLLPANLHPHFQT
                     ACIEDGRLVLLAANNMAASRLKMIAPSVLPQLAGLDASIRSVSVRLVPKPEKPPKTNT
                     LHLSKAALESFGSAAVKLEKRHPELAEALANLVRRHGA"
     gene            3980..6730
                     /gene="secA"
                     /locus_tag="WHR98_000972"
     CDS             3980..6730
                     /gene="secA"
                     /locus_tag="WHR98_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEZ2307666.1"
                     /translation="MLTNIAKKIFGSRNDRLLKQYRKSVARINALEEQMQALSDADLQ
                     AKTAEFKQRLADGQTLDGILPEAFAVCREASRRTLGMRHFDVQLIGGMVLHDGKIAEM
                     RTGEGKTLVATLAVYLNALAGKGVHVVTVNDYLASRDAGIMEPLYNFLGLTVGVIISD
                     MQPFDRQNAYAADITYGTNNEFGFDYLRDNMVTDQYDKVQRELNFAVVDEVDSILIDE
                     ARTPLIISGQADDNIQLYQIMNTVPPHLVRQETEEGEGDYWVDEKAHQVILSEAGHEH
                     AEQILTQMGLLAENDSLYSAANIALMHHLMAALRAHSLFHKDQHYVIQDGEIVIVDEF
                     TGRLMSGRRWSEGLHQAVEAKEGVEIKRENQTLASITFQNYFRLYTKLSGMTGTADTE
                     AFEFQSIYNLETVIIPTNRPVQRKDFNDQIFRSAEEKFEAVVKDIEECHKRGQPVLVG
                     TTSIENSELVSHLLQKAGLPHNVLNAKEHEREALIVAQAGKVGAITVATNMAGRGTDI
                     VLGGNLKHQTDAIRADEALSDEEKQAQIAALEDGWQAEHDKVMEAGGLHIIGTERHES
                     RRIDNQLRGRSGRQGDPGSSRFYLSFEDPLLRLFALDRAAAILNRLAPERGVAIEHNL
                     LTRQIEGAQRKVEGRNFDMRKQVLEYDDVANEQRKVIYSQRNEILTSKDISDLMQEIR
                     SDVVSDLVDTYMPPDSMEEQWDIPTLENRLAAEFRLHEDIQSWLKADNAIDGQDIKER
                     LIERIENEYAAKTELVGKQAMADFERNVMLQVIDNQWREHLAAMDYLRQGIHLRSYAQ
                     KNPKQEYKREAFTMFQDLWNGIKFHIASLLTSVQIEQNPVALVEEQPIGNIQSIHSES
                     PDMEELLGQSQTDLVTEAFNPDGTDFSPEALEARGQIVHRNDPCPCGSGLKYKQCHGK
                     LA"
     gene            6876..8648
                     /locus_tag="WHR98_000973"
     CDS             6876..8648
                     /locus_tag="WHR98_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEZ2307667.1"
                     /translation="MIPSDFIDELLAKTDIVDIIDEQVPLKKGGANYMACCPFHKEKT
                     PSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQND
                     NPEVRAERKKKQQTLEETAAAAADFYAQQLKFNPTAKAYLDKRGLSAEVIAHYGLGYA
                     PDGWQPLAQVFQPYPNTALVDTGMVIDNEGRYYDRFRHRIMFPIRNPRGQVIGFGGRV
                     LDDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEAGRILVVEGYMDVVALAQFGVGY
                     GVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFL
                     FLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGINLNTQEGKAELVKTS
                     SPLLAQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEAPKRHVKQKNYKLPPISVKQ
                     PVMPTLVQRQIRSLLINPDWAAYIDLPDYLALDGDFACLANLAETIKNHPSVPATAQV
                     LEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNKLKYSQIETLKQ
                     KSLQSGLNESEKKLLLSLLTAKQN"
     gene            8835..10763
                     /gene="rpoD"
                     /locus_tag="WHR98_000974"
     CDS             8835..10763
                     /gene="rpoD"
                     /locus_tag="WHR98_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEZ2307668.1"
                     /translation="MSKNQNHEEYQDDARPLTIEEQRARLRQLIIMGKERGYITYSEI
                     NDALPDDMSDADQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAAVTDDDAVEEAEAA
                     LSSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSI
                     AEILELIEKIRKDEIRVDEVVEAIIDPNEVLLNELGLGHLETTAPEKPSNDNSDENED
                     DEESEEDADEISAANLAELKQKVIGHFAQIEKDYKKMIGRLEKHHSRHKDYLAYRDAI
                     ANKLLEVRFATRQIDSLSSSLRRKVENIRKLEREIRDICLDRVHMERDYFIQNFLPEI
                     TNLEWIEEEIAKGRVWSDALDRFRHAILEKQTELADMEKETRISIEELKEINKNMVSS
                     EKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK
                     FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLA
                     ELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHE
                     VTKEILESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRH
                     PTRSDRLRSFLDSEDSKL"
     gene            10910..>11101
                     /locus_tag="WHR98_000975"
     CDS             10910..>11101
                     /locus_tag="WHR98_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
                     /protein_id="HEZ2307669.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEQYLNRQRIR
                     YVRDHRGRPTYPLLSMFKAV"
BASE COUNT         2899 a         3106 c         2729 g         2367 t
ORIGIN      
        1 aatttaatcc actatatctc aaacccacat taggtctaat caaatggtcg gacatccata
       61 tccgacagcc cattttcttt tcagacggca tttccagcca acaagcgcgc caatatcccc
      121 tcatacaccg ccgacagctt cggaatgtcg tttagccgca cgttttcgtt gatttggtgg
      181 atggtcgcat tggacgggcc taattcgatg agttcttttg caatggcttt gatgaagcgt
      241 ccgtccgaag tgccgccggt ggtggacaat tcggtctcta cgccgcagat ttcggcaatg
      301 gcggcgcgtg ccacgtcggt cagtttgccc gcgtgggtca ggaagggctg ccccgaacac
      361 gaccactgca aatcgtattg cacgccgtgt ttgtccaaaa tggcgtggac gcgttgtttc
      421 agccctgctt cggtggactc ggtggagaag cggaaattga atttgacgtt cagctcgccc
      481 ggaatgacgt tggtcgcgcc tgtgccaccg ttgatattgg aaatttggaa actggtcggc
      541 ggaaagtatt cgttgccttc gtcccatact tcctgcgtca gctctaacaa ggcaggggca
      601 aaagtgtgga cggggttcac cgccaaatga ggataggcaa tatgcccttg cctgcctttg
      661 acggtcaggt tgcccgacag cgagccgcgc cggccgtttt taatcatatc gcccaatttg
      721 tccacggcgg tcggttcgcc gacgatgcag tagtcgataa gctcgtcgcg cgctttcaac
      781 acatcgacga ctttggtcgt accgtccagc gcgtcgccct cttcgtcgga agtaatcagg
      841 agcgcaatgc tgccttgatg gtcgggatgt tcggcaacga aacgttcgca ggcggtaaca
      901 aaacaggcga tgccggtttt catgtccgcc gcgccgcgcc cgtataatct tccgtcgcgc
      961 tcagtcggtt cgaacggggg cgaatcccat ttttcaacag ggcccgtcgg cacaacgtcg
     1021 gtatgccctg caaaacagac gacgggagct ttcgtgccgc gtcgcaacca gatgtttttg
     1081 gtgtcgccga aatggagttc ttcagccgca aaaccgattt tgtgcaggcg ttcggcaagc
     1141 agtttttggc aattttggtc atccggcgta acggacggtc gggcaatcaa ttctttggca
     1201 agctctaggg attgagtttc ggtcatattt gttcactttt gaaattagac cgtctgaaac
     1261 gttctgaatg tgattttcag acggcattta ggttaggttg gcatacgggg tgggtatttt
     1321 acccatcagt cttctgaatc atttgccgtg gcaggcttcg taaagcggca gcaaatcttc
     1381 caccgtttcc gctatccatt tcgcgacatc ctgcctgccc aaatcgtcgc gttcgatgtg
     1441 tttgccgatg cagaaaaagt cttcgtcgtt ttgcaacttt cggtcggact cgttttgttg
     1501 cgcgacggtg cggtagtcgt cgtattcgct ttccgcaccg tgccacatat cgaaagaagc
     1561 gtatttttcg gtatcaaaat tatccaacca gcggttgtaa tcaggcagcg cgatggggga
     1621 aacatcggct ttatagcagt gccaatccaa gctgacgctc agacggcggc ggttgagcag
     1681 tatcgacaaa atcgctgcgg aatttttata ttgttcgtat ttgaagtagg caaagaaatg
     1741 ggcgcgaacc tgccagccgt tacaccagcg ttcgatgtgc ggcggcgcaa acggcgcacc
     1801 caattcggcg gcaacctgct gaatcagctg ctgccatatc tgccagtttt ctttatagtc
     1861 agccttgatt tgcggaatgc tttcaggctg gtatttttta agctgggaaa attggaaaaa
     1921 cgggatattg aacaaatcgc aacttttcgg ggtcagcata atatatcctt gagacgattg
     1981 tttcagacgg cattatttgc gccggcgcgc cgccataatt tcgccgattt cggtcagttt
     2041 ttcttttggg ataaaggtgt tgcccatatc aaacagcggc tcttcaatcg ccaaatgaac
     2101 atcatatccc gccacaaaac gtttgaacgc ttcctcatcg gggacataag cgttgtctgc
     2161 ttcgagtttg gcaaattcgg cagccacggc atcccagttg ccatgtaggc ttacatgttg
     2221 gcgcaaaagc tcgtccacgc tttcttgggc ttgcggcgca tattgcagca gcagcgggaa
     2281 aaagttttct tcttcgtctt catggtgcag cggagcggca acgttgaaat accgggcgat
     2341 ttggcggatg gtttgcaaaa caagctgatt gcagccgttt tcggcgatat agtccgacag
     2401 catggcgact tgtccgcaga aacggcgtac tttgccgtgg caggcataca gcatttcaat
     2461 cggttcggca aaggtaacgc ttttggtttc aaacggattc atggttttta gattttattc
     2521 ttaaattaac gtttccagat tataacaaaa cagcctgctc aaggcaggct gtctgttttc
     2581 aagctttagg cgaattagtc aaccaaagta attttaccgt tcatcaaagc accgtgaccc
     2641 gggaaggtgc aggcaaattt gtattcgccg tcagccagtt tggcaggatc caaagtcagg
     2701 gaagactctt cgccgccgcc gatcagtttg gtgtgggcaa caacgcgcgc atcgtcaggt
     2761 ttgacatagt cggtatcggc agcacctacg ccgtctttaa atacgccgtc catgtcttca
     2821 gctttggcaa tcacgagatt gtgacccatg ctggctttgg gttgcgtacc ggtatgtttc
     2881 agagtgatgg tgaactcttt acatgctttg ctgacttgga tgtctttggt gttgaactgc
     2941 atattgtcgt tggattcgac agttgccgca cagttgccgg cagcaggggc ttcggcagca
     3001 tctgcaggag cagcttcggc ggcaggcgct tcggaagcgg gtgcttcagc agcaggagtt
     3061 gcctcggcag caggcgcggc aggttcttga gagcaggcag ccaaaccgat aacggcggca
     3121 gaaatcagag ccagatacgc tttcataaca aatctccaat cgataaaata atattcggtt
     3181 ttacagaaat caaagtgcaa ccgccattaa caaaaccttg aaaaagattc cgccgcgttg
     3241 cacaaacaga tgtttcggag cggcattttg ctacaaattt catttgaaat caaagcctgt
     3301 ctgcaagttt acaatcgttt actttaaaag gggcaatttt accccgaacc tatttcttta
     3361 gtattagacc cattatcctt tacttcttaa tattaacgga tgtttacaca agttcccgta
     3421 tacattttat gcgccatgcc ttctgaccaa gtttgccaat gcctccgcca attcgggatg
     3481 ccgtttttcc aactttaccg ccgccgaacc gaaactctcc agcgcagcct tactcaaatg
     3541 cagggtattg gttttcggcg gtttttccgg tttcgggacc agcctgaccg aaacagagcg
     3601 tatcgaagca tcaagccctg ccaactgcgg caataccgac ggtgcaatca ttttcaagcg
     3661 cgatgccgcc atattgtttg ccgccaaaag gacaagcctg ccgtcttcga tacatgccgt
     3721 ctgaaaatgc gggtgcaggt tggcaggcag cagttttttc acggcggcat ccaaccgccg
     3781 ccactgtccc gcctgtttca aaagtccgga aagcagcgcg tcccgcctgc ccaactgttc
     3841 caaattcata aaacatacac ccaaaaagat tgaaataccg caaacgcgcc tttatttcag
     3901 acggcattag cactttgcac aaacgcttgt gttaaaatcg cgttttcgcc cactattata
     3961 tcaggcgcag gaattattca tgctgacaaa cattgccaag aaaatcttcg gcagccgcaa
     4021 cgaccgcttg ctgaaacaat accgtaaatc cgttgccaga atcaacgcgc tcgaagaaca
     4081 gatgcaagcc ctaagcgatg ctgatctgca agccaaaact gccgaattca aacaacgcct
     4141 cgccgacggt cagactttgg acggcatttt gcccgaagcc ttcgccgtct gccgcgaagc
     4201 gtcccgccgc accctcggta tgcgccactt cgacgtgcag cttatcggcg gtatggtgct
     4261 gcacgacggc aaaatcgccg aaatgcgtac cggcgaaggc aaaaccctgg tcgccaccct
     4321 cgccgtctat ctcaacgcgc tggccggcaa aggcgtacac gtcgttaccg tcaacgacta
     4381 cctcgcctca cgcgatgcgg gcattatgga gccgctctat aatttcctcg gtctgaccgt
     4441 cggcgtgatt atttcagata tgcagccgtt cgaccgtcaa aacgcctatg ccgccgatat
     4501 cacctacggc accaataatg aattcggctt cgactacctg cgcgacaata tggttaccga
     4561 ccaatacgac aaagtgcagc gcgaattgaa ttttgccgtt gtcgatgaag tggattccat
     4621 cttgattgac gaagcgcgca ctccgctgat tatctccggt caggcggatg acaacatcca
     4681 gttgtaccaa atcatgaaca ccgttccgcc ccacctcgtc cgtcaagaga cagaagaagg
     4741 cgaaggcgac tattgggtcg acgaaaaggc acatcaggtc atcctgagcg aagcaggtca
     4801 cgaacacgcc gagcaaatcc tgacccaaat gggattgctg gcagaaaacg actccctcta
     4861 ttccgccgcc aatatcgccc tgatgcacca ccttatggcg gcattgcgcg cgcattccct
     4921 cttccacaaa gaccaacatt acgtcatcca agacggcgaa atcgtcatcg tggacgaatt
     4981 caccggccgg ctgatgtccg gccgccgctg gtcggagggt ctgcatcaag ccgtcgaagc
     5041 caaagaaggc gtggaaatca aacgcgaaaa ccaaaccctt gcctccatca ccttccaaaa
     5101 ctatttccgc ctgtacacca agctctccgg catgaccggc acagccgata ccgaagcttt
     5161 cgagttccaa agcatctaca acctcgaaac cgtcatcatc ccgaccaacc gccctgtaca
     5221 gcgcaaagac ttcaacgacc agattttccg ttccgccgaa gaaaaattcg aagccgtcgt
     5281 caaagacatc gaagaatgcc acaaacgcgg gcagcccgtc ctcgtcggta cgaccagcat
     5341 cgaaaactcc gaactggtct cccaccttct gcaaaaagcc ggactgccac acaacgtcct
     5401 caacgccaaa gaacacgaac gcgaagccct gattgtcgcc caagccggca aagtcggcgc
     5461 gattaccgtt gccaccaata tggcgggacg cggtacggac atcgttttag gcggcaacct
     5521 gaagcaccaa accgatgcca tccgtgccga cgaagccttg agcgacgaag agaaacaggc
     5581 acaaatcgcc gcactcgaag acggctggca ggcagaacac gacaaagtga tggaagcagg
     5641 cggtttgcac atcatcggta cggaacgcca cgaaagccgc cgcatcgaca accagttgcg
     5701 cggacgttcc ggccgtcagg gcgaccccgg atccagccgt ttctacctct cgtttgaaga
     5761 cccgctgctg cgcctattcg cactcgaccg cgccgccgcc atcctcaacc gcctcgcccc
     5821 cgaacgcggc gtcgccatcg aacacaacct gctgacgcgc caaatcgaag gggcgcaacg
     5881 caaagtcgaa ggcagaaact tcgatatgcg caaacaggtt ttggaatacg acgacgttgc
     5941 caacgaacag cgcaaagtca tttacagcca gcgcaacgaa attctgacca gcaaagacat
     6001 cagcgacctg atgcaggaaa tccgttctga tgtcgtcagc gacctcgtgg atacctatat
     6061 gccgcccgac agcatggaag aacaatggga catcccgact ttggagaacc gtctggctgc
     6121 cgaattcaga ctgcacgaag acatccaatc ctggctgaag gcggacaatg cgattgacgg
     6181 tcaagacatc aaagaacgcc tgatcgaacg catcgaaaac gaatatgccg ccaaaaccga
     6241 actggtcggc aagcaggcaa tggccgattt cgagcgcaac gtgatgttgc aggtcatcga
     6301 caaccaatgg cgcgaacacc tcgccgctat ggactacctg cgccaaggca tccacctgcg
     6361 cagctatgcc caaaaaaatc cgaagcagga atataaacgt gaagccttta ccatgttcca
     6421 agacctgtgg aacggcatca aattccatat tgcctccctg cttacctcgg ttcaaatcga
     6481 acaaaaccct gtcgcgctgg ttgaagagca acccatcggc aacatccagt ccatccattc
     6541 cgaatcgccc gatatggaag aacttttggg tcagtcgcaa accgatttgg ttaccgaggc
     6601 ctttaatccc gatggaacgg atttcagccc cgaagccttg gaagcgcggg gacaaatcgt
     6661 ccaccgcaac gacccctgcc cctgcggcag cggtttgaaa tacaaacaat gccacggcaa
     6721 actggcttga gcgtttgaac gcaaatgccg tctgaacatc cggtttccgg cttcagacgg
     6781 cattttgcct gaaccgccac atccgaccgc cattccgaaa aatcccgatt tcgtaccgtc
     6841 cgtaccaaaa acagacatcc cgtccgcccc acatcatgat tccatccgac ttcattgacg
     6901 agcttttagc caaaaccgat attgtcgaca tcatcgacga acaggttccg ctgaaaaaag
     6961 gcggggcgaa ctatatggcg tgttgcccgt tccacaagga aaaaacgccg tcgttttcgg
     7021 tcagtccgac caagcagttt taccattgtt tcagttgcgg ggcgcacggt tcggcgattg
     7081 gttttgtgat ggaacatcag gggctgtcgt ttccggaggc ggtgcagttc cttgccgacc
     7141 gcgtgggtat ggttgtgcct aaagtgcgcg ggcagaacga taatcccgaa gtccgtgccg
     7201 aacgtaagaa aaagcagcag acgctggaag aaacggcggc ggcggcggct gatttttatg
     7261 cgcaacagtt gaaattcaat ccgacggcga aggcttattt ggacaagcgc ggcttgagcg
     7321 cggaagtcat cgcgcattat ggtttgggct acgcgcccga cggctggcag cctttggcgc
     7381 aagtgttcca accgtacccg aataccgcgt tggtggatac gggtatggtg attgacaatg
     7441 aggggcggta ttacgaccga ttccgtcatc ggattatgtt ccccatccgc aatccgcgcg
     7501 ggcaggtaat tggtttcggc ggcagggtgc tggacgactc caaacccaaa tatctaaact
     7561 ctcccgatac gcctttgttc gataagggga aaaaccttta cggattgtat gaagggcgtg
     7621 ctgctgtcaa ggaagcgggg cggattctag tggtcgaagg ctatatggac gtggtcgcgc
     7681 tagcacagtt cggcgtgggc tacggcgtgg cggctttagg tacggcgaca acggcggaac
     7741 acgtcaaaat cctgatgcgt caggcggaca gtatttattt ctgtttcgac ggcgacagcg
     7801 cggggcgcaa agcggcttgg cgcgcgctgg aaaacgcgct gccgcagttg aaagacgaca
     7861 aatcgctgca ttttttgttc ctgcccgagg aacacgaccc cgacagttac atccgtgcct
     7921 acggcaaagc gcaatttgaa gacgcgcttc tgaatcaaag caagcctttg tcggagtatt
     7981 tctgggaaca cctttcagac ggcattaatc tcaatacgca ggaaggcaag gcggaattgg
     8041 tgaaaaccag ttcgccgctt ttggcgcaga ttaccgcgcc ggcattggct tatttgttaa
     8101 aacaacggct tagcgaactg gtcggcatcg accccgacaa cctcgcgcaa ctgctgggac
     8161 aggaagcgcc gaagcggcac gtcaaacaaa aaaactacaa actgcccccg atttccgtca
     8221 aacagcccgt tatgccgaca ttggtgcaac ggcaaatccg cagcctcttg ataaatccgg
     8281 attgggctgc atatatagac ctgcccgatt atctggcgtt ggacggcgat ttcgcctgcc
     8341 ttgccaacct cgccgaaacc attaaaaacc atccttccgt gccggcaacc gcacaggttt
     8401 tggaacatat gcgcggttcg ccctacgaag aaacaatcaa ccgcatcttc cggtcggccc
     8461 ttcaatcgga agaaatggaa ggcggcggcg aagaagattg cgaaaacttc caaatcggca
     8521 tcaaaaaact gctcaataag ttaaaataca gccaaatcga aacattaaaa caaaaaagcc
     8581 tgcaatccgg cttaaatgaa agcgagaaaa aacttttgct gtcgctgctg accgcaaaac
     8641 aaaattgacc ggcggattcc gccatccgta aaccgttatg ccgtctgaaa agcattcacc
     8701 ccggctgcaa caacgacacc tgcagaacac ccatccccaa aagccttcag acggcatcag
     8761 agtaccctac tctgccacgc cttcaggtgc gtccaaacgc aaaccgtcgg catcttgcca
     8821 acagaaagca gacaatgtcc aaaaaccaaa atcacgaaga ataccaagac gatgcccgcc
     8881 ccctgacgat tgaggaacaa cgcgcgcgcc tgcgtcagct catcatcatg ggtaaagaac
     8941 gcggctacat cacctactcc gaaatcaacg acgccctgcc agacgatatg tctgatgccg
     9001 accaaataga caatatcgtc agcatgattt ccggtttggg tatccaagtt accgaacacg
     9061 cccccgatgc ggaagacata ttgttaagcg acaatgccgc cgttaccgac gatgatgccg
     9121 tcgaagaagc cgaggccgcc ctttccagcg ccgactccga gttcggcagg acgaccgacc
     9181 ccgtccgtat gtatatgcgc gaaatgggac aggtcgacct gctgacccgc gaagacgaaa
     9241 tcatcatcgc caaaaaaatc gaaaacgccc tgaaaaatat ggttcaggcc atctccgcct
     9301 gcccgggatc cattgcggaa atcttagaac tcatcgaaaa aatccgcaaa gacgaaatcc
     9361 gcgtcgacga agtcgtagaa gccattatcg acccgaatga agtattgctc aacgaattgg
     9421 gcttggggca cttggaaacc acagcacccg agaaaccttc caacgacaat tcggacgaaa
     9481 acgaagacga cgaagaatcg gaagaagatg cggatgaaat ctcggcagcc aatctcgccg
     9541 aattgaaaca aaaagtcatc ggccactttg cccaaatcga aaaagactac aaaaaaatga
     9601 tcggccgttt ggaaaaacac cacagccggc acaaagacta tctcgcctac cgcgacgcga
     9661 ttgccaacaa actgctggaa gtccgtttcg ccacccggca aatcgacagc ctcagcagca
     9721 gcctgcgcag aaaagtagaa aacatccgca aactcgaacg cgaaatccgc gacatctgcc
     9781 tcgaccgcgt ccatatggag cgcgactact tcatccaaaa cttcctgccc gaaatcacca
     9841 atctggaatg gattgaagaa gaaatcgcca aaggcagggt ttggagcgac gcgctcgacc
     9901 gcttccgcca cgccatcctc gaaaaacaaa ccgagttggc ggatatggaa aaagaaaccc
     9961 gcatttccat cgaagagttg aaagaaatca acaaaaatat ggtgtcgagc gaaaaagaaa
    10021 ccgcagccgc caaacaggaa atgattcagg caaacttgcg cctcgtgatt tccatcgcca
    10081 aaaaatatac caaccggggc ttacaattcc ttgatctgat tcaggaaggc aacatcggtt
    10141 tgatgaaagc ggtcgataag ttcgaatacc gcagaggcta taaattctcc acctacgcaa
    10201 cctggtggat ccgccaggca atcacccgct cgattgccga tcaagcgcgt accatccgca
    10261 ttccggtaca tatgattgaa accatcaaca agatgaaccg catctcgcgc caacaccttc
    10321 aagaaaccgg cgaagaaccc gattccgcca aacttgccga actgatgcag atgcccgaag
    10381 acaaaatccg caaaatcatg aaaatcgcca aagagccgat ttcgatggaa acccccatcg
    10441 gcgacgacga cgattcgcac ttgggcgact tcatcgaaga tgccaacaat gttgcgccgg
    10501 ccgatgcggc aatgtacacc agcctgcacg aagtaaccaa agaaatcctc gaaagcctga
    10561 caccgcgtga ggcaaaagtc ctgcgtatgc gtttcggcat cgatatgaac accgaccaca
    10621 cgctggaaga agtcggcaga cagtttgacg taacgcgcga acgcatccga caaatcgagg
    10681 caaaagcact ccgcaagctg cggcatccga caagaagcga ccgtttgaga agtttcttgg
    10741 acagcgaaga cagcaagctg taaaccaaaa aaccgcaggt ttcaaatacc tgcggttttt
    10801 tcttacacaa taaacaacgc ttccacatat cccacactcc tatcccgaga cctttgcaaa
    10861 atcccccaaa atcccctaaa ttcccaccaa gacatttagg ggattttcca tgagcacctt
    10921 ctttcagcaa accgcacaag ccatgattgc caaacacatc gaccgcttcc cactattgaa
    10981 gctagatcaa gtgattgatt ggcaaccgat cgaacaatac ctgaaccgtc aaagaatccg
    11041 ttacgtccga gaccaccgcg gccgtcccac ctacccgctg ttgtccatgt tcaaagccgt
    11101 c
//
LOCUS       DAWGNT010000052        11058 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.052, whole genome shotgun sequence.
ACCESSION   DAWGNT010000052 DAWGNT010000000
VERSION     DAWGNT010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 11058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11058
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.052"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(5..1006)
                     /locus_tag="WHR98_000976"
     CDS             complement(5..1006)
                     /locus_tag="WHR98_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEZ2307670.1"
                     /translation="MIDGQTTEPKQKTRIILAPMQGLVDDVMRDLLTRIGGYDECVSE
                     FVRITHTVHSQSIWLKYVPEIANGNKTFSGTPCTVQLLGSDADNMAANALEAVRFGAN
                     KIDLNFGCPAPTVNKHKGGAILLKEPELIFHIVKTLRGRLPAHIPLTAKMRLGYEDKS
                     RALECACAIAEGGACGLTVHARTKAEAYEPPAHWEWIRKIRDTVNIPVTANGDVFSLQ
                     DYIGIKTISGCNSVMLGRGAVIRPDLARQIKQYENGGPVKDTDFAEVSKWIRQFFELC
                     LTKEANNKYPLARLKQWLGMMKKEFAAAQNLFDRVRTVKDADEVRNILAEFEREMNT"
     gene            complement(1083..4916)
                     /locus_tag="WHR98_000977"
     CDS             complement(1083..4916)
                     /locus_tag="WHR98_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/FMN-binding oxidoreductase"
                     /protein_id="HEZ2307671.1"
                     /translation="MTTTTAPQRIREIPYNYTSYTDREIVIRLLGDEAWQILQDLRGQ
                     RKTGRSARMLFEVLGDIWVVVRNPYLVDDLLEHPKRRTALVREMRHRLNEIRKRRDDN
                     RQVDVLVAAADKAVGRFDGSFDETRQKRQQILARLSKITKPHNIMFDGLARVTHVTDA
                     TDWRVEYPFVVVNPDTEAEIAPLVRALIELDLVIIPRGGGTGYTGGAIPLDAMSAVIN
                     TEKLDKHNGVEFVELAGLDGKHPIIRCGAGVVTRRVEETAHQAGLVFAVDPTSADASC
                     VGGNVAMNAGGKKAVLWGTALDNLAYWNMVNPQGEWLRIERVRHNFGKIHDEETAVFD
                     VHTLDSDGLNIVKTERLEIPGHKFRKVGLGKDVTDKFLSGLPGVQKEGTDGIITGVAF
                     VLHKMPKYTRTVCMEFFGTVATATPSIVEIRDFLLAHESVQLAGLEHLDWRYVRAVGY
                     ATKAAGKGRPKMVLLADVVSDDEAAVQAAAEHICELARARDGEGFIAVSPEARKTFWL
                     DRSRTAAIAKHTNAFKINEDVVIPLERLGEYSDGIERINIELSIQNKLKLCAELEQYL
                     SGKLPIDKMGTDLPTAELLGERGKHALAHVSAVKARWEWLLANLDTPLADYKARYGAA
                     VHAAPEAKDNESCFTAFRDFRLRVSVKADVMKPLSEIFSGKTDTKIIEGLGKIHAKTV
                     RGRVFVALHMHAGDGNVHTNIPVNSDDAEMLQTAYRSVERIMKIARSLGGVISGEHGI
                     GITKLEFLSDEEMQPFWDYKNQVDPKHTFNRHKLMKGSDLRNAYTPSFELLGAESLIM
                     EKSDLGTIADSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILGVGLLTEAFLYEEQT
                     RRGVSIKHFEELMDIGDHCTVCHRCVKPCPVNIDFGDVTVAVRNYLADSGHKRFAPAA
                     SMGMAFLNATGPKTIKALRAAMIQTGFPAQNFAYKIGKLLPVGTKKQKAEPKATVGKA
                     PIKEQIIHFINRPLPKNVPAKTPRSLLGIEDGKSIPIIRNPASPEDAEAVFYFPGCGS
                     ERLFSQIGLAVQAMLWHVGVQTVLPPGYMCCGYPQDAGGNKAKAEEMSTNNRVAFHRM
                     ANTLNYLDIKTVVVSCGTCYDQLEKYRFEEIFPGCRIIDIHEYLLEKGVKLDGVKGQQ
                     YLYHDPCHTPIKTMNATQMASNLMGQKVVLSDRCCGESGMFAVKRPDIATQVKFRKQE
                     EIEKNLKELPQGEPVKMLTSCPACLQGLSRYTDDNNMPADYIVIEMAKHILGENWLDE
                     FVKKANNGGVEKVLL"
     gene            5179..5275
                     /gene="ffs"
                     /locus_tag="WHR98_000978"
     ncRNA           5179..5275
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="WHR98_000978"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            5443..7134
                     /gene="dld"
                     /locus_tag="WHR98_000979"
     CDS             5443..7134
                     /gene="dld"
                     /locus_tag="WHR98_000979"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HEZ2307672.1"
                     /translation="MSASQLLSRLTQTVGEKYIITDPAKTEQYRQGYRFGEGRALAVV
                     RPGTILEMWKILQACVEADVIVITQAANTGLTGGSTPDGNDYDRDIVIVNTMRMNIIQ
                     TINNNEQVVCLPGSTLNQLELLLKPLGREPHSVIGSSCIGASVLGGVCNNSGGALVQR
                     GPAYTEMALFAQINEEGRLELVNHLGIDLGDTPEEILTNLQGHHYQNKDIKQDAGKGH
                     DHAYCEHVRQVDEPTAARFNADPARHYEASGCAGKLMVFAVRLDTFPQEKQTAVFYIG
                     TNDINELTDIRRAALGEFESLPVSGEYIHRHAFDIADVYGKDTFYVIKKFGTHQLPKL
                     FDLKARVDRFGKKVSFLPKHFSDKAMQFVSKFLPDHLPKSMRDYRDKYEHHLILKMGG
                     KGVDEARAFLKEYFAHHGGAFFECNAEETQAAMLHRFAVASAAIRYRAVHDDEVEDLV
                     ALDIALRRDDRDWFEKLPSEIDNKIIHKLYYGHFMCHVFHQDYIIKKGNDCMALEHEM
                     LHLLDQRGAQYPAEHNVGHLYEAKPALKQFYRKLDPTNSFNPGVGKTSKKKNWAE"
     gene            7266..7373
                     /locus_tag="WHR98_000980"
                     /pseudo
     CDS             7266..7373
                     /locus_tag="WHR98_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            7429..7800
                     /locus_tag="WHR98_000981"
     CDS             7429..7800
                     /locus_tag="WHR98_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2628 domain-containing protein"
                     /protein_id="HEZ2307673.1"
                     /translation="MKPYKIYTHPALPPQAVKQGWSWPGLLFGTLWACFKRMWGLGLG
                     LTGAIFVLAVFAQLVYGDTPATDSAFNVLGLAVSVWFGAKGNSLYARHLLSRGYTELP
                     ETVEAANPQAALAQYFGRGGR"
     gene            7955..8503
                     /locus_tag="WHR98_000982"
     CDS             7955..8503
                     /locus_tag="WHR98_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEZ2307674.1"
                     /translation="MARLTVHTLETAPEAAKARVEAVLQNNGFIPNLIGVLANAPEAL
                     AFYQEVGKLNAANSLTAGEVEVIQIIAARTNQCGFCVAGHTKLATLKKLLSEQSVKAA
                     RALAAGEFDDAKLGALAAFTQAVMAKKGAVSDEELKAFFDAGYNQQQAVEVVMGVALA
                     TLCNYVNNLAQTEINPELQAYA"
     gene            8633..9724
                     /locus_tag="WHR98_000983"
     CDS             8633..9724
                     /locus_tag="WHR98_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HEZ2307675.1"
                     /translation="MNAQTLIANVAELVKTKLKPIVDDIDRKGYYPEAFMRELGAIGG
                     FGAVGTEAEGGNGLGLATQIAVLREIGKECGATSFSAWCQAACAWYLHQTPNQAVKDK
                     YLADILQGKVLAGTGMSNTVKHLAGIEKHNLQAERVEGGYTVNGALPWVSNIGEEHIW
                     ANTAQIGGGYVMFITGGQWEGVSLQNCPEFCALEGTRTFSLNFKDVFIPDEDIIAAPE
                     QFADYIQSIKAGFILLQIGIGAGVIDGSLGIIRLANIVNAEVNSYLDDGYDSLKARLD
                     GAWAETERLAGLAWSGTPDNLATLKLREAAAVLALAAAQSAALHSGAKGYLMRSPAQR
                     RVREAMFVAIVTPAIKHLRKEIAAIEAAK"
     gene            10195..10365
                     /locus_tag="WHR98_000984"
     CDS             10195..10365
                     /locus_tag="WHR98_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubredoxin"
                     /protein_id="HEZ2307676.1"
                     /translation="MAQYMCGPCGWIYDEEHGDPEHGIPPGTKFEDIPDDWKCPECGV
                     GKEDFYLLDFVI"
BASE COUNT         2593 a         3085 c         2950 g         2430 t
ORIGIN      
        1 atattcaagt attcatttct cgctcaaatt cagccaagat gttccgaact tcgtccgcat
       61 ccttaaccgt tcggacgcgg tcgaacagat tttgtgctgc tgcaaattct ttcttcatca
      121 tacccagcca ctgtttcagc cgcgccagcg gatatttgtt gtttgcctct tttgtcaggc
      181 acagctcgaa aaactgccgt atccatttgg aaacttcggc aaaatccgtg tctttgaccg
      241 gcccgccgtt ctcgtattgc ttgatttgcc gcgccaaatc ggggcggatg accgcgccgc
      301 gaccgagcat cacgctgttg cagccgctga ttgttttgat gccgatatag tcctgcaggc
      361 tgaaaacgtc gccgttggcg gtaacgggaa tattgacggt atctcggatt ttccttatcc
      421 attcccaatg cgccggcggt tcgtaagcct cggctttggt acgcgcgtgt acggtcagtc
      481 cgcatgcgcc cccttcggca atcgcacagg cgcattccaa agcccggctt ttatcttcat
      541 agccgagccg catttttgcg gtgagcggaa tatgtgcggg caaacgtccg cgcagcgttt
      601 tgacgatgtg gaatatcagt tccggctctt ttaaaaggat tgcgccgcct ttgtgtttgt
      661 tgacggtggg cgcggggcag ccgaagttca aatcgatttt gttcgcaccg aagcggacgg
      721 cttccagcgc attcgccgcc atattgtccg catcgctgcc caaaagttgg acggtgcagg
      781 gcgtgccgga aaacgttttg tttccgttgg cgatttcggg gacatatttt aaccatatgg
      841 attgggaatg cacggtatgg gtaatgcgta caaattcgct gacgcattcg tcgtagccgc
      901 caatacgcgt cagcaggtcg cgcatcacgt catcgaccag accctgcata ggggcaagga
      961 tgattcgggt tttttgtttg ggttcggttg tttgtccgtc aatcatgatt cgggtaggta
     1021 tttgattcaa acaatgccgt ctgaaggctt tcggcgttca gacggcattt ccgtgtccgt
     1081 tgttacagca atactttttc cacgccgccg ttgttggctt ttttcacaaa ctcgtctagc
     1141 cagttttcgc cgaggatgtg tttcgccatt tcgatgacga tgtagtcggc aggcatattg
     1201 ttgtcgtcgg tgtagcggct caagccttgc aggcaggcgg ggcaggaggt cagcattttg
     1261 acgggttcgc cctgcggcag ctctttgagg tttttctcga tttcttcctg tttgcggaat
     1321 ttgacttggg tggcgatgtc ggggcgtttg acggcaaaca taccggattc gccgcagcag
     1381 cggtcgctta aaacgacttt ctgccccatc aggttgcttg ccatttgggt ggcgttcatg
     1441 gttttgatgg gtgtgtggca ggggtcgtgg tagaggtatt gctgaccttt cacgccgtcg
     1501 agtttcacgc ctttttcaag caggtattcg tggatgtcga tgatgcggca gccggggaag
     1561 atttcctcaa atcggtattt ttcgagctgg tcgtaacaag tgccgcaact gacgacgacg
     1621 gttttgatgt cgaggtagtt gagggtgttt gccatacggt ggaaagccac gcggttgttg
     1681 gtgctcattt cttcggcttt tgccttattg ccgcccgcgt cctgcggata gccgcaacac
     1741 atatagccgg gcggcaggac ggtttgcacg ccgacgtgcc agagcatggc ttggacggcg
     1801 agtccgattt ggctgaacag gcgttccgaa ccacagccgg gaaagtaaaa cacggcttcg
     1861 gcatcttccg gagaagccgg attgcggatg atggggatgc ttttgccgtc ttcgatgccc
     1921 aataaggagc gcggtgtttt ggcaggcacg tttttgggca gcggacggtt gatgaagtgg
     1981 ataatttgtt ctttaatcgg ggctttgccg acggttgcct tgggttcggc tttttgcttt
     2041 ttcgtgccga cgggcagcag tttgccgatt ttgtaggcga aattctgcgc ggggaagccg
     2101 gtttgtatca tcgcggcacg tagggcttta atggttttcg ggccggtcgc gtttaggaat
     2161 gccataccca ttgaagctgc cggcgcaaag cgtttgtggc cggaatcggc aaggtagttg
     2221 cggacggcta cggtaacgtc gccgaagtcg atgttgacgg ggcaaggctt gacgcagcgg
     2281 tggcacacgg tgcagtggtc gccgatgtcc atgagttctt caaagtgttt gatggaaacg
     2341 ccgcgacggg tttgttcttc gtataaaaag gcttcggtca agagccccac gccgaggatt
     2401 ttgttgcgcg ggctgtacag caggttggca cgcggaacgt gggtggagca gacgggtttg
     2461 catttgccgc agcgcaggca gtctttgaca gaatcggcaa tcgtgccgag gtctgatttt
     2521 tccataatca gcgattccgc gcccaaaagc tcgaaagacg gcgtgtaggc gttgcgtaag
     2581 tccgagcctt tcatcagttt gtggcggttg aaggtgtgtt tgggatcgac ttggtttttg
     2641 tagtcccaaa acggctgcat ttcttcatcg cttaaaaatt cgagcttggt gatgccgatg
     2701 ccgtgttcgc cggaaattac gccgccgagc gaacgggcga ttttcataat gcgttccaca
     2761 gaacggtatg ccgtctgaag catttcggca tcgtctgaat tgacggggat attggtgtgg
     2821 acattgccgt cgccggcgtg catatgcagg gcgacaaaga ctctgccgcg cacggttttg
     2881 gcgtggattt tgcccaagcc ttcgatgatt ttggtgtcgg ttttgccgct gaagatttca
     2941 gaaagcggct tcattacgtc tgctttgaca gacacgcgca ggcggaaatc gcggaatgcg
     3001 gtaaagcagc tttcattgtc tttggcttcg ggcgcggcgt ggacggctgc accgtagcgg
     3061 gctttgtagt cggcaagcgg cgtgtccaaa ttggcaagca gccattccca acgcgctttg
     3121 acggcggaaa cgtgggccag ggcgtgtttg ccgcgttcgc ccaacagttc ggcggtcggc
     3181 aggtccgtac ccattttgtc gatggggagt ttgcccgaaa gatattgctc taattcagca
     3241 cagagtttga gtttgttttg aatggaaagc tcgatgttga tgcgctcgat accgtctgaa
     3301 tactcgccca gccgctccag cggaatcacc acgtcttcgt tgattttaaa ggcgttggtg
     3361 tgtttggcga tggcggcggt gcggctgcgg tcgagccaga aggttttgcg cgcttcgggc
     3421 gacacggcga taaagccttc gccgtcgcgg gcgcgggcga gttcgcagat gtgttcggcg
     3481 gctgcctgca cggcggcttc gtcgtctgaa accacatccg ccagcaagac cattttcgga
     3541 cgtcctttac ccgctgcttt ggtggcgtag ccgacggcgc ggacataacg ccagtccaaa
     3601 tgctccaaac cggccagttg tacactttca tgggcaagca agaagtcgcg gatttcgaca
     3661 atggacggcg tagcggtggc gaccgtgccg aaaaactcca tacacacggt gcgcgtgtat
     3721 ttcggcattt tatgcaacac aaaggctacg ccggtgatga tgccgtccgt gccttctttc
     3781 tgcacgccgg gcagaccgct caagaatttg tcggtaacgt ctttgcccaa accgactttg
     3841 cggaatttgt ggccggggat ttccaagcgt tcggttttaa cgatattgag gccgtctgaa
     3901 tccagcgtgt gaacgtcgaa cacggcggtt tcttcgtcgt ggattttgcc gaaattatgg
     3961 cgcacgcgct cgatgcgcag ccattcgcct tgagggttaa ccatgttcca gtaggcgagg
     4021 ttgtccaacg ccgtccccca cagcacggct tttttgccgc ccgcgttcat cgccacattg
     4081 ccgcccacac aggacgcatc ggcggaagtc ggatcgacgg cgaacaccaa acccgcctga
     4141 tgcgcggttt cttccacccg ccgcgtaacc acgcccgcgc cgcaccggat aatcggatgt
     4201 ttgccgtcca agcccgccag ttcgacaaat tccacgccat tatgtttatc cagcttttcc
     4261 gtattgatga ccgcgctcat cgcgtccaaa ggaatcgcgc cgccggtata acccgtgccg
     4321 ccgccgcgcg gaataatgac caaatccagc tcgattaagg cgcgcaccaa aggcgcgatt
     4381 tccgcctccg tgtcgggatt gacgaccaca aacggatact ccacgcgcca gtcggtcgca
     4441 tcggtaacgt gcgttacccg cgccagcccg tcgaacataa tattgtgcgg cttggtgatt
     4501 ttgctcaaac gcgccaaaat ctgctgccgc ttttggcgcg tttcgtcaaa gctgccgtca
     4561 aaacgcccga ccgctttgtc cgccgccgca accaagacat ccacttgccg attgtcgtcg
     4621 cggcgtttgc ggatttcgtt caaacggtgg cgcatttccc gcaccagcgc ggtgcggcgt
     4681 ttcgggtgct ccaacaagtc atcgaccaga tatggattgc gcacaactac ccaaatatcg
     4741 cccaacactt caaacagcat ccgcgccgaa cgtccggttt tacgctgtcc gcgcaagtct
     4801 tgcagaatct gccacgcctc gtcgcccaat aatcggatga cgatttcgcg gtcggtgtag
     4861 gaagtatagt tgtaggggat ttcccgaata cgctgcgggg cggtagtcgt ggtcatggtg
     4921 tgtccgtgtt tggcagtttt tatttgaatg ccgtctgaaa agtcggtttc aggcgggttt
     4981 gaaaaggcga taatgtagtt caatttttaa tatttttcaa tgtcggaatg ggaaataccc
     5041 ttatagaaac aaaatgacgc tttgaaaaat tgttgacaat attatcggat gataaatttc
     5101 agatgccgtt tccggcgtat gactgcatca aaacggttga gtttttccca aaaaccgcta
     5161 taatgtgcgg cttcttgagg cgggtctccc cgcatggcaa atcggaacac cgggtcaggg
     5221 gcggaagcca gcagcccact ccgatgcgcc agtgccgggg gtttggcccg ccgccctatt
     5281 tgaaacgccg gagcttcgat gttccggcgt tcccgtatcg caccgatgcc gtctgaaagc
     5341 cgttcagacg gcatttcctt tactttgcca taacgcataa ctacaatggg aaaacaattt
     5401 caatgtgcat atgcacctgc cgacaatttt aaggaaactg ccatgagcgc atcacaatta
     5461 ctgtcaagac tgacccaaac cgtaggcgaa aaatacatca tcaccgaccc cgcgaagacc
     5521 gaacaatacc gccaaggcta ccgcttcggc gagggcaggg cgttggcggt ggtgcgcccc
     5581 ggaaccattc tggaaatgtg gaaaattctg caggcctgcg tcgaagcgga cgtgattgtg
     5641 attacgcagg cggcgaatac cggtttgacg ggcggctcga cccccgacgg caacgattac
     5701 gaccgcgaca tcgtgattgt gaacaccatg cggatgaaca tcatccaaac catcaacaac
     5761 aacgaacaag tcgtctgcct gcccggctcg accctgaacc agcttgaatt gctgctgaaa
     5821 cctttggggc gcgaaccgca ttcggttatc ggctcttcct gcatcggtgc gtccgtcttg
     5881 ggcggcgtgt gcaacaactc cggcggcgca ttggtgcagc gcggcccggc ctacaccgaa
     5941 atggcactgt tcgcccaaat caacgaagaa ggcaggttgg aactggtcaa ccacttgggc
     6001 atagacttgg gcgacacgcc cgaagaaatc ctgaccaacc tgcaaggtca tcattatcaa
     6061 aacaaagaca tcaaacaaga cgcgggcaaa gggcacgacc acgcctattg cgaacacgtc
     6121 cgccaagtgg acgaaccgac cgccgcgcgt ttcaatgccg accccgcccg ccattacgaa
     6181 gcctcgggct gcgcgggcaa actgatggtt tttgccgtcc gtttggacac cttcccgcaa
     6241 gaaaaacaaa ctgccgtgtt ctacatcggc acgaatgaca tcaacgaact gaccgacatc
     6301 cgccgcgccg ccttgggcga atttgaaagc ctgcccgttt ccggcgaata catccaccgc
     6361 cacgctttcg atattgccga cgtgtacggc aaagatacgt tttacgtcat caaaaaattc
     6421 ggtacgcacc aactgccgaa attatttgac ttgaaggcgc gcgtggacag gttcggcaaa
     6481 aaagtcagct tcctgcccaa acatttttcc gacaaggcaa tgcagttcgt cagcaaattc
     6541 ctgcccgacc acctgcccaa atccatgcgc gattaccgcg acaaatacga acaccatctg
     6601 attctgaaaa tgggtgggaa aggcgtggat gaggcgcgcg cgttcttaaa agaatatttt
     6661 gcacaccacg gcggcgcgtt tttcgagtgc aacgccgaag aaacccaagc cgcgatgctg
     6721 caccgtttcg ccgtcgcttc cgccgccatc cgctaccgcg ccgtgcatga tgacgaagtg
     6781 gaagacttgg tcgcgctcga catcgccctg cgccgcgacg atcgcgactg gtttgaaaaa
     6841 ctgccgtcgg aaatcgacaa taaaatcatc cataaactct actatggaca tttcatgtgc
     6901 cacgttttcc atcaggatta catcatcaaa aaaggcaacg actgcatggc gttggaacac
     6961 gaaatgctgc atcttttaga ccaacgcggc gcgcaatatc ccgccgaaca caacgtcggt
     7021 catttgtatg aagccaaacc cgcgctcaaa cagttttacc gcaaacttga cccgaccaac
     7081 agcttcaacc cgggcgtagg caaaaccagc aaaaagaaaa actgggcgga ataagcgcgt
     7141 ccgctttgaa ggcaggcaat gccgtctgaa ggcaaaacgc cgttcagacg gcattgtcgg
     7201 gtttgaagtt ccccatcggg taatcgcttt caagccgtat gccggcacag gcgcgcgcgc
     7261 ctcccaaata tagtggatta aatttaaatc aggacaaggc aacgaagccg cagacagtac
     7321 agatagtacg gcaaggcgag gtaacgccgt actggtttaa atttaatcca ctataaagtc
     7381 tgatcctacc ttcccaaagg gcagggtttc aaccgaaaag gaaacacgat gaaaccatac
     7441 aaaatctaca cccatcccgc cctgccgccc caagccgtca aacaaggctg gtcgtggccg
     7501 ggccttttgt tcggcacgct gtgggcgtgt ttcaaaagaa tgtggggttt ggggctgggg
     7561 ctgacgggcg cgatattcgt gctggcggtg tttgcccaac tggtttacgg cgacacgccc
     7621 gccacagact cggcgtttaa cgtattgggc ttggcggttt ccgtctggtt cggcgcaaag
     7681 ggcaacagcc tttatgcacg ccacctttta tcgcgcggct ataccgaatt gcccgaaacg
     7741 gttgaggcag ccaatcccca agccgcattg gcgcaatatt tcgggcgcgg gggccgataa
     7801 gcgcgttttc ttttccatca tgccgtctga aaaatgttca gacggcattt cttataacct
     7861 tttgtttgca gcacataacc aatcagtctt tcctattccg ttccgaaatg cataccatgc
     7921 gcccgtaccc aatatttgcg aacaaggaaa gaaaatggca cgtttaaccg tacacaccct
     7981 cgaaaccgcc cccgaagccg ccaaagcgcg cgtcgaggcg gtacttcaaa acaacggctt
     8041 tatccccaat cttatcggcg tattggcaaa cgcccccgaa gccttggcgt tttaccaaga
     8101 agtcggcaag ctcaacgccg ccaacagcct gaccgccggc gaagtcgaag tcatccagat
     8161 catcgccgcc cgtaccaacc aatgcggttt ttgcgtggca gggcacacca aactcgcaac
     8221 cctgaaaaaa ctcctttccg aacaatccgt caaagccgcg cgcgctttgg cggcaggcga
     8281 atttgacgat gctaaactcg gcgcgctcgc cgcctttacc caagccgtaa tggcaaaaaa
     8341 aggcgcggta tccgacgagg aactcaaagc attttttgat gcgggctaca accagcagca
     8401 ggcagtcgaa gtcgtgatgg gcgtagcctt ggcaactttg tgcaactacg tcaacaacct
     8461 cgcccaaacc gaaatcaacc ccgaattgca ggcttacgcc tgatacggca aaccgcccga
     8521 atatcgggcg gtttttcaac ccccctcaaa caaaaacaag ccgccaaacg gcagggaagc
     8581 agccgcgcat caggcgtgcg cccgatttcc ccgcaaacct taaggaacaa agatgaacgc
     8641 ccaaaccctg attgccaacg ttgccgaact cgtcaaaacc aagctcaaac ccatagtgga
     8701 cgacatcgac cgcaaaggat actaccccga agcatttatg cgcgaactcg gcgcaatcgg
     8761 cggattcggc gcagtcggca cagaagccga aggcggcaac ggcttgggtt tggcaacgca
     8821 aatcgccgta ttgcgcgaaa tcggcaaaga atgcggcgca acctccttca gcgcgtggtg
     8881 tcaggcggct tgcgcgtggt atctgcatca aacgcccaac caagccgtca aagacaaata
     8941 cctcgccgac atcctgcaag gcaaagtatt ggcaggcacc ggaatgtcca ataccgtcaa
     9001 acaccttgcc ggcattgaaa aacacaacct tcaagccgag cgcgtggagg gcggttatac
     9061 agtcaacggc gcgctgccgt gggtatccaa catcggcgaa gagcatattt gggcaaatac
     9121 cgcccaaatc ggcggcggct acgtcatgtt tatcaccggc ggacaatggg aaggcgtaag
     9181 cctgcaaaac tgccccgaat tttgcgccct cgaaggcacg cgcaccttca gcctgaactt
     9241 caaagacgta tttatccccg acgaagacat catcgccgcg cccgaacagt ttgccgacta
     9301 catccaaagc atcaaagcag gctttatcct cctgcaaatc ggcatcggcg cgggcgtgat
     9361 agacggcagc ctcggcatca tccgcctcgc caacatcgtc aacgccgaag tcaacagcta
     9421 tctcgacgac ggctacgaca gcctcaaagc aaggctggac ggcgcgtggg cagaaaccga
     9481 acggctcgcc ggattggctt ggagcggcac gcccgacaac cttgctaccc tcaagttgcg
     9541 cgaagccgcc gccgtactgg cacttgccgc cgcccaatcc gccgccctgc attccggcgc
     9601 aaaaggctac ctgatgcgca gtcccgccca aaggcgcgtc cgcgaagcaa tgtttgtcgc
     9661 catcgtaacc cccgcgatca aacacctccg aaaagaaata gcggcaatcg aagccgcaaa
     9721 ataaacaggc ggaaaaaacc gaaaccccca ccgcgtcatt cccgcgaaag cgggaatcca
     9781 gcccccaacg caacaggaat ccatcggaaa aaacagaaac ccccaaaccg tcattcccgc
     9841 aaaagcggga atccagcccc ctaacgcaac aggaatccat cgaaaaaacc gaaacctcca
     9901 aaccgtcatt cccacggaag tgggaatcca gtaaccgaaa aaccacagga atctatcgaa
     9961 aaaaacccca ccccccaaaa aaaccgggcg gatacctcac catcctccca aaccctgatt
    10021 tatagcggat gaacaaaaat cagggcaagg cggcgaaacc gcagacagta caaatagtac
    10081 gaaaccgatt cacttggtgc ttgagcacct tagagaatcg ttctctttga gctaaggcga
    10141 ggcaacgccg taccggtttt tgttcatccg ctatacaaaa acaaggaaac acaaatggcg
    10201 caatatatgt gcggcccctg cggctggatt tacgatgaag aacacggcga ccctgaacac
    10261 ggcatccccc ccgggacaaa gtttgaagac attcccgacg actggaaatg ccccgaatgc
    10321 ggcgtgggca aagaagattt ctacctgttg gatttcgtga tatagcggca gccgaacccc
    10381 ttcggaaaat tcctcggcgt tccgcctgcg gtagcaggga acaccgtttt atagtggatt
    10441 aacaaaaatc aggacaaggc gacgaagccg cagacagtac aaatagtacg gaaccgattc
    10501 acttgttaaa gaatcgttct ctttgagcta aggcgaggca acgccgtact ggtttttgtt
    10561 aatccactat atccgtttgc gcccgccaag ccgtgttgca cagatgcgac acggcttttt
    10621 tctttctgtt gtcagaatgt aaattttcgt caaaaaacat caaaaatcat cccccccccc
    10681 gaatttgcgt aaaataaagt gtaatccctt tgatcataag ggaatgttga caattagatc
    10741 gattctccta ggctgacttt cgcaataaat ggggttgtca ataattgtgt atggtcgttt
    10801 gccgtccggc ggccgtcatt cccgcgcagg cgggaatcca gaaacgcaac gcagcaggac
    10861 tttatcggaa aaaaccgaaa tcccaccgcc gtcattcccg cgcaggcggg aatccagcaa
    10921 cacaacgcag caggacttta tcggaaaaaa ccgaaacccc accgaccgtc attcccgcaa
    10981 aagcgggaat ccagcaaccg aaaaaccaca ggaatctatc agcaaaaaca gaaaccccac
    11041 cgccgtcatt cccgcgaa
//
LOCUS       DAWGNT010000053        10822 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.053, whole genome shotgun sequence.
ACCESSION   DAWGNT010000053 DAWGNT010000000
VERSION     DAWGNT010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10822
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.053"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(158..1267)
                     /gene="mltB"
                     /locus_tag="WHR98_000985"
     CDS             complement(158..1267)
                     /gene="mltB"
                     /locus_tag="WHR98_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HEZ2307677.1"
                     /translation="MKKRKILPLAICLAALSACTAMEARPPRANEAQAPRADEMKKES
                     RPAFDAAAVFDAAAVPVSDSGFAANANVRRFVDDEVGKGDFSRAEWQDFFDKAAYKAD
                     IVKIMHRPSTSRPWYVFRTGNSGKAKFRGARRFYAENRALIDDVAQKYGVPAELIVAV
                     IGIETNYGKNTGSFRVADALATLGFDYPRRAGFFQKELVELLKLAKEEGGDVFAFKGS
                     YAGAMGMPQFMPSSYRKWAVDYDGDGHRDIWGNIGDVAASVANYMKQHGWRTGGKILV
                     SATLAPGADVQAIIGEKTALTRTVADLKAYGIIPGEELADDEKAVLFKLETAPGVFEY
                     YLGLNNFYTVWQYNHSRMYVTAVRDIANSLGGPGL"
     gene            complement(1176..1427)
                     /locus_tag="WHR98_000986"
     CDS             complement(1176..1427)
                     /locus_tag="WHR98_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307678.1"
                     /translation="MPLDGIFGGGRQISGGAKGNARHSAKPPIAADTAFRAAPLRRFP
                     TYPICSEHIYEKEKNTAAGNLFGGFVCLYGDGGTPAPGK"
     gene            complement(1468..2895)
                     /locus_tag="WHR98_000987"
     CDS             complement(1468..2895)
                     /locus_tag="WHR98_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HEZ2307679.1"
                     /translation="MIHTEPSAQPSTMDTAAFLKHIESAFRRIFSDGIDLMRYLPEDK
                     WLALKQAGLLLPFLDKKHGGRKGSQFEIQEVLRIAGHYGVPVTLRTGIEGALVLQPLQ
                     EFGDEAQIAQGLDMVFKGEGGGLGVTEPETSGAAIAREMQSYYEYTDGQTIYVNAAKY
                     WQGNSQSDFLLVAAKERKNGKLAKVIDLLLVPKTYIRCETLASEGLRAVRYAVNRIDA
                     EMPATAVMKLSQSDAAGLRAFQNIFIRSRLQLIGMTHGIMEYILENLERYVRNDIRFV
                     DYERREIRRRHQVSEILYRYVCHSVSPVAPVAHQLMEANIVKTLATEYTYAAAQMLQK
                     LLGAKGFERGHTAGNIAIDIRPFTIFEGPNDMLYAEIYDQFVRATAEEKEAGMKLDKN
                     QTLLDRLQTDARFAAVARDYTLPEDIRSFLQEHTLTDACALQKVFIGKIIARLFVFVQ
                     AEHEDAAACLLNDIRKDILDCRYCG"
     gene            3080..7000
                     /gene="mfd"
                     /locus_tag="WHR98_000988"
     CDS             3080..7000
                     /gene="mfd"
                     /locus_tag="WHR98_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEZ2307680.1"
                     /translation="MTYPIPKPREKSRWSNLSQGSLPLALARYLPHKRLKVVLTQDAE
                     QALRLQTAWRFFRPHDTAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLF
                     VPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVR
                     GGIVDLFPMGSEMPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEA
                     QKIFRSRFREEVDGNPNDAAVYKAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDAL
                     FVSLGDVHAEANRFWSDVKSRYAMAQGDETYPPLLPQHLYLSADVFAGRLKNYGQVLP
                     DVSGKEHTLPDLAVNRQSDEPLQALKDFQTTFDGRILLCAESLGRRETMLGFLQQNGL
                     KAKPVSDWQGFLSAHEPLMITVAPLAYGFKLGGLQSPNQQQTTSASEGEGDAVTDQTE
                     FSAAATNPLPSPLPQEREQSAAAVSDSLKAAAVSTESSLPLGTSNLHGQIRQQPAPSP
                     VGEGWGEGKAVAAQTEFSAAATNPLPSPLPQEREQSAAVVSDSLKAAAVSTESSLPPG
                     KSNLHGQIQQQPAPSPVGEGWGEGKAVAAQSAIAVITESDLYQYVARSRVHNRRKKHA
                     AVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAGEAQLYVP
                     VSQLHLISRYSGQAHENVALHKLGSGAWNKAKRKAAEKARDTAAELLNLYAQRAAQSG
                     HNFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVA
                     LRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNNSKATKAAL
                     EGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTM
                     TATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLRELKRGGQV
                     FFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTI
                     IETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRL
                     DAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQVGFTLYTEMLKQAVRDLKK
                     GRQPDLDAPLGITTEIKLHSPALLPESYCPDIHERLVLYKRLAVCETVQQINAIHEEL
                     VDRFGLPEQPVKTLIESHHLRLMAKELGIDAIDAAGEAVTVTFGKNNNVDPTEIILLI
                     QNDKKYRLAGADKLRFTAEMENIEVRINTVKNVLKTLQNRCLPK"
     gene            7149..7532
                     /locus_tag="WHR98_000989"
     CDS             7149..7532
                     /locus_tag="WHR98_000989"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEZ2307681.1"
                     /translation="MFRTMLGGKIHRATVTEADLNYVGSITVDQDLLDAAGIYPNEKV
                     AIVNNNNGERFETYTISGKRGSGVVCLNGAAARLVQKGDIVIIMSYVQLSEPEIAAHE
                     PKVVLVDGNNKIRDIISYEPPHTVL"
     gene            7554..8396
                     /gene="kdsA"
                     /locus_tag="WHR98_000990"
     CDS             7554..8396
                     /gene="kdsA"
                     /locus_tag="WHR98_000990"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEZ2307682.1"
                     /translation="MDIKINGITVGNDAPFVLFGGINVLEDLDSTLQTCAHYVEVTRK
                     LGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPV
                     AEVCDVIQLPAFLARQTDLVAAMAETGNVINIKKPQFLSPSQMKNIVEKFREAGNGKL
                     ILCERGSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQA
                     LDLALAGMATRLAGLFLESHPDPKLAKCDGPSALPLHLLEDFLIRIKALDDLIKSQPI
                     LTIE"
     gene            8411..8851
                     /locus_tag="WHR98_000991"
     CDS             8411..8851
                     /locus_tag="WHR98_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEZ2307683.1"
                     /translation="MMQTFRKISLYAATLWLGMQIMAGYIVAPVLFKMLPKMQAGEIA
                     SVLFNILSWSGLAVWGAVLAAAFAALTRRQTALLLFLLSALAANRFLITPVIEALKYG
                     HENWLLSFVGGSFGMWHGISSIVFMATALLSAVLSWRLSSKEAV"
     gene            8898..10184
                     /gene="eno"
                     /locus_tag="WHR98_000992"
     CDS             8898..10184
                     /gene="eno"
                     /locus_tag="WHR98_000992"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEZ2307684.1"
                     /translation="MSAIVDIFAREILDSRGNPTVECDVLLESGVMGRAAVPSGASTG
                     QKEALELRDGDKSRYSGKGVLKAVEHVNNQIAQALIGIDASEQSYIDQIMIELDGTEN
                     KGNLGANATLAVSMAVARAAAEDAGLPLYRYLGGAGPMSLPVPMMNVINGGEHANNSL
                     NIQEFMIMPVGAKSFREALRCGAEIFHALKKLCDSKGFPTTVGDEGGFAPNLNSHKEA
                     LQLMVEATEAAGYKAGEDVLFALDCASSEFYKDGKYHLEAEGRSYTNAEFAEYLESLV
                     NEFPIISIEDGMDENDWEGWKLLTEKLGGKVQLVGDDLFVTNPKILAEGIEKGVANAL
                     LVKVNQIGTLSETLKAVDLAKRNRYASVMSHRSGETEDSTIADLAVATNCMQIKTGSL
                     SRSDRMAKYNQLLRIEEELAEAADYPGKAAFYQLGK"
     gene            10198..10476
                     /gene="ftsB"
                     /locus_tag="WHR98_000993"
     CDS             10198..10476
                     /gene="ftsB"
                     /locus_tag="WHR98_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HEZ2307685.1"
                     /translation="MKWVTVVLSFALVCCQYSLWFGKGSIGRNSSLREQIAVQEEKNQ
                     TLALRNHSLAAEVYDLENGQEAISEIARVELGYIQDGETFYRLIRHNR"
     gene            complement(10517..10807)
                     /locus_tag="WHR98_000994"
     CDS             complement(10517..10807)
                     /locus_tag="WHR98_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S ferredoxin-like protein"
                     /protein_id="HEZ2307686.1"
                     /translation="MARIGTNKGFFELLEGETLLEGLERTGHMVEYQCRSGYCGSCRV
                     KILEGSVTYREPPLAFLGRDEILPCCCCVEGDVRLDCGLSGEDEGLSDSLLK"
BASE COUNT         2588 a         3196 c         2771 g         2267 t
ORIGIN      
        1 tgcaaaaatg ccgtccgaac cgaaacgtgg ttcagacggc attttatagt ggattaacaa
       61 aaatcaggac aaggcgacga agccgcagac agtacaaata gtacggcaag gcaaggcaac
      121 gccgtactgg tttaaattta atccactata aaaaacatta caatcccggg ccgccaagcg
      181 aattggcaat gtccctgacc gccgttacat acatccgact gtgattgtac tgccataccg
      241 tataaaaatt gttcaagccc aaataatatt caaacacgcc gggtgcggtt tccagtttga
      301 acaaaaccgc cttttcatca tctgcaagct cttcgccggg gatgatgccg tacgccttta
      361 aatccgccac cgtccgcgtc agggcggttt tttcgccaat gattgcctga acatccgcac
      421 ccggcgccaa tgttgcagac accagtattt tcccgcccgt gcgccaaccg tgctgcttca
      481 tataattggc aaccgatgcc gcgacatcgc cgatgttgcc ccatatgtcc cgatgtccgt
      541 ccccgtcata atccaccgcc catttccggt agctcgaagg cataaattgc ggcatcccca
      601 ttgcgcccgc atagctgcct ttaaaggcga aaacatcgcc gccttcttct tttgccagct
      661 ttaaaagctc gaccaattct ttttggaaaa acccggcgcg gcgggggtaa tcaaagccta
      721 aggtcgccaa tgcgtccgcc acacggaaac tgcccgtatt tttgccgtaa ttcgtttcaa
      781 tcccgataac cgccacgata agttcggcag gcacgccgta tttttgcgcc acatcatcga
      841 taagcgcgcg gttttccgca taaaaccggc gcgcgccgcg aaatttcgcc ttgcccgaat
      901 ttcccgtgcg gaacacatac cacggacgcg atgtggaggg gcggtgcata atcttgacga
      961 tgtccgcctt gtaagccgct ttgtcaaaaa aatcctgcca ttccgcccgg gaaaaatccc
     1021 ctttcccgac ttcatcgtcc acaaaacggc ggacatttgc attggcggca aacccgctgt
     1081 cggataccgg tacggctgcc gcgtcaaata cggctgccgc gtcaaacgcg gggcggcttt
     1141 cttttttcat ttcatccgcg cggggggctt gggcttcatt tgcccggggc gggcgtgcct
     1201 ccatcgccgt acaggcagac aaagccgcca aacaaattgc cagcggcagt atttttctct
     1261 ttttcataaa tatgttccga acaaataggg taagtgggaa agcggcgcaa gggcgcggcg
     1321 cgaaatgcgg tatccgccgc aatcggcggc tttgcagaat gccgcgcgtt gccttttgcg
     1381 ccgcccgaaa tctgcctgcc gccgccgaaa atgccgtcta aaggcacttc ccctttcaga
     1441 cggcattgcc tgcgccgtat ttgcccgcta tccgcaatat cggcagtcca atatgtcttt
     1501 gcggatatcg ttcagcaggc aggctgccgc gtcttcgtgt tccgcctgta cgaagacaaa
     1561 gagtcgggcg atgattttgc cgataaagac tttttgcagg gcgcaggcgt cggtcagcgt
     1621 gtgttcctgc aggaagctgc ggatgtcttc gggtaaggtg taatcacggg caacggcggc
     1681 aaagcgggca tcggtttgca ggcggtcgag cagggtttgg tttttgtcca acttcatgcc
     1741 tgcttctttt tcttcggcgg tggcgcggac aaactggtcg taaatttcgg cataaagcat
     1801 atcgttcggg ccttcaaaaa tcgtgaaggg gcggatgtcg atagcgatat tgccggcggt
     1861 gtgtccgcgt tcaaaaccct tcgcgcccaa gagtttttgc aacatttgcg cggcggcgta
     1921 agtgtattcc gtggcgaggg ttttgacgat gttcgcctcc atcagctgat gggcgacggg
     1981 ggcaacaggc gaaacggaat ggcagacgta gcggtaaaga atctcggaaa cctgatggcg
     2041 gcgccggatt tcgcggcgtt cgtaatcgac gaatctgatg tcgttgcgga cgtatcgttc
     2101 caggttttca aggatgtatt ccataatgcc gtgcgtcatg ccgatcagtt gcaggcggct
     2161 gcggataaag atgttttgga acgcgcgcaa accggcagcg tcgctctggg agagtttcat
     2221 cacggcggtt gcaggcattt cggcatcgat gcggttgacg gcgtaacgga cggcgcgcaa
     2281 gccttcggat gcgagggttt cgcagcggat gtatgttttg gggacgagca gcaggtcgat
     2341 gactttggcg agtttgccgt ttttgcgttc tttggcggca acgaggagga agtcgctttg
     2401 cgagttgccc tgccagtatt ttgcggcgtt gacgtaaatg gtttgtccgt cggtatattc
     2461 gtagtaagac tgcatttctc gggcaatcgc cgcgccggag gtttcgggtt cggtaacgcc
     2521 caaaccaccg ccctcgcctt tgaaaaccat gtccaaaccc tgtgcgattt gcgcttcatc
     2581 gccgaactct tgcagtggct gcaacaccag cgcgccttcg atgccggtac gcagcgtaac
     2641 gggcacgccg taatgccccg caatccgcaa gacttcctga atttcaaact ggctgccctt
     2701 gcgcccgccg tgttttttgt cgaggaaggg caacagcaaa cccgcctgct tcaaggcaag
     2761 ccatttgtct tcgggcaggt atcgcatcag gtcgataccg tctgaaaaaa tgcggcggaa
     2821 tgcggattcg atgtgcttta aaaaagcagc cgtgtccata gttgacggct gcgcgctcgg
     2881 ttcggtgtgt atcatcggct tcctctgtcg gttcccatta atcggcggcc ggtcaaaccg
     2941 cctgccacag tttagagttg attttctaaa ctttaccaca aagtgcgccg ggcaacaatc
     3001 cgccgacctt tcagacggca tcgcgccccc tcccgtgcta aaatgaccgt ttgcatcact
     3061 gtccgccgat tgccgcacta tgacctaccc catccccaaa ccccgtgaaa aatcccgttg
     3121 gtccaatctt tcgcaaggct cgctgccctt ggctttggcg cgttatctgc cgcataagcg
     3181 gctcaaggtc gtgctgaccc aagatgcgga acaggcgcta cgccttcaga cggcatggcg
     3241 gtttttccgt ccgcacgaca cggcggtgtt cctgccggac tgggaaacgc tgccttacga
     3301 gcgtttttcg ccgcatcagg atttggtgtc ggaacggctg tcggcgttgt ggcagattaa
     3361 gagcggcgcg gcggacgtgt tgttcgtgcc ggttgccacg gcgatgcaga agctgccgcc
     3421 cgtgccgttt ctggcagggc gcacgttttg gctgaaaaca gggcagactt tggatatagg
     3481 ccgtctgaaa accgatttgg tagatgcggg ctacaaccat gtttcccatg ttgttgcggc
     3541 gggcgagttt gccgtgcgcg gcggcattgt cgatttgttc cccatgggca gcgaaatgcc
     3601 ctatcgcatc gatttgtttg acgatgaaat cgacagcatc aaaacctttg atacggacac
     3661 gcagcgcacc atctcccccg tttccgaaat ccgcctgctg ccggcgcacg agttccccac
     3721 cgacagcgaa gcgcaaaaaa tcttccgcag ccgcttccga gaagaagtcg acggtaatcc
     3781 gaacgatgcg gctgtgtaca aagccgtcag caacggccac ttcggcgcgg gcgtggaata
     3841 ttatctgccg ctgttttttg aaaatgagct ggaaacgctg tttgactata tcggcgaaga
     3901 cgcgctgttt gtctctttgg gcgatgttca cgccgaggca aaccgctttt ggagcgatgt
     3961 caaatcccgt tacgcgatgg cgcagggcga cgaaacctat ccgcctttgc ttccacagca
     4021 tttgtatctc tctgctgatg tttttgcagg ccgtctgaaa aactacggac aagtgctgcc
     4081 cgatgtttcc ggcaaggaac acaccctgcc tgaccttgcc gtcaaccgcc aatccgacga
     4141 gccgttgcag gcattgaagg attttcagac gacctttgac gggcggattc tgctgtgcgc
     4201 cgaaagcttg ggacggcgcg aaaccatgct cggtttcttg cagcaaaacg gtttgaaagc
     4261 caaacctgtg tccgactggc agggcttctt gtcggcgcat gagccgctga tgattacggt
     4321 cgcgccgttg gcatacgggt tcaaactggg cggattgcaa tccccgaacc agcagcaaac
     4381 tacttccgcc tccgagggag aaggcgatgc ggttaccgac caaaccgaat tttccgcagc
     4441 cgcaacaaac cctctcccta gccctctccc gcaggagagg gaacaaagtg ccgccgccgt
     4501 ttcagacagt ctgaaagcag ccgccgtttc aaccgaaagc agcctgcccc tcggtacaag
     4561 taatctgcac gggcaaatcc gacagcaacc tgccccttcc cccgtggggg agggttgggg
     4621 agagggcaaa gcagttgccg ctcaaaccga attttccgca gccgcaacaa accctctccc
     4681 tagccctctc ccacaggaga gggaacaaag tgcagccgtc gtttcagaca gtctgaaagc
     4741 agccgccgtt tcaaccgaaa gcagcctgcc ccccggtaaa agtaatctgc acgggcaaat
     4801 ccaacagcaa cctgccccct cccccgtggg ggagggttgg ggagagggca aagcagttgc
     4861 cgctcaaagt gccatcgccg tcatcaccga atccgatctc taccaatacg tcgcccgttc
     4921 gcgcgtccac aaccgccgca agaaacacgc cgccgtttca gacggtctgt tgcgcgacct
     4981 tgccgaaatc aacatcggcg accccgtcgt tcacgaagaa cacggcatcg ggcggtatat
     5041 gggcttgatc acaatggatt tgggcggcga aaccaacgaa atgatgttgc ttgaatatgc
     5101 aggcgaagcg cagctttatg tgcctgtttc gcaactgcat ttaatcagcc gctactccgg
     5161 tcaggcgcat gaaaacgtcg ccctgcacaa gctcggcagc ggcgcgtgga acaaagcgaa
     5221 acgcaaagcc gccgaaaaag cgcgcgatac cgccgccgag ttgctcaacc tctacgccca
     5281 acgcgctgcc caatcgggac acaattttga aatcaacgag ttggactatc aggcgtttgc
     5341 cgacggtttc ggctacgagg aaaccgaaga ccaggccgcc gccatcgccg ccgtgattaa
     5401 agacctgaca caggcgaagc cgatggaccg actcgtgtgc ggcgatgtcg gctttggcaa
     5461 aaccgaagtc gccctgcgcg ccgcgtttgt ggcggtgatg ggcggcaaac aggtcgccgt
     5521 actcgcccca accacgcttc tagtcgagca gcacgcgcaa aactttgccg accgtttcgc
     5581 cgatttcccc gtgaaagtcg ccagcctttc gcgtttcaac aacagcaaag ccaccaaagc
     5641 cgcactggaa ggcttggcgg acggcacggt cgacatcgtt atcggcacgc acaaattggt
     5701 gcaggacaac atcagattca aaagcttagg tttagtgatt atcgatgaag aacaccgctt
     5761 cggcgtgcgc cagaaagaac agctcaaacg cctgcgcgcc aatgtcgata tccttaccat
     5821 gaccgccacg ccgattccgc gcaccctcag catggcactc gaaggcctgc gcgacttctc
     5881 gctgattacc accgcgccca gccgccgcct cgccgtgaaa acctttgtca aaccgttcag
     5941 cgaaggcagc gtgcgcgaag ccgtgttgcg cgaactcaaa cgcggaggac aggtattttt
     6001 cctgcacaat gaagtagata cgattgaaaa tatgcgcgag cggctggaaa ccctgctgcc
     6061 cgaagcccgc atcggcgtgg cgcacggaca actgcgcgag cgcgagctgg aacaagtcat
     6121 gcgcgacttt ttacagcaac gattcaacgt gttgctctgt tccaccatca tcgaaaccgg
     6181 tatcgacatt cccaacgcca acaccatcat catcaaccgc gccgacaaat tcggactggc
     6241 gcaactgcac cagcttcgcg ggcgcgtcgg acgcagccac caccaagcct acgcctacct
     6301 gctcacgccc gaatacatca ccaaagacgc agaaaaacgc ctcgacgcca tcgcggcagc
     6361 agacgaactc ggcgcaggtt tcaccctcgc catgcaggat ttggaaatcc gcggcgcagg
     6421 cgaaatcctc ggcgaagggc agtccggcga aatgatacag gtcggcttca cgctctacac
     6481 cgaaatgctc aaacaagccg tgcgcgatct caaaaaaggc cgccaacccg acctcgacgc
     6541 gccgctgggc atcaccaccg aaatcaaact gcacagcccc gccctactgc ccgaaagcta
     6601 ctgccccgac atccacgagc gtctcgtcct ctacaaacgc ctcgccgtct gcgaaaccgt
     6661 gcagcaaatc aacgccatac acgaagaact cgtcgaccgc ttcggcctgc ccgaacaacc
     6721 cgtcaaaacc cttatcgaaa gccaccacct gcggcttatg gcaaaagaat tgggtatcga
     6781 tgccattgat gcggccggcg aagcggtaac ggtaaccttc ggtaaaaaca ataatgtcga
     6841 tccaaccgaa atcatcctgc tgattcagaa cgacaaaaaa taccgccttg ccggcgccga
     6901 taagctgcgg tttaccgcag agatggaaaa tatcgaggtc agaatcaaca ccgtaaaaaa
     6961 cgttttaaaa accttgcaaa acagatgcct gcccaaataa agccgacacc gcaatgccgt
     7021 ctgaaacacc gttttccttg tccgaaagcc gccattatga atttgaagga aactccacta
     7081 taatacggca ttcagatctc cagacggcat cgcgcccgtc agaccgcaca caaaccaaaa
     7141 ggaaatacat gttccgtact atgcttggcg gaaaaatcca ccgcgccacc gttaccgaag
     7201 ccgatttgaa ctacgtcggc agtattaccg tcgatcaaga cctgttagac gcagcaggca
     7261 tctaccccaa cgaaaaagtc gccatcgtca acaacaacaa cggcgaacgt tttgaaacct
     7321 ataccatttc aggcaaacgc ggcagcggcg tggtctgcct gaacggggcg gcggccaggc
     7381 tggtacagaa aggcgatatc gtcatcatca tgtcttacgt ccaactctcc gaacccgaaa
     7441 tcgccgcaca cgaacccaaa gtcgtcttgg tagacggaaa caacaaaatc cgcgacatca
     7501 tctcctacga gccgccgcac accgtgctgt aaccctgaaa acggacattg accatggata
     7561 ttaaaatcaa cggcattacc gtcggtaacg atgctccttt cgtactgttc ggcggcatca
     7621 acgttttaga agatttggat tccaccctcc aaacctgtgc gcattacgtc gaagttaccc
     7681 gaaaactcgg tattccctat atctttaaag cctctttcga caaggcaaac cgttcctcca
     7741 tccattctta tcgcggcgta ggcttggaag aaggcttaaa gatttttgaa aaagtcaaag
     7801 cagagttcgg catccccgtc attaccgacg tacacgaacc ccatcagtgc caacccgtcg
     7861 ccgaagtgtg cgatgtcatc cagcttcccg cctttcttgc gcggcagacc gatttggtgg
     7921 ccgcaatggc ggaaacgggc aatgtcatca acatcaaaaa accccagttc ctcagccctt
     7981 cgcaaatgaa aaacatcgtg gaaaaattcc gcgaagccgg caacgggaaa ctgattttat
     8041 gcgaacgcgg cagcagcttc ggctacgaca acctcgttgt cgatatgctc ggtttcggcg
     8101 tgatgaaaca aacctgcggc aacctgccgg ttattttcga cgttacccat tccctgcaaa
     8161 cccgcgatgc cggttctgcc gcatccggcg gtcgtcgcgc acaggctttg gatttggcac
     8221 ttgcaggcat ggcaacccgc cttgccggcc tgttcctcga atcgcacccc gatccgaaac
     8281 tggcaaaatg cgacggcccc agcgcgctgc cgctgcacct tttagaagat tttttaatcc
     8341 gcatcaaagc attggacgat ttaatcaaat cacaaccgat tttaacaatc gagtaacacg
     8401 gtttcgcctt atgatgcaga ctttccgaaa aatcagcctg tatgccgcaa ccttgtggct
     8461 cggtatgcag attatggcgg gttatatcgt cgcgccggtg ctgttcaaaa tgctgcccaa
     8521 aatgcaggcg ggcgaaattg ccagcgtatt gttcaacatc ctctcttgga gcgggcttgc
     8581 cgtttggggc gcggtactgg ctgccgcctt tgccgcccta acccggcggc aaaccgccct
     8641 gctgcttttt ttattgtccg cccttgccgc caaccgattc ttgattacac ccgttatcga
     8701 ggcgctgaaa tacgggcatg agaattggct gttgtcgttt gtaggcggat ccttcggaat
     8761 gtggcacggc atttccagta ttgtttttat ggcaaccgcc ctactttcag cagttttaag
     8821 ttggcggctt tccagcaaag aggccgtctg aagccctccc attttttacc tcccttcact
     8881 tcacttggag aacattcatg agcgcaatcg ttgatatttt cgcccgcgaa attttggact
     8941 cacgcggcaa ccccacagtc gagtgtgatg tattgctcga atccggcgta atgggacgtg
     9001 cagccgtacc gagcggtgcg tccaccggtc aaaaagaggc tttggaactg cgcgacggcg
     9061 acaaatcccg ttattcgggc aagggcgtat tgaaggcggt cgaacacgtc aacaaccaaa
     9121 tcgcccaagc cctcattggt atcgatgcca gcgaacaatc ttatatcgac caaatcatga
     9181 tcgaattgga cggtactgaa aacaaaggta acttgggtgc caacgcgact ttggccgttt
     9241 ctatggccgt agcacgcgca gccgctgaag atgcagggct gccgctttac cgctacttgg
     9301 gcggcgcagg tccgatgtcc ctgcccgtac cgatgatgaa cgtcatcaac ggcggcgaac
     9361 acgccaacaa cagcctgaac atccaagagt ttatgattat gcccgtcggc gcaaaatctt
     9421 tccgcgaagc gttgcgctgc ggtgcggaaa ttttccacgc cttgaaaaaa ctgtgcgaca
     9481 gcaaaggctt cccgaccaca gtcggcgacg aaggcggttt cgcccccaac ctgaacagcc
     9541 acaaagaagc cctgcaactg atggtcgagg cgaccgaagc cgccggctac aaagcgggcg
     9601 aagacgtatt attcgcattg gactgcgcct ccagcgagtt ctacaaagac ggcaaatacc
     9661 acttggaagc cgaaggccgc tcctacacca acgcggaatt tgccgaatat ctggaaagtc
     9721 tggtcaacga gttccccatc atctccatcg aagacggcat ggatgaaaac gactgggaag
     9781 gctggaaact gctgaccgaa aaactgggcg gcaaagtcca actcgttggc gacgacctct
     9841 tcgttaccaa cccgaaaatc cttgccgaag gcattgaaaa aggcgtggca aacgcactat
     9901 tggtcaaagt caaccaaatc ggtactttga gtgaaaccct gaaagccgtc gacttagcca
     9961 aacgcaaccg ctacgccagc gtaatgagcc accgctccgg cgaaaccgaa gacagcacca
    10021 ttgccgactt ggcagtcgcc accaactgta tgcagatcaa aaccggttct ttgagccgtt
    10081 ccgaccgcat ggcgaaatac aaccaactgc tgcgtatcga ggaagaattg gcggaagccg
    10141 ccgactaccc cggcaaagcc gcattctacc aactgggcaa ataaaaaagg ttaaggtatg
    10201 aagtgggtaa ctgtcgtttt atccttcgca cttgtctgtt gccaatacag cctctggttc
    10261 ggcaaaggca gcatcggacg caacagcagt ctgagagaac agattgccgt tcaagaagaa
    10321 aaaaaccaga cactcgccct acgcaatcat tcccttgccg ccgaagtcta tgatttggaa
    10381 aacggtcaag aagccatttc ggaaatcgcc cgggtagaac tgggttatat ccaagacggt
    10441 gaaacctttt accgactcat caggcataac cggtaatacc gtcaaaaagc cgtccgaacc
    10501 aatgttcgga cggcttttat ttcaacaaac tgtcagacag cccctcatcc tcccccgaca
    10561 aaccgcaatc cagcctgaca tccccctcga cgcaacagca gcacggcagt atctcgtccc
    10621 gccccaaaaa agccaaaggc ggctcccgat aagtaacgct tccctccaaa atcttcactc
    10681 ggcacgatcc gcaatatccg cttcggcact gatattccac catatgcccc gtccgttcca
    10741 agccttccaa cagggtctcg ccctccaaga gctcaaaaaa acccttattc gtaccaatgc
    10801 gcgccatttc cgaccaatca aa
//
LOCUS       DAWGNT010000054        10757 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.054, whole genome shotgun sequence.
ACCESSION   DAWGNT010000054 DAWGNT010000000
VERSION     DAWGNT010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10757
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.054"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(120..815)
                     /locus_tag="WHR98_000995"
     CDS             complement(120..815)
                     /locus_tag="WHR98_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEZ2307687.1"
                     /translation="MKLKTLALTSLTLLALAACSKQAETSVPADSAQSSSSAPAAPAE
                     LNEGVNYTVLSTPIPQQQAGKIEVLEFFGYFCPHCAHLEPVLSEHIKTFKDDTYMRRE
                     HVVWGDEMKPLARLAAAVEMAGESDKANSHIFDAMVNQKINLADTDTLKKWLSEQTAF
                     DGKKVLAAFEAPESQARAAQMEELTNKFQISGTPTVIVGGKYQVEFKDWQSGMTTIDQ
                     LVDKVREEQKKPQ"
     gene            complement(986..1645)
                     /locus_tag="WHR98_000996"
                     /pseudo
     CDS             complement(986..1645)
                     /locus_tag="WHR98_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218694.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
     gene            complement(1843..3953)
                     /locus_tag="WHR98_000997"
                     /pseudo
     CDS             complement(1843..3953)
                     /locus_tag="WHR98_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226965.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(4139..4744)
                     /locus_tag="WHR98_000998"
     CDS             complement(4139..4744)
                     /locus_tag="WHR98_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEZ2307688.1"
                     /translation="MTRQSLQQAAESRRSIYSLNKNLPVGKDEVVQIVEHAVLHTPSS
                     FNSQSARVVVLFGEEHDKVWQFVEDALRAVVPADSFEPTAQKLNLFKAGAATILFYED
                     QNVVKGLQEQFPAYAANFPVWADQANAMVQYAVWTTLAAVGVGANLQHYNPLPDAAIA
                     KAWNIPENWLLRAQMVIGGIEGAAGEKTFEPVAERLKVFGA"
     gene            complement(4793..5191)
                     /locus_tag="WHR98_000999"
     CDS             complement(4793..5191)
                     /locus_tag="WHR98_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEZ2307689.1"
                     /translation="MSDCCNRIQPVLLSVLRIVTAYLFLLHGTSKIFAFPIEMGSGSP
                     GGLLLLAGILEIVGGILLVLGLFARPAAFVLSGQMAVAYFMAHASGNALFPIANGGES
                     AVLFCFVFLYIAAAGGGAWSLDRLFFKRKA"
     gene            5299..6210
                     /locus_tag="WHR98_001000"
     CDS             5299..6210
                     /locus_tag="WHR98_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEZ2307690.1"
                     /translation="MDTLFSLKVFRQVVQSGGFTRAADALGISTAMASKHVSHLENTV
                     QAKLLHRNSRNLSLTEAGEEYYRQCSYALDTLDDAAQKAAGGTEKPQGLLRVTMPLWF
                     AGSQICNWLAEYRERYPEVTLELILDNRHVDLIAEGVDLALRVSQTLSPSLIARPLAE
                     IEFALLASPDFLRRNGVPETPEEVAGLPAVLPTYTNQQKLDLTRKSDGKKYRLELTPV
                     IRTDNTLMMREMIKAGACIGYQPLWAAEHDLRCGTLVRLLPGYAVPTDRLNAVYADRA
                     FLSAKVRSFIDFLNEKIASRKGCRNAV"
     gene            6200..7501
                     /locus_tag="WHR98_001001"
     CDS             6200..7501
                     /locus_tag="WHR98_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HEZ2307691.1"
                     /translation="MPSETARPLYADTCAAHTLVWFRQNLRIRDNAALCTAVAEGLPV
                     IGIWIDDAETDNPRRAAFYRQSAAELAQGLAGRGIPLYTAASPAELVRLAVRLNIRAV
                     IADESHTFADKLADNALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYRE
                     VWLDRFSKQPPAGPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRF
                     LEQADSYSVLKDFPSRKHTSLMGAYLSAGCISPRLLARESLERRLNAWADNIIRRDFF
                     LQLALQHTDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPALRRLSA
                     DFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHTCPDIAAASYRTDPDGT
                     FIKRHIPELAHLSADTVHTPWRFACSVDTHGYPAYPVAGIP"
     gene            complement(7568..7792)
                     /locus_tag="WHR98_001002"
     CDS             complement(7568..7792)
                     /locus_tag="WHR98_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307692.1"
                     /translation="MVFWLQRLKYPLLLWIADMLLYRLLGGAEIECGRCPVPPMTDWQ
                     HFLPAMGTVSAWVAVIWAYLMIESEKNGRY"
     gene            7895..10045
                     /gene="dinG"
                     /locus_tag="WHR98_001003"
     CDS             7895..10045
                     /gene="dinG"
                     /locus_tag="WHR98_001003"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HEZ2307693.1"
                     /translation="MLTDLEKNAIRDHYQNIGKNLPGFRPRASQREMIAAVANAFSRT
                     LAREEGGEPPKREGESIAVIEGPTGVGKSLAYLLAGGIMAQTRGKRLIVSSATVALQE
                     QLVDRDLPFLVEKSGLELTFALAKGRGRYLCPYKLYQLTQSNAQQNLLGFEAPAVLWD
                     SKPKPEELKLLRDIADEFSARRFNGDRDTWPEKIDDAIWLKVTNDRHGCLKTACPNRP
                     ECPFYLARDVLETVDVVVANHDLLLADISMGGGVILPAPENSFYCIDEAHHLPKKALS
                     RFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELANLADEAAASLLDSLHEWQFHLAE
                     EPSLSLGVSENDRRTNSEPTWLWEDGKIPEGLETTVSNTAIAARSLLKHVVGLNDALS
                     AARREKEQDSALLDRLTGEFGLFIARIEQISAVWDLLSTVPLEGEEPLAKWITRRADD
                     KNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGNFNLMLRQTGLQWLPETTT
                     LALKSPFDFEKQGELYIPPIYASPKDPEAHTAAVIEWLPKLISPTEAIGTLVLFSSRK
                     QMQDVALRLPGDYLPLLLVQGELPKAVLLQKHHRAIEEGKASIIFGLDSFAEGLDLPG
                     TACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKLIQAVGRLIRT
                     EQDYGRVTILDNRIKTQRYGQQLLAGLPPFKRIG"
     gene            10082..10696
                     /locus_tag="WHR98_001004"
     CDS             10082..10696
                     /locus_tag="WHR98_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HEZ2307694.1"
                     /translation="MNFTRLLNQVLSTVQKKGGTFSDSPLNSFGGGALVAGIASMLLN
                     GKNRKTITKIGSTAALGYLAYRGYQMWQQNKGRATVTQSDFQPAGETEETYSRTVLRT
                     MIAAAASDGMIDEAKRRTIEQESGTDPETAAWLAAEYRLPASIEDIAAAVGNDEALAA
                     EAYLAARLVCADLSRKETVFLARLSQALKLDDNLVESLERQLGF"
BASE COUNT         2554 a         3053 c         2712 g         2438 t
ORIGIN      
        1 ctatatattc tgatttaaaa ccataaggct ttaagcaatc atctcttcta taaagcctaa
       61 atacaaaagg ccgtctgaaa tcctattttc agatggcctt tactcattca atcctcaact
      121 tattgcggct ttttctgctc ttcgcgtact ttatccacca actggtcaat cgtggtcata
      181 ccggactgcc agtctttaaa ttcaacttgg tatttgccgc cgacaatcac agtcggtgtg
      241 ccgctgattt ggaatttatt ggtcaactct tccatttgag ccgcacgcgc ttggctttca
      301 ggagcctcaa atgcagccaa tacttttttg ccgtcaaacg ctgtttgctc ggacagccat
      361 tttttcaggg tatcggtatc ggccagattg attttttgat taaccatcgc atcgaaaata
      421 tggctgttgg ctttatctga ttcaccggcc atttccactg cggccgccaa acgtgccaaa
      481 ggtttcattt catcacccca cacgacatgc tcccggcgca tataggtatc gtctttaaac
      541 gttttgatgt gctcgctcaa gaccggctca agatgggcgc aatgcgggca gaagtagccg
      601 aaaaattcca atacttcgat tttaccggcc tgctgttgcg gaataggcgt agacaataca
      661 gtgtagttca caccttcgtt caactcagca ggggctgccg gagcagatga gctgctttgg
      721 gcgctgtctg ccggaacact ggtttcagcc tgtttgctac aagcggccaa tgccaacagg
      781 gtcaatgaag tcaaagctaa ggttttcagt ttcataggta tctcttgtgt gtcagattaa
      841 tgtgcggatt ttatggcatt ttattgaagg cgtgttcgat ttgagtgaaa aaatgtgttt
      901 agttttattt cagcctttat aaaggccgtc tgaaatatgg cttagataat tagccttatt
      961 ttcagacggc ctttgttcta gtaatttacg gtttcggaca ttttgtcttc aatccgtcga
     1021 tgtgttccat taagtcaggt gggacatgat tccacatagg atcaagaata aaatcgatac
     1081 cttcccgtct ggctaatttg gctgctggga caaaatcgga atcaccagaa aacaagatga
     1141 ttttatcggc ttgttttttt aaggtaatag atgaaatatc caagcctata cgcatatcta
     1201 cacctttttg tttaacatcg agcacgacat cgttttccgt aatttgagtt gacgggtttt
     1261 tcagaagatt tttcatgact tggggtttta atatccatgc tgtattgtcc gacagcttgc
     1321 ctaaacgtaa cgctaattta cgcttcttct tcaattcggt atgcagattg caacgaaata
     1381 tggcttccgg agtctttgaa aaatctatgg cacgatgaga tacgggattg tgcattttct
     1441 tttcaaacgg cacgcagtct taaaagaaaa ttctatataa atcatccatt tgatctgtgc
     1501 cgttgatttt atctttcaga tgcagcatcg aatatcggaa agccaaatca gcaattcttt
     1561 ttgcatcgtg tggattttga gacaggccta atgaccgtac ccgcttaata aaaaatgcac
     1621 cgtcaatcaa aatggcggtt ttcatattgc ttcccctata tttgtcaaag atataaaaaa
     1681 gcccttggga tcggcatacc cgctatgatt taatgggtaa tgcgtactgc caagggcgct
     1741 atttcttttt ggattatact gatgtagata aagcctgtca aaaagttcgt atgctgaatt
     1801 tacggattat caggattttc agacggcctt tgcctgattt catcagaaac ggtaatttac
     1861 ccgggcagta tagccgcgcg gattacccgg catagagtcc gaacgccaat atttttgatt
     1921 gaacagattg gctgcggcaa aggtaacgtt aacattttta tggttccagc caagcatggc
     1981 atcaactcgg gcaaagcctg gaagcgtagt cacttcttta tttcttgagt tgtaaccgta
     2041 gcgtttgcct gtaccggtta cgccgatttc gccgtagagg ttttcggtcg gtgtataacg
     2101 gaaaaacagg ttgccggtaa cgttgctggt attattcaaa tggatgccca ctcggtcggg
     2161 atttttttgt cttcaacgac tttcgcctgc atcacgccca acgaaccgcg cagatagagt
     2221 tttttgggga tgatttgccc gatggcggac aattccacgc cacgcgaacg gtgtttgccg
     2281 ccgactgccc aagtgtaggg attattttcc gcgtcggggc ggtagcggat attgaagcgt
     2341 tcgatttggt aggcggacaa tgtggtgtcc aaacgattgt ccagccaact gcttttgacg
     2401 ccggtttcgt attggcgggt gtactcgggg tcggcgttaa acacggcaga agatgacgta
     2461 tcgatgctca aatagccgcc gcgtccgcca taaggcgcga aacctttgtt atacgaggcg
     2521 taaagtgtgt gaacggggtt gatgttccac actgcgccga tgttggggct gaacgagtgg
     2581 ccgctgtact ggcggctgtt gccggtgagt ttgttttcgg aattaaaggt gtatttgtcg
     2641 taacgaccgc cgaggacgaa tttcaagtcg ggcgtggcgg agaagatgtt ttgcacgaaa
     2701 atgccgtagg agtcggcttt gtggcggttt tgggtgaaga cgggttgcag cctgcccgaa
     2761 gccggccagc ttgcgcggtc gtaggggttg atggaggcgg taaaggggcg gttgtaacct
     2821 aatgtcgggt tgcggtgttc gcggctgtaa tccaggccta cggtcagatg gttttcaaaa
     2881 cggccgatgg tgtagtcgcc gttgagcgtg aagttggacg acagggtttt gttgtcggtc
     2941 tgctgccaag cgtagttgcg tttaattagg ctgccgtttt cgctgcctgc atagaaatga
     3001 tcaaaatcct gcgccgccgt gcggtgggcg agctgccatt gggcacgcca tttgtcgttg
     3061 aaggcgtatt caaggtcgga acgccaaact tgcagcttgt ctttgacaaa atcgttccgg
     3121 tgggcgaacc ccatgcggta aggcagtccg aagcggtcgt acacggactt ggtcggactg
     3181 cggtcgggcg tgcgctccac attgtcgtag gtgtattgcc ccgtccactt caagccgttg
     3241 tcgagtttga cggtaatact gggcgaaacc atgacatttt tgctgtctat gccgctgcgg
     3301 aacgaattgg cgcgcccgac ttcgccggta agacggatgg cgacgttttt gttcagcact
     3361 tcgttaatgt ccatattcag gctgcggttt gcccacgaac cgtaaaccgc accgatgttg
     3421 cggctttgtt tgaagttggc gtatttgctg accatgttga tgacgccgcc gccgttggtg
     3481 cggccgtaaa gcacggaaga cgggcctttc aggatttcca cgcgctcgat gttggcagta
     3541 ctgcggcgca cttgtccgct ttcgcgcacg ccgtcgcggt aaatatcgga tgcgtcggct
     3601 tgaaaaccgc gcaggaaaat gctttcaccg cgcatatcgt aggcagcgtc gatgccggca
     3661 ttgccttcga ggatggaact caaatcgttc gtgccgtaat ttttgttttt ctggatattg
     3721 agcgtatcga tggtttgcgg cgtttctttg atgagctgtc cgttgcgggt aacggcggct
     3781 tcgtcgtagt tgatgtagcc tttgagtacg ctggtgtcgg actgtccgac cacggaaacg
     3841 gtaggtagcg tggcggtgta atgttcacca ttgtcctgcg tatcggcggc agcaacaggg
     3901 aaggaagcaa taatcagcgt gggtaataaa gctaaatgaa atgatatttt catttttata
     3961 ctcaatttaa caaaacaacc gaattatatt gcctcacgga ggaaatgaga ataatttctt
     4021 ttaactatat tgaacatgat atttgtaaac aaaggtctca gaatgcggaa aactcgccgc
     4081 ctgatactga aaaatgccgt ctgaacagag ttcagacggc atttttttga ccgcgaaatt
     4141 atgcgccgaa cactttcaaa cgttctgcaa ctggttcaaa ggtcttttca cctgccgccc
     4201 cttcaatacc gccgataacc atttgtgcgc gcaacaacca gttttcgggg atattccacg
     4261 ctttggcaat cgccgcatcg ggcaagggat tgtaatgttg caggtttgca cctacgccga
     4321 ccgcggcaag tgtcgtccaa acggcatact gcaccatcgc gtttgcctgg tccgcccaaa
     4381 cggggaagtt agcggcataa gcagggaact gctcctgcaa acctttgacg acattttgat
     4441 cttcataaaa caaaatggtt gccgcacccg ccttaaacag gttcaatttt tgcgcggtcg
     4501 gttcaaaact gtcggcaggc acgacggcac gcagcgcgtc ttcgacaaat tgccacacct
     4561 tatcatgctc ttcgccaaac agcacgacca cgcgggcaga ttgggaattg aacgaagaag
     4621 gtgtgtgcaa aacggcgtgt tcgacgattt ggacaacttc atctttgccg acgggcagat
     4681 ttttatttaa cgaataaatg gaacggcggc tttcggcagc ctgttgcaga gattgacggg
     4741 tcatttcttt tcctcaaaaa cattcaacaa aatacacttt aggcagtccg attcaggctt
     4801 tacgcttgaa aaacagcctg tccagcgacc atgctccgcc gcccgccgcc gcgatataga
     4861 ggaatacgaa gcagaacagc actgcggact cgccgccgtt ggcaatcggg aacaaagcat
     4921 ttccggaagc gtgcgccata aaataggcaa ccgccatctg gccggacaaa acaaacgcgg
     4981 cagggcgcgc aaacaggccc aacaccagca aaatgccgcc gacaatttct aaaataccgg
     5041 caagcagcaa cagcccgccg ggcgaaccgc tgcccatttc aatggggaag gcgaagattt
     5101 tcgacgtacc gtgcaacaaa aacaggtaag cggttacgat acgcaaaaca gaaagcaaaa
     5161 ccggttggat acggttgcag caatcggaca taaaagctcc tttgatattt gtcttcattt
     5221 caggcggtag agtatagatg tttccccttt tcaaatatat actgctttta ttgatacaac
     5281 ttttccacac aagaaaatat ggacaccctg ttcagcctca aggttttccg ccaagtcgtc
     5341 caaagcggcg gcttcacccg cgccgccgac gcgctcggca tctccaccgc aatggcaagc
     5401 aaacacgtca gccacttgga aaacaccgtc caagccaaac tcctgcaccg caacagccgc
     5461 aacctcagcc tgaccgaagc cggggaagaa tactaccggc aatgcagtta cgcgctcgac
     5521 acgctcgacg atgccgcgca aaaagccgcc ggggggacgg aaaaaccgca ggggctgctg
     5581 cgcgtaacga tgccactgtg gtttgccggc agccagatat gcaactggct ggcggaatac
     5641 cgcgaacgtt atcccgaagt gacattagaa ctgattttgg acaaccgcca cgtcgatttg
     5701 attgccgaag gcgtggattt ggcgttgcgc gtttcccaaa ccctgtcccc gtcactgatt
     5761 gcgcgcccac tggcggaaat cgaatttgcc ctgcttgcct cgcccgactt cctgaggcgc
     5821 aacggcgtgc cggaaacgcc ggaagaagtg gcggggctgc ccgccgtcct gccgacctac
     5881 accaaccagc agaaactcga cctcacccgc aaatcggacg gcaaaaaata ccggcttgaa
     5941 ctgacccccg tcatccgtac cgacaacacg ctgatgatgc gcgaaatgat taaggcgggc
     6001 gcgtgcatcg gttatcagcc gctttgggcg gcggaacacg atttgcgctg cggcacgctg
     6061 gtgaggctgc tgcccggata cgccgtcccg accgaccggc tgaatgccgt ttatgcagac
     6121 agggcattct taagcgcgaa agtccgcagc ttcatcgatt ttctgaacga aaaaatcgcc
     6181 agcaggaaag gctgccgaaa tgccgtctga aaccgcccgc cccctttatg cggacacgtg
     6241 cgccgcacac acgctcgtct ggttccgcca aaacctccgc atccgcgaca acgccgcctt
     6301 atgcaccgcc gttgccgaag gtttgcccgt tatcggtatt tggattgacg atgccgaaac
     6361 agacaaccct cgccgcgccg cgttctaccg ccaatccgcc gccgaactcg cccaagggct
     6421 tgcagggcgc ggcatcccgc tctacacggc ggcatcgcct gccgagctcg tccggctcgc
     6481 cgtccgcctc aatatccgcg ccgtcatcgc cgacgaatcc catacttttg ccgacaaact
     6541 cgccgacaac gccctttggc atgaattgga caaacacggc atcgcgttaa ccttcgtcaa
     6601 tgaccgcgcc gttttcggca aaaccgacct gatacccgac ggcggcacgg cacacaccga
     6661 tttcgaccgc taccgcgaag tatggctcga ccgcttttcc aagcagcccc ccgccggtcc
     6721 ggacctattc gcggcatacc gccaaccctt ccccgaaaac ctttccgccc cgccgcctgc
     6781 cgccctttca gacggcatct tcctgccgca aaacagcggc gaaacggcgg cttggcggca
     6841 gtggcggcgg tttctcgaac aggcggattc ctactccgtt ttaaaggatt tcccctcgcg
     6901 caaacacact tcgctgatgg gcgcgtattt gagtgccggc tgcatctcgc cgcgcctgct
     6961 cgcgcgggaa agcctcgaac gccgtctgaa cgcgtgggcg gacaacatca tccgccgcga
     7021 ttttttcctt caacttgcct tgcagcacac ggatgacgac ccttcagacg gcaatcctga
     7081 acacaccctg cgcctgacgc tttggcagca gggccagacc ggcattccga ttatcgatgc
     7141 cgcgatgcgc tgtttgcaca aaaccggcag cctccacccc gccctgagac gcttgagcgc
     7201 ggattttttc tgccacgttt taaacctccc ccgccgcgaa ggcgagatat ggtttgcccg
     7261 acagctgacc gatttcgatg cggcaatcaa ccaaggcaac tggtggcttg ccgcctcacg
     7321 gcacacctgc cccgacattg ccgccgcctc ataccgtacc gacccggacg gtacttttat
     7381 caaacggcac attcccgaac tcgcccacct gtccgccgac accgtccaca cgccttggcg
     7441 gtttgcctgt tcggtcgata cccacggcta tcccgcctat cctgtcgccg gtattcccta
     7501 agcggtacgg aacctaaaac aaatgccgtc tgaacttccg tttcagacgg cattgcgtcc
     7561 gaatgactca atatcttccg tttttttcac tttcaatcat caggtatgcc caaatcaccg
     7621 ccacccaagc cgacaccgtt cccatcgccg gcaaaaaatg ctgccaatcc gtcatcggcg
     7681 gcacagggca acggccgcat tcgatttccg cgccgcccaa caaccggtac agcaacatat
     7741 ccgcaatcca aagcaacaac gggtatttca aacgctgcaa ccaaaaaacc aaccacgtcc
     7801 gcacgattca cctcaccccc cattccgaca acgatattgt accgcttccg tgcaatgtta
     7861 aaataagccc acttctaccg ccgtacaaaa cgccatgctc accgatttag aaaaaaacgc
     7921 catccgcgac cattaccaaa acatcggcaa aaacctgccc ggtttccgtc cgcgcgcttc
     7981 gcagcgggaa atgattgcgg cggttgccaa cgctttttcg cggacgttgg cgcgcgaaga
     8041 aggcggcgag ccgcccaagc gcgagggcga gagcatcgcc gtaatcgaag ggccgaccgg
     8101 cgtgggcaaa tcgcttgcct acctgctggc gggcggcatc atggcgcaaa cacgcggcaa
     8161 gcggctgatt gtgagcagcg cgacggttgc cttgcaggag cagttggtag accgcgacct
     8221 gccgtttctg gtcgaaaaaa gcggtttgga actgaccttc gcacttgcca aagggcgcgg
     8281 ccgctatctc tgcccctaca aactctatca actgacgcaa agcaatgccc agcaaaacct
     8341 gctcggcttt gaagcccccg ccgtcttgtg ggacagcaaa cccaagcccg aagaattgaa
     8401 gctgctgcgc gacatcgccg acgaattttc cgcccgacgg ttcaacggcg accgcgacac
     8461 ttggccggaa aaaatcgatg acgcgatttg gctcaaagtg accaacgacc gccacggctg
     8521 cctgaaaacc gcctgtccca accgtccgga atgtccgttt tacctggcac gcgatgtctt
     8581 ggaaaccgtc gatgtcgtcg ttgccaacca cgatcttctg cttgccgaca tcagtatggg
     8641 cggcggcgtg attctgcctg cgcccgaaaa cagtttctat tgcatcgacg aagcgcacca
     8701 cctgcccaaa aaagccctca gccgttttgc cgccgaacat tcatggaata ttgccgtttg
     8761 gacgctggaa aaactgccgc agctgaccgg caaaattgcc gcgctgaccg ataaagccga
     8821 acttgccaac cttgccgacg aagccgccgc atccttgctc gacagcctgc acgaatggca
     8881 attccatttg gcggaagagc cgtctttaag tttgggggtg tctgaaaacg acagacgaac
     8941 caacagcgaa ccgacttggc tgtgggaaga cggcaaaatc cccgaaggcc tcgaaaccac
     9001 cgtttccaat acggccattg ctgcgcgcag cctgctcaaa cacgttgtcg ggctgaacga
     9061 tgcgctttcc gctgcgcgcc gcgaaaaaga acaagacagc gcgctcctcg accgcctgac
     9121 cggcgagttc ggtcttttta tcgcccgtat cgaacaaatc agcgcggttt gggatttgct
     9181 ctccaccgtc cccctcgaag gtgaagaacc gctggcgaaa tggataaccc gccgtgccga
     9241 cgataaaaac gactatattt tcaacgccag ccccatcagc agcgcatccc accttgccaa
     9301 cagcctgtgg cggcgtgcgg caggcgcggt attgacttcc gccaccctgc aatccttggg
     9361 caacttcaac ctgatgctgc gccaaaccgg gctgcaatgg ctgcccgaaa ccaccaccct
     9421 cgccctcaaa agcccctttg actttgaaaa acagggcgaa ctctacatcc cccccatata
     9481 cgccagcccc aaagaccccg aagcccacac cgccgccgtc atcgaatggc tgcccaagct
     9541 tatttcgccc accgaagcca tcggcacgct cgtcttgttt tcctcgcgca aacaaatgca
     9601 ggatgtcgcc ctgcgcctgc ccggagacta cctgccgctc ttgctcgtac aaggcgaatt
     9661 acccaaagcc gtcctcctgc aaaaacacca ccgggccata gaagaaggca aagccagcat
     9721 catcttcgga ctcgacagtt tcgccgaagg actcgacctg cccggcaccg cctgcgtgca
     9781 agtcatcatc gccaagctgc cgtttgcgat gcctgacaac cccatcgaaa aaacccaaaa
     9841 ccgctggata gaacagcgcg gcggcaatcc ttttattgaa atcaccgtcc ccgaagccgg
     9901 catcaaactc atccaggccg tcggccgcct catccgcacc gaacaagact acggccgcgt
     9961 aaccatcctc gacaaccgca tcaaaacaca gcggtacggc caacaattat tggccggcct
    10021 gccgccgttt aaaaggatag ggtaaacata ccgcccttcc cgcaacagaa aggaaaaatt
    10081 catgaacttt acccgactgc tcaaccaagt cttaagcacg gttcaaaaaa aaggcggcac
    10141 attctccgac agcccgctca attcattcgg cggaggcgcg ctggttgccg gtatcgcctc
    10201 catgctgctg aacggtaaaa accgcaaaac cattaccaaa atcggttcga ccgccgcttt
    10261 gggctacctc gcctaccggg gctatcagat gtggcagcaa aacaaagggc gggcaactgt
    10321 aacacaaagc gatttccaac ctgccggaga aactgaagaa acatacagcc gcaccgtatt
    10381 gcgcaccatg atagccgccg ccgcttcaga cggcatgata gacgaagcca aacgccggac
    10441 tatcgaacag gaaagcggca cagaccccga aactgccgca tggctcgccg ccgaataccg
    10501 cctgcccgca agcatcgaag acatcgccgc cgccgtcggc aacgatgagg cgttggcggc
    10561 ggaggcctat ctggcggcaa ggttggtctg tgccgatttg tcgcggaaag aaaccgtctt
    10621 cctcgcccgc ctgtcgcagg ctttgaaact ggatgacaat ctggtggaga gtttggaaag
    10681 gcaattgggg ttttgatgac acagccgggg agggaaaatc atcaaaaaac ggttattccg
    10741 accccagcct caaaacg
//
LOCUS       DAWGNT010000055        10681 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.055, whole genome shotgun sequence.
ACCESSION   DAWGNT010000055 DAWGNT010000000
VERSION     DAWGNT010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10681
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.055"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(187..1404)
                     /locus_tag="WHR98_001005"
     CDS             complement(187..1404)
                     /locus_tag="WHR98_001005"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEZ2307695.1"
                     /translation="MALIVHKYGGTSVGSPERIKNVAKRVAKARAEGHDIVVVVSAMS
                     GETNRLVALAHEMQEHPDPRELDVVLSTGEQVTIGLLAMALKDIGVDAKSYTGWQVAL
                     KTDTAHTKARIESIDDEKMRADLDAGKVVIVAGFQGISSEGDISTLGRGGSDTSAVAL
                     AAALKADECQIYTDVDGVYTTDPRVVPEARRMDTVTFEEMIELASLGSKVLQIRSVEF
                     AGKYKVRLRVLSSLQDGGNGTLITFEEDDNMERAAVTGIAFDKNQARINVRGVPDKPG
                     VAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSERQDSIGAVS
                     IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYME
                     LATRVLHKAFNLG"
     gene            complement(1606..2334)
                     /gene="rph"
                     /locus_tag="WHR98_001006"
     CDS             complement(1606..2334)
                     /gene="rph"
                     /locus_tag="WHR98_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HEZ2307696.1"
                     /translation="MPDYIRISRAADSLRDIKITPHFLPHADGSCLIECGNTKVICTA
                     SIDENVPPFLRGKNQGWVTAEYGMLPASTASRMRREASAGKQSGRTQEIQRLIGRSLR
                     AVVDMEKLGERQILIDCDVIQADGGTRTASITGAFVALQIAVGKLVSDGILSENPIRE
                     AVAAVSVGVVNGVPLLDLDYPEDSGCDSDVNIVMTASGKIIEIQGTAEDAPFSLDELG
                     KLVALAQKGIGELLQHQQNALSAA"
     gene            complement(2416..2880)
                     /locus_tag="WHR98_001007"
     CDS             complement(2416..2880)
                     /locus_tag="WHR98_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEZ2307697.1"
                     /translation="MYKHLVVAVDGSETSINALKHAAELAGVNSARLTLVHVANPAEY
                     MALAPEFLQHESYEAAAVAQGNEVLDAAERTARELGVENTVKHLLVANKGAREMAQDL
                     VDYADENGADLLVLGTHGRTGLMHLLMGSFAETVMRQSHLPLLIIRSKAEEA"
     gene            3097..3873
                     /locus_tag="WHR98_001008"
     CDS             3097..3873
                     /locus_tag="WHR98_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HEZ2307698.1"
                     /translation="MSDNALTSSRRFGGIARLYGDSALAHFSQAHVCVVGVGGVGSWA
                     IEALARTGIGRLTLIDLDNVAESNVNRQLHALTGDFGKAKVTALRERVAQINPGCQVF
                     EIEDFVTEDNLPEYFGKGFDFVIDAIDQVRVKAAMAAYFVERKQPFVLSGGAGGQKNP
                     ALIQTADLSRVTHDPLLANLRYTLRKRYGFSRDTKAKMRVPCVFSTENITPPQSGAAC
                     STDAAPQGLSCAGYGASMLVTASFGLYCAQAAVEHIADKK"
     gene            4011..4538
                     /locus_tag="WHR98_001009"
     CDS             4011..4538
                     /locus_tag="WHR98_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307699.1"
                     /translation="MEFVNNLVIFSFLLLMLIPIFFVVYGIYHKIRYRKIYILRISFT
                     LLVVILCSMYYIYCRYLDQQKVAYYCIDEQCISIVHLYKDYGINSPTYARIYAGKILF
                     RFQVRAKNYAELLMEDDISISKKILGNKFIIYGSLPVIYGNVDNIEVKEATGYIDRAS
                     TDYIVSRNLKFRHLY"
     gene            4709..5563
                     /locus_tag="WHR98_001010"
     CDS             4709..5563
                     /locus_tag="WHR98_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEZ2307700.1"
                     /translation="MPPIPAPSAPSEHTVAWVFGQPVTDLPQDLFIPPDALKVVLGSF
                     QGPLDLLLYLIRKQNIDVLDIPMVKITEQYLHYIAQIETYQFDLAAEYLLMAAMLIEI
                     KSRLLLPRTETVEDEEADPRAELVRRLLAYEQMKLAAQGLDALPRAGRDFAWAYLPLE
                     IAVEAKLPEVYITDLTQAWLGILSRAKHTRSHEVIKETISVRAQMTAILRRLNKHGIC
                     RFHDLFNPEQGAAYVVVNFISLLELAKEGLVRIVQEVGFGEIRISLNHEGAHSDGISG
                     TRGGRDVF"
     gene            5604..6812
                     /gene="pncB"
                     /locus_tag="WHR98_001011"
     CDS             5604..6812
                     /gene="pncB"
                     /locus_tag="WHR98_001011"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEZ2307701.1"
                     /translation="MTGIIHSLLDTDLYKFTMLQVVLHQFPQTHSLYEFRCRNASTVY
                     PLADIKEDLEVELDALCRLRFTHDELGYLRSLRFIKSDFVDYLELFQLQRRFVEVGTD
                     DKGRLNIRIEGPMIQAMFFEIFILAIVNELYFRRLETPAVIEEGERRLQAKAARLKEI
                     AAAQNPDDPPFLISDFGTRRRYKLAWQEHVIRTLLEAAPSIVRGTSNVFLAKKLGITP
                     IGTMAHEFLQAFQALDVRLRNFQKAALESWVHEYRGDLGVALTDVVGMDAFLRDFDLY
                     FAKLFDGLRHDSGDPYVWGDKAYAHYQKLKIDSRTKMLTFSDGLDIERSWALHQYFKD
                     RFKTGFGIGTNLTNDMGHTPLNIVLKLVECNGQSVAKLSDSPGKTMTNNSTFLAYLRQ
                     VFDVPEPETP"
     gene            6904..8622
                     /gene="argS"
                     /locus_tag="WHR98_001012"
     CDS             6904..8622
                     /gene="argS"
                     /locus_tag="WHR98_001012"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEZ2307702.1"
                     /translation="MNLHQTVEREAAAAFAAAGIAGSPVVLQPTKNAEHGDFQINGVM
                     GAAKKAKQNPRELAQKVAEALAGNAVIESAEVAGPGFINLRLRPEFLAQNIQTALNDA
                     RFGVAKTDKPQTVVIDYSSPNLAKEMHVGHLRSSIIGDSISRVSEFMGNTVIRQNHVG
                     DWGTQFGMLVAYLVEQQKDNAAFELADLEQFYRAAKVRFDEDPAFADTAREYVVKLQG
                     GDETVLALWKQFVDISLSHAQAVYDTLGLKLRPEDVAGESKYNDDLQAVVDDLVQKGL
                     AVEDDGAKVVFLDEFKNKEGEPAAFIVQKQGGGFLYASTDLACLRYRVGTLHADRLLY
                     VVDHRQALHFEQLFTTSRKAGYLPENVGAAFVGFGTMMGKDGKPFKTRSGDTVKLVDL
                     LTEAVERATALVKEKNPELGADEAAKIGKTVGIGAVKYADLSKNRTSDYVFDWDAMLS
                     FEGNTAPYLQYAYTRVQSVFRKAGEWDADAPTVLTEPLEKQLAAELLKFEDVLQSVAD
                     TAYPHYLAAYLYQIATLFSRFYEACPILKAEGASRNSRLQLAKLTGDTLKQGLDLLGI
                     DVLDVM"
     gene            9162..10580
                     /locus_tag="WHR98_001013"
     CDS             9162..10580
                     /locus_tag="WHR98_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEZ2307703.1"
                     /translation="MNIHTLLSKQWTLPPFLPKRLLLSLLILLAPNAMFWVLALLTAT
                     ARPIVNLDYLPAALLIALPWRFVKITGVLAFWLAVLFDGLMMVIQLFPFMDLIGAINL
                     VPFILTAPTPYQIMTGLLLLYMLAMPFVLQKAAAKTDFRHIAVCAAIVAAAGYFTGHL
                     SYYDRGRMANIFGANNFYYAKSQAMLYTVSQNADFITAGLVDPVFLPLGNQQRAATHL
                     NEPKSQKILFIVAESWGLPANPELQNATFAKLLAQKDRFSVWESGSFPFIGATVEGEM
                     RELCAYGGLRGFALRRAPDEKFARCLPNRLKQEGYATFAMHGAGSSLYDRFSWYPRAG
                     FQEIKTAENLIGKKTCAIFGGVCDSELFGEVSAFFKKHDKGLFYWMTLTSHADYPESD
                     IFNHRLKCTEYGLPAETDLCRNFSLHTQFFDQLADLIQRPEMKGVEVIIVGDHPPPVG
                     NLNETFRYLKQGHVAWLNFKIK"
BASE COUNT         2543 a         3028 c         2621 g         2489 t
ORIGIN      
        1 gttccgtact atttgtactg tctgcggctt cgtcgccttg tcctgatttt tgttaatcca
       61 ctataaattt aatccactat attttttgtt ccaaagtcaa aatatgccgt ccgaacattc
      121 gggcggcaga caaaacggca ctgcccgata aaggcagtgc cgttgtccgt ttcaaaccgt
      181 gaaacatcag cccaaattaa aggctttatg caataccctg gttgccagtt ccatgtattt
      241 ttcatcaatc aatacggaaa ctttgatttc ggaggtggaa atcatttgga tgttgatacc
      301 ctcttcggcg agcgtgcgga agattttggc ggctacaccg acgtgcgaac gcatacccaa
      361 accgactgca gagactttgc atacggtgtc gtcgccatca atagaaaccg cgccgatact
      421 gtcttggcgt tccgacagga tttccaaagt ctgcttgtaa tcgccgcgcg gtacggtaaa
      481 ggaaaaatcg gttgtgcctt cgctgccgac attttggata atcatatcga cttcgatgtt
      541 ggcatcggca accgcgccta aaatctgata ggcgacaccg ggtttgtcgg gtacgccgcg
      601 cacgttgatg cgggcttggt ttttatcgaa tgcgataccg gttacggcag ctctttccat
      661 gttgtcgtcc tcttcaaagg taattaaggt gccattgccg ccgtcttgca ggctgctcag
      721 tacgcgcagg cgcactttgt attttccggc gaattctact gaacggattt gcaaaacttt
      781 cgaaccgagg cttgccagtt cgatcatttc ttcaaatgta accgtatcca tgcggcgcgc
      841 ttcgggtacg acgcgggggt cggttgtgta aacgccgtct acgtcggtat agatttggca
      901 ctcgtcggct ttgagggctg cggcaagcgc aacggcggaa gtgtcggaac cgccgcgtcc
      961 gagcgtggaa atatcgcctt cactgctgat gccttggaag ccggcaacga tgacgacttt
     1021 gcctgcatcg aggtcggcac gcattttttc gtcatcaatg ctttcgatgc gggctttggt
     1081 gtgggcggta tcggttttga gggcgacctg ccagcctgtg tagcttttgg catccacgcc
     1141 gatgtctttc aatgccatcg ccaaaaggcc gatggttact tgttcgccgg tggacaaaac
     1201 cacgtccaat tcgcgcggat cgggatgctc ctgcatttcg tgcgccaacg cgaccaggcg
     1261 gttggtttca ccgctcatgg cggatacgac gacgacgatg tcgtgtcctt cggcgcgggc
     1321 tttggcgaca cgtttggcca cgtttttaat gcgttcgggc gagcctacgg atgtgccgcc
     1381 gtatttgtgt acgattaacg ccatgtttcg tgctttcttg tgtgggattg gtcgggcagc
     1441 atggtttgct ggaaaagcgg ctattattac tattttttac atgaagttca agaacggact
     1501 gcgctttccc acctgccgtt tgacagcggt cagcaaaaaa cctgttcttt cagattgttg
     1561 acaaaatgcc gtctgaacgg ttttcagacg gcatccggac gacaatcagg cggcagacag
     1621 cgcattttgc tggtgttgca gcagttcgcc tatgcctttt tgcgccagtg caaccagttt
     1681 gcccaattcg tccaaactga acggcgcgtc ttccgccgta ccttggattt cgatgatttt
     1741 tcccgatgcg gtcatgacga tattcacatc actgtcgcaa ccggagtctt cgggataatc
     1801 caaatccaaa agcggcacgc cgttcactac gcctactgac acagcggcaa cggcttcgcg
     1861 gatggggttt tcactcaaaa tgccgtctga aaccagtttg ccgacggcga tttgcagcgc
     1921 gacaaacgca ccggtaatcg aagccgtgcg cgtaccgcca tctgcctgaa tcacatcgca
     1981 gtcaatcaag atttgtcgtt cgccgagttt ttccatatcc acgaccgcgc gtagcgaacg
     2041 cccgataagg cgttggattt cttgtgtgcg cccggactgt ttgcccgccg aagcttcgcg
     2101 gcgcatacgc gaagcggtgg atgcaggcag catcccgtat tctgcggtta cccagccttg
     2161 gtttttgccg cgcaaaaacg gtgggacatt ttcgtctatg gaagcggtac aaatcacttt
     2221 ggtattaccg cattcaataa ggcacgaacc gtcggcgtgc ggcaggaaat gaggggtgat
     2281 tttgatatcg cgcaggctgt cggcggcgcg cgagatgcgg atgtaatcag gcatactgcc
     2341 ctcccgttaa aaacagataa attaaaaagc cttaaatatg aaaaatcaca tttaaggcct
     2401 tcaaactgaa aatttctacg cctcttcggc tttgctgcgg ataatcaaaa gcggcaggtg
     2461 gctttggcgc attaccgttt cggcaaaact gcccattaaa aggtgcatca gcccggtacg
     2521 tccgtgcgta cccaacacca gcaagtcggc accgttttca tcggcataat caaccaaatc
     2581 ctgcgccatt tcacgcgcac ccttattggc aaccagcagg tgtttgacgg tattttccac
     2641 acccagttcc cgggcggtgc gctcggcggc atccaaaact tcgttgcctt gcgcgacggc
     2701 ggcggcttcg tagctttcgt gttgcaaaaa ttcgggggcg agcgccatat attcggcagg
     2761 attggcaacg tgcaccaaag tcaggcgcgc gctgttgact cctgcaagct cggcggcatg
     2821 tttcagggca ttgatggacg tttcactgcc gtcaacggca acgaccagat gtttgtacat
     2881 atcgtattct ccttttgcac cgcctcgcgg tgccctcttg tcggatgggc gcagggacag
     2941 tttgcgccgt ttcattatag acccgccgtc gggctttata caacagccga acagcccgac
     3001 cgctttccag tataatatgc cgcttccgtg cagtcaggca ttttttgccg gctttcgttc
     3061 actttttgat ttgacgcaat cttgcaggat tcgaccatgt ccgacaacgc tttgacctct
     3121 tcgcgacgct tcggcggcat cgccagactc tacggagact ctgccttggc gcacttttca
     3181 caggcacacg tctgcgtagt cggcgtgggc ggtgtcggct cgtgggcgat cgaggctttg
     3241 gcgcggacgg gcatcggacg tttgactttg attgatttgg acaacgttgc cgaatcgaat
     3301 gtcaaccgcc agctgcacgc cctgaccgga gacttcggca aagcaaaagt taccgccttg
     3361 cgcgaacgcg tcgcccaaat caacccagga tgccaagtgt ttgaaattga agatttcgtt
     3421 accgaagaca atttgccgga atacttcgga aaaggttttg atttcgtcat cgacgcgatc
     3481 gaccaagtgc gcgtcaaagc agcaatggcg gcttattttg tggaacgcaa acaaccgttt
     3541 gtcctcagcg gcggcgcggg cggacaaaaa aatccggcgt taatccaaac cgccgatttg
     3601 agccgcgtaa cccacgatcc gctgcttgcc aacctgcgct acaccttgcg gaaacgctac
     3661 ggcttcagcc gcgatacgaa agccaaaatg cgcgtgccgt gcgtgttctc aaccgaaaac
     3721 atcacgccgc cgcaatcggg cgcggcgtgt tctaccgatg ccgctccgca aggcttgtcg
     3781 tgcgccggct acggtgcaag catgctcgtt accgcttcgt tcgggctata ttgcgcacag
     3841 gcggcggtgg aacacatcgc agacaaaaaa taagcaatgc cgtctgaaac aggattcaga
     3901 cggcatttga acatactatg gttatgattt aggacaacaa aggatacgga taagaaataa
     3961 cataaaatat atgattccta ataatatacc aagtatcgga gagctattta atggaattcg
     4021 ttaataattt agttattttt tcatttttat tactaatgct tattccgata ttttttgtag
     4081 tatatggtat ataccataag atacgttatc gcaaaatata tatcctaaga ataagtttta
     4141 cattattagt ggtaatactt tgcagtatgt attacatata ttgccgttat cttgaccaac
     4201 aaaaagtagc ttattattgc atagatgaac aatgtatttc tattgttcat ctatacaaag
     4261 attatggtat aaactctccc acatatgcga gaatttacgc aggaaaaata ttgtttagat
     4321 ttcaagtaag agctaaaaat tacgctgaat tacttatgga agatgatata tcaattagta
     4381 aaaaaatttt ggggaataaa tttatcattt atgggtcgct acctgtaata tacggtaatg
     4441 tagataatat tgaagtaaaa gaagctactg gttatataga tagagccagt actgattata
     4501 ttgtctcaag aaacttaaaa ttcagacatt tatattaatt aagaggtttt agcaagaccg
     4561 tattcacaac ctgctccttt tcaaaacatt tgcatttaaa agccgttata atgccgtctg
     4621 aacatctgcc cgaccacatt atgcgtgaat gtcggcagat tgttttcttt tgtaaactta
     4681 tattaaaatc cacttaccga ttcacgccat gccgcccatc cctgccccat ccgcaccatc
     4741 cgagcacact gtcgcatggg tattcggcca acccgttacc gatttgccgc aggatttgtt
     4801 tatcccgccc gacgcgctga aagttgtatt gggcagtttt caaggccctt tggatctact
     4861 gctgtatctg atccgcaagc agaacatcga tgttctcgat attccgatgg tgaagattac
     4921 cgagcagtat ctgcactaca tcgcccaaat agaaacctat cagtttgatt tggcggcgga
     4981 atatcttttg atggcagcaa tgctgattga aatcaaatcg cgcctgctgc tgccgcgtac
     5041 cgaaaccgtc gaagacgaag aagccgaccc gcgtgccgag ttggtgcgcc gcctgctggc
     5101 ttacgaacag atgaagctgg cggcgcaggg tttggacgcg ctgccccgag ccggacggga
     5161 tttcgcgtgg gcttacctgc cgctggaaat tgccgtcgaa gccaagctgc ccgaagtcta
     5221 tattaccgac ttgacgcaag cgtggctggg tattttgtct cgggcaaaac atacgcgcag
     5281 ccacgaagtt atcaaagaaa ccatctccgt gcgcgcgcaa atgacggcaa tcctgcgccg
     5341 tttgaacaaa cacgggatat gcaggtttca cgacctgttc aatcccgaac agggcgcggc
     5401 ttacgtggtc gtcaacttca tctcactgtt ggagcttgcc aaagaaggat tggtcagaat
     5461 cgtgcaggaa gtcggtttcg gagaaattcg aatcagcctc aatcatgagg gggcgcattc
     5521 agacggcatt tccggcacac ggggcgggcg cgatgtgttc taatacgccc caagccgcca
     5581 ccaaaaatcg ggagacacgc catatgaccg gcatcataca ttcgctgctt gacaccgacc
     5641 tctacaaatt cactatgctg caagtagtcc tgcaccagtt tccgcagacg cacagccttt
     5701 acgaattccg ctgccgcaac gcctcgaccg tctatccgct tgccgacatc aaagaagact
     5761 tggaagtcga actcgacgcg ctctgccggc tgcgcttcac ccacgacgaa ctcggctatc
     5821 tgcgctccct gcgtttcatc aaaagcgact ttgtcgatta tctcgaactc ttccagctcc
     5881 aacgccgctt tgtcgaagtc ggcacagacg ataaaggccg tctgaacatc cgcatcgaag
     5941 gtccgatgat acaggcgatg ttctttgaaa tcttcatcct cgccattgtc aacgaacttt
     6001 acttccgccg cctggaaacc cctgcagtca tagaagaagg cgaacgccgc cttcaagcca
     6061 aagccgcgcg cctcaaagaa atcgccgccg cacaaaaccc cgacgatccg cccttcctga
     6121 tttccgactt cggcacgcgc cgccgctaca agctcgcgtg gcaggaacac gtcatccgca
     6181 ccctgctcga agccgcccca agcatcgtgc gcggcaccag caatgtcttt ctcgccaaaa
     6241 aactcggcat tacccccatc ggcaccatgg cgcacgaatt cctccaagcc ttccaggccc
     6301 tcgacgtacg cctgcggaat ttccaaaagg ccgcgctcga aagctgggtg cacgaatacc
     6361 ggggcgattt gggcgttgcc ctgaccgacg tggtcggtat ggatgccttc ctgcgcgatt
     6421 tcgacctcta tttcgccaaa cttttcgacg ggctgcgcca cgacagcggc gacccttacg
     6481 tttggggcga caaagcctac gcccactatc aaaagctcaa aatcgacagc cgcaccaaaa
     6541 tgctgacctt ctccgacggg ctggacatcg aacgctcttg ggcattacac caatatttca
     6601 aagaccgctt caaaaccggc ttcggcatcg gcaccaacct caccaacgat atggggcata
     6661 cgcccttgaa tatcgtctta aaactggtcg aatgcaacgg gcagtccgtc gccaagctgt
     6721 ccgactctcc gggcaaaacc atgaccaaca acagcacctt cctcgcctac ctgcgccaag
     6781 tgttcgacgt acccgaaccc gaaacgccgt aaaccggcag aaaaagcgca caattcctgt
     6841 ttctgccgca taaaatcttt taaaataccg cctgatttga atttaaccga aagaccgaac
     6901 ttcatgaacc tacatcaaac cgtcgaacgc gaagccgccg ccgcctttgc cgccgcaggc
     6961 atcgccggca gccccgttgt cttgcagccg accaaaaatg ccgaacacgg cgatttccaa
     7021 atcaacggcg tgatgggtgc ggcaaaaaaa gccaaacaaa acccgcgcga attggcgcaa
     7081 aaagttgccg aagcattggc gggcaacgcc gtcatcgaaa gcgcggaagt cgccggcccg
     7141 ggctttatca acctgcgcct gcgccccgaa tttctcgcgc aaaacattca gacggccttg
     7201 aacgacgcgc gtttcggcgt ggcaaaaacc gacaaaccgc aaaccgtcgt tatcgactat
     7261 tcctcgccca atctggcaaa agaaatgcac gtcggccatc tgcgttccag catcatcggc
     7321 gacagcattt cgcgcgtgtc agaatttatg ggcaataccg ttatccgtca aaaccacgtc
     7381 ggcgactggg gtacgcagtt cggcatgttg gtcgcttatt tggtcgagca gcaaaaagac
     7441 aatgccgcgt tcgagctggc ggatttggag cagttttacc gcgccgccaa agtgcgcttt
     7501 gacgaagacc ctgcctttgc cgacaccgca cgcgaatacg ttgtgaagct gcaaggcggc
     7561 gatgaaaccg ttttggcatt gtggaaacag tttgtcgata tttcgctctc gcacgcccaa
     7621 gccgtttacg acacgctggg cttgaagctg cgccctgaag acgtggcagg cgaatcgaaa
     7681 tacaacgacg atttgcaagc cgtggtcgat gatttggttc aaaaaggtct ggcagtcgaa
     7741 gacgacggcg cgaaagtcgt gttcttggac gagtttaaaa acaaagaagg cgaacccgcc
     7801 gcatttatcg tgcaaaaaca aggcggcggc ttcctttatg cttccaccga tttggcgtgt
     7861 ctgcgctacc gtgtcggcac gcttcatgcc gaccgcctgc tgtacgtcgt cgaccaccgc
     7921 caagccctgc actttgagca actctttacc acttcacgca aagccggcta tctgccggaa
     7981 aacgtcggcg cggcatttgt cggcttcggc acgatgatgg gcaaagacgg caaaccgttc
     8041 aaaacacgca gcggcgacac cgtgaaactg gtcgatctgc tgaccgaagc cgtcgaacgc
     8101 gccaccgctt tggtgaaaga aaaaaatccc gaattgggtg cagacgaagc ggcaaaaata
     8161 ggcaaaaccg tcggcatcgg cgcggtcaaa tacgccgact tgagcaaaaa ccgcaccagc
     8221 gattatgtgt tcgactggga cgccatgctc tcgtttgaag gcaacaccgc cccctatctg
     8281 caatacgcct acacccgcgt gcaaagcgtg ttccgcaaag caggcgaatg ggacgcggac
     8341 gcgccaaccg ttttgaccga acctttggaa aaacaactgg ccgccgagct tttgaaattt
     8401 gaagacgtac tgcaaagcgt ggcggacacg gcgtatccgc actacctcgc cgcctacctc
     8461 tatcaaattg cgaccctgtt cagccgcttc tacgaagcct gtccgatact caaagccgaa
     8521 ggcgcaagcc gcaacagccg cctgcaactg gcaaaactca ccggcgacac gctgaaacaa
     8581 ggcttggatt tgctgggcat cgatgtgttg gacgtaatgt aaaaccgcac cgcccgattg
     8641 cggacaacag cctcgccatc cttatccgaa tctgaaaaaa gcggcgcgat acaccgtatc
     8701 cgccgcccct cccaaaatgc gaaacaaaca aacgccaagc aagcaagcaa gcaagcaagc
     8761 aagcaagcaa aaaattataa cccccttcct gccgacgcac gcactttccg cgcggcgcat
     8821 tccccttttc ccgcccctca aacccgcctt ttcttcaggc agggtttcag cccgcctcct
     8881 ttccctgttt tcctttcccc gacacgcgtg cgcaccccct gccacaccgt gccacacttt
     8941 cgcgcccgga cggcatcggt ctgtcatccg gttctctgtt ttaaataccc ctgtttcaga
     9001 aagaaatgca gatgtttcaa cacacaggac gacatataaa gcaccgccct atgtgttgcc
     9061 ctgatttgaa aggggttgcg ctcctcccaa ataaagtctg atcctgccgc cccgaaggac
     9121 agatgtccga gtggcgaagt ttcaaccgaa aaggaaatac gatgaatatt cacaccctgc
     9181 tctccaaaca atggacgctg ccgccatttc tgccgaaacg gctgctgctg tccctgctga
     9241 tactgctggc tcccaatgcg atgttttggg ttttggcact gctgaccgcc accgcccgcc
     9301 cgattgtcaa tttggactac cttcccgccg cactgctgat cgccctgcct tggcgtttcg
     9361 tcaaaattac cggcgtattg gcgttttggc tggcggtttt gtttgacggg ctgatgatgg
     9421 tgatccagct tttccctttt atggacctca tcggcgccat caacctcgtc cccttcatcc
     9481 tgaccgcccc caccccttat cagataatga ccgggctgtt gctgctgtat atgctggcga
     9541 tgccgtttgt gttgcagaaa gccgccgcca aaaccgactt ccggcacatt gccgtctgcg
     9601 ccgccattgt ggcggcagcc ggctatttca ccggccattt gagttactac gaccgggggc
     9661 ggatggccaa tatcttcggc gcaaacaact tctattacgc caaaagtcag gcgatgctct
     9721 acaccgttag ccagaatgcc gactttatta ccgccggcct ggtcgatccc gtcttcctcc
     9781 ccttgggcaa tcagcagcgt gccgccacgc atctgaacga gccgaaatct caaaaaatcc
     9841 tctttatcgt cgccgaatct tgggggctgc cggccaatcc cgaacttcaa aacgccactt
     9901 ttgccaaact gctggcgcaa aaagaccgtt tttcggtttg ggaaagcggc agttttccct
     9961 tcatcggcgc gacggtcgaa ggcgaaatgc gcgaattgtg cgcctacggc ggtttgcgcg
    10021 ggttcgcact gcgccgcgcg cccgacgaaa aatttgcccg ctgcctcccc aaccgtttga
    10081 aacaagaagg ttatgccacc tttgcgatgc acggcgcggg cagttcgctt tacgaccgct
    10141 tcagctggta tccgagggcg ggctttcaag aaatcaaaac cgccgaaaac ctgatcggta
    10201 aaaaaacctg tgccattttc ggcggcgtgt gcgacagcga gctgttcggc gaagtgtcgg
    10261 catttttcaa aaaacacgac aagggactgt tttactggat gacgctgacc agccacgccg
    10321 actatcccga atccgacatt ttcaaccaca ggctcaaatg caccgaatac ggcctacccg
    10381 ccgaaaccga cctctgccgc aacttcagcc tgcacaccca attcttcgac caactggcgg
    10441 atttaatcca acgccccgaa atgaaaggcg tggaagtcat catcgtcggc gaccatccgc
    10501 cgcccgtcgg caacctcaat gaaaccttcc gctacctcaa acaggggcac gtcgcctggc
    10561 tgaacttcaa aatcaaataa caacaatgcc gtctgaacgc accaacagcc ttcagacggc
    10621 attttgcaga cagaccgacc cttcaagccc acttttttca tcatctccga taaattgctt
    10681 t
//
LOCUS       DAWGNT010000056        10397 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.056, whole genome shotgun sequence.
ACCESSION   DAWGNT010000056 DAWGNT010000000
VERSION     DAWGNT010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10397
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.056"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(231..1028)
                     /locus_tag="WHR98_001014"
     CDS             complement(231..1028)
                     /locus_tag="WHR98_001014"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEZ2307704.1"
                     /translation="MNRLYPHPIIAREGWPIIGGGLALSLLVSMCCGWWSLPFWVFTV
                     FALQFFRDPAREIPQNPEAVLSPVDGRIVVVERARDPYRDVDALKISIFMNVFNVHSQ
                     KSPADCTVTKVVYNKGKFVNADLDKASTENERNAVLATTASGREITFVQVAGLVARRI
                     LCYTQAGAKLSRGERYGFIRFGSRVDMYLPVDAQAQVAIGDKVTGVSTVLARLPLTAP
                     QIESEPESEPALQAAPVETAANPSAEQRQIEAAAAKIQAAVQDVLKD"
     gene            1183..4032
                     /gene="uvrA"
                     /locus_tag="WHR98_001015"
     CDS             1183..4032
                     /gene="uvrA"
                     /locus_tag="WHR98_001015"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEZ2307705.1"
                     /translation="MCNHHPQHSHDNDTIRIRGARTHNLKNIDLDIPRHKLVVVTGLS
                     GSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMDKPDVDLIEGLSPAISIEQKSTS
                     HNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHKLPLSSQTVSQMVDAVLKLPEDTRVM
                     ILAPTVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRV
                     KVKADIKQRLAESFETALRHGNERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRL
                     FSFNNPMGSCPTCDGLGNTNFFDPEKVVAHPELSLATGAIDGWDKRNQFYFQMIQSLA
                     RHYGFDVQAAWETLPEKVKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLER
                     RYRETDSETVREKLREYQNHRACPSCGGARLRKEARYVYVSGEPLHEVSAWPLTKTHQ
                     FFETLDLDGNKKQIAEKILKEITERLGFLINVGLDYLNLSRSAETLSGGEAQRIRLAS
                     QIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRDLGNSVIVVEHDEDAIREADFV
                     VDMGPGAGEHGGNVLIADTPENVAQCENSVTGQYLSGKKSIAVPSERTPVNPDRMLVL
                     KGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYD
                     DIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFASVPLSRERGYNVGRFS
                     FNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLD
                     MTVEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRD
                     TGRTLYILDEPTTGLHFADIALLLEVIGRLKGKGNSIVIIEHNLDVIKTADWIVDLGP
                     EGGDGGGRIIACGSPEQVAKVKGSYTGKYLKVVLR"
     gene            4066..5661
                     /locus_tag="WHR98_001016"
     CDS             4066..5661
                     /locus_tag="WHR98_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="funZ protein"
                     /protein_id="HEZ2307706.1"
                     /translation="MKPLKTLEFGFVDAANYRRRENKDLFNRIFVKGEYLDELCEPNI
                     SFLIGEKGTGKTAYAVYLTNNFYKNIHATTKFVRETDYSKFIQLKKARHLTVSDFTSI
                     WKVILYLLISNQIKCKENGILSSIFNKFKALDEAINEYYYGAFDPEIVQAITLIENSK
                     EAAEMIFGKFVKLGEEESQQITFTESKFQANLGFIERKFKDALSQLKLKDNHILFIDG
                     IDIRPSQIPFDEYHECVKGLANAIWMLNNDIFPSIKDSKGRMRVVLLIRPDIFDSLGL
                     QNQNTKLQDNSVFLDWRTDYKSYRSSKIFGVFDHLLRTQQEKQDSLEKGNSWDYYFPW
                     NAPNLHDEYKNLTSFISFLRKSYYRPRDILQMLTLLQKNKKSKEDYVVAEDFDNTSFQ
                     REYSIYLLGEIKDHLLFYYSQSDYQNFLKFFEFLNGKDRFKYSDFLKAFERLKKHLQT
                     TSVEIPKFMSTANEFLQFLFDLNVIAYLDNPEDETKPYIHWCFKDRNYANISPKIKTE
                     TEYLIFSGLSKALDVGTPFKNKQ"
     gene            complement(5968..6183)
                     /locus_tag="WHR98_001017"
     CDS             complement(5968..6183)
                     /locus_tag="WHR98_001017"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307707.1"
                     /translation="MPSETGNRVSDGILFVISKRGSLNIPTLFFPFWGSQRPLQNSPK
                     SPKFPPRHLGDFGEFCKGLGLSVPVCA"
     gene            complement(6212..7102)
                     /gene="sucD"
                     /locus_tag="WHR98_001018"
     CDS             complement(6212..7102)
                     /gene="sucD"
                     /locus_tag="WHR98_001018"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016655272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEZ2307708.1"
                     /translation="MSVLINKDTKVLVQGFTGKNGTFHSEQALAYGTKVVGGVTPGKG
                     GQTHLNLPVFNTMKEAVKETGADASVIYVPAPFVLDSIVEAVDSGVGLVVVITEGVPT
                     LDMLKAKRYLETNGNGTRLVGPNCPGVITPGECKIGIMPGHIHTPGRIGIISRSGTLT
                     YEAVAQTTKLGLGQSTCIGIGGDPIPGMNQIDALKLFQEDPDTDAIIMIGEIGGTAEE
                     EAAEYIQSNVTKPVVGYIAGVTAPKGKRMGHAGAIISGGKGTAEEKFAAFEKAGIAYT
                     RSPAELGTTMLEVLKAKGLA"
     gene            complement(7113..8279)
                     /gene="sucC"
                     /locus_tag="WHR98_001019"
     CDS             complement(7113..8279)
                     /gene="sucC"
                     /locus_tag="WHR98_001019"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEZ2307709.1"
                     /translation="MNLHEYQAKELLASYGLPVQGGILAHNGEEAAAAYDKLGGKFAV
                     VKAQVHAGGRGKAGGVKVVKSREEAKEVAESLIGTNLVTYQTDANGQPVNSVLVCEDM
                     YPVQTELYLGAVVDRSTRRVTFMASTEGGVEIEKVAAETPEKIFKVTVDPLVGLQPCQ
                     AREVAFQLGLKDKQINEFVKLMTGAYKAFVENDFALFEVNPLAVRENGALACVDGKIG
                     IDSNALYRLPKIAELRDKSQENERELKASEFDLNYVALEGNIGCMVNGAGLAMATMDI
                     IKLKGGQPANFLDVGGGATKDRVVEAFKLILEDKSVKGVLINIFGGIVRCDMIAEAIV
                     AAVKEINVDVPVVVRLEGNNAELGAKILNESGLKLTSADGLNDAAEKIVAAVNA"
     gene            complement(8378..8665)
                     /locus_tag="WHR98_001020"
     CDS             complement(8378..8665)
                     /locus_tag="WHR98_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307710.1"
                     /translation="MNKEIVGIFFIPAGIISMCMAALWQMYVMMTETYTLNRFKDKEL
                     VWRVALLFISFSLAVYLLCPNSRKKGIVFFILGGGGAAMYLLARMWLPFSK"
     gene            complement(8760..10193)
                     /gene="lpdA"
                     /locus_tag="WHR98_001021"
     CDS             complement(8760..10193)
                     /gene="lpdA"
                     /locus_tag="WHR98_001021"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003745605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEZ2307711.1"
                     /translation="MSQYDVVVIGAGPGGYVAAIRAAQLGFKTACVDAGVNKAGNAPA
                     LGGTCLNVGCIPSKALLQSSEHFHAAQHEFAEHGITVGDVKFDVAKMIERKDAIVTKL
                     TGGVKFLFQKNKVTSLFGTASFAGKNSDAYQIEVDNKGEKTVIEAKHVIVATGSVPRP
                     LPQVAIDNVNVLDNEGALNLTEVPAKLGVIGSGVIGLEMGSVWNRVGAEVTILEAAPT
                     FLAAADQQIAKEAFKYFTKEQGLSIELGVKIGDIKSEGKGVSVAYETAAGEAKTEVFD
                     KLIVAIGRIPNTKGLNAEAVGLEKDERGFIKVDGECRTNLPNVWAIGDVVRGPMLAHK
                     ASDEGVAVAERIAGQKPHIDFNNVPFVIYTDPEIAWVGKTEEQLKAEGVEYKKGTSGF
                     GANGRALAMGKAKGTVKVLADAKTDRILGVHMIGPVVSELVTEGVTALEFFASSEDIA
                     RIIHAHPTLSEVVHEAALAADKRALHG"
BASE COUNT         2716 a         2639 c         2398 g         2644 t
ORIGIN      
        1 aaaggtttct gttttttaag ttttaagtaa ctaatgagtt gtcattcccg cgcagacggg
       61 aatccaattc gttcggtttc agccgtttcc gataaatcgc tgtaacgtta agttcccgga
      121 ttcccatttt cgtgaacata acggtgtgaa cattagcaaa aattcaaaaa accaaacttc
      181 ctcattcgtg tgaatgatgg tactgatatt ttctatttta gttcgcaaaa ttaatctttc
      241 aacacatctt gcacagccgc ttgaatctta gccgccgctg cctcgatttg ccgttgttcg
      301 gcagatgggt ttgccgctgt ttcaaccgga gcagcttgta aagcaggctc agattcaggc
      361 tcggattcga tttgcggcgc agtcagcggc aaacgcgcca atacagtgct gacgccggta
      421 actttatcgc caatcgccac ttgcgcctgc gcatcgacag gcagatacat atccacgcgc
      481 gaaccgaagc ggataaagcc atagcgttcg ccgcgagaca gtttcgcacc tgcttgggtg
      541 tagcacaaaa tacggcgcgc caccaaaccg gccacttgaa caaaagtaat ttcacgacct
      601 gaagccgtag tcgccaacac cgcattacgt tcgttttccg tgctggcttt gtccaaatcc
      661 gcattcacga atttgccttt gttatagacc actttcgtta ccgtacaatc ggcaggcgat
      721 ttttgcgaat gcacgttgaa cacgttcata aaaatactga ttttcaaagc atcgacatca
      781 cgatacggat cgcgtgcgcg ctcgaccacc acgatacggc cgtcaaccgg actcaacact
      841 gcttcaggat tttgcggaat ctcacgcgca gggtcgcgga aaaactgcag ggcaaatacg
      901 gtaaacaccc aaaacggcaa agaccaccag ccgcaacaca tcgacaccag caggctcaaa
      961 gccaaaccgc cgccaataat cggccagccc tcacgggcga taatcgggtg ggggtaaaga
     1021 cggttcattt gtcatccttt tgttcaagcg ggttaaaatt gccgacatta tagcggaatc
     1081 tgccgtactc cgccgacaaa tgccgtctga acgcggcttc agacggcatc cgagaaagtg
     1141 ctacaatacc agttttcctt tatttttcag gcggcatcca ttatgtgcaa ccatcatccc
     1201 caacattcgc acgacaacga caccatccgc atccgcggcg cgcgcacgca taatttgaaa
     1261 aacatcgatt tagacattcc gcgccacaaa ctcgtggtgg taacaggatt gtcgggcagc
     1321 ggcaagtcgt cgctggcgtt tgacacgctg tatgccgaag ggcaacggcg ttatgtcgag
     1381 agcctttccg cctatgcgcg gcagtttttg cagatgatgg acaaacccga tgtcgattta
     1441 attgaaggtc tgtcgcctgc aatttccatc gagcaaaaat ccaccagcca caacccacgc
     1501 tccaccgtcg gtacggtaac tgaaatccac gactatctgc gtcttttata cgcccgtgtc
     1561 ggtaccccgt attgtcccga acacaagctg ccgctgtcga gccaaaccgt atcgcagatg
     1621 gtcgatgccg tattgaaact gccggaagac acgcgtgtga tgattcttgc ccccaccgtg
     1681 cgcgagcgta agggcgagtt tgtcgatttc tttgccgact tgcaggcgca gggttttgcg
     1741 cgggtgcgcg tggacggcga ggtctatcag cttgacgaag tgccgaagct ggaaaaaaac
     1801 atcaagcaca atatcgacgt ggtcatcgac cgcgtgaaag tgaaggcgga catcaagcag
     1861 cggctggcgg aaagttttga aaccgcgctg cgccacggca acgagcgtgc gctggcgatg
     1921 gagatggaca gcggcgaaga acattggttt tccgcacgtt tcgcctgccc cgtgtgttcg
     1981 tacagcctgc ccgaattaga gcctcgcctt ttttcgttca acaacccgat gggttcctgc
     2041 ccgacttgcg acggcttggg caacaccaat ttcttcgacc ccgaaaaagt ggtcgcccat
     2101 cccgaattgt cgctggcaac aggtgcgatt gacggttggg acaagcgcaa ccaattctat
     2161 ttccaaatga ttcaatcatt ggcgcggcat tacggtttcg atgtgcaggc tgcttgggaa
     2221 acactacctg aaaaagtgaa aaaagttgtg ctgcacggct caggcaaaga agtcattgat
     2281 ttcacttacc tgtccgaacg cggcaccacc ttcaaccgca gccacgcctt tgaaggcatc
     2341 atccccaatc tcgaacgccg ctaccgcgaa accgacagcg aaaccgtgcg cgaaaaactg
     2401 cgcgaatacc aaaaccaccg cgcctgccca agctgcggcg gcgcacgttt gcgcaaagaa
     2461 gcccgctacg tttacgtcag cggtgagccg ttgcacgaag tttccgcctg gccgctcacc
     2521 aaaacccacc aattctttga aacactggat ttagacggca acaaaaaaca aatcgccgaa
     2581 aaaatcctca aagaaatcac cgaacgcctc ggcttcctga ttaacgtcgg gctggattac
     2641 ctgaatttaa gccgctccgc cgaaaccctc tccggcggcg aagcccagcg catccgcctc
     2701 gccagccaaa tcggcagcgg cctgaccggc gtgatgtatg tactggacga accctccatc
     2761 ggcctgcacc agcgtgacaa tgaccgcctg ctggccaccc tcaaacgcct gcgcgatttg
     2821 ggcaacagcg tgattgtggt cgaacacgac gaagacgcca tccgcgaagc cgatttcgtg
     2881 gtcgatatgg gccccggcgc aggcgaacac ggcggcaacg tactgattgc cgacacgccc
     2941 gaaaacgtcg cccaatgcga aaactccgtt accggacaat acctcagcgg caaaaaatcc
     3001 attgccgtgc cgtctgaacg cacgcccgtc aatcccgacc ggatgctcgt cctcaaaggc
     3061 gcacgcggca acaatctcaa aaacgttacc cttgagctgc cgctcggttt gattacctgc
     3121 atcaccggcg tatccggcag cggcaaatcc accctgatta acgacaccct cgccaaaatt
     3181 accgcccgcg aactcaaccg cgcccaagaa gaacccgccc catacgacga catccgaggc
     3241 ctcgaacacc tcgacaaagt catcaacgtc gaccaatccc ccatcggccg caccccacgc
     3301 tccaatcccg ccacctacac cggcctgttc acccccatcc gcgaactctt cgccagcgta
     3361 cccctctcgc gtgaacgagg ctacaacgtc ggcagattct ccttcaacgt caaaggcggc
     3421 cgctgcgaag cctgccaagg cgacggcgtg attaaagtcg aaatgcactt cctgcccgac
     3481 gtgtacgtcc cctgcgaagt ctgccacggc aaacgctaca accgcgaaac gctcgaaatc
     3541 caatacaaag gcaaaaacat cagccaagtc ctcgacatga ccgtcgaaga agcccgcgaa
     3601 tttttcgacg ccgtccccac cgtatcgcgc aaactgcaaa ccctgatgga cgtaggtctc
     3661 ggctacatcc gcctcggcca atccgccacc accctctccg gcggcgaagc ccagcgcgtc
     3721 aaactcgcct tggaactctc caaacgcgac accggcagaa cactctacat cctcgacgaa
     3781 cccaccaccg gcctacactt cgccgacatc gccctgctgc tggaagtcat aggtcgtctg
     3841 aaaggcaaag gcaactcgat tgtgattatc gagcataatc tagacgtgat taaaaccgcc
     3901 gattggattg tggacttagg gccggaaggc ggcgatggcg ggggcaggat tattgcttgt
     3961 ggtagccctg agcaggtggc gaaagttaag gggagttata ctgggaagta tttgaaggtg
     4021 gttttgaggt aagtttaatt caaaattaaa taggagatta ttaagatgaa accgttaaaa
     4081 acattagaat ttggatttgt ggatgctgca aactacagaa gaagagaaaa taaagattta
     4141 tttaaccgaa tatttgtaaa aggagaatat ttggatgaat tatgtgaacc aaatatttcg
     4201 tttttaatcg gagaaaaggg aactggaaag acagcatatg ctgtttattt aactaataac
     4261 ttctataaaa acatacatgc cactactaag tttgttcgtg aaaccgatta ttcaaaattt
     4321 attcagctaa agaaagcaag acacttaact gtttcagatt ttacaagtat ttggaaagtc
     4381 attttatatc tgttgatatc aaatcaaatc aaatgtaaag aaaacggaat attatcttca
     4441 atatttaata aatttaaagc cttagatgag gctataaatg aatattatta tggcgctttt
     4501 gatccggaaa ttgtacaagc aataacttta atagaaaatt caaaagaagc tgcggaaatg
     4561 atttttggaa aatttgttaa actaggtgaa gaggaatccc aacaaataac ttttacagaa
     4621 agtaaattcc aagcaaattt aggttttatt gaaagaaaat ttaaagatgc tttatctcag
     4681 ttaaagctaa aagataatca tattttgttt attgatggga tagatattag accatcacag
     4741 attccatttg atgaatatca tgagtgtgta aaaggtcttg ctaacgccat atggatgtta
     4801 aataatgata tcttcccttc cattaaagat agtaagggaa ggatgagagt tgtgttattg
     4861 attagacctg atatctttga ttcattaggt ttacaaaatc aaaataccaa acttcaagat
     4921 aattcagtat ttttagactg gaggacggat tataaatctt atagaagttc aaagattttt
     4981 ggcgtttttg atcatctttt gagaacccag caagaaaaac aagatagttt agaaaaaggc
     5041 aactcatggg attattattt tccatggaat gctcctaatt tacatgatga gtataaaaat
     5101 ttaacttcat ttattagctt cctaagaaaa tcgtattatc gacctcgcga tattcttcag
     5161 atgcttactt tgctacaaaa aaataagaaa agtaaggaag attatgtcgt agcagaagat
     5221 tttgataata cttcttttca aagagaatac tcgatatatt tacttggtga aatcaaagat
     5281 catcttttgt tttattatag tcaaagtgat tatcaaaatt tcctgaaatt ttttgaattt
     5341 ttaaacggga aagatagatt taaatatagt gattttttaa aagcatttga acgtttgaaa
     5401 aagcacttac aaacaacatc agtggaaata cctaaattta tgagtactgc taatgagttt
     5461 ttgcaatttt tatttgactt gaatgttatt gcttatttag ataacccaga agatgaaacg
     5521 aaaccatata tccattggtg ctttaaagat agaaattatg caaatatttc tcctaaaata
     5581 aaaactgaaa ctgaatattt aatattttca ggattatcaa aagcccttga tgttggtact
     5641 ccatttaaga acaaacagta acttgtatcc caaccaaccg tgtgcgctac gcacacggtt
     5701 ggtagctgac gtgttgcagt ttcaacagag aaagccgtag cctgcatacc caaccgaccg
     5761 cgtgcgtggc tgtgccacac gccctacctg tgaattacac ggaacttcaa agccaatacg
     5821 agagctttgc aaaattcctt tccctcccga cagccgaaac ccaaacacag gttttcggct
     5881 gttttcgttt caaatatcca ctaattttac cccaataccc ccttaatcct cccaggatac
     5941 ccgataatca ggcatccggg ccgcctttta ggcgcaaaca ggcacactta gcccgagacc
     6001 tttgcaaaat tccccaaaat cccctaaatg tcttggtggg aatttagggg attttgggga
     6061 attttgcaaa ggtctctgac tgccccaaaa gggaaaaaat aatgtgggta tgttgaggct
     6121 gcctcttttt gaaatgacaa acaaaatgcc gtctgaaacc cgatttccgg tttcagacgg
     6181 catttgatgt ttaatcagtt gtcaaacctg attatgccaa accttttgcc ttcaacactt
     6241 ccagcatcgt cgtgcccaac tcggcagggc tgcgagtata ggcgataccg gctttttcga
     6301 aagcggcgaa tttttcttcg gcagtacctt taccgccgga aataatcgca ccggcgtggc
     6361 ccatacgttt gcctttagga gcggtaacac cagcaatgta acctacaaca ggtttggtta
     6421 cgttggattg gatgtattcg gctgcttctt cttccgcagt accgccgatt tcaccaatca
     6481 tgatgatggc gtcggtatct gggtcttctt ggaagagttt cagtgcgtcg atttggttca
     6541 taccaggaat cgggtcgccg ccgataccga tacaggttga ttgacccaag cccagtttgg
     6601 tggtttgtgc cacggcttcg taagtcaatg taccggaacg ggaaataata ccgatgcggc
     6661 ccggagtgtg gatgtggccc ggcataatgc cgattttgca ctcgcccgga gtaatcacgc
     6721 ccgggcagtt agggccgacc aagcgggtac cgttgccgtt ggtttccaag taacgtttgg
     6781 ctttgagcat gtccaaagta ggtacgcctt cggtaatcac aacgaccaag cctacgcctg
     6841 aatcaacggc ttcaacgata gaatccaaca caaacggagc gggaacgtaa attacggatg
     6901 catccgcgcc ggtttcttta acagcttctt tcatggtgtt gaatacaggc aggttcaggt
     6961 gggtttgacc gcctttgccc ggggtaacgc cgccgacaac tttagtgccg taagccagag
     7021 cttgttcgga gtggaaagta ccgtttttac cggtgaaacc ttgaaccaat actttggtgt
     7081 ctttattaat caatacgctc attcttttct ccttaggcgt ttacggctgc aacaattttt
     7141 tcggctgcgt cattcaggcc gtctgcagaa gtcagtttca ggcctgattc gttcaggatt
     7201 ttcgcgccga gttcggcgtt gttaccttcc aaacgaacaa cgacaggaac gtcgacgttg
     7261 atttctttaa cggctgccac gatggcttcc gcaatcatgt cgcaacgtac gataccgccg
     7321 aagatgttga tcaatacgcc tttaacggat ttgtcttcca aaatcagttt gaacgcttca
     7381 accacgcggt ctttggttgc gccgccgcca acgtccaaga agttggcagg ttgaccgcct
     7441 ttgagtttga tgatgtccat ggtggccatc gccaaaccgg caccgttaac catacagccg
     7501 atgttgcctt ccagggcaac atagttcagg tcgaattcag aagctttcag ttcacgttcg
     7561 ttttcttgag atttgtcgcg caattcagcg atttttggca ggcggtagag cgcgttgctg
     7621 tcgatgccga ttttgccgtc cacgcaagcc agtgcgccgt tttcgcgaac tgccagcggg
     7681 ttgacttcaa acagggcgaa gtcgttttcg acaaacgctt tgtacgcgcc ggtcatcagt
     7741 ttgacgaact cgttgatttg tttgtctttc aagcccagtt ggaaggcaac ttcgcgagct
     7801 tggcaaggtt gcaggccgac cagcggatca acggttactt tgaagatttt ttctggagtt
     7861 tcggcagcaa ctttttcgat ttccacaccg ccttcggtag aagccatgaa tgtaacgcgg
     7921 cgggtagaac ggtcaaccac tgcgcccaag tacagctcgg tttgaaccgg atacatatct
     7981 tcgcaaacca aaacgctgtt gacaggttga ccgttggcat cggtttggta agttaccaag
     8041 ttggtgccaa tcaggctttc agccacttct ttagcttctt cgcggctttt aacgactttt
     8101 acgccgcccg ctttaccgcg gccgccggcg tgtacttgtg ctttgacaac agcgaatttg
     8161 ccgcccaatt tgtcgtaagc tgcagcggct tcttcgccgt tgtgtgccaa aataccgcct
     8221 tgtacgggca aaccgtagct agccagcagt tctttagcct gatactcgtg taaattcatg
     8281 gatttctcct ttagattagt ggaatgcccc gagtttgcct ccaaatggca agcccgtgcg
     8341 tttcagacta cctttcggcg gtcggaaaat cgtcgtttca cttgctgaaa ggcaaccaca
     8401 tccgcgccag cagatacatg gctgcaccgc ctcccccgag aataaaaaag acgatgcctt
     8461 ttttacgcga attcggacag agcagataaa cggcaaggct gaaactgata aacaacaatg
     8521 ccacgcgcca aaccaattct ttatctttga aacggttgag cgtataagtt tcggtcatca
     8581 tcacatacat ctgccacaat gcggccatac acatgctgat gatgcccgcc ggtataaaga
     8641 aaataccgac tatttctttg ttcataatga atgtaaatgc tgtttgtttg tctgacggaa
     8701 ttataaatca gaaaacgaag ctctcggaac attcaatttg tcggaggcct taatgtctat
     8761 caaccgtgca aagcgcgttt gtcggccgcc aatgcagctt cgtgaaccac ttcggacaag
     8821 gttgggtggg catggataat gcgggcgatg tcttcgctgc tggcgaagaa ttcgagcgca
     8881 gtcacgcctt cggtaaccaa ttcgctgaca accggaccaa tcatgtgtac gcccaagatg
     8941 cggtcggttt tggcgtctgc caacacttta accgtacctt tggctttgcc cattgccaat
     9001 gcgcgaccat tcgcaccaaa acctgaagta ccttttttgt actccacgcc ttcggcttta
     9061 agctgttctt cggttttacc cacccaagcg atttcaggat cggtgtaaat aacaaacggt
     9121 acgttgttga aatcgatatg cggtttttga ccggcaatgc gctcggcaac ggcaacgcct
     9181 tcgtcgctgg ctttgtgtgc caacatcggg ccgcgaacca cgtcgccgat tgcccataca
     9241 ttaggcaggt tggtgcggca ttcgccatct actttgataa agccgcgctc atctttttcc
     9301 aagccgacgg cttcagcgtt caggcctttg gtgtttggaa tacggccgat ggcaacgatc
     9361 agtttgtcga atacttcggt tttggcttcg ccggcagcag tttcgtaagc aacggaaaca
     9421 cctttgcctt cagacttgat gtcgccgatt ttcacgccca attcgatgct cagaccttgc
     9481 tctttggtga agtatttgaa ggcttctttg gcgatttgtt ggtcggcggc agccaggaag
     9541 gtcggcgcgg cttcaagaat ggtaacttcc gcacccacgc ggttccatac ggaacccatt
     9601 tccaaaccaa tcacaccgga accgatcacg ccgagtttgg caggtacttc ggtcaggttc
     9661 aatgcgcctt cgttgtccaa tacgttcaca ttgtcgatag cgacttgtgg cagcggacgc
     9721 ggtacggaac cggtggctac gatgacgtgt ttggcttcga taacggtttt ctcacctttg
     9781 ttatcgactt cgatttggta agcatcgcta tttttgccgg caaaggaagc cgtaccgaac
     9841 aggctggtta ctttgttttt ctggaacagg aatttcacgc cgccggtcag tttggttacg
     9901 atggcatctt tgcgctcaat cattttggcc acgtcgaatt ttacgtcgcc gacagtgata
     9961 ccgtgttcgg caaactcgtg ttgcgctgcg tggaaatgtt cgctggattg caacagggct
    10021 ttagaaggga tacagcctac gttcaagcaa gtaccgccca atgcaggggc attgcctgct
    10081 ttgttaacgc ctgcatcgac acaggcagtt ttgaaaccca gttgtgcggc acggatggcg
    10141 gcaacgtatc cgcccgggcc tgcaccaatc actactacat catattgaga catcgtgtca
    10201 tcctttgctt ttagcagtat ctcaaaataa aaacgatact tttcgtttct tttttatttt
    10261 gaatgactgc gttttgatgg ttttaagaaa aagccgtctg aaagtccata tctgccgatt
    10321 cattcgaatc aaatgtttca gacggcctca atcgttcgtt gagcctattg tagcacgata
    10381 ctacattacg ctacatc
//
LOCUS       DAWGNT010000057        10280 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.057, whole genome shotgun sequence.
ACCESSION   DAWGNT010000057 DAWGNT010000000
VERSION     DAWGNT010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10280
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.057"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     repeat_region   29..988
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=29..64
                     /rpt_unit_seq="gttgtagctcccattctcatttcgcagtgctacaat"
     gene            complement(1052..1378)
                     /gene="cas2"
                     /locus_tag="WHR98_001022"
     CDS             complement(1052..1378)
                     /gene="cas2"
                     /locus_tag="WHR98_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEZ2307712.1"
                     /translation="MSEAKFMRIIVFFDLPVITAAKRKAANQFRQFLLKDGYQMLQLS
                     VYSRIVKGRDSLQKHHNRLCANLPQEGSIRCLEITEKQYAAMKLLLGELKTQEKKVNS
                     DQLLLF"
     gene            complement(1371..2285)
                     /gene="cas1"
                     /locus_tag="WHR98_001023"
     CDS             complement(1371..2285)
                     /gene="cas1"
                     /locus_tag="WHR98_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEZ2307713.1"
                     /translation="MTWRSLLIQNGGKLSLQRRQLLIQQNDESHTVPLEDIAVIIIEN
                     RETLITAPLLSALAEHGATLLTCDEQFLPCGQWLPYAQYHRQLKILKLQLNISEPLKK
                     QFWQHIVRQKILNQAFVADETGNDLAAKRLRTLASEVRSGDTGNREAQAAALYFQALF
                     GEKFTRNDNNAVNAALNYTYAVLRAAVARALTLYGWLPALGLFHRSELNPFNLADDFI
                     EPLRPLADLVVIHLYEQGRLKTELTPSIKQHLIKTLHCQTSIERQHFSTLAAIDKMVS
                     SFQAGVTDKNAKQLKLPEILPLKAYQYE"
     gene            complement(2351..5596)
                     /gene="cas9"
                     /locus_tag="WHR98_001024"
     CDS             complement(2351..5596)
                     /gene="cas9"
                     /locus_tag="WHR98_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742773.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEZ2307714.1"
                     /translation="MAAFKPNPINYILGLDIGIASVGWAMVEIDEDENPICLIDLGVR
                     VFERAEVPKTGDSLAAARRLARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGL
                     IKSLPNTPWQLRSAALDRKLTPLEWSAVLLHLIKHRGYLSQRKNEGETADKELGALLK
                     GVADNAHALQTGDFRTPAELALNKFEKESGHIRNRRGDYSHTFSRKDLQAELDLLFEK
                     QKEFGNPHISDDLKEGIETLLMTQRPALSGDAVQKMLGHCTFEPTEPKAAKNTYTAER
                     FVWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQARKLLELDDTAFFKG
                     LRYGKDNAEASTLMEMKAYHAISRALEKEGLKDKKSPLNLSPELQDEIGTAFSLFKTD
                     EDITGRLKDRVQPEILEVLLKHISFDKFVQISLKALRRIVPLMEQGKRYDEACAEIYG
                     DHDGKKNTEEKIYLPPIPADEIRNPVVLRALSQARKVINAVVRRYGSPARIHIETARE
                     VGKSFKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKC
                     LYSGKEINLGRLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFN
                     GKDNSREWQEFKARVETSRFPRSKKQRILLQKFDEEGFKERNLNDTRYVNRFLCQFVA
                     DHMLLTGKGKRRVFASNGQITNLLRGFWGLRKVRAENNRHHALDAVVVACSTVAMQQK
                     ITRFVRYKEMNAFDGKTIDKETGEVLHQKTHFPQPWEFFAQEVMIRVFGKPDGKPEFE
                     EADTPEKLRTLLAEKLSSRPEAVHEYVTPLFVSRAPNRKMSGQGHMETVKSAKRLDEG
                     VSVLRVPLTQLKLKDLEKMVNREREPKLYEALKARLEAHKDDPAKAFAEPFYKYDKAG
                     NRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKAGKYYLVPIYSWQVAKG
                     ILPDRAVVAYADEEGWTVIDESFRFKFVLYSNDLIKVQLKKDSFLGYFSGLDRATGAI
                     SLREHDLEKSKGKDGMHRIGVKTALSFQKYQIDEMGKEIRLCRLKKRPPVR"
     gene            complement(5880..9314)
                     /gene="dnaE"
                     /locus_tag="WHR98_001025"
     CDS             complement(5880..9314)
                     /gene="dnaE"
                     /locus_tag="WHR98_001025"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEZ2307715.1"
                     /translation="MTEPTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDL
                     MNEFGLVKFYKACRGAGIKPIGAADVWIGNPNAPDKPFRAMLIIRNDAGYLRLSELLT
                     AAYVGKDRNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKY
                     AAWFPDAFYLELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEA
                     RVCIAGGWVLTDKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITL
                     GKNFLPLFPTPDGLSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELN
                     IIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLF
                     ERFLNPERVSMPDFDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVG
                     RVLELPFMLCDKLSKLIPLEANKPLSLDDAMKAEPQIQELIEAEEADELITLAKKLED
                     LTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRN
                     LTIIEMAQNNIKNTTGDIVDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTA
                     HTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEFQYIHPLLEGILAPTYGIMVYQEQ
                     VMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNY
                     MEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCR
                     ANGIEFLPPDINESDYRFTPYPDMKIRYALGAIKGTGEAAVESITAARQSGGKFTGLL
                     DFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNADQKAANTNQGGL
                     FDMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGR
                     LKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVEIMVGGQTLENCADCLKADQ
                     VLIIESKVSRDDYGGGDGLRIMANQVMTLQTARERYARSLSLALAPHHDIGGLVRLLA
                     AHQLPDTPRIPLQLSYANGKASGRLQVPRKWTVTPSSALFGELETLLGSRSVRVNW"
     gene            9327..9560
                     /locus_tag="WHR98_001026"
     CDS             9327..9560
                     /locus_tag="WHR98_001026"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307716.1"
                     /translation="MNNKRRIVAGLSLDGGVGNAVSGSDGIACKWFFELLRRQKNASC
                     RMAEASQGVLIDIKDYQTSYKELYTLFGRMASS"
     gene            9848..10081
                     /locus_tag="WHR98_001027"
     CDS             9848..10081
                     /locus_tag="WHR98_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEZ2307717.1"
                     /translation="MEATVYLEDNEYIALCDLLKLAGLAESGGQAKALIAEGLVSRNG
                     ETETRKTAKIRGGEVIEFDGARLEIADGYDPEA"
     gene            10059..10262
                     /locus_tag="WHR98_001028"
     CDS             10059..10262
                     /locus_tag="WHR98_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307718.1"
                     /translation="MDTTLKHKAEALLGEPLLDEPVRPESWECCGSDCGDACIQTIYW
                     ADKARYDAQRRKLKEAGWSDDAV"
BASE COUNT         2187 a         2500 c         2739 g         2854 t
ORIGIN      
        1 acttagcacg tttaacttgc ttaacaaggt tgtagctccc attctcattt cgcagtgcta
       61 caatcaaaaa ctttttaggg gggtcgaaaa atacgttgta gctcccattc tcatttcgca
      121 gtgctacaat caaagctata aacacgttta tctgttgtta gttgtagctc ccattctcat
      181 ttcgcagtgc tacaatatgg ggtatgcaat tacatcgctt gggtttgttg tagctcccat
      241 tctcatttcg cagtgctaca ataaattata ccaatggcga aaatctcggg cggttgtagc
      301 tcccattctc atttcgcagt gctacaatgc tcagttggaa caatgaatac atcttgaagt
      361 tgtagctccc attctcattt cgcagtgcta caatataggt tctattaata cgtctttcgt
      421 cttcgttgta gctcccattc tcatttcgca gtgctacaat ttttccagcg cgatgagata
      481 cccggcatag gttgtagctc ccattctcat ttcgcagtgc tacaatcttt tgccgccatc
      541 gacgcagccg acaggggttg tagctcccat tctcatttcg cagtgctaca atacttaatt
      601 tattcagttc ttctttatgc cagttgtagc tcccattctc atttcgcagt gctacaatcg
      661 aagcaggaag acgaaatcaa acggcacggt tgtagctccc attctcattt cgcagtgcta
      721 caatcgttta aagacagata accggattcg cgttgttgta gctcccattc tcatttcgca
      781 gtgctacaat ccgcaaccgt ctgcaccgta aatgtaatca gttgtagctc ccattctcat
      841 ttcgcagtgc tacaatcatg gcggtcgtca tatgggggtt ccttcggttg tagctcccat
      901 tctcatttcg cagtgctaca atcgatgttg tgatcgcctt cctgcaggcg tagttgtagc
      961 tcccattctc atttcgcagt gctacaatac cccaacggga aatccttatt ctataaggat
     1021 ttcccgtttt atttagtctg aaaaaatggg cttaaaataa caataattgg tctgaattga
     1081 cctttttttc ttgggttttc agctcgccca acagcagttt catggcggca tattgctttt
     1141 ctgttatctc caaacagcgg attgagcctt cttgcggaag gtttgcacat agtctattgt
     1201 ggtgtttttg caacgaatcg cggcctttga cgatacggct gtatacggaa agttgcagca
     1261 tttggtatcc gtcttttaat aaaaactggc ggaattgatt ggcggctttg cgctttgccg
     1321 ccgtgataac cggtaggtcg aagaagacga taatcctcat aaatttggcc tcactcatat
     1381 tggtatgctt tcaatggtag gatttcaggc agtttcagtt gtttggcgtt tttatcggtt
     1441 acgccggctt gaaatgacga aaccattttg tcgatggcag ccaaggtgct gaaatgttgc
     1501 cgttcgatgc tggtttgaca gtgaagggtt ttgataaggt gttgtttgat gctgggcgtc
     1561 agttcagttt tcagacggcc ttgttcgtac aaatgtataa cgaccagatc ggccaatggg
     1621 cgtaagggtt cgataaagtc atcggcgaga ttgaatggat tcaactcact tctatgaaac
     1681 aagcctaatg caggcaacca accgtataag gtcagggcgc gtgcaactgc agcccggagc
     1741 acagcgtagg tatagttcaa tgcggcattg acggcgttgt tgtcattgcg ggtaaatttt
     1801 tcgccaaaga gggcttggaa gtagagggcg gcggcttggg cttcgcggtt tcctgtatcg
     1861 cccgagcgga cttcagatgc caaagtgcgc agccgtttgg ctgcaagatc attgccggtt
     1921 tcgtctgcga caaatgcttg attcaggatt ttttggcgga cgatatgttg ccagaattgc
     1981 ttttttaagg gttcgcttat gttcagttgc agcttgagga ttttaagttg gcggtgatat
     2041 tgggcataag gcagccattg tccgcagggc aggaactgct cgtcacatgt cagtaaggtt
     2101 gcgccatgtt cggctaaggc tgacagaagt ggagcggtaa tcagggtttc gcggttttcg
     2161 atgatgataa cggcgatgtc ttctaatggt acggtgtggg actcgtcatt ttgttgaatc
     2221 agcagttgcc ggcgttgcaa ggatagtttg ccgccgtttt gaatgagcag gctgcgccaa
     2281 gtcatgtttt ccccttattt tgatataaaa aatccctgct tcaggtcgtc tgaaacaggg
     2341 atagattaat ttaacggaca ggcgggcgtt ttttcagacg gcatagtctg atttctttgc
     2401 ccatttcgtc gatttggtat ttttgaaagg aaagggcggt tttaacgccg atacgatgca
     2461 taccgtcttt accttttgat ttttccaaat catgctcccg aagagaaatg gctccagtgg
     2521 ctcgatctaa tcctgaaaag taacctaaaa agctgtcttt tttaagttga actttaatta
     2581 aatcattcga ataaagtaca aatttaaatc tgaagctttc atctattaca gtccagccct
     2641 cttcatctgc ataagcaaca acagccctgt ccggtaaaat tcctttcgca acctgccaac
     2701 tgtaaattgg caccaaataa tatttgccag ctttttcaaa cacatctacg cgcaccatgg
     2761 ttgcgttgtc ggcaatgccg ttatggttgc gcacccatac gccggttttc tgtacttgct
     2821 ctacgcgcac ggcttttacc tgttgggtgc ggttgcctgc tttatcgtat ttgtaaaacg
     2881 gttcggcaaa ggctttggct gggtcgtctt tatgtgcttc caaacgtgct ttcagtgctt
     2941 cgtatagctt aggttcgcgc tcccgattga ccattttttc caagtctttc agttttaact
     3001 gtgttaacgg tacgcgcaac acgctgacgc cttcgtccag ccgtttggcg gatttgacgg
     3061 tttccatatg gccttgcccg ctcatcttcc gattgggcgc acgcgaaaca aacagtggcg
     3121 taacgtattc gtgcacggct tcgggacgag atgataattt ttctgcgagc agggtacgca
     3181 gtttttcggg ggtatccgct tcttcaaatt cgggtttccc gtccggtttg ccgaagacgc
     3241 gaatcatgac ttcttgtgcg aaaaattccc aaggttgcgg gaagtgtgtt ttttgatgca
     3301 gcacttctcc tgtttcttta tctatggttt taccgtcaaa cgcgttcatc tctttatagc
     3361 gtacaaaacg ggtaattttc tgctgcatgg caacggtcga gcaggcaacg acgacggcgt
     3421 ccaaggcgtg atggcggttg ttttccgcac gcactttgcg caatccccaa aagccgcgca
     3481 acagattggt aatttgtccg ttggatgcaa agacacgtct ttttcctttg cctgtcagca
     3541 gcatatggtc ggcaacgaat tggcacagga aacggttgac gtagcgcgta tcgttcagat
     3601 tgcgttcttt aaagccctct tcgtcgaatt tttgcagcag aatccgttgt tttttactgc
     3661 gtgggaaacg gctggtttcg acacgcgctt taaattcctg ccattcgcgg ctgttgtctt
     3721 tgccgttgaa gtattcgtaa ggggtttgat tgcctttgtt ttggttttcg ctgcccaata
     3781 ccagcacttt attgttgaaa ctgtcgtccc atgtgcgcga gaacggcagg gcatggtcga
     3841 tttcgacata gcctttttcg ttcagacggc ctaagttgat ttctttgccc gaatacaggc
     3901 atttgccgtg ttgttgctcg tacaggcgca gtttcagaat atctttggat ttgggttcgc
     3961 cgacaaaatt ggggaaatac tctcggaatt tggcggctgc tttttcccgg tctttacggt
     4021 tttcttcttg gcgtttttcg atttctttgc ggtctttaaa cgattttcct acttcccttg
     4081 ccgtttcaat atggatacgg gcaggggagc cgtaacggcg tacgacggcg ttaatgactt
     4141 ttctggcttg agataaggcg cgcaagacga cggggttgcg gatttcgtcg gcgggaatcg
     4201 gcggcagata aatcttttct tccgtattct tcttgccgtc atggtctccg tagatttcgg
     4261 cgcaggcttc atcgtaacgt ttgccttgct ccattagagg cacaattcgg cgcagtgctt
     4321 tcaaggaaat ttgaacgaac ttatcaaagc tgatgtgctt taacagcact tctaagattt
     4381 cgggctgtac acggtctttc agacggcctg taatgtcttc atcggttttg aacagggaga
     4441 atgccgtgcc gatttcgtct tgtaattcgg gagaaaggtt taatggggat tttttgtctt
     4501 tcaatccttc tttttccagt gcacggctga tggcatggta ggccttcatt tccattaatg
     4561 ttgaggcttc ggcattatct ttaccatagc gcaagccttt gaaaaaggcg gtatcgtcta
     4621 gctccaaaag cttacgggct tgtgcgtaag tcagtttgga ttttctgtat ggctcatcca
     4681 taagcgtggc gcgttcggta tcggtcaatg gccgctcgct gccttgctct aaaatacgca
     4741 ggttgttcag cttggtcagc cagacgaaac gttcggctgt gtaggtgttt ttagcggctt
     4801 tcggctctgt tggttcgaag gtgcaatgtc ccaacatttt ttgaacagca tcgccggata
     4861 gggcagggcg ttgcgtcatg agcagggttt caataccttc tttaaggtca tctgaaatat
     4921 gcggattacc gaattctttt tgtttttcaa acagcaaatc cagttccgcc tgcaaatctt
     4981 tgcggctgaa cgtatgcgaa taatcgccgc gccggttgcg gatatggccg ctttctttct
     5041 caaatttatt taaagccaat tcggccggtg tgcggaaatc gcctgtctgt aaggcatggg
     5101 cattgtcggc tacgccttta agcaaagcac caagctcctt atcggcagtt tcgccctcgt
     5161 tttttctttg cgacaaatag ccacggtgtt tgattaaatg caataagact gccgaccact
     5221 ccaaaggcgt cagtttgcgg tctaatgcgg ctgagcgaag ttgccatggt gtattcggta
     5281 aggatttaat caagccgttt tcatcaaaat cggcggcttg taatacgcct tcgcgtttta
     5341 ataggcgacg agctcgaagc aggcggtggg cgcgacggcg ggtcaggcgg cggacgctgc
     5401 gtgccaagcg tcttgctgct gcgagagagt cacctgtttt cggtacttct gcgcgctcaa
     5461 atacgcgcac gcctaaatca atcaggcaga ttgggttttc atcttcgtca atttctacca
     5521 tcgcccagcc gacggatgcg atgccgatat cgaggccgag gatgtagttg attggattag
     5581 gtttgaaggc agccatttat tactccgtaa acaacgttgc aaataaaaat aatgataata
     5641 tatcttattg tcttatttat atacaaatag attattgact tatcatctca caacggctag
     5701 aatcccaaac atattgtcgc actgcgaaat gagaaccgtt gctacaataa ggccgtctga
     5761 aaagatgtgc cgcaacgctc tgccccttaa agcttctgct ttaaggggca tcgtttattt
     5821 cggctaaaaa atgccgtctg aaaccggttt tgggcttcag acggcattta tattttgggt
     5881 taccagttga cgcgcaccga ccggctgccg agcaatgttt ccagttcgcc gaacaaggcg
     5941 gaactcggtg taaccgtcca tttccgcggc acttgaagcc tgcccgacgc ttttccgttg
     6001 gcatacgaca gttgcagcgg gatgcgcggc gtgtcgggca gttggtgggc ggcgagcagc
     6061 cgtaccagtc cgccgatgtc gtgatgcggg gcgagggcga ggctgaggct gcgggcgtag
     6121 cgttcgcgtg ccgtttgcag ggtcatgact tggtttgcca tgatgcgcag tccgtcgccg
     6181 ccgccgtagt cgtcgcggct gactttggat tcgataatca gcacttggtc ggctttgagg
     6241 cagtcggcgc agttttccag cgtctgaccg ccgaccatga tttcaacctg cccgctcaaa
     6301 tcttcaaggc tgacgaaggc gattttgccg cgcttgccca tcatcgtacg cacggcggta
     6361 acgaatccgg cgaggcgcac gctgtcttgc ggcttcagac ggcctaattt ggtcggtgcg
     6421 atttggcgga cttcttgggc atacgggccg aacgggtggc cggagaggta aaagccgatg
     6481 acggtttttt cttcggcgag tttttccgat tcgctccaca tcggcgcgtc gatgagccgc
     6541 accggttcga tggcgtcttc catcatgtcg aaaagtccgc cctgattggt gttggcggct
     6601 ttttggtcgg cgttgttcat ggcgaggtcg atgtttgcca agagcatggc gcggttgggt
     6661 tcgatgctgt cgaacgcgcc gccgcgtatc aaggcttcga gggtgcggcg gttcatgtgt
     6721 tctttgccga cgcgctcgca gaagtccaag aggccggtaa acttgccgcc gctttgccgc
     6781 gcggcggtga tggattcgac ggcggcttcg cccgtgcctt taatcgcgcc gagcgcgtag
     6841 cggattttca tgtccggata cggcgtaaag cggtagtcgg attcgttgat gtcgggcggc
     6901 aggaactcaa tgccgttggc gcggcagtcg tcgtagaaat gcttgagctg gtcggtgttg
     6961 tccaattcgg acgacatggt cgccgccata aattcggcgg ggtagtgcgc cttgagccat
     7021 gcggtctggt aggaaatcag ggcgtaggcg gcggcgtggg atttgttgaa accgtagccg
     7081 gcgaattttt ccatgtagtt gaagatttcg tcggattttt cgcgcgaaat gccttgtttt
     7141 gccgcgcctt cggcaaagat ttcgcggtgt ttcaccattt cttcgggctt tttcttaccc
     7201 atcgcgcggc gcagcaggtc cgcgccgccg agcgagtagc cgccgataat ttgcgccgcc
     7261 tgcatcactt gttcctgata caccataatc ccgtaggtcg gcgcgaggat gccttcgagc
     7321 agcggatgga tgtattggaa ttcctggcct ttcatgcgcg cgacgaagtc ggggatgttg
     7381 tccatcgggc cggggcggta gagcgatacg aaggcaatca gttcttcaaa cttggtcgtg
     7441 tgcgccgttt tcagcatttt tttcatgccg gtcgactcga actggaacac ggcggtggtg
     7501 ttcgcatctc ggaagatttg gtaggcggct tggtcgtcga gcggaatctt gccaacatcg
     7561 acgatatcgc cggtggtgtt tttgatgttg ttctgcgcca tttcgataat ggtcaggtta
     7621 cgcagaccta aaaagtcgaa tttcaccaaa cccacgtctt ccacgtcgcc cttgtcgtac
     7681 atggatacgg gagaggcgga ttcatccgcc tgatacacgg ggctgtaatc ggaaatcttg
     7741 cccggcgcaa tcaacacgcc gcctgcgtgc atacccaaac cgcgcgtcag gtcttccagc
     7801 tttttcgcca gcgtaatgag ttcgtccgct tcttccgctt cgattaattc ctgaatctgc
     7861 ggctccgcct tcatcgcgtc gtccaaactc aggggtttgt tggcttccaa cggaatcagc
     7921 ttggacagtt tgtcgcacag cataaacggc agctccaaca cgcgccccac gtcgcggatg
     7981 accgctttgg acgacatcgt gccgaaggta acaatctggc tgaccgcctg agcgccgtat
     8041 ttatcgcgca catattcgat cacgcggccg cggtttgcct gacagaagtc aacgtcgaag
     8101 tcgggcatgg agacgcgttc ggggtttaag aaacgttcaa acagcagcgc gtatttcagc
     8161 gggtcgaggt cggtaatttt cagcgaatac gccaccagcg aacccgcgcc cgaaccgcgt
     8221 cccggcccga ccggacagcc gtgcgttttc gcccagttga taaagtcttg tacgataagg
     8281 aaatagccgg ggaatttcat ctggatgatg atgttcagct caaaatccaa acgttcctga
     8341 tattccggca tttttgccgc acgctccgcc tcgtcgggat aaagctgaac catgcgttcc
     8401 tgcaagccct tgtttgagag tttgatgaga tagtcatcgc gcgataaacc gtcgggcgtg
     8461 gggaaaaggg gcaggaagtt tttgcccaat gtgatgtgca gattgcagcg tttggcaatt
     8521 tctaccgtgt tttccaaggc ctcgggcaaa tcggcgaaac gctccagcat cgtttccggc
     8581 ggaatgaaaa actggcccgg tgtgaaatcg cgcggacgtt ttttgtccgt cagcacccag
     8641 ccgcccgcaa tacacacccg tgcctcgtgc gcgttgaaat catcgctgct cataaactgc
     8701 gtcgggtggg tcgccaccac cggcaaaccc agttcctccg ccagcttcac gctgccggaa
     8761 acgcaagcct cccattcggg gcgttcgggc aggcgttgca gctctaaata aaacgcatcg
     8821 ggaaaccatg ccgcatattt caacgccgcc gcacgcgccg cgtcttcatt gccgttcaac
     8881 agattcacgc ccacttcgcc gtaatgtgcg ccgctcaaac aaatcaagcc gctgttgtcg
     8941 ccgttttcca gccattcggg attgagttcc gcatgatgga tattgcggtc tttgccgaca
     9001 taagccgccg tcagaagctc gctcaagcgc agatagcccg catcgttgcg gataatcagc
     9061 atggcgcgaa acggcttgtc gggcgcattc ggattgccta tccacacgtc cgccgcgccg
     9121 atgggtttaa tccctgcgcc gcggcaggct ttatagaatt tcaccaagcc gaattcgttc
     9181 atcaaatcgc tgatgcccaa agcaggcaaa ccgtattcct gcgctttggc aaccagtttt
     9241 ttaatccgca ccataccgtc ggtaattgag aactcggtat gcaggcgcaa ggggatgtag
     9301 gtcggctcgg tcatggcaaa atcggcgtga acaataaaag gcgtattgta gcagggttgt
     9361 ctttagatgg cggtgtaggt aatgccgttt cgggttcaga cggcattgcc tgcaaatggt
     9421 tttttgaact tttacgacgg caaaaaaatg cctcctgccg tatggcggag gcttcccaag
     9481 gagtattgat agatataaag gactatcaaa ctagttataa ggaactatat accttattcg
     9541 gacggatggc aagcagttaa attaatttta cgttcaaaca ggtttttgat ttcgttttga
     9601 tgccgattgc tggtgtatcg ggcagttcgc gtttgaggag gtgcatcagc gtcaatgtgg
     9661 attcgtcggg gaacaggatt tgcagcctgc cgccggacag gatttctttg accggctggc
     9721 ggcatacggg gtttcagacg gcatttttac ggaacaggcg gtgcggatac atcgctggtt
     9781 ttgcggtaat tttgggtacg gcggcggcag gtgctacaat aacgggctct ttctgcaagg
     9841 gaacatcatg gaagccaccg tctatctcga agacaacgaa tacatcgccc tgtgcgacct
     9901 cttgaaattg gccggacttg ccgaaagcgg cggacaggcg aaggcgttga ttgccgaagg
     9961 gttggtgtcg cgcaacggcg aaaccgaaac ccgtaaaacc gccaaaatac gcggcggcga
    10021 agtcatcgag tttgacggtg cgcgcttgga aatcgccgat ggatacgacc ctgaagcata
    10081 aagccgaagc ccttttgggc gagccgcttt tagacgaacc cgtccgcccc gagtcgtggg
    10141 aatgctgcgg cagcgactgc ggcgacgcgt gcattcagac gatttactgg gcggacaagg
    10201 cccgctacga cgcgcaacgg cggaaattga aagaagcggg ttggtcggac gatgccgtct
    10261 gaaaacggtt cggcttgata
//
LOCUS       DAWGNT010000058        10013 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.058, whole genome shotgun sequence.
ACCESSION   DAWGNT010000058 DAWGNT010000000
VERSION     DAWGNT010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 10013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10013
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.058"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            83..322
                     /locus_tag="WHR98_001029"
     CDS             83..322
                     /locus_tag="WHR98_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307719.1"
                     /translation="MNVWDIWGRMVEIYHKYKKPCLVLAVDFVMGMVFIEPNEELCIG
                     RCYAPMSESPDFANAVAMAVAMICIVWIAVLSMTD"
     gene            535..1836
                     /gene="bioA"
                     /locus_tag="WHR98_001030"
     CDS             535..1836
                     /gene="bioA"
                     /locus_tag="WHR98_001030"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEZ2307720.1"
                     /translation="MPSEHQHTSSLLDFDRTHLLHPYTSMTDPLPVYPVRRAEGVHIE
                     LADGTRLVDGMSSWWCAIHGYNHPVLNQSVEAQMKQMAHVMFGGLTHEPAVELGKLLV
                     GILPQGLDRIFYADSGSVSVEVALKMAVQYQQARGLRAKQNMATVRRGYHGDTWNAMS
                     VCDPETGMHHIFGSALPQRYFVDNPKSRFDDEWDEADLQPVRVLFEAHHTDIAAFILE
                     PVVQGAGGMYFYHPQYLRGLRDLCDEFDIVLIFDEIATGFGRTGKMFACEHAEVVPDI
                     MCIGKGLSGGYMTLAAAITSQKVTETISRGEAGVFMHGPTFMANPLACAVACASIKLL
                     LSQDWQANIRRIESILKCRLKAAWDIRGVKDVRVLGAIGVIELDKGVDMARFQADCVA
                     QGIWVRPFGRLVYLMPPYIISDGVLTKLADKTVQILKEHSK"
     gene            1833..2480
                     /gene="bioD"
                     /locus_tag="WHR98_001031"
     CDS             1833..2480
                     /gene="bioD"
                     /locus_tag="WHR98_001031"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HEZ2307721.1"
                     /translation="MKGVYFVSGIDTDIGKTIATGMLAKQLLQQGKSVITQKPVQTGC
                     QDIAEDIAVHRKIMGIPMQEADKQGLTMPEIFSYPASPHLAARLDGRALDLDKIRTAT
                     QQLAAQYEIVLVEGAGGLMVPLTENLLTIDYIRQQGYPVILVTSGRLGSINHTLLSFA
                     ALKQYGIRLHSLIFNHIHDSSDECVAQDSLSYLKCRLKADFSEAEWMELAKTDAV"
     gene            2495..2971
                     /locus_tag="WHR98_001032"
     CDS             2495..2971
                     /locus_tag="WHR98_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HEZ2307722.1"
                     /translation="MEHLFGKWLPDLPTPISDGISLPMVRLLHTRSLTAALRALPHTF
                     SVELLKLGELETECGGRLVREVLLKLDRIPVVEARSECRIGSAFWQNILDCGTRPLGE
                     RLFQADLEGARSAFEFAVSGEGCGRYFAARRSRFSRHGEEMLLTEYFLPELKRFIG"
     gene            3001..3891
                     /gene="ubiA"
                     /locus_tag="WHR98_001033"
     CDS             3001..3891
                     /gene="ubiA"
                     /locus_tag="WHR98_001033"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HEZ2307723.1"
                     /translation="MNPKSPLFLRLSDRLDVYLRLMRADKPIGTLLLLWPTYWALWLA
                     SDGIPDLAVLAAFTIGTFLMRSAGCVINDFADRDFDGAVERTKNRPFAQGRVKKKEAL
                     LLTAFLCLLAALCLIPLNHLTWLMSLPALFLALTYPFTKRFFPIPQLYLGLAFSFGIP
                     MAFAAVAGNVPPQAWILFAANVLWTLAYDTVYAMADKEDDLKIGIKTSAVTFGRYDIA
                     AVMLCHGGFTLLMAVLGVVIGAAWAYWTAIPIVLLLQYRQYAAIKSRVRQICFETFLA
                     NNRIGWVWFTAIFAHTFFAK"
     gene            4076..4525
                     /gene="ptsN"
                     /locus_tag="WHR98_001034"
     CDS             4076..4525
                     /gene="ptsN"
                     /locus_tag="WHR98_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HEZ2307724.1"
                     /translation="MSLIGEILPLSHIVLDMEVGSKKRLFEEAGLLLERESSLSHADV
                     FECLFAREKLGSTGLGQGVAIPHGRHAGVKQATGAFIRTREPVGFDAPDGKPVSLVFI
                     LLVPENATGEHLEVLSKLAGKFSQKSIRESLMTVSSAEEARAILTEE"
     gene            4527..5489
                     /locus_tag="WHR98_001035"
     CDS             4527..5489
                     /locus_tag="WHR98_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HEZ2307725.1"
                     /translation="MPSISVRRLFDDNQYKLQLAWAAGNSGADNRIGVEADKPVLALV
                     GHLNFIHPNQIQVVGLAESEYLNRLESGETGYQFGDLFDISMSLVIVANGLPVSPGLR
                     DYCHKNDIPLLTSKLESPYLMDVLRIYLQRTLAASSVKHGVFLDVFEIGVLITGHSGL
                     GKSELALELISRGHSLIADDAVELFRIGPETLEGRCSPMLRDFLEVRGLGILNIRHIF
                     GETSIRPKKILQLIINLVEADDEYMKQLDRLSIRTETESILNVNVRSVTLPVAVGRNL
                     AVLVEAAVRNYILQLRGKDSTREFLERHQTQLKENEQNHENRPD"
     gene            5470..6324
                     /gene="rapZ"
                     /locus_tag="WHR98_001036"
     CDS             5470..6324
                     /gene="rapZ"
                     /locus_tag="WHR98_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEZ2307726.1"
                     /translation="MKIVLISGLSGSGKSVALRQMEDSGYFCVDNLPLEMLPSLVSYH
                     IERADETELAVSVDVRSGIDIGQAREQIASLRGLGHRVEVLFVEAEEAVLVRRFSETR
                     RGHPLSNQDMTLLESLKKEREWLFPLKEIAYCIDTSKMNAQQLRHAVRQWLKVERTGL
                     LVILESFGFKYGVPNNADFMFDMRSLPNPYYDPELRPYTGMDKPVWDYLDGQPLVQEM
                     VDDIERFVTHWLPRLEDESRSYVTVAIGCTGGQHRSVYVVEKLARRLKGRYELLIRHR
                     QAQNLSDR"
     gene            6405..7346
                     /gene="ylqF"
                     /locus_tag="WHR98_001037"
     CDS             6405..7346
                     /gene="ylqF"
                     /locus_tag="WHR98_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HEZ2307727.1"
                     /translation="MAIQWFPGHMNKAKKAIAERAKSVDMVIEMLDARMPASSENPLL
                     AQLSKGKPKLKILNKQDLADPERTKVWLDHYNSRPDTRAIALDSSETGAHGKITQACR
                     AMIPHRQGIDKPLRVLICGIPNVGKSTLINGMIGKKSAKTGNEPGITKAEQRLFLADD
                     FWLYDTPGMLWPKIIVEEGGYNLAAGGAVGRNALDEEEVALELLDYLRRHYLPMLQER
                     YQADKDPSSHWDENVWLEWIAKKRGAVLSGGRINYQKAAENILTDFREGKIGRITLET
                     PNQWETWLKKARQKEAELKAIREARKAERKGQKPSEA"
     gene            7447..8049
                     /locus_tag="WHR98_001038"
     CDS             7447..8049
                     /locus_tag="WHR98_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEZ2307728.1"
                     /translation="MTDKISPDALIEAALLTQTEPLTEKSMRELCVPPLSQDKLIDVL
                     AQLKTRWQDRALQLVHTQEGWRFQIVQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQ
                     QPVTRGDIEGIRGVAVSQNVMQTLQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLD
                     GLEELPPLTELGELVLPDLIEMPPTDEEEPETVPSDTLPN"
     gene            8233..9906
                     /gene="recN"
                     /locus_tag="WHR98_001039"
     CDS             8233..9906
                     /gene="recN"
                     /locus_tag="WHR98_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEZ2307729.1"
                     /translation="MLLTLSLRDFVIVENLNLDFQSGFTVLTGETGAGKSITLDAIGL
                     LLGDKADYSQVRSGAKEAQLSALFDISHLPVLKAELYEQGLLNDGEEELSIRRIIDAK
                     GKSRSFINNQAATLAQLKAVGSQLIDIHGQNAHHSLNQEAAQRELLDAFAGSRAQAET
                     VRQLYQNWANSKKALQEAQEQAENIALEQERLEWQFNELNQLDIKQGEWEALSQSHDS
                     LAHSAELLQAAEEVGSKIDGDNGIQRHIYQCQKLLANLQNIEPRFAESLNMLASIEAE
                     LGEISANMRDVAGRSDINPNELAAQEQRMGELMGMARKYRIEPEELPAKLAEIEERLQ
                     SLQAAADLDALEHNVAHNFAEYQEAAHILSAMRHQAAERLSGETTEHMQHLAMKGARF
                     DIVLLPSSPTAHGLEQVQFQVAANKGNPPRPLNKVASGGELARISLALQVVASQYTQV
                     PTLIFDEVDTGIGGGVAEMVGKALRALGRKHQVLAVTHLPQVASCGENHWRVRKHSEG
                     EQTVSEISILDEIQRVEEVARMLGGEVITDTTRQHAAELLQLASKNSLF"
BASE COUNT         2424 a         2540 c         2737 g         2312 t
ORIGIN      
        1 gccttgtcct gatttttgtt aatccactat aaaatagggc tgtaaccttc aatcggaatt
       61 tgttgcctgc gggatatgcg gtatgaatgt ttgggatata tggggcagga tggtggaaat
      121 ctatcataag tataagaagc cgtgcctggt tttggcggtg gattttgtga tgggtatggt
      181 attcatagag ccgaatgagg agctgtgcat cggcagatgc tatgcgccta tgtcggagtc
      241 ccctgatttt gctaacgctg ttgcgatggc tgttgctatg atctgtatcg tatggattgc
      301 cgttttgtct atgactgatt gaagcgttgg gcggaggctg tgtgaaacaa tattgggcgt
      361 tgggtcgtct gattccaatc gggcttgggg aatgcgaaac ggtgtgcgct tatactgcgg
      421 acgatttgtt gcgtggtttt acgcccgaaa cggatggaaa ggtgtgggaa gcggtctgtc
      481 ggagtagaat acgcgtttgc gtttgaatac agtaagaaga aaagagagaa acttatgccg
      541 tctgaacatc aacacacatc atcattgctt gatttcgacc gcacccacct gctccatccc
      601 tatacatcta tgaccgaccc gttgcctgtt tatccggtgc gccgcgcgga gggcgtgcat
      661 atcgaattgg cggacggtac gcggctggtt gacgggatgt cgtcttggtg gtgtgcgata
      721 cacggctaca atcatcctgt tttgaatcag tcggttgaag cgcagatgaa acaaatggcg
      781 cacgtgatgt tcggcggttt gacgcacgag ccggcggtgg agctgggcaa attgttggtc
      841 gggattttgc cacaggggct ggatcgtatt ttttatgcgg attcgggttc ggtttcggtg
      901 gaagtcgcgc tgaagatggc ggtgcaatat cagcaggcgc ggggtttgcg tgcaaaacaa
      961 aatatggcga cagtgcggcg cgggtatcac ggcgatactt ggaacgcgat gtccgtctgc
     1021 gacccggaaa cggggatgca ccatattttc ggcagcgcgt tgccgcagcg ttattttgtc
     1081 gataatccga aaagccgttt cgacgatgaa tgggacgagg cggatttgca gcctgtccgc
     1141 gtcttgtttg aagcgcatca tacggacatt gccgccttta ttttggaacc ggtcgtgcag
     1201 ggcgcgggcg gtatgtattt ttatcatccg cagtatcttc gcggattgcg cgatttgtgc
     1261 gacgagtttg atatcgtttt gatttttgat gaaatcgcca ccggattcgg gcgcacgggc
     1321 aagatgtttg cctgcgaaca cgcggaggtc gtgccggata ttatgtgcat cggcaagggt
     1381 ttgagcggcg gctatatgac gctggcggca gcaatcactt cgcaaaaagt taccgaaacg
     1441 atttcgcgcg gcgaagcggg cgtgtttatg cacggcccga catttatggc aaacccgctg
     1501 gcgtgtgccg ttgcctgcgc ttcgatcaaa ctgcttttgt ctcaagattg gcaggcaaat
     1561 atccgccgca ttgaaagcat cttaaaatgc cgtctgaaag ccgcatggga cattcgcggc
     1621 gtgaaagacg tgcgcgtttt gggtgccatc ggcgtgatcg agctggataa aggcgtggat
     1681 atggcgcgtt ttcaagcgga ctgcgtggcg cagggcattt gggtgcgccc gttcggcagg
     1741 ctggtgtatc tgatgccgcc gtatattatt tcagacggcg ttttgaccaa acttgccgac
     1801 aaaaccgtac aaatcttgaa ggaacacagc aaatgaaagg cgtttacttc gtcagcggca
     1861 tagacacgga catcggcaaa accatcgcca ccggtatgtt ggcaaaacaa ttgttgcagc
     1921 agggcaaaag cgtgatcacg caaaagcccg tgcaaaccgg ttgccaagac atcgccgaag
     1981 acatcgccgt tcaccgcaaa atcatgggca tcccgatgca ggaagcggac aaacaagggc
     2041 tgaccatgcc tgaaatcttc agttatccag cttcgcctca tctcgctgcc cgtcttgacg
     2101 gcagggcttt ggacttggac aaaatccgca ccgccacgca gcaactggcg gcgcaatacg
     2161 aaatcgtctt ggtcgaaggc gcgggcggat tgatggttcc gctgacggaa aacctgttaa
     2221 ccattgatta tatccgtcag caaggctatc ccgtcatcct cgttaccagc ggacggcttg
     2281 gcagtatcaa ccacacttta ctcagtttcg ccgcgctcaa acaatacggc atccgcctgc
     2341 acagcctgat tttcaaccat attcacgaca gttccgacga atgtgtcgcc caagacagcc
     2401 tgagctactt gaaatgccgt ctgaaagccg atttttccga agcggaatgg atggagttgg
     2461 caaaaacaga cgcggtataa agattgggaa aaatatggaa cacctatttg ggaaatggct
     2521 gcccgacttg cccaccccca tttcagacgg catcagcctg ccgatggtgc ggctgctgca
     2581 cacccggtcg ctgaccgccg cattgcgcgc cttgccgcat acattttcgg tggaactgct
     2641 gaaactgggc gaattggaga cggaatgcgg agggaggctg gtgcgcgaag ttttgttgaa
     2701 gctggaccgt atccctgttg ttgaggcaag gagcgaatgc cgtatcggtt cggcgttttg
     2761 gcaaaacatt ttggactgcg gcacgcgtcc tttgggcgag cgtctgtttc aagccgattt
     2821 ggaaggggcg cgttcggcgt ttgagtttgc cgtttccggc gaaggatgcg gacggtactt
     2881 tgccgcgcgg cgttctcggt tttcccgtca cggcgaggaa atgctgctga ccgagtattt
     2941 tctgcccgaa ctgaaacgct ttatcggata aaataccgtt ttttcaagct gtgcggcaat
     3001 atgaatccta aatccccttt atttttacga ctgtccgacc gtttggatgt gtacctgcgc
     3061 ctgatgcggg cggacaagcc cattgggacg ctgcttttgc tgtggccgac ctactgggca
     3121 ttgtggctgg cttcagacgg cattcccgat ttggcggtat tggcggcgtt tacaatcggc
     3181 acgtttttaa tgcggagtgc cggttgcgtc atcaacgatt ttgccgaccg cgattttgac
     3241 ggtgctgtcg agcgcaccaa aaaccgtccg ttcgcacagg gcagggtcaa gaaaaaagaa
     3301 gcgctgctgc tgacggcatt tttgtgcctg cttgccgcat tgtgcctgat tccgctgaat
     3361 catctgacct ggctgatgag cctgcccgcg ctgtttcttg cgctgactta cccgtttacc
     3421 aaacgctttt ttccgattcc ccaactctat ctcgggcttg ccttttcctt cggtatcccg
     3481 atggcgtttg ccgccgttgc cggaaacgtg ccgcctcaag cgtggatact ctttgccgcc
     3541 aatgtgttat ggactctggc gtatgacacg gtttatgcaa tggcggacaa agaagacgat
     3601 ttgaaaatcg gcatcaaaac ctccgccgtc acgttcgggc gttacgacat cgccgccgtt
     3661 atgctgtgtc atggcggctt taccctgctg atggcagtat tgggggtggt tatcggtgcg
     3721 gcatgggcat attggacggc aatccccatc gtcctgctgc tgcaataccg ccaatatgcc
     3781 gccatcaaaa gccgcgtccg gcaaatctgt tttgaaacgt ttttggcaaa caacagaatt
     3841 ggttgggtgt ggtttaccgc catttttgcc catacgtttt tcgcgaaata aggcagggca
     3901 atgccgtctg aagagccgta aaccgctttg gacggcattt ctatctgtgc cgaaaagcgt
     3961 taaaatatgt ttttaaaacg ctgtgttatg tcagcccgta ccgtatgcgg gattgagatt
     4021 tgccccggca gtcggtacaa tctttctgtt ttgcgatgtc tgaaaagaga agcttatgag
     4081 ccttatcggc gaaattttgc ctttgtccca tattgttttg gatatggagg tgggcagtaa
     4141 aaaaaggctg tttgaggaag cgggcctgct tttggaacgc gaatcctcat tgtcccatgc
     4201 tgatgttttc gaatgtcttt ttgcccgtga aaaactcggt tcgaccggtt tggggcaggg
     4261 cgttgccatc ccgcacggcc gtcatgccgg cgtgaagcag gcgacgggcg cgtttatccg
     4321 cacgcgcgaa cccgtcggat ttgacgcacc ggacggcaaa ccggtttccc tggtttttat
     4381 cttgctggtt ccggaaaatg cgacgggaga gcatttggaa gtattgtcca aactggccgg
     4441 caagttttcc caaaaaagca tccgcgaatc gctgatgacc gtttcttctg cggaagaagc
     4501 ccgcgccatc ctgactgaag aataatatgc ccagtatctc tgtccgccgg ctgtttgacg
     4561 acaaccaata caaactgcaa cttgcctggg ccgccggcaa ttcgggtgcg gacaaccgta
     4621 tcggcgtaga ggcggacaag cccgtcctcg ccttggtcgg acacctgaat ttcatccacc
     4681 ccaaccaaat ccaagtggtc ggtttggcgg agtcggaata tctgaaccgt ctcgaatcgg
     4741 gggaaacggg ttatcagttc ggcgacctgt tcgacatttc tatgtctttg gttattgtgg
     4801 caaacggctt gccggtttcc ccggggctgc gcgactattg ccataaaaac gatattccac
     4861 tgctgacttc caaactcgaa agcccctatc tgatggacgt gttgcggatt tacctgcaac
     4921 gcaccctggc ggcatcgtcc gtcaaacacg gcgtatttct cgatgtgttt gaaatcggcg
     4981 tgctgattac cggacattcc ggcttgggca agagcgaatt ggcgttggaa ctgatttcgc
     5041 gcggccacag cctgattgcc gacgatgcgg tcgagctgtt ccgcatcggt ccggaaacat
     5101 tggaagggcg ttgttcgcct atgctgcgtg attttttgga agtgcgcggc ttggggatac
     5161 tcaatatccg ccatattttc ggcgaaactt ccatccgccc caaaaaaatc ctgcaactca
     5221 ttatcaattt ggtcgaggca gacgacgagt atatgaagca gctcgaccgt ttgagtatcc
     5281 gtaccgaaac cgaatccatc ctcaacgtca acgtccgttc ggtaacgctg cctgtcgcgg
     5341 tcggacgcaa ccttgccgta ttggttgaag cggcggtgcg caattatatt cttcagttgc
     5401 gcggtaagga cagtacgcgc gaatttttgg aacgccatca gacgcaactt aaagaaaacg
     5461 aacagaatca tgaaaatcgt cctgattagc gggctgtccg gttcgggcaa atccgtcgca
     5521 ctgcgccaaa tggaagattc gggttatttc tgcgtggaca acctgccctt ggaaatgctg
     5581 ccgtcgctgg tgtcgtatca tatcgagcgt gcggacgaaa ccgaattggc ggtcagcgtc
     5641 gatgtgcgtt ccggcataga catcggacag gcgcgggaac agattgcctc tctgcgcgga
     5701 ctggggcaca gggttgaagt tttgtttgtc gaggcggaag aggccgtgct ggtccgccgg
     5761 ttttccgaaa ccaggcgagg ccaccctctg agtaatcagg atatgacctt gttggaaagc
     5821 ttaaagaaag aacgggaatg gctgttcccg cttaaagaaa tcgcctattg tatcgacact
     5881 tccaagatga atgcccaaca gctccgccat gcagtccggc agtggctgaa ggtcgaacgt
     5941 accgggctgc tggtgatttt ggagtccttc gggttcaaat acggtgtgcc aaacaacgcg
     6001 gattttatgt tcgatatgcg cagtctgccc aacccgtatt acgatcccga gttgaggcct
     6061 tacaccggta tggacaagcc cgtttgggat tatttggacg gacagccgct tgtgcaggaa
     6121 atggttgacg acatcgaaag gtttgttacg cattggctgc cgcgtttgga ggatgaaagc
     6181 aggagctacg ttaccgtcgc catcggctgt accggcgggc agcaccgttc cgtctatgtt
     6241 gtcgaaaaac tcgcccgaag gttgaaaggg cgttatgaat tgctgatacg gcacagacag
     6301 gcgcaaaacc tgtcagaccg ctaattccgt caaaccatta tgccgtctga aaccccgtcc
     6361 tccgtttcag acggcatttc aaatattgaa aagaaagaac agacatggca atccaatggt
     6421 ttcccggcca tatgaacaag gcgaaaaaag ccatcgccga gcgtgcaaaa agcgttgata
     6481 tggtgattga aatgctggac gcgcgtatgc ccgcctccag cgaaaacccc ctgcttgccc
     6541 agctttccaa aggcaaaccc aaacttaaaa tcctaaacaa acaagatctt gccgaccccg
     6601 aacgcacaaa ggtctggctt gaccactaca acagccgccc cgacacgcgc gccattgccc
     6661 tcgattcctc cgaaaccggc gcacacggca aaatcaccca agcctgccgc gcgatgattc
     6721 cccaccggca aggcatagac aaacccttgc gcgtcttgat ttgcggcatt cccaacgtcg
     6781 gcaaatccac cctcatcaac ggcatgatag gcaaaaaatc cgccaaaacc ggcaacgaac
     6841 ccggcatcac caaagccgaa caacgccttt tccttgccga cgacttctgg ctctacgaca
     6901 cccccggaat gctgtggccg aaaatcatcg tcgaagaagg cggctacaac cttgccgccg
     6961 gcggcgcagt cggacgcaac gcgttggacg aagaagaagt cgccctcgaa cttttagact
     7021 acctccgccg ccactacctc cctatgttgc aagaacgcta ccaagccgac aaagacccca
     7081 gcagccactg ggacgaaaac gtttggctcg aatggatagc caaaaaacgc ggcgcagtcc
     7141 tcagcggcgg acggatcaac taccaaaaag ccgccgaaaa catcctcacc gacttccgtg
     7201 aaggcaaaat cggcagaatc accctcgaaa cgccgaacca atgggaaact tggctcaaaa
     7261 aagcccgtca gaaagaagcc gaactcaaag ccatacgcga agccagaaaa gcagagcgta
     7321 aagggcagaa gccttcggaa gcataaagaa tgccgtctga aaaatatttt tcaggcagct
     7381 tctctctact ccaaccgatt tcagacggca tatccaaacc catgccgttt cagcacggat
     7441 acccgtatga ccgacaaaat ttctcccgac gcactaattg aagccgcact gctgacccaa
     7501 accgaaccgc tgaccgaaaa atctatgcgc gaattgtgtg tgccgccact gtcgcaggac
     7561 aaactgattg atgtgttggc gcagttgaaa acgcgttggc aggatagggc gttgcaactg
     7621 gtgcatacgc aagagggctg gcgttttcag attgttcaga cggcattcga gcggctgggc
     7681 agcctgcaag aacagcgtgc gccgcgctac tcccgcgccg tgatggaaac actggcgatt
     7741 atcgcctacc agcagcccgt aacgcgcggc gacatcgagg gcatacgcgg cgtggcggtg
     7801 tcgcagaacg tgatgcagac cttgcaggat cgggggtgga ttgaagtcat cggacatcgg
     7861 gacacattgg gaaaacccgc attgtgggca acaacggcaa cgtttctcag cgatttgcgc
     7921 ttggacggtc tggaagaact tcctccgctg accgaactgg gcgaactggt tttgcccgat
     7981 ttgatagaaa tgccgcctac ggatgaagaa gagccggaaa ccgtaccgtc cgataccctg
     8041 cccaactgaa attccaaatg ccgtctgaaa cgcacattgc ttcagacggc atttcaacaa
     8101 ataagcagat aaaaacaagc actaagcaaa attaaggaaa aacttatttt taatttaaaa
     8161 aatcttagtt ataattcgta tatctaaagt tgatattgct tttgtcggta gaattgctaa
     8221 ggaatcctca cgatgcttct aacactttct ttgcgtgatt ttgtcattgt cgaaaatctg
     8281 aatctggatt ttcaaagcgg ctttaccgta ttgaccggag aaactggcgc gggcaagtcc
     8341 attactttgg atgcgattgg tctgctgttg ggcgataaag ccgattacag ccaagtccgc
     8401 agcggcgcaa aagaagcgca gttgtcggcg ttgtttgata tttcccattt acctgtttta
     8461 aaagcagaat tgtatgaaca ggggctttta aacgacggag aagaagaact cagtatccgc
     8521 cgcattatcg atgccaaagg caaaagccgc agctttatca acaatcaggc cgctaccttg
     8581 gcgcaactca aagccgtcgg cagccagctt atcgacatcc acgggcaaaa cgcccatcat
     8641 tcgcttaatc aggaagccgc tcagcgcgaa ttgttggacg catttgcggg cagcagggcg
     8701 caggcggaaa ccgtcaggca gctttatcaa aactgggcaa actcaaaaaa agcattgcag
     8761 gaagcgcagg aacaggcaga aaacattgca ctcgaacaag agcgtctgga atggcagttt
     8821 aacgaattga atcagttgga cattaaacaa ggcgaatggg aagccctcag ccaaagccac
     8881 gacagccttg cccattctgc cgagctgttg caggctgccg aagaagtcgg aagcaagatt
     8941 gacggcgaca acggcatcca acgccatatc tatcaatgtc aaaaactatt ggccaatctg
     9001 caaaacatcg agccgcgctt tgccgagagc ctgaatatgt tggcaagcat cgaggccgaa
     9061 ttgggcgaaa tcagtgccaa tatgcgcgat gtggcaggtc gcagcgacat caaccccaat
     9121 gaattggcgg cacaggaaca gcgtatgggc gaactgatgg ggatggcgcg gaaataccgg
     9181 atcgagcctg aagagttgcc tgccaagttg gcagaaatcg aagaacgcct gcaaagcctg
     9241 caagctgccg ccgatttgga cgcgctcgag cataatgttg cccacaattt tgccgaatat
     9301 caggaagctg cccacatcct ttctgccatg cgccatcagg cggcagagcg tttgagcggc
     9361 gaaacgaccg agcatatgca acaccttgcc atgaaaggtg cacgtttcga catcgtcctg
     9421 ttgccctcgt cgccgacggc acacggtttg gagcaggttc aatttcaagt tgccgccaac
     9481 aaaggcaatc cgccccgtcc gctgaataaa gttgcctccg gcggcgaatt ggcgcgtatc
     9541 agccttgcct tacaggttgt tgccagccaa tatacccaag ttcccaccct gatttttgat
     9601 gaggtcgata ccggtattgg agggggagtg gctgaaatgg tcggcaaggc attacgtgcg
     9661 ttgggcagaa aacatcaggt gcttgccgtt acccatcttc cgcaagtcgc atcctgcggc
     9721 gaaaaccact ggcgggtgcg caagcacagc gagggagagc aaaccgtcag cgaaatcagt
     9781 atattggatg aaatccaacg ggtcgaagag gttgcccgta tgttgggcgg agaagtcatt
     9841 accgatacga cgcggcaaca tgcggcagaa ttgctgcaac ttgcgtcgaa aaatagttta
     9901 ttttaaaatc aatcagttaa aaaataacta aaaataaaag tctaaaacaa tagacagaac
     9961 tcagataaat ccgtattatc acgctttctt aatcacttga acaagtgatt gtg
//
LOCUS       DAWGNT010000059         9794 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.059, whole genome shotgun sequence.
ACCESSION   DAWGNT010000059 DAWGNT010000000
VERSION     DAWGNT010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9794
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.059"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(10..1305)
                     /locus_tag="WHR98_001040"
     CDS             complement(10..1305)
                     /locus_tag="WHR98_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEZ2307730.1"
                     /translation="MIRPDFQEYLPSYYFSSVNPHTVYPKLQCRLKTDTCIIGGGLSG
                     LCTALPLAEQGHETVVLEAARIGFGASGRSGGQVISDYACGMEEIEKQVGLEQAQWFW
                     QQSLQAIELVDERVRKHTIDCDWQRGYATVAVRPQHWEELQQWHEHAQRHYGASHYQL
                     WDNTELKQQLDSDMYQGAQFDPLSGHLHPLNYTLGIARAAAEAGTKIFEHSPMIRIEP
                     YQNGWLVYTPEGSVECKNLVYAVNTYAGLNPIFRPLERKAIAVSTFIIATEPLGARAK
                     GLIRNNMAVCDNRHILDYYRLSADGRLLFGGKDNEFIDNPARMTELVRQDMLKVFPQL
                     ADVKIEYSWGGECDITANLVPHFGRLAPNVFYTQGYSGHGMAITGIAGLAVAEAILGD
                     ECRLKPFERLRQPNIILQPFLRKLGSFLGSKYYQWKDSR"
     gene            complement(1431..2318)
                     /locus_tag="WHR98_001041"
     CDS             complement(1431..2318)
                     /locus_tag="WHR98_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEZ2307731.1"
                     /translation="MQKSKLSWFLKLMLALSLAFLYIPLVVLVVYSFNESKLVTVWGG
                     FSTRWYGALLENDTILEAAWLSLRIAVVSSLAAVVLGTLAGYAMARIKRFRGSTLFAG
                     MISAPMVMPDVITGLSMLLLIIQVQIFLQGSEWLQHLYFDRGFFTIFLGHTTLCMAYI
                     TVVIRSRLVELDQSLEEAAMDLGARPLKIFFVITLPLIAPAIASGFLLGITLSLDDLV
                     ITSFLSGPGSSTLPQVIFSKIKLGLDPQMNVLATILIGIIGTLVIIVNYWMMRQATKR
                     DREAAEAYRQEKLAAEKAN"
     gene            complement(2318..3283)
                     /locus_tag="WHR98_001042"
     CDS             complement(2318..3283)
                     /locus_tag="WHR98_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEZ2307732.1"
                     /translation="MNLNKLKNKLFRRPGQRAVIAVPYIWLLVLFLIPFAIVLKISFA
                     EQEIAIPPFTPLTSIDEDLGRLNIAISYQNYADIFQNFWHTLNPFGDSENSNIYLMTY
                     WSSIKTALMTTVICLLVGYPTAYAISRANPSVRNGLLLAIMLPFWTSFLLRVYAWMGL
                     LGHNGIVNNMLIKIGIISEPLDLFYNAFSLNLVMVYAYLPFMILPLYTQLVKLDNRLL
                     EAASDLGAGPVKSFLTITLPLSKTGIIAGSMLVFVPAVGEFVIPELVGGSENLMIGKV
                     LWQAFFDQNNWPLASAVAVVMVALLVVPIALFQHYENRELEEGAK"
     gene            complement(3299..4423)
                     /gene="potA"
                     /locus_tag="WHR98_001043"
     CDS             complement(3299..4423)
                     /gene="potA"
                     /locus_tag="WHR98_001043"
                     /EC_number="7.6.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter ATP-binding protein"
                     /protein_id="HEZ2307733.1"
                     /translation="MTATTASSTKPYLQIQGLVKKFGDNYAVDNIDLDIYQHEIFALL
                     GSSGSGKSTLLRMLAGMESPNQGKIILDGQDITKLAPYDRPINMMFQSYALFPHMTVE
                     QNIAFGLKQDKMPKGEIAARVEEMLRLVQMTKFAKRKPHQLSGGQQQRIALARSLAKR
                     PKILLLDEPLGALDKKLRQQTQLELVNTLEQVGVTCIMVTHDQEEAMTMATRIAIMSD
                     GQLQQVGTPSDVYDYPNSRFTAEFIGETNIFDGVVIEDHADYAVIECEGLENHVRIDH
                     GLGGPSEQDLWVSIRPEDIDLYKEKPEYLGDYNWAKGTVKEIAYLGSFAIYHIKLANG
                     RVVKSQVPAPYWYVRNITPPTWDETVYISWPENQPTPLFR"
     gene            complement(4618..4725)
                     /locus_tag="WHR98_001044"
                     /pseudo
     CDS             complement(4618..4725)
                     /locus_tag="WHR98_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(4804..5073)
                     /gene="rpsO"
                     /locus_tag="WHR98_001045"
     CDS             complement(4804..5073)
                     /gene="rpsO"
                     /locus_tag="WHR98_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEZ2307734.1"
                     /translation="MALTVEQKAQIVKDFQRKEGDTGSSEVQVALLTFRINDLTPHFK
                     ANPKDHHSRRGLLKMVSQRRRLLAYLRRTQPDTYRALITRLGLRK"
     gene            complement(5296..6231)
                     /gene="secF"
                     /locus_tag="WHR98_001046"
     CDS             complement(5296..6231)
                     /gene="secF"
                     /locus_tag="WHR98_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEZ2307735.1"
                     /translation="MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVE
                     FTGGTVMEVQYQQGADVNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQL
                     SNQVMDLLKKDSPDVTLRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRF
                     AVSAIIANMHDIVIILGCFAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRK
                     PAMRGHAVPEVIDNAITATMSRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVF
                     GIYSSVLVASPLLLMFGLSRDNIGKEPKKKEEIVV"
     gene            complement(6235..8088)
                     /gene="secD"
                     /locus_tag="WHR98_001047"
     CDS             complement(6235..8088)
                     /gene="secD"
                     /locus_tag="WHR98_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEZ2307736.1"
                     /translation="MNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAII
                     INEQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTLGEGYITA
                     LNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRR
                     EKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVN
                     KVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTAT
                     LELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQPSF
                     DQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGR
                     VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI
                     VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNV
                     LINERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAV
                     VHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGAVWKPEAETAAGKE"
     gene            complement(8300..8566)
                     /gene="yajC"
                     /locus_tag="WHR98_001048"
     CDS             complement(8300..8566)
                     /gene="yajC"
                     /locus_tag="WHR98_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEZ2307737.1"
                     /translation="MNQAVAQFAPLVLIMVVFYFLIMRPQQKKFKAHQAMLAALKVGD
                     KVVLAAGFKGKVTRVGEQFFTVDIGQGTKIEVEVERNAIAAKVD"
     gene            8694..>9794
                     /locus_tag="WHR98_001049"
     CDS             8694..>9794
                     /locus_tag="WHR98_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HEZ2307738.1"
                     /translation="MSLTRLILKFYALLRLFLGKNARTAWISHPACAGHEPGANHPDS
                     PDRILCIEQALRRAGIWQHLQTIEAEEISDTRLALVHSSKYLNRLESCLPQKGKISRL
                     DNDTAISTGSLSAARFAAGSAVQAVDMVMNRKAWHAFCAARPPGHHAGSGKAGGFCLL
                     NNVAAGVMHAIAEYRLKRIAVIDFDVHYGDGTAEIFKDDPRILFFNLFETDLFPFPEN
                     NDMPDGGNMVHLPLPPGTGSRTFREAVRRQWLPRLAAFKPELVLLSAGFDAHRLDESG
                     RLNLHEADFAWLTHKIIQTASGCPGKIVSVLEGGYTLEPLAQSAAEHIRVLAGLGKSD
                     AATAYQKTLDPTKKRFAKPKTGQVRQPTQSDRY"
BASE COUNT         2517 a         2577 c         2433 g         2267 t
ORIGIN      
        1 ctgcgacgct taacggctgt ctttccactg ataatatttc gagccgagga aagaaccgag
       61 tttgcgcaaa aacggttgca ggataatatt cggctggcgc aaccgctcaa acggcttcag
      121 acggcattcg tcccctaaaa ttgcttcggc aaccgccaaa cctgcaatgc ctgttatcgc
      181 catcccgtgt ccggaataac cttgcgtata aaaaacattc ggggctaaac gtccgaaatg
      241 cgggacaagg ttggcggtaa tgtcgcactc cccgccccac gaatattcga ttttgacatc
      301 ggcaagctgc ggaaaaactt taagcatatc ttggcggaca agctcggtca tacgcgcggg
      361 attgtcgata aactcgttat ccttaccgcc gaaaagcagt ctgccgtccg cgctgaggcg
      421 gtaataatcc aaaatatggc ggttgtcgca tactgccata ttgttgcgga taagcccttt
      481 tgcacgcgcg cccaagggtt ctgtggcaat aataaaggtg ctgacagcaa tcgccttgcg
      541 ttccaaaggc cggaatatcg gattcaaacc ggcataagta ttgacggcgt acaccagatt
      601 tttgcattcg acgctgcctt cgggggtgta aaccagccaa ccgttttgat aaggttcaat
      661 gcgtatcatg ggagaatgct caaaaatctt cgtaccagct tcggcagcgg cgcgggcgat
      721 gcccaacgtg taattgagcg gatggagatg cccggacaag ggatcgaact gtgcgccttg
      781 gtacatatcg ctgtcaagct gctgcttcag ttcagtgtta tcccagagtt gataatgact
      841 cgcaccgtaa tgccgttggg cgtgttcatg ccattgttgc aattcttccc aatgctgcgg
      901 acggacggca accgtggcat aaccgcgctg ccaatcgcaa tcgatggtat gtttgcggac
      961 gcgttcgtcc accagttcga tcgcctgcaa agactgttgc caaaaccatt gcgcctgttc
     1021 caaaccgacc tgtttttcaa tttcctccat accgcaggcg taatcgctga taacctgccc
     1081 gccactccgt cccgacgcgc cgaaaccgat acgcgcggct tccaacacaa ccgtttcatg
     1141 tccctgctcc gccaagggca atgcagtgca caaaccactc aatccgccgc cgatgataca
     1201 ggtatcggtt ttcagacggc attgaagttt cggataaaca gtatgaggat taaccgaact
     1261 gaaataataa gaaggcagat attcttgaaa atcagggcga atcattgtgt ttgctttatc
     1321 gggtatattt tcggacggaa tgatacaggc tgtcgagcca tatcgtccaa acagaaaatc
     1381 ggttgaagaa aacaggctga cccagtcatg cggtcagcct gccttattaa ttaatttgct
     1441 ttctcggcag ccaatttttc ttggcggtag gcttctgccg cttctcggtc acgcttggtt
     1501 gcctgcctca tcatccaata attgacgatg atgaccaatg ttccgatgat gccgattagg
     1561 atggttgcca aaacgttcat ctgcggatcg agacccaact tgattttgga gaaaatcacc
     1621 tgcggcaatg tggatgaacc ggggccggag aggaatgagg taatcaccaa atcatccaaa
     1681 gacagggtaa tgccgagcag aaagcctgaa gcgatggcag gggcaatcaa aggcaaagtg
     1741 atgacaaaaa agattttcag cggacgcgcg cccaaatcca ttgcggcttc ttcgagcgat
     1801 tggtcaagct caaccagacg cgaacggata acaacggtaa tgtatgccat gcacagcgtc
     1861 gtatgtccta agaaaatagt gaaaaagcca cgatcgaagt agagatgttg taaccattcg
     1921 ctgccctgca aaaatatctg cacctgaata atcagcagca gcatagacag gccggtaatc
     1981 acgtcgggca tcaccatagg cgcggaaatc ataccggcaa acagcgtgct gccgcgaaaa
     2041 cgtttgatac gcgccatcgc atagcccgcc agcgtgccca aaacgacagc ggcaagcgaa
     2101 gacacgacgg caatacgcag cgacagccaa gcagcttcca agatggtgtc gttttccaac
     2161 aatgcgccgt accacctggt cgaaaagccg ccccaaacgg taacgagctt ggattcgtta
     2221 aacgaataga caaccaaaac gaccagtggg atatacagaa acgccagcga caatgccaac
     2281 atcagtttca agaaccaaga caatttggat ttctgcatta tttggctcct tcttccaatt
     2341 cgcggttttc ataatgctga aacagggcaa tcggcacgac cagcagcgcg accatcacga
     2401 cggcgacggc ggaagccagc ggccagttgt tttgatcgaa gaacgcctgc cacaagactt
     2461 taccaatcat caggttttcc gaaccgccga ccagctcggg aatgacgaac tcgccgacag
     2521 cagggacgaa aaccaacatc gaacctgcaa taatgccggt tttagacaga ggcagtgtaa
     2581 tcgtcaagaa cgacttgacc ggtcccgcac ccaaatcgga agctgcttcg agcaggcggt
     2641 tgtcgagttt caccagctgc gtgtaaagcg gcagaatcat aaacggcaga taggcataaa
     2701 ccatcaccag gtttaacgaa aacgcattgt agaacaaatc taatggctcg ctgataatac
     2761 ctattttaat caacatattg ttgacgatgc cgttgtgccc gagcaggccc atccacgcat
     2821 agacgcgcaa taggaaagat gtccaaaagg gcagcataat ggcaagcagc aaaccattgc
     2881 ggacagaagg attggcacga gaaatcgcat aggcggtcgg ataaccgacc aacaggcaaa
     2941 tcactgtcgt catcaatgcg gttttgattg aagaccagta ggtcatcaga tagatattgc
     3001 tgttttcact gtcgccgaac gggttaaggg tatgccaaaa attttggaaa atatcggcat
     3061 agttttgata actgatggcg atattcagac gacctaaatc ttcgtcgatg ctggtcagcg
     3121 gcgtaaacgg cggaatggcg atttcttgtt cggcaaagct gattttcagc acgatggcga
     3181 acggaatcag aaacagcacc aaaagccaaa tatacggtac ggcaatcacc gcacgctgcc
     3241 ccggacggcg gaacagtttg tttttcagtt tattaaggtt cattgcattc cccttaaatc
     3301 aacggaacag tggcgtaggc tggttttccg gccagctgat atagacggtt tcgtcccaag
     3361 ttggcggtgt aatgttgcgc acataccagt aaggggcggg gacttggctc ttgacgacgc
     3421 gcccgttggc gagtttgata tggtatatgg cgaagctgcc caaataggcg atttctttta
     3481 ccgtgccttt cgcccagttg tagtcgccca aatattcggg tttttcttta tataaatcaa
     3541 tatcctctgg tcgaatacta acccaaaggt cctgctcgct cggaccaccc aaaccgtggt
     3601 cgatgcggac gtggttttcc aaaccttcgc attcgataac ggcatagtcg gcatgatctt
     3661 caatcaccac accgtcaaaa atattggttt cgccgataaa ctcggcagtg aagcggctgt
     3721 tgggatagtc gtacacgtcg ctgggtgtgc cgacttgctg caactgaccg tcggacataa
     3781 tggcgatgcg ggtcgccatc gtcatcgcct cttcttggtc gtgtgtaacc ataatacagg
     3841 ttacgccgac ttgttccagc gtattgacca actcaagctg ggtttgttgg cgcagttttt
     3901 tgtccaacgc gccgaggggc tcatccagca gtagaatttt cggacgtttt gccagactgc
     3961 gtgccaaagc aatgcgctgt tgctgaccgc cggacaattg gtgcggtttg cgtttagcaa
     4021 atttagtcat ctgaaccagg cggagcattt cttcgacgcg cgcggcgatt tcgcctttag
     4081 gcattttgtc ctgtttcaga ccgaaggcaa tgttttgttc tacggtcata tgcggaaaaa
     4141 gcgcgtaact ttggaacatc atattgatgg ggcgatcata gggtgcaagt ttggtaatat
     4201 cctgaccatc aaggataatt tttccctgat tgggactttc catacccgcc agcatacgca
     4261 gcagcgtgga ttttccgctg ccggaactgc ccaaaagagc gaaaatttcg tgttgataaa
     4321 tgtccaagtc gatgttatcg acagcgtaat tgtcaccaaa ctttttcacc aaaccttgga
     4381 tttgcagata aggcttggtt gaagacgcag tggttgcggt cataatggca atactccaat
     4441 aaaaagacga gtaccggcaa aacggatgtt cgaatgggtg ataaaaagct gtttgattgc
     4501 tggcgggagt taaacgtttg atgccgtctg aaactcttgt aaagcgcacg ggcagcatga
     4561 aatggaacaa gattccaaag aactttatat tatattagtt tatgcggttt tcgggcaata
     4621 tagtggatta aatttaaacc agtacagcgt tgccttgcct tgccgtacta tttgtactgt
     4681 ctgcggcttc gtcgccttgt cctgatttaa atttaatcca ctataaatat ggatttgagc
     4741 ttgtcggaaa gcaacagaaa agaaaacacc gcccattttt ctgggcggtg tcggaaagcg
     4801 taattattta cgcagaccca agcgggtaat caacgcgcga tacgtatcgg gctgggtacg
     4861 gcgcaagtag gccagcaggc ggcggcgttg gctgaccatt ttcaacaggc cgcgacggct
     4921 gtggtggtct ttggggttgg ctttgaagtg gggggtcagg tcgttgatgc ggaaagtcaa
     4981 cagagcgact tgtacttcgg aagagccggt gtcgccttct ttgcgttgga aatctttaac
     5041 gatttgtgct ttttgttcta cggtcagtgc cataatgaaa actccaaaaa tataagaatc
     5101 cccataggga ttcagacaag tttgccaagc ctgaagacaa cggcaaactc cctatgccca
     5161 agataggaca acgtggcatt atgacacaat tcccgcattt ctgcacaata ttttaagacc
     5221 gtggaagtaa ccgttaaaaa tgccgtctga agcattgtct gcttgagacg gcaatgttca
     5281 gacggcatat gcgcttcaaa ccacgatttc ttctttcttc ttcggttctt taccgatatt
     5341 gtcgcggctc aaaccgaaca ttagcagaag cgggctggca accaatacgg aagaataaat
     5401 gccgaacacg atgccaatgg tcaacgccat agaaaagccg tgcaaggccg caccgccgaa
     5461 caccagcatg gatacgacca tcgcctcggt cgaaccgtgg gtaatgatgg tgcggctcat
     5521 cgttgcggta atcgcgttgt cgatgacttc cggcacagca tgtccgcgca tcgccggctt
     5581 gcggaagttt tcacggatac ggtcgaagac gacgacggat tcgttcacag aatagcccaa
     5641 tacggcaagg atacccgcca agacggtcag cgaaaattcc cattggaaga aggcaaagca
     5701 gccgagaata atcacgatgt cgtgcatatt ggcgataatg gcagatacgg caaaacgcca
     5761 ttcaaaacgc atcgacaggt aaataatgat gccgataacg acaaaaccta aagccatcaa
     5821 tccattactt accaattcct caccgacttg cgggccgata aattcgactt ggcgcaaggt
     5881 aacgtcggga ctgtcttttt tcagcaaatc cataacctga ttggacaact gtgcggaagt
     5941 aacaccttct ttgttcggca ggcggatcat gatgtgtttg ttcgtaccca atgcctgaac
     6001 ctgtacatca cctattttca gcgtatcgag gcgttcgcgc atcttattga catccgcacc
     6061 ctgctgatat tggacttcca ttaccgtacc gccggtaaat tcgacagaga aattcagacc
     6121 tctggtaacc aaaaagaata cggcggcaat aaaggtaacc aacgaaataa aggtcgtcag
     6181 tttgccgtag ctcataaacg gaatatcgcg tttgatttta aagagttcca tagcttactc
     6241 cttacctgcc gcagtttcgg cttcaggttt ccataccgca ccgatggaaa tattctgcaa
     6301 tttgcgtctg cgtccgtacc acagattgac caacgcacgg aatacgacga cggaggaata
     6361 catcgaagtc agaataccca aacagtgtac gaccgcaaaa ccgcgtaccg ggccggaacc
     6421 gaataccaaa agcgcgatac cggcaatcag cgaagtcagg ttggaatcga caatggtcgc
     6481 ccatgcgtgt tggaaaccga gattgattgc ctgctgcggc ggcacgccgg cacgcaattc
     6541 ttcgcggata cgttcgttaa tcaagacgtt ggagtcgatt gccataccca aagtcaacgc
     6601 cagcgcggcc atacccggta acgtcaacgt tgcctgcatg gcagacaaaa taccgattag
     6661 gaacagtatg ttggcactca atgcaatggt agaaaagaaa cccatcagac gatagtaaac
     6721 caccatgaat gcagcaacga tggcaaaacc ccataaagtc gaatggaagc ctttttcgat
     6781 gttctcctta cccaaagacg gaccgatggt acgttcttcg acaatctgca tcggcgcggc
     6841 aagagaaccg gcacgcaaca gcaaagacgt atcattggct tcggctgtcg tcatgcttcc
     6901 ggaaatttcc acgcgtccgc cggtaatggc agtacggata accggcgcgg ttacaacctc
     6961 ggattttcct tggtcgatca aaaccatcgc catgcgtttg ccgacatttg cggcagtcag
     7021 ttcgccaaaa atgctgccac ccgcgctgtc caagctcaga ctgacggcag gtgcgcccat
     7081 ttggtcgaaa ctcggttgcg catcgttgat gttgtcgccc gtcagctcga cctgtttgct
     7141 gattagcaga gtttcgggac gatctccgcc gcttgaaagc agctcataac cgctcggcac
     7201 gttgccttcc aatgcctcgc gcaacttggc aggatcgtcc tccaccatac gcaattccaa
     7261 agtcgcggta cggccgatga tgtcttttgc cttggcagta tcctgaacgc ccggaagctg
     7321 cacgacgata cggtcggcac cggactgctg gatgacgggt tcggccacgc ccaactcgtt
     7381 cacacggttg tgcagggtag tgatgttctg tttgaccgca tcggaacgca ctttattgac
     7441 cgcctcttcc gaaagtgtca agacgatatt gctgccgtct gaattcagcg ttgcttcagg
     7501 aaacagcttg cgtaactgcg gcagtgcctt ttgcacatca cctgcatcct gcaaagggac
     7561 ggtcaggctg tttccagcct gacgcaccgt gccgctgcgg attttttcgc ggcgcagttc
     7621 gcggcggatg tcgcccgaat aacgttcaaa cgttttctgc atcgccgctt tcatgtccac
     7681 ctgcatggtg aaatgcacac cgccgcgcaa gtccagaccc aaaaacatcg gattggcttt
     7741 gattttcgcc atccactcag gactgtctgc caaaaggttg agtgcggtaa tataaccttc
     7801 gcccaaagta ttttcgatga cgtcgcgcgc tttaagctgc gtttcggtgt ctttgaaacg
     7861 cactttcagt gaattgtcca caacaaacat cccgtcggtc tgaatacccg cgttttgcag
     7921 cgcggcatcc actttggatt gagtctgttc gttgatgatg atggcttgtc ggttggtcga
     7981 tacctgcacg gcgggtgttt cgccgaatag gttgggcagc gaatacactg cggcaaccgc
     8041 aatcgtgaac acaatcagca gatatttcca taaaggataa cggttcatca ttgttcctta
     8101 atggttggaa ccccaccctt tcggtggtgt cggaatcggg ctatttcaga agaggcaaaa
     8161 acccttccca gccaggcaag accggaaagc ggcatcctga atatgccgcc ctgcgtgtcg
     8221 gaacatggtc aagccttcgg ttggaattca aaacaaagtg ccgcattcgg gcttttccga
     8281 tgcggcttgt cggcacaaat caatcgactt ttgcggcaat cgcattgcgt tctacttcga
     8341 cctcgatttt tgtaccctgt ccgatatcca cggtaaaaaa ctgttcgccg actctggtta
     8401 ccttaccctt gaaacctgcc gccaagacca ctttgtcgcc gactttcaag gcggcaagca
     8461 ttgcctgatg cgctttgaat ttcttttgct gcggacgcat gatcaggaag tagaacacca
     8521 ccataatcaa cactaaagga gcaaattgtg caacagcttg attcataatt tatccgttct
     8581 ttctaatatg gttgaaaatc gagaggggta tataataaca taagaccgta aacaatatat
     8641 cgggtttgcc gtccgtaccg accgtatacc gcagcctgcc cgtccacaaa cccatgtcct
     8701 tgacccgcct aatcttgaaa ttctatgcac tgttgcgcct ttttttgggc aaaaacgccc
     8761 gcaccgcatg gatttcgcat cccgcctgtg ccgggcacga acccggcgca aaccatcccg
     8821 attcgcccga ccgcatcctc tgcatcgagc aggcattgcg ccgcgccggt atttggcagc
     8881 acctccaaac catagaggcg gaagaaatca gcgatacgcg cctcgcactt gtccactcga
     8941 gcaaatatct gaaccgtttg gaatcttgcc tgccccaaaa aggcaagatt tcccgcctgg
     9001 ataacgacac tgcaatcagc acaggctcgc tgtctgccgc acgctttgcc gccggttcgg
     9061 cagttcaggc agtcgacatg gtcatgaacc gtaaagcatg gcatgccttt tgcgccgccc
     9121 gcccgcccgg acaccatgcg ggcagcggca aagccggcgg attctgcctg ctgaacaacg
     9181 ttgccgccgg cgtcatgcat gccattgccg aataccgcct gaaacgcatt gccgtcatcg
     9241 atttcgatgt ccactacggc gacggtacgg cagaaatatt caaagacgat ccgcgcatcc
     9301 tgtttttcaa cctatttgaa accgaccttt tccccttccc cgaaaacaac gatatgcccg
     9361 acggcggcaa tatggtgcac ctgcccttgc cgccgggaac gggcagccgc acattccgcg
     9421 aagccgtccg caggcagtgg ctgccccgac ttgccgcatt caaacccgaa ctggtgctgc
     9481 tgtcggcagg attcgacgca caccgtctag acgaatcggg caggctcaac ctgcacgagg
     9541 cggattttgc ctggctgaca cacaaaatca ttcagacggc atcgggctgc cccggcaaaa
     9601 tcgtatccgt actcgaaggc ggctacaccc ttgaacctct ggcacaatct gctgccgagc
     9661 atatccgcgt gctggcaggg ctgggcaaat ccgatgccgc aaccgcctat cagaaaacac
     9721 tggacccaac aaaaaaacgg tttgccaaac cgaaaaccgg acaggtgcgc caacctaccc
     9781 aatccgaccg ttac
//
LOCUS       DAWGNT010000060         9770 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.060, whole genome shotgun sequence.
ACCESSION   DAWGNT010000060 DAWGNT010000000
VERSION     DAWGNT010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9770
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.060"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..222
                     /gene="rdgC"
                     /locus_tag="WHR98_001050"
     CDS             <1..222
                     /gene="rdgC"
                     /locus_tag="WHR98_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HEZ2307739.1"
                     /translation="TQLGLVWREQIAFILTQDFTLKRIQYLDVLQEEAESNGDDAASL
                     AFASQILMAESVSTMLEELVSYLGGWEQE"
     gene            466..1047
                     /gene="umuD"
                     /locus_tag="WHR98_001051"
     CDS             466..1047
                     /gene="umuD"
                     /locus_tag="WHR98_001051"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HEZ2307740.1"
                     /translation="MDDIPKKRGGRREGAGRKSKSGEATAVKRIPISLIPTVDAMIAS
                     TAMPQGSLIPINRTTLKVPYTLEKIPAGFPSPAEPYIADYLDFNEYLIANPSATFAAR
                     SGGYSMLDAGISKDDIMIIDRSKTPKHGDIVMADVGNEFTIKRLYKIPGRKPELHSEN
                     SSGEYPDFIPNDSDTWTVVGVVTFVIKDVRQGS"
     gene            1049..2299
                     /locus_tag="WHR98_001052"
     CDS             1049..2299
                     /locus_tag="WHR98_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HEZ2307741.1"
                     /translation="MFALIDGNSFYCSCERVFRPELKNIPVVVLSNNDGCVVARSAEA
                     KALGIKMGEPYFKVRHLVGQGRLKAYSSNYELYADLSRRMMETIAGCVPAVEVYSIDE
                     CFADMTGIENLAVHGQQIRSRVLQWVGIPTCVGIAPAKTLAKFCNHLAKRYPDYFGGV
                     VVWDNWNETTRLRALRSQGVDEILGIGRRTADKLSEQGIRTVLDFVEADTATIRRRYG
                     VTVERTQREMQGIVCDGLHLNAQPRQNLVRSRSFGKRIGTLEALQAAVTHHVSSGAEA
                     LRKDGLTASAVSVFLHTDFFREDSPQYHNSLAQNLIVSTADTVHLNRIAQRLLADIYR
                     SGYLYKKCGIELYDLKPAIQIQADLWKPTKANPAMEAWDKINRQHGRGSMKLVSELLA
                     DDWKMNRDRLSQCYTTRFTDLLVV"
     gene            complement(2606..3055)
                     /locus_tag="WHR98_001053"
     CDS             complement(2606..3055)
                     /locus_tag="WHR98_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YhaV family
                     toxin"
                     /protein_id="HEZ2307742.1"
                     /translation="MPDSPMQINGYTIYEHECFTQQLDRLATTIESQKRSEKSSRSEE
                     TKLLERILDEIENIALNPDSPEYRLGKTLGSEYKFWRRAKFMGRYRLFFRYDSNSKII
                     ILAWVNDSGTKRTYGGKNDAYTVFKKMLGNGNPPSDWTALLEVVSKE"
     gene            complement(3057..3368)
                     /locus_tag="WHR98_001054"
     CDS             complement(3057..3368)
                     /locus_tag="WHR98_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PrlF family
                     antitoxin"
                     /protein_id="HEZ2307743.1"
                     /translation="MKIIFDAVSTMTSKNQTTIPESVRKALGLEKQDKIRFSVLGDGQ
                     VLLEKNNTEEEEFEHDPVVGKFLHFLENSMTKNPNSIKPTSQSRFNRFRQLTWETDMK
                     D"
     gene            complement(3755..4237)
                     /locus_tag="WHR98_001055"
     CDS             complement(3755..4237)
                     /locus_tag="WHR98_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307744.1"
                     /translation="MIDNQIDKEVTQASCEARFILKQENGKRILYLNLPDGSDELNTI
                     WQTDEYDFTVPDLEVSIDVESLYTAVRLLNENQGILHSISAKCSADSFGFEGKLRYER
                     LDVKPFPIKSFSYYLEFYNDWTGTLYELDLSAFLDEFFGECDPESKLDACLKQHLCLK
                     "
     gene            complement(4324..5103)
                     /locus_tag="WHR98_001056"
     CDS             complement(4324..5103)
                     /locus_tag="WHR98_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003693165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307745.1"
                     /translation="MPNWCSNSLHFQGNPERIAEVAEQILVKTDKGYQFSFQHIVPMP
                     EELNLTKGSDSHMQQTWLQIAQQPEKKLTNLEQEMLEQRDEPFWPVQYRLPDELFSEL
                     KQYFSEKFVWDNLTVGEVLAHFAESPEVTTRFRYDEPFVKRIAENIRQYGHPDWYDWR
                     LANWGCKWDLDPDCTFVTVEESDIWISCDTAWGPPDRLYKEIAKRFPDVEFEAKYLEE
                     GMWFAGSYEGHEGVLFDYPCEEDEVRDFAIEHFGCEYDDDD"
     gene            complement(5416..5655)
                     /locus_tag="WHR98_001057"
     CDS             complement(5416..5655)
                     /locus_tag="WHR98_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307746.1"
                     /translation="MPDNMKSKTKVPTAVLASWAAILDDIAKAAIIGIGVVVWSNGYS
                     EEMKNLAMAGLVLLSFEMLYVSFLIRIHISKLEDK"
     gene            complement(5806..6321)
                     /locus_tag="WHR98_001058"
     CDS             complement(5806..6321)
                     /locus_tag="WHR98_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307747.1"
                     /translation="MSTKVDNIFLIEGSKESVAEAAKLILFRSHAYPEHRAFDFDRIV
                     PLPENITSDLTKQRIEAWGSSFSPCPTETFVTQREGFIEICFLTGLAPPFGIYRKLAE
                     IFANLDVCFTAKYINQYGSFGGRYEYRNSVLYHCLCEMADIRKFGIAEFDIWYEGLSD
                     RLESDGYLVED"
     gene            complement(6406..6993)
                     /locus_tag="WHR98_001059"
     CDS             complement(6406..6993)
                     /locus_tag="WHR98_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307748.1"
                     /translation="MQNFIVWMNPDREESAAAAAKLNGAVLTAHTDGVMVAIRRELKR
                     FGLGADLAVFAQTCEEFAKQANADMVCISSSNGDAVAAVTYLEDGYVGEGVSAVADMR
                     YLMSAYRQYFNRPDKMVIFQGALQYLSDEDIAWIFRRHSNAIIEWQSNEGLGLYEFGF
                     SLSDVLTDGCRNVLREVVTGWLHREILPVLCAEPT"
     gene            complement(7221..8015)
                     /locus_tag="WHR98_001060"
     CDS             complement(7221..8015)
                     /locus_tag="WHR98_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307749.1"
                     /translation="MFPDRRISPFSKGNIVSVSKYFMLRPSAMDWDFIEKHYPNYYRS
                     NAILKSDDMSYCLGDMGDVPRDTVITEESYKAFEEYAEDLAYRVENGFADFIGSSLTF
                     GQAADYFDDWLYAVAVLEGVGCIQVSEAVRFWAEKVFNTPAEKRRQWYAGRLSSDPKP
                     SDAERLLIEVANYIALKYGLVFGENGESVLDVSENILQAHLYHEADPGFSFFLKSDQF
                     GLSVFGSSRYFPLQSIVISNEMPIAAAQTLIDILISGSAPNTVVSG"
     gene            complement(8041..8628)
                     /locus_tag="WHR98_001061"
     CDS             complement(8041..8628)
                     /locus_tag="WHR98_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307750.1"
                     /translation="MQTYIITMDMENELSEAAVSALNGRFFTCPQNYQAIWDQVSDYL
                     SDKGFPHGIAQDVFEAVEYFTQNFHSENWPSKDLNLFAAAVSVEHAVEDQGCADLLHL
                     LRNKDDVEASFEDYVQDLTGKDLQWVYGRNRDAVNHWLAESRTDLFDLLESQENLAEV
                     VTVLWAKALLGKYFDKYGRNIPSSSQLEADEAVSA"
     gene            complement(8736..9542)
                     /locus_tag="WHR98_001062"
     CDS             complement(8736..9542)
                     /locus_tag="WHR98_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307751.1"
                     /translation="MGNGIPFFRSNTVEKNIETYIVWFKKEFEVAGKAAEVLNGQVIC
                     YPSNDESLTDKIGCKLAELGYSANLISAIVPVDEYVRMENEMGSVPNMTENCHTAAVS
                     FSVMNDHDAWTALLRQPGFADMLTDDQAQEVFQSIMRGRDVGYSMLMEAVFDSGIPDN
                     DCFVLVPVPQIAGYDDIAYLLKDVEYGPSDHIEFLEQVVSEKTAAWLFERNEETVLQW
                     MEENGLNWGNFTDLNTSRPESKGKVIHKAIKSWAIDTVRRYLNSHPLQNS"
BASE COUNT         2693 a         2265 c         2240 g         2572 t
ORIGIN      
        1 acccaactgg gcttggtgtg gcgcgaacaa attgccttta tcctcactca agacttcaca
       61 ctcaagcgca tccaatacct cgacgtattg caggaagaag ccgaaagcaa cggcgacgat
      121 gccgccagcc ttgccttcgc ctcgcaaatc ctgatggctg aatccgtcag caccatgttg
      181 gaagagctgg tttcctattt gggcggctgg gaacaggagt aaagaacgaa cgcgccgacg
      241 atttggcaaa ccgtggcgcg tttgaaagga tatgaataat gtttctaaca gttacttctt
      301 tagtctcaat cgcgcccacg acttccttaa attaaaacca atcgtcaaat tcaaatccca
      361 taagcccaca atcgggctta tgtatgaaaa caatggctgt ccggatagac gcgacagcct
      421 ttttcctgtt aagatgattt cgttacaaat tcaaaatata ataccatgga tgatattcca
      481 aaaaaacgtg gaggacgtag agaaggagcc ggtcgaaaaa gtaaatccgg cgaagcaacg
      541 gcagtaaagc gtattccaat atctctgata cctaccgttg atgcaatgat tgcttctaca
      601 gccatgcctc aaggcagcct tatacccatc aatcggacaa cactaaaagt cccttatact
      661 ctcgagaaaa tccccgccgg attcccatct ccggcggaac cgtatattgc cgattatctt
      721 gatttcaacg aatatctcat tgccaaccca tctgctacct ttgcagctcg ttccggcggc
      781 tactccatgc tagacgctgg gattagcaaa gacgatatta tgattattga ccgatccaaa
      841 acgccgaaac atggcgatat tgtgatggcg gatgttggta acgagttcac aattaaaagg
      901 ctatataaaa taccaggacg caaacctgaa cttcattcag aaaactcttc cggcgagtac
      961 cctgacttta tacctaatga cagtgatacc tggacagtcg ttggtgttgt tacctttgtt
     1021 atcaaagatg ttcgtcaggg aagctaagat gtttgccctt attgatggga acagctttta
     1081 ctgttcttgt gaaagagttt tcagaccgga attgaagaat atcccagtcg ttgtcctgtc
     1141 aaacaacgac ggctgtgtgg ttgctcgttc tgctgaagca aaggcactcg gcatcaagat
     1201 gggcgaaccg tatttcaaag taagacattt agtgggacaa ggccgtctga aagcttattc
     1261 gagcaactac gaactctatg cagacctgtc ccggaggatg atggaaacta tcgccgggtg
     1321 tgtgccggca gttgaagtct attctattga tgaatgtttc gcagatatga ccggcattga
     1381 aaatcttgct gtacatggac agcaaattcg cagccgtgtt ttacaatggg ttggcatacc
     1441 aacttgcgtt ggcatagcac cggctaagac gctggccaag ttttgtaacc atctcgccaa
     1501 acgttatcct gattactttg gtggagtagt ggtttgggat aattggaatg aaactacccg
     1561 tcttcgtgcc ttgcgcagcc aaggagtaga tgaaattttg gggataggta gacggactgc
     1621 cgataaacta tctgaacaag ggatacgaac agtattagac ttcgtagaag cggatacagc
     1681 caccatacgc cgacggtatg gtgtaacagt ggagcggacg caaagagaga tgcagggtat
     1741 tgtctgtgac gggttacatc tcaatgcaca accgagacaa aaccttgttc gtagtcgaag
     1801 ttttggaaag cgtatcggaa cattagaggc attgcaggcg gctgttacgc atcatgtcag
     1861 ttcaggggct gaagcattgc gtaaggatgg tttaactgct tccgccgttt ctgtattctt
     1921 acatacagat ttttttcgtg aggattcgcc acaataccac aacagcctag cccagaattt
     1981 gattgtatca accgctgata cagttcattt gaaccgaata gcacaacgac tgctggcaga
     2041 tatttatcgc agtggatacc tctataaaaa atgcggaatt gaattatatg atttgaaacc
     2101 agctattcaa atacaggcag acttatggaa accgacaaaa gccaatcctg ccatggaggc
     2161 atgggataaa atcaaccgtc agcacggtag aggcagtatg aaattggtct cagaattact
     2221 ggccgatgac tggaaaatga acagagatag attaagccag tgctatacca cacggttcac
     2281 ggatttgctc gtagtctaag gatataattt ccccaaaaca tccacaaaat atgtggataa
     2341 cattttgaac agattaaaga ccgctccgtg acggtctttg tgaaaataag gtgactgtag
     2401 tttagtcagc taagtcctca gattcgacaa gtattaaata aaatggaaaa ttgcgacaaa
     2461 tatattctca aaaaattctt cattgcttac cgaattgaat ttaatgcgga gaaacaatat
     2521 cagcgggaaa aggagcggta agcaagggat agtataaaaa gagcaacagc ccatgagaat
     2581 cttctaaggg ctgttttctt ttgctctatt cctttgatac tacttcaagc agtgcagtcc
     2641 aatctgaagg aggatttccg ttccccagca tttttttgaa cacagtatat gcatcatttt
     2701 tgccgccata agttcttttc gtacccgagt cgtttaccca tgcgagaatg atgattttac
     2761 tgtttgagtc gtaacggaaa aacaatcggt atctacccat aaacttggca cgtcgccaaa
     2821 atttgtattc cgagccgagt gtcttgccaa gtcgatattc cgggctatcc ggattaaggg
     2881 caatattttc tatttcgtct aagattcgtt ccagcagttt ggtctcttcg gatctactgg
     2941 atttttcgga tcgtttctgg ctttctatcg tagtggccag tctgtctaat tgctgcgtaa
     3001 agcattcgtg ttcgtaaatg gtatatccgt ttatctgcat aggggaatca ggcatattag
     3061 tctttcatat ctgtttccca agtcagttgg cgaaagcggt taaaacgtga ttgagatgtg
     3121 ggtttgatgg aattcggatt ttttgtcata gaattttcca aaaaatgcag gaattttcca
     3181 acaactggat catgctcaaa ttcttcttcc tcagtattgt ttttttctag caatacctgt
     3241 ccgtcgccta agacggaaaa acggattttg tcctgttttt ccagccccaa tgccttgcgt
     3301 actgactcgg gaatggttgt ttggtttttg ctggtcatag ttgacactgc atcaaaaata
     3361 atcttcatgg tctctttgcc ctgccttcat tcaaatttac tgttgctact tgcgacttca
     3421 atgtcctagt tacgcacatc ttcaacttaa cggcttggga aattattgat attgttaaaa
     3481 actgcttaaa ttaaggaatt ctgtttattg taaggaaatt tccttacaga gtcaataccc
     3541 aaccccttcg acctgtaagg gcgtttatga ataccccatt tgctgactgg cagcgatgac
     3601 acgcttaagt gagggagcag gcgtagaccg gaggtaattc ctgttcccga gctgtcggcg
     3661 gcgagaccgg gggattgggg gcagagaccc caaaaatatc agagtatggg cacaaaaaaa
     3721 cggccgcatt agcggccgtt ggttttgaaa aagattattt gaggcacaaa tgctgcttca
     3781 aacaggcatc gagcttggat tcaggatcac actctccgaa aaactcatcc aggaacgctg
     3841 ataagtccag ttcatacaac gtccccgtcc agtcgttata aaactccaaa taataagaga
     3901 acgatttgat agggaaaggc tttacatcca atctttcgta tctcaacttt ccttcgaaac
     3961 cgaacgaatc cgcactgcat tttgcgctga tgctgtgcaa aatgccctgg ttttcgttca
     4021 aaagtctaac agcagtgtaa agggattcaa catcgatgct gacttctaag tcgggtacgg
     4081 tgaagtcata ctcgtccgtc tgccaaatgg tatttaattc gtcactacca tcgggcaggt
     4141 taaggtaaag gatacgtttg ccgttttcct gttttaggat gaatcgtgct tcacatgaag
     4201 cctgagtgac ctctttgtca atctgattgt caatcatttc taatctccat aaatagcggg
     4261 agacaaccct gcgggttgtc ccccagggtg acttgccaat acgtctaacg aaaactaagt
     4321 tttttaatca tcgtcatcgt attcgcatcc aaagtgctcg atagcgaaat cacggacttc
     4381 atcttcttcg caaggataat cgaacaacac gccttcatga ccttcatagg aacccgcaaa
     4441 ccacattcct tcctcaaggt atttagcttc aaattccacg tcgggaaaac gtttggcgat
     4501 ttctttgtaa agcctatccg gaggacccca ggcagtgtca cagctgatcc agatgtcgct
     4561 ttcctcaacc gtcacaaaag tgcagtcggg atctaagtcc catttgcagc cccagttagc
     4621 caaccgccag tcataccaat ccggatgacc gtattggcgg atgttttccg caatacgctt
     4681 gacaaatggt tcatcgtaac gaaaacgagt tgtgacttca gggctctctg caaaatgggc
     4741 caatacttca ccaacagtca gattgtccca aacaaatttt tccgaaaaat attgctttaa
     4801 ttcggagaaa agttcatccg gcaatctata ttgaacgggc caaaagggtt catcgcgctg
     4861 ttcaagcatt tcctgttcca aattggtcaa cttcttttca ggttgttgag caatttgaag
     4921 ccaggtctgc tgcatgtgac tatcagaccc tttagtaaga ttcagctcct ctggcatggg
     4981 tacaatatgc tgaaagctga attgataccc cttgtcggtt ttgaccagaa tttgctccgc
     5041 cacttcggcg atacgttcag gattgccttg aaaatgaagg ctgttgctgc accagttggg
     5101 catagtagtc tccagagcag gaatccccat ccctgcggat aaggaaaccc gcaggttgat
     5161 gggcttgcgc ccaggttgat aaaaaagtcg ccaccggaaa ccggcgcaca tttcagacga
     5221 caggtgcttt agataaaagg caaagaaacc gaaacggtaa ctttgccttt gggaagcgga
     5281 acgacggttc cgccggcttg atgaaaaatg tgcttaagca cggttatttt ttgggggttt
     5341 taagatagat tctcgcaaca ataacaagaa ccaggccgac tgcggccatg acccaagttc
     5401 cggtaacgaa gtccattatt tgtcctccag tttagagatg tgaatgcgga taaggaatga
     5461 aacatacagc atttcaaacg acaggagcac caatcctgcc atggcaagat tcttcatctc
     5521 ctcactatac ccgttactcc agaccaccac accgataccg ataatcgccg ctttggcaat
     5581 atcgtccagt atggcggccc atgaagccag taccgcagtg ggtacttttg ttttcgattt
     5641 catattgtca ggcatataca cctccataaa aaaaggagat gtacgcctga cggggaatac
     5701 atccccttca gggttgataa aagagccgtg catccgaaac ggatgtgcat ttggttaacg
     5761 gcggtatgcg ggcagtttga cggactgccg accgtgtaac atagtctaat cttctaccaa
     5821 atacccgtcg ctttcaagtc tatcggacaa gccttcgtac caaatatcga attcggcgat
     5881 accgaattta cggatgtcgg ccatctcgca aagacaatgg taaagcacgc tgttacggta
     5941 ttcgtagcgt ccgccgaaac ttccgtactg gttgatgtat ttcgctgtaa aacatacatc
     6001 caagttggcg aaaatttccg cgagtttgcg ataaataccg aaaggcggtg ccaatccagt
     6061 taaaaagcag atttcaataa aaccctctct ttgtgtaaca aaggtttcgg tgggacatgg
     6121 ggaaaaactg ctgccccatg cctcgattct ctgtttggta aggtcagacg tgatattttc
     6181 gggtaaaggt acaattcgat cgaaatcaaa agcccgatgc tcgggataag cgtgggagcg
     6241 aaataatatc aatttcgccg cttcggcaac cgattctttg gaaccttcaa tcagaaagat
     6301 gttgtcaact ttggtggaca taatcgtctc cgggcgggta ttgcccctgc gggcagaaac
     6361 ccgcaggtta agggcttacg cccggttgga aaagaagcac ggcagttatg tcggctctgc
     6421 acacagcacg ggcaggattt cgcggtgcag ccagccggtg acgacttctc gcagcacatt
     6481 gcggcagcca tcagtcagaa catctgatag actgaaaccg aactcgtaca gtcccagccc
     6541 ttcattcgac tgccactcga tgatggcatt gctgtggcgg cggaaaatcc aggcaatgtc
     6601 ttcatctgat aaatactgca atgccccctg aaaaataacc attttgtcag gacggttgaa
     6661 atactgccga taggcagaca tcagatagcg catgtcggca acggcggata cgccttcacc
     6721 aacgtatccg tcctcaaggt aagtgacggc tgcaacggca tcaccattgc tactgctgat
     6781 gcaaaccatg tcggcattag cctgtttggc aaactcttca caggtttggg caaagacggc
     6841 caaatcagcc cctaatccaa atcttttcag ttcacgtcta atagcgacca tgacaccatc
     6901 cgtgtgagcg gtcaaaactg caccgttcaa tttagctgcc gcagctgccg attcttcccg
     6961 atcgggattc atccatacaa taaagttttg cattgtgttg ctccttaata aagaaaacgg
     7021 agaacacagt ctgtagggat tgtgttcccc acggggctga taaaagaaaa tgccgtacac
     7081 cccgaaggat gcgtgtcatg tttaacggca ggacacaaga cagataaggt ctgtcagcct
     7141 gtaaagacag gtatttttag acggctttca agtaaagtct tctaaaaata cctgccaaaa
     7201 ggcaggtaga agttacgatt tcaaccggaa accaccgtat tcggtgcact tccggaaatc
     7261 agaatgtcaa tcagtgtctg tgcggctgcg atgggcatct cgttgctgat cacaatactc
     7321 tgcaacggaa aatacctgct tgagccgaat acagacaggc caaactgatc ggatttgagg
     7381 aaaaaggaaa agccgggatc tgcttcatga tacaaatggg cctgaaggat gttttcagaa
     7441 acatccaaaa ccgattcgcc gttttcgcca aagaccaaac cgtatttcag ggcaatatag
     7501 tttgccactt caatcaacag acgttcggca tcagacggct tgggatcaga cgacagtctg
     7561 cctgcgtacc attgcctgcg cttttctgca ggtgtgttga agactttttc agcccaaaag
     7621 cgtaccgctt cgctgacctg gatacagcct actccttcaa gaacggcgac ggcatatagc
     7681 caatcgtcga aataatcggc tgcctggcca aacgtcagac tgctgccgat aaagtcggca
     7741 aagccgtttt cgacacgata ggcaaggtct tcggcatatt cttcaaatgc cttataactt
     7801 tcctctgtaa ttactgtatc gcggggaaca tcccccatat ccccaagaca gtaactcata
     7861 tcgtccgatt tgaggatggc gttgctgcgg tagtaattgg gatagtgttt ttcgataaag
     7921 tcccagtcca tagcggacgg gcgaagcatg aaatattttg aaacagacac gatatttcct
     7981 ttagaaaaag gggatatgcg cctgtcgggg aacatatccc cgtggggttg aaaattaggt
     8041 ttatgctgat acggcttcgt cagcttccag ttgtgaactg cttgggatat tacggccata
     8101 tttgtcgaaa tactttccca atagggcttt ggcccacaaa acggttacaa cttcagcaag
     8161 attctcctgt gattcgagta ggtcaaagag gtcagtcctg ctttcagcca gccaatggtt
     8221 gactgcatcg cgatttcgcc cataaaccca ctgcaggtct ttaccggtca ggtcttgaac
     8281 ataatcttcg aaagatgctt ccacatcgtc tttgtttctc aacagatgaa gcagatcggc
     8341 gcagccttga tcctcaacgg catgctctac cgatacagcc gccgcgaaca agttaaggtc
     8401 tttggacggc caattttccg aatggaagtt ttgcgtgaaa tactcgaccg cttcaaagac
     8461 atcttgggca ataccgtgtg gaaagccttt atcggacaga taatccgata cctgatccca
     8521 aattgcctga taattttgtg gacaggtaaa aaaacgtccg ttcaaagcac tcacagctgc
     8581 ttcagacagt tcgttttcca tatccatggt aatgatgtag gtttgcataa gaaatactcc
     8641 caaaaaaaac gggactgccg tccagaaggg cggtcagccc ctcggggttg aaaaaaggaa
     8701 cggatattcc gttctgcata tttaggttac atggtttaag aattttgcag aggatggctg
     8761 ttcaaatacc gtctaacggt atcgatagcc cagcttttga tggctttatg gatgactttg
     8821 ccttttgatt ctggtcggga ggtgttcaaa tcggtgaaat tcccccaatt taagccgttc
     8881 tcctccatcc attgaagcac ggtctcttcg ttccgttcga acagccaggc agccgttttt
     8941 tctgaaacaa cttgttccaa gaattcgata tgatcggacg gaccgtattc cacatcttta
     9001 agcaggtagg cgatgtcgtc gtaaccggca atctgcggaa caggaaccag cacaaagcag
     9061 tcgttgtcag gtatgccgct gtcgaaaact gcctccatca gcatactgta accgacatca
     9121 cgacctcgca taatgctttg gaaaacctcc tgagcctggt catctgtcaa catgtcggcg
     9181 aaaccgggtt gacgcaacaa tgccgtccac gcgtcatggt cgttcatgac ggagaaggat
     9241 acggcggcgg tatggcagtt ttcggtcata ttgggtacag atcccatttc gttttccatt
     9301 ctgacgtatt cgtccaccgg tacgatggca ctgatcagat tggcggaata gcccagctcg
     9361 gccaatttgc aaccaatctt atcggtgagg ctttcgtcgt tggacggata acagatgacc
     9421 tgtccgttaa ggacctcagc agccttgcca gccacttcaa actccttttt gaaccatacg
     9481 atataagttt caatattttt ttccacggta ttgctcctaa aaaatgggat accgttcccc
     9541 ataggtacgg tccccacggg gttgataaaa gaaaatgccg tacatcccta aggatgcgtg
     9601 tcatgtttaa cggcaggaca caagacagat aaggtctgtc agcctgtaaa gacaggtatt
     9661 ttcagacggt cttactaaag tcgtctgaaa atacctgccc gaaggcaggt gagatatata
     9721 aaaagattac aaggtcagta atcttctggg aacaggagtg tggtaagact
//
LOCUS       DAWGNT010000061         9769 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.061, whole genome shotgun sequence.
ACCESSION   DAWGNT010000061 DAWGNT010000000
VERSION     DAWGNT010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9769
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.061"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(313..546)
                     /locus_tag="WHR98_001063"
     CDS             complement(313..546)
                     /locus_tag="WHR98_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HEZ2307752.1"
                     /translation="MKLTLMFREYCSLCHKMRDALKPFQNEYGFGLEVVDVDENPVLE
                     EKYNELVPVLLAGDEEICHWFLDEDRLKQFLER"
     gene            complement(712..912)
                     /locus_tag="WHR98_001064"
     CDS             complement(712..912)
                     /locus_tag="WHR98_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HEZ2307753.1"
                     /translation="MFVCICNAVTDHQIKETIAAGATTMGDLQSQLGVASCCGCCGEL
                     AASFLTAHNAQPTVTAGINVQA"
     gene            complement(1084..1959)
                     /gene="xerD"
                     /locus_tag="WHR98_001065"
     CDS             complement(1084..1959)
                     /gene="xerD"
                     /locus_tag="WHR98_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEZ2307754.1"
                     /translation="MEEGLIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRM
                     LKDADEADLAAAVYVDGEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDK
                     NIPTLITEQQISRLLAAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFSSVDLDRG
                     CITALGKGDKQRMVPMGQESAYWVERYYTEARPALLKGRSCDALFVSQKKTGISRQLA
                     WMIVKEYAGRAGIGHISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVA
                     NVWLQGVVKEHHSRN"
     gene            complement(2011..2451)
                     /locus_tag="WHR98_001066"
     CDS             complement(2011..2451)
                     /locus_tag="WHR98_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEZ2307755.1"
                     /translation="MDVKYEFTLPSSSGADFHSAEHLPLVVYFYPKDSTLGCTTEGLD
                     FNARLEQFEALGYTVVGISRDGVKAHQNFCAKQGFRFELLSDKDETVCRLFDVIKLKK
                     LYGKESLGIERSTFVLNKDGEIAHEWRKVKVAGHAQEVLETLSR"
     gene            2772..3710
                     /locus_tag="WHR98_001067"
     CDS             2772..3710
                     /locus_tag="WHR98_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEZ2307756.1"
                     /translation="MSIHTLKRLPSSLLLGLCLSLPSAHLFADNDILGQFLEQNMLTS
                     SDPIEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISK
                     LMSAMVVLDANLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRA
                     THALGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGLNFQNVSTAKDLSLMVNAAA
                     QYPQIRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKA
                     NIQNQPVTIVLLNSPTSATRVNDARKIESWMLQQRS"
     gene            3839..4132
                     /gene="hfq"
                     /locus_tag="WHR98_001068"
     CDS             3839..4132
                     /gene="hfq"
                     /locus_tag="WHR98_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HEZ2307757.1"
                     /translation="MTAKGQMLQDPFLNALRKEHVPVSIYLVNGIKLQGQVESFDQYV
                     VLLRNTSVTQMVYKHAISTIVPARSVNLQHENRPQAAPTSTLVQVETVQQPAE"
     gene            4217..4783
                     /locus_tag="WHR98_001069"
     CDS             4217..4783
                     /locus_tag="WHR98_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEZ2307758.1"
                     /translation="MLLQNILPFAHCLLRKALPEGGNALDGTAGNGHDTLFLAQTAGI
                     RGKVWAFDIQPQALSRTRCRLKEARYENVQLILDGHENLKQYVSEPLNAAIFNFGWLP
                     GGDKSLTTHTETSIPALCATLSLLKEGGMLIAVLYPGHENGKQEAEAIEQWAKNLPQE
                     QFAVLRYGFTNRKNNPPYLLAFEKLRQK"
     gene            4837..5211
                     /locus_tag="WHR98_001070"
     CDS             4837..5211
                     /locus_tag="WHR98_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HEZ2307759.1"
                     /translation="MQYLIVKYSHQIFVTITILVFNIRVFLLWKNPEKPLVGFWKALP
                     HLNDTMLLFTGLWLMKITHFSPFNAPWLGTKILLLLAYIALGMMMMRARPRSTKFYTV
                     YLLAMCCVACIVYLAKTKALPF"
     gene            5221..5715
                     /gene="folK"
                     /locus_tag="WHR98_001071"
     CDS             5221..5715
                     /gene="folK"
                     /locus_tag="WHR98_001071"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEZ2307760.1"
                     /translation="MNNRHFAVIALGSNLENPAQQVRAALDTLSSHPDIRLEQASSLY
                     MTAPVGYDNQPDFVNAVCTVSTTLDGIALLAELNRIEADFGRERSFRNAPRTLDLDII
                     DFDGISSDDSHLTLPHPRAHERSFVIRPLAEILPDFILGKHGKVAELSKRLGNQGIRL
                     LPDK"
     gene            complement(5842..6321)
                     /locus_tag="WHR98_001072"
     CDS             complement(5842..6321)
                     /locus_tag="WHR98_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEZ2307761.1"
                     /translation="MPESIFKQISLDILKLHRDSVYSLLATSGCNCQVHEAAYVNIDG
                     KYYISLSCEPEVGEVKTGILLIEDESRNLRLSWVGSARELDCKDNAYKRALFALSRKL
                     GRCKDRLHTAVQPFLLELVPEKGRFSVGDEEVWISRNDLVRALYPVGYSMRQAVFQI"
     gene            complement(6541..7278)
                     /gene="ubiE"
                     /locus_tag="WHR98_001073"
     CDS             complement(6541..7278)
                     /gene="ubiE"
                     /locus_tag="WHR98_001073"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEZ2307762.1"
                     /translation="MGGQKTHFGFSTVNEDEKAGKVAEVFHSVAKNYDIMNDVMSAGL
                     HRVWKHFTINTAHLKKGDKVLDIAGGTGDLSRGWAKRVGKEGEVWLTDINSSMLTVGR
                     DRLLNEGMILPVSLADAEKLPFPDNYFNLVSVAFGLRNMTHKDAALKEMYRVLKPGGT
                     LLVLEFSKIYKPLEGAYDFYSFKLLPVMGKLIAKDAESYQYLAESIRMHPDQETLKQM
                     MLDAGFDSVDYHNMSAGIVALHKGVKF"
     gene            complement(7332..7691)
                     /locus_tag="WHR98_001074"
     CDS             complement(7332..7691)
                     /locus_tag="WHR98_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HEZ2307763.1"
                     /translation="MNNIPVEIRLLKNRTVLVLTYGDEPKNLPAEFLRVYSPSAEVRG
                     HGVGQDVLQTGKADVQITDLQPVGQYALKISFSDGHDSGLYDWAYLHRLAYGYDAMWQ
                     EYLDKLAAAGASRFEEK"
     gene            7811..9430
                     /gene="mnmC"
                     /locus_tag="WHR98_001075"
     CDS             7811..9430
                     /gene="mnmC"
                     /locus_tag="WHR98_001075"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEZ2307764.1"
                     /translation="MDNLVWDGVPDIRTLDQTIRKHAHPLNLIVCLPDNQIPDFQTAQ
                     DASDAECRLKHRLDQATQCLQFDSINLIEHILPDVRFWLVPPSRTRRLREHFHHISWQ
                     TEAIPQTESKPDKPWFALPQTSERQKPEHILVIGAGISGAATAHALASHGISVTVLEA
                     RKAAQAASGNRQGLLYAKISPHDTEQTELLLAGYGYTKRLLGHILPESETWGGNGIIH
                     LNYSRTEQQRNHELGLQKHHNHLYRSITQAEAEKIAGIPLSVPYDHPSCGLYWQHGVW
                     LNPPAFVRTLLNHPLIGLHEDTPLTDISHDGEKWIASTPNGIFSATHIIYCTGAHSPR
                     LPETNLAALPLRQIRGQTGLTPSTPFSEQLRCAVSGESYISPSWHGLHCYGASFIPNS
                     SHTGWNEAEEASNRQALAHLNPALSESLFAANPNPQKHQGHAAIRCDSPDHLPLVGAL
                     GDIAAMQQTYAKLALDKNYRIDAPCPYLPNAYANTAHGTRGLATAPICAAAVAAQILG
                     LPHPFSQRLRHALHPNRTIIRAIVRRKDLTP"
     gene            complement(9427..9576)
                     /locus_tag="WHR98_001076"
     CDS             complement(9427..9576)
                     /locus_tag="WHR98_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307765.1"
                     /translation="MDSKGNLLGIPYSLFWEENVMGVFDILPSGLVCLFEYDFLWSGR
                     HAAKA"
BASE COUNT         2607 a         2974 c         1968 g         2220 t
ORIGIN      
        1 ctatcgatta cacaaacaca tatcatcttt acacaatcat gcttccatca acagtaaaac
       61 atgatatgat tgccaacaat aacatctcac aataaatttt ctaattttta ttgaaaaaat
      121 caataaataa gaattctccc aaccgacaaa taaaataaag aaagggttaa tatgcaacat
      181 cgaagaagac tagcaattta ccaagcatcc aaacgtgctt cctttaccgg caggtcatcc
      241 gccccgcaaa aacgtaaaga acgttgattt gaaaaaaatg ccgcctgaag tcctgcttca
      301 gacggcattt ttttaccgtt cgagaaactg tttcaacctg tcctcatcca aaaaccagtg
      361 gcagatttcc tcatctcccg ccaacaaaac gggaaccagc tcattgtatt tttcttccaa
      421 aacaggattt tcatccacat cgaccacttc cagcccgaac ccgtattcat tttgaaaagg
      481 tttgagtgca tcgcgcattt tgtggcacaa gctgcaatat tcacgaaaca tcaaggtcaa
      541 tttcatccgc gtttccttat ctgtcaattt gcacacgcca aagccttaga cgcagcagaa
      601 tcatggtcta tttgggaaaa aacaatgttt tcgaggaaga tgatactcaa gttctgccaa
      661 aaacagcaaa aatgccgtct gaacagttca gacggcattt cgaaaaccgt tttacgcttg
      721 aacgttgata cccgccgtaa ccgtcggttg cgcattgtgc gccgtcagaa acgaagcggc
      781 aagctccccg cagcagccgc agcagctcgc tacgcccaat tgcgactgca aatcgcccat
      841 tgtggtcgcg ccggcggcga tggtttcctt gatttgatgg tcggtaacgg cattgcagat
      901 gcagacaaac attttgtgct ccgtgtgttc tcaaactatc gtaccgatag cggcttttat
      961 taccgtatgc aaatataaat aaaaacggtt cgcattgcaa ggtcggcata cacggtttgt
     1021 cttggtaatt ttttatcaag ttttcatttc cgattgattt cttattaaac cgaagcagaa
     1081 gcctcagttt cgggaatggt gttccttcac tacaccctgc aaccatacgt tggcaacatg
     1141 ggtataaatc tgcgtcgtat tcaaatcggc atgtcccaac atatcctgaa ccacgcgcaa
     1201 atccaagccg tgccgcacca gatgcgtggc aaaggcgtgg cgcaggctgt gcgggctgat
     1261 gtgcccgatg cctgccctac ctgcatattc tttgacaatc atccatgcca actgacggga
     1321 aatacctgtt tttttctgac tgacaaacaa ggcatcgcaa ctcctgccct tcaacaaggc
     1381 cggacgcgcc tccgtgtaat agcgttccac ccaatacgcc gactcctgcc ccatcgggac
     1441 catcctctgc ttgtcgccct tgcccagcgc ggtaatacag cccctgtcca aatccacact
     1501 gctgaagttc agcccgaccg cctcgctgac gcgcaagccg gtcgcgtaca tcaattcgag
     1561 cagggccttg tcccgcaaac cgtgcggcgt gtcggtatcc ggggcggcaa gcagtcggga
     1621 aatctgctgc tcggtgatca gggtcggaat attcttgtcg attttgggcg gtttcagcaa
     1681 acgggtggga ttgtccgtcc ttatgccttc acgctccatc catatataca ggcgtttgca
     1741 tgccgataat gcgcgcgcct gcgaactccg ttgctctccg tcaacataaa ccgccgccgc
     1801 caaatccgct tcgtccgcat ccttcagcat tctgcccgat tgggacaggc ggcgggcgat
     1861 tttttccaaa tcgcgccggt aaccgtttaa agtattctga ttgagccgcc tgtccaacca
     1921 cagcgtttca agcagcctgt cgatcaaacc ttcttccata ccgttccaaa caaatgccgt
     1981 ctgaatcttc ttcagacggc atggttcaca ttatcgggaa agcgtttcca acacttcctg
     2041 tgcatgaccc gccactttga ctttccgcca ttcatgggcg atttctccat ccttattcaa
     2101 gacgaacgta ctgcgctcga tacctaacga ctctttcccg tacagtttct tcaatttgat
     2161 gacatcaaac aggcggcaca ctgtttcatc cttgtcgctc aacagctcga accggaaacc
     2221 ctgcttggcg caaaaattct gatgcgcctt tacgccgtcg cgggaaatac cgaccacggt
     2281 ataacccaat gcctcaaact gttccaaacg cgcattgaaa tccaagcctt ccgtcgtaca
     2341 gcccagcgta ctgtctttcg gataaaaata cacgaccaaa ggcagatgtt ctgccgaatg
     2401 aaaatccgca ccgctgctcg aaggcagggt aaattcatat ttcacatcca tagtcctact
     2461 cccgatattc ccattattca aaacgacacg cagacgcacc gccgcaattt ccaaaccaac
     2521 cccgattcta ccgccccaaa ggacagggat tcaaccgccg gaaacatcca aaccgacaca
     2581 cgacggcatg aaaaatatcc atgtcaaacc acaaaatatg ttccgattta aaaacagaat
     2641 gttataaaac ccaatcccca aaacacaaca agaccgcccg cctacgggca gtctcctgtc
     2701 agacgacata ctttacagat ggctgttttt tcaacaaaat aacgccaata ctcaaaaata
     2761 tggaatcaaa aatgtccatc catactctga aacgcctgcc ctcatcgctg ctgctcggtc
     2821 tctgcctttc cctgccgtca gcccaccttt ttgccgacaa cgacatttta gggcaatttt
     2881 tagaacagaa catgcttacc tcctccgatc cgatagaaat attcgccgaa agcacaatac
     2941 accccaccaa cacccaagcc attacaggcg gtctgattct ctcctcacag tctgccctgg
     3001 tcgtcaacaa caaaaccgga cagatactgt atcagaaaaa cgccgacagg attatgccca
     3061 tcgcctccat ttccaaactg atgagcgcga tggtcgtttt ggatgcaaac ttggacatga
     3121 acgaaaccgt taccattacg cccgacgaaa tcgaccgcct caaagggacc ggcagccgtc
     3181 ttgccatagg tacggcactt acacgcaaag aactgctgca cctgagcctg atgagcagcg
     3241 aaaaccgcgc cacccatgca ttgggcagaa cctaccccgg cggcatgggc gcatttgtcg
     3301 ccgccatgaa ccgtaaagcc caaagcctcg gtatgtacgg cagccgcttt tacgaaccga
     3361 ccggactcaa cttccaaaac gtttctaccg ccaaagacct gagccttatg gtcaacgccg
     3421 ccgcccaata tccgcaaatc cgcaccaact cgacttccaa ctacgcctcg gtacagacca
     3481 aaaacgggca gcagaactac aaaaactcca atgccctggt cagagaaggc atgtggaaca
     3541 tcgaattgca gaaaaccggc tacatacgcg aagcaggcag gtctatggtt gtcaaagcca
     3601 acattcaaaa tcaacccgtt accatcgtat tgctgaactc gcccacatcc gccacacgcg
     3661 tcaacgacgc ccgcaaaatc gaatcgtgga tgctgcagca acgctcctga catacaaatg
     3721 cccggcggaa aaccgcccaa acacaaaaaa aattggtaat ttttcctatt caaggctaca
     3781 attcgacacg cacagggcat ctgcccgatt tcacaatcat aatagcggag ttaaaaatat
     3841 gacagctaaa ggacaaatgt tgcaagatcc cttcctgaac gccctgcgta aagagcatgt
     3901 tccggtttcg atttacttag ttaacggtat caaattgcaa ggtcaggttg agtctttcga
     3961 tcaatacgtt gttctcctga gaaacacttc cgtcacccaa atggtttaca aacacgccat
     4021 ttccaccatc gtaccggcac gctccgtcaa cctacaacat gaaaacagac cccaagccgc
     4081 accgacttcg accctcgtcc aagtggaaac cgtccagcag cctgccgaat aatccgcacg
     4141 aagcatgacg tgtcatatct ttcaatacct taccggacaa cggtaaggta tttttatttt
     4201 cagacagcat ttaaaaatgt tattgcaaaa catccttcca ttcgcccatt gccttttgcg
     4261 gaaggcactt cccgaaggcg gcaatgcgct ggacggcacc gccggcaacg gacacgacac
     4321 ccttttcctc gcacaaaccg caggcatccg ggggaaagtg tgggcattcg acatccagcc
     4381 gcaagccctg agccgcactc gatgccgtct gaaagaagcg agatacgaga atgtgcaact
     4441 catcttagac ggacacgaaa acctgaaaca atatgtttca gaaccactaa atgccgccat
     4501 tttcaacttt ggctggctgc ccggcggaga taaaagcctt accacccata cggaaaccag
     4561 cattcccgcc ctttgcgcaa ccctctccct gctgaaagaa ggcggtatgc ttattgccgt
     4621 cctctatccg ggacacgaaa acggcaaaca ggaggcagaa gcaatcgaac aatgggcaaa
     4681 aaacctgcct caagaacagt ttgccgtttt gcgttacggc tttaccaacc ggaaaaacaa
     4741 cccgccctat ctgttggcat ttgaaaagtt acgtcaaaaa taaatgtttg cggtaaaata
     4801 agccgattct aacccttatt ttgatacgag ccgaccatgc agtatctgat tgtcaaatac
     4861 agccatcaaa tcttcgttac catcaccatt ttggtattca acatccgtgt tttcctactt
     4921 tggaaaaatc cagaaaagcc cttggtcggc ttttggaagg cactgcccca ccttaacgac
     4981 accatgctgc tgtttacggg attgtggctg atgaaaatta cccatttctc cccgttcaac
     5041 gcgccttggc tcggtacaaa aatcctgctt ctgctcgcct atatcgcatt gggtatgatg
     5101 atgatgcgcg cccgtccgcg ttcgaccaag ttctacaccg tttacctgct cgccatgtgt
     5161 tgcgtcgcct gcatcgttta ccttgccaaa accaaagccc tgcctttctg aaacaccgtt
     5221 atgaacaaca gacattttgc cgtcatcgcc ctgggcagta atcttgaaaa ccctgcccaa
     5281 caggtacgcg ccgcattgga cacgctgtcg tcccatcctg acatccggct tgaacaggct
     5341 tcctcactgt atatgaccgc ccccgtcggt tacgacaatc agcccgattt cgtcaatgcc
     5401 gtctgcaccg tttccaccac tctggacggc attgccctgc ttgccgaact caaccgtatc
     5461 gaagccgatt tcggacgcga acgcagcttc cgcaacgcgc cgcgcacatt ggatttggac
     5521 attatcgact ttgacggcat ctccagcgac gactcccacc ttaccctgcc gcatccgcgc
     5581 gcgcacgaac gcagtttcgt catacgccct ttggcagaaa tcctccctga ttttattttg
     5641 ggaaaacacg gaaaggttgc cgaattgtca aaacggctgg gcaatcaagg catccgtctt
     5701 ttaccggata agtaattccg cacgcggatg ccgtctgaat gccggtttca gacggcattt
     5761 ttcctttgcc gccaacacgc gtgcaaaaaa atcgcccctt ggaaaagggg cgcaaaagga
     5821 acacaaacca ctaccaaaac tttaaatctg aaacactgcc tgccgcatac tgtatccgac
     5881 aggatataaa gccctcacta aatcgtttcg agaaatccaa acttcttcat cgccgacaga
     5941 aaatctgcct ttctccggca ccagctccaa caaaaacggt tgaaccgccg tatgcagcct
     6001 gtccttacac cgccccagct ttctggacaa ggcgaacagg gcgcgtttgt aggcattatc
     6061 cttgcagtca agttcccgcg cactgccgac ccagctcaaa cgaaggttgc ggctttcatc
     6121 ctcaatcagc aaaatgcctg ttttgacttc ccccacctcg ggctcgcatg aaagcgaaat
     6181 ataatatttg ccgtcgatgt tgacatacgc cgcctcatgc acctgacagt tgcagccgga
     6241 agtggcaagc agcgaataaa cagaatcccg atgcagtttc aaaatatcaa gggaaatctg
     6301 tttgaaaata ctttccggca tttttccctc ctttcgtctg ctgcgttgtt tactggattg
     6361 actgcattat acagacatct cccaatcttg caaatgataa ttgttcctat tttttaaaaa
     6421 atttataaat tattgatgga tatgtgaatt aattttaaga tttaaaatct ctttctcaaa
     6481 aaaacacaaa aatgccgtct gaaacgtgtt cagacggcat tggctgcaca gccagtccgt
     6541 ttaaaatttc acgcccttat gcagcgcgac gatgcccgca ctcatattgt gataatccac
     6601 gctgtcaaag cccgcatcca gcatcatctg tttcaaagtt tcctgatcgg ggtgcatacg
     6661 gatggattcg gcgagatatt gataactctc cgcatctttg gcaatcagtt tgcccatgac
     6721 cggcagcagc ttgaacgaat agaaatcata cgcgccttcc aaaggtttgt agattttgga
     6781 aaactccaat accagcaatg tcccgccggg tttcaaaaca cggtacatct ctttcagcgc
     6841 ggcatcttta tgcgtcatat tccgcaaacc gaacgccacg gaaaccaagt tgaaataatt
     6901 gtcagggaaa ggcagttttt ccgcatcggc aagcgacacg ggcaaaatca tgccttcgtt
     6961 caaaagacgg tcgcgcccga cggtcagcat agaggaatta atatcggtca gccaaacctc
     7021 gccttccttg ccgacccgtt tcgcccaacc gcgcgacaaa tcgcccgtac cgcccgcaat
     7081 gtccaacact ttatcgcctt ttttcaggtg cgccgtgttg atggtgaaat gcttccacac
     7141 cctgtgcagc cctgccgaca tcacatcgtt cataatgtcg tagtttttgg cgacggagtg
     7201 gaacacttcc gccactttgc cggctttttc atcttcgttg accgtgctga acccgaaatg
     7261 cgttttttgt ccgcccatat tctaaccacc tctctgatac cgttgcccgt cagattacca
     7321 tccgaccggt cttatttctc ttcaaaacgc gacgcacccg ccgccgccaa tttgtccaaa
     7381 tattcctgcc acatcgcatc gtatccgtat gccagtctat gcagatacgc ccaatcgtaa
     7441 agaccgctgt cgtgcccgtc cgaaaaactg attttcagcg cgtactgtcc gacaggctgc
     7501 aaatccgtga tttggacatc cgccttgccg gtctgcaaaa catcctgtcc cacgccgtgt
     7561 ccgcgcactt ccgcactcgg cgaatagacg cgtaaaaatt cggcaggcag atttttaggt
     7621 tcgtccccat aagtcaaaac caacacggta cggtttttca acaaacggat ttcaacagga
     7681 atattattca aaaaacacct cggttcggca tacaatatcc ggcaggcgta cgcgtgcctt
     7741 taaacggcgc gtattttaac agctttatcc cgataccgat attcaaaccc acactttaaa
     7801 cggcattgat atggacaatc tcgtatggga cggcgttccc gacatccgca cactcgacca
     7861 aaccatccgc aaacacgcac acccgctcaa cctgattgtc tgcctccccg ataatcagat
     7921 tcccgatttt caaaccgcac aagatgcttc ggacgcggaa tgccgtctga agcaccgttt
     7981 ggatcaggca acgcagtgcc tccagttcga cagcatcaac ctcatcgaac acatcctgcc
     8041 cgatgtccgc ttctggctgg ttcccccttc acgcacccgc cgcctgcgcg aacacttcca
     8101 ccacatttcc tggcagaccg aagccatccc gcaaaccgaa agtaagcccg acaaaccctg
     8161 gtttgcactt ccacaaacat ccgaacggca aaaaccggaa cacatcctcg ttatcggcgc
     8221 gggcatatcc ggcgcggcaa ccgcccacgc cttagcatcg cacggcattt ccgttaccgt
     8281 attggaagcc cgaaaagccg cccaagccgc cagcggcaac cgccaagggc tgctctacgc
     8341 caaaatctcg ccgcacgaca ccgaacagac cgaacttttg cttgccggct acggctacac
     8401 caaacgcctg ctcggacaca tcctgcccga atccgaaacc tggggcggca acggcatcat
     8461 ccacctcaat tacagccgca ccgaacaaca acgcaatcac gaattgggtt tgcaaaaaca
     8521 ccataaccac ctctaccgca gcatcacgca ggcagaagcc gaaaaaatcg ccggtatccc
     8581 actgtccgtc ccatacgacc acccttcatg cggactctac tggcaacacg gcgtatggct
     8641 caatccaccc gcattcgtcc gcaccctcct caaccatccg ctcattggac tacacgaaga
     8701 cacaccgtta accgacattt cccacgacgg ggaaaagtgg attgcaagca cgccaaacgg
     8761 catattttcc gccacacaca tcatctactg caccggcgcg cacagccccc gcctgcccga
     8821 aaccaacctc gccgccctgc ctctcaggca aatacgcgga caaaccggcc tcacaccgtc
     8881 caccccgttt tccgaacaac tgcgttgcgc cgtttcaggc gaaagctaca tcagcccgtc
     8941 gtggcacgga ctgcactgct acggcgcgag ttttattccc aacagcagcc ataccggatg
     9001 gaacgaagcc gaagaagcct caaaccgcca agcattggca caccttaacc ccgccctttc
     9061 cgaatcattg tttgccgcca acccaaaccc ccaaaaacac caagggcacg ccgccatacg
     9121 ctgcgacagc cccgaccacc ttcccctagt cggcgcactc ggcgacattg ccgctatgca
     9181 acaaacttac gccaaactcg cgctggacaa aaactatcgc atcgatgccc catgcccata
     9241 tctgcctaat gcctacgcca acaccgccca cggcacacgc gggcttgcca cagcccccat
     9301 ctgcgccgcc gccgttgcag cccaaatcct aggcttgccc catccctttt cacaacgcct
     9361 gcgccacgcc ctacacccca accgcaccat catccgcgcc atcgtcagaa ggaaggatct
     9421 aaccccttaa gcctttgccg catgccgtcc cgaccacaga aaatcatatt caaataaaca
     9481 taccaatcct gacggtaaaa tatcgaaaac acccataaca ttttcttccc aaaataagga
     9541 gtaaggaatg cctaacaaat tgcctttgct gtccaagatg aatgttccgt aacattcgaa
     9601 gacttcctta accctgccag ccgtttcggt ttctgtaccc cctgttagat aaggaaggaa
     9661 tgaaaaagcc ctgttgattg tatgaagtaa agggagttaa tttttgttaa tcttcccttc
     9721 tcaggaactc aatatataag gatgttaatt tttatttccc ttctcgagg
//
LOCUS       DAWGNT010000062         9675 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.062, whole genome shotgun sequence.
ACCESSION   DAWGNT010000062 DAWGNT010000000
VERSION     DAWGNT010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9675
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.062"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            23..1126
                     /locus_tag="WHR98_001077"
     CDS             23..1126
                     /locus_tag="WHR98_001077"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009174415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEZ2307766.1"
                     /translation="MLILQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTK
                     LLATDLEIQIDTAGPEGGAGDFRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAG
                     KSRFALQTLPAADFPMMNVGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLL
                     MQVEGSQLRLVATDGHRLAYAACAIDADLPHAEVILPRKTVLELFKLLNNPDDPIQIE
                     LLDKQVRFQCNGTTIVSKVIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILAN
                     EKFRGARLFLQPGLLSVVCSNNEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS
                     DDMQLAFGDANRSTLFTVPNNPNFKYIVMPMRI"
     gene            complement(1095..1364)
                     /locus_tag="WHR98_001078"
     CDS             complement(1095..1364)
                     /locus_tag="WHR98_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307767.1"
                     /translation="MPSETFPFQTAWFYSNLNRADWNQKHTFAIPAQALPLYAPNPNP
                     PHSRRHCLSDSRTKPRIRLHGSGYISNTGIVFRKTVKSASASQYI"
     gene            complement(1389..3446)
                     /gene="ppk1"
                     /locus_tag="WHR98_001079"
     CDS             complement(1389..3446)
                     /gene="ppk1"
                     /locus_tag="WHR98_001079"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HEZ2307768.1"
                     /translation="MPEQNRILCRELSLLAFNRRVLAQAEDQNVPLLERLCFLCIVSS
                     NLDEFFEVRMAWLKRENKLHPRRRLDNGKMPSETIADVTEAARSLIRHQYDLFNNVLQ
                     PELAREGIHFYRRRNWTDTQKKWIEDYFDRELLPILTPIGLDPSHPFPRPLNKSLNFA
                     VELDGTDAFGRPSGMAIVQAPRILPRVVPLPSELCGGGHGFVFLSSILHAHVGKLFPG
                     MNVKGCHQFRLTRDSDLTVDEEDVQNLRAAIQNELHDREYGDGVRLEVADTCPAYIRD
                     FLLAQFKLTAAELYQVKGPVNLVRLNAVPDLVDRPDLKFPPHTQGRLKALGKNGSIFK
                     LIRRAPILLHHPYQSFNPVVEMMREAAADPAVLAVKMTIYRTGTRSELVRALMKAALA
                     GKQVTVVVELMARFDEANNVNWAKQLEEAGAHVVYGVFGYKVHAKMALVIRREDGVLK
                     RYAHLGTGNYHQGTSRIYTDFGIITADEQITADVNTLFMEITGLGKPGRLNKLYQSPF
                     TLHKMVIDRIARETEHAKAGKPARITAKMNSLIEPTVIEALYRASAAGVQIDLIVRGM
                     CTLRPGVKGLSENIRVRSIIGRQLEHARVYCFHNNGADDTFISSADWMGRNFFRRIET
                     AAPITAPELKKRVIREGLEMALADNTHAWLMQPDGGYIRAAPAEGESEADLQNDLWTL
                     LGG"
     gene            complement(3615..4058)
                     /locus_tag="WHR98_001080"
     CDS             complement(3615..4058)
                     /locus_tag="WHR98_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEZ2307769.1"
                     /translation="MPFRLFLGILCGLSMVAPVYAQGQPDTVGDFIQKKKVIVDTSKA
                     ELCFADDRQCHPVLIGVATPKGTFGLTLNSTDKPGYGGEVIGFKQEGDFLFALHRVWN
                     QIPSERRNERIASPSVSDRIMTNGCINVSDAVYEKLRHYFVLEVI"
     gene            complement(4065..4580)
                     /locus_tag="WHR98_001081"
     CDS             complement(4065..4580)
                     /locus_tag="WHR98_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HEZ2307770.1"
                     /translation="MKIKQIVKPGLAVLAAGVLSACATKSNVKADGTTDNPVFPKPYS
                     VTLDNKRGTFPTYDELDQMRPGLTKDDIYKILGRPHYDEGMYGVREWDYLFHFHTPGV
                     GIDPENTSGVEDVTTCQYKVIFDKDKFARSFYWNPVFPKDAACPPPAPKAEPQVIIRE
                     IVPAKPKRIRQ"
     gene            4850..7480
                     /locus_tag="WHR98_001082"
     CDS             4850..7480
                     /locus_tag="WHR98_001082"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEZ2307771.1"
                     /translation="MQEQYRPAAIEPAAQKKWDDARIFNVSEDASKPKYYCLSMFPYP
                     SGKLHMGHVRNYTIGDVLSRFKLLNGFNVMQPMGWDAFGMPAENAAMKNNVAPAAWTY
                     DNIEYMKTQLKSLGFAIDWARETATCKPEYYRWEQWLFTKLFEKGIVYRKNGTVNWDP
                     VDQTVLANEQVIDGRGWRSGALIEKREIPMYYFKITDYAEELLNDLDKLEHWPEQVKT
                     MQRNWIGKSRGMTVRFAVSDDSKQGLEGDYAKFLQVYTTRPDTLMGATYVAVAAEHPL
                     AAAAAADKPELQAFIAECKAGSVAEADMATMEKKGVPTGRYVVNPLNGDKLEVWIANY
                     VLWGYGDGAVMAVPAHDERDFEFATKYNLPKKQVIAVGDNAFDANRWQEWYGDKENGV
                     LVNSGDLDGLDFQTAFDAVAAKLQSQRAGEPKTQYRLRDWGISRQRYWGCPIPIVHCE
                     QCGDVPVPADQLPVVLPENVVPDGMGSPLAKMPEFYETTCPCCGGAAKRETDTMDTFM
                     ESSWYFFRYMSPKFSDGMVSAEAAKYWGAVDQYIGGIEHAILHLLYARFFTKLMRDEG
                     LVNVDEPFERLLTQGMVVCETYYRENDKGGKDWINPADVELTFDDKGRPVSAVLKADG
                     LPVVISGTEKMSKSKNNGVDPQELINAYGADTARLFMMFAAPPEQSLEWSDSGVEGAH
                     RFLRRLWRTVYEYLKQGEAVKAFAGSQDGLSKELKDLRHKLHATTAKVSDDYGRRQQF
                     NTAIAAVMELLNQYDKTDTGSEQGRAVAQEVLETAVRLLWPIVPHICETLWSELNSAK
                     LWEAGWPTVDEAALVKSEIEVMVQVNGKLRGKITVAADASKADLEAAALATEGAVKFM
                     EGKPAKKIIVVPGRLVNIVV"
     gene            7708..8499
                     /locus_tag="WHR98_001083"
     CDS             7708..8499
                     /locus_tag="WHR98_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEZ2307772.1"
                     /translation="MNLFFDTELGRQQNKATHKIRVMSEAWLEKNGYCPCCGSKPMKR
                     FANNKPVADLFCPNCHEQYELKSKNQKTIGNSVPDGAYHTMLERIRSDTNPNFFFLAY
                     KKADYSIRQLVLVPKHFITPDMIIPRNKGIKNRPNHIMCSINLAPLPESGKIFLIDDS
                     RIIEPETVLKKWQSNLFLRNQNAERKGWLLAVMKCIDQLPEEFTLSQMYGFEDKLSIQ
                     FPQNNHIRDKIRQQLQILRDQNTIEFIGRGLYKKIDKLPPTSKAF"
     gene            8629..8742
                     /locus_tag="WHR98_001084"
     CDS             8629..8742
                     /locus_tag="WHR98_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl-tRNA synthetase"
                     /protein_id="HEZ2307773.1"
                     /translation="MRDSDKPAASEGAVKFIEGNPAKKIIAVPGRLASIVV"
     gene            8844..>9675
                     /locus_tag="WHR98_001085"
     CDS             8844..>9675
                     /locus_tag="WHR98_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEZ2307774.1"
                     /translation="MKFPSFLPSFKRIVCLSAAISILGGCAVVADVYGHDSATMNAAA
                     AEDYMKTVELNKSAGNVDTTSRTARRVQAVFRRMLPYADAANNTGHKFDWKMTVFKND
                     ELNAWAMPGGKMAFYTGIVDKLKLTDDEIAAIMGHEMTHALHEHGKNKVGQQILTNTA
                     AQIGTQIILDKKPDTNPELVGLGMDILGTYGITFPYSRSLEEEADEGGMMLMAQAGYH
                     PAAAVRVWEKMNQENDQNGFIYAITSTHPTNNARIENLKRLLPTVMPVYEQSVRNKGR
                     V"
BASE COUNT         2315 a         2532 c         2681 g         2147 t
ORIGIN      
        1 aaaccgattt aaaggagcga acatgttgat tttacaagcc gaacgcgaca gcctgctcaa
       61 gccgctgcaa gccgttaccg gcatcgtcga acgccgccac accctgccca tcctgtccaa
      121 cgtcctgatt gagggaaaag gcggtcagac caaactcttg gcaaccgatt tggaaatcca
      181 aatcgacact gcgggtcccg agggcggcgc gggcgacttc cgcatcacta ccaatgccaa
      241 gaaatttcag gacattttgc gcgcgctgcc tgccggtgcg ctggtgtcgc tggattggga
      301 cgacagccgt ctgacgctga aggcgggcaa atcgcgtttt gccctgcaga ccctgcctgc
      361 cgccgatttt ccgatgatga atgtcggcga ggacatcagc gcgactttct cgctggagca
      421 ggagcgtttc aaaaccatgc tgtcgcaagt gcagtacagc atggcggtgc aggacatccg
      481 ctattatctc aacggtctgc tgatgcaggt tgagggcagc cagttgcgcc ttgtggcgac
      541 cgacggacac cgccttgcct atgcagcctg cgcgattgat gcggatttgc cgcacgccga
      601 agtgattttg ccgcgcaaaa cggtgctgga actgttcaaa ctgttgaaca accccgacga
      661 tccgattcaa atcgagctgc tggacaaaca ggtgcgtttc caatgcaacg gcacgaccat
      721 cgtcagcaag gtcatcgacg gcaaattccc cgatttcaac cgcgtgattc ctttggacaa
      781 cgacaagatt ttcgttttgt cccgtgccga acttttgggt gcgctggaac gcgtgtccat
      841 tcttgccaac gaaaaattcc gtggcgcgcg cctgttcctg caacccggcc tgttgagcgt
      901 tgtgtgcagc aacaacgagc aggaagaagc gcgcgaagaa atcgaaatcg cctatcaggg
      961 cggcgaactc gaagtcggtt tcaatatcgg ctatctgatg gacgtgttgc gcaacatcca
     1021 ttccgacgat atgcagcttg ccttcggcga tgccaaccgc tcgacgctgt ttaccgtgcc
     1081 gaacaatccg aatttcaaat atattgtgat gccgatgcgg atttgacggt tttccggaac
     1141 acgatgcccg tattggagat ataccccgaa ccgtgcagac ggattcgggg ttttgttcgg
     1201 ctgtcggaaa ggcaatgccg tctggaatgc ggcggattgg ggttgggagc gtatagggga
     1261 agtgcttgtg cgggaatggc gaaggtgtgt ttttgattcc agtccgccct gtttagattg
     1321 ctgtaaaacc atgccgtctg aaacggaaag gtttcagacg gcatggtttt tgattggggc
     1381 ggtgcgggtc agcctccgag cagtgtccac aaatcgtttt gcaggtcggc ttcgctttcg
     1441 ccctcggcag gcgcggcgcg gatatagccg ccgtcgggct gcatcagcca cgcgtgcgta
     1501 ttgtctgcca gtgccatttc caaaccttcg cggatgacgc gttttttgag ttcgggcgcg
     1561 gtaatcggcg cggcggtttc gatgcggcgg aagaagttgc gccccatcca atccgcgctg
     1621 gagataaagg tatcgtccgc gccgttgttg tggaagcaat acacgcgcgc gtgttcgagc
     1681 tgcctgccga tgatggagcg gacgcggatg ttttcggaca agccttttac acccgggcgc
     1741 aaggtgcaca taccgcgcac aatcaaatcg atttgtacgc ctgccgcgct tgcccgatac
     1801 agggcttcga tgacggtcgg ttcgatgagc gaattcatct tggcggtaat ccgcgccggt
     1861 ttgccggctt ttgcgtgttc ggtttcgcgt gcgatgcggt cgataaccat tttgtgcagg
     1921 gtaaacgggc tttggtagag tttgttcagc cgcccgggtt tgcccaagcc tgtgatttcc
     1981 ataaacaatg tgttcacatc ggcggtgatt tgttcgtcgg cggtaatgat gccgaagtcg
     2041 gtgtagatgc gcgatgtgcc ttggtggtag ttacccgtgc cgaggtgggc gtaacgcttg
     2101 agtacgccgt cttcgcggcg gatgaccagt gccatcttgg cgtggacttt gtagccgaac
     2161 acgccgtaca cgacgtgcgc gcccgcctct tcgagctgct tcgcccagtt gacgttgttg
     2221 gcttcgtcaa aacgcgccat cagttcgacg acgacggtta cttgtttgcc ggcgagtgcc
     2281 gccttcatca gggcgcggac gagttcggaa cgcgtgccgg tgcggtaaat cgtcattttg
     2341 acggcaagca cggcggggtc ggcggcggct tcgcgcatca tttcgacaac gggattgaag
     2401 gattggtagg ggtggtgcag caggatgggt gcacggcgta tcagtttgaa tatcgagccg
     2461 tttttaccca aggctttcaa cctgccttgt gtatggggcg gaaattttaa atcaggacgg
     2521 tcaaccaaat cggggacggc gttgaggcgc acgaggttga ccgggccttt gacctgatag
     2581 agttcggcgg cggtcagttt gaattgcgcg agcagaaagt cgcggatgta ggcgggacag
     2641 gtgtcggcga cttcgagccg cacgccgtcg ccgtattcgc ggtcgtgcaa ctcgttttga
     2701 atggcggcgc ggaggttttg tacgtcttct tcgtcaacgg tcaagtcgct gtcgcgcgtg
     2761 aggcggaact ggtggcagcc tttgacgttc atgcccggga agagtttgcc gacgtgggcg
     2821 tggaggatgg acgacaggaa gacgaagccg tgtccgccgc cacacagttc ggacggcagg
     2881 ggaacaacgc gcggcaggat gcgcggtgcc tgcacaatcg ccatccccga aggcctgccg
     2941 aacgcgtccg tgccgtcgag ttcgacggcg aagttgagcg atttgttcag cggtcgcggg
     3001 aaggggtggg acgggtcaag gccaatgggg gtcagaatcg gcaacaactc acggtcaaaa
     3061 tagtcttcaa tccatttttt ctgtgtgtct gtccaattgc ggcggcggta aaaatggatg
     3121 ccttcccgcg ccaactcggg ctgaaggacg ttgttgaaca ggtcgtactg gtgccgtatc
     3181 agggagcgcg ccgcttcggt aacgtcggcg atggtttcag acggcatttt gccgttgtcc
     3241 agcctgcgcc gggggtgcag cttgttttca cgtttgagcc acgccatgcg gacttcgaaa
     3301 aactcgtcga ggttggatga aacgatgcac aggaagcaca ggcgttccaa aagggggacg
     3361 ttttggtctt ccgcctgcgc caacacgcgg cggttgaatg ccagcaagct cagttcgcgg
     3421 cagaggatgc ggttttgttc gggcataagg ttctcccaaa gatggttgtt gttcggtcgg
     3481 agcgggcagg caatgccgtc tgaaggcttg gcggcatctg cgccggtttc agacggcatg
     3541 acgtggcgga cagtctgttt caggcatcgg ggcaatgtga aaacagatac cggcgcgtgc
     3601 ggtatccgtc tgtttcaaat cacttccaac acaaaataat gacgcagttt ttcgtacacc
     3661 gcatcgctga cgttgatgca gccgttggtc ataatcctgt cggacacgga cggggaggcg
     3721 atgcgttcgt tccgcctttc cgacggtatc tgattccaaa cgcggtgcag ggcgaaaaga
     3781 aaatcaccct cctgcttgaa accgatgact tcgccgccgt atccgggctt gtcggtactg
     3841 ttcagcgtca gcccgaacgt ccccttgggc gtggcaacac cgatgaggac ggggtggcac
     3901 tgacggtcgt cagcgaaaca gagttccgct ttggatgtat cgacgatgac ttttttcttt
     3961 tggataaagt cgccgaccgt atccggctgc ccctgtgcat atacgggggc aaccattgac
     4021 aggccgcata atatccctaa aaacaggcgg aacggcatgt cggattattg gcggatacgt
     4081 ttcggttttg ccggcacgat ttcgcggatg atgacttgcg gctcggcttt gggtgcgggc
     4141 ggcggacagg cggcatcttt cgggaagacg gggttccagt agaagctgcg ggcaaatttg
     4201 tctttatcga aaatcacttt gtattggcag gtagtaacat cttctacgcc ggaagtgttt
     4261 tcagggtcga tacctacgcc cggggtatgg aagtggaaca ggtaatccca ttcgcgcacg
     4321 ccgtacatac cttcgtcgta atgcgggcgg cccaggattt tgtagatgtc gtctttggtc
     4381 aggccggggc gcatctgatc cagttcgtca taagtcggga atgtgccgcg cttgttgtcg
     4441 agcgttacgg aatagggttt cgggaaaacc ggattgtcgg tcgtgccgtc ggctttgacg
     4501 ttgcttttgg ttgcgcaggc agacagaacg cccgccgcca atactgccaa gcccggtttg
     4561 acgatttgtt tgattttcat atgcagaatc ctcttttacc cgatgcccgt ctgccttttg
     4621 ttcggaagag ccgcatcagg agagttttaa acatttgatt ttggtttgta atattagcat
     4681 aaaaaacgtg cgtatcaata aacgcggtgt atttgtacgg catacggaat aatgcgcgtg
     4741 cgaatttacg catcctgccg gcaatctgcc gattcgccgc ttccggcaac ctgttataat
     4801 tgatgccgac tttatttttc caacgttttt aagcgaaaac agaatgacta tgcaagaaca
     4861 ataccggccc gccgccattg agcctgcggc gcagaaaaaa tgggacgacg cccgtatttt
     4921 caacgtctcc gaagacgctt ccaaacccaa atattattgc ctctccatgt tcccctatcc
     4981 cagcggcaag ctgcacatgg ggcatgtgcg caactacacc atcggcgatg tattgagccg
     5041 cttcaaactt ttaaacggct tcaacgtcat gcagcctatg ggttgggacg cgttcggcat
     5101 gccggcggaa aacgcggcga tgaaaaacaa cgtcgcccct gccgcttgga cgtacgataa
     5161 catcgaatac atgaaaaccc agctcaaaag cctaggtttt gcgattgact gggcgcgcga
     5221 aaccgcaacc tgcaaacccg aatactaccg ctgggaacaa tggctgttta ccaagctgtt
     5281 tgaaaaaggc atcgtgtatc gcaaaaacgg cacggtgaac tgggaccctg tcgaccaaac
     5341 cgtccttgcc aacgagcaag tcatcgacgg acgcggctgg cgttccggcg cattgatcga
     5401 aaaacgcgaa atcccgatgt attacttcaa aatcacggat tacgccgaag agctgctcaa
     5461 cgacttggac aagctggaac actggccgga acaagtcaaa accatgcagc gcaactggat
     5521 cggcaaatcg cgcggtatga ccgtgcgctt cgccgtttca gacgacagca aacaaggctt
     5581 ggaaggcgat tacgcgaaat tcctgcaagt ttataccacc cgccccgaca cgctgatggg
     5641 tgcgacttat gttgccgttg ccgccgagca tccgctggca gccgccgcag ccgccgacaa
     5701 acccgaattg caggcattta ttgccgaatg caaagccggt tcggttgccg aagccgatat
     5761 ggcgacgatg gagaaaaaag gcgtgccgac cggtcgctac gtcgtcaacc cgctcaacgg
     5821 cgacaagctg gaagtgtgga ttgccaacta tgtattgtgg ggctacggcg acggcgcggt
     5881 catggcggtt ccggcgcacg acgaacgcga tttcgagttc gccaccaaat acaatctgcc
     5941 gaaaaaacaa gtcattgccg tcggcgacaa cgcattcgac gcaaaccgat ggcaagaatg
     6001 gtacggcgac aaagaaaacg gcgtattggt caacagcggc gacttggacg gcttggattt
     6061 tcagacggca ttcgatgccg tcgccgccaa gctgcaaagc caaagagcgg gcgaaccgaa
     6121 aacccaatac cgcctgcgcg actggggcat ttcgcgccaa cgctactggg gctgcccgat
     6181 tcccatcgtc cattgcgaac aatgcggcga cgtccccgtc cccgccgacc aactgcccgt
     6241 cgtcctgcct gaaaacgtcg tacccgacgg catgggttcg ccgctggcaa aaatgcccga
     6301 gttttacgaa accacctgcc catgctgcgg cggcgcggcg aaacgcgaaa ccgacaccat
     6361 ggacaccttc atggaatcga gctggtattt cttccgctat atgtcgccca agttttcaga
     6421 cggcatggta tcggcagaag ccgcgaaata ctggggagcg gtcgaccaat acatcggcgg
     6481 catcgaacac gcgattctgc acctcctgta cgcgcgtttc ttcaccaaac tgatgcgcga
     6541 cgaaggcttg gtcaatgttg acgaaccgtt tgaacgcctg ctgacgcaag gcatggtcgt
     6601 ttgcgaaacc tactaccgcg aaaacgacaa aggcggcaaa gattggatca accccgccga
     6661 tgtcgagctg acgttcgacg acaaaggccg ccctgtttcc gccgtcctca aagccgacgg
     6721 tctgcccgtc gtcatcagcg gcacggaaaa aatgtccaag tccaaaaaca acggcgtcga
     6781 tccgcaagag ctgattaacg cctacggcgc ggacactgcc cgcctgttca tgatgttcgc
     6841 cgcaccgccc gaacagtccc tcgaatggag cgacagcggc gtcgaaggcg cacaccgctt
     6901 cctgcgccgc ctgtggcgta ccgtttacga atacttgaag caaggcgaag cggtcaaagc
     6961 gttcgcaggc agccaagacg gtttgtctaa agaactcaaa gacctgcgcc acaaactgca
     7021 cgcgaccact gccaaagtca gcgacgacta cggccgccgc cagcagttca acaccgccat
     7081 cgccgccgtg atggaactgc tcaaccaata cgacaaaacc gacaccggca gcgaacaagg
     7141 ccgcgccgtc gcccaagaag tattggaaac cgccgtacgc ctgctgtggc ccatcgtgcc
     7201 gcacatctgc gaaaccctgt ggagcgaatt gaacagcgcg aaactgtggg aagcaggctg
     7261 gccgacagtc gatgaagccg ccttggtcaa atccgaaatc gaagtcatgg ttcaagtcaa
     7321 cggcaaactg cgcggaaaaa tcaccgtcgc cgccgacgca tccaaagccg acctcgaagc
     7381 cgccgcactc gccaccgaag gcgcagtgaa attcatggaa ggcaagcccg cgaagaaaat
     7441 catcgtcgtt cccggacgct tggtaaatat cgtcgtctaa ccgcttttaa ggtttagcca
     7501 cacggataaa ggccgtctga aacttggaaa cagggtttca gacggccttt ttaaggcaga
     7561 ttgggttgtc tgcattacag acctcaaata tagtggatta actttaaacc ggtacggcgt
     7621 tgccccgcct tgccctgctg tctgcggctt cgtcgccttg tcctgatttt tgttaatcca
     7681 ctaaaactta atctcaaaat ccaaaatatg aatttatttt tcgataccga attgggaagg
     7741 caacaaaata aagcaaccca caaaatccgt gtaatgagcg aggcttggct ggaaaaaaac
     7801 ggctactgcc cctgttgcgg aagcaagccg atgaagagat ttgccaataa caaacctgtt
     7861 gcagacctct tttgcccaaa ttgccacgag caatatgaat taaagagtaa aaatcaaaaa
     7921 accataggca acagcgtgcc tgacggtgca tatcacacca tgttggagcg catccggtca
     7981 gataccaacc ccaacttttt ctttcttgca tataaaaaag cggattactc catacggcaa
     8041 ttggtgcttg tacccaaaca tttcatcacg ccggatatga ttattcccag aaataaaggc
     8101 attaaaaacc ggccgaacca cattatgtgt tccatcaatc tcgccccttt gcctgaaagc
     8161 ggcaaaatat tcttaataga cgattcccgc attatcgaac ccgaaaccgt tctgaaaaaa
     8221 tggcaatcca acctgttttt acgcaaccaa aatgcggagc gcaaaggctg gcttttggct
     8281 gttatgaaat gtatcgacca actccccgaa gaattcacat tgtcgcaaat gtatggattt
     8341 gaagacaaac tatccatcca atttccccaa aacaaccata tcagagacaa aatccgccaa
     8401 cagttgcaaa ttttgcgcga ccaaaatacg atcgaattca ttggtcgcgg actttacaaa
     8461 aaaatcgaca aattgccccc gacttccaag gcgttttaat ttcaaatcat gatactgaat
     8521 tcacaaggga tatttattct tctgctattc tgaaaacagt tgaagttcag cgcaatattg
     8581 ccgcaaaagg cagcagccgt aaaaaagtcg gggaattatt ggcaatttat gcgtgattcc
     8641 gacaaaccgg ccgcctccga aggcgcagtg aaattcatag aaggtaatcc tgccaagaaa
     8701 atcatcgccg taccgggcag actggcgagc atcgtggtgt aaatcttttt aaaaacatca
     8761 aacaatgtta agatgccgtc cgaaatccgt tttagattca gacggcattt tttaaattta
     8821 attttttaag ggataagcct aatatgaaat ttccttcctt ccttccttcc tttaaacgga
     8881 tagtctgtct gtcggcagca atctcgatat tgggaggttg tgcggtcgtt gctgatgttt
     8941 acggtcatga ttccgccaca atgaatgctg cggctgccga agattatatg aaaacggttg
     9001 agttgaacaa gtctgccggc aatgtcgata ccacatccag aacagcccgc agggtgcagg
     9061 cagtatttcg acgtatgctg ccttatgccg atgcggcaaa taataccggc cataagtttg
     9121 actggaaaat gacggttttc aaaaacgatg agctgaacgc gtgggcaatg cccggtggaa
     9181 aaatggcgtt ttatacgggg atagtcgaca aactcaagct gaccgatgac gaaattgccg
     9241 ccattatggg gcatgaaatg acgcacgccc tgcatgaaca cggtaaaaat aaggtcgggc
     9301 aacaaatttt gaccaatacg gcggcgcaga taggcacgca gattatatta gacaaaaaac
     9361 cggacactaa tccggaattg gtcggattgg gtatggatat tttgggaacg tacggcatta
     9421 cctttcctta tagtcgcagc ttggaagaag aagccgatga ggggggaatg atgttgatgg
     9481 cgcaggcagg ctatcatccg gcggccgctg tcagggtttg ggaaaaaatg aatcaggaaa
     9541 acgaccaaaa cggctttatt tatgctatta cctctactca tccgacaaac aatgcccgta
     9601 tagaaaatct aaaacggttg ttgccgaccg ttatgccggt ttatgagcaa agtgtcagaa
     9661 ataaggggcg cgtta
//
LOCUS       DAWGNT010000063         9412 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.063, whole genome shotgun sequence.
ACCESSION   DAWGNT010000063 DAWGNT010000000
VERSION     DAWGNT010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9412
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.063"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(113..1555)
                     /gene="aldA"
                     /locus_tag="WHR98_001086"
     CDS             complement(113..1555)
                     /gene="aldA"
                     /locus_tag="WHR98_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HEZ2307775.1"
                     /translation="MKQLAMYINGRFENDFNGEWRDVLNPSTEETIAREPKGGKADVD
                     RAVAAARAAQPAWERLPAVERGAYLRKIAQGIRERADELTDTIVAEGGKTKDLARVEV
                     MFTADYLDYQAEWARRYEGEIIQSDRPRENILLFKRPLGVIAGILPWNFPFFLIARKM
                     GPALVTGNTIVVKPSSVTPINCHIFAEIVDAVGLPAGVFNVVNGPGAEIGNALSAHPQ
                     VDMVSLTGSVEAGRQVMEAASANITKVSLELGGKAPAIVLKDADLDLAVKSILASRVG
                     NTGQICNCAERVYVHSSLKDAFIEKMTAAMKGVRYGNPAEAEAGALEMGPLIEERAVK
                     AVAEKVERAVKQGAKLVCGGKRAEGRGYFFEPTLLTDTDNSMDIMKEETFGPVLPVSA
                     FDTLDQVIALANDCEFGLTSSVYTTNLNEAFYVTRRLQFGETYINRENFEAMQGFHAG
                     WKKSGIGGADGKHGLEEYLQTQVVYLETDI"
     gene            complement(1590..1790)
                     /locus_tag="WHR98_001087"
     CDS             complement(1590..1790)
                     /locus_tag="WHR98_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307776.1"
                     /translation="MDTVGSLAIGYATGGNAGAFTGANADWNNRQLHSSEYKLAEQYA
                     DIVASRLNISKETCTVIYLGIN"
     gene            complement(1799..2188)
                     /locus_tag="WHR98_001088"
     CDS             complement(1799..2188)
                     /locus_tag="WHR98_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307777.1"
                     /translation="MLYKCKIKKLDNTIEEAVLIEINGYELHCFISYCPFKIFENQFY
                     EVELSYEIFNDYILDKSTSNIGFRKIDDSFKYEITAELKNNHLTLQNIQFEEDEYLIN
                     YSYLDNCLVTLTADRISVSFIREIQAA"
     gene            complement(2396..3313)
                     /locus_tag="WHR98_001089"
                     /pseudo
     CDS             complement(2396..3313)
                     /locus_tag="WHR98_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240797.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            3486..4286
                     /locus_tag="WHR98_001090"
     CDS             3486..4286
                     /locus_tag="WHR98_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEZ2307778.1"
                     /translation="MSPSPFIEMKDVAFAYGDRPILKNINFSIPQGNFAAVMGGSGSG
                     KTTLMRLITGQIRPQSGQVLIEGRDLAGFSADELYEHRRRMGVLFQHGALFTDLSVFD
                     NIAFPMRELTRLPEAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSRRVALARTIALD
                     PEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSIMVTHDIEKSLEIVDQVIFLAH
                     GEIMFSGSPQEMRELDSPWVRQFVGGLADGPVAYRYPAQTSLQQDLLG"
     gene            4334..5110
                     /gene="mlaE"
                     /locus_tag="WHR98_001091"
     CDS             4334..5110
                     /gene="mlaE"
                     /locus_tag="WHR98_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HEZ2307779.1"
                     /translation="MNFIRSVGARTLGLIQSLGSITLFLLNILAKSGTAFVRPRLSVR
                     QVYFAGVLSVLIVAVSGLFVGMVLGLQGYTQLSKFKSADILGYMVAASLLRELGPVLA
                     AILFASSAGGAMTSEIGLMKTTEQLEAMNVMAVNPVARVVAPRFWAGVFSMPLLASIF
                     NVAGIFGAYLVGVSWLGLDSGIFWSQMQNNITIHYDVINGLIKSAAFGVAVTLIAVHQ
                     GFHCVPTSEGILRASTRTVVSSALTILAVDFILTAWMFTD"
     gene            5161..5655
                     /gene="mlaD"
                     /locus_tag="WHR98_001092"
     CDS             5161..5655
                     /gene="mlaD"
                     /locus_tag="WHR98_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HEZ2307780.1"
                     /translation="MKKNILEFWVGLFVLIGAAAVAFLAFRVAGGAAFGNSGKTYTVY
                     ADFGDIGGLKVNAPVKSAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQIL
                     TSGLLGEQYIGLQQGGDTENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNADGGNAE
                     KAAE"
     gene            5692..6282
                     /locus_tag="WHR98_001093"
     CDS             5692..6282
                     /locus_tag="WHR98_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HEZ2307781.1"
                     /translation="MKKSSLISALGIGILSIGMAFAAPADAVNQIRQNATQVLSILKS
                     GDANTARQKAEAYAIPYFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGT
                     MLKLKNANVNVKDNPIVNKGGKEIIVRAEVGVPGQKPVNMDFTTYQSGGKYRTYNVAI
                     EGASLVTVYRNQFGEIIKAKGVDGLIAELKAKNGSK"
     gene            6339..6617
                     /locus_tag="WHR98_001094"
     CDS             6339..6617
                     /locus_tag="WHR98_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HEZ2307782.1"
                     /translation="MHTELNNGTLHISGDVTVKTLTAAAFTRFRQQCRLKDTRAVDLS
                     GVGRADSACVSLLLEVLRGCKGSVRLTSIPESVRALSELYEIKDWLKS"
     gene            6614..7441
                     /locus_tag="WHR98_001095"
     CDS             6614..7441
                     /locus_tag="WHR98_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEZ2307783.1"
                     /translation="MKKTAYAALLLIGFASAPAFAETRPADPYEGYNRAVFKFNDQAD
                     RYIFAPAARGYRKVAPKPVRAGVSNFFNNLCDVVSFGSNILRLDIKRASEDLVRVGIN
                     TTFGLGGLIDIAGAGGIPDNKNTLGDTFASWGWKNSNYFVLPVLGPSTVRDALGTGIT
                     SVYSPKNIVFRTPVGRWGTTAVSAVSTREGLLDLTDSLDEAAIDKYSYTRDLYMKVRA
                     RQTGATPAEGTEDNIDIDELVESAETGAAETAVQEDSVSETQAEAAGEAETQPGTQP"
     gene            7566..7928
                     /locus_tag="WHR98_001096"
     CDS             7566..7928
                     /locus_tag="WHR98_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003681812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ"
                     /protein_id="HEZ2307784.1"
                     /translation="MYEVNRSVFVLIPLEPFWNWLQTLPGNHLDGLTLEDIQADANSY
                     LVRPCETADEVWDEIEARFEDIFAAELADWCEDEREWPALDADIFNEWFDIQLSTVIT
                     DLEHEPLAREAFQPINLN"
     gene            7925..8311
                     /locus_tag="WHR98_001097"
     CDS             7925..8311
                     /locus_tag="WHR98_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEZ2307785.1"
                     /translation="MMKLTVRNYHLDGYGHVNNARYLEFFEEARWAFFEERGLLHELA
                     GLILIVARIDIRYSRPAVEGDVLQFSCRLKTPGTRRIVLTQTITLPNGKTAAEADITL
                     MPVHAATQRTVSLPATLARALEALSE"
     gene            8308..8796
                     /locus_tag="WHR98_001098"
     CDS             8308..8796
                     /locus_tag="WHR98_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEZ2307786.1"
                     /translation="MKKILTAAVVALIGILLAIVLIPDSKTAPAFSLPDLHGKTVSNA
                     DLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVK
                     DYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAL
                     AQ"
     gene            complement(8878..9045)
                     /locus_tag="WHR98_001099"
     CDS             complement(8878..9045)
                     /locus_tag="WHR98_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HEZ2307787.1"
                     /translation="MEDDVWPGHRVIVMAGVTVGRGSVVGAGAVVTKDIPPYSLAAGN
                     PAVVKKNLPEG"
     gene            complement(9012..9392)
                     /locus_tag="WHR98_001100"
     CDS             complement(9012..9392)
                     /locus_tag="WHR98_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-o"
                     /protein_id="HEZ2307788.1"
                     /translation="MGSKFFFLLLRFAGSGLPPSHMRGIGIVGRRVRGFLARRVSPHI
                     GRGVNIERGAYVFPDTVLGDGSGIGANCEICRGLVVGKNVMMEPECLFYSNNHKFDRS
                     KNALRATRKSVRLRWRTMSGRGTG"
BASE COUNT         2160 a         2623 c         2384 g         2245 t
ORIGIN      
        1 agacaaaaac atcgatgtcg gtcatgactg attgccggtg aaactgtaaa aatgccgtct
       61 gaacctgaaa acgggttcag acggcatttt ctatcggggt tttaaagcgg cattaaatgt
      121 cggtttccag ataaacgact tgggtttgca gatattcttc caaaccgtgt ttgccgtccg
      181 cgccgccgat gccggatttt ttccagcccg cgtggaaacc ctgcatggct tcgaagtttt
      241 cgcggttgat gtaggtttcg ccgaattgca ggcggcgggt aacgtagaag gcttcgttta
      301 aattagtcgt ataaacagaa ctggtcagac caaactcgca atcgttagcc agtgcgatga
      361 cttggtcgag cgtgtcgaaa gcggaaacgg gcagcacggg gccgaaggtt tcttctttca
      421 taatgtccat actgttgtcg gtgtcggtca gcagggtcgg ctcgaagaaa tagccgcgcc
      481 cttcggcgcg tttgccgccg cagaccagtt tcgcaccttg tttgactgcc cgttccactt
      541 tttcggcaac ggctttgacg gcgcgctctt caatcagcgg acccatttcc agcgcgcctg
      601 cttcggcttc ggcagggttg ccgtagcgca cgcctttcat ggcggcggtc attttttcaa
      661 tgaacgcgtc tttcaggctg ctgtggacat agacgcgctc ggcgcagttg cagatttgac
      721 cggtgttgcc gacgcgcgaa gccaagatgg atttcaccgc caaatccaaa tccgcgtctt
      781 tcaaaacgat ggcgggggct ttgccgccga gttccagcga aactttggtg atgttggcgg
      841 aagcggcttc catcacttgg cggcctgctt cgacggagcc ggtcaggctg accatatcga
      901 cttgcggatg ggcagacaag gcattgccga tttccgcacc cggaccgttc accacgttga
      961 acacgcctgc gggcaatccg accgcatcga cgatttcggc gaagatgtgg cagttgatcg
     1021 gggttacgct gctgggtttg acaacgatgg tgttgcccgt tactaaggcg ggacccattt
     1081 tgcgggcaat caggaagaaa gggaagttcc acggcaaaat gccggcaatt acgcccagcg
     1141 gacgtttgaa caataaaatg ttttcgcgcg ggcggtcgct ttggatgatt tcgccttcgt
     1201 aacggcgcgc ccattcggcc tggtaatcga gatagtcggc ggtaaacatg acttccacgc
     1261 gtgccaagtc tttggttttg ccaccttcgg caacgatggt gtcggtcagc tcgtcggcac
     1321 gttcgcgtat gccttgggcg attttgcgca aatacgcgcc gcgttcgacc gcaggcagac
     1381 gttcccaagc cggttgcgcc gcgcgtgccg ccgccacggc tcggtcaacg tccgctttgc
     1441 cgcctttggg ttcgcgggcg atggtttctt cggtggacgg gttcaatacg tcgcgccatt
     1501 cgccgttgaa gtcgttttca aagcgtccgt tgatgtacat ggccaattgt ttcatttcgg
     1561 gttctccagt tttgtagtca gatgtagttt tagtttattc ccaaataaat taccgtacaa
     1621 gtttcttttg aaatgtttag acgagaagct actatgtctg catattgttc tgctaattta
     1681 tattcactcg aatgcaactg ccgattattc caatctgcat tcgcaccagt aaaagcccca
     1741 gcattgccgc ctgtggcata accaatcgct aaactgccaa cggtatccac aacaggtttc
     1801 aggctgcctg aatttctcta ataaatgaaa cacttattct atcagccgtt aatgtaacca
     1861 aacaattatc aagataagag tagtttatta aatactcatc ttcttcaaat tgtatatttt
     1921 gtagggttag atgattattt tttaattctg ccgttatttc atacttgaaa ctatcatcta
     1981 tttttctaaa tccaatattt gaagttgatt tatccagtat gtaatcatta aagatttcat
     2041 aggataattc cacttcataa aattgatttt caaatatttt gaatgggcag tacgatataa
     2101 aacaatgtag ttcataacca tttatttcaa tcaatactgc ctcttcaatg gtgttatcta
     2161 actttttgat tttacattta tataacattt atcttgcctt tggataaatt gttttgtttt
     2221 ttggattgtt attcaaagtt ctccaaaagt cttttcctga ttttgtatgt atcgtggtaa
     2281 tactaccatt ttcattggtt ccaacaaaaa taaatttaga ttgacctttg gaatcagtac
     2341 ccaaaaactg aacatatcca gacatgcgga tttcgggttt taaatcaaat gcggcttatc
     2401 ggttttcttt tttggtttcc gcaggcgtgc tgccgaaata ttgcctgaat gcctgagtaa
     2461 agctggaaac gtggcggtag ccgcataaat atgcggtttc gcctatgctt ttccccccgt
     2521 tttgcaacag atagagcgcg tgctgcattt gtttgtggtg cagccactcg cttgcggtaa
     2581 tgccgaaatg gtcgcgcata cggcgttgca gcgtcctttc gctgatgttc agcgcatctg
     2641 tcagtcggtt gacttggtgt gcgccgccgt cgaacgcggc atttagggtg cggctgaagt
     2701 cttcagacgg catagcgtct gcttccgccg tttgccccgc cgccggcccg atgccgtctg
     2761 aaaccgtgtc ccacaagtcc gacagcagcc gcaacacgtc tgcctcgcgg cgtaatgttt
     2821 tgcccaaatg cccctttggg acggcttgca ggcaggatgc cgccaagccg cgcaggttcg
     2881 ggggcaaatc ctatatcctg accggttcgc ggtaaagcag gggtgcgaaa cgcgcgtatt
     2941 ccggacgcag cagccattgt tccatacctt taattgtcat tttgaccgtt ttgccgccgc
     3001 gataaagata gcggctgaac aggacttctt ccccgactga aatcaggatg accttgccgc
     3061 cgtccgcatc gatttggaag cggctccggt tgatgccgaa gctcaaagag ccttccagca
     3121 aaagtacgaa cgacacataa ggttcggcga ggcggctgct gcaaaaatca caccgtgccg
     3181 ttactgtgcc gccgtggatg gaaatgccgt tggacaaagt atcgaaacgg tagctgccct
     3241 ccacatagct gccgccgccg cttttgacta gattgacgaa ccggctgctg ttcaaatgtt
     3301 ctgctttttc catagttttc tgataaaggt tatcatttga aagataacat ttttcgccac
     3361 agcaaacaat ccgccgccga caacggcatt ttcacaacat ttaccgtccg tatgccgtct
     3421 gaaaattgcc cgtcttcccg ataagcctta aaatacacgc cgtcaaacct accgtccgtc
     3481 cgtacatgag cccatccccc tttatcgaaa tgaaagacgt cgccttcgcg tatggcgacc
     3541 gcccgattct gaagaacatc aatttcagca ttccgcaagg caattttgct gccgtaatgg
     3601 gcggttcggg cagcggcaaa accacgctga tgcgactgat tacaggacag attcgtccgc
     3661 agtccgggca ggttttgatt gaaggacggg atttggcggg cttttcggct gacgagttgt
     3721 atgaacaccg ccgccgtatg ggcgtattgt tccaacacgg cgcgctgttt actgatttgt
     3781 cggtattcga caatatcgct tttccgatgc gcgaactgac gcgcctgccg gaagcggtga
     3841 ttcgggattt ggttttgttg aaattgaacg cggtcggtct gcgcggtgtg gaaaacctga
     3901 tgccgtccga gttgtccggc gggatgtcgc gccgcgtcgc gcttgcccgc acgattgcgc
     3961 tcgaccctga aattatgttg tacgacgagc cgtttaccgg cctcgatccg atttccttgg
     4021 gcgtgattgc ccacttgatc agccgcgtca acaaggcttt gcgttcgacc agtattatgg
     4081 taacgcacga cattgaaaaa tctttggaaa tcgtcgatca ggtgattttc ttggcgcacg
     4141 gcgaaattat gttctccggc tcgccgcagg aaatgcgcga actggattcg ccttgggtgc
     4201 gccagtttgt cggcgggctg gcagacggcc ccgtggcata ccgctatccg gcgcaaacgt
     4261 cgttgcagca ggatttgctc gggtaaatga gccggtgccg tctgaaaccg ttgaacctta
     4321 cacatagaaa tttatgaatt ttatccgttc cgtcggggcg agaaccctcg gccttattca
     4381 atccctcggc agtattacgc tgtttctgct gaacattctg gcgaaatccg gtacggcttt
     4441 cgtccgtccg cgcctgagcg tgcgccaagt gtatttcgcc ggcgtgctgt cggtgctgat
     4501 tgttgccgtt tcggggctgt tcgtcggtat ggttttgggt ttgcagggtt atacgcagtt
     4561 gtcgaaattc aaatccgccg atattttggg ctatatggtt gcggcttcgc tgttgcgcga
     4621 actgggtccg gtgttggcgg cgattctgtt tgccagcagc gctggcggtg cgatgaccag
     4681 cgaaatcggt ttgatgaaaa cgaccgaaca gctcgaagcg atgaacgtga tggcggtaaa
     4741 ccctgtcgcc cgcgtggttg cgccgcgctt ttgggcgggc gtgttttcca tgccgctttt
     4801 ggcttcgatt ttcaacgtgg cgggtatttt cggcgcgtat ttggtcggtg taagctggct
     4861 gggcttggac agcggcattt tctggtcgca aatgcagaac aacatcacga tacattacga
     4921 tgtaatcaac ggtctgatca aatccgccgc gttcggcgtg gcggtaacgc tgattgccgt
     4981 gcatcagggc tttcactgcg tgccgacttc ggaaggcatt ttgcgcgcca gcacgcgcac
     5041 ggtggtttcg tccgccctga cgattttggc ggtcgatttt atattgaccg cgtggatgtt
     5101 tacagattga cagggcgtct gaagacgaaa cgcggaacat cggatattca aggaacttta
     5161 atgaaaaaga acatattgga attttgggtc ggactgttcg tcctgattgg cgcggcggcg
     5221 gttgcctttc tcgctttccg cgtggcgggc ggcgcggcgt tcggcaattc cggcaagact
     5281 tataccgtat atgccgattt cggcgacatc ggcggtttga aggtcaatgc ccccgtcaaa
     5341 tccgcaggcg tattggtcgg gcgcgtcggc gctatcggac ttgacccgaa atcctatcag
     5401 gcgagggtgc gcctcgattt ggacggcaag tatcagttca gcagcgacgt ttccgcgcaa
     5461 atcctgactt cgggactttt gggcgagcag tacatcgggc tgcagcaggg cggcgacacg
     5521 gaaaaccttg ctgccggcga caccatctcc gtaaccagtt ctgcaatggt tctggaaaac
     5581 cttatcggca aattcatgac gagttttgcc gaaaaaaatg ccgacggcgg caatgcggaa
     5641 aaagccgccg aataaacgta tgccatcata ttcaaactag gacacttaat catgaaaaaa
     5701 tcctccctca tcagcgcatt gggcatcggt attttgagca tcggcatggc atttgccgcc
     5761 cctgccgacg cggtaaacca aatccgtcaa aacgccactc aagtattgag catcttaaaa
     5821 agcggtgatg ccaacaccgc ccgccaaaaa gccgaagcct atgcgattcc ctatttcgat
     5881 ttccaacgta tgaccgcatt ggcggtcggc aacccttggc gcaccgcgtc cgacgcgcaa
     5941 aaacaagcgt tggccaaaga atttcaaacc ctgctgatcc gcacctattc cggcacgatg
     6001 ctgaaattaa aaaacgccaa cgtcaacgtc aaagacaatc ccatcgtcaa taaaggcggc
     6061 aaagaaatca tcgtccgcgc cgaagtcggc gtacctgggc aaaaacccgt caacatggac
     6121 ttcaccacct accaaagcgg cggtaaatac cgtacctaca acgtcgccat cgaaggcgcg
     6181 agcctggtta ccgtgtaccg caaccaattc ggcgaaatta tcaaagcgaa aggcgtggac
     6241 ggactgattg ccgagttgaa ggctaaaaac ggcagcaagt aatccataag ccatgccgcc
     6301 agactgaaga tggcatggat tttttcctac cgaacactat gcatacagaa ctcaacaacg
     6361 gaacactgca catcagcggc gacgtaaccg tcaaaaccct gactgccgcc gcctttaccc
     6421 gcttcagaca gcaatgtcgt ctgaaagaca cccgcgcggt tgatttgagc ggcgtcggac
     6481 gcgccgattc cgcctgcgtg tcgctgctgc tcgaagtgct gcgcggttgc aaaggcagcg
     6541 tcaggctgac cagcattccc gaatccgtgc gcgcgctgtc cgaactgtac gaaatcaaag
     6601 actggttgaa atcatgaaaa aaaccgccta cgccgccctc ctgctgatcg ggttcgcttc
     6661 cgcccctgca tttgcagaaa cccgccccgc cgacccttat gaaggctaca accgcgccgt
     6721 tttcaaattc aacgaccaag ccgaccgcta cattttcgcc cctgccgcgc gcggctaccg
     6781 caaagttgcg ccgaaacccg tccgcgccgg cgtgtccaat ttttttaaca acctgtgcga
     6841 cgtggtcagc ttcggcagca atatcttgcg cttggacatc aaacgcgcaa gcgaagacct
     6901 tgtccgcgtc ggcatcaaca ccactttcgg tttgggcggg cttatcgaca tcgccggcgc
     6961 gggcggcatt cccgacaata aaaacacctt gggcgacacg tttgcttcgt ggggatggaa
     7021 aaacagcaat tatttcgtgt tgcccgtctt agggccgtcc accgtccgcg acgcgctcgg
     7081 cacgggtatt acctccgttt attcgcccaa gaatatcgtc ttccgcaccc ctgtcggacg
     7141 ctggggcacg actgccgtat ccgccgtcag tacgcgcgaa ggtctgctcg atttgaccga
     7201 cagtctggac gaagccgcca tcgacaaata cagctacacg cgcgacctct atatgaaagt
     7261 ccgtgcgcgg cagaccggtg caacacctgc cgaaggtacg gaagataaca tcgacatcga
     7321 cgaattggtc gaaagtgccg aaaccggcgc ggcggaaact gccgttcaag aagattccgt
     7381 atccgaaaca caggcagaag cagcagggga agccgaaacg caacctggaa cacaacctta
     7441 aagccatgcc gtctgaaaat ccgtgttcgg acggcattcc cttctgtcgg aacggacagt
     7501 ccgaaaccac agattgggct ataatctctt ttttgcgcat accgcgcgac agcaaaggaa
     7561 aaaccatgta cgaagtcaac cgcagcgtat tcgtcctcat ccctttagaa cctttttgga
     7621 actggctgca aaccctgccg ggcaaccacc tcgacggact gactcttgaa gacatccaag
     7681 ccgacgccaa ttcctacctt gtccgcccgt gcgaaaccgc cgacgaagta tgggacgaaa
     7741 tcgaagcccg ttttgaagac attttcgccg ccgaacttgc cgactggtgc gaagacgaac
     7801 gcgagtggcc tgcgctcgat gccgacattt tcaacgaatg gttcgacatc cagctttcta
     7861 ccgtcatcac cgacctcgaa cacgaaccgc ttgcccgcga agccttccaa cccatcaacc
     7921 tgaactgatg aagctgaccg tccgcaacta ccatctcgac ggctacggcc atgtcaacaa
     7981 tgcgcgctac ctcgaatttt tcgaagaagc gcgctgggcg ttttttgaag aacgcggact
     8041 gctgcacgag ttggcaggcc tcatactgat tgtcgcccgc atcgacatcc gatacagccg
     8101 ccccgccgtc gaaggcgacg tattgcagtt ttcatgccgc ctgaaaaccc ccggcacgcg
     8161 ccgtattgtg ctgacccaga cgattacact gccaaacggc aaaaccgccg cagaagccga
     8221 catcaccctg atgcccgtcc acgccgccac acaacgcacc gtcagcctgc ccgccaccct
     8281 tgcccgcgca ttggaagcct tgtccgaatg aaaaaaatac tcaccgccgc cgtcgtcgca
     8341 ctgatcggca tcctccttgc catcgtcctc atccccgaca gcaaaaccgc gcccgccttc
     8401 tccctgcccg acctgcacgg aaaaaccgtt tccaacgccg acctgcaagg caaagtaacc
     8461 ctgattaatt tttggtttcc ctcctgtccg ggttgtgtga gcgaaatgcc caaaatcatt
     8521 aaaacggcaa atgactataa aaacaaaaac ttccaagtcc ttgccgtcgc ccagcccatc
     8581 gatccgatag aaagcgtccg ccaatatgtc aaagactacg gtttgccgtt taccgtcatg
     8641 tatgatgcgg acaaagctgt cggacaggcg ttcggcacac aggtttatcc gacttccgtc
     8701 cttatcggca aaaaaggcga aatcctcaaa acttatgtcg gcgaacccga tttcggcaaa
     8761 ctctaccaag aaatcgatac cgcgctggca caatagcgat gccgtctgaa gcgcaaaaaa
     8821 acagaaacga tgttcctgtt ttttcagatc atccgccccg acacgttcag acggcattca
     8881 accttccggc agattctttt tcaccactgc cggattgcct gccgccaaag agtagggcgg
     8941 aatgtctttt gtaaccaccg cgcctgcgcc cacgaccgaa ccgcgtccga cggttacgcc
     9001 cgccattaca atcaccctgt gccccggcca gacatcgtcc tccaacgtaa tcggacggat
     9061 ttccgtgtag ccctcaaagc gttttttgaa cggtcaaact tgtggttatt tgaataaaac
     9121 agacattccg gctccatcat cacatttttg ccgaccacca gcccacggca gatttcacag
     9181 tttgccccga tgcccgagcc gtcgcccaaa accgtatccg gaaacacata cgccccgcgt
     9241 tcgatattga ccccgcgtcc gatatgcgga gaaacccgcc gcgccaaaaa accgcgcacc
     9301 cgtctgccga cgatgccgat gccgcgcata tgtgacggcg gcaaccccga accggcaaaa
     9361 cgcagcagca ggaaaaagaa ttttgatccc atcaaacctc cctcaaaaga ac
//
LOCUS       DAWGNT010000064         9305 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.064, whole genome shotgun sequence.
ACCESSION   DAWGNT010000064 DAWGNT010000000
VERSION     DAWGNT010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9305
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.064"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(60..1616)
                     /gene="dnaA"
                     /locus_tag="WHR98_001101"
     CDS             complement(60..1616)
                     /gene="dnaA"
                     /locus_tag="WHR98_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEZ2307789.1"
                     /translation="MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGEEGGVWVVYGK
                     NQFACNMLKSQFAGKIEAVREELAAGRSAFVFKPGEGVRYEMAVVEGAVEPAEPSLHA
                     VSEEMPVQEVLLDELPSEEPVKSVQAKTAADILAERMKNLPHEPRHTAGSASRPESEV
                     LAKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSYNPF
                     FLYGSTGLGKTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQY
                     KQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKS
                     RFSWGLTLELEPPELEMRIAILQKKAEAAGISIEDEAALFIANLIRSNVRELEGAFNR
                     VGASSRFMNRPVIDIDLARTALQDIIAEKHKVITADIIIDAVAKYYRIKISDVLGKKR
                     TRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQD
                     YEKLLILIQN"
     gene            1904..2038
                     /gene="rpmH"
                     /locus_tag="WHR98_001102"
     CDS             1904..2038
                     /gene="rpmH"
                     /locus_tag="WHR98_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011289924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEZ2307790.1"
                     /translation="MKRTYQPSVTKRKRTHGFLVRSKTRGGRAVLAARRAKGRKRLAV
                     "
     gene            2041..2406
                     /locus_tag="WHR98_001103"
     CDS             2041..2406
                     /locus_tag="WHR98_001103"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEZ2307791.1"
                     /translation="MDYRFGRQYRLLKTDDFSSVFAFRNRRSRDLLQVSRSNGNGLDH
                     PRIGLVVGKKTAKRANERNYMKRVIRDWFRLNKNRLPPQDFVVRVRRKFDRATAKQAR
                     AELAQLMFGNPATGCRKQA"
     gene            2471..2692
                     /gene="yidD"
                     /locus_tag="WHR98_001104"
     CDS             2471..2692
                     /gene="yidD"
                     /locus_tag="WHR98_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEZ2307792.1"
                     /translation="MNFLLSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKK
                     YGAFKGGRLAIKRIARCHPFGGHGHDPVP"
     gene            2864..4501
                     /gene="yidC"
                     /locus_tag="WHR98_001105"
     CDS             2864..4501
                     /gene="yidC"
                     /locus_tag="WHR98_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEZ2307793.1"
                     /translation="MDFKRLTAFFAIALVIMIGWEKMFPTPKPVPAPQQAAQQQAVTA
                     SAEAALAPATPITVTTDTVQAVIDEKSGDLRRLTLLKYKATGDENKPFILFGDGKEYT
                     YVAQSELLDAQGNNILKGIGFSAPKKQYSLEGDKVEVRLSAPETRGLKIDKVYTFTKG
                     SYLVNVRFDIANGSGQTANLSADYRIVRDHSEPEGQGYFTHSYVGPVVYTPEGNFQKV
                     SFSDLDNDAKSGKSEAEYIRKTPTGWLGMIEHHFMSTWILQPKGGQSVCAAGDCRIDI
                     KRRNDKLYSASVSVPLAAIPAGAKAETAVNLYAGPQTTSVIANIADNLQLAKDYGKVH
                     WFASPLFWLLNQLHNIIGNWGWAIIVLTIIVKAVLYPLTNASYRSMAKMRAAAPKLQA
                     IKEKYGDDRMAQQQAMMQLYKDEKINPLGGCLPMLLQIPVFIGLYWALFASVELRQAP
                     WLGWITDLSRSDPYYILPIIMAATMFAQTYLNPPPTDPMQAKMMKIMPLVFSVMFFFF
                     PAGLVLYWVVNNLLTIAQQWHINRSIEKQRAQGEVVS"
     gene            complement(4582..5295)
                     /locus_tag="WHR98_001106"
     CDS             complement(4582..5295)
                     /locus_tag="WHR98_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEZ2307794.1"
                     /translation="MVSPVLYLIPTPLGTPDTPCLLPHEQRAVVGLTDFVVEAEKTAR
                     AHLKHLGVTMPIRELNLQTLNEHTDLKTLPELLKPLQEGRSMGIVSEAGCPAVADPGA
                     NLVALAHKHGFEVRPLVGPSSLLLALMASGANGQNFAFKGYLPSEKNERIQSLKALEQ
                     RSRQQNETQLFIETPYRNDVLLADAVENLHSETRLCTATDLTLPTQEIISQTVVQWRK
                     RKEMPNLKKRPTIFVMYAG"
     gene            complement(5354..5944)
                     /gene="maf"
                     /locus_tag="WHR98_001107"
     CDS             complement(5354..5944)
                     /gene="maf"
                     /locus_tag="WHR98_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation protein Maf"
                     /protein_id="HEZ2307795.1"
                     /translation="MGLELPLILGTSSVFRREQMERLGIAFQAASPDFDETPMLGESA
                     PQTALRLAEGKARSLAGRFPEALIVGADQVAWCDGRQWGKPMNLANAQKMLMHLSGRE
                     IEFYSAVVLLNTVTGRMQRHIDKTVVVMRKLDELHILRYLEREPDAVYCSCALKSEAL
                     GALLIERIESTDPNALIGLPVFRLVDFLKNEGVEVL"
     gene            6092..6595
                     /locus_tag="WHR98_001108"
     CDS             6092..6595
                     /locus_tag="WHR98_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003776445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEZ2307796.1"
                     /translation="MSDPNLIDPEIFAAEGQNLQGSFLLEELDERVSSHDYPADRQTK
                     ISFTLTGGRDRLQRLFLDLNVKADMPLICQRCIKPMPFMLDESSRIVLFSNEESLDES
                     MLADEELEGILIEKELDVRTLVEDQILMSLPFSPRHEDCGDNGTLEEVNRDKPNPFAV
                     LAGLKSS"
     gene            6629..6808
                     /gene="rpmF"
                     /locus_tag="WHR98_001109"
     CDS             6629..6808
                     /gene="rpmF"
                     /locus_tag="WHR98_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009889986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEZ2307797.1"
                     /translation="MAVQQNKKSPSKRGMHRSHDALTAPALSVDSTTGEVHRPHHISP
                     NGMYRGRKVVKAKGE"
     gene            6983..7510
                     /locus_tag="WHR98_001110"
     CDS             6983..7510
                     /locus_tag="WHR98_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEZ2307798.1"
                     /translation="MKQKIWYTYDDIHRVIKALAEKIRNADIKYDAMIAIGGGGFIPA
                     RMLRCFLEIPIYAVTTAYYDSDNEGQVTEEVKKVQWLDPVPEALRGKNVLVVDEVDDS
                     RVTMEFCLTELLKEDFGTIGVAVLHEKIKAKAGKIPEGIPYFSGITVEDWWINYPWDA
                     LDIDEHNRLAEAGRG"
     gene            7600..8655
                     /gene="plsX"
                     /locus_tag="WHR98_001111"
     CDS             7600..8655
                     /gene="plsX"
                     /locus_tag="WHR98_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEZ2307799.1"
                     /translation="MITLAVDAMGGDQGLAVTVPGATAFLQAHPDVRLIMTGDETQLR
                     QALTAAGAPMERIDICHTAQIVGMDEAPQSALKNKKDSSMRVAVNQVKEGKAQAAVSA
                     GNTGALMATARFVLKTIPGIERPAIAKFLPSDSEHVALALDLGANVDCTPEQLVQFAI
                     IGSELVHALHPEKGSPRVALLNVGTEDIKGTDAVKQTFKLLSSSKLNFIGNIESNSVL
                     YGEADVVVADGFVGNVMLKTIEGAVKFMSGAIRREFQSNLFNKLAAVAALPALKGLKN
                     KLDPRKFNGAILLGLRGIVIKSHGGTDETGFRYALEEAYHEAKSAGLSKIEQGVAEQL
                     AALETAKAVQNENADGL"
     gene            8791..9042
                     /locus_tag="WHR98_001112"
     CDS             8791..9042
                     /locus_tag="WHR98_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafI family immunity protein"
                     /protein_id="HEZ2307800.1"
                     /translation="MKTLEKRMKALDKQMMKFGKSLEGRLDARLIESALDYIHYSERF
                     LAFEILCTYIEDFDVRLTEQESREISFINKEFEIESTSD"
     gene            9069..>9305
                     /locus_tag="WHR98_001113"
     CDS             9069..>9305
                     /locus_tag="WHR98_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307801.1"
                     /translation="MKTSTVVFGGFFMADNGERIQIPVLENPDIREINHFFSVSNFEK
                     KTGVLVFRIIPEPEFGDTELTIYFEKGYYLPMIQT"
BASE COUNT         2422 a         2762 c         2135 g         1986 t
ORIGIN      
        1 ctatatcttt acccttcgga cggcatgggc aatatcatgt cgtctgaaaa cgttttccat
       61 cagttttgaa tcagaatcag cagcttttca taatcctgag ccaattccgg atcttcttcg
      121 cgcagtttcg ccactgccct gatgccgtgc ataacggtcg tatggtcgcg tccgccgaac
      181 gaatcgccga tagacggcag gctcaaagtg gtcagttctt tggtcaggct catcgccacc
      241 tggcgcggac gggcaatgtt tcgtgtccgt ttcttaccga gcacatcgct gattttgatg
      301 cggtaatatt tcgcaacggc atcaataata atatcggcgg tgatgacttt gtgcttctcg
      361 gcaataatgt cctgcaaagc agtacgcgcc aaatcgatgt cgatgacggg acggttcata
      421 aagcggctgc tcgctccgac gcggttgaac gcgccttcaa gctcacgcac gttggaacgg
      481 atcagattgg caatgaacag cgcggcttcg tcttcaatac tgatgcccgc cgcttccgcc
      541 tttttctgca aaatggcgat acgcatttcc aattcgggcg gctcgagttc caaagtcagt
      601 ccccatgaaa aacgggattt gaggcggtcg tccatacctt cgattttggc gggtaaaaca
      661 tcgcaagtga ggatgagctg ttttttctcg ttatggaaat gattgtacag atagaagaat
      721 tcctccatcg tacggtcttt gcctttgatg aactggatgt cgtcgataat cagcaggtcg
      781 tattgcttgt attgctgctt gaacacgtcg taggtattgt tgcgaaccgc cttcataaag
      841 ctgcggatat agtcgtccga atgcatatag cgcactttgg catcgggacg gtttttcaac
      901 agttcgttgc cgaccgcctg cacaaggtgg gttttaccca aacccgtact gccatagagg
      961 aagaacgggt tataactctg tcccggactt tccgcaatcg cctgcgcggc agctgccgca
     1021 aggcggttgc ccttgccttc taccaacgta tcaaatgtgt aatccggaga caggttggtt
     1081 tgttcgtaac gcgcctcttc cgcatcacgc tgcgcatccg tccgcgcttt cgcaagtacc
     1141 tccgattccg gacgggaagc agacccggca gtatggcgcg gctcatgcgg gaggtttttc
     1201 atacgttccg ccaaaatatc cgccgccgtt ttcgcctgta cggatttgac aggctcttca
     1261 gacggcagct cgtccaacag aacctcctgc acgggcattt cctccgacac cgcatgcaag
     1321 gacggctcgg caggttcgac agcaccttca accaccgcca tctcataacg cacgccttct
     1381 cccggtttga atacgaaggc ggaacggccg gcagccaact cttccctcac cgcttctatt
     1441 tttccggcaa actggctctt gagcatattg caggcaaact ggttcttgcc gtacaccacc
     1501 catacgccac cctcctcacc gacggtaagg ggcgcaatcc attgcgcaaa ctgcccttga
     1561 ggcaacatat cgtgaagacg gcggaggcac agcggccaaa actctgctag tgtcatagat
     1621 aagctcgaat cggtaaaaat gaaatcgaaa acaaagaaaa tataatattt tcaaaaagaa
     1681 aacaaatctg ttgaacgcac atcggttcaa aacgcgactg cccgattata ccgactcacg
     1741 aatattttat ccacaacccg tgcaaaaatt tatccacaga aaggcggcag aaatccgcag
     1801 gcaatcgggc aatcctcctg caaagtttct atattgattg acaaaagcgg caaattggag
     1861 tgtaattcac ggtttatcta tctaccgatt tttaggaaac atcatgaaac gcacttatca
     1921 accttccgtt accaaacgca aacgcaccca cggcttcctc gtgcgctcca aaacacgcgg
     1981 cggccgcgca gtattggcgg cgcggcgcgc caaaggccgc aaacgcctgg cggtataatt
     2041 ttggactacc gcttcggaag gcagtaccgc ttgttgaaaa cggatgattt ttcatccgtt
     2101 ttcgcattca gaaaccgccg cagccgcgac ctgctgcaag tttcgcgttc aaacggcaat
     2161 gggctggatc atccccgcat cggtctggtg gtcggcaaaa aaaccgccaa acgcgccaac
     2221 gaacgaaatt atatgaagcg cgttatccgc gactggttca gattgaacaa aaaccggctg
     2281 ccgccgcagg atttcgtcgt gcgcgtccgc cgtaaattcg acagggctac cgcaaaacag
     2341 gcaagggcgg aactggcaca actcatgttc ggcaaccccg caaccggatg caggaaacag
     2401 gcatgatcag aacggtactc tgcaggcaag gttcagacgg caacgggttt cccatacaag
     2461 gaacatcccg atgaacttcc tattgtccaa actcctgctg ggactgatac ggttctacca
     2521 atattgcatc agcccgctga ttccgccgcg ctgccgctat acgccgacct gttcgcaata
     2581 cgcggtcgaa gcggtcaaaa aatacggcgc attcaaaggc ggccggctcg ccatcaagcg
     2641 cattgcacgc tgccaccctt tcggcgggca cggacacgac cccgttccct gacccgacgc
     2701 aatattcaaa ttgcacgctt tccttttatt tcccatcggt ttctatataa tgccgtctga
     2761 aacttcgggc tggcggcacg accgtcgggt atgaagcccg cccttattcc ccgtctatcg
     2821 gaacacgcaa cctgcggcat ttccgaccat tcaggaaact cttatggatt ttaaaagact
     2881 cacggcgttt ttcgccatcg cgctggtgat tatgatcggc tgggaaaaga tgttccccac
     2941 tccgaagccc gtccccgcgc cccaacaggc agcacaacaa caggccgtaa ccgcttccgc
     3001 cgaagccgcg ctcgcgcccg caacgccgat taccgtaacg accgacacgg ttcaagccgt
     3061 cattgatgaa aaaagcggcg acctgcgccg gctgaccctg ctcaaataca aagcaaccgg
     3121 cgacgaaaat aaaccgttca tcctgtttgg cgacggcaaa gaatacacct acgtcgccca
     3181 atccgaactt ttggacgcgc agggcaacaa cattctaaaa ggcatcggct ttagcgcacc
     3241 gaaaaaacag tacagcttgg aaggcgacaa agttgaagtc cgcctgagcg cgcctgaaac
     3301 acgcggtctg aaaatcgaca aagtttatac tttcaccaaa ggcagctatc tggtcaacgt
     3361 ccgcttcgac atcgccaacg gcagcggtca aaccgccaac ctgagcgcgg actaccgcat
     3421 cgtccgcgac cacagcgaac ccgagggtca aggctacttt acccactctt acgtcggccc
     3481 tgttgtttat acccctgaag gcaacttcca aaaagtcagc ttctccgact tggacaacga
     3541 tgccaaatcc ggcaaatccg aggccgaata catccgcaaa accccgaccg gctggctcgg
     3601 catgattgaa caccacttca tgtccacctg gatcctccaa cccaaaggcg gacaaagcgt
     3661 ttgcgccgct ggcgactgcc gtatcgacat caaacgccgc aacgacaagc tgtacagcgc
     3721 aagcgtcagc gttccccttg ccgccatccc ggccggcgcg aaagccgaaa ccgccgtcaa
     3781 cctgtatgcc ggcccgcaaa ccacttccgt catcgcaaac atcgccgaca acctgcaact
     3841 ggccaaagac tacggcaaag tacactggtt cgcctccccc ctcttttggc ttttgaacca
     3901 actgcacaac atcatcggca actggggctg ggcgattatc gttttaacca tcatcgtcaa
     3961 agccgtactg tatccattga ccaacgcctc ttaccgttcg atggcgaaaa tgcgtgccgc
     4021 cgcacctaaa ttgcaagcca tcaaagagaa atacggcgac gaccgtatgg cgcaacaaca
     4081 agcgatgatg cagctttaca aagacgaaaa aatcaacccg ctgggcggct gtctgcctat
     4141 gttgttgcaa atccccgtct tcatcggctt gtactgggca ttgttcgcct ccgtagaatt
     4201 gcgtcaggca ccttggctgg gctggattac cgacctcagc cgttccgacc cctactacat
     4261 cctgcccatc attatggcgg caacgatgtt cgcccaaacc tatctgaacc cgccgccgac
     4321 cgacccgatg caggcgaaaa tgatgaaaat catgccgttg gttttctccg tcatgttctt
     4381 cttcttccct gccggtctgg tattgtactg ggtagtcaac aacctcctga ccatcgccca
     4441 gcaatggcac atcaaccgca gcatcgaaaa acaacgcgcc caaggcgaag tcgtttccta
     4501 aatgccgcag catgaaaaat gccgtctgaa acctgttcag acggcatttt tattgttcac
     4561 cccctatcgg ggcggaaatc ttcaacctgc atacatcaca aaaatcgtcg ggcgtttttt
     4621 cagattgggc atttcttttc tttttcgcca ctgcacaacc gtctggctga tgatttcctg
     4681 agtcggcaac gtcaaatccg tagccgtaca caaacgcgtt tcagaatgca ggttttccac
     4741 cgcatccgcc aacaacacat cgttgcgata cggcgtttcg ataaacagct gcgtttcatt
     4801 ctgctggcgc gaacgttgtt ccaaagcctt caaactctga atccgctcat ttttttcaga
     4861 cggcaaataa cccttaaacg caaagttctg cccattcgca cccgaagcca tcagcgccag
     4921 caacaagctg gacggaccga ccaaaggccg tacttcaaaa ccgtgtttat gcgccaatgc
     4981 caccaaattc gcacccggat cggcaacagc cgggcaaccc gcctcgctga caatgcccat
     5041 actgcgccct tcttgcaaag gtttcagcaa ttccggcaaa gtcttcaaat ccgtgtgttc
     5101 gttcagcgtt tgcaaattca gttcgcggat aggcattgtc acgcccaaat gtttcaaatg
     5161 tgcgcgcgcc gttttttccg cttccacgac aaaatccgtc agcccgacaa ccgctcgttg
     5221 ttcatgcggc aacaggcacg gcgtatcggg cgtacccaaa ggcgtaggaa tcaaatacaa
     5281 aacaggagac accattccct cactcatcag ttaaaaatgc cgtctgagcc tttcagacgg
     5341 cataaacggg cagttacaga acctccacgc cctcattttt caaaaaatca accagacgga
     5401 aaaccggcaa accgattaaa gcattcggat cggtactctc aatccgttcg atcaacaatg
     5461 cacccaaagc ctcgctcttc aacgcacacg agcaataaac cgcatcaggc tcgcgctcca
     5521 aatagcggag gatgtgcagc tcgtccaact tcctcatcac gaccaccgtc ttatcgatat
     5581 gccgctgcat cctgcccgta accgtattta gcagaacgac cgcgctgtaa aactcaatct
     5641 ccctgccgct caaatgcatc agcatctttt gcgcgttggc aaggttcatc ggcttgcccc
     5701 actgcctgcc gtcgcaccac gccacctggt ccgcaccgac aatcaacgcc tcggggaaac
     5761 gtccggccaa cgacctcgcc ttaccctcgg caaggcgcaa tgccgtctga ggggcggatt
     5821 cccccaacat cggcgtttcg tcaaaatcgg gggacgccgc ctgaaaggca atgccgagcc
     5881 tttccatctg ttcgcggcgg aaaaccgaac tcgtacccaa aatcaaaggc agttccaaac
     5941 ccatcccatc ctccttaccg ttgaaaacac gcccgaaggg gcagtaaaat ccagccatgc
     6001 gccgaaacac ggatacccgc cttcggcgta ccgcaacatt tttcttaaaa atattgacgt
     6061 tagaacatct aaattatatc atatcccgtt tatgtcagac cctaatttga ttgacccgga
     6121 aatttttgcc gccgaagggc agaacctgca aggcagtttt ctgctggaag aattggatga
     6181 acgcgtcagt tcgcacgatt atcccgccga caggcagacc aaaatatcgt ttacactgac
     6241 cggcggtcgc gaccggctgc aacgcctgtt cctcgacctg aacgtcaaag ccgatatgcc
     6301 cctgatttgc cagagatgta tcaaacccat gccgttcatg cttgatgaaa gcagccgtat
     6361 cgtcctgttt tccaacgaag agtccttgga cgaatccatg cttgccgacg aagaactcga
     6421 aggcatactg attgaaaaag aactcgacgt gcgcacattg gtagaagacc aaatcctgat
     6481 gtccctgccc ttttcgccgc gacacgaaga ctgcggcgac aatgggacac tggaagaagt
     6541 caatcgggac aaacccaacc cctttgctgt tttggcaggt ttgaaaagca gttaattagg
     6601 acacagttta tttatctagg agcttgaaat ggccgttcaa caaaacaaaa aatccccttc
     6661 caaacgcggt atgcaccgtt cgcacgacgc gctgaccgcg cctgcactgt ctgtcgacag
     6721 cacaaccggc gaagtacacc gcccgcacca catctccccc aacggtatgt accgcggccg
     6781 caaagtggtc aaagccaaag gcgaataatc cctattcgac tgactgaaaa agccagaaca
     6841 ttgccatgca attactggct ttttttgcat tggacgcacc atccgtccaa actttcgcca
     6901 tacgtcaaca cacaggggca aagcgttccg tataataccc cgtgaaaata ttccaaaagc
     6961 cccaaccacc aaggaaattc cgatgaaaca gaaaatctgg tacacctacg atgacatcca
     7021 ccgcgtcatc aaagcattgg cagaaaaaat ccggaacgcc gacatcaaat acgatgccat
     7081 gattgccatc ggcggcggcg gctttattcc ggcacgtatg ctgcgctgtt ttctggaaat
     7141 tccgatttat gccgtaacca ccgcctatta cgacagcgac aacgaaggac aggttacaga
     7201 agaagtcaaa aaagtccaat ggctcgaccc cgttcccgaa gccctgcggg gcaaaaacgt
     7261 ccttgttgtc gatgaagtgg acgacagccg cgtaaccatg gaattttgcc tgacagagct
     7321 gcttaaagaa gacttcggca ccatcggcgt cgccgtactg cacgaaaaaa tcaaagccaa
     7381 agcaggtaaa atccccgaag gcattcccta tttcagcggc atcaccgtag aagactggtg
     7441 gatcaactat ccatgggacg cactcgacat cgacgaacac aaccgccttg ccgaggccgg
     7501 ccgaggctga ccctttcaga cggcatattt tccgaaccga tgccgtctga agcccgcacg
     7561 acccctgccg cagaccgaaa acctaccgga gaaaccccta tgattacatt ggccgtagat
     7621 gccatgggcg gcgatcaagg acttgccgtt accgtacccg gcgcaaccgc attcctccaa
     7681 gcacaccccg atgtccgcct gattatgacc ggcgacgaaa cgcaactgcg ccaagccctg
     7741 accgcggcag gcgcaccgat ggaacgcatc gacatctgcc acaccgcaca aatcgtcggc
     7801 atggacgaag cgccgcaatc cgccctgaaa aacaaaaaag actcctccat gcgcgtcgcc
     7861 gtcaaccaag ttaaagaagg caaagcccaa gccgccgtat ccgcaggcaa cacgggtgcg
     7921 ctcatggcaa ccgcacgttt cgtcctcaaa accattcccg gcatcgaacg ccccgccatc
     7981 gccaaattcc tgccttccga cagcgaacac gttgccctgg cgttggattt gggtgccaac
     8041 gttgactgca cgcccgaaca actggttcaa tttgccatca tcggcagcga gctggtacat
     8101 gcgctgcatc ctgaaaaagg cagcccgcgt gtcgcccttt tgaacgttgg tacagaagac
     8161 attaaaggta cagatgccgt caaacaaacc tttaaactgt tgagcagcag caaactcaac
     8221 ttcatcggca atatcgaaag caacagcgtt ttgtatggcg aagccgatgt cgttgtcgca
     8281 gacggatttg tcggcaacgt tatgctcaaa accatcgaag gcgcggttaa attcatgagt
     8341 ggtgccatcc gccgcgaatt ccaaagcaac ctgttcaaca aacttgccgc cgttgccgcc
     8401 ctacccgccc tcaaagggct gaaaaacaaa ctcgatccgc gcaaattcaa cggggccatc
     8461 ctgctcgggc tgcgcggcat cgtcatcaaa agccacggcg gcacagacga aaccggtttc
     8521 cgctacgcac tcgaagaagc ctaccacgaa gccaagtccg ccggcctttc caaaatcgaa
     8581 caaggcgttg ccgaacaact cgccgcactc gaaactgcca aagccgtcca aaacgaaaat
     8641 gccgacggtc tgtaacacac acgatgccgt ctgaacgccc ccgccccttt cagacggcat
     8701 ccgcccgcac caaacctgcg ggcgcggacg gcgatgcgcc tgtccggcac ttcccaaata
     8761 cttccctgta aaataaggag tatttgaaaa atgaagacat tagaaaaacg gatgaaagct
     8821 ctagacaaac agatgatgaa gttcggaaaa tcccttgaag gcaggcttga tgcccgtctg
     8881 attgaatccg cattggatta tattcattat tcggaacgtt ttttggcttt tgaaatcctg
     8941 tgtacttata tcgaagattt cgatgtccgg ctgacggaac aagaatcccg ggaaatttct
     9001 tttatcaaca aggaatttga gatagaaagc acgtccgatt aaccaataaa gccaatgggt
     9061 tgataaacat gaaaacatcg acggtcgttt ttggcggatt ttttatggca gacaacggag
     9121 agcgaatcca aatccccgtt ttggaaaatc ctgacattag ggaaatcaat cacttttttt
     9181 ccgtatcaaa ttttgagaaa aaaaccggcg tccttgtttt cagaatcatc cccgagccgg
     9241 aatttggcga taccgaatta actatctatt ttgaaaaagg atattatttg ccaatgattc
     9301 aaaca
//
LOCUS       DAWGNT010000065         9291 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.065, whole genome shotgun sequence.
ACCESSION   DAWGNT010000065 DAWGNT010000000
VERSION     DAWGNT010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9291
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.065"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            85..903
                     /gene="opc"
                     /locus_tag="WHR98_001114"
                     /gene_synonym="opcA"
     CDS             85..903
                     /gene="opc"
                     /locus_tag="WHR98_001114"
                     /gene_synonym="opcA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin Opc"
                     /protein_id="HEZ2307802.1"
                     /translation="MKKTVFTCAMIALTGTAAAAQELQTANEFTVHTDLSSISSTRAF
                     LKEKHKAAKHIGVRADIPFDANQGIRLEAGFGRSKKNIINLETDENKLGKTKNVKLPT
                     GVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWLAKV
                     HADLLSQLGNGWYINPWSEVKFDLNSRYKLNTGVTSLKKDINQKTNGWGFGLGANIGK
                     KLGESASIEAGPFYKQRTYKESGEFSVTTTSGDVSLTIPKTSIREYGLRVGIKF"
     gene            1066..1710
                     /locus_tag="WHR98_001115"
     CDS             1066..1710
                     /locus_tag="WHR98_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEZ2307803.1"
                     /translation="MLASAIDFILHIDQHLLALSAQYGVWIYAILFLIVFCETGLIVT
                     PLLPGDSLLFAAGGIAALGGMDIHLMVALLSLAAILGDALNFTVGKYFGGRLFANPDS
                     KIFRREYLDKTHRFYEKHGGKTIIIARFMPIVRTFAPFVAGMGKMHYAKFIRYNIIGG
                     LLWVILFSYAGYFFANFPVVKNNLGLVMGGIIIVSVLPGAVEIARAKLAVKSKR"
     gene            1729..3639
                     /locus_tag="WHR98_001116"
     CDS             1729..3639
                     /locus_tag="WHR98_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEZ2307804.1"
                     /translation="MNILSVENASFAIGHVALLDKTSFQLDSGEKVGLIGRNGAGKSS
                     FLKILAGLQKLDDGQIIVQNNLKIVYVPQESFFDKDATVFDTVAEGLGEIRDLLRRYH
                     HVSHDLEHNSDDVLLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENEKIGNLSGG
                     QKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDN
                     IATRIVELDRGILRSYPGSFSKYSEKKAQELAVEAEHNRLFDKFHAQEEAWIRKGIEA
                     RRTRNEGRVRRLEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAELEHASFAYGGKVI
                     MDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSKQEVAYFDQFRS
                     ALNENDTVFYTLGQGNDYVEVGGKKKHVMSYLEDFLFPPARAQSPVSSLSGGERNRLL
                     LAKLFTRPANILILDEPTNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSI
                     IFEGNGRLKEYIGGYQDYIDAKSREAKIQTESAPKTADAEPVKEKPKANRTVKLSYKE
                     QRELDALPDEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERW
                     ELLETKQNGNAV"
     gene            3660..4025
                     /locus_tag="WHR98_001117"
     CDS             3660..4025
                     /locus_tag="WHR98_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307805.1"
                     /translation="MFKRPEEIIVLILAVLWIAGTYFLAALFGADAYTVLKITALTLL
                     WSAASFLLWQKNLSRHIWPLLLGCLTACWWPYLNQSVAPGSLPWYASWTFKTILALIP
                     VTAGYLFKWKQYRQRKTKP"
     gene            4136..5611
                     /locus_tag="WHR98_001118"
     CDS             4136..5611
                     /locus_tag="WHR98_001118"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HEZ2307806.1"
                     /translation="MISKQEYQAQAAQGYNRIPLVQELLADLDTPLSLYLKLANRPYT
                     YLLESVVGGERFGRYSFIGLPCSHYLKASGKHVDVYQNGEIVEQHDGNPLPFIEAFHN
                     RFKTPEIPSLPRFTGGLVGYFGYETIYNFEHFAHRLKNTTKADPLGTPDILLMLSQEL
                     AVVDNLSGKIYLIVYADPSQPDGYERARERLEDIRTQLRQSCAIPLSLGSKHTEAVSE
                     FGEEPFKACVNKIKDYIFAGDCMQVVPSQRMSMEFTDSSLALYRALRTLNPSPYLFYY
                     DFGDFHIVGSSPEILVRRERDDVIVRPIAGTRLRGKTPAEDLANEQDLLSDAKEIAEH
                     VMLIDLGRNDVGRISKTGEVKVTDKMVIEKYSHVMHIVSNVEGRLKDGMTNMDILAAT
                     FPAGTLSGAPKVRAMEIIEEVEPSKRGIYGGAVGVWGFNNDMDLAIAIRTAVVKNNTL
                     YVQSGAGVVADSDPASEWQETQNKARAVIHAAQMVQEGLDK"
     gene            5608..6153
                     /locus_tag="WHR98_001119"
     CDS             5608..6153
                     /locus_tag="WHR98_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1643 domain-containing protein"
                     /protein_id="HEZ2307807.1"
                     /translation="MTYEKLYELRQTLRPTTKDGLYTDNEKSREILTVRWSGNTENPK
                     NFSAVAIGINPSKANDERSDKTLTQLARFLDMYGFTNFKMLNIFSSYSTQQTGIRANT
                     QTDFSKFKGCLEDADMIILAWGTDRGAYKDEKNRILEFLKAEKFMEKVFCISETGNSS
                     DTRHPSRISYSYQLVQFEESA"
     gene            6150..7286
                     /locus_tag="WHR98_001120"
     CDS             6150..7286
                     /locus_tag="WHR98_001120"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEZ2307808.1"
                     /translation="MKNISLSPPAMLGILGGGQLGRMFTVAAKTMGYKVTVLDPDPDA
                     PAAEFADCHLCAPFNDQAALDELAKCAAVTTEFENVNADAMRFLAKHTNVSPGSDCVA
                     IAQNRIQEKAWIRKAGLQTAPYQAICKAEDITEESIQFLPGILKTATLGYDGKGQIRV
                     KTVDELKAAFAEHRGVDCVLEKMVDLRGEISVIVCRLNNDNVQTFDPAENIHENGILA
                     YSIVPARLSADIQQQARQMAQRLADELNYVGVLAVEMFVVGDTHELVVNEIAPRPHNS
                     GHHTVDACAADQFQQQVRLMCNLPPADTKLLSSCCMANILGDVWQEDGGEPDWFPLQS
                     RPDAHLHLYGKKTAHKGRKMGHFTVLTTDSDTAFQEAKKLHQSL"
     gene            7333..7815
                     /locus_tag="WHR98_001121"
     CDS             7333..7815
                     /locus_tag="WHR98_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEZ2307809.1"
                     /translation="MSLLTLLRPATVQDCKDIFKVHLHSVQYTCILSYNEHALKVWEG
                     LLNTESYLPTISDPDKALWVAEYKGNIQGFFQIDCQEAQLDALYVHPLFHNLGLGTAL
                     LHQAETIAHKSGLSFLKLYASLNSVPFYLLNRYESLGSAVLQLDPSIKIKCELMRKHL
                     "
     gene            7921..8976
                     /locus_tag="WHR98_001122"
     CDS             7921..8976
                     /locus_tag="WHR98_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEZ2307810.1"
                     /translation="MKTYAPALYTAALLTACSPAADSNHPSGQNAPANTESDGKNITL
                     LNASYDVARDFYKEYNPLFIKTYQSEHPGTSVSIQQSHGGSSKQALSVANGLQADVVT
                     MNQSSDIDLLEKKGLVEKGWQQALPDHAAPYTSTMVFLVRKNNPKQIRDWNDLAKDGV
                     NIVIANPKTSGNGRYAFLGAYGYGLKATNGNEQEAQKLVASILKNTPVFENGGRAATT
                     TFTQRNIGDVLITFENEANYVSKKLTQGQFEIVYPSYTISAESPVAVVNSVVAKKGTQ
                     KTARAYLEYLWSEPAQELAASLYLRPRNPEVLARHKADFPDLDSFSPEEKFGGWDNIM
                     KTYFADGGIFDRLTAQK"
     gene            8973..9185
                     /locus_tag="WHR98_001123"
     CDS             8973..9185
                     /locus_tag="WHR98_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307811.1"
                     /translation="MTAMPSEPPFRRHSTHQNRKTAPKIIITRHNGKPDTKPNTAAKM
                     PSEAVGATILIWGALQGRITFLNHPF"
BASE COUNT         2578 a         2644 c         2045 g         2024 t
ORIGIN      
        1 cttaagaata taattgtaag cgtaacgatt atttacgtta tgttaccata tccgactaca
       61 atccaaattt tggagatttt aactatgaaa aaaacagttt ttacatgtgc catgattgcc
      121 ctgaccggta ctgccgccgc tgcacaagag cttcaaaccg ctaatgagtt taccgtccac
      181 accgacctct cttccatttc ttcaactcgt gctttcctga aagaaaaaca caaagctgcc
      241 aaacacatcg gcgtacgtgc tgatattcct tttgatgcca accaaggcat ccgcttggaa
      301 gccggtttcg ggcgcagcaa aaaaaatatt attaatttgg aaacagatga gaacaagctg
      361 ggtaagacta aaaatgtaaa actgcccacc ggcgttcctg aaaaccgtat cgatctttac
      421 acaggctaca cctataccca aacgttaagt gattctttaa atttccgtgt gggtgccggc
      481 ttgggttttg aatcttcaaa agacagcatt aaaaccacca agcatacgct tcacagcagc
      541 cgtcagtcgt ggttagccaa agttcacgcg gatttgcttt cccaactggg taacggctgg
      601 tatatcaacc cttggtctga agtgaaattt gacctcaatt cccgctataa attaaacacc
      661 ggcgttacca gtctcaaaaa agacatcaat caaaaaacca acggctgggg ctttggattg
      721 ggtgcaaata ttggtaaaaa actgggcgaa tccgccagca tcgaggcggg gccgttctac
      781 aaacaacgca cttacaaaga atccggcgag tttagtgtaa caaccacgag tggcgacgta
      841 tcgctcacca tcccgaaaac cagtattcgt gaatacggct tgcgcgtcgg cataaaattc
      901 tgatgatttg aaatcatcat tgtcacttta aatgccaaac cgcaaactat tttggtttgc
      961 ggtttttacg tgaaatgaat ttgaatagcc gatgccgtct gaaaatttca gacggcattt
     1021 ttccaatcgg ttaaaatacg cggtttgttt ttttaggaac gcgccgtgct tgcctccgcc
     1081 atcgacttca tcctccatat cgaccaacac ctgctcgcgc tgtcggcgca atacggtgtg
     1141 tggatttatg cgattctgtt tttgattgtt ttttgcgaaa ccggcctgat tgttacgccc
     1201 ttactgcccg gcgattcgct gctgtttgcc gccggcggga ttgccgcgct gggcggtatg
     1261 gatattcatt tgatggttgc attattaagc cttgccgcca tactcggcga cgcgctcaat
     1321 tttaccgtcg gcaaatattt cggcggcagg ctgttcgcca accccgattc taaaatcttc
     1381 cgacgtgaat atctcgataa aacccaccgt ttttacgaaa aacacggcgg caaaaccatc
     1441 atcattgccc gttttatgcc catcgtccgc accttcgccc ccttcgtcgc cggtatgggg
     1501 aaaatgcact atgccaaatt tatccgctac aacatcatcg gtggcttgtt gtgggttatc
     1561 ctgttttctt acgcgggcta tttctttgcc aacttccccg tcgtaaaaaa caatctgggc
     1621 ttggtgatgg gcggcatcat tattgtttcc gtcctgccgg gtgcggttga aattgcccgc
     1681 gccaaacttg cggtaaaatc caaacggtaa ctgttgagaa tttgtatcat gaatatatta
     1741 tctgtagaaa acgcttcttt tgccatcggc cacgttgcct tgctcgacaa aacttctttt
     1801 caactcgaca gcggcgaaaa agtcggctta atcggacgca acggcgcagg caagtcttcg
     1861 tttttaaaaa tcctcgccgg tttgcaaaag ctcgacgacg ggcagattat tgttcaaaac
     1921 aacctcaaaa tcgtttatgt accgcaggaa tccttttttg ataaggacgc aaccgtattt
     1981 gataccgttg ccgaaggttt gggcgaaatt cgcgatttat tgcgccgtta tcatcatgtc
     2041 agccatgatt tggagcacaa ttcagacgac gttttattaa aagaactcaa cgaattacaa
     2101 ctcgaaatcg aagcgaagga cggctggaag ctggatgcgg cagtcaagca gactttgggc
     2161 gaactcggtt tgccggaaaa cgaaaaaatc ggcaaccttt ccggcggtca gaaaaagcgt
     2221 gtcgccttgg cgcaggcttg ggtgcagaag cccgacgtat tgctgctgga cgaaccgacc
     2281 aaccatttgg atattgacgc gattatctgg ttggaaaacc tgctcaaggc gtttgaaggc
     2341 agcttggtcg tgattaccca cgaccgccgt tttttggata atatcgccac gcggattgtc
     2401 gaacttgacc gcggcattct acgttcctat cccggctcgt tctctaaata cagtgagaaa
     2461 aaagcgcaag agttggcagt cgaggcggaa cataaccgct tgtttgacaa atttcatgct
     2521 caggaagaag cgtggatacg caaaggcatt gaagcgcgcc gtacccgtaa cgaaggccgc
     2581 gtgcgccgct tggaagagct gcgccgccaa cgtgcagaac gccgcaacgt gcagggacag
     2641 gtcaacttta agctcgacag cggtgagaag agcggcaaaa tcatcgccga attggagcac
     2701 gcttcgtttg cctacggcgg caaagtcatt atggacaaat tctccgccat cttgcagcgc
     2761 ggcgacaaaa tcggcttaat cggtccaaac ggcatcggca aaaccacatt tttaaaactg
     2821 attttgggcg aattgcagcc gacctacggc agaatccgta tcggcagcaa gcaggaagtc
     2881 gcctatttcg accagttccg cagcgcgttg aatgaaaacg acaccgtgtt ttacacgctc
     2941 ggacagggca atgattacgt tgaagtcggc ggtaagaaaa agcatgtgat gagctatttg
     3001 gaagatttcc tgttcccccc tgcccgcgcg caaagtcccg tttcatcgct ctccggcggc
     3061 gaacgcaacc gccttttgct ggcaaaactc tttacccgtc ctgctaatat tttgattttg
     3121 gacgaaccga ccaacgactt ggatatcgat acccaagagc tgcttgaaga tttgctgcgc
     3181 gattatcaag gcacggtatt ccttgtctca cacgaccgta tgttcctcga taacgtgatt
     3241 acccaaagca ttatttttga aggaaatgga aggttaaaag aatatatcgg cggctatcag
     3301 gactacatcg acgcaaaatc acgcgaagcg aagattcaga cggaatccgc acccaaaaca
     3361 gccgatgccg aaccggtgaa agaaaaaccc aaagccaacc gcacggtcaa actgtcctac
     3421 aaagaacagc gcgaactcga cgccctgccc gacgaaatcg ccgccttgga agccgaacag
     3481 gcagaaatca acgcgcagct ttccgatccc gaaatcttca aagattacga aaaagccggc
     3541 gcactgcaaa gccgcgccga agaaatcgaa atgctgcttt tggaaaagct ggaacgctgg
     3601 gagctgctgg aaaccaaaca gaacggcaat gccgtctgaa atcaaacagg aagaaaaaaa
     3661 tgttcaaacg acctgaagaa atcattgtcc tgatacttgc cgtcctctgg attgccggta
     3721 cgtattttct cgccgccctg tttggagcgg atgcttatac cgtgttaaaa atcactgccc
     3781 ttaccctgct ttggtctgcc gcatcattcc tcctttggca aaaaaacctc agccggcata
     3841 tctggccgct gctgctcggc tgcctgactg cctgttggtg gccgtatctg aatcaatcgg
     3901 tcgcacccgg ttctttacct tggtatgcat catggacgtt caaaaccatc ttagccctga
     3961 ttcccgtaac cgcaggttat ctgtttaaat ggaaacaata ccggcagcgc aaaacaaagc
     4021 cgtaagcccg tccttttcag acggcatctc cggtcagact gtcaacaatt ccgataaaat
     4081 gctatactcg cgcccgttgc cgcgccgtcc gaaaccgccc tttgggaaag cagaaatgat
     4141 cagcaaacaa gaataccaag cccaagccgc tcaaggctac aaccgcatcc cgctcgtgca
     4201 agaactcctt gccgatttgg atacgccgct ttccctctat ctcaaactcg ccaaccgccc
     4261 ctatacctac ctgctcgaat ccgttgtcgg tggcgaacgt ttcggccgct attcttttat
     4321 cggcctgcct tgcagccact atctcaaagc cagcggcaaa cacgtcgatg tttatcaaaa
     4381 cggcgaaatt gtcgagcaac acgacggcaa ccccctgccc tttatcgaag ccttccacaa
     4441 ccgcttcaaa acacccgaaa tcccaagcct gccgcgcttt accggcggac tggtcggcta
     4501 cttcggttac gaaaccatct acaattttga acacttcgcc caccgcctga aaaacaccac
     4561 caaagccgac ccgctcggca cgcccgacat cctcctgatg ctctcgcaag agcttgcagt
     4621 agtggataac ctaagcggta aaatctacct gattgtttac gccgatccgt cgcagcccga
     4681 cggctacgaa cgcgcacgcg aacgcctcga agacatccgt acacagttac gccaaagttg
     4741 cgccatcccg ctttcgctcg gcagcaaaca caccgaagcc gtcagcgaat tcggcgaaga
     4801 gccgttcaaa gcctgcgtta acaaaatcaa agactacatc tttgcaggcg actgcatgca
     4861 ggttgtcccc agccagcgca tgagcatgga attcaccgac agctcgctcg ccctctaccg
     4921 cgccttgcgc acgctcaacc cttcgcctta tctcttctac tacgatttcg gcgatttcca
     4981 catcgtcggc tcctcgcccg aaatcctcgt ccgccgcgaa cgcgacgatg tcatcgtccg
     5041 ccccatcgcc ggcacgcgcc tgcgcggcaa aacccccgcc gaagaccttg ccaacgaaca
     5101 agatttgtta agcgatgcca aagaaatcgc cgaacacgtc atgttgattg acttaggacg
     5161 caacgacgtc ggccgcatca gtaaaaccgg cgaagtcaaa gttaccgaca aaatggtgat
     5221 tgaaaaatac tcccatgtaa tgcacatcgt ttccaacgtc gaaggccgtc tgaaagacgg
     5281 catgaccaac atggacatcc tcgccgctac cttccctgcc ggcacactct ccggcgcacc
     5341 caaagtccgc gccatggaaa tcatcgaaga agtcgaacca agcaaacgcg gcatctacgg
     5401 cggtgccgtc ggcgtatggg gtttcaacaa cgacatggat ttggcaatcg ccatccgcac
     5461 cgccgtagta aaaaacaaca cgctatacgt ccaaagcggc gcgggcgtgg ttgccgactc
     5521 cgatccggcc tccgaatggc aggaaacaca aaacaaagcc cgagccgtca tacacgccgc
     5581 gcagatggtg caggaagggt tggataaatg acttatgaaa aactttatga gcttcgccaa
     5641 acactcagac cgactaccaa agacggtctc tatacagata atgaaaaaag tcgagaaatc
     5701 ctaacggtta gatggagcgg caacacagaa aatcctaaaa atttctcagc tgttgctata
     5761 ggaattaatc caagtaaagc aaatgatgaa agaagcgaca aaacccttac ccaacttgca
     5821 cgtttcttgg atatgtacgg ttttaccaac ttcaaaatgt taaatatttt ttccagttac
     5881 tctacacagc aaacaggaat tagggcaaac acccaaaccg atttttccaa atttaaagga
     5941 tgtttggaag atgctgatat gattattctt gcatggggta cagaccgcgg tgcttataag
     6001 gatgaaaaaa acagaatact ggaatttcta aaagcagaaa aatttatgga aaaagtattc
     6061 tgtatttctg aaactggtaa ttccagcgat acaagacatc cgtcaagaat tagttatagc
     6121 tatcaacttg tacaatttga agagtcagca tgaaaaacat atctctttct ccgcccgcca
     6181 tgcttggcat cctcggcggc ggacaattag gcagaatgtt taccgttgcc gccaaaacca
     6241 tgggctacaa agtaaccgtt ctcgaccccg atccggacgc gccggcagca gaatttgccg
     6301 actgtcattt atgcgcgccg tttaacgacc aagctgcttt ggacgaattg gcaaaatgcg
     6361 cggcggtgac cactgaattt gaaaacgtca atgccgatgc gatgcgtttt ctcgccaaac
     6421 acaccaatgt ttcccccggc agcgactgcg ttgccatcgc gcaaaaccgc attcaggaaa
     6481 aggcatggat acgcaaagca ggattgcaaa ccgcgccgta tcaagcaatt tgcaaagccg
     6541 aagacatcac tgaagaaagc atacaatttc tgcccggcat cctgaaaacc gctacattgg
     6601 gctatgacgg caaaggccaa atccgcgtca aaacggtgga tgaactcaaa gccgcgtttg
     6661 ccgaacaccg cggcgtggat tgcgttttgg aaaaaatggt ggacttgcgc ggcgaaattt
     6721 ccgttatcgt atgccgtctg aacaatgaca acgtgcaaac tttcgatcct gccgaaaaca
     6781 ttcacgaaaa cggtatcctc gcctactcca tcgtcccagc ccgactgagt gccgacattc
     6841 agcaacaggc gcgacaaatg gcgcagcgtt tggccgatga attgaactac gtcggcgtat
     6901 tggcggtaga aatgtttgtt gtcggcgaca cgcatgaatt ggtcgtcaac gaaatcgcgc
     6961 cgcgtccgca caattccggc caccataccg tcgacgcctg cgcggcagac caattccagc
     7021 aacaggtccg cctgatgtgc aacctgccac ctgctgacac caaattgctg agttcttgct
     7081 gtatggcgaa tattttgggc gacgtttggc aggaagacgg cggcgaaccg gattggtttc
     7141 ccctgcaaag ccggccggac gcgcacctgc acctttacgg caaaaaaacc gcgcacaaag
     7201 ggcggaaaat gggacacttt accgttttaa ccaccgattc ggacaccgca tttcaagaag
     7261 caaaaaaact gcatcagtcc ctataatccg accaacggca cagatgccgt ctgaagccgc
     7321 cgacataccg ccatgagcct gctgacactg ttacgccccg ccaccgtgca agactgcaaa
     7381 gacatcttca aagtccacct gcactccgtc caatacacct gcatcctcag ctacaacgaa
     7441 cacgccctaa aagtatggga aggcttgcta aacacagaaa gctacctgcc gaccatttcc
     7501 gatcccgaca aagcactttg ggttgccgaa tacaaaggca acatacaggg atttttccaa
     7561 atcgactgcc aagaagcaca actcgatgcg ctttacgtcc accccctgtt ccacaacctc
     7621 ggactgggca ctgccctact tcatcaggcg gaaaccatcg cccacaaatc cggtttgagc
     7681 tttctgaaac tctacgcatc gctcaactcc gtcccgtttt accttctcaa ccgctacgaa
     7741 tcgctcggtt cggcagtatt gcagcttgac cccagcatca aaatcaaatg cgaactgatg
     7801 cggaaacacc tctgatccgt ccttataacc aaaactgata atcttcaaat caaacattat
     7861 ttccacaagc gcagacagcc gtataaagtt gccccatcta ccaaccgaca ggacaagcat
     7921 atgaaaacct acgcaccggc actctatacc gcagccctgc tcaccgcctg cagccccgca
     7981 gccgattcaa atcatccgtc cggacaaaat gccccggcca ataccgaatc cgacggaaaa
     8041 aacattaccc tgctcaacgc ctcatacgat gtggcacggg atttttacaa agaatacaac
     8101 cccttattta tcaaaacata ccaatccgaa caccccggca catccgtcag catccaacag
     8161 tcccacggcg gctccagcaa acaggcatta tccgtagcca acggccttca agccgatgtc
     8221 gtaaccatga accaatcctc cgacatcgac ctgctcgaaa aaaaaggact ggtagaaaaa
     8281 ggctggcaac aagccctccc cgaccacgcc gcgccctaca ccagcactat ggttttcctt
     8341 gtccgaaaaa acaaccccaa acagatccgc gattggaacg accttgccaa agacggcgtt
     8401 aacatcgtca tcgccaatcc caaaacctcg ggcaacggac gctacgcctt cctcggcgca
     8461 tacggttacg gtctgaaagc caccaacggc aacgaacagg aagcccaaaa actcgtcgca
     8521 tccatcctca aaaacacccc cgtttttgaa aacggcggac gcgccgccac caccaccttc
     8581 acacaacgca acatcggcga cgtactcatt acttttgaaa acgaagccaa ctacgtcagc
     8641 aaaaaactga cccaaggaca gtttgaaatc gtctatccga gctacaccat ttccgccgaa
     8701 agccccgtcg ccgtcgtcaa cagcgtcgtc gcgaaaaaag gcacgcaaaa aaccgcccgc
     8761 gcctatctcg aatacctttg gagcgaaccg gcgcaagaac tcgccgcctc actctacctg
     8821 cgcccccgca accccgaagt attggcaaga cacaaagccg acttcccaga cttagactca
     8881 ttctctcccg aagaaaaatt cggcggatgg gacaacatca tgaaaaccta cttcgccgac
     8941 ggcggcatat tcgaccgcct gaccgcacaa aaatgaccgc tatgccgtct gaaccgcctt
     9001 tcagacggca ttccacacat caaaacagaa aaaccgcgcc caaaatcatc atcacaagac
     9061 acaacggcaa accggataca aaacccaaca ccgccgccaa aatgccgtct gaagccgtcg
     9121 gcgcaaccat ccttatctgg ggcgcgcttc aggggcgcat aactttcctt aaccatccct
     9181 tttgacagcc aaataaacag tgcttttgcc tgtcagaaac aaaaccaata ttttgcagtt
     9241 cgtatcggaa catttatagt ggattaacaa aaaccagtac agcgttctcg c
//
LOCUS       DAWGNT010000066         9216 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.066, whole genome shotgun sequence.
ACCESSION   DAWGNT010000066 DAWGNT010000000
VERSION     DAWGNT010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9216)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9216)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9216
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.066"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            90..299
                     /locus_tag="WHR98_001124"
     CDS             90..299
                     /locus_tag="WHR98_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEZ2307812.1"
                     /translation="MPYVNIKVTGGKEAPTAAQKAELIGGVTELLARVLGKNPETTVV
                     VIDEVDTDNWGIGGKSVSERRKEGR"
     gene            388..1602
                     /locus_tag="WHR98_001125"
     CDS             388..1602
                     /locus_tag="WHR98_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEZ2307813.1"
                     /translation="MDKFPKSAKLDHVCYDIRGPVHKKALQLEEEGNKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTSQGYCDSKGLYSARKAIVHYYQTKGLRDITVDDVYIGN
                     GVSELITMSMQALLNDGDEILIPAPDYPLWTAAATLAGGTVRHYLCDEENGWFPNLAD
                     MEAKITPKTKAIVVINPNNPTGAVYSREILLEIAELARKHGLIIFADEIYDKILYDGA
                     VHHHIAALAPDLLTVTFNGLSKSYRVAGFRQGWMVLNGPKHHAKGYIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFILPGGRLLEQRNRAWELVSQIPGVSCVKPMGAMYM
                     FPKIDTEMYRIRDDMKFVYDLLVREKVLLVQGTGFNWIKPDHFRIVTLPYVHQIEEAM
                     GRLARFLQTYRQ"
     gene            complement(1689..4268)
                     /gene="clpB"
                     /locus_tag="WHR98_001126"
     CDS             complement(1689..4268)
                     /gene="clpB"
                     /locus_tag="WHR98_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HEZ2307814.1"
                     /translation="MRYDKLTAKFQQALAEAQSLALAADGSYLEAGFVLKALLDDQNS
                     GAAALLAHAGVNVPQVKQRLQQHLNSLPKVSGQGGDILPSRELQAVLNLMDKAATKRG
                     DAYIASELFLLALVQQNDAAGKILKEAGATEQNINAAIDAVRGGQNVNDANAEDQRDA
                     LKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIVNGEVPESLRNKRLLVLDLAALIAGAKYRGEFEERLKGVLNDLAKDDGNTLIF
                     IDEIHTLVGAGKTDGAMDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQ
                     KVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDRYITDRFLPDKAID
                     LIDEAASRVKMEKETKPEAMDKIDRRLIQLRMEKAHVEKEKDDASKKRLELIDEEING
                     LQKEYADLDEIWKAEKAISDGAANIKKQIDEVKIKIEQAKRQGDLALASKLMYEDLEH
                     LEKQRAAAERADTDSTKPANKLLRNNVGAEEIAEVVSRMTGIPVSKMMEGERDKLLKM
                     EEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAG
                     FLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDE
                     VEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQMGIQDYEAV
                     KEVVMEDVKEHFRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLTV
                     SDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEADGDRL
                     KFA"
     gene            4529..5539
                     /gene="trpS"
                     /locus_tag="WHR98_001127"
     CDS             4529..5539
                     /gene="trpS"
                     /locus_tag="WHR98_001127"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEZ2307815.1"
                     /translation="MSKKRVLTGVTTTGIPHLGNYVGAIRPAVRAAQNPDTESFLFLA
                     DYHGIIKCHEPEMIHQSTQAVAATWLACGLDPERTTFYRQSDIPEVMELNWILTCITA
                     KGLMNRAHAYKAAVQANAENGQEDPDFGVEMGLFSYPILMTADILMFNANEVPVGRDQ
                     IQHVEMARDIAGRFNHRFRELFTLPEVKIDENVELLVGLDGRKMSKSYGNTIPLWEND
                     KKTQKSVNKIITNMKEPGEPKQPDESPLFEIYKAFSTPSETVEFTKMLADGLAWGEAK
                     KLLAAKINAELAEPRERYNELTADPSQIEEILQAGAQKARKEARELLDKVRDAVGIRP
                     LK"
     gene            5545..5886
                     /locus_tag="WHR98_001128"
     CDS             5545..5886
                     /locus_tag="WHR98_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307816.1"
                     /translation="MPSEPLKGLPEQNVVRLTGKHPNDLEAVSGKCMETDDKGGPVGW
                     AENGVCHTLFAKLVGNIAEDGGKLTDYLISHSALQPYQAGKSGYAAVQNGRYVLEIDS
                     EGAFYFRRRHY"
     gene            6205..6549
                     /locus_tag="WHR98_001129"
     CDS             6205..6549
                     /locus_tag="WHR98_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307817.1"
                     /translation="MKKLLIAAMMAAALAACSQEAKQEVKEAVQAVESDVKDTAASAA
                     ESAASAVEEAKDQVKDAAADAKASAEEAVTEAKEAVTEAKEAVTEAAKDTLNKAADAT
                     QEAADKMKDAAK"
     gene            complement(6758..8266)
                     /gene="ppx"
                     /locus_tag="WHR98_001130"
     CDS             complement(6758..8266)
                     /gene="ppx"
                     /locus_tag="WHR98_001130"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HEZ2307818.1"
                     /translation="MTTTPANILASVDLGSNSFRLQICENNNGQLKVIDSFKQMVRFA
                     AGLDEQKNLSAASQEQALDCLAKFGERLRGFRPEQVRAVATNTFRVAKNIADFLPKAE
                     AALGFPIEIIAGREEARLIYTGVIHTLPPGGGKMLVIDIGGGSTEFVIGSTLNPDITE
                     SLPLGCVTYSLRFFQNKITAKDFQSAISAARNEIQRISKNMRREGWDFAVGTSGSAKS
                     IRDVLAAEMPQEADITYKGMRALAERIIEAGSVKKAKFENLKPERIEVFAGGLAVMMA
                     AFEEMKLDRMTVTEAALRDGVFYDLIGRGLNEDMRGQTVAEFQHRYHVSLNQAKRTAE
                     TAQTFMDSLCHAKNVTVQELALWQQYLGRAAALHEIGLDIAHTGYHKHSAYILENADM
                     PGFSRKEQTILAQLVIGHRGDMKKMSGIIGTNEMLWYAVLSLRLAALFCRSRQDLSFP
                     KNMQLRTDTESCGFILRIDREWLERHPLIADALEYESVQWQKINMPFKVEAV"
     gene            complement(8383..9114)
                     /locus_tag="WHR98_001131"
     CDS             complement(8383..9114)
                     /locus_tag="WHR98_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HEZ2307819.1"
                     /translation="MSREINAGGHHFLYGGISGGGVHYWDNKDFSEQCLHLSLGYKNR
                     SVTRSFGIVPFVGQNLLGGSRYNFVGGFNADFSQHLSERWRLTLNAGNMWKHYQEDRT
                     AARYDSHMPLAGATLMYSAPKDWLLYGGADWSHDLTKEAEQASIRKGLRVGAVKTFDG
                     GLGLRANLRYTRRTFDAPGTLVYRFPRKDHEYQANLSLWHDKISWKGFTPQLNFRYLK
                     IDSNMKSFYTRKNMQIFMSVEKDFK"
BASE COUNT         2115 a         2404 c         2441 g         2256 t
ORIGIN      
        1 cgatttgaat ttttcagaaa atgaagcgga cgtttgggcg gaggcaactt gtttgataag
       61 atagcaatat tttaaaacgg agaaagatca tgccttatgt caatattaaa gtaaccggcg
      121 gcaaggaagc accgactgcc gcgcaaaaag cggaactgat cggcggcgta accgaattgc
      181 tggcacgcgt gctgggcaaa aatcccgaaa caacggttgt cgtgattgac gaagtggata
      241 ccgataactg gggaataggc ggcaaaagcg tcagcgaacg gcgcaaagag ggcaggtaaa
      301 aagcctgaaa atctcggttt gatgctttaa attccgcgtg aaaaagagta cattcccacc
      361 cattgcccaa aatttacgga acacatcatg gataaatttc ccaagtctgc aaagctcgat
      421 cacgtctgtt acgacatacg cgggccggtt cacaaaaaag cccttcagtt ggaagaggag
      481 ggcaataaaa tccttaaact caatatcggc aaccctgcgc cgttcggctt tgaagcccct
      541 gatgaaatct tggtcgatgt catccgcaac ctgccgactt cgcaaggcta ttgcgattct
      601 aaagggctgt attccgcccg caaagccatt gttcactact atcagaccaa aggtttgcgc
      661 gatattacgg ttgatgatgt ctatatcggc aacggcgtgt ccgagctgat tacgatgtct
      721 atgcaggcgc tgttgaacga cggcgacgaa atcctgattc ccgcgcccga ctaccctttg
      781 tggacggcgg cggcaacgct tgcgggcggt acggtacgcc attatctgtg cgacgaagaa
      841 aacggctggt tccccaacct tgccgatatg gaagccaaaa tcacgcccaa aaccaaagcc
      901 atcgtcgtca tcaatcccaa taatccgaca ggcgcggtgt acagcaggga aatcctgttg
      961 gaaatcgccg aactggcgcg caagcacggt ttgattattt tcgccgacga gatttacgat
     1021 aaaatccttt atgacggcgc ggttcaccac cacatcgccg cgcttgcccc cgaccttttg
     1081 acggtaacgt tcaacggttt gtccaaatcc taccgcgtcg ccggcttccg ccaaggctgg
     1141 atggtgctca acgggccgaa acatcacgca aaaggttaca tcgagggttt ggatatgctc
     1201 tcgtccatgc gcttgtgtgc caatacgccg atgcagcacg cgattcagac ggcattgggc
     1261 ggctatcaga gcattaacga atttatcctg ccgggcgggc ggcttttgga acagcgcaac
     1321 agggcgtggg aactggtcag ccaaatcccc ggcgtgtcct gcgtcaaacc gatgggcgcg
     1381 atgtatatgt tcccgaaaat cgataccgaa atgtaccgca tccgcgatga catgaaattc
     1441 gtttacgatt tgctggtgcg cgaaaaagtc ttgctggtgc agggaacggg gtttaattgg
     1501 atcaagcccg accatttccg cattgtcacg ctgccttacg tccatcagat tgaagaggcg
     1561 atgggcaggt tggcaagatt cctgcaaacc taccgccaat aaggggacgg tttgtctgcc
     1621 gaggataaaa aatgccgtct gaaacggaga ttcccgtttc agacggcatt ttcaacagca
     1681 ggaacgaatc aggcaaattt cagtctgtcg ccgtcggctt ctaccctgat ttcgctttcg
     1741 ggcgcatagt ttccggcaag cagggctttt gccagcgggt tttcgatttc cgactggatg
     1801 gcgcgtttga gcggacgtgc gccgtaaatc gggtcgaaac cggctttggc gatgatgtcc
     1861 agtgcggcat cggaaacagt caggcgcagg ttttgttttt ccaaacgttt ttccaaacct
     1921 ttgagctgga ttttcgcaat gctgcggatg tttgcctgat ccaaaccgtg gaacacgacc
     1981 acttcgtcga tgcggttgat catttcagga cggaaatgtt ctttcacatc ctccatcaca
     2041 acttctttta ccgcttcgta atcctgaatg cccatttgtt ggatgtgctg gctgccgatg
     2101 ttggaagtca tcacaatcac ggtattttta aaatctaccg tcctgccttg cccgtcggtc
     2161 aaacgaccgt catccaatac ttgcagcagg atgttgaaca catcgggatg ggctttttcc
     2221 acttcgtcca gcagaatcac gctgtacggt ttgcggcgca cttgttcggt caggtagccg
     2281 ccttcttcgt agccgacata gcccggaggc gcaccgatca ggcgtgcaac ggcgtgtttt
     2341 tccatatatt cggacatatc gatgcgaatc agatgatctt cgctgtcgaa cagaaagcct
     2401 gccagggctt tacacaactc ggttttaccc acgccggtcg ggcccaagaa caggaagctg
     2461 ccgtaaggct tgttcggatc ggcaagaccg gagcggctgc ggcggatagc gtcggacacg
     2521 gcacgcacgg cttcgtcctg tccgaccacg cggcggtgca atacttcttc cattttcagc
     2581 agtttgtcgc gttcgccttc catcattttg gatacgggaa tgccggtcat acgggaaacc
     2641 acctctgcga tttcctctgc gccgacatta ttacgcaaga gtttgtttgc cggttttgtg
     2701 ctgtccgtat ctgcccgttc ggcggctgca cgctgttttt ccaaatgctc caaatcttca
     2761 tacatcaatt ttgaagccag tgccaaatcg ccttgccgtt ttgcctgttc gattttaatt
     2821 ttgacttcgt caatttgttt cttaatatta gcagcaccgt ctgaaattgc tttttcggct
     2881 ttccagattt cgtctaaatc ggcgtattct ttttgcagac cgttgatttc ctcgtctatc
     2941 agttccaaac gttttttgct ggcatcgtct ttttcttttt caacgtgcgc cttttccatc
     3001 cgaagctgaa ttagacggcg gtcgattttg tccattgctt ccggcttggt ttctttttcc
     3061 atcttgacac ggctggcggc ttcgtcaatc aaatcaatcg ctttatcagg caggaagcgg
     3121 tcggtaatgt agcggtcgct caactccgct gcggcaacga tagcagggtc ggtaatatcg
     3181 ataccgtggt ggatttcata acgctcctgt aaaccgcgca agatagcgat ggtgtcttct
     3241 acacttggct cgccaaccaa tactttttgg aagcggcgtt cgagtgccgc gtctttttcg
     3301 atgtattggc ggtattcgtc caaggtggtc gcgccgatac agtgcaattc gccacgtgcc
     3361 aaagccggtt tcagcatatt gcccgcatcc atcgcaccgt cggttttgcc tgcgccgacc
     3421 aaagtatgga tttcgtcgat gaaaatcaga gtgttgccgt cgtctttcgc caagtcgttc
     3481 aacacgcctt tcaagcgttc ttcaaattcg ccgcggtatt tcgcgccggc aatcaatgcc
     3541 gccaagtcca aaaccagtag gcgtttgttg cgcagggatt cgggtacttc gccgttgacg
     3601 atgcgttgtg ccaaaccttc gacgatggcg gttttaccca cgcccggttc gccaatcagc
     3661 acagggttgt ttttggtacg gcgttgcaat acctgaatcg cacggcggat ttcgtcgtca
     3721 cggccgataa cggggtcgag cttaccgtct cgggcgcgtt gggtcagatc gagcgtatat
     3781 tttttcaaag catcgcgttg gtcttcggca ttggcatcgt tcacgttttg tcctcctcgt
     3841 accgcgtcaa tcgcggcatt gatgttttgt tcggtcgcgc cggcttcttt caaaattttg
     3901 ccggccgcat cgttctgctg caccaaggca agcaggaaaa gttcactggc gatataggca
     3961 tcgccgcgtt tggttgcggc tttgtccatc aggttcaaca ccgcctgcaa ttcgcggctg
     4021 ggcagaatgt cgccgccctg gccggacact ttcggcaggc tgttcaaatg ctgctgcaaa
     4081 cgctgtttca cctgcggcac gttcacgccc gcatgagcca agagcgcggc agcaccgctg
     4141 ttttggtcgt caagcagggc tttcagcaca aagcccgctt ccagatagct gccgtccgca
     4201 gccaacgcca aactctgagc ttctgcaagg gcctgttgga atttggcggt taatttgtcg
     4261 tatcgcattt ttgtttcctt ttcaaaatgt ccgctgtcga agcctatatg tgcataattg
     4321 tggataactc aagttctgtt ttctgttttt ctatatttaa ttcgatatat cattgaattt
     4381 aaagtatata aaaatgtata ataatgtgta taactatatc ttcttaatat ggaaaagtct
     4441 gttgtcggct ggatgtaggt ggcaaatcgg gtataatcgg cgcatctttt tccctttcag
     4501 acggcattga tgccgcaagg acatttttat gagcaaaaaa cgagttctga ccggcgtaac
     4561 caccaccggc atcccgcatc tgggcaacta cgtcggtgct atccgccccg ccgtccgcgc
     4621 ggcgcaaaac cctgataccg aatccttcct cttcctcgcc gattaccacg gtatcatcaa
     4681 atgccacgag ccggagatga ttcaccaatc cacccaagcc gttgccgcca cttggcttgc
     4741 ctgcggactc gaccccgagc gcaccacctt ctaccgccaa agcgacattc ccgaagtgat
     4801 ggaattgaac tggattctga cctgcatcac cgccaagggt ttgatgaacc gcgcccacgc
     4861 ctacaaagcc gccgtgcagg caaatgcgga aaacgggcag gaagaccccg atttcggcgt
     4921 ggaaatgggt ttgttcagtt atccgattct gatgactgcc gatattctga tgttcaacgc
     4981 caacgaagtc cccgtcgggc gcgaccaaat ccaacacgtc gaaatggcgc gcgacatcgc
     5041 cggccgcttc aatcaccgct tccgagaact cttcaccctg cccgaagtga aaatcgacga
     5101 aaacgtcgaa ctcttggtcg gtttggacgg acgcaaaatg tccaaatcct acggcaacac
     5161 cattccgctt tgggaaaacg acaaaaaaac ccaaaaatcg gtcaacaaaa tcatcaccaa
     5221 tatgaaagag ccgggcgagc cgaaacagcc cgacgaaagc ccattgtttg aaatctacaa
     5281 agccttctcc acgccgtctg aaacggtgga atttacgaaa atgcttgccg acggcctggc
     5341 ttggggcgag gcaaaaaaac ttttggcggc gaaaatcaac gccgaactcg ccgaaccgcg
     5401 cgaacgctac aacgagctga ccgccgaccc ttcgcaaatc gaagagattt tacaggcagg
     5461 tgcgcaaaaa gcgcgtaaag aagcacgcga attgttggac aaagtacgcg atgcggtcgg
     5521 catccgcccg ttgaaataaa cccgatgccg tccgaacctc ttaaaggctt gccggaacaa
     5581 aacgtcgtcc ggctgaccgg caagcatccc aacgacttgg aagccgtcag cggcaaatgc
     5641 atggaaaccg acgataaggg cggtccggta ggctgggcgg aaaacggcgt gtgccatacc
     5701 ttgtttgcca aactggtggg caatatcgcc gaagacggcg gcaaactgac ggattacctg
     5761 atttcgcatt ccgccctgca accctatcag gcaggcaaaa gcggctatgc cgccgtgcag
     5821 aacggacgct atgtgctgga aatcgacagc gaaggggcgt tttatttccg ccgccgccat
     5881 tattgaggta ttcggacatc ccggaatata tttgggtttt tcaaaccttg cgaaaaaagt
     5941 ccgcaccgcc gggaaactca aaaggagggg gatatgtgtt acaattttcc gaactgtttt
     6001 cataaaatag ttttcggacg tgtttcaata tggcattgat gccgccttat tgttcgagaa
     6061 aaaaaccttt atatttaaat ataatgggtt ttaactaaac gggaaaccgt tttctctccg
     6121 gccgatgggc aaaatcagcc gattgatgga acacggtccg atttttaagc aaaaccttaa
     6181 tcaacaactc aagaaggata agacatgaaa aaattattga ttgccgcaat gatggcggct
     6241 gccttggcag cttgttcgca agaagccaaa caggaggtta aggaagcggt tcaagccgtt
     6301 gagtccgatg ttaaagacac tgcggcttct gccgccgagt ctgccgcttc tgccgtcgaa
     6361 gaagcgaaag accaagtcaa agatgctgcg gctgatgcaa aggcaagtgc cgaggaagct
     6421 gtaactgaag ccaaagaagc tgtaactgaa gccaaagaag ctgtaactga agcagctaaa
     6481 gatactttga acaaagctgc cgacgcgact caggaagcgg cagacaaaat gaaagacgct
     6541 gccaaataat ttgttgcttt ggcaaaaatg acgagatgcc gcctgccggc aacccaaacg
     6601 aaaccgcctg aagattttca ggcggttttt gagttgtatg ccccttgttt tttacgcctg
     6661 cataaccgtt ccgagcagat gtgccgcgca tatcgggatg ttgcggacag ggaaatgccg
     6721 tctgaacatc attcagacgg catttgcccc gcaaggttca gacggcctcg actttgaacg
     6781 gcatattgat tttttgccat tggacgcttt catattccaa tgcgtcggca atcaggggat
     6841 ggcgttccag ccattccctg tcaatacgca ggatgaagcc gcaactttcc gtgtccgtac
     6901 gcaactgcat atttttcggg aaagacaggt cttggcgcga acggcagaac agggcggcaa
     6961 ggcgcagcga caaaacggca taccacaaca tttcgttggt gccgatgatg ccgctcattt
     7021 ttttcatatc gccgcgatga ccgatgacca gttgggcaag tatggtctgt tctttgcgtg
     7081 agaaacccgg catatcggcg ttttcgagga tgtaggcgga atgcttgtga tagccggtgt
     7141 gggcgatgtc caaaccgatt tcgtgcagcg cggcggcgcg tccgagatac tgttgccaca
     7201 aggcaagctc ttgaaccgta acatttttag cgtggcagag gctgtccata aaggtttgcg
     7261 cggtctcggc ggtgcgtttc gcctgattga ggctgacgtg gtagcggtgt tggaactcgg
     7321 caaccgtttg tccgcgcata tcttcgttta aaccgcgccc gatcaaatcg taaaacacgc
     7381 cgtcgcgcag ggcggcttcg gttacggtca tcctgtcgag tttcatttct tcaaacgccg
     7441 ccatcatcac ggcaagtccg ccggcaaaaa cttcgatgcg ttccggtttc aggttttcaa
     7501 atttggcctt tttgaccgaa ccggcttcga tgatgcgttc ggcgagggcg cgcatgcctt
     7561 tgtaggtaat gtccgcctct tggggcattt cggcggcaag cacgtcgcgg atggattttg
     7621 ccgaacccga tgtgccgacg gcgaaatccc aaccttcgcg cctcatattt ttgctgatgc
     7681 gctggatttc gttgcgggcg gcggaaatgg cagattggaa gtctttggcg gtgattttgt
     7741 tttggaagaa gcgcaggctg taggtaacgc agcccaaggg caggctttcg gtaatgtcgg
     7801 gattcagcgt cgagccgatg acaaattctg tcgaaccgcc gccgatgtcg ataaccagca
     7861 ttttgccgcc gccggggggg agggtgtgga tcacgccggt ataaatcagc cgcgcctctt
     7921 cgcgcccggc gatgatttct atggggaaac ccagtgccgc ttcggccttg ggaaggaaat
     7981 ctgcgatgtt tttggcgacg cggaaggtgt tggttgccac ggcgcgcacc tgttcggggc
     8041 ggaagccgcg caggcgttcg ccgaattttg ccaggcagtc caaagcctgt tcttgggaag
     8101 cggcactcag gtttttctgt tcgtccagac cggcggcgaa gcgcaccatc tgtttgaacg
     8161 aatcgataac tttcaactgt ccgttgttgt tttcgcaaat ctggaggcgg aaactgttgg
     8221 aacccaaatc gacggaggcg aggatgtttg cgggggtggt ggtcatggcg gatatcggtg
     8281 ggggaaaaac gcaatgttac tctgacggcg caggcgttga caataaatga tgcggctgtt
     8341 tttgattctg ctcgcggatg ttgccgacgg cattttttgc gcttatttga aatccttttc
     8401 cacgctcatg aaaatctgca tgtttttgcg tgtgtaaaaa cttttcatat tgctgtcgat
     8461 tttcagatag cggaaattga gttgcggcgt aaagcccttc caagagattt tgtcgtgcca
     8521 caacgacagg tttgcctgat attcgtggtc tttgcgcggg aagcggtaca caagggtccc
     8581 gggtgcatca aaagtcctgc gggtgtagcg caggtttgcc cgcagaccca agccgccgtc
     8641 gaacgttttg accgctccga cacgcaaacc cttgcggatg gaagcctgtt ccgcctcctt
     8701 cgtcaagtcg tgcgaccagt ccgcaccgcc gtaaagcagc cagtctttcg gcgcggaata
     8761 catcagcgtc gcgcccgcca gcggcatatg gctgtcgtat cgggcggcgg tgcggtcttc
     8821 ctgataatgc ttccacatat tgcccgcgtt tagtgtcaac cgccagcgtt cgctcaagtg
     8881 ttgggagaaa tcggcattaa agccgccgac gaaattgtat cggctgccgc ctaagaggtt
     8941 ttgcccgaca aacggcacga tgccgaacga gcgcgttacc gaacgatttt tatagccgag
     9001 cgacaggtgc aggcactgtt cgctgaaatc tttgttatcc caataatgca cgccgccgcc
     9061 gctgatgccg ccgtagagga aatgatgccc gcccgcattg atttcgcgcg acacgcctaa
     9121 gccctagcgc aaaccgtgtg ccttttgcgg caggctgtcg gcggttttcg tccagcttct
     9181 gcccgcaaat tcaatcgttt ttttggacga agcgtt
//
LOCUS       DAWGNT010000067         9191 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.067, whole genome shotgun sequence.
ACCESSION   DAWGNT010000067 DAWGNT010000000
VERSION     DAWGNT010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9191
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.067"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(81..275)
                     /locus_tag="WHR98_001132"
     CDS             complement(81..275)
                     /locus_tag="WHR98_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HEZ2307820.1"
                     /translation="MKHKLASWWKTIKLTANLMAGVPDYENYVAQQRKHNPNAPVMTK
                     LQFQDYCRKRRCGANGGRCC"
     gene            complement(265..2346)
                     /locus_tag="WHR98_001133"
     CDS             complement(265..2346)
                     /locus_tag="WHR98_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEZ2307821.1"
                     /translation="MKSLKTFLIWGIVVLVGLASFTTLALSRGEQVSAVWMVTAAISV
                     YCIAYRFYSLYIANRVMRLDPNRLTPAERHNDGLDYVPTHKGVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGTLWIIFGVVFAGAVQDMMVLFVSMRRDGKSLGDIVKQELGTVPG
                     VIASIGILMIMVIIMAVLALIVVKALVHSPWGTFTIAATMPIALFMGIYTRYIRPGKI
                     GEISIVGFILLMLAVIYGEDVAKSSIGHWFDLDGIQLTWAIMIYGFVASVLPVWLLLT
                     PRDYLSTFLKIGTIAALALGIVIVNPTLQMPAVTHFIDGSGPVFSGALFPFLFITIAC
                     GAVSGFHALISSGTTPKMLENETHVRMIGYGGMLMESFVAIMALAAAASLDPGVYFAM
                     NSPAALIGTDANTAAEVITTKLQFPVDAATLLHTAKEVGENTILSRAGGAPTLAVGMA
                     HIMSRLIPGEAMMAFWYHFALLFEALFILTAVDAGTRVARFMIQDLGSIFYKPFGNTD
                     SIPANLIATFFAVALWGYFLYTGVTDPLGGINSLWPLFGIANQMLAGVALIMCAVVLI
                     KMKRDRYVWVVLVPAVGVLFVTCYAGLQKLFHSDPRISFLAHAGKYSDALAKNEILAP
                     AKDIGEMAQIIFNDKINAGLTILFLSVVVIVAAYGLRTALKARKVGWPTAKEIPAVYR
                     DGKQPEAQSEA"
     gene            2823..3203
                     /locus_tag="WHR98_001134"
     CDS             2823..3203
                     /locus_tag="WHR98_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HEZ2307822.1"
                     /translation="MNIRFFALTVPVLSLAACAVPEADDGGGRGHMPPVQNQAGTADF
                     RAFSCENGLSVRVRHLDSGKVALRLDGRRAVLSSDVAASGERYTAEHGLFGNATEWHQ
                     KGGEAFFGFTDAYGNSVETSCRAR"
     gene            complement(3336..3830)
                     /locus_tag="WHR98_001135"
     CDS             complement(3336..3830)
                     /locus_tag="WHR98_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdiI family contact-dependent growth inhibition
                     immunity protein"
                     /protein_id="HEZ2307823.1"
                     /translation="MIFKQNQNYWAVFYTNEEALIVQTCSGLGLTAIDHLYPPHILPL
                     DTDNETLGTTVLQALANSRTFVYDSPEDQDFFDTEKIRQRYEDWVAKLCGNLGYKTRR
                     ALFKNMMSVDIWLHNGCLKISPSRHVKLEAWDAIDADDVILSLDNSPEEIGAGLKLAL
                     SRCR"
     gene            3967..4131
                     /locus_tag="WHR98_001136"
     CDS             3967..4131
                     /locus_tag="WHR98_001136"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307824.1"
                     /translation="MYKKVFFLNDRDCARAIFRHRPDVALPDRMLQTASEGFAVLEYE
                     DDNVREIDGI"
     gene            4164..5597
                     /locus_tag="WHR98_001137"
     CDS             4164..5597
                     /locus_tag="WHR98_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEZ2307825.1"
                     /translation="MNEYYQLIKHPDISLSPISDGIEVDNPATGEILAYVRKTDSDKL
                     KNLIQKAAAAQKLWAAKTALERADVLWRWYFQIKENKEALARLMTMEQGKSLTEARGE
                     IDYAASFVRWFAEEARRIDGDVLTSVKASQKLVVLKQPVGVTAAITPWNFPSAMIARK
                     AAPALAVGCAMIVKPASLTPLSAYALVVLAYEAGVPQDLLPVVSGRASEIGREFATNP
                     IIRKISFTGSTEVGAKIFADSAADIKKLSLELGGNAPFIVFDDADLDKAVEGALASKF
                     RNSGQTCVCTNRVYAQSGIYDAFCRKLSEKAAALKLGNGLEDGVNQGPLIEEKAVEKV
                     EQHIADALAKGAVCLTGGKRSALGGTFFEPTVLSGVTAQMAVAREETFGPLCPVFRFE
                     TEAEVIEAANNTEYGLAAYLFTADTARQWRVGEALEYGMVGINTGLISNEAAPFGGVK
                     RSGLGREGSKYGADEYLELKYLCMDVG"
     gene            5707..6495
                     /locus_tag="WHR98_001138"
     CDS             5707..6495
                     /locus_tag="WHR98_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimb protein"
                     /protein_id="HEZ2307826.1"
                     /translation="MMENGKTVPRWRFALKSAGWHLLISLSVAGLAALLVFKVWYPYP
                     YAELTGGLSLYQLVVAVDIVCGPLLTLILASPKKKTKARMVDFSMVGIIQLAALVYGL
                     HSVSLARPVIEAFEKDRINIVTAAEVAVEDLHKAPEGLQSLSWFGIRRIALKEPEDAD
                     EKNKTLDLSLKGIEPSMRPDRWLPYSDKEAEKIRKHLKPLKVLADARKTTVADILKQA
                     GLAEGEELYYLPFTSSRQKEWIVITDKEGNTKGYAPIDGFIITP"
     gene            6863..8419
                     /locus_tag="WHR98_001139"
     CDS             6863..8419
                     /locus_tag="WHR98_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEZ2307827.1"
                     /translation="MDFSWLAEPHTWIGFATLLVLEVVLGIDNLVFVAILANKVQPAR
                     RDRARIIGLGLAVVIRIIMLAFMAHIITLTEPLFQIGGLAVSGKDMIMLAGGIFLLYK
                     ATTELHERLEGHNRFTVADSQKKHAPFWGVVAQILILDAVFSIDSVITAVAMVDHIVV
                     AMGAVVVAMAVMISASKLLTEFVDRHPTVVMLCLGFLLMIGFSLIAEAFHFHIPKGYL
                     YAAIGFSILIELFNQISQRNSRKNDYIGSSWRKRTAENVLGMMGIRESVLADAGGESG
                     DDAHFEENEKSMIRSVLTLAERPIMGVMIPRRDIERLDISQSREEQCAQLQNTPYSRL
                     LVVGKAGVDEPLGYINKKDLLSQLLETGGLDIQTALRQPLVLPDSTTALGAIELFRQS
                     SADYALVVDEFGAVLGMVTMKDLLETIAGEFPEEFEREEEPAVQGNPDESLTVEGALE
                     YVELASQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWRFEVVEKEGQRIE
                     RVKITKLPEE"
     gene            8436..9182
                     /gene="surE"
                     /locus_tag="WHR98_001140"
     CDS             8436..9182
                     /gene="surE"
                     /locus_tag="WHR98_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEZ2307828.1"
                     /translation="MNVLISNDDGYLSEGIAVLARVTAEFANVRVVAPERDRSGVSNS
                     LTLERPLQLKQAQNGFYYVNGTPTDCIHIGQSVFSDFQADFVFSGINRGANMGDDTLY
                     SGTVAAATEAYLMGIPAVAFSLNDASGRYWATAEQALWTLLAHFFKNPPQSPILWNIN
                     IPAVEPEDVRGIKIARLGRRHHGQNVIPARNPRGEQIYWIGPVGEVSDREEGTDFGEC
                     GAGFITVTPLQIDLTAYPDMAETAAFWHAD"
BASE COUNT         2152 a         2318 c         2613 g         2108 t
ORIGIN      
        1 tgtcctgatt tttgttaatc cactatatta taaaaattcc gtctgaagcg gcgttcagac
       61 ggaatttgtt tcaagcaggc ttaacagcag cgtccgccgt ttgcgccgca gcggcgtttg
      121 cggcaatagt cttgaaactg cagcttggtc atcacagggg cgttgggatt atgtttgcgc
      181 tgctgtgcaa cgtagttttc ataatcgggc acgcctgcca tcaagtttgc cgtcagcttg
      241 atggttttcc accaagacgc gagcttatgc ttcactttgt gcctccggct gtttgccgtc
      301 gcggtacacc gccgggattt ctttggcggt cggccagccg actttgcgtg ctttgagggc
      361 ggtacgcaaa ccgtacgcgg cgacaatcac gacaaccgac aagaagagga tggtcagacc
      421 ggcattaatc ttgtcgttga agatgatttg cgccatttcg ccgatgtctt tggcaggcgc
      481 aaggatttcg tttttagcca atgcgtcgct gtatttgccg gcgtgggcaa ggaagctgat
      541 gcgcgggtcg ctgtggaaca gtttttgcag gccggcgtag caggttacga acagtacgcc
      601 gacggcggga acgagtacca cccagacata acggtcgcgt ttcatcttaa tcagcaccac
      661 ggcgcacata atcaaggcta cgcctgccag catttggttg gcgatgccga acaaaggcca
      721 gagcgagttg atgccgccca acgggtcggt tacgccggtg tagagaaagt agccccacaa
      781 tgccacggcg aagaaggtcg caatcaggtt ggcggggatg gagtcggtgt tgccgaaagg
      841 tttgtagaag atgctgccca agtcttgaat cataaaacgt gcgacgcgcg taccggcatc
      901 gacggcggtc aggatgaaca aggcttcaaa caacagggcg aagtgatacc agaacgccat
      961 catcgcctcg cccggaatca ggcggctcat aatgtgcgcc ataccgactg cgagggtggg
     1021 cgcaccgcct gcacgggaaa ggatggtgtt ttcgcccact tccttagcgg tgtgcaacag
     1081 ggttgccgca tcgacaggga attgcagctt ggtggtaatc acttcggcgg cggtattggc
     1141 atccgtaccg atcagggcgg cagggctgtt catggcgaag tacacgccgg gatcaagcga
     1201 tgcggcggcg gcaagcgcca taatggctac gaaactttcc atcaacatac cgccgtaacc
     1261 aatcatacgg acgtgggttt cgttttccag cattttcggc gtggtgccgg aggaaatcag
     1321 cgcgtggaag cccgaaaccg caccgcaggc gatggtgatg aagaggaacg ggaacaatgc
     1381 gcctgagaat accgggccgg aaccgtcgat aaagtgggtt acggcaggca tttgcaaagt
     1441 gggattgacg atgacgatgc ccaaagccaa ggccgcaatc gtaccgattt tcaggaaggt
     1501 ggagagatag tcgcgcggag tgagcagcag ccatacgggc aatacggagg cgacaaagcc
     1561 gtaaatcata atcgcccaag tgagctggat gccgtcaagg tcgaaccaat gtccgatgga
     1621 acttttcgcc acatcttcgc cgtaaattac cgccagcatc agcaaaataa agccgacgat
     1681 ggaaatctcg ccgattttgc ccggacggat atagcgcgtg taaataccca taaacagggc
     1741 aatcggcatc gttgcggcga tggtaaacgt accccaaggg ctgtgaacca gtgcttttac
     1801 gacaatcaac gccaacaccg ccataatgat gaccataatc atcaaaatac cgatggaggc
     1861 aatcacgccg gggacagtgc cgagttcctg tttcacaata tcgcccaaag acttaccgtc
     1921 gcggcgcata gagacgaaca agaccatcat atcctgtacc gcgccggcaa acaccacgcc
     1981 gaagataatc cacaaagtac cgggcaggta acccatttgc gccgccaaaa ccgggccgac
     2041 caaagggccc gcgcccgcaa tcgcggcaaa gtggtgtccg aacaatacgc ctttgtgcgt
     2101 cggaacgtag tccaagccgt cgttgtggcg ttctgccgga gtcaggcggt taggatcgag
     2161 ccgcattacg cggttggcga tgtagaggct gtaaaaacgg taggcgatgc agtaaacgga
     2221 tatggcggcg gtaaccatcc ataccgcgct gacctgttcg cctcggctga gagccagagt
     2281 ggtaaaggat gctaagccga ccagtaccac tatgccccaa atgaggaagg ttttgagtga
     2341 tttcatcgaa taaatcctta tctcacactg tcggaatatg cctgaacggc gggaaacggc
     2401 cgaaccatct gccggcacgg gcacaaaccg gagtctgaat gattgacgaa gtatgaaaca
     2461 gtgcgcttgt cgggatttgt gccttatgcc cgcatcaaac agtgcaggga tgcgggcgca
     2521 caaaacgtta aacgccgaat atgattttaa cgcaaattag cacactgata gcggttttta
     2581 cttggaattt ggaaaaaatt tacattcctt cgggcgggca ggcaggttca gacggcatcg
     2641 tcaggcaaaa ggcggcgccg gaagacgggt aaagaagggg cgcgcaatcc ggattgtcgg
     2701 ttaatcgcgg gtaaattctg gttatcgggc ttgtgtgttt gcgcgtccgt ttatagtatg
     2761 gcgttgccgc agcttggaat cagggcggtt gtttcatatc ttatttttat tggggagctt
     2821 ttatgaatat cagatttttc gcgctgaccg taccggtttt gtctttggcg gcctgtgccg
     2881 tgccggaagc ggatgatggc ggcggacgcg ggcatatgcc gcccgttcaa aaccaagccg
     2941 gcacggcaga ttttcgggcg ttttcatgcg agaacgggtt gtctgtgcgc gtccgccatt
     3001 tggacagcgg caaagtcgcg ttgcggctgg acggcaggcg tgccgtcctc tcttccgacg
     3061 ttgccgcatc cggagagcgc tataccgccg aacacggttt gttcggaaac gcaaccgagt
     3121 ggcaccagaa aggcggcgaa gcctttttcg gctttaccga tgcctacggc aattcggtcg
     3181 aaacttcctg ccgcgcccgt taaacggggc agcctgtttg aaccgccgtc cggatttttc
     3241 gggcggtttt ttgtaccggt tttgttttgg ccgtcggctg gttccggcgg ttttcgggcg
     3301 tggcggatta tttttcgttt tgttccgggt ttattctatc ggcagcggct caatgccaac
     3361 tttaaacctg ctccgatttc ttcagggctg ttatccaatg ataaaattac atcgtctgca
     3421 tcaatggcat cccacgcttc cagcttgaca tggcggctcg ggctgatttt caggcagccg
     3481 ttgtgcagcc aaatatccac gctcatcatg tttttaaata gggcgcgtct ggttttatag
     3541 cccaagttcc cgcatagctt ggcaacccaa tcctcatagc gttgccgaat tttttcggta
     3601 tcaaaaaaat cttggtcttc tggactgtca taaacgaaag tcctgctgtt tgccaatgct
     3661 tgcaagaccg ttgtgcctaa agtttcattg tcggtatcca atggcaggat atgaggggga
     3721 tataggtggt ctattgccgt taatcccaaa cctgaacatg tttgaacaat cagagcttct
     3781 tcattcgtat aaaaaactgc ccaataattt tgattctgtt taaaaatcat tattttatct
     3841 ccgtaatttt gactgtaatg ttttgacttt tgccatactc taccacacgt tgcaactgca
     3901 atctttgctc cttatatatt gcaccccatc aaagggctgc attacttttc tttctaaaga
     3961 ttaccattgt ataaaaaagt atttttctta aacgacaggg attgcgcccg cgccatattc
     4021 agacaccgcc cagatgttgc gctgcccgat cggatgcttc agacggcatc ggaagggttt
     4081 gcagttttgg aatatgaaga tgataatgtc cgcgagattg acggcatttg aaagcggtta
     4141 ttccgcatac cggaggacac gaaatgaacg aatattacca attaatcaag catcccgata
     4201 tttccctttc cccgatttca gacggcatcg aggtcgacaa tccggcaacg ggcgaaattt
     4261 tggcgtatgt ccgcaagacg gattcggaca agctgaaaaa cctgattcaa aaagcagctg
     4321 cagcacaaaa attatgggcg gcaaaaactg cgttggaacg cgccgatgtg ttgtggcgtt
     4381 ggtattttca gattaaagaa aacaaagaag cattagcgcg cctgatgacg atggagcagg
     4441 gcaaaagcct gaccgaggcg cgtggcgaaa tcgattatgc ggcttcgttt gtgcgctggt
     4501 ttgccgaaga ggcgcggcgg attgacggcg atgtgttaac gagtgtgaaa gcgtcgcaaa
     4561 aactggttgt gttgaaacag cctgtcggtg ttaccgccgc gattacgccg tggaacttcc
     4621 cgtctgcgat gattgcgcgc aaggccgcgc ctgctttggc ggtgggctgc gcgatgatcg
     4681 tcaaacccgc atcgctcacg cctttgagtg cgtatgcgtt ggtcgtgctg gcttatgaag
     4741 cgggcgtacc acaggatttg ttgcccgtcg tcagcggccg cgcatcggaa atcggccgtg
     4801 aatttgccac gaacccgatt atccgcaaaa tcagcttcac cggctctacc gaagtcggtg
     4861 cgaaaatttt tgccgacagc gcggcggaca ttaaaaaact cagtttggaa ctgggcggca
     4921 acgcgccgtt tatcgtgttt gacgatgccg atttggacaa agccgtcgaa ggtgcgctcg
     4981 ccagcaagtt ccgcaacagc ggtcagacct gcgtctgcac caaccgcgtt tacgcccaat
     5041 cgggcattta cgacgcattt tgccgcaaat taagtgaaaa agcagccgcg ctcaaattgg
     5101 gcaacggctt ggaggatggc gtaaaccaag ggccgctgat tgaggaaaaa gcggtggaga
     5161 aagtcgagca gcacatcgcc gacgcgctcg ctaaaggcgc ggtctgtctg accggcggca
     5221 aacgcagcgc attgggcgga acgttttttg agccgaccgt cttaagcggc gtaacggcgc
     5281 aaatggcggt ggctcgcgaa gaaaccttcg ggcctttgtg tccggtattc cgttttgaaa
     5341 ccgaagccga agtcattgag gctgcgaaca atacggaata cggtttggct gcttaccttt
     5401 ttaccgccga caccgcacgc cagtggcgcg tcggcgaagc cttggaatac ggtatggtcg
     5461 gcatcaatac gggcttaatc agcaatgaag cggcaccgtt cggcggcgtg aaacgtagcg
     5521 gtttgggacg tgaaggcagc aaatacggtg cggacgaata tctggaattg aaatatctgt
     5581 gtatggatgt cgggtgacgg atgccgtctg aacggcaggg tttcagacgg tgccgcattt
     5641 taagcagtct ctatctgttg tacaatgcgc cctgttttta cggttatttt tgatgtgaat
     5701 taagatatga tggaaaacgg aaaaacagtc ccgagatggc gttttgcctt gaaaagtgcg
     5761 ggttggcatc tcttaatcag cctgtcggtt gcagggctgg cggcattgct ggtttttaag
     5821 gtttggtatc cttatcctta tgccgagctg acgggagggc tgtcgcttta tcagctggtg
     5881 gtggctgtcg atattgtatg tggtccgctg ctgactttaa ttttggcaag cccgaagaaa
     5941 aagacaaagg cacgcatggt cgatttttcc atggtcggca tcatccagct ggcggctttg
     6001 gtgtacggtc tgcacagcgt ttcgctggcg cgccctgtga tagaggcgtt tgaaaaagac
     6061 aggattaata ttgtaaccgc cgccgaagtg gcggttgaag acctgcacaa agcgccggaa
     6121 gggctgcaaa gcctgtcgtg gttcggcatc cgccgcattg cattgaaaga acctgaggat
     6181 gcggatgaga agaacaagac gctggatttg tccctgaaag gtatcgagcc gagtatgcgt
     6241 cccgaccggt ggctgccgta ttccgacaag gaagcagaaa aaatccgcaa acatctgaaa
     6301 ccgctgaaag tcttggcgga tgcgagaaaa acgacggttg cggacattct gaaacaggca
     6361 ggtctcgccg aaggggagga gctgtattac ctgccgttta ccagcagcag gcagaaagag
     6421 tggatagtca ttaccgataa agagggcaac accaaaggct acgcgccgat agacggcttc
     6481 atcatcaccc cttaagcgtt gggactccgt ccgcactcga acatccgttc ttcgcggcgg
     6541 tagaatcaga ctgtatttga gaggggcgca acccctcaat cagggcaaca cataggggaa
     6601 ggctttatgt gccgtccgtg tgttgaaaca tttcaaaata agctcatgcc gtccgaacat
     6661 cctttcagac ggtatggcat tttgccattg ccccgataag ctgttaaact atttaaatta
     6721 tttcgaccga aggtacacgc acatgcaaga ccccgagcag agcagcaagc ccgcccgccg
     6781 ttttttgtgc gtaccgtctg ttcaggcagc ttgagcgctt caggctgcct tttcgcgttt
     6841 gaacttgagg aatacgaaaa tcatggattt cagttggttg gcagaaccgc atacctggat
     6901 aggttttgcc acgcttttgg tgttggaagt cgtattgggg atagacaatc ttgtctttgt
     6961 ggcgattttg gcaaacaagg tccagcccgc acggcgcgac cgcgcacgga ttatcgggct
     7021 ggggctggca gtcgtcatcc gcatcattat gcttgctttt atggcgcaca tcatcacgct
     7081 gaccgagccg ctgttccaaa tcggcggcct cgccgtttcc ggcaaggaca tgattatgct
     7141 cgcgggcggt attttcctgc tttacaaagc caccaccgaa ctgcacgaac gcctcgaagg
     7201 gcacaaccgg tttaccgttg ccgacagcca gaaaaaacac gcgccgtttt ggggcgtggt
     7261 cgcgcaaatc ctgatactgg atgctgtgtt ttccatcgat tcggtcatca ccgccgtagc
     7321 gatggtcgat catatcgtcg tggcgatggg tgcggtcgtc gtcgcgatgg ctgtaatgat
     7381 ttctgccagc aaactcttga ccgaatttgt cgacagacac cctaccgtcg tgatgctctg
     7441 ccttggtttt ttgttgatga tcggtttcag cctgattgcc gaagccttcc atttccacat
     7501 tcccaaaggc tacctctacg ccgccatcgg cttctcgatt ttaatcgaac tgtttaacca
     7561 gatttcccag cgcaacagcc gcaaaaacga ctacatcggc agctcgtggc gcaagcgcac
     7621 cgccgaaaac gttttgggta tgatgggcat acgcgaaagc gtgcttgccg atgcgggcgg
     7681 cgaatccggg gacgacgcgc attttgaaga aaacgaaaaa tcgatgatac gcagcgtgct
     7741 gacgcttgcc gaacgcccga ttatgggggt gatgatccca cgccgcgaca tcgaacggct
     7801 ggacatttcc caaagccgcg aagaacagtg tgcccaactg caaaacacgc cttacagccg
     7861 cctgctcgtt gtcggtaagg cgggcgtgga cgaacctttg ggctacatca acaaaaaaga
     7921 cctgctgtcc caactgctgg aaacaggcgg tctcgacatt cagacggcat tgcgccagcc
     7981 actcgtcctg cccgacagca ccaccgcgct gggcgcaatc gaactcttcc gccaaagcag
     8041 cgcggattat gctttggtgg tggacgagtt cggcgcggta ttgggcatgg taaccatgaa
     8101 agacctgctc gaaaccatcg caggcgagtt ccccgaagaa tttgagcgcg aagaagaacc
     8161 agccgttcag gggaatcccg atgaaagcct gacggtggaa ggcgcgttgg aatatgtgga
     8221 gctggcatcc caactcaatc tgccgcagca ggaggaagat gccgatttcc atacggttgc
     8281 cgggctgatt atggaagaat tgcaaaccat ccccgatgtc ggcgattttg ccgatttcca
     8341 cggctggcgg tttgaagtgg tcgaaaaaga agggcagcgc atcgagcggg tcaaaatcac
     8401 caaattgccc gaagaataag cattcaggat agaaaatgaa cgttttgatt tccaacgacg
     8461 acggctacct ctccgaaggt attgccgttt tggcgcgcgt tacggcggaa tttgccaacg
     8521 tcagggtggt tgcgcccgaa cgcgacagga gcggggtcag caattcgctg acgctggaac
     8581 gccctttgca gttgaaacag gcgcaaaacg ggttctacta tgtcaacggc acgccgaccg
     8641 actgcatcca catcgggcag tctgtatttt cggattttca ggccgatttt gtcttttcgg
     8701 gcatcaaccg gggcgcgaat atgggggacg acacgcttta ttcggggacg gttgcggcgg
     8761 caaccgaagc ctaccttatg ggcatacccg ctgtggcgtt ttccttaaac gacgcttccg
     8821 gacgctattg ggcgaccgca gaacaggcac tgtggacatt gttggcgcat tttttcaaaa
     8881 accccccgca gtcccctatt ttgtggaaca tcaatatccc cgccgtcgag ccggaagatg
     8941 tgcggggcat taaaatcgcc cgtttgggca ggaggcatca cggtcagaac gtcatccccg
     9001 cgcgcaatcc gcgcggcgaa cagatttatt ggataggacc ggtcggcgaa gtttccgatc
     9061 gggaagaggg aacggatttc ggtgaatgcg gcgcaggttt cattaccgta acgccgctgc
     9121 aaatcgacct gaccgcctat ccggacatgg cggaaacagc ggcgttctgg catgcggact
     9181 gaccgtttca t
//
LOCUS       DAWGNT010000068         9110 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.068, whole genome shotgun sequence.
ACCESSION   DAWGNT010000068 DAWGNT010000000
VERSION     DAWGNT010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9110
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.068"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            1..75
                     /locus_tag="WHR98_001141"
     tRNA            1..75
                     /locus_tag="WHR98_001141"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:34..36,aa:Glu,seq:ttc)
     gene            633..1808
                     /locus_tag="WHR98_001142"
     CDS             633..1808
                     /locus_tag="WHR98_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEZ2307829.1"
                     /translation="MQNIFDPLVIRGKSLTPIVQGGMGVGVSASGLSSAVARENGIGT
                     IASVDLRHLHEDLLAESQINPSEEKYTSLNCTALDREIQKAKSASEGKGLIAVNVMKA
                     VKDHAAYVRQACESGADAVVMGAGLPLDLPEMTEGYHKYVALLPILSESRGINIVLKR
                     WMKKGILPDAIVVEHPAHAAGHLGASTVEGVNDAKFDFKRVIEETFEVFKSLGLESEK
                     IPLILAGGMANFEKVKTALKNWGASAVQIGTAFAVTEEGDAHLNFKKTLAGAETEKVV
                     EFMSVAGLPARGVRTKFLDSYIKRESKLQTNAKADPRRCTQGLNCLTSCGLRDGLSKA
                     GQFCIDIQLAAAFRGEVDKGLFFRGKDPLPFGNAIRTVRETIQYLLTGSEPVATVGR"
     gene            complement(1868..2416)
                     /locus_tag="WHR98_001143"
     CDS             complement(1868..2416)
                     /locus_tag="WHR98_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HEZ2307830.1"
                     /translation="MSQNTPIKPWYKHVWPWILMAGPIFVVIASVAMFFVAQQHATDL
                     VTDDYYKDGKHIDIQLHRDEEAVRRHIGVQVLISPDMNAAKVFVGGEFDGKQPLNLLL
                     MHPTRKADDQTVALKPVGSAQNGRAEYEAVFKTLSPTNHWYVRVEDAAGVWRVENKWI
                     TSQGNAVDLTPMDKLFNNTESK"
     gene            complement(2419..3915)
                     /gene="ccoG"
                     /locus_tag="WHR98_001144"
     CDS             complement(2419..3915)
                     /gene="ccoG"
                     /locus_tag="WHR98_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003708970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEZ2307831.1"
                     /translation="MTTENQAGSPASGIGTSEQTKAAPKAKKTFDPRASVIQIHPEGE
                     RIHPKKAEGRFAKLRIAAVLATQFVFYVIPWFNWSGRQAVVFNIPERHFFIFGLSLGV
                     GDLIYLALLLMICAFGLFWWTTIAGRLWCGYSCPQTVYTEIMLWIDNLVEGDRNKRLK
                     LEKSPWNFTKIRIKATKYLLIFLVCAWTGITFAGWFVPIRQFVPDLFTGAAGGGAMFA
                     AAFYGFMTFFFAHIMREKVCLHMCPYARFQSAMFDKDTLIVSYDAERGEPRGARKKTV
                     NKEEAGLGDCINCAMCVQVCPVGIDIRNGLQYQCIGCAACIDACDEIMDKMGYPRGLI
                     RYTTESALEHEYSEKDIKKRLLRPRVAGYGAVLALVIIAFLAGLSTRKMVEVDILKDR
                     GVLVRENAKGWLENAYSLRIINKSEKEQLITASVKGFDEIALTGLPEGGIKVAPRETV
                     TLPVQVSTIPEYADKGSHPIEFTFQYRESGAPDGKPVVLEEDATFIGE"
     gene            4443..6422
                     /gene="tkt"
                     /locus_tag="WHR98_001145"
     CDS             4443..6422
                     /gene="tkt"
                     /locus_tag="WHR98_001145"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEZ2307832.1"
                     /translation="MSQLANAIRFLSADAVQKANSGHPGAPMGMAEMAETLWTKFLNH
                     NPANPKFYNRDRFVLSNGHASMLLYSLLHLTGYNLSIEDLKNFRQLHSKTPGHPEYGY
                     TDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMGDGCLMEGVS
                     HEACSLAGTLGLGKLIVLYDDNNISIDGKVDGWFTENIPQRFESYGWHVVPNVNGHDT
                     AAIQAAIEAARAETGKPSIICCKTLIGKGSANKEGSHKTHGAPLGADEIEATRKHLGW
                     TYPAFEIPQEIYDAWNAKEQGAKLEADWNELFAQYQAKYPAEAAEFVRRMDKKLPDNF
                     DEYVQTALKEVCAKAETIATRKASQNSIEILAKELPELVGGSADLTPSNLTDWSNSVS
                     VTRDKGGNYIHYGVREFGMGAIMNGLVLHGGVKPFGATFLMFSEYERNALRMAALMKI
                     NPVFVFTHDSIGLGEDGPTHQPIEQTATLRLIPNMDVWRPCDTAESLVAWAEAVKAAD
                     HPSCLIFSRQNLKFQARSEQQLDDIKRGGYIISEAQGNAQAVIIATGSEVELALEAQK
                     ALAAQNIAVRVVSMPSTNVFDRQDAAYQAAVLPESLPRIAVEAGHADGWYKYVGLNGA
                     VVGINRFGESAPADLLFKAFGFTVDNVVDTVKSVL"
     gene            6566..7954
                     /gene="fumC"
                     /locus_tag="WHR98_001146"
     CDS             6566..7954
                     /gene="fumC"
                     /locus_tag="WHR98_001146"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEZ2307833.1"
                     /translation="MSTRTEHDTMGNVEVPSEAYWGAQTQRSRNNFKIGGETLPQPLI
                     YALALVKKAAAATNVSLGRIKPEQADLITQAADDVLNGKLDGQFPLVVWQTGSGTQSN
                     MNMNEVLANRANEIAGTGLAAYQPVHPNDHVNHAQSTNDAFPTAIHVAAAIEINRHLI
                     PAVKALRDTLDKKAQAFAPIVKIGRTHLQDATPLTLGQEFSGYVSQLDHGLGRLNDAL
                     KDLYELALGGTAVGTGLNSHPEYAEKAAAKLAELSGLPFVSAPNKFEALGGRDAAVAA
                     SGALKTLAASLNKIANDIRWLASGPRCGLGEIKIPENEPGSSIMPGKVNPTQCEAMTM
                     VCCQVFGNDVTIGMAGASGNFELNVYMPVIAYNLLQSIRLLGDACNSFNEHCAIGIEP
                     VPEKIDYFLHHSLMLVTALNRKIGYENAAKVAKTAYKNNKSLRETAVELGLLTGEEFD
                     ELVVPADMVHPR"
     gene            complement(8019..8942)
                     /locus_tag="WHR98_001147"
     CDS             complement(8019..8942)
                     /locus_tag="WHR98_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEZ2307834.1"
                     /translation="MENQRPHLGFALALLAAMTWGTLPIAVRQVLKFVDAPTLVWVRF
                     TVAAAVLFVLLALGGRLPKRRDFSWCSFRLLLLGVAGISANFVLIAQGLHYISPTTTQ
                     VLWQISPFTMIVVGVLVFKDRMTAAQKIGLVLLLAGLLMFFNDKFGELSGLGAYAKGV
                     LLCAAGSMAWVCYAVAQKLLSAQFGPQQILLLIYAASAAVFLPFAKPAHIGSLDGTLA
                     WVCFAYCCLNTLIGYGSFGEALKHWEASKVSAVTTLLPVFTVIFSLLGHYVMPDTFAA
                     PDMNGLGYAGALVVVGGAVTAAVGDRLFKRR"
BASE COUNT         2265 a         2635 c         2204 g         2006 t
ORIGIN      
        1 gcgcccatcg tctagcggtt aggacatcgc cctttcacgg cggtaaccgg ggttcgattc
       61 cccgtgggcg tgccaaattc caaatccccg agattatccc tcggggattt ttattgcctc
      121 ggcaattcat taccatatct ttacctaccc ccttcatcag actctcagac gtaatcgaat
      181 catattcaaa cctttgccgt gcaaaccgat atcacgtaac cggatgcggt gtccgtccaa
      241 cattttaccc gattgaaacg cctgatatat tgcaccccat caacgtggca ttacttttct
      301 taacaatccc ctttgacagc aactgactag ggctttttta tgccatcatc aaatttatag
      361 tggattaact ttaaaccagt acggcgttgc ctcgcctttc cgtactattt gtactgtctg
      421 cggcttcgtc gccttgtcct gatttttgtt aattcactat aatattttct ctcccgattg
      481 aaacaggcgt aacagaatat gcccgaagct ccggctgctt tcttgtttac cgccgcgata
      541 tttagagtat aataccaaat ttgagcaata gttctaaaac agttagaacc atttttcatg
      601 agcctgactg attcgtatac tcggagaaac tgatgcaaaa tatttttgac cctttggtta
      661 ttcgtggaaa atcccttacc cccatcgtgc aaggcggtat gggggtcggt gtttccgcat
      721 cgggtttatc cagcgcggtg gcacgtgaaa acggtatcgg aacgattgcc agtgtggatt
      781 tgcgccacct tcacgaagac ctactcgccg aatcccaaat caatccgagt gaagagaaat
      841 atacgtcttt gaactgtacc gcattggaca gggaaatcca aaaagccaaa agtgcttcag
      901 agggaaaagg gctgattgcg gtcaacgtga tgaaggcggt caaagaccac gccgcatatg
      961 tccgccaggc ttgcgaatca ggggcggatg cggttgtaat gggtgccggt ctgcctttag
     1021 acctgccgga aatgaccgag ggctatcata aatatgtcgc gctgctgccg attctgtccg
     1081 aatcgcgcgg tattaatatc gtcttgaaac gttggatgaa aaaaggcata ttgcccgatg
     1141 cgattgtagt cgaacatcct gcccacgcgg ccggacattt gggtgcatca accgttgaag
     1201 gcgtaaacga tgccaagttc gacttcaaac gcgtgattga ggaaacgttt gaagttttca
     1261 aaagtttagg gctggaaagc gaaaaaatcc cgcttattct tgcgggaggc atggcaaatt
     1321 ttgaaaaagt caaaaccgcc ctaaagaact ggggagcatc cgccgttcaa atcggtacgg
     1381 cttttgccgt taccgaagaa ggagatgcac accttaactt caaaaaaacg ctcgccggtg
     1441 cggaaactga aaaagtagtc gaatttatgt ctgttgccgg tttgccggcg cgcggtgtcc
     1501 gcaccaaatt cctagacagc tacatcaagc gtgaaagcaa acttcagaca aacgccaaag
     1561 ccgacccgcg ccgctgtacc caaggtttaa actgcctgac tagctgcggc ctgcgcgacg
     1621 ggctttccaa agcagggcaa ttctgtattg atatccagct tgctgccgca tttcgtggag
     1681 aagtagataa aggcctgttc ttcagaggta aagacccgct gcccttcggt aatgccatcc
     1741 gcaccgtccg cgagacgata caatatctgc tgacggggag tgaacctgtt gcaacagtag
     1801 gacgctgatg tcaaaacagc cgatactgta tcaaaatgcc gtctgaaaat tttcagacgg
     1861 catctcttta tttgctttca gtattattga aaagtttatc catcggggtc agatccaccg
     1921 cattgccttg gctggtaatc catttgttct cgacgcgcca cacgcctgcc gcgtcctcca
     1981 cgcgcacata ccagtggttg gtcggcgaaa gggttttgaa caccgcctca tattccgccc
     2041 tgccgttctg cgcgctgccg acgggcttga gggcgacggt ttgatcgtcc gccttgcggg
     2101 tcgggtgcat cagcagcagg ttcaaaggct gtttgccgtc aaactcgccg ccgacaaaca
     2161 cttttgccgc attcatatcg ggggaaatga gaacctgcac cccgatatgc cgtctgacgg
     2221 cttcttcatc ccgatgaagc tggatgtcga tatgtttgcc gtctttataa taatcgtccg
     2281 taaccaaatc tgtcgcgtgc tgctgcgcga caaaaaacat agcgacgctg gcgatgacga
     2341 caaaaatcgg ccccgccatc aagatccacg gccagacgtg tttgtaccaa ggtttgattg
     2401 gagtgttttg agacacggtt attctccgat aaaggttgca tcttcttcca agacgaccgg
     2461 cttgccgtcg ggcgcgccgc tttcgcggta ttggaaggta aattcgatag ggtggctgcc
     2521 tttgtccgcg tattccggaa tggtggacac ttggacggga agggttaccg tttcgcgcgg
     2581 ggcaaccttg ataccgcctt cgggcagccc ggtcagggcg atttcgtcaa agcctttgac
     2641 acttgcggta atgagctgtt ctttttcact tttgttgatg atacgcaggc tgtatgcgtt
     2701 ttccagccag cctttggcgt tttcgcgcac cagtacgcca cggtctttca aaatatcgac
     2761 ctcgaccatt ttgcgcgtgg acaaaccggc caggaaggca atgataacta acgccaacac
     2821 cgcgccgtaa cctgccacgc gcggtctgag cagccgtttt ttaatgtctt tttcagaata
     2881 ttcgtgttcc agcgcgcttt cggtcgtata acggattaat ccgcgcggat agcccatttt
     2941 gtccataatc tcatcgcacg cgtcgataca ggcggcgcag ccgatacatt ggtattgcag
     3001 accgttgcgg atgtcgatgc cgacggggca gacttggacg cacatcgcac agttgatgca
     3061 gtcgcccaaa cccgcctctt ccttattgac cgttttcttg cgcgcgccgc gcggttcgcc
     3121 gcgttccgcg tcataagaaa caatcagcgt gtccttgtcg aacatcgcgc tttggaaacg
     3181 tgcatacgga cacatatgca ggcatacttt ttcacgcata atgtgggcga agaagaaggt
     3241 cataaagcca taaaacgctg cggcaaacat cgcgccgcca cctgctgctc cagtgaataa
     3301 atcgggaacg aactggcgga tagggacaaa ccagcctgca aacgtgatgc ccgtccacgc
     3361 gcagacaagg aaaatcagca ggtatttggt ggctttgatg cggattttag tgaaattcca
     3421 cggcgatttt tccagtttca gccgtttgtt tctatcgcct tcgaccaggt tgtcaatcca
     3481 cagcataatt tcggtgtaaa ccgtttgcgg gcaggaatag ccgcaccaca gtcgccctgc
     3541 aatcgtcgtc caccaaaaca gcccgaaggc gcaaatcatc agcagcaagg caaggtaaat
     3601 caaatcgccc acccccaacg acaatccgaa aatgaagaaa tgccgttcgg ggatattgaa
     3661 aacgacggcc tgcctgccgc tccagttgaa ccacggaatg acgtaaaaca caaactgcgt
     3721 cgccaatacg gcggcgatac gcagtttggc gaaccgtcct tccgcctttt tgggatggat
     3781 gcgttcgcct tcgggatgga tttgaatcac gctggctcgc ggatcgaatg ttttttttgc
     3841 tttcggcgcg gcttttgttt gttcggacgt gccgattccg gatgccggac tgccggcttg
     3901 gttttccgtg gtcattctgc attccttaga tttttgattg atggtttgcc cgttaccgcc
     3961 gccgtttgct tttcagacgt catttttctt gttttttaag gcgttgtgtt tcaagttttg
     4021 agaaaatccg tttttcccaa aatatatttc cgctattgta caactttatg cgccgtccgg
     4081 atgtatgggg cggatacatt tcccatccgc atcaaaacgc ctggatttta ccttaccgcc
     4141 cgaacaaaat ccgaatacgg ttaaaaaaaa agactaaaaa aaccgacacc cccatatcgg
     4201 cagaaccgac ggcgcaagct cataaacaaa cgctatcgac aatccggcac acaatctata
     4261 actttttatt tcaaaaggaa taatggcagg cttcgcccgc aaatcgaaaa tccttcccca
     4321 ccggtctcct gccgccgcct tcccccgcgt ccgccctttt cttgaaagca taagcgaatc
     4381 gggcgataat caacgctttc cgattatcca cttatctgaa acaccagcaa ggaaaataca
     4441 aaatgtctca actggcaaac gcaatccgct tcctctcggc cgatgccgtt caaaaagcca
     4501 attccggcca ccccggcgcg cctatgggta tggcggaaat ggcggaaaca ttgtggacga
     4561 aattcctcaa tcacaacccc gccaacccca aattctacaa ccgcgaccgc ttcgtcctct
     4621 ccaacggcca cgcgtctatg ctgttgtaca gcctgctgca cctgaccggc tacaacctaa
     4681 gcattgaaga cttgaaaaac ttccgccaac tgcacagcaa aacccccggc catcccgaat
     4741 acggctacac cgacggcgtg gaaaccacga ccggcccgtt ggggcaaggg attgccaacg
     4801 cggtgggtat ggcattggca gaaaaaatcc ttgccgccga atttaataaa gacggtttga
     4861 acatcgtcga tcattacacc tacgtcttta tgggcgacgg ctgtctgatg gaaggcgtat
     4921 cgcacgaagc ctgctcactc gccggcactt tgggcttggg caaactgatt gttttatatg
     4981 atgacaacaa tatttccatt gatggtaaag tggacggctg gtttaccgaa aacatcccgc
     5041 aacgctttga aagctacggc tggcacgtcg ttcctaacgt aaacggtcat gacaccgccg
     5101 ccattcaagc cgccatcgaa gccgcacgtg ccgaaaccgg caaaccgtcc atcatctgct
     5161 gcaaaacctt aatcggcaaa ggcagtgcca acaaagaagg cagccacaaa acccacggcg
     5221 cacctttggg cgcggacgaa atcgaagcca cgcgcaaaca tttgggctgg acttaccccg
     5281 cctttgaaat cccgcaagaa atttacgatg cgtggaatgc caaagaacaa ggcgcgaaac
     5341 tggaagccga ctggaacgaa ctgttcgcgc aatatcaagc caaatatcct gccgaagccg
     5401 cagaatttgt gcgccgtatg gataaaaagc tgccggacaa tttcgatgaa tacgttcaga
     5461 cggcattgaa agaagtgtgc gccaaagccg aaaccatcgc tacccgcaaa gccagccaaa
     5521 acagcatcga aatcttggca aaagagttgc ctgaattggt gggcggctct gccgacctga
     5581 ccccgtccaa cctgaccgac tggtcaaaca gcgtttccgt tacccgcgac aaaggcggca
     5641 actacatcca ctacggcgtg cgcgagttcg gtatgggcgc gattatgaac ggtttggtat
     5701 tgcacggcgg cgtaaaaccc ttcggcgcga ctttcctgat gttcagcgaa tacgagcgca
     5761 acgccctgcg tatggcggca ctgatgaaaa tcaaccctgt atttgtgttc acccacgatt
     5821 ccatcggttt gggcgaagac ggcccgaccc accagccgat tgagcaaacc gccaccctgc
     5881 gcctgattcc gaatatggac gtatggcggc cgtgcgacac cgccgaatcc ttggtcgctt
     5941 gggcagaagc cgtcaaagcc gccgatcacc cgtcctgcct gattttcagc cgtcaaaacc
     6001 tgaaattcca agcgcgcagc gaacaacaac tggacgacat caaacgcggc ggctacatca
     6061 tcagcgaagc ccaaggcaac gcccaagccg tcatcattgc caccggctca gaagtcgagc
     6121 tggctttgga agcgcaaaaa gccctcgccg cgcaaaacat cgccgtgcgc gtcgtttcca
     6181 tgccgtccac caacgtattc gaccgccaag acgccgccta tcaagccgcc gtcctgcccg
     6241 aaagcctgcc gcgcatcgcc gtagaagccg gccacgccga cggctggtac aaatatgtcg
     6301 gactgaacgg cgcagtcgtc ggcatcaacc gcttcggcga atccgcccct gccgatttac
     6361 tcttcaaagc attcggcttt accgtggaca atgtggtcga tacagtgaaa tccgtgctgt
     6421 aaaccgcagc cgccgcatca aatgccgtct gaacgctttt cagacggcat ttttttgccc
     6481 tccagcctta atgcttcctc attccgccaa tctccattat aatatttgcg aatcactctt
     6541 attcacattt caaaaggaga aacgcatgag cacccgtacc gaacacgaca ccatgggcaa
     6601 tgtcgaagtc ccgtccgaag cctattgggg cgcgcagacc cagcgcagcc gcaacaattt
     6661 caaaatcggc ggcgaaaccc tgccgcagcc gttgatttat gctttggcgc tggtgaaaaa
     6721 agccgccgcc gcgaccaatg tttccctcgg caggattaag ccggaacagg cggatttgat
     6781 tacgcaggcg gcggatgatg tgttgaacgg caagctcgac ggacagtttc ctttagtggt
     6841 ttggcagacc ggctccggca cgcagtccaa tatgaacatg aacgaagtgc tggcgaaccg
     6901 cgccaacgaa atcgccggta cgggtttggc ggcgtatcag cccgtccatc ccaacgacca
     6961 tgtgaaccac gcgcaatcga ccaacgacgc attcccgacc gccatccacg ttgccgccgc
     7021 gattgaaatc aaccgccacc tcatccccgc cgtaaaagcc ctgcgcgaca ccttggacaa
     7081 aaaagcccaa gccttcgccc ctatcgtcaa aatcggccgc acccacttgc aggacgcgac
     7141 gccgctgact ttaggccaag aattttccgg ctacgtttcc cagctcgacc acggcttagg
     7201 ccgtctgaac gacgcgctta aagacttgta tgaacttgct ttgggcggta cggcggtcgg
     7261 cacgggtttg aacagccatc ccgaatacgc cgaaaaagcc gccgccaaac tcgccgaatt
     7321 gtccggcttg ccgtttgtca gcgcgccgaa caaatttgaa gccttgggcg gacgcgatgc
     7381 cgccgttgcc gcttcgggcg cattgaaaac gctggcggca agcctgaata aaatcgccaa
     7441 cgacatccgc tggctggcaa gcggcccgcg ctgcggtttg ggcgaaatca aaatccccga
     7501 aaacgagccg ggttcgtcca tcatgccggg caaagtcaac ccgacccaat gcgaagcgat
     7561 gaccatggtg tgctgccaag tgttcggcaa cgacgttacc atcggcatgg cgggcgcgtc
     7621 gggcaatttc gagctgaacg tctatatgcc cgttatcgcc tacaacctct tgcaatccat
     7681 ccgcctcttg ggcgacgcgt gcaacagctt caacgaacac tgcgccatcg gcatcgaacc
     7741 cgtaccggaa aaaatcgact atttcctgca ccattccctg atgctcgtta ccgcgttaaa
     7801 ccgtaaaatc ggttacgaaa acgccgccaa agtcgccaaa accgcctaca aaaacaacaa
     7861 atcgttgcgc gaaaccgccg ttgagttggg cttgctgacg ggcgaagaat ttgacgaact
     7921 ggtcgttcct gccgatatgg ttcatccgcg ctaatctttc cctcaaataa aatgccgtct
     7981 gaaacctcgt tcggacggca ttttccgttg cctgcgaact agcggcgttt gaacagcctg
     8041 tcccccaccg ccgccgtaac cgcacccccg accacgacca gtgcgccggc ataacccaaa
     8101 ccgttcatat ccggcgcggc aaaagtatca ggcatcacat aatgcccgag caaagaaaat
     8161 attacggtaa acacggggag caaggttgtt accgcgctga ctttggaagc ctcccaatgt
     8221 ttcaacgcct cgccgaacga gccgtaaccg attaacgtat tcaagcagca atacgcaaaa
     8281 caaacccacg ccaacgtacc gtccaaactt ccgatgtgtg ccggtttggc aaacggcagg
     8341 aacacggcgg cacttgccgc ataaatcaac agcagaatct gttgcggtcc gaattgcgcc
     8401 gacagcagct tttgcgccac ggcataacac acccatgcca tactgcctgc cgcacacagc
     8461 aacacgccct tcgcatacgc gcccaaaccc gacaactcgc cgaatttatc gttaaaaaac
     8521 ataagcaaac cggcaagcag caaaaccaag ccgattttct gagcggcagt catccggtct
     8581 ttaaacacca acacgccgac aacaatcatc gtaaacggcg aaatctgcca caaaacctgc
     8641 gtcgtggtcg gcgaaatata atgcagccct tgggcaatca gcacaaagtt tgccgaaatg
     8701 cccgccacgc cgagcagcag cagcctgaat gagcaccaag aaaaatcccg ccgcttcggc
     8761 agccgcccgc ccaatgccag caaaacaaac aataccgccg ccgccacggt aaaacgcacc
     8821 cacaccagcg tcggcgcatc gacaaacttc aatacctgcc gcacggcaat cggcagcgtt
     8881 ccccacgtca tcgccgccaa aagtgccaac gcgaagccta ggtgcggcct ttggttttcc
     8941 atcctgattt tcctattttt aaacaaccgt attgccggac gatgccggtt tgccgcatcg
     9001 ggcaataatg gttcaagcgt ttggcgttta attccaaccc tttgatttca aacaaaccgg
     9061 ctgaagctcg gctattgctt cgcgctattt gaaaacaccg cctgaatttt
//
LOCUS       DAWGNT010000069         9107 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.069, whole genome shotgun sequence.
ACCESSION   DAWGNT010000069 DAWGNT010000000
VERSION     DAWGNT010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9107
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.069"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(235..927)
                     /locus_tag="WHR98_001148"
     CDS             complement(235..927)
                     /locus_tag="WHR98_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEZ2307835.1"
                     /translation="MKRFTYTLSDGLCIEIELKRSAKKNLILRPVNMQTVSINVPPFF
                     QDHALANWLAANETILRNTLAKTPVHPVSHPNLPEWIWYRGIKTKLDTHSQSHIRITS
                     SEILLPRKETAAQIDHLRRLLNERAREYLLPRLEKHAAETGLTPTATDLSNAKTFWGV
                     CRPHTGIRLNWRLIGTPEYVADYVCIHELCHLRHPDHSPRFWHLVNTLTPHTDNAKSW
                     LKAHGRELFVLG"
     gene            complement(1035..2228)
                     /locus_tag="WHR98_001149"
     CDS             complement(1035..2228)
                     /locus_tag="WHR98_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HEZ2307836.1"
                     /translation="MSDQKNRRNALIGAAFLMATSAIGPGFLTQTATFTQALAASFGF
                     VILLSILLDIGAQLNIWRIVAVSEKQAQDIANQVLPGAGYFLAVLIVTGGLAFNIGNV
                     GGAGLGLNLLTGLSPETGAVISGVIAIGVFLFKEAGKVMDKFAQVMGFVMIALTVYVA
                     WQANPPLADAAVHTFMPEKLDAMAIVTLVGGTVGGYITFAGAHRLLDAGIKGKSALPE
                     VSQSSVRAILIASIMRIVLFLAVLGVVSQGVQLNPDNPASTPFEYAAGYIGLLIFGVV
                     IWAASITSVIGAAYTSVSFFSGLSPSIERNKNKWIIAFIAVSTAVFSTIGKPAQVLVF
                     VGALNGLILPISLGLILIAAYKTKIVGDYKHPLWLTVSGVIVVGLMAVLSAITISKYI
                     GGLFG"
     gene            complement(2357..3094)
                     /gene="pxpA"
                     /locus_tag="WHR98_001150"
     CDS             complement(2357..3094)
                     /gene="pxpA"
                     /locus_tag="WHR98_001150"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HEZ2307837.1"
                     /translation="MKQVDLNADLAEGCGSDEALLQLITSANIACAQHAGSIADIRAA
                     LAYAQQNGVRIGAHPGYPDRENFGRTEMNLSEADLRACLNYQLGALQALCRDQGLEMA
                     YVKPHGAMYNQAAKNRALADTVARIVADFDPKLKLMALSGSLLLEAGKAAGLGVISEV
                     FADRRYMPDGTLVPRSRPDAQVDSDEEAIAQVLQMVRDGRVKAVNGSLVAVQADSICL
                     HGDGPHAVVFAEKIRQELLAAGIKVSA"
     gene            complement(3081..4010)
                     /locus_tag="WHR98_001151"
     CDS             complement(3081..4010)
                     /locus_tag="WHR98_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEZ2307838.1"
                     /translation="MIHVSAVQAPAHIQDTGRYGHRRYGIGHAGAMDTVALAAGNILL
                     GNDEGTAAIEIALGGIMLVFERDTPFCLTGAVYQAELDGEPVYSYWRYTARKGQTLKM
                     VRAVQGMYGYVCVAGGFDVPEVMGSRSTDLKAGFGGHQGRMLQKGDCLPIGKGAQELS
                     KVGIAPIPFTDTVHLVPSSEYAAFSEKGRLNLERETWTLQSDSNRMGYRFDGQPLTLS
                     QPLEMLSHAVQAGTVQVPPGGKPIILLADAQTTGGYPKIATVAAADLGRLAQVRFGSK
                     VKFKIIGLKEATALRRKNQAYLNQIRRITHEAG"
     gene            complement(4007..4654)
                     /gene="pxpB"
                     /locus_tag="WHR98_001152"
     CDS             complement(4007..4654)
                     /gene="pxpB"
                     /locus_tag="WHR98_001152"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEZ2307839.1"
                     /translation="MRIEITPISESALVCRLNAPSELGKQQKLWAFAAALGQHDRIEE
                     VVVGMNNLTVFTRFDTDLATLADELQYVWEHTAVTDHQGKLVEIPVCYGGEYGPDLAE
                     VAAFHQTVISEIVRRHTAQTYTVFMMGFQPGFPYLGGLPEALHTPRRAVPRTSVPAGS
                     VGIGGSQTGVYPFASPGGWQIIGRTELPLFRADLNPPTLLAAGDQVRFVAERIEP"
     gene            4838..7045
                     /gene="uvrD"
                     /locus_tag="WHR98_001153"
     CDS             4838..7045
                     /gene="uvrD"
                     /locus_tag="WHR98_001153"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HEZ2307840.1"
                     /translation="MFPDQSAPNLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLT
                     TRIAWLLQSGQASVHSIMAVTFTNKAAKEMQTRLGAMIPVNVRAMWLGTFHGLCHRFL
                     RLHHRDAGLPSSFQILDSGDQLSLIKRLLKSLNIAEEIIAPRSLQGFINAQKESGLRA
                     SVLSAPDPHTSRMIECYAEYDKICQREGVVDFAELMLRSYEMLQSNEILRQHYQNRFN
                     HILVDEFQDTNKLQYAWLKLMAGGNAAVFAVGDDDQSIYRFRGANVGNMTALMEEFHI
                     DAPVKLEQNYRSVGNILAAANAVIENNDERLGKNLRTDAEAGDKIRYYSAFTDLEEAR
                     FIVDETKALEREGWDLDEIAVLYRSNAQSRVIEQSLFRSGIPYKIYGGLRFYERQEIK
                     HALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAK
                     AAKIAAFVRLIEALRNQVGQLPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELV
                     NAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHA
                     AKGLEFNAVFLTGMEEGRFPSEMSLAERGGLEEERRLMYVAITRARKRLYITMAQQRM
                     LHGQTQFGIVSRFVEEIPPEVLHYLSVKKTAYDSYGSPRQTAASKDKIIDDYKQPQTY
                     AGFRIGQNVRHAKFGTGVIIDAADKGESARLTINFGKQGVKELDTKFAKLEAM"
     gene            7402..7941
                     /locus_tag="WHR98_001154"
     CDS             7402..7941
                     /locus_tag="WHR98_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEZ2307841.1"
                     /translation="MSQVFKDFDLSSVWESDSWADENYKEAPFTPEILAAVESELGYK
                     LPQSFIELMAVQNGGIFVKNCFPTTQRNSWAKDHVQICEVSGIGFEKEGSLCGETGQK
                     LWMEEWEYPPIGVYFANDPSGGHAMFALDYRACGKDGEPKVVFVEQESDFEIVELAPD
                     FETFIRSLRHEDEFIDEEI"
     gene            complement(8131..8346)
                     /locus_tag="WHR98_001155"
     CDS             complement(8131..8346)
                     /locus_tag="WHR98_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307842.1"
                     /translation="MNIINYTGDDIIISLTREELQLLRSLVIEIYAGVCIDAEEFEIV
                     SGIRNSKLVQELEQQLIEAYDLMDTKG"
     gene            complement(8354..8557)
                     /locus_tag="WHR98_001156"
     CDS             complement(8354..8557)
                     /locus_tag="WHR98_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307843.1"
                     /translation="MLKRNLGFDTFKLITIFFLGIRRLQSKHIRAIWDDKSGAIVIRD
                     PNSKDGGTAFRPTLGKTYFDKQK"
     gene            complement(8470..8829)
                     /locus_tag="WHR98_001157"
     CDS             complement(8470..8829)
                     /locus_tag="WHR98_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 8 family protein"
                     /protein_id="HEZ2307844.1"
                     /translation="MIKLDLKSINLYDIDFEKFTPEIPDNFHRWIDLDIGIEGEQGSS
                     IFSLCICSPKWISHHCNKEGFFWSNALILEQFDHKIIKSEIDKILEYCSKETWDLTLS
                     NLLRFFSWEFEDYNPNT"
     gene            8882..>9107
                     /locus_tag="WHR98_001158"
     CDS             8882..>9107
                     /locus_tag="WHR98_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEZ2307845.1"
                     /translation="MRKSRLSRYKQNKLIELFVAGVTARTATEPDSIVYTDCYRSYDV
                     LDVSEFSHFRINHSTHFAERQNHINGIENFW"
BASE COUNT         2296 a         2503 c         2247 g         2061 t
ORIGIN      
        1 ctaccgcata ctggcctttt tctgttaggg aaagttgcac ttcaaatgcg aatccgccga
       61 cctctttcag ttacagcagc ttgatccctt tcccttatcc aacgggggaa ggctaggata
      121 gggtggcttg caaatataca gaacaaggga caagagccac cctctctcca accctctccc
      181 tccgtacggg agggggtgga ttctcgcggg cgaagcccac gctacggtta gcctttaccc
      241 cagcacaaac aattcccgcc cgtgcgcctt cagccaactt ttagcattgt cggtatgcgg
      301 cgtcagcgtg ttcaccaaat gccaaaagcg cggactgtgg tcggggtggc ggaggtggca
      361 gagttcgtgg atgcagacat agtcggcgac gtattcgggc gtgccgatca gccgccagtt
      421 gaggcggatg ccggtgtgcg ggcggcatac gccccaaaag gttttggcgt tgctcaggtc
      481 tgtggcggtg ggcgtcagtc ctgtttcggc tgcgtgtttt tcaaggcggg gcagcaggta
      541 ttcgcgggcg cgttcgttca acaggcggcg caggtggtcg atttgtgcgg cggtttcttt
      601 tcggggaagc aggatttcag acgacgtgat acggatatgg ctttggctgt gggtatccag
      661 cttggtcttt attccccgat accaaatcca ctcgggtaag tttgggtggg aaacaggatg
      721 cacgggcgtt ttggcaagcg tgttccgcaa aatcgtttcg tttgccgcca gccagtttgc
      781 taacgcgtgg tcttgaaaaa agggtgggac gttgatgctg accgtctgca tattgacggg
      841 gcgcagaatc agatttttct tggcactgcg tttgagttcg atttcgatgc acaaaccgtc
      901 ggaaagagta taggtgaagc gtttcatagt tgtgaatagg tttcagaccg gatacatcgt
      961 ctgaaacagg aattttccat atcaggcggc aaacttcgga taatatacaa aatcaaacat
     1021 ctgcgctaca aggttcagcc gaacaagccg ccgatatatt tgctgatggt gatggcgctg
     1081 agtactgcca tcaaaccgac cacaatcacg ccggaaacgg tgagccacag cgggtgtttg
     1141 tagtcgccga caattttggt tttgtaggcg gcaatcagaa tcagaccgag ggaaatcggt
     1201 aaaatcaggc cgtttaatgc gcctacgaac accagcacct gcgccggttt gccgatggtg
     1261 gaaaatacgg cggtggacac ggcgataaag gcaataatcc atttgttttt attgcgttcg
     1321 atagacgggc tgagaccgga gaagaacgac accgaagtat aagccgcacc aatcaccgaa
     1381 gtaatcgaag ccgcccaaat caccacgccg aaaatcagca ggccgatgta tcccgccgca
     1441 tattcaaacg gtgtggaagc agggttgtcg ggattgagct gtacgccttg gctgaccacg
     1501 cccaaaaccg ccaaaaacaa tacaatccgc ataatcgagg caatcaggat cgcccgcacc
     1561 gagctttggc tcacttccgg caacgccgat ttgcctttga tacctgcgtc cagcagacgg
     1621 tgcgcaccgg cgaaggtgat gtagccgccg accgtgccgc ccaccagtgt aacaatcgcc
     1681 attgcatcga gtttttccgg cataaaggta tgcacggcgg catctgccag cggcggattc
     1741 gcctgccatg ccacataaac cgtcagcgca atcattacga aacccatcac ttgggcgaat
     1801 ttgtccatca ctttgcctgc ttctttaaac agaaacacac cgatggcaat cacgccgctg
     1861 atcacggcac cggtttccgg tgacagtccg gtcagcaggt tcagacccaa gcctgcgccg
     1921 ccgacgttgc caatattgaa cgccaaaccg cccgtcacaa tcagcacagc caagaaatag
     1981 cctgcgccgg gcaagacctg attggcaata tcctgcgcct gtttttcgga aacggcgaca
     2041 atccgccaaa tattgagctg cgccccgatg tcgagcagaa tcgagagcag aatcacaaag
     2101 ccgaaacttg ccgccagtgc ttgggtgaag gtggcggttt gggtcagaaa gcccgggccg
     2161 atggcggaag tcgccatcag gaatgcagcg ccgattaagg catttctgcg gtttttttga
     2221 tcagacataa tcgcttatcc tctataaaat tggttgttgc tgtgtttggg cgaaacctgc
     2281 ggttttagct acgcagaaac tcgctttgct cgttttggcg aaacctgcgg ttttcagacg
     2341 gcctatgaac tgtttttcaa gcagaaactt tgatgcctgc cgccagtagt tcctgccgga
     2401 ttttttcggc aaacaccacg gcgtgcggcc cgtctccgtg cagacagatg ctgtcggctt
     2461 gcacggcaac caggctgccg ttcactgctt tgacccgccc gtcccgcacc atctgcaata
     2521 cttgggcgat ggcttcttcg tcgctgtcca cctgcgcatc ggggcggctg cggggaacca
     2581 gcgtaccgtc gggcatatag cggcggtcgg cgaatacttc ggaaatcaca cccaagcctg
     2641 cggcttttcc ggcttccaag agcaggctgc cggaaagtgc catcaatttc aatttcgggt
     2701 cgaaatccgc cacaattcgg gcaacggtat ccgccagcgc acggtttttc gccgcttggt
     2761 tgtacattgc gccgtgcggt ttgacataag ccatttccaa accctgatca cggcacaagg
     2821 cctgcaatgc gcccaactgg taattcagac acgcccgcaa atcggcttcg gacagattca
     2881 tttcggtacg gccgaagttt tcccgatcgg gatagccggg gtgtgctccg atgcgcacgc
     2941 cgttttgttg ggcatacgcc aatgccgccc gaatatcggc aatgctgccg gcgtgttggg
     3001 cgcaggcgat gttggccgaa gtaatcagct gcaacaaggc ttcgtcgctg ccgcagcctt
     3061 cggcgagatc ggcgtttaaa tcaacctgct tcatgggtga ttctccgtat ttggttcaga
     3121 taggcttggt ttttgcgccg cagggcggtg gcttctttca agccgattat tttgaatttg
     3181 actttgctgc cgaagcgcac ctgtgccagc ctgcccaaat cggcggcggc aacggtagcg
     3241 attttcggat aaccgccggt ggtttgcgca tcggccagca ggataatcgg tttgccgccg
     3301 ggcggcacct gcacggttcc tgcctgaaca gcgtgggaca gcatttccaa aggttgcgac
     3361 agggtcagcg gctgtccgtc gaagcggtag cccatgcggt tgctatcgct ttgcagcgtc
     3421 cacgtttccc gttccagatt cagacgccct ttttcactga aagcggcata ttccgacgaa
     3481 ggaacaaggt ggacggtatc ggtaaacggt atcggggcaa tgccgacttt ggacaattcc
     3541 tgcgcacctt tgccgatggg gagacaatca cctttttgca gcattctgcc ctgatggccg
     3601 ccgaaaccgg ctttcaggtc ggtgcttctc gaacccatca cttccggcac atcaaatccg
     3661 cccgccacgc acacatagcc gtacatgccc tgcacggcac gcaccatttt caaggtctgc
     3721 cctttgcggg cggtataacg ccaatacgaa tagaccggtt cgccgtccaa ttccgcctga
     3781 tacacggcac cggtgagaca aaacggcgta tcccgttcaa acaccagcat tatcccgccc
     3841 aaagcgattt cgattgcggc cgtgccttcg tcgttgccca ataaaatatt acccgccgcc
     3901 aaagcaaccg tgtccatcgc accggcatga ccgatgccgt aacgccggtg tccgtagcgt
     3961 ccggtatcct gaatatgcgc cggtgcctgc actgccgaaa cgtgaatcat ggctcaatcc
     4021 tttctgcaac aaagcggact tggtcacccg ccgccagcag ggtcggcgga ttcaaatcgg
     4081 ctcggaacaa gggtaattcg gttctgccga taatctgcca gccgccgggc gaagcgaacg
     4141 gatacacacc ggtctgactg ccgccgatac cgaccgaacc ggcaggaacg gacgttctcg
     4201 gcacggcacg gcggggcgtg tgcaatgctt cgggcaagcc gcccagataa gggaaaccag
     4261 gctggaagcc catcataaat acggtataag tttgcgccgt atggcggcgg acgatttcgg
     4321 aaataaccgt ctgatggaaa gcagcgactt ccgccaaatc cgggccgtat tcgccgccgt
     4381 agcagacggg aatttccacc agtttgccct gatggtctgt aacggcggtg tgttcccaca
     4441 catattgcaa ttcatcggca agcgtcgcca aatcggtatc gaaacgggtg aacacggtca
     4501 gattgttcat gccgaccacc acttcctcaa tcctgtcgtg ctgcccgagc gcagcggcaa
     4561 acgcccacaa cttttgctgt ttgcccagtt cggaaggtgc attcagtcgg cagaccaaag
     4621 cggattcgct gattggtgtg atctctattc tcatttgttg ttcattttgg ttatgtttta
     4681 atgaatctat atgcaggggc ggcggtttgt caatatcttc tgtgctgcat catcaaaccg
     4741 tcgattggaa aagtgctgcc ctgccgctgc actttttcag acgaccttaa accgtttcta
     4801 ttaaaatagc gcattccact tttcagacgg catctctatg tttcccgacc aatccgcccc
     4861 caacctgctg caaggcttga accctgaaca actttccgcc gtaacctggc cgccgcaatc
     4921 cgcccttgtg ctggcaggcg cgggcagcgg caaaacgcgc gtgctgacca cgcgtatcgc
     4981 atggctgttg caaagcggac aagccagcgt gcatagcatt atggcggtaa cgtttaccaa
     5041 taaagccgcc aaagaaatgc agacccgttt gggcgcaatg attcccgtca acgtccgcgc
     5101 catgtggctc ggcacgtttc acggtctctg ccaccgcttt ttgcgcctgc accaccgcga
     5161 cgcaggcctg ccgtcttcct ttcaaattct cgacagcggc gaccagcttt ccctcatcaa
     5221 acgcctgctc aaaagcctca acatcgccga agaaatcatc gcaccgcgtt cgctgcaagg
     5281 ctttatcaac gcgcaaaaag aatccggttt gcgcgcttcc gtgttgagcg cgcccgaccc
     5341 gcacacaagc cgcatgatcg aatgctacgc cgaatacgac aaaatctgcc aacgcgaagg
     5401 cgtggtcgat tttgccgaac tcatgctccg cagctacgaa atgctgcaaa gcaacgaaat
     5461 cctgcgccag cattaccaaa accgcttcaa ccacattctg gtcgacgagt tccaagacac
     5521 caacaaactg caatacgcct ggctcaaact catggcgggc ggaaacgcag cggtatttgc
     5581 cgtcggcgac gacgaccaaa gcatttaccg tttccgtggc gcaaacgttg gcaatatgac
     5641 cgcgctgatg gaagaattcc acatcgacgc gcccgtcaaa ctcgaacaaa actaccgctc
     5701 cgtcggcaac atccttgccg ccgccaacgc tgttatcgaa aacaacgacg aacgcctcgg
     5761 caaaaacctg cgcaccgacg ccgaagcagg cgacaaaatt cgctactact ccgcctttac
     5821 cgacctcgaa gaagcccggt tcatcgtgga cgaaaccaaa gccctcgaac gcgaaggctg
     5881 ggatttggac gaaatcgccg tcctctaccg cagcaacgcc caatcgcgcg tcatcgaaca
     5941 aagcctgttc cgcagcggca tcccctacaa aatctacggc ggcttgcgct tttacgaacg
     6001 ccaagaaatc aaacacgcgc tcgcctacct acgcctcgcc gtcaatcccg acgacgacaa
     6061 cgccctcttg cgtgtcatca acttcccacc gcgcggcatc ggcgcacgca ccgtcgagaa
     6121 ccttcagacg gcctcaaacg aacaaggcat caccctctgg caagccgcct gcaacgccgg
     6181 cgcgaaagcc gccaaaatcg ccgccttcgt ccgcctgatt gaagcactgc gcaaccaagt
     6241 cggacaactg cccctgtccg aaatcatcgt cggcatcctc aaagacagcg gcctgaccga
     6301 acactaccga acccaaaaag gcgacaacca agaccgcctc gacaaccttg acgaactcgt
     6361 caacgccgcc atcgagttca aacccgaaga cagcaacttt gaaaccctgc ccgaaaacat
     6421 ttcagacgac cccgccttcc ccatcctcgc cttcctcagc aacgccgccc tcgaatccgg
     6481 cgaaaaccaa gcaggcgcag gtgaaaaagc cgtccaactc atgaccgtcc acgccgccaa
     6541 aggcttggaa ttcaacgccg tcttcctcac cggcatggaa gaaggccgct tccccagcga
     6601 aatgagcctt gccgaacgcg gcggcctcga agaagaacgc cgcctcatgt acgtcgccat
     6661 cacccgcgcc cgcaaacgcc tctacatcac catggcacag caacgcatgc tgcacggaca
     6721 aacccaattc ggcatcgtct cccgcttcgt cgaagaaatc ccacccgaag tattgcacta
     6781 cctgtccgtc aaaaagaccg cctacgacag ctacggcagc ccgcgccaaa ccgccgcatc
     6841 caaagacaaa atcatcgacg actacaaaca gccccaaacc tacgcaggct tccgtatcgg
     6901 acaaaacgtc cgccacgcca aattcggcac cggcgtgatt atcgatgccg cagataaagg
     6961 cgaatccgcc cgactgacca tcaacttcgg caaacagggc gtgaaagagt tggataccaa
     7021 gtttgcgaaa ttggaagcga tgtaaatttg aaatgcaggc tggatactcg tatccgacaa
     7081 aaatatttga cgcgtctatc gtttccgaaa aaccgctgtt ggaaaatgtc ggattcgaga
     7141 atccgaccta tggcaaaaaa ctgtagcaag gacaaggcaa aaggccgtct gaatccggta
     7201 acaacaaatt ttgccgaaac ctccgccgtc attcccgcgc aggcgggaat ccagaccttt
     7261 cggcacggga acttatcgga taaaaggttt ctttagattc cacgttctag attcccgcct
     7321 gcgcgggaat gacggacggt aaaagccggg tatagatacc taacccttgt ttatagctga
     7381 aaatcaataa ggaagaacat tatgtcccaa gtttttaaag attttgattt gtcctccgta
     7441 tgggaatccg acagttgggc agatgaaaac tacaaagaag ccccgtttac ccctgaaatt
     7501 ttggctgccg tagaaagtga actgggctat aaattgccgc aaagttttat tgaattgatg
     7561 gcggtacaaa acggcggaat atttgtcaaa aactgttttc cgaccacaca gagaaattcg
     7621 tgggcgaaag atcatgtgca aatttgcgag gtatcgggca tcggctttga aaaagaaggg
     7681 agtttgtgcg gcgaaacagg gcaaaaactt tggatggaag aatgggaata tccgcccatc
     7741 ggcgtgtatt ttgccaacga cccgtcaggc ggtcatgcca tgtttgcctt ggactatcgg
     7801 gcgtgtggaa aagacggcga gccgaaagtg gtgtttgtcg agcaagaatc ggattttgaa
     7861 atcgtcgaac ttgcccccga ttttgaaacc tttatccgca gcttgcggca tgaagatgag
     7921 tttattgacg aggaaatata aaacggcggt tgaaaaaccg gaatcatcaa gggaaaacgg
     7981 gcgaaataac ggataatcgc ttgaatccgt aaggaaaacg gtttggtgga acgcgccatc
     8041 caagaccttt gcaaagaaaa actgtctccg acagcattga cattattaac agaacttatc
     8101 aagtttggag ctatctcaaa tataattcgg ttatcctttt gtatccatta aatcatatgc
     8161 ttcaattaat tgttgttcta gctcttgtac caattttgaa ttgcgaattc ctgacacaat
     8221 ctcaaattct tctgcatcta tgcaaacacc tgcataaatt tcaataacaa gggaacgcaa
     8281 taattgaagc tcttctcttg ttaaagaaat aataatgtca tcacctgtgt aattgattat
     8341 attcataata attttatttt tgtttgtcaa agtaagtttt gcctaaggtt ggtctaaatg
     8401 cagttccacc atcttttgaa tttgggtctc tgattacaat tgctccagac ttatcatccc
     8461 aaattgctct tatgtgtttg gattgtaatc ttcgaattcc caagaaaaaa atcgtaataa
     8521 gtttgaaagt gtcaaatccc aagtttcttt tgagcaatat tctaatattt tatcaatttc
     8581 acttttaata atcttatgat caaactgttc taatattaat gcattagacc aaaaaaaacc
     8641 ttctttatta caatgatggg aaatccattt aggagaacaa atgcaaagtg aaaaaataga
     8701 tgagccttgt tctccttcga ttccgatatc caaatctatc catctatgga aattatctgg
     8761 aatttcgggg gtaaattttt caaaatcaat atcatataaa tttatgcttt ttaaatccaa
     8821 tttaatcatt agggctgtcc tagataaata gggaaattca aattaagtta gaattatccc
     8881 tatgagaaaa agtcgtctaa gccggtataa acaaaataaa ctcattgagc tatttgtcgc
     8941 aggtgtaact gcaagaacag caacagagcc tgacagcatt gtttatacgg attgttatcg
     9001 tagctatgat gtattagatg tgagcgaatt tagccatttc cgtatcaatc acagcacaca
     9061 ttttgctgaa cgacaaaacc atatcaatgg aattgagaat ttttgga
//
LOCUS       DAWGNT010000070         9071 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.070, whole genome shotgun sequence.
ACCESSION   DAWGNT010000070 DAWGNT010000000
VERSION     DAWGNT010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9071
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.070"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(129..464)
                     /locus_tag="WHR98_001159"
     CDS             complement(129..464)
                     /locus_tag="WHR98_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003699221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEZ2307846.1"
                     /translation="MFKDWKEHTALVKKSFGELGKAHPKMLQAYGALEQAAAAEALDA
                     KTRELIAIAVAITTRCESCISVHAAAAAKAGATDSEIAGALATAIALNAGAAYTYALR
                     ALEAVETQK"
     gene            593..1498
                     /gene="mtrA"
                     /locus_tag="WHR98_001160"
     CDS             593..1498
                     /gene="mtrA"
                     /locus_tag="WHR98_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter MtrCDE transcriptional
                     activator MtrA"
                     /protein_id="HEZ2307847.1"
                     /translation="MDILDKLVDFAQLTGSVDVQCLLGGQWSVRHETLQREGLVHIVT
                     SGSGYLCIDGETSPRPVSTGDIVFFPRGLGHVLSHDGKCGESLQPDMRQHGAFTVKQC
                     GNGQDMSLFCARFRYDTHADLMNGLPETVFLNIAHPSLQYVVSMLQLESKKPLTGTVS
                     VVNALSSVLLVLILRAYLEQDKDVELSGVLKGWQDKRLGHLIQKVIDKPEDEWNVDKM
                     VAAANMSRAQLMRRFKSRVGLSPHAFVNHIRLQKGALLLKKNPDSVLSVALSVGFQSE
                     THFGKAFKRQYHVSPGQYRKEGGQK"
     gene            complement(1560..2048)
                     /locus_tag="WHR98_001161"
     CDS             complement(1560..2048)
                     /locus_tag="WHR98_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEZ2307848.1"
                     /translation="MKKYLIPLSIVAVLSGCQSIYVPTLTEIPVNPINTVKTEAPAKG
                     FRLASSHWTDVAKISDEATRLGYQVGIGKMTKVQAAQYLNNFRKRLVGRNAVDDSMYE
                     IYLRSAIDSQRGAINTEQSKLYIQNALRGWQQRWKNMDVKPNNPAFTNFLMEVMKMQP
                     LK"
     gene            2195..3097
                     /locus_tag="WHR98_001162"
     CDS             2195..3097
                     /locus_tag="WHR98_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEZ2307849.1"
                     /translation="MDTAKKDILGSGWMLVAAACFTIMNVLIKEASAKFALGSGELVF
                     WRMLFSTVALGAAAVLRRDTFRTPHWKNHLNRSMVGTGAMLLLFYAVTHLPLATGVTL
                     SYTSSIFLAVFSFLILKERISVYTQAVLLLGFAGVVLLLNPSFRSGQETAALAGLAGG
                     AMSGWAYLKVRELSLAGEPGWRVVFYLSVTGVAMSSVWATLTGWHTLSLSSAVYLSGI
                     GVSALIAQLSMTRAYKVGDKFTVASLSYMTVVFSALSAAFFLGEELFWQEILGMCIII
                     LSGILSSIRPTAFKQRLQSLFRQR"
     gene            complement(3138..4268)
                     /locus_tag="WHR98_001163"
     CDS             complement(3138..4268)
                     /locus_tag="WHR98_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEZ2307850.1"
                     /translation="MTKHLPLAVLTALLLAACGGSDKPPAEKPAPAENQNVLKIYNWS
                     EYVDPETVADFEKKNGIKVTYDVYDSDETLESKVLTGKSGYDIVAPSNAFVGRQIKAG
                     AYQKIDKSLIPNYKHLNPEMMRLMDGVDPGHEYAVPFYWGTNTFAINTERVKKALGTD
                     KLPDNQWDLVFDPEYTSKLKQCGISYLDSAAEIYPMVLNYLGKNPNSSNTEDIREATA
                     LLKKNRPNIKRFTSSGFIDDLARGDTCVTIGFGGDLNIAKRRAEEAGGKEKIRVMMPK
                     EGVGIWVDSFVIPKDAKNVANAHKYINDFLDPEVSAKNGNFVTYAPSSKPARELMEDE
                     FKNDNTIFPTEEDLKNSFIMVPIQPAALKFMVRQWQDVKAGK"
     gene            4473..7097
                     /gene="alaS"
                     /locus_tag="WHR98_001164"
     CDS             4473..7097
                     /gene="alaS"
                     /locus_tag="WHR98_001164"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEZ2307851.1"
                     /translation="MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQ
                     FKDVFLGFDKRPYSRATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFK
                     RDAIHFAWEFLTSPEWLNIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKG
                     AKYASDNFWQMGDTGPCGPCSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFN
                     RDEQGNMNPLPKPSVDTGMGLERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSME
                     EPSLKVIADHIRSCSFLIADGVLPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLV
                     ADLVKEMGGAYPELKEKQAQIEEALKNEESRFAQTLETGMALLENALAKGGKTLDGEI
                     IFKLYDTYGFPYDLTADMARELGIELDEAGFEREMEAQRARARAAQSFKANAQLPYDG
                     QDTEFKGYSERQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY
                     IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH
                     LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAV
                     NAAIMSMEDAQKTGAMMLFGEKYGDEVRVLQMGGFSTELCGGTHVSRTGDIGLFKIIS
                     EGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA
                     LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNA
                     VILLAAVNDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQVGGKGGGRPDLAQAGGTDAG
                     KLPEMLVSVESWLCQKLS"
     gene            7159..7890
                     /locus_tag="WHR98_001165"
     CDS             7159..7890
                     /locus_tag="WHR98_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307852.1"
                     /translation="MNTKTELQKLLEEDISTLTETLICADALPPRYVRSIATPIVRRW
                     LIDKQLNILAKEIGLTIELPILDTSLVFEKLSTLENKVNFYMAGGVYLGGEFISSIYH
                     SSQEFSGEPIIYAEPNIILCPAEKFLTLKRVFHNGNIFNMNQIITFLSNKQGGVHFDK
                     NYDKYKTWQVAIEKAANFLKLGNPYNEDKLSLSEEHDTILVVLPLEKGYEWNCLEIEV
                     LSAAQSLANIYCNKVRLIDGHVWKE"
     gene            8473..>9071
                     /locus_tag="WHR98_001166"
     CDS             8473..>9071
                     /locus_tag="WHR98_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEZ2307853.1"
                     /translation="MQEIGRTKPSALPEYYAVSDFAHFHLYRRVPEEGVENQWQFPLE
                     ALPEYITRGVFDFMFGIEAKVRQIQEEADIQAAAAIGRLHDALKEEGIYEEHELRLFI
                     TRLLFLFFADDSAVFQRNYLFQDFLESCKETDTLGDKLNQLFEFLNTPDQKRSKTQSE
                     KFKGFEYVNGGLFKERLRTFDFTAKQHRALIDCGNFDWR"
BASE COUNT         2312 a         2390 c         2186 g         2183 t
ORIGIN      
        1 cttacccctt gtttctcaaa tgccgtctga aaaaacggct gcatatgttg tctacaaaat
       61 atcgggaagc ataacaggca aaatgccgtc tgaaatattt tcagacggca tttcttatcc
      121 gaaacggatt atttttgcgt ttcaaccgct tccaatgcac gcagggcata agtgtaagcg
      181 gcaccggcat tcagggcgat ggcggttgcc aatgcgcctg cgatttcgct gtcggtcgca
      241 ccggctttgg cggcagcggc ggcgtgaacg ctgatgcagc tctcgcaacg agtggtaatg
      301 gcaacggcga tggcaatcag ttcgcgcgtt ttggcatcaa gtgcttcggc ggcggcggcc
      361 tgttccaatg cgccgtaggc ctgcagcatt ttaggatgcg ccttacccag ctcgccgaac
      421 gattttttaa ccaatgcggt atgttctttc caatctttaa acattttctt ttcctttctc
      481 ttgcgtttaa ccctgatacg cgcttgcgta tctgttttcg atgtgcgtat tattgcaatt
      541 attcagttgt gtttctcgtt taatcatctc attttatggt tcaaaaagat ttatggacat
      601 tctggacaaa ctggtcgatt tcgcccaatt gacgggcagt gtggatgtgc agtgcctttt
      661 gggcggacaa tggtcggtac ggcatgaaac cttgcaacgc gaaggattgg tacacattgt
      721 tacatcgggc agcggctatc tctgcatcga cggcgaaact tccccgcgtc cggtcagtac
      781 aggggatatt gtatttttcc cgcgcggctt gggtcatgtg ttgagccacg acggaaaatg
      841 cggagaaagt ttacaaccgg atatgcggca gcacggtgcg tttacggtca agcagtgcgg
      901 caacggacaa gatatgagcc tgttttgcgc ccgtttccgc tacgacaccc acgccgattt
      961 gatgaacggg ctgcctgaaa ccgtttttct gaacattgcc catccgagtt tacagtatgt
     1021 ggtttcaatg ctgcaactgg aaagcaaaaa acctttgacg gggacggttt ccgtggtcaa
     1081 cgcattgtcg tccgtcctgc tggtgcttat cctgcgcgcc tatctcgaac aggataagga
     1141 tgtcgaactc tcgggcgtat tgaaaggttg gcaggacaaa cgtttgggac atttaatcca
     1201 aaaggtgata gacaaaccgg aagacgaatg gaatgtcgac aaaatggtgg cggctgccaa
     1261 tatgtcgcgc gcgcaactga tgcgccgttt caaaagccgg gtcggactca gcccgcacgc
     1321 ctttgtgaac catatccgcc tgcaaaaagg cgcgttgctg ctgaaaaaaa acccggattc
     1381 ggttttgtcg gtcgcactgt cggtaggctt tcagtcggaa acgcacttcg gcaaggcgtt
     1441 caaacggcaa tatcacgttt cgccgggtca ataccggaaa gaaggcgggc aaaaataaat
     1501 cggggcttca aacgcaaatg ccgtctgaaa aggctttcat acagcatttg cgtaccgcgt
     1561 catttcaagg gctgcatctt catcacttcc atcaaaaagt tggtaaatgc ggggttgttg
     1621 ggtttgacat ccatattttt ccaacgctgc tgccagccgc gcaaggcatt ctggatatac
     1681 agcttggact gttccgtatt gattgcgccc cgctggctgt ctatcgccga acgcaggtag
     1741 atttcataca tactgtcatc gacggcattg cgtccgacca ggcgttttct gaagttgttc
     1801 agatattgcg ccgcctgaac cttggtcatt ttaccgatac ccacctgata gcccaagcgc
     1861 gtcgcttcat cgctgatttt ggcaacatcc gtccaatgcg aagaggcaag gcggaaacct
     1921 tttgcaggtg cttccgtttt gacggtattg ataggattca cggggatttc cgtcaatgtg
     1981 ggcacataaa tagactggca gccggaaaga actgccacaa tggaaagagg gataaggtat
     2041 tttttcatgc ccccattata atcaagtttg ccttgagaaa acaaattgtt cggcaagaaa
     2101 aataaaattt cggcatcaga agcaggcaaa aacacattcc acaagccttg ccgcaaggtt
     2161 tacaatccga ccgtccttat cgcaacgacc gtttatggat accgcaaaaa aagacatttt
     2221 aggatcgggc tggatgctgg tggcggcggc ctgctttacc attatgaacg tattgattaa
     2281 agaggcatcg gcaaaatttg ccctcggcag cggcgaattg gtcttttggc gcatgctgtt
     2341 ttcaaccgtt gcgctcgggg ctgccgccgt attgcgtcgg gacaccttcc gcacgcccca
     2401 ttggaaaaac cacttaaacc gcagtatggt cgggacgggg gcgatgctgc tgctgttcta
     2461 cgcggtaacg catctgcctt tggccaccgg cgttaccctg agttacacct cgtcgatttt
     2521 tttggcggta ttttccttcc tgattttgaa agaacggatt tccgtttaca cgcaggcggt
     2581 gctgctcctt ggttttgccg gcgtggtatt gctgcttaat ccctcgttcc gcagcggtca
     2641 ggaaacggcg gcactcgccg ggctggcggg cggcgcgatg tccggctggg cgtatttgaa
     2701 agtgcgcgaa ctgtctttgg cgggcgaacc cggctggcgc gtcgtgtttt acctttccgt
     2761 gacaggtgtg gcgatgtcgt cggtttgggc gacgctgacc ggctggcaca ccctgtccct
     2821 ctcatcggcg gtttatctgt cgggcatcgg cgtatccgcg ctgattgccc aactgtcgat
     2881 gacgcgcgcc tacaaagtcg gcgacaaatt cacggttgcc tcgctttcct atatgaccgt
     2941 cgttttttcc gccctgtctg ccgcattttt tctgggcgaa gagcttttct ggcaggaaat
     3001 acttggtatg tgcatcatta tcctcagcgg cattttgagc agcatccgcc ccactgcctt
     3061 caaacagcgg ctgcaatccc tgttccgcca aagataaaaa atgccgtccg aacatccttc
     3121 agacggcata tcgggcttta tttccccgcc ttcacatcct gccactggcg caccataaac
     3181 ttcaatgccg ccggctggat aggcaccatg ataaagctgt ttttcaaatc ctcctcggtt
     3241 gggaaaatcg tattgtcgtt tttaaattcg tcttccatca gctcacgcgc cggcttgctc
     3301 gaaggcgcat aagtaacgaa attgccgttt ttcgccgaca cttccggatc gaggaagtcg
     3361 ttgatgtatt tgtgcgcgtt ggcgacgttt ttcgcatctt tcggaatcac gaaagaatcc
     3421 acccaaatcc ccacgccctc tttgggcatc atcacgcgga ttttttcctt gccgcccgct
     3481 tcttcggcac ggcgtttggc gatgttcaaa tcgccgccga aaccgattgt tacgcaggta
     3541 tcgccgcgcg ccaaatcatc gataaagccg gacgaagtaa agcgtttgat attggggcgg
     3601 tttttcttga gtagggcggt tgcctccctg atgtcttccg tattgctgct gttcgggttt
     3661 ttacccaaat agttcaacac cataggatag atttccgccg cgctgtccaa atagctgatg
     3721 ccgcattgct tgagtttgga cgtgtattcg gggtcgaaca ccaaatccca ctggttgtcc
     3781 ggcagcttgt ccgtacccaa agcctttttc acgcgttcgg tattgatggc gaaggtattt
     3841 gtcccccaat aaaacggcac ggcgtattcg tggccgggat cgaccccgtc catcagcctc
     3901 atcatttcgg ggttgaggtg tttataattg ggaatcagcg acttatcgat tttctgatac
     3961 gcacctgcct taatctgcct gcccacaaac gcattggacg gcgcgacaat gtcgtaaccg
     4021 gacttgcctg tcagcacctt gctttccagc gtttcatcgc tgtcgtacac atcataagta
     4081 accttgatgc cgtttttctt ttcaaaatcg gcaacggttt ccggatcgac atattccgac
     4141 cagttgtaaa ttttcaatac gttttggttt tccgccggtg ccggtttttc ggcaggcggt
     4201 ttgtccgaac cgccgcacgc tgcaagcagc aaagcagtca ggacggccag gggcagatgt
     4261 ttggtcatta tcattccttg catatcgggt tggagaaagc ggccattata gccgatattg
     4321 gcaacagggc ttcagacggc attcaaaatc ccgccacact cttccgaaaa ccgccgcttc
     4381 catagctaga aacagggatt tgcggtaaga taccgccgtt cgttttccct gcttttacca
     4441 tgacaagaca tttgagagac attgaaaaaa ttatgaaaac ctccgaactg cgccaaaaat
     4501 tcctaaaatt ttttgaaacc aaaggccaca ccgtcgtccg ctcttccagc ctcgtgccgc
     4561 acgacgaccc gaccctgctg tttaccaacg cgggcatgaa ccagtttaaa gacgtattct
     4621 taggtttcga caaacgcccg tacagccgcg ccaccaccgc gcaaaaatgc gtacgcgcag
     4681 gcggcaaaca caacgacttg gaaaacgtcg gctacaccgc ccgccaccac accttctttg
     4741 aaatgatggg caacttctcc ttcggcgact acttcaaacg cgacgccatc cacttcgctt
     4801 gggaatttct gacttccccc gaatggctca acatccctaa agacaaactg ttggcgaccg
     4861 tttacgcgga agacgacgaa gcctacaaca tctggttgaa cgaaatcggt atgccgtccg
     4921 agcgcatcgt ccgcatcggc gacaacaaag gcgcgaaata cgcatccgac aacttctggc
     4981 aaatgggcga caccggccct tgcggcccct gctccgaaat tttctacgac cacggcgaag
     5041 aaatctgggg cggcattccg ggcagccccg aagaagacgg cgaccgctgg atcgaaattt
     5101 ggaactgcgt atttatgcag ttcaaccgcg acgaacaagg caatatgaac ccgcttccca
     5161 aaccttccgt cgataccggt atgggcttgg aacgcatggc cgccgtcatg cagcatgttc
     5221 acagcaacta cgaaatcgac ttgttccaag acctgctcaa agccgttgcc cgcgaaaccg
     5281 gcgcagcttt cagcatggaa gaaccaagcc taaaagtcat cgccgaccac atccgctcct
     5341 gctcattcct gattgcagac ggcgtattgc cttccaacga aggccgcggc tacgtattgc
     5401 gccgcattat ccgccgcgcc gtgcgccacg gttacaaact gggtcaaagc aaaccgttct
     5461 tccacaaact cgttgccgat ttggtcaaag agatgggcgg tgcctaccct gagttgaaag
     5521 agaaacaagc acaaatcgaa gaagcgttga aaaacgaaga aagccgtttt gcccaaacgc
     5581 tggaaactgg tatggctttg ttggaaaacg cgctggccaa aggcggcaaa acactcgacg
     5641 gcgaaatcat cttcaaactc tacgatactt acggtttccc ctacgacctg actgccgaca
     5701 tggcgcgcga actgggcatc gaactggacg aagcaggctt cgagcgcgaa atggaagccc
     5761 aacgcgcacg cgcacgcgcc gcccaaagct tcaaagccaa cgcccaactg ccttatgacg
     5821 gtcaagacac cgagtttaaa ggttatagcg aacgccaaac cgaatccaaa gtcctcgccc
     5881 tctacaaaga cggcgagcaa gtcgacgaat tgaacgaagg cgacagcggc gcagtcgtca
     5941 tcgactttac cccgttctat gcagaatccg gcggccaagt cggcgatgtc ggctatatct
     6001 tctcaggcga aaaccgcttt gaagtacgcg atacccaaaa aatcaaagcg gccgtattcg
     6061 gtcaattcgg cgtacaaact tcaggccgtc tgaaagtcgg cgacagcgtt accgccaaag
     6121 tggacgacga aatccgcaat gccaatatgc gcaaccacag cgcaacccac ttgatgcaca
     6181 aagccctgcg cgatgtattg ggcagacacg tcgaacaaaa aggctctttg gttaccgccg
     6241 aatccacccg tttcgacatt tcccatcccc aagcggtaac tgccgaagaa atcgccgaag
     6301 tcgaacgccg cgtcaacgaa gccgttttgg cgaacgttgc cgtcaacgcc gccattatga
     6361 gtatggaaga cgcacaaaaa accggcgcga tgatgctctt cggtgaaaaa tacggcgacg
     6421 aagtgcgcgt actgcaaatg ggcggtttct ctaccgaatt gtgcggcggc acacacgttt
     6481 cacgcaccgg cgacatcggc ctcttcaaaa tcatcagcga aggcggtatt gccgcaggcg
     6541 tgcgccgtat cgaagccatc accggcctga acgcactcaa atgggcgcaa gagcaagagc
     6601 gtttggtgaa agacatcatt gctgaaacca aagcccaaac cgaaaaagac gtactggcga
     6661 aaatccaagc aggcgcggca cacgccaaag cattggaaaa agaattggca cgcgccaaag
     6721 ccgaactcgc cgtccacgca ggcgcaaaac tcttggacga cgcaaaagac ttgggcgcag
     6781 ccaaactcgt tgccgcccaa atcgaagccg acgcagccgc cctgcgcgaa atcgtaaccg
     6841 acctgaccgg aaaatccgac aacgccgtga ttcttttagc ggcagtaaac gacggcaaag
     6901 tctccctgtg cgccggcgta tccaaaccgt tgaccggcaa agtgaaagca ggcgatctgg
     6961 ttaaatttgc agccgaacaa gtcggcggca aaggaggcgg ccgtcccgac ttggcgcagg
     7021 ccggcggcac ggatgccggc aaattgcccg aaatgctggt aagcgtggaa agctggcttt
     7081 gtcagaaatt aagttaaatt taaatcttaa taagccattt gagtcttgtt caaatggctt
     7141 atattttgga ttgttagaat gaatactaaa acagagttac aaaaactttt agaagaggat
     7201 atatcaactt taacagaaac actaatttgt gcagatgctc ttcctccaag atatgtacgt
     7261 agcattgcaa ctcctattgt ccgtcgatgg ttaattgaca aacaattaaa tattctcgca
     7321 aaagaaatag gtttaactat agaattgccc atccttgata caagtttggt atttgaaaaa
     7381 ttgtcaacct tagagaataa agttaatttt tatatggctg gtggagttta tttaggcgga
     7441 gaatttatta gctctatata tcattcatca caagaatttt ctggtgaacc aataatctat
     7501 gctgaaccaa atataatttt atgtcctgct gaaaaatttt taactttaaa acgagttttc
     7561 cataatggaa atatttttaa tatgaatcag ataattactt ttttatccaa taaacaagga
     7621 ggagtacatt ttgataaaaa ttacgataaa tataaaactt ggcaagttgc tatagaaaaa
     7681 gcagcaaatt ttttaaaact cggtaatcca tataatgaag ataaattatc tcttagtgaa
     7741 gaacatgata ctattttagt agttttacca ttagaaaaag gatatgaatg gaattgtctt
     7801 gagatagaag tactatccgc tgctcaatct ctagcaaata tctattgcaa caaagttcgc
     7861 ctcatagatg gtcatgtttg gaaggaataa aagaaaaagc atagttggta atttttagtt
     7921 acgtagggtg ggcttcagcc caccgttttt tcatttttga ttgttgattg gtgggctaaa
     7981 gcccacccta cggttactaa aatcccgtca ttacctcgca ggtgggaatc cggtttgttc
     8041 ggtttcggtt ttttagggac agtgccgcaa cattaaattt ccagattccc actttcgcac
     8101 aaataacagc gcaaataggg caaagataag gatatgggtt tttttctttg aatttactat
     8161 acaattcgcc cgtccccgtt atagaaaccc aagccgatga aaaccctgct ccaactccaa
     8221 accgccgcac aaaacttcgc cgcctactac aaagaccaaa ccgacgaacg ccgcgagaaa
     8281 gacaccttct agaacgaatt tttcgccatt ttcggcatcg accgcaaaaa cgtcgcccac
     8341 ttcgaatacc ccgtcaaaga ccctgccgac aacacccaat tcgtcgatat attttgggag
     8401 ggcatcttcc ttgccgaaca caaatccgcc aacaaaaacc tgaccaaggc caaagagcag
     8461 gcggagcgtt atttgcagga aatcgggcgc accaagccct ctgcgctgcc cgaatattac
     8521 gccgtcagcg attttgccca tttccacctt tatcgccgcg tacctgaaga aggcgtggaa
     8581 aaccaatggc agttcccttt ggaagcattg cccgaataca tcacgcgcgg cgttttcgac
     8641 ttcatgttcg gcatcgaagc caaagtccgc caaattcaag aagaagccga tattcaagcg
     8701 gcggcggcca tcggcaggct gcacgacgcg ctcaaagaag aaggcattta cgaagaacac
     8761 gagctgcgcc tcttcatcac gcgcctgctt ttcctctttt ttgccgacga cagcgccgtt
     8821 ttccagcgca actatctctt tcaagacttt ttagaaagct gcaaagaaac cgacacgctc
     8881 ggcgacaagc tcaaccaact ctttgaattc ctcaacacac ccgaccaaaa gcgcagcaag
     8941 acccaaagcg aaaaatttaa aggtttcgaa tacgtcaacg gcggcctgtt taaagaacgc
     9001 ctgcgcacct tcgacttcac cgccaagcag caccgcgcct taatcgactg cggcaatttc
     9061 gactggcgca a
//
LOCUS       DAWGNT010000071         9070 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.071, whole genome shotgun sequence.
ACCESSION   DAWGNT010000071 DAWGNT010000000
VERSION     DAWGNT010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9070
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.071"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(6..1262)
                     /locus_tag="WHR98_001167"
     CDS             complement(6..1262)
                     /locus_tag="WHR98_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEZ2307854.1"
                     /translation="MNAAQLDHTAKVLAEMLTFKQPADAVLSAYFREHKKLGRQDRHE
                     IAETAFAALRHYQKISTALRRPHAQPRKAALAALVLGRSTNISQIKDLLDEEEIEFLG
                     NLKARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKG
                     KRDKVLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALL
                     VGAKRGEIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNI
                     HPERISSEHDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQH
                     SILDAASKLVKPQGRLVYATCSILPEENELQVERFLSEHPEFEPVNCAELLQNLKIDL
                     DTGKYLRLDSAKHQTDGFFAAVLQRK"
     gene            complement(1610..1951)
                     /locus_tag="WHR98_001168"
     CDS             complement(1610..1951)
                     /locus_tag="WHR98_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307855.1"
                     /translation="MKNNVKNWTTKEVKQSLDKFNNILIKNTFLLQYLKKEFSASSAY
                     CLSMLPEEEDIYEILVNGNIIIDLEFNKHTNETVVINVTDVDEYLKTLTNESGRVFFT
                     LAKEIGKQKNI"
     gene            complement(2155..3012)
                     /locus_tag="WHR98_001169"
     CDS             complement(2155..3012)
                     /locus_tag="WHR98_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1853 family protein"
                     /protein_id="HEZ2307856.1"
                     /translation="MNYALDALWWKLTSQPVRDLASLLTAPPLWQSGCELGVRELLGE
                     RGFRYLLALDADPAPLTEHLTRRAPFGHRLGIYAEELLAFWFANAPHAELLAHNLTVS
                     GSDGNTQGAADFVVRLNGKPYHIELTCKYYGGGTGRLEDMRGLDPKDTLLGKAAKLTA
                     QLGLPHTSDGIRTLRQHGLPLDVKPVSIVRGIGFFPQGFNAFEPPLNPYGWRGIYIQY
                     WAEYGFERQEARYHLLDRMAYLAPARAAETETLNETEIRRIDQGLIAVLECRPDGFWH
                     EIERIMKAV"
     gene            complement(3073..3888)
                     /locus_tag="WHR98_001170"
     CDS             complement(3073..3888)
                     /locus_tag="WHR98_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEZ2307857.1"
                     /translation="MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLT
                     IVAPNLMATPMTENPPVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD
                     TTIACALTSRRREITAPLQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACN
                     RLMTINGNPDYFSLNLAQAVQVVCYEIFSQTGSPMTHLQQEDHAATHEQIKGMVAHME
                     SVMNDIGFFNRRNGERLMRRMQSLFGRANTQTEDIDILRGFFNTVSHRIHKKD"
     gene            3952..4122
                     /locus_tag="WHR98_001171"
     CDS             3952..4122
                     /locus_tag="WHR98_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307858.1"
                     /translation="MPSEMFFNNVGNLTLRLKQTRVRRYFTRFGRVYPNQINSDFAAP
                     KDCASELAVCHP"
     gene            4132..4917
                     /locus_tag="WHR98_001172"
     CDS             4132..4917
                     /locus_tag="WHR98_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEZ2307859.1"
                     /translation="MNPFLNTAFKAARRAGQMMIRAAGNLDVVKVDSKAFNDFVSDVD
                     RNSEIILVEALKEAYPHHKITCEEGGFHGKAAAEYEWIIDPLDGTTNFLHGHPQYAIS
                     MALLHKGVLQEALVYAPERNDVYMASRGKGALLNDRRIRVSNRIELNRCLIGTGFPVV
                     DQSMMDKYLAILKDFLAKTAGGRREGAASLDLCAVATGRFDGFFEFNLKPWDIAAGAL
                     IVQEAGGIVTDMTGEDAWLESGDIVAANPKVLAQMLKIISAHV"
     gene            5186..7302
                     /locus_tag="WHR98_001173"
                     /pseudo
     CDS             5186..7302
                     /locus_tag="WHR98_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219143.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
     gene            7426..8976
                     /locus_tag="WHR98_001174"
     CDS             7426..8976
                     /locus_tag="WHR98_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HEZ2307860.1"
                     /translation="MKKPLISVAAALLGVALGTPYYLGVKAEESLTQQQKILQETGFL
                     TVESHQYERGWFTSMETTVIRLKPELLNNARKYLPDNLKTVLEQPVTLVNHITHGPFA
                     GGFGTQAHIETEFKYAPETEKVLERFFGKQAPVSLANTVYFNGSGKMEVSVPAFDYEE
                     LSGIRLHWEGLTGKTVYQKGFKSYRNSYDAPLFKIKLADKGDAAFEKAHFDSETSDGI
                     NPLALGSSNLTLEKFSLEWKEGVDYNVKLNELVNLVTDLQIGAFINPNGSIAPSKIEV
                     GKLAFSTKTGESGSFINSEGQFRFDTLVYGNEKYGPLDIHIAAEHLDASALTVLKRKF
                     AQISAKKMTEEQIRNDLIAAVKGEASGLFTNNPVLDIKTFRFTQPSGKIDVGGKIMFK
                     DMKKEDLNQLGLMLKKTEADIRMSIPQKMLEDLAVSQAGNIFSVNAEDEAEGRASLDD
                     INETLRLMVDSTVQSMAREKYLTLNGDQIDTAISLKNNQLKLNGKTLQNEPEPDFDEG
                     GMVSEPQQ"
BASE COUNT         2267 a         2166 c         2390 g         2247 t
ORIGIN      
        1 ccggtttatt tgcgttgcaa tacggcggcg aagaagccgt cggtttggtg ctttgccgaa
       61 tcgaggcgca ggtattttcc ggtatccaaa tcaatcttca ggttttgcag cagttcggcg
      121 cagttgacgg gttcaaattc gggatgttcg gacaggaaac gttcgacttg cagctcgttt
      181 tcttcgggca ggatgctgca agtggcgtaa accaagcggc cttgcggttt taccagtttg
      241 gaggcagcat cgaggatgct gtgttgctgt tccaaaaggt tggccacggt ctcggcagat
      301 tggcggtatt tgaggtcggg attgcggcgc agtgtgccta agccggagca gggcgcgtcc
      361 accaacacac ggtcggcttt gcctgccagt cgggcgatac ggctgtcgtg ttcgctgctg
      421 atgcgttcgg ggtggatatt ggtcagtccg gcgcgggtca tacgcggttt gaggttggca
      481 aggcgttttt cggcgatgtc gaaggcgtag attctgcctt tattggccat ttgcgcaccg
      541 acagccaagg ttttgccgcc ggcaccggca cagaaatcga caatgatttc gccgcgtttt
      601 gcgcccacca ataaagcaag cagctggctg ccttcgtctt gaacttccag cgtaccgtcc
      661 aaaaacagct cgtgtttgtt aagcgcgatt ttgtttttca ggcggatgcc ccaaggcgaa
      721 taaggcgttg cctctgcatc ggcactttcg gcttgcaaca atggcagcac tttatcgcgt
      781 ttgcctttca aggtattgac gcgtatatcg agcggcgcag cttggttgat gctgcggccg
      841 aaggcgagga tttcttcttc gcgccaatgc tgctgcagct gttctaccag ccattgcggc
      901 aattctgcgg cggtattcag gccgtctgaa aactcggttt tacgggcttt caaattgccg
      961 agaaactcta tttcttcttc atcaagcagg tctttgattt ggctgatgtt ggtgcttctg
     1021 ccgagaacca gtgcggcgag tgcggctttg cgcggctgcg cgtgcggacg gcgcagggcg
     1081 gtactgattt tttgatagtg gcgcagcgcg gcaaaggcgg tttcggcgat ttcgtggcgg
     1141 tcttggcggc cgagcttttt atgttcgcgg aaataggcgg agaggacggc atcggcaggc
     1201 tgtttgaaag tcagcatttc agccaaaact ttggcggtat ggtcgagttg tgcggcgttc
     1261 ataatgtaat gggttctctt actgtgggtt attcataatc aatctaacgt ccttaaaata
     1321 acaatagcat ctttatcatt acttagtatt ctatccgcaa taagaaagat gtgttaaaag
     1381 tgcgcaatcg ggatttgtct aaatttctcc gttaactaca aaggcagcct gaaaaaagtt
     1441 ctattttcaa gtcgcttgaa cagcatccga tataatcaca tcagcgattt cattttgtaa
     1501 tcactcccca aaacatgagg aaaaaaacaa aatttatttt cttcgttcag tatatctatc
     1561 ctaaatatgc catcactcca ttgagttttt aatttgtatt tcgctcttgt taaatgtttt
     1621 tctgtttgcc gatttctttt gctaatgtaa aaaatactct accactctca ttggttaaag
     1681 ttttcaagta ttcatcaaca tcagtaacat taataacaac tgtttcattt gtatgtttat
     1741 taaattctaa atcaataata atattcccat taaccaatat ttcatatata tcttcttctt
     1801 cagggagcat agacaaacaa taagcacttg aagctgaaaa ctcttttttc agatactgaa
     1861 gaagaaaagt atttttaatt aaaatattat taaatttatc taatgattgc ttgacttctt
     1921 tagttgtcca atttttaaca ttattcttca ttgtattcta cctggggtcg tagttattaa
     1981 attaccatac ttatttgttt ggatcgtcat aatattagtt ggcatgttgt tgttatattt
     2041 atcatatcca atatccttat taactcggat gactctttca taaattgtat gggaaatgag
     2101 atttccatca ctaagcctct caatagatat acgcgttaat gttgggaaag ggtttcagac
     2161 ggccttcata atgcgttcga tttcgtgcca aaagccgtcc ggccgacatt ccaaaacggc
     2221 aatcaagcct tggtcgatac ggcggatttc ggtttcgttc aatgtttcgg tttcggcggc
     2281 acgcgcaggt gcgaggtagg ccatacggtc gagcaggtgg tagcgtgctt cttggcgttc
     2341 aaacccatat tccgcccaat attgaatata gataccgcgc cagccgtatg gattaagcgg
     2401 cggctcaaag gcgttgaaac cttgcggaaa aaatccgatg ccgcgcacga tggaaacggg
     2461 ttttacgtca agcggcagac cgtgttgccg caaggttcgg atgccgtctg aagtgtgcgg
     2521 cagaccgagt tgggcggtca gtttggcggc ttttcccaac agcgtgtctt tggggtcgag
     2581 tccgcgcatg tcttcgagcc tgcccgtgcc gccgccgtaa tatttgcagg tcagctcgat
     2641 atggtagggt ttgccgttaa gccttaccac aaaatccgcc gcgccttgcg tattgccgtc
     2701 cgaaccggaa accgtgaggt tgtgcgcgag cagttcggcg tgtggcgcgt tggcaaacca
     2761 aaatgccagc agttcttcgg cgtaaatgcc gaggcggtgt ccgaacgggg cgcgtcgggt
     2821 gaggtgttcc gtcagcggcg cgggatcggc atccaatgcc aaaagatagc ggaaaccgcg
     2881 ttcccccaat agttcgcgca cgcccaattc gcaaccgctt tgccacaaag gcggcgcagt
     2941 cagcagcgag gcgaggtcgc ggacgggttg gctggtgagc ttccaccata atgcgtctag
     3001 ggcgtaattc atgcttatcc gaatatcagt catgccgtct gaaaagctgg aaatgttttc
     3061 agacggcctt aatcagtctt ttttatggat acgatggctg acggtattga aaaaaccgcg
     3121 caggatatcg atgtcttcgg tttgcgtgtt ggcgcgtccg aacaggctct gcatacggcg
     3181 catcagacgc tcgccgttgc ggcggttgaa aaagccgatg tcgttcatca cgctttccat
     3241 gtgggcgacc atgcctttga tttgctcgtg ggtcgcagcg tggtcttctt gttgaagatg
     3301 ggtcatgggc gaaccggttt ggctgaagat ttcgtagcac acgacctgca cggcttgggc
     3361 gaggttgagc gagaaatagt cgggattgcc gttgatggtc atcagtcggt tgcaggcttg
     3421 gacttcttcg atgctcaagc cgaaagtctc gttgccgaaa accagtgcca ctttctcgcc
     3481 tcggtttgcg gtctgcagta attcggatac caaatcgcgc ggggtttgca gcggcgcagt
     3541 aatttcgcgg cggcggctgg tcagggcgca ggcgatggtg gtgtcggcaa gggcttcgtc
     3601 caaagaagcg gcaatggtgg cattttccaa aacgtctgcc gcgccggaag cgaggatgaa
     3661 gctttcttcc ggtaatttaa acgattgagg atgctccggg tcaaacacgg gcgggttttc
     3721 cgtcatcggc gttgccatca gattgggggc gacgatggtc agtttgtgca gacccattgt
     3781 tttcatcgcg cgcgcggcag agccgatatt ggcgggatgg ctggtgcgtg tgaggatgat
     3841 gcggatgttg tccagataag cgggcagggc gggtttgaga gtagtcatgt tcggttttcg
     3901 gtcggaatgg aatagggtat aatacgccgt ctttttcgtt cggacggtca aatgccgtct
     3961 gaaatgttct ttaacaacgt cggaaattta acgttgcgcc tgaagcagac acgcgtcagg
     4021 cggtatttta cccgatttgg cagggtttac cccaaccaaa taaactccga ttttgccgct
     4081 ccgaaggact gcgcgtccga actggcggta tgccaccctt aaggaaatct gatgaatccg
     4141 tttttgaata cagcctttaa agccgcccgc cgtgccggtc agatgatgat acgcgccgca
     4201 ggcaacctcg atgtcgtcaa agtagacagc aaagccttca acgattttgt ttccgatgtt
     4261 gaccgcaatt ccgaaatcat cctggttgag gctttgaaag aagcctatcc gcaccacaaa
     4321 atcacttgcg aagaaggcgg cttccacggc aaagccgcag ccgagtacga atggattatc
     4381 gatccgcttg acggcacgac caatttcctt cacggacatc cccaatacgc catctctatg
     4441 gcactcctgc acaaaggcgt gttgcaggaa gctttggtgt acgcccccga acgcaacgac
     4501 gtatatatgg cttcgcgcgg caaaggcgcg ttgctcaacg accgccgcat ccgcgtttct
     4561 aaccgcatcg aattgaaccg ctgcctgatc ggtaccggct tccccgttgt cgatcaaagc
     4621 atgatggaca agtatctggc gattttgaaa gactttttgg caaaaaccgc cggcggccgt
     4681 cgtgaaggcg cggcttcttt ggatttgtgt gctgtggcga ctggtcgttt tgacggcttt
     4741 ttcgagttta acctcaaacc gtgggacatt gccgcaggtg cattgattgt tcaggaagcg
     4801 ggcggtatcg taaccgatat gacgggtgag gacgcttggt tggaaagcgg cgatattgtc
     4861 gccgccaatc ccaaagtatt ggcgcagatg ctgaaaatca tttccgcaca cgtttaaatt
     4921 tcagcccttt cccgaaaata tgggaaaacg ggcgggtatg ccgtctgaag tatcgcgccg
     4981 atatttcaga cggcattttt attggcaacg cggcaggacg gcggaaacgg tcaaatgccc
     5041 caaactgccg aggatggaaa cccatatctg attaaacgga gaaccctgtg cgatttgttt
     5101 atagtggatt aacaaaaacc agtacggtgt tgcctcgcct tagctcaaag agaacgattc
     5161 tctaaggtgc tgaagcacca agtgaatggg caaagccaac gcctttaccg caccgattac
     5221 cgtcgtcaat tacgacgaac aagccctcaa taacaccgaa gcgcgtactt tggtggatgc
     5281 cgtagcgaaa aaagacgctt ccgtttggca gttcggcggc gaaagcaaca cgctgaccgg
     5341 actgtatttc agaggttatc agcttgatgc gcgccaattc agcgtcaacg gtttggcagg
     5401 tatgtacggc acgcaaggca cggcaagcgt gcaagttgga tcggcacaac tgattaaagg
     5461 cgcatccact gccgtaaacg gcatggaccc tgaaggtgcg gtatccggtt ccgtcaatat
     5521 cgaaaccaaa aaagccgccg atgaaggcaa ccgcaaaatc ggtttgggcc ggtttagcaa
     5581 caaccgcgcc caaggtacgt tcgacttggg tcaacgcttc ggcgaaaaca aagcattcgg
     5641 cgtacgcgcc aacggcaaac tgcgccacgg cgacactccg cgccacggtt acagcgaaga
     5701 caacaaagaa tttgcggtaa atgccgacta tcgcggcgaa acactgcgcg tagcgttcga
     5761 ttccatctac gcaaaaccaa cggcggtcgc gcgcgtatgc aggacattca aaacgccggc
     5821 ggacgcttgt ttggcgcgcc cgatggtaaa accaacctgc tgccttcttg gaactggcaa
     5881 aataccgccg gccaaaccaa tatgcttacg tttgaatggg atgcgtttga taatgcacag
     5941 attacaggcg gtatcggcta caacaaggca cgctattacg gcacgctgat ttccccgacc
     6001 gtatgtttga atgctaccag cacttgtacc gatatgcaaa acacaaacgc cagcggcaaa
     6061 gtaacggcac gcaactatga ctacaatacc ggtactgcgc gcctgaccga ccaatatttc
     6121 cgcacattga gtatgaacct gaccgcacgc ggcgaatttg aaaccagccc ggtaacacat
     6181 aactggagta cggctttcga ccgcgttatc cgccagcgga aaaccattcg cggaacggca
     6241 gccggcgctg gcaaggtaga agtgaaggca aacgaaaata ttgcgaatca attggcatcg
     6301 ttcaaagccg actatcccaa ttcttgggag aactctgcca acttggatgc caatatcaaa
     6361 gtcaacagcc tggctttgtc cgacaccttg ggcttcgtgg ataacaaata ccgcctgact
     6421 ttgggcggac gtttccaagc ggttgaatac accaataaga aaaaatcaca gagcggcgat
     6481 gccaaacgct tcagcccgat gctgatggcg gcgtgggtgc cgcaacctga tttggttgtg
     6541 tacggcaact atatggaaga cttggagcct gccgatatca aaaccgatga ttccggcgaa
     6601 acgacaatgg cgaaaccgcg tgtcagccgt cagtttgaag tgggcgtgcg taaaaactgg
     6661 ggcaatttcg taaccacgtt aaacgcgttc caaatcaaac gcccgggcta ctggcgcggt
     6721 catacaacta ccaagacaac aaaaggggta acaacaacgc tgacctatgg caacaattcc
     6781 gatttcgccc gctataaggc gcaaggcggc gcggccggcg acgagcaagg tatggaacgc
     6841 aatcgcggta ttgagttcaa tgcctatgct aacctgttaa acaaaaccct gcgtccgact
     6901 ttgggcctga tgtatctgca atcgaccgtg aaagagtatc caaattcacg cgatatgctg
     6961 gttaacggcg tacaagtcgc caatccgcgc gtaattgcca aggcaggttt ggaatgggat
     7021 acaccgtttg ccaaaggctt gactttaaac agcaatgttt cgtatttcgg caagtcttac
     7081 caagacacgc aaaaacaata cgctttcccg tcttacactt tggttgacgt aggcgcgcgc
     7141 tacaaaacca agctcggcaa aaatacgttg accgtcagca gctcggtgga aaacctgttc
     7201 aacaaaaact actggcaggt acagcgcggc caatacgacc gcagcttcgc cgtcgtcggt
     7261 atgccgcgta cttactggtt gaaagcggaa ttggatttct gatttctccg catccggaaa
     7321 atgccgtccg aacaggtttc agacggcatt tcttttaaag aaatatggcg ggatatgctt
     7381 aaataatgct attctagcgt ctttgaaacc tgcttgtttg aagtgatgaa aaaacctttg
     7441 atttcggttg cggcagcatt gctcggcgtt gctttgggta caccttatta tttgggtgtc
     7501 aaagccgaag aaagcctgac gcagcagcaa aaaatattgc aggaaacggg cttcttgacc
     7561 gtcgaatcgc accaatatga gcgcggctgg tttacctcta tggaaacgac ggtcatccgt
     7621 ctgaaacccg agttgctgaa taatgcccga aaatacctgc cggataacct gaaaacagtg
     7681 ttggaacagc cggttacgct ggttaaccat atcacgcacg gcccttttgc cggcggattt
     7741 ggcacgcagg cgcacattga aaccgagttc aaatacgcgc ctgaaacgga aaaagttttg
     7801 gaacgctttt ttgggaaaca agctccggtt tcccttgcca ataccgttta ttttaacggc
     7861 agcggtaaaa tggaagtcag tgttcccgcc ttcgattatg aagagctgtc gggcatcagg
     7921 ctgcattggg aaggattgac gggaaaaacg gtttatcaaa aaggtttcaa aagctaccgc
     7981 aacagctatg atgcgccctt gttcaaaatc aagctggcag acaaaggcga tgccgcgttt
     8041 gaaaaagcgc atttcgattc ggaaacttca gacggtatca atccgcttgc tttgggcagc
     8101 agcaatctga ccttggaaaa attctcccta gaatggaaag agggtgtcga ttacaacgtc
     8161 aagttaaacg aactggtcaa tcttgttacc gatttgcaga ttggcgcgtt tatcaatccc
     8221 aacggcagca tcgcaccttc caaaatcgaa gtcggcaaac tggctttttc aaccaagacc
     8281 ggggaatcag gctcatttat caacagtgaa gggcagttcc gttttgacac gctggtgtac
     8341 ggcaatgaaa aatacggccc gctggacatc catatcgccg ccgaacatct cgatgcttct
     8401 gccttaaccg tattgaaacg taagtttgca caaatttccg ccaaaaaaat gaccgaggaa
     8461 caaatccgca atgatttgat tgccgccgtc aaaggcgagg cttccggact gttcaccaac
     8521 aatcccgtat tggacattaa aacttttcgt ttcacacagc cgtcgggaaa aatcgatgtg
     8581 ggtggaaaaa tcatgtttaa agacatgaag aaggaagatt tgaaccaatt gggtttgatg
     8641 ctgaagaaaa ccgaagccga catcagaatg agtattcccc aaaaaatgct ggaagacttg
     8701 gcggtcagtc aggcaggcaa tattttcagc gtcaatgccg aagatgaggc ggaaggcagg
     8761 gcaagtcttg acgacatcaa cgagaccttg cgcctgatgg tggacagtac ggttcagagt
     8821 atggcaaggg aaaaatatct gactttgaac ggcgaccaga ttgatactgc catttctctg
     8881 aaaaacaatc agttgaaatt gaacggtaaa acgttgcaaa acgaaccgga gccggatttt
     8941 gatgaaggcg gtatggtttc agagccgcag cagtaatggg tcaaatgccg tctgaaatgt
     9001 tcaggcggca ttttgttgta ttggaaactg ccgttttcaa ccattccttt agataagccg
     9061 tgtcggattc
//
LOCUS       DAWGNT010000072         9053 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.072, whole genome shotgun sequence.
ACCESSION   DAWGNT010000072 DAWGNT010000000
VERSION     DAWGNT010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 9053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9053
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.072"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(58..1851)
                     /locus_tag="WHR98_001175"
     CDS             complement(58..1851)
                     /locus_tag="WHR98_001175"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEZ2307861.1"
                     /translation="MQLDIDRLVAYFGGVNALAEALKQHDPENAATTAAIYKWRTRGS
                     LPLAQLQKLTALAEAQGRPLDLNAFLQKNESLERTEMTQANRVIIFDTTLRDGEQSPG
                     AAMTKEEKIRVARQLEKLGVDIIEAGFAAASPGDFEAVNAIAKTITKSTVCSLSRAIE
                     RDIRQAGEAVAPAPNKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDV
                     EFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNG
                     GKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEEIVMALKVRH
                     DLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQDGVLKHRET
                     YEIMSAESVGWATNRLSLGKLSGRNAFKTKLADLGIELESEEALNAAFARFKELADKK
                     REIFDEDLHALVSDEMGSMNAESYKFISQKISTETGEEPRADIVFSIKGEEKRASATG
                     SGPVDAIFKAIESVAQSGAALQIYSVNAVTQGTESQGETSVRLARGNRVVNGQGADTD
                     VLVATAKAYLSALSKLEFGSAKPKAQGSGTI"
     gene            2096..3205
                     /gene="proB"
                     /locus_tag="WHR98_001176"
     CDS             2096..3205
                     /gene="proB"
                     /locus_tag="WHR98_001176"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEZ2307862.1"
                     /translation="MKYKRIVFKVGTSSITHSDGSLSRGKIQTITCQLAALHHAGHEL
                     VLVSSGAVAAGFGALGFKKRPVKIADKQASAAVGQGLLMEEYTANLSSDGIVSAQILL
                     SRADFADKRRYQNAGGALSVLLQRRAVPIINENDTVSVEELKIGDNDTLSAQVAAMIQ
                     ADLLVLLTDIDGLYTGNPNSNPDAVRLDKIEHINHEIIEMAGGSGSANGTGGMLTKIK
                     AATIATESGVPVYICSSLKPDALAEAADNQADGSFFVPRAKGLRTQKQWLAFYSESRG
                     GVYVDEGAEHALSEQGKSLLMSGIAGIEGHFSRMDTVTVYSKATKQPLGKGRVLFGSA
                     AAEDLLKSRKAKGVFIHRDDWISITPEIRLLLTEF"
     gene            3218..4480
                     /locus_tag="WHR98_001177"
     CDS             3218..4480
                     /locus_tag="WHR98_001177"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEZ2307863.1"
                     /translation="MSNTQKQLALAKAAKKSVNTADTEEKNRALLAMADSLEAAAADI
                     LAANRQDLEAAAGNIPESMTDRLLLDEKRIGAMADGIRAVAALPDPVGEILETSTLPN
                     GLEIVKKRVAMGVIGIIYESRPNVTSDAAALALKSGSAVVLRSGKDAFQSARAIVAAL
                     KTGLAQTRIDPDALQLIEDTGRESSYEMMRAKDYLDLLIPRGGAGLIRAVVENAVVPV
                     IETGTGIVHIYIDKDADWDKALRIVYNAKTSRPSVCNSMEVLLVHEDIAADFLPKLER
                     LLVRNRIEAGLPPVRFRLDPQAARHIGGEAAGADNFDTEFLDYILAVKTVASVEEAVG
                     HIETHGTHHSDGIVTENRHAADYFTTHIDSAAVYVNASTRFTDGGEFGLGCEMGISTQ
                     KLHARGPMGLKELTSYKYIVQGTGQVRE"
     gene            complement(4705..7737)
                     /locus_tag="WHR98_001178"
     CDS             complement(4705..7737)
                     /locus_tag="WHR98_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEZ2307864.1"
                     /translation="MFWIVLIVILLLALVGLFFVRAQSEREWMREVSAWQEKKGEKQA
                     ELPEIKDGMPDFPELALMLFHAVKMAVYWLFVGVVRFCRNYLAHESEPDRLVPPASAN
                     RADVPNASDGYSDSGNGTEEAETEEAEAAEEEAADTEDIATAVIDNRRIPFDRSIAEG
                     LMPSESEISPVRPVFKEITLEEATRALNSAALRETKKRYIDAFEKNETAVPKVRVSDT
                     PMEGLQIIGLDDPVLQRTYSRMFDADKEAFSESADYGFEPYFEKQHPSAFSAVKAENA
                     RNAPFRRHAGQAEAKSPDVSQGQSVSDGTAVRDARRRVSVNLKEPNKATVSAEARISR
                     LIPESRTVVGKRDVEMPSETENVFTETVSSVGYGGPVYDETADIHIEEPAAPDAWVVE
                     PPEVPKVPMTAIDIPPPPPVSEIYNRTYEPPSGFEQAQRSRIAETDHLADDVLNGGWQ
                     EETAAIADDGSEGAAERSNGQYLSETEAFGHDSQAICPFEDVPSERPSCRVSDTEADE
                     GAFQSEETDAVYEHLPTTDLLLPPLFNPEATQTEEELLENSITIEEKLAEFKVKVKVV
                     DSYSGPVITRYEIEPDVGVRGNSVLNLEKDLARSLGVASIRVVETIPGKTCMGLELPN
                     PKRQMIRLSEIFNSPEFAESKSKLTLALGQDITGQPVVTDLGKAPHLLVAGTTGSGKS
                     VGVNAMILSMLFKAAPEDVRMIMIDPKMLELSIYEGIPHLLAPVVTDMKLAANALNWC
                     VNEMEKRYRLMSFMGVRNLAGFNQKIAEAAARGEKIGNPFSLTPDNPEPLEKLPFIVV
                     VVDEFADLMMTAGKKIEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRI
                     AFQVSSKIDSRTILDQMGAENLLGQGDMLFLPPGTAYPQRVHGAFASDEEVHRVVEYL
                     KQFGEPDYVDDILSGGGSEELPGIGRSGDGETDPMYDEAVSVVLKTRKASISGVQRAL
                     RIGYNRAARLIDQMEAEGIVSAPEHNGNRTILVPLDNV"
     gene            7902..8582
                     /locus_tag="WHR98_001179"
     CDS             7902..8582
                     /locus_tag="WHR98_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HEZ2307865.1"
                     /translation="MIFQTVWFSDMVLSVSWIVLILILAASAPSAFRSLARYRSALPL
                     CTVIFSAAWCLNASAGGGQLAQMNYHLLAVNLVALMVGTSAALWLAALLMLPYCLLFA
                     DSAGAYPPNALVLILPALVVNRLSRMLVNRLPPNIFIFIFVNGFLASAAGILLTGLVL
                     TGILDAANAFPSEILWTTALPVFILLAWAEAFLSGISTAIFVALKPHWINTFDDNRYL
                     KSDRGIWR"
     gene            8611..8970
                     /locus_tag="WHR98_001180"
     CDS             8611..8970
                     /locus_tag="WHR98_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HEZ2307866.1"
                     /translation="MLSNIIPLSIGAALGATARWLLNLAVPAAMSPATGNLFANWTGA
                     LLIGIFAETVNHPQWKLLLITGFLGSLTTLSGFSLETVTLLQLNRPASALSNIFLHTV
                     GSLLLTWLGLKIGAAVK"
BASE COUNT         1961 a         2558 c         2404 g         2130 t
ORIGIN      
        1 gccgcaatgc cgtctgaagc ctttttatgc ttcagacggc atcgtctgtt ttcacgctca
       61 aatcgtaccg ctgccttgcg ctttcggttt ggcagaacca aattccagtt tgcttaaggc
      121 agagaggtag gctttggcag tggcgaccaa aacgtcggta tccgcaccct gaccgttgac
      181 gacgcggttg ccgcgcgcca gacggacgct ggtttcgccc tggctttccg taccttgcgt
      241 gacggcgttg acggaataaa tctgcaaagc cgcgccgctt tgcgccacgc tttcaatcgc
      301 tttgaaaatc gcatccacgg ggccggagcc tgtggcggaa gcgcgttttt cttcgccttt
      361 gatgctgaac acgatgtcgg cgcgcggctc ttcgccggtt tcggtgctga ttttttggga
      421 gatgaatttg tagctctcgg cattcatgct gcccatttcg tcggatacca gtgcgtgcag
      481 gtcttcatcg aagatttcgc gttttttgtc ggcgagttct ttgaagcggg caaacgcggc
      541 gttcagtgcc tcttcgcttt ccaactcgat gcccaaatcc gccagcttgg ttttgaaggc
      601 gttgcggccg gacaatttgc ccaagctcaa acggtttgtt gcccagccga ccgattcggc
      661 ggacataatc tcgtaagttt cgcggtgttt cagcacccca tcctgatgga tgcccgattc
      721 atgcgaaaag gcattggcac cgacaatggc tttattgggc tgcacgggat agcccgtaat
      781 agtggacacc agtttggacg aaggcacgat ttgcgtggta tcgatgccgg tttccaagcc
      841 gaacaagtcg tggcgcactt tcaacgccat cacgatttct tcaaccgaag cattgcctgc
      901 acgttcgccc aagccgttga cagtacattc cacctgacgc gcgccgcctt ttaatgcggc
      961 aagcgaattg gcaaccgcca agcccaaatc gttgtggcag tgtgccgacc aaacgacttt
     1021 gccgccgttg ggcgttttgg caatcagttc gcggaaaaat tcttcggttt tatacgggat
     1081 ggaatagccg acggtatcgg gaatattgat ggtggtcgcg cccgcttcaa tcaccgcgcc
     1141 gcagatttcg gcaaggaaat cgatttccga acgcaacgcg tcttcgcagg aaaattccac
     1201 atcgtcggtg tattcacgag cgattttcac cgctttgacc gccgcctcaa tcacctgctt
     1261 cggcttcatc ttcaatttgt actccatatg gatggggctg gtggcgatga aggtgtggat
     1321 gcgtttgttc ggcgcgggcg caacggcctc acccgcctga cggatgtccc gctcgatggc
     1381 gcgggacaat gaacagaccg ttgatttggt aatggttttc gcaatcgcat tgaccgcctc
     1441 gaaatcgccc gggctggcag cggcaaaacc cgcttcgatg atgtccacac ccaatttttc
     1501 cagctggcgg gcgacgcgga ttttttcctc tttggtcata gcggcgccgg gcgactgctc
     1561 gccgtcgcgc agggtggtgt cgaaaatgat aacgcggttg gcctgtgtca tttctgttct
     1621 ctccagagat tcgttttttt gtaaaaaagc attcaaatcc agcggcctgc cttgcgcttc
     1681 cgccaacgcg gtcagctttt gcagttgcgc cagaggcagc gagccgcgcg tgcgccattt
     1741 atagatggcg gcggtcgtcg cggcattttc gggatcgtgc tgtttcaacg cttcggcaag
     1801 cgcgttcacg ccgccgaaat aagcaaccaa gcggtctata tctaattgca tggtagtcct
     1861 tgtctaaaat aaatcagcct acagcagaaa tatggacagg attatacgca ttttggacaa
     1921 aacggcaata taaatttgaa aaatctcaat aagccgccat agattttatt aattttatac
     1981 attttgtcca ttttattgca gacgcggcgt gattgttgac aattgcggca gaacagggca
     2041 aattcggcgg cacaaggtgg caacgagaca ggacaaacca acaaggacgg aaacaatgaa
     2101 atacaaaaga atcgtattta aagtcggcac atcttcgatt acccattcgg acggcagtct
     2161 ctcgcgcggc aaaatccaaa ccatcacctg ccagcttgcc gcattgcatc atgcgggaca
     2221 cgagctggtc ttggtgtctt ccggcgcggt tgcggcaggg ttcggtgcgc tgggtttcaa
     2281 aaaacgtccg gtcaaaatcg ccgacaaaca ggcttccgcc gccgtcgggc aggggctgct
     2341 gatggaagaa tatacggcaa acctgtcttc agacggcatc gtgtccgcgc aaatcctgct
     2401 cagccgcgcc gactttgccg acaaacgccg ctaccaaaat gccggcggcg cactttccgt
     2461 gctgctgcaa cgccgcgccg tccccatcat caatgaaaac gatacggttt cggttgagga
     2521 attgaaaatc ggcgacaacg acacattgag tgcgcaagtg gcggcgatga tacaggcaga
     2581 cctcttggtg ctgctgaccg acatagacgg tctttacacc ggcaacccga acagcaatcc
     2641 cgatgccgta cggctggaca aaatcgaaca catcaaccat gaaatcatcg aaatggcggg
     2701 cggctcgggt tcggcaaacg gcacaggcgg tatgctgact aaaatcaaag cggcgacgat
     2761 tgcgaccgag tccggcgtac cggtctatat ctgttcctcg ctcaaacccg atgcacttgc
     2821 cgaagcggca gataatcagg cggacggctc gtttttcgtc ccccgtgcca aaggtttgcg
     2881 gacgcagaag caatggctgg cgttctattc cgaaagcagg ggcggcgttt atgtggacga
     2941 aggtgcggaa cacgctttgt ccgaacaggg aaaaagcctg ctgatgtcgg gcattgccgg
     3001 aatcgaaggg catttttccc gtatggacac cgtaaccgtg tacagcaagg caaccaaaca
     3061 gcccctgggc aaagggcgcg tcctgttcgg ttctgccgcc gccgaagacc tgctcaaatc
     3121 gcgtaaggcg aaaggcgtgt tcatccatcg ggacgactgg atttccatca cgcccgaaat
     3181 acgcctgctt ctgaccgaat tttagaaaag gaaacccatg tcaaacacac aaaaacagct
     3241 tgcccttgcc aaagcggcaa aaaaatccgt caacacggcg gatacggaag aaaaaaaccg
     3301 cgcgctgctt gctatggcgg acagcttgga agcggcggcg gcagatattt tggcggcaaa
     3361 ccgtcaagac ttggaagccg cggcaggcaa cattcccgaa agcatgaccg accgcctttt
     3421 gttggacgaa aaacgcattg gcgcgatggc ggacggcatc agggcggttg ccgcgctgcc
     3481 cgaccccgtg ggcgaaatac tagaaacctc gactttgccc aacggcttgg aaatcgtcaa
     3541 aaagcgcgtg gcgatgggcg ttatcggcat tatttacgaa agccgcccga acgttacttc
     3601 cgatgcggcg gctttggcac tgaaaagcgg cagcgcggtc gtactccgca gcggcaaaga
     3661 tgcattccaa tccgcacgcg ccatcgttgc cgccctgaaa acggggttgg cacaaacccg
     3721 catcgacccc gacgcgctcc agttgattga agacaccggg cgcgaaagca gttacgaaat
     3781 gatgagggcg aaagattatc tagacctgct gattccgcgc ggcggggcgg ggctgatacg
     3841 ggcggtggtt gaaaatgccg tcgtgccggt cattgaaacg ggaacgggca tcgtccacat
     3901 ttatatcgac aaggacgcgg attgggacaa ggcgctccgt atcgtgtaca acgccaaaac
     3961 cagccgcccg tccgtgtgca actcgatgga agtgctgctg gtgcatgaag acattgctgc
     4021 cgacttcctg cccaagctcg aacggctgtt ggttcgcaac cgtatagaag ccggactgcc
     4081 gcccgtccgc ttccgtttgg atccgcaggc ggcgcggcat atcggcggcg aagcggcggg
     4141 tgcagacaat ttcgataccg agtttttaga ctacatcctc gccgtgaaaa ccgtcgcttc
     4201 ggtcgaagag gcggtcgggc acatcgaaac ccacggcacg caccattcag acggcatcgt
     4261 taccgaaaac cgccacgctg cggactattt cacgacccat atcgattctg ccgccgtgta
     4321 tgtcaacgcg tccacgcgct ttaccgacgg tggcgaattc ggcttgggtt gcgaaatggg
     4381 catctccacg caaaaactcc acgcgcgcgg ccctatgggt ttgaaagagc tgacaagtta
     4441 caaatacatc gtacaaggca cgggacaggt tagggaataa tccgaattca aacgtctgat
     4501 atagtggatt aactttaaac cgatacggca ttgcctcgcc ttagctcaaa gagaacgatt
     4561 ctctaaggtg ctgaagcacc aagtaaatcg gtttcgtact atttgtactg tctgcggctt
     4621 cgtcgccttg tcctgatttt tgttaatcca ctataaaaat gccgtctgaa acagtcttca
     4681 gacggcattt ccatttgcaa aaaatcaaac attgtccaag gggacgagaa tcgtacggtt
     4741 gccgttgtgt tccggtgcgg acacaatgcc ttccgcctcc atctggtcaa tcagacgcgc
     4801 ggcacggttg tagccgatac gcaaggcgcg ctgtacgccc gaaatactgg ctttgcgcgt
     4861 tttcaggaca acggatacgg cttcgtcgta catcggatcg gtttcgccgt cgccgctgcg
     4921 cccgatgccg ggcagctctt cgctgccgcc gccgctcaaa atatcgtcaa catagtccgg
     4981 ctcgccaaac tgtttcaaat attcgaccac gcggtgcacc tcttcatccg aggcaaatgc
     5041 gccgtgaacg cgctgcggat aggcagtacc cggcggcagg aacagcatat cgccctgacc
     5101 gagcaggttt tccgcgccca tttggtcgag aatcgtgcgg ctgtcgattt tgctggacac
     5161 ttggaacgcg atacgcgtcg ggatgttcgc cttaatcaga cccgtgatga catcgacgct
     5221 ggggcgttgt gtggcaagga taagatggat gcctgccgcg cgggcttttt gggcgaggcg
     5281 ggcaatcagt tcttcgattt tcttgcctgc cgtcatcatc aggtcggcaa actcatcaac
     5341 cacgaccacg ataaacggca atttttccaa aggttcggga ttgtcgggcg tgaggctgaa
     5401 cgggttgccg attttctccc cccttgctgc ggcttcggcg attttttgat tgaaacccgc
     5461 aagattacgc acgcccataa agctcatcag gcggtagcgt ttttccattt cgttaacaca
     5521 ccagttcagc gcgtttgccg ccagcttcat atcggtaacg acaggggcga gcaggtgcgg
     5581 gatgccttcg taaatgctca attccagcat tttcggatcg atcataatca tacgcacgtc
     5641 ttccggcgcg gctttgaaaa gcatagacag aatcatcgcg ttgacaccca ccgatttgcc
     5701 cgaaccggtc gtgccggcaa ccaacaaatg cggtgctttg cccaagtcgg ttacgacggg
     5761 ctgtccggtg atgtcctgac cgagcgcgag cgtcagcttg gatttggatt cggcaaactc
     5821 gggcgaattg aagatttcgc tcaggcgtat catttggcgt ttcgggttcg gaagttccaa
     5881 acccatacag gttttgccgg ggatggtttc gacaacgcgg atggaagcca cgccgagcga
     5941 acgcgccaag tctttttcca gatttagaac ggaattgccg cgcacgccga catcgggttc
     6001 gatttcataa cgcgtaatca cggggccgga ataagaatcg acaaccttga ccttgacttt
     6061 gaactccgcc aatttttctt cgatggtgat gctgttttcc aacagttctt cttcggtttg
     6121 cgtcgcctcg ggattgaaca gcggaggcag aagcaggtcg gttgtcggca ggtgttcgta
     6181 taccgcatcg gtttcttcag attggaacgc cccttcatcc gcttccgtat ccgatacccg
     6241 gcaggacggg cgttcagacg gcacatcttc aaacggacaa atcgcctgac tgtcatgccc
     6301 gaacgcttcg gtttccgaca gatattgccc gtttgaccgc tctgccgcac cttcactgcc
     6361 gtcatctgca atagcggcgg tttcctcctg ccaacctcca ttcaaaacat catcggcaag
     6421 atggtcggtt tcggcaatgc ggctgcgttg cgcctgctcg aatcctgacg gcggttcata
     6481 ggtacggttg tagatttccg atacgggagg cggcggcgga atatcgattg cggtcatggg
     6541 aactttcggc acttcgggtg gttcgaccac ccaagcatcg ggcgcggcag gttcttcaat
     6601 atggatatcg gcagtttcat cataaaccgg accgccgtat cccacagacg aaacggtttc
     6661 cgtgaaaaca ttttcggttt cagacggcat ttcgacatcc cgtttcccga caaccgtccg
     6721 actttccgga atcaggcgcg aaatccgcgc ctccgcagaa accgttgcct tgttcggttc
     6781 tttcaaattg acggaaacgc ggcggcgggc atcgcggacg gctgtgccgt ctgaaacgga
     6841 ctgcccttgg gaaacatccg gggattttgc ctccgcctgc cctgcatgac ggcggaacgg
     6901 cgcattccgt gcattttcgg ctttgactgc agaaaaggca gacggatgct gcttctcaaa
     6961 atacggctca aatccgtaat ccgcagactc ggaaaacgct tctttgtccg catcgaacat
     7021 acgggaatac gtgcgttgaa gcacagggtc gtccaaaccg ataatctgca gcccttccat
     7081 cggggtatcg gacacgcgga ctttggggac cgctgtttcg tttttctcaa atgcatcgat
     7141 atagcgtttt ttcgtttccc ttaaagccgc gctgtttaaa gcacgcgttg cttcttccaa
     7201 agtgatttcc ttaaaaaccg gacggacggg cgaaatttcg ctttcagacg gcatcaaccc
     7261 ttcagcaata ctccggtcga atgggatgcg gcggttgtcg attacggcag ttgcaatgtc
     7321 ttccgtatcg gcagcctctt cctccgcagc ttctgcttct tccgtttccg cttcttccgt
     7381 cccgtttcca ctgtctgaat acccgtcgga tgcgttcgga acatccgcac ggtttgcaga
     7441 agcaggcgga acgagcctgt ccggttcgga ttcgtgcgct aaatagtttc ggcagaaacg
     7501 gacgacaccg acgaacagcc aatacactgc cattttgacg gcatggaaaa gcatcagggc
     7561 aagttcggga aaatcgggca taccgtcttt gatttcaggc agctccgcct gtttttcccc
     7621 tttcttttcc tgccacgcag aaacctcgcg catccactcg cgttcggatt gtgcgcggac
     7681 aaaaaacaag ccgacaagcg caagcaacaa aataacgatc aaaactatcc aaaacatatg
     7741 ccgtttcccg caagacaaac gattaaacgg gtttatttta acgtgtttcc atcccaaaaa
     7801 aaacaaccgg ccggcaattc tgccgaaacc gattcggctt tcggtttgcc ccagccgaca
     7861 gtataatagc cgtcccttcc cttaatcttt gcggcattgc catgattttc caaacagtct
     7921 ggttttcaga tatggtactg tcggtttcgt ggattgtcct tatcctgata ctggcagctt
     7981 ccgcgccgtc cgcattccgc tcgcttgccc gctaccgttc cgcccttcca ctgtgtaccg
     8041 taattttttc cgcagcatgg tgtctgaacg cctctgccgg cggcggacag cttgcccaga
     8101 tgaactacca cctgctcgcc gtcaatctgg ttgcactgat ggtgggcact tccgccgccc
     8161 tttggcttgc cgcgctgctg atgctgccct actgcctgct gtttgccgat tctgccggcg
     8221 catatccgcc gaacgctttg gtgctgattc tgcccgcgct ggtcgtcaac cgcctgtcgc
     8281 gtatgctggt caaccgcctg ccgcccaata ttttcatctt tattttcgtc aacggctttc
     8341 tcgcttccgc cgccggcatt ctgttgaccg ggctggtgct gaccggtatt ttggatgctg
     8401 caaacgcttt tccgtccgaa atattgtgga cgaccgccct gcccgtcttt attctgctgg
     8461 cgtgggcgga agccttcctc agcggcattt caactgccat atttgttgca ctgaagcccc
     8521 attggattaa cactttcgac gacaaccgct atcttaagtc cgaccgcggc atatggcggt
     8581 agccttcaga cggcatagac aggcaaaacc atgctttcca acatcatccc cctttccatc
     8641 ggtgcggcac tcggtgcaac ggcgcgttgg ctgctcaacc tcgccgttcc tgccgccatg
     8701 tctcccgcca cgggcaacct gtttgccaac tggacgggcg cgctgctcat cggcatcttt
     8761 gccgaaaccg tcaaccaccc acaatggaag ctgctgctga tcaccggttt tctcggcagc
     8821 ctgaccacgc tttccggatt ttctctggaa accgtaaccc tgctccaatt gaaccgtccc
     8881 gcttcagcac tttccaatat tttcctgcat acggtgggtt cgctgctgct gacttggctc
     8941 gggctgaaga taggggcggc agtcaaataa ccgcaacaaa ttgcctccct ttgttttgac
     9001 ataatctata aattagcttc gcttgtttaa atactggctg tgccaattat agt
//
LOCUS       DAWGNT010000073         8831 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.073, whole genome shotgun sequence.
ACCESSION   DAWGNT010000073 DAWGNT010000000
VERSION     DAWGNT010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8831
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.073"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(79..1500)
                     /gene="hemN"
                     /locus_tag="WHR98_001181"
     CDS             complement(79..1500)
                     /gene="hemN"
                     /locus_tag="WHR98_001181"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003684340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEZ2307867.1"
                     /translation="MKIIQIQNNHNVNDDRPEFDRALIASLPASGPRYTSYPTADRFH
                     DGFREGEYIKALHLRGMGALNKPLSLYIHIPFCNTICYYCGCNKIITKDKSRADAYIE
                     YLEKEMELLAPHLNGRHQLAQLHFGGGTPTFLSDEQIERVFRMIRKHFELIPTGEYSI
                     EIDPRKVSRDTVLMLGRLGFNRMSIGIQDFDPKVQAAVNRIQSYEETKEVIDAAREAG
                     FKSVSVDLIYGLPHQTSESIKTTIDTVLSLDPDRLALYHYAHLPHVFKPQRRIDTVAV
                     PDSEEKLDMLQYCVQTLTERGYVFIGMDHFAKPDDELSIALKEGFLQRNFQGYSTYAD
                     CDLVAIGVSSIGKIGSTYSQNERDIDAYYAAIDEGRLPIMRGYQLNQDDILRRNIIQD
                     LMCRFALDYRIYESMFGIPFDRYFKDELADLEKLAGLGLVRLNSHGLTVTPKGRFLIR
                     NIAMVFDYHLRHKETKAKYSQTV"
     gene            1703..2437
                     /gene="fnr"
                     /locus_tag="WHR98_001182"
     CDS             1703..2437
                     /gene="fnr"
                     /locus_tag="WHR98_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HEZ2307868.1"
                     /translation="MASHNTTHQMKTLCSSCSLRELCLPVGLLPNELSQLDAVIRQSR
                     RLKKGEYLFCVGEAFTSLFAIRSGFFKTTVASQDGRDQVTGFFMSGELIGMDGICSHV
                     HSCDAVALEDSEVCELPFTHIEELGQNIPSLRTHFFRMMSREIVRDQGVMLLLGNMRA
                     EERIAAFLLNLSQRLYSRGFAANDFILRMSREEIGSYLGLKLETVSRTLSKFHQEGLI
                     SVEHKHIKILNLQVLKKMVSGCSHAI"
     gene            complement(2550..3500)
                     /locus_tag="WHR98_001183"
     CDS             complement(2550..3500)
                     /locus_tag="WHR98_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CysB family HTH-type transcriptional regulator"
                     /protein_id="HEZ2307869.1"
                     /translation="MKLQQLKYALEVYQHNLNVSEAAEALFTSQPGISKQIKLLEEEI
                     GIQIFIRSGKRVVSVSQPGKVVLDIAERILRDVQNIKNIGSEFTGQDSGSLTVATTHT
                     QARYALPLIVADFVKRYPKVNLTIKQGSPAAIARMVTSGEADLAIVTERIDDHPELGK
                     LPCYDWTHAVIVPNDHPLLECRNPLRIEDLARFPLITYEFAFNAGSSIARAFSKARLE
                     QPDVALAAADTDVLKTYVRLGLGVGLMAKMAYNPDTDGDLQLVDAAHLFEPSPTWIAL
                     RSDTYLRGYAYDFIQAFAPHLTREKVDRILYTPISEDFSI"
     gene            3864..4592
                     /gene="rmpM"
                     /locus_tag="WHR98_001184"
     CDS             3864..4592
                     /gene="rmpM"
                     /locus_tag="WHR98_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding outer membrane protein
                     RmpM"
                     /protein_id="HEZ2307870.1"
                     /translation="MTKQLKLSALFVALLASGTAVAGEASVQGYTVSGQSNEIVRNNY
                     GECWKNAYFDKASQGRVECGDAVAAPEPEPEPEPAPAPVVVVEQAPQYVDETISLSAK
                     TLFGFDKDSLRAEAQDNLKVLAQRLGQTNIQSVRVEGHTDFMGSDKYNQALSERRAYV
                     VANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPD
                     RRVDVKIRSIVTRQVVPAHNHHQH"
     gene            5461..6417
                     /gene="thiL"
                     /locus_tag="WHR98_001185"
     CDS             5461..6417
                     /gene="thiL"
                     /locus_tag="WHR98_001185"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEZ2307871.1"
                     /translation="MKEFDFIKRYLQTGTDNDVVLGIGDDAAIVRPREGFDLCFSADM
                     LLKDRHFFANVKPEDLAWKVLAVNVSDMAAMGAIPRWVLLSAALPELDEVWLKRFCGS
                     FFGLAKKFGVTLIGGDTTKGDMAFNVTIIGELPKGRALRRDAAVAGDDIWVSGRVGMA
                     AAALNCRLKRCVLPDDVFAECEQKLLRPEPRVGLGLALLPFARAAQDVSDGLAQDLGH
                     ILTASGVGAEIWADSLPSLSVLKDILPRAQWLSYTLAGGDDYELVFTAPESCRSRVLD
                     AAERCGVPVTRIGKINGGCRLKVLDADGRELELHSLGFDHFG"
     gene            6410..6895
                     /locus_tag="WHR98_001186"
     CDS             6410..6895
                     /locus_tag="WHR98_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEZ2307872.1"
                     /translation="MADFKPDFAWLLKRPLCFLAFGFGSGLAPFAPGTFGTLAALPLA
                     FVLILLGIDGLLLAFLCIVLFMWGIRICAYAERETGVSDHGGIVWDEIVAMLFVLAFV
                     PFRWTWWLAAFVLFRLFDALKPSPVGWFDKNLHGGLGIMADDMAAAVMTLIVLRIAML
                     F"
     gene            complement(6955..8631)
                     /gene="ettA"
                     /locus_tag="WHR98_001187"
     CDS             complement(6955..8631)
                     /gene="ettA"
                     /locus_tag="WHR98_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HEZ2307873.1"
                     /translation="MSQQYVYSMLRVSKVVPPQKTIIKDISLSFFPGAKIGLLGLNGA
                     GKSTVLRIMAGVDKEFEGEAVPMGGIKIGYLPQEPELDPEKTVREEVESGLGEVAAAQ
                     KRLEEVYAEYANPDADFDALAEEQGRLEAIIVAGSSTGGGAEHELEIAADALRLPDWD
                     AKIGNLSGGEKRRVALCKLLLSKPDMLLLDEPTNHLDAESVEWLEQFLVRFPGTVVAV
                     THDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEKRLENEAKSEAARVKAMKQEL
                     EWVRQNAKGRQAKSKARLARFEEMSNYEYQKRNETQEIFIPVAERLGNEVIEFVNVSK
                     SFGDKVLIDDLSFKVPAGAIVGIIGPNGAGKSTLFKMIAGKEQPDSGEVKIGQTVKMS
                     LIDQSREGLQNDKTVFDNIAEGRDILQVGQFEIPARQYLGRFNFKGSDQSKITGQLSG
                     GERGRLHLAKTLLGGGNVLLLDEPSNDLDVETLRALEDALLEFAGSVMVISHDRWFLD
                     RIATHILACEGDSKWVFFDGNYQEYEADKKRRLGEESAKPKRIKYKPVTR"
BASE COUNT         1957 a         2147 c         2408 g         2319 t
ORIGIN      
        1 cttggtttcg gaacggtcgg acacaaaggt gcggaacgtt atgatatcct gccgacggca
       61 tttgtacgtt agccacaatc acactgtttg cgaatatttc gccttggttt ctttatggcg
      121 caggtggtaa tcgaagacca tggcgatgtt gcggatgagg aagcgtcctt ttggggtaac
      181 ggtcagcccg tggctgttca ggcgcaccaa tcccaagccg gcgagttttt ccaaatccgc
      241 cagttcgtct ttgaagtagc ggtcgaacgg gatgccgaac atactttcgt aaatccgata
      301 gtcgagcgcg aaacggcaca tcaaatcctg aatgatgttg cggcgcagga tgtcgtcctg
      361 attgagctga taaccgcgca tgatgggcag tctgccttcg tcgatggcgg catagtaggc
      421 atcgatgtcg cgttcgtttt gggaataggt gctgccgatt ttgccgatgg acgacacgcc
      481 gatggcgacc aaatcgcaat ccgcgtaggt cgaatagcct tggaagttgc gctggaggaa
      541 gccttctttg agggcgatgg agagttcgtc gtcaggtttg gcgaaatgat ccatgccgat
      601 gaagacgtag ccgcgctctg tcagggtttg gacgcagtat tgcagcatat cgagcttctc
      661 ttcgctgtcg ggaacggcga cggtatcgat gcggcgttgc ggtttgaaca cgtgcggcag
      721 gtgggcgtag tgataaaggg cgaggcggtc gggatcgagc gacaaaacgg tatcgatggt
      781 ggttttgatg ctttccgaag tctggtgcgg caggccgtaa atcaaatcga cgctgacgga
      841 tttgaacccc gcttcgcgcg ccgcatcgat gacttctttg gtttcttcgt aactttggat
      901 gcggttgacc gccgcctgca ctttggggtc gaaatcctga atgccgatgc tcatgcggtt
      961 gaagccgagc ctgccgagca tgaggacggt gtcgcggctg actttgcgcg ggtcgatttc
     1021 gatggagtat tcgccggtgg ggattaactc gaaatgtttg cgtatcatgc ggaagacacg
     1081 ttcgatctgt tcgtcgctca aaaaggtcgg cgtgccgccg ccgaagtgca gttgggcaag
     1141 ctggtgccgt ccgttcagat gtggagcgag cagttccatt tctttttcaa gatattcgat
     1201 gtaggcatcg gcgcggcttt tgtctttggt gatgattttg ttgcagccgc agtagtagca
     1261 gatggtgttg cagaacggaa tgtgaatgta aagggaaagc ggtttgttta acgcgcccat
     1321 accgcgcaaa tgtaaagctt tgatatattc gccttcgcgg aaaccgtcat ggaaacggtc
     1381 ggcggtaggg taggaagtgt agcgcgggcc gctggcgggc aggctggcaa tcagcgcgcg
     1441 gtcaaactcg gggcggtcat cgtttacatt gtgattgttc tgtatctgaa tgattttcat
     1501 ggtgtgtgtg cgattttatg atgttagtca aattttggat agtttggtag aatgccacag
     1561 tatgataaac ctgtcttgat atgtgtcaat aagcacatat agtggattaa atttaaataa
     1621 ggacaaggcg aggcaacgcc gtactggttt aaatttaatc cactataatc atgatggggc
     1681 aaagcgcaca aaaaggtacg gtatggcttc gcataatact acacatcaga tgaaaacgct
     1741 gtgttcttcc tgttctttgc gggaactctg cctgcctgtc gggctgctgc ccaacgagct
     1801 cagccaactc gatgccgtca tccgtcaaag ccgccgcctg aaaaagggcg aatacctgtt
     1861 ctgtgtcggc gaagccttta cctcgctctt tgccatccgt tcgggcttct tcaaaacaac
     1921 cgtcgccagt caggacggcc gcgatcaggt aacgggtttc tttatgtcgg gcgaactcat
     1981 cggcatggac ggcatctgtt cccatgtgca cagttgcgac gcggtcgcct tggaagacag
     2041 cgaagtgtgc gaactgccgt ttacccacat cgaagaactg gggcaaaaca tccccagcct
     2101 gcgtacgcac ttcttccgca tgatgagccg tgaaatcgtg cgcgaccaag gtgttatgct
     2161 gctgttgggc aatatgcgcg ccgaagagcg gattgccgcc ttcctgctga acctttccca
     2221 acgcctttat tcccgaggtt ttgctgccaa cgacttcatc ttaagaatgt cccgcgaaga
     2281 aatcggcagt tatctcgggc tgaaacttga aaccgtcagc cgcacattat ccaagttcca
     2341 tcaggaagga ttgatttccg tcgaacacaa acacatcaaa atcctcaatc tgcaggtgtt
     2401 gaagaagatg gtatccggtt gttcgcacgc catttgatta acccgtacga acatttcaga
     2461 cggcattctc aataaacaca gggcagacga aaacatctgt cctgtttgtt gtatctgccg
     2521 caaagtgccg tctgaaaacc ggcagccgcc taaatcgaaa aatcctcgct gatgggcgtg
     2581 tacagaatcc tatccacctt ctcgcgtgtc aggtgcggcg caaacgcttg gataaagtcg
     2641 taggcatatc cgcgcaaata agtatcgctg cgcaaagcaa tccacgtcgg cgacggctcg
     2701 aacaggtgtg ccgcatccac aagctgcaaa tcgccgtccg tatccgggtt gtacgccatt
     2761 ttcgccatca gtcccacgcc caaacccaag cgcacataag tcttcaatac gtccgtatcc
     2821 gccgccgcca atgcgacatc cggctgttcc aaacgggctt tggaaaatgc ccgcgcgatg
     2881 ctgctgcccg cattgaatgc aaattcataa gtaatcagcg gaaacctcgc caaatcttca
     2941 atgcggaggg ggtttctgca ttcgagcaag gggtggtcgt tcggtacgat aaccgcatga
     3001 gtccagtcat agcagggaag ttttcccagt tcgggatggt cgtctatccg ttccgtaaca
     3061 atcgccaagt ccgcctcgcc tgaggtaacc atacgtgcga tggcggcagg gctcccctgt
     3121 ttgatggtca ggttgacttt cggatagcgt ttcacaaaat cggcaacaat caagggtagg
     3181 gcatagcgtg cctgagtatg cgtcgtggca accgtcagcg aaccgctgtc ctgtccggta
     3241 aactcgctgc cgatattttt aatgttctgt acatcgcgta aaatacgttc cgcaatatcc
     3301 aaaaccacct tgcccggctg cgagaccgaa accacgcgct tgccgctgcg gataaaaatc
     3361 tgaatgccga tttcttcttc cagcaatttg atttgtttgg agatgccggg ttgcgaagta
     3421 aacaaggctt cggccgcttc ggaaacgttc aggttgtgct ggtaaacttc taaggcgtat
     3481 ttcaattgtt gtaatttcat ggcgggtcgg tgtgggtctg tgtcgggtgg ctgaacattg
     3541 tttataattt atcatatttt cttgccggta cggtatgggg ctttgctgtt gtgtttgttg
     3601 tttttgtgca acggcaatcg tgcgatatgg aaaaaatccc cctaaagtaa tgacacggaa
     3661 ttgatttttc ggcatgatag actatcagga aacaggctgt tttacggttg ttttcaggcg
     3721 ttgagtattg acagtccgcc ccctgcttct ttatagtgga gactgaaata tccgatttgc
     3781 cgccatgttt ctacagcggc ctgtatgttg gcaattcagc agttgcttct gtatctgctg
     3841 tacaaattta atgagggaat aaaatgacca aacagctgaa attaagcgca ttattcgttg
     3901 cattgctcgc ttccggcact gctgttgcgg gcgaggcgtc cgttcagggt tacaccgtaa
     3961 gcggccagtc gaacgaaatc gtacgcaaca actatggcga atgctggaaa aacgcctact
     4021 ttgataaagc aagccaaggt cgcgtagaat gcggcgatgc ggttgctgcc cccgaacccg
     4081 agccagaacc cgaacccgca cccgcgcctg tcgtcgttgt ggagcaggct ccgcaatatg
     4141 ttgatgaaac catttccctg tctgccaaaa ccctgttcgg tttcgataag gattcattgc
     4201 gcgccgaagc tcaagacaac ctgaaagtat tggcgcaacg cctgggtcaa accaatatcc
     4261 aatctgtccg cgtcgaaggc cataccgact ttatgggttc tgacaaatac aatcaggccc
     4321 tgtccgaacg ccgcgcatac gtagtggcaa acaacctggt cagcaacggc gtacctgttt
     4381 ctagaatttc tgctgtcggc ttgggcgaat ctcaagcgca aatgactcaa gtttgtgaag
     4441 ccgaagttgc caaactgggt gcgaaagtct ctaaagccaa aaaacgtgag gctctgattg
     4501 catgtatcga acctgaccgc cgtgtggatg tgaaaatccg tagcatcgta acccgtcagg
     4561 ttgtgccggc acacaatcat caccaacact aaggctaggc aatatcttgc cgatgcatga
     4621 ggttagtgga ttttgtacca ggtactgttg caatattcgt gaaacgtcgg tcggcatcga
     4681 tgatgtgaaa caaacccccg cttttgcggg gtttgttttt ttgggtggtt ttctgaaacg
     4741 gctatcgtca gaatcgaggt gcaggttcgg attcggattc agatttagat tcagattcag
     4801 attcagattc agattcagat tcagattcag gtttgtgtcc cattgccgtg ctttatagtg
     4861 gattaacaaa aatcaggaca aggcgacgaa gccgcagata gtacaaatag tacggaaccg
     4921 attcacttgg tgcttcagca ccttagagaa tcgttctctt tgagctaagg taaggcaacg
     4981 ctgtactggt ttaaatttaa tccactatat cggttgaaac tctgatttta aggcggtagg
     5041 atgtgggttt gcccatagaa agggaatcct ttctgtatca agccctgaaa gggataattc
     5101 atacaaattc acgcctttcc ccttcattgg gaaatggatg gaatcgtgcc agatgtgtgc
     5161 ggcactgtat gccggatatg gttttatcat cagccctttt cggttgaaac cccgtcagtt
     5221 gcagcgattg agcctaatcg gtggcggaag ttgccgcttt gcattcgggg tggcgtgcag
     5281 tgcggtgctt tgatatgccg tttgtgtgtt gaaacagggt ggtcggtgca tacgggtacg
     5341 gtatggccaa agctaaaagt gaaatacgct gaaacactga atgagccgct ttattgtttg
     5401 tacggccttt gctgccttgc tatgatttaa attggattcg cccgccggat attttgggat
     5461 atgaaagaat ttgacttcat caaacggtat ttgcaaacag gcacggataa tgatgtcgta
     5521 ttgggcatag gcgacgatgc ggcgattgtc cgcccgcgtg aaggcttcga tttgtgtttc
     5581 agtgcggata tgcttttgaa ggacaggcat ttttttgcaa atgtcaaacc tgaagacttg
     5641 gcttggaagg ttttggccgt caatgtttcg gatatggcgg cgatgggtgc gataccgcgt
     5701 tgggtgttgc tgagcgcggc gttgcccgaa ttggatgagg tatggctgaa acggttttgc
     5761 ggcagctttt tcggtttggc aaaaaagttt ggcgtaacgt taatcggcgg cgatacgacc
     5821 aagggcgata tggcgttcaa tgtaaccatt atcggcgaat tgccgaaggg tagggcgttg
     5881 cggcgtgatg cggcggttgc gggcgacgat atttgggtgt cggggcgtgt cggtatggcg
     5941 gcggcggctt tgaactgccg tctgaaacgg tgtgtgttgc cggatgatgt gtttgctgaa
     6001 tgcgaacaaa agctgctccg ccccgagcca agggttgggc tggggcttgc gctgttgccg
     6061 tttgcccggg cggcgcagga tgtttcagac ggcctcgcgc aagatttggg gcatatcctg
     6121 accgcttccg gcgtgggggc ggaaatttgg gccgattcgc tgccgtcttt atccgtattg
     6181 aaagatattt tgccccgagc gcaatggctg tcttatactt tggcgggcgg cgacgattac
     6241 gagctggtgt ttaccgcgcc ggaaagttgc cgcagccgcg tgcttgatgc ggcagaacgg
     6301 tgcggcgtgc cggtaacgcg catcggcaaa atcaacggag gatgccgtct gaaggtttta
     6361 gatgccgacg gcagggaatt ggaactacat tctttaggat tcgatcattt tggctgattt
     6421 taaacctgac tttgcgtggc tgttgaaacg accgttgtgt tttttggctt tcggtttcgg
     6481 cagcgggctg gctccgttcg cgccgggtac atttggcact ttggcggcac tgcctttggc
     6541 atttgtgctg attttgctcg gcatagacgg gctgctgctg gcttttttgt gtatcgtgct
     6601 gtttatgtgg ggcatacgca tttgcgctta tgcggaacgt gaaacgggtg tcagcgacca
     6661 tggtgggatt gtttgggacg agattgtcgc catgctgttt gtgctggcgt ttgtgccgtt
     6721 caggtggacg tggtggctgg cggcatttgt cctattccgt ctgtttgacg cgctcaaacc
     6781 gtctcccgtc ggttggtttg acaagaatct gcacggcggt ttgggcatta tggcggacga
     6841 tatggcggct gcggtgatga ctttgattgt cttgaggatt gcaatgctgt tttaaacggt
     6901 gctgccttgt aaaaatgccg cctgaaagcc tttcagacgg cattgcttcg tgggttaacg
     6961 cgttaccggt ttgtatttga tgcgtttcgg tttcgcgctt tcttcgccca aacggcgttt
     7021 cttgtcggct tcgtattcct gatagttgcc gtcgaagaac acccatttag agtcgccttc
     7081 gcaagccaag atatgcgtag caatacggtc gaggaaccag cggtcgtgcg aaatcaccat
     7141 cacgctgccg gcaaattcca gcaatgcgtc ttccaacgcg cgcagggttt ccacgtcgag
     7201 gtcgttggac ggttcgtcca gcagcaacac attgccaccg cccaacaagg tttttgccaa
     7261 gtgcaaacgt ccgcgttcgc cgccggaaag ctgccccgtg attttgcttt ggtcgctgcc
     7321 tttgaaattg aagcgtccca aatattggcg ggcggggatt tcaaactgcc cgacctgtaa
     7381 aatatcgcga ccttcggcaa tgttgtcgaa cacggttttg tcgttttgca aaccttcgcg
     7441 gctttggtca atcaagctca ttttcacggt ttgcccgatt ttcacttcac cggaatcggg
     7501 ctgctctttg cccgcaatca ttttaaacag tgtcgattta cccgcgccgt tcggaccgat
     7561 gatgccgaca atcgcgcccg caggcacttt gaagctcaaa tcgtcaatca gcactttgtc
     7621 gccgaacgat ttggaaacat tcacaaattc aatcacttcg ttacccaaac gctcggcgac
     7681 gggaataaag atttcctgcg tttcattgcg tttttggtat tcgtagttgc tcatttcttc
     7741 aaaacgagcc aaacgcgctt tggacttggc ttggcggcct ttggcatttt ggcgcaccca
     7801 ttccaattcc tgcttcatcg ctttcacgcg cgcagcttca gacttcgcct cgttttccaa
     7861 acgtttttct ttctgctcca gccaagacga gtaattgcct ttccacggaa taccgtgtcc
     7921 acggtcgagt tccaaaatcc attcggcagc gttgtccaag aagtagcggt cgtgcgttac
     7981 cgcaacgact gtgccaggga agcgcaccaa gaattgctcc agccattcga ccgattccgc
     8041 atccaagtgg ttggtcggct cgtccaacaa caacatatct ggtttgctca acaagagttt
     8101 gcacaaggca acgcggcgtt tttcaccgcc ggacagattg ccgattttgg catcccaatc
     8161 aggcaggcgc agcgcgtcgg cagcgatttc caattcatgc tctgcacctc cgccggtaga
     8221 cgaacccgcc acaataatcg cttccaaacg gccctgctct tccgccaacg catcaaaatc
     8281 cgcatcagga ttggcatact cggcatacac ttcttccaaa cgtttctgcg cggcagccac
     8341 ttcgcccaaa ccgctttcca cttcctcacg cacggttttc tctggatcaa gctcaggctc
     8401 ttgcggcagg tagccgattt taatgccgcc catcggcacg gcttcgccct caaattcctt
     8461 atccacaccc gccataatcc gcagcacggt ggacttgccc gcgccgttca aaccgagcaa
     8521 accgattttc gcgccgggga agaaagaaag ggaaatatct ttaatgatgg ttttctgcgg
     8581 cggcacaacc ttgcttacgc gcagcataga atagacgtat tgttgggaca tggttttctc
     8641 gttttcatca aacaaatttc agacagccat tttaaccgat aatttgattt aagccagttt
     8701 atccgcgaac cggtattgcc aaaatcgggc aggattcata aaatccgctt atccctttga
     8761 aattatatag acaaaaaaaa taataatgat aggggatcgc cgccccggca accatttcgg
     8821 attttccaaa g
//
LOCUS       DAWGNT010000074         8693 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.074, whole genome shotgun sequence.
ACCESSION   DAWGNT010000074 DAWGNT010000000
VERSION     DAWGNT010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8693
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.074"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(103..1020)
                     /gene="thrB"
                     /locus_tag="WHR98_001188"
     CDS             complement(103..1020)
                     /gene="thrB"
                     /locus_tag="WHR98_001188"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEZ2307874.1"
                     /translation="MSVYTSVSDDEMRGFLSGYDLGEFVSLQGIAQGITNSNYFLTTT
                     SGRYVLTVFEVLKQEELPFFLELNRHLSMKGVAVAAPVARKDGRLDSVLAGKPACLVA
                     CLKGSDTALPTAEQCFHTGAMLAKMHLAAADFPLEMENPRYDAWWTEACTRLLPVLSQ
                     DDAALLCSEIDALKDNLGNHLPSGIIHADLFKDNVLLDGGQVSGFIDFYYACRGNFMY
                     DLAIAVNDWARTADNKLDEALEKAFIGGYEGVRPLSAEEKAYFPTAQRAGCIRFWVSR
                     LLDFHFPQAGEMTFIKDPNAFRNLLLSLG"
     gene            complement(1057..1785)
                     /gene="ubiG"
                     /locus_tag="WHR98_001189"
     CDS             complement(1057..1785)
                     /gene="ubiG"
                     /locus_tag="WHR98_001189"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HEZ2307875.1"
                     /translation="MGGKMSDKKYNVDEGEIAKFSRIADKWWDKSGEFKTLHDINPLR
                     LDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLHAALNN
                     VADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIVRACANLVKPDGMVFFST
                     INKNPKSYLHLIVAAEYLLKFVPKGTHDWKKFIAPAELARMCRQAGLDVADTKGMTYH
                     VLSQTYALCDSTDVNYMFACRPAF"
     gene            1937..3178
                     /locus_tag="WHR98_001190"
     CDS             1937..3178
                     /locus_tag="WHR98_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235268.1"
                     /note="tryptophan transporter of high affinity; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan permease"
                     /protein_id="HEZ2307876.1"
                     /translation="MPTKTPSLFGGAMIIAGTVIGAGMLANPTATSGVWFTGSLAVLL
                     YTWFSMLSSGLMILEVNTHYPHGASFDTMVKDLLGRGWNIINGIAVAFVLYLLTYAYI
                     FVGGDLTAKGLGSALGGNVSLTVGQLVFFGILAFCVWASARLVDRFTSVLIGGMVLTF
                     IWATGGLIADAKMPVLFDTQAPVGTNYWIYAATALPVCLASFGFHGNVSSLLKYFKGD
                     APKVAKSIWTGTLIALVIYVLWQTAIQGNLPRNEFAPVIAAEGQVSVLIETLSKFAQT
                     GNMDKILSLFSYMAIATSFLGVTLGLFDYIADIFKWNDSVSGRTKTAALTFLPPLISC
                     LLFPTGFVTAIGYVGLAATVWTGIIPAMLLYRSRKKFGAGKTYKVYGGLWLMVWVFLF
                     GIVNIAAQVLSQMELVPVFKG"
     gene            3328..4383
                     /locus_tag="WHR98_001191"
     CDS             3328..4383
                     /locus_tag="WHR98_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEZ2307877.1"
                     /translation="MKLKIDIATNNFKHGGGTERYTLDLVKGLNRQNITPAVYATKFD
                     HGIPEYAMIEPHLVDQHRTLKKLRSFLFSSRLAQTRKNSAAKLIACHHADYADLLICG
                     GTHLGYLHHMAQKPNLLDRLAIRRNRSNYATAKLIMAHSHMMRRELVGLYGVPPERIQ
                     VAPPPADTERFFPQPGETADLRAKYGFADYETVFLFPSTGHTRKGLELLADFFEHTGL
                     PVKLAVVGSPLPRPMKNVVGLGFCTDMPELYRAADFTIMASLYEPFGLVGVESVLCGT
                     RVVLSENMACTEVMNEEAGFFFSRQNPETLAQAVAQAVSLKKQGGHRLSDPMRALNYN
                     PSLSHHIDRLTDILASV"
     gene            complement(4450..6102)
                     /locus_tag="WHR98_001192"
     CDS             complement(4450..6102)
                     /locus_tag="WHR98_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEZ2307878.1"
                     /translation="MVAYVFLFLFVTAALVLIIRSHYRWTYFFASALFVFLAGGMLML
                     TAQWQRALNFASVWFVVLILFHRLKIHYYKQPLLISDFLLIADWRNWETLFHYKEAVI
                     GMAGLLALAAYAVFGWSGADALGLPWRWAGTVLFAAAFVSMRHFSKHPGAVKTWLDSL
                     PDDGRDVFLNLPMSCRAVFFQVPVFEGDGEAFAKQMPSETQPYGMSDEKPDIVVTLME
                     STLDPHCFDFAAAKIPDLKMFGRQEDTVFSSPLRVHTFGGATWKSEFAFLAGVPSTDF
                     GALASGVFYSVVPHLQTGFVRNLREHGYFCVALSPFTKGNYNAKAAYDHFGFNLMFQP
                     QDLGYPAPMGKNLWHISSEEMMQYARMILEKRHPDLENVRQPMFVYVLTMKEHGPYRT
                     DTDNVFDLDVPDLNAKTVSALNDYIGRIADLDKAVESFDRYLHERGKPFVFGYFGDHQ
                     VPFEGVSVRKKWDYAQPDYVTQFAVRSNIAGGFVQRQDFLDLAFAGGVLMEAAGLEAK
                     DGFMRANMAMRGLCGGGLEDCPNRKLVGDYRNYLYDVLKIAS"
     gene            6245..6808
                     /gene="gmhB"
                     /locus_tag="WHR98_001193"
     CDS             6245..6808
                     /gene="gmhB"
                     /locus_tag="WHR98_001193"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HEZ2307879.1"
                     /translation="MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGY
                     TVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEINGIWFCPHTDADNCNCRKP
                     KPGMIEDIIGRFNAQASETWLVGDSLRDLQAIDAVGGKPALVLTGKGKKTLSQHGHEL
                     PEHTQVFDTLLDFSQYIMQENAAPQAD"
     gene            6838..7581
                     /locus_tag="WHR98_001194"
     CDS             6838..7581
                     /locus_tag="WHR98_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEZ2307880.1"
                     /translation="MLIIRNLIYWLILCSTLIFLFPFMLLASPFRDGAHKMARVWVKI
                     LNLSLKHIVGLKYRIIGAENIPDRPAVICAKHQSGWETLALQDIFPPQVYVAKRELFK
                     IPFFGWGLKLVKTIGIDRNNRREANEQLIKQGLARKNEGYWITIFPEGTRLAPGKRGK
                     YKLGGARMAKMFEMDIVPVALNSGEFWPKNSFLKYPGEITVVICPTIPHASGSEAELM
                     EKCEHLIETQQPLISGAGPFAAKMPSETA"
     gene            7578..8267
                     /locus_tag="WHR98_001195"
     CDS             7578..8267
                     /locus_tag="WHR98_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEZ2307881.1"
                     /translation="MTAFVHTLSDGMELTVEIKRRAKKNLIIRPAGTHTVRISVPPHL
                     SAAALNRWLRDNEAVLRRTLAKTPPHNTANRLPEHIWFHGRQLALTAHQDMQILLMPS
                     EIRVPEGAPEKQLALLRDFLERQAHSYLIPRLEHHARTTQLFPASSSLTSAKTFWGVC
                     RKTTGIRLNRRLVGAPEYVADYVCIHELCHLAHADHSRAFWALTRRFAPYTPEAKQWL
                     KIHGRELFALG"
     gene            8307..8492
                     /locus_tag="WHR98_001196"
     CDS             8307..8492
                     /locus_tag="WHR98_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307882.1"
                     /translation="MPEQARARPIQTAMTLCRRFGAGWRHTRRLPRFISHRSSETRNP
                     PGPTCGMKRLSWREVFY"
BASE COUNT         2112 a         2812 c         2043 g         1726 t
ORIGIN      
        1 aatggaaaat acccggctat cgtctcattt tcgttttaat cagccataaa aatgccgtct
       61 gaaacccttt cagacggcat ttctgtcaaa cgccggacgc actcaaccca aactcaacag
      121 caggttgcgg aacgcgttcg ggtctttgat aaacgtcatc tcgcccgcct gcggaaaatg
      181 aaagtccaac aggcgcgaca cccaaaaacg gatgcagccg gcacgttggg cggtcgggaa
      241 atacgccttt tcttcggcac tcaaggggcg cacgccctca taaccgccga taaacgcctt
      301 ttccaacgcc tcatccaact tattgtccgc cgtccttgcc caatcgttga ccgcaatcgc
      361 caagtcatac ataaaattgc cccggcaggc ataatagaaa tcgatgaagc ccgatacctg
      421 accgccgtca agcaacacat tgtctttaaa caggtcggcg tggatgatgc ccgaaggcag
      481 atgattgccg agattgtcct tcagcgcatc gatttcggaa cacagcagcg cggcatcgtc
      541 ttgcgacagg acgggcagca gccgggtgca cgcctccgtc caccacgcat cgtaacgcgg
      601 gttttccatt tccaaaggga aatcggcggc ggcaaggtgc attttggcca gcatcgcacc
      661 ggtatggaaa cactgctccg ccgtcggcag cgcggtatcc gaacctttca ggcaggcaac
      721 caaacaagcc ggcttgcccg ccaaaacgga atcaagccgg ccgtctttgc gcgcaaccgg
      781 cgcggcaacc gccacgccct tcatactcaa atgccggtta agctccagaa aaaacggcag
      841 ctcttcctgt ttcaacactt caaacacggt cagcacataa cgtcccgaag tcgtcgtcag
      901 aaaataattg ctgttggtaa tcccctgcgc gatgccctgc agggaaacaa attcccccaa
      961 atcgtaaccg ctcaggaagc cgcgcatttc atcatcggaa acactggtat agacagacat
     1021 atcaactcac ttgctcaaaa acgggcaaac ccgccgtcag aacgccggac ggcaggcaaa
     1081 catataattc acatcggtcg aatcgcacag ggcataagtt tgcgacaaca catggtaagt
     1141 catacccttc gtatccgcca catccaagcc tgcctgacgg cacattcgcg ccagctcggc
     1201 aggtgcgatg aattttttcc agtcgtgcgt acctttgggg acaaacttca acagatattc
     1261 cgccgccaca atcagatgca ggtacgattt cgggttttta ttgatggtgg aaaaaaacac
     1321 catgccgtcc ggtttgacca gattggcaca agcacgcacg atggcggcgg gatcggggac
     1381 gtgttccatc atttccatgc acgttaccac atcgaacgag tgcggttccg cctcggcaag
     1441 gtcttccacg cggatacatt cgtattcgat atcggcgaca ttgttcaaag ccgcgtgcag
     1501 gcgggcggtt tccagcgact gctccgccat gtcgatgccc tttacaaacg ccgcgccgcg
     1561 ccgcgccata ctttccgcca agatgccgcc gccgcagccc acgtccaaaa cccgtttgcc
     1621 gcacaaatcc gcgtgtccgt cgatataatc cagccgcagc ggattgatgt cgtgcaaggt
     1681 tttgaactcg cccgacttgt cccaccattt gtcggcaatc cggctgaatt tggcgatttc
     1741 cccctcatcg acattatatt ttttgtcgga cattttccct cccatctgac gaaccgccca
     1801 ctccaaaacc caagattata ctatggaaca caatgccgtc tgaaagcctt ttcgggcggc
     1861 gcggcgcaaa tgccttacaa atccttacac tttacggcat aatggcggct cgctttttct
     1921 ggcagaaaga caaaatatgc ccaccaaaac cccttcactg ttcggcggcg cgatgattat
     1981 cgccggcacg gtcatcggcg caggtatgct cgccaacccg accgccacat ccggcgtatg
     2041 gtttaccggc tcgctggccg tgttgctgta cacctggttt tctatgcttt ccagcggcct
     2101 gatgattttg gaagtcaaca cccattatcc gcacggcgca agtttcgaca cgatggtcaa
     2161 agacctgctc ggacgcggct ggaacatcat caacggcatc gccgtcgcct tcgttttata
     2221 cctgctcacc tacgcctaca tcttcgttgg cggcgacctg accgccaaag gcttaggcag
     2281 cgccttgggc ggcaatgttt cactcaccgt cggacaactc gtcttcttcg gcatcctcgc
     2341 cttttgcgta tgggcatccg cacgcttggt cgaccgcttc accagcgtcc tcatcggcgg
     2401 catggtatta acctttattt gggcaaccgg cggcctgatt gccgatgcca aaatgcccgt
     2461 cctgttcgac acccaagccc ccgtcggcac caactactgg atttacgccg ccaccgccct
     2521 gcccgtctgc cttgcgtcat tcggtttcca cggcaacgtc tccagcctgc tcaaatactt
     2581 taaaggcgac gcgcccaaag tggctaaatc catctggacg ggcacactga ttgcgctggt
     2641 aatttacgtc ctctggcaaa ccgccatcca aggcaacctg ccgcgcaacg agttcgcccc
     2701 cgtgattgcc gccgaagggc aagtctccgt cctcatcgaa accctgtcca aattcgccca
     2761 aaccggcaat atggataaaa tattgtccct attttcctac atggcgatcg ccacctcgtt
     2821 tttaggtgta acgctcggac tcttcgacta catcgccgac atcttcaaat ggaacgacag
     2881 cgtgtccggc cgcaccaaaa ccgccgcgct gaccttcctg ccgcctctaa tttcctgcct
     2941 gctcttcccc accggctttg ttaccgccat cggctacgtc ggcctggcgg caaccgtctg
     3001 gacaggcatc atccccgcca tgctgctcta ccgttcgcgc aaaaaattcg gcgcaggcaa
     3061 aacctataaa gtttacggcg gcttgtggct gatggtttgg gtcttccttt tcggcatcgt
     3121 caacatcgcc gcacaggtat tgagccaaat ggaactcgtc cccgtattta aaggataaag
     3181 gcaaaatgcc gtctgaagcc cgccggcggc ttcagacggc attgccgcaa caaacggcaa
     3241 ccgtattccg gcacacagcg cattaccctg cccctcacgc acaaatcccg ccccgacaaa
     3301 ccgggacgca accataaagg aacaatgatg aagctcaaaa tagacattgc aaccaacaac
     3361 ttcaaacacg gcggcggcac ggaacgctac acattggatt tggtaaaggg tctgaacaga
     3421 caaaacatca caccggccgt ttatgcgacg aaatttgatc acggcattcc tgaatacgcc
     3481 atgatcgaac cccatcttgt cgatcaacac cggacgctga aaaaactacg ctcattcctc
     3541 ttttcaagcc ggctcgctca aaccagaaaa aacagtgccg ccaaactgat tgcctgccac
     3601 cacgccgatt acgccgacct cctcatctgc ggcggcacac acttgggcta cctgcaccat
     3661 atggcgcaaa aaccgaacct gctcgaccgc ctcgccatac gccgtaaccg cagcaactac
     3721 gccaccgcca aactgattat ggcgcattcc catatgatgc ggcgcgaact ggtcggactg
     3781 tacggcgttc cccctgaaag aatccaagtc gccccccccc ccgcagatac ggaacgcttc
     3841 ttcccgcaac ccggagaaac tgccgacctg cgcgccaaat acggctttgc cgactatgaa
     3901 accgttttcc tgttcccatc gaccggccac acgcgcaaag gtctggaact gcttgccgac
     3961 tttttcgaac ataccggcct gcccgtcaag ctcgccgttg tcggctcccc gctcccccgc
     4021 cctatgaaaa acgtcgtcgg gctgggcttc tgcaccgata tgcccgaact ctaccgcgcc
     4081 gccgacttta ccattatggc ctccctgtac gaacccttcg ggctggtcgg tgtcgaatcc
     4141 gtcctatgcg gcacacgcgt cgtcctctcc gaaaacatgg catgtacaga ggtcatgaac
     4201 gaagaagccg gattcttttt ctcacgccaa aacccggaaa ccctggcgca agccgttgcc
     4261 caagccgtca gccttaaaaa acagggcgga caccgcctgt ccgacccgat gcgtgcactg
     4321 aactacaacc cgtccctgtc gcaccacatc gaccgactga ccgacatact ggcatccgta
     4381 taacaaaatg ccgtctgaac gagttttcag acggcatttt tgcaaccgtt gcagccgtgc
     4441 ggcaaaaagc taactggcaa ttttcaaaac gtcgtacaga tagttccgat agtctccgac
     4501 cagtttccgg ttcgggcagt cttccaaccc tccgccgcac aaaccgcgca tcgccatatt
     4561 cgcacgcatg aagccgtctt tggcttccag accagccgcc tccatcagca cgccgcctgc
     4621 aaaggcaagg tcgaggaaat cctgccgctg tacgaatccg ccggcaatat tgctcctgac
     4681 ggcaaactgc gttacataat ccggctgcgc gtaatcccat ttcttcctga cggacacgcc
     4741 ctcaaacggt acctgatgat cgccgaaata accgaaaaca aagggtttgc cgcgttcgtg
     4801 cagataacgg tcgaaacttt ccaccgcttt gtccaaatcg gcaatgcgcc cgatgtagtc
     4861 gttaagcgcg gatacggttt tcgcattcaa atcaggtaca tccaaatcaa acacattgtc
     4921 ggtatccgtc cgatacggcc cgtgctcctt catggtcagc acatatacga acatcggctg
     4981 ccgcacgttt tccaaatcgg gatggcgttt ttccaaaatc atccgcgcat actgcatcat
     5041 ttcctcactg gaaatatgcc acaggttttt gcccatcggc gcgggatagc ccaaatcttg
     5101 cggctggaac atcagattaa agccgaaatg gtcatatgct gccttggcat tgtagttgcc
     5161 cttggtaaac ggcgagagcg ccacgcaaaa ataaccgtgt tcgcgcaggt tgcggacaaa
     5221 accggtctgc aaatgcggca cgaccgagta aaacacgccg cttgccaacg cgccgaaatc
     5281 cgtggacgga acacccgcca aaaacgcaaa ttctgacttc cacgttgcgc cgccgaaagt
     5341 atgcacgcgc aaaggtgagg aaaatacggt atcttcctgc cgtccgaaca ttttcaaatc
     5401 gggaatcttg gcggcggcaa agtcgaaaca gtgcggatcg agcgtcgatt ccatcagggt
     5461 aacgacaata tcgggtttct catccgacat gccgtacggc tgggtttcag acggcatctg
     5521 tttggcaaac gcttccccgt cgccctcgaa cacgggtact tggaaaaaca ccgcccgaca
     5581 ggacatcggc aggttcaaaa atacgtcgcg cccgtcgtcc ggcagcgagt ccagccacgt
     5641 ctttaccgcg cccggatgtt tggaaaaatg ccgcatcgac acgaacgccg ccgcaaacaa
     5701 aaccgtgcct gcccaacgcc atggcaaacc caaagcatcc gcaccgctcc agccgaaaac
     5761 cgcatatgcc gccaaagcca gcagccccgc cataccgata accgcttcct tataatggaa
     5821 cagcgtttcc caattccgcc agtcggcaat cagcaaaaag tcggaaatca acaacggctg
     5881 tttgtaataa tggattttca gcctgtggaa cagtatcagc accacaaacc agaccgaagc
     5941 gaaattcaag gcgcgctgcc actgagccgt caacatcagc ataccgcccg ccaaaaagac
     6001 aaacagcgcg gatgcgaaaa aatacgtcca acggtagtgc gacctgataa tcagcaccaa
     6061 cgccgccgtt acaaacaaaa ataggaaaac ataggcaacc atcccgcccc actcctcaaa
     6121 acggcatacc tgagccgttg cgaattatta tcgaaagcgt gcattataat gcagcacagg
     6181 cgcatttcca ccgatatttc agtataatgc catccccgac ctgccccaac ccaaaggaac
     6241 cgcgatgaaa ctcatcattc tcgaccgcga cggcgtcatc aatcaggacc gcgatgactt
     6301 cgtcaaatcc gttgacgagt ggatacctgt cgaaggcagc atggatgcgg tggcatttct
     6361 gacgcaggca ggctacaccg tcgccgttgc caccaaccaa tccggcatcg ggcgcaaata
     6421 ttttaccgtt caaaacctta ccgaaatgca cgccaaaatg caccgcctcg tccgtcaggc
     6481 aggcggcgaa atcaacggca tctggttctg cccgcacacc gatgccgaca actgcaactg
     6541 ccgcaagccc aaaccgggta tgattgaaga catcatcgga cgcttcaacg cccaagcctc
     6601 ggaaacctgg ctggtcggcg acagcctgcg cgatttgcag gcaatcgatg ccgtcggcgg
     6661 aaaacccgcg ctggttctga ccggaaaagg caaaaaaacg ctctcccaac acggacacga
     6721 attacccgaa cacacacagg ttttcgatac cttgctcgat ttctcacaat acatcatgca
     6781 ggaaaacgcc gcaccgcaag ccgactgaac ataccgcatt tccgacaagg caaaaccatg
     6841 ctcatcatcc gcaacctgat ttactggctg atactctgtt ccaccctgat tttcctcttt
     6901 ccctttatgc tgctcgcctc gcctttccgg gacggggcgc acaagatggc gcgggtctgg
     6961 gtcaaaatcc tcaacctctc gctcaaacac atcgtcgggc tcaaataccg catcatcggc
     7021 gcggaaaaca tccccgaccg ccccgccgtc atctgcgcca aacaccaaag cggctgggaa
     7081 acgcttgccc ttcaggacat ttttccgccg caggtttacg ttgccaaacg cgagctgttc
     7141 aaaatcccct ttttcggctg gggtttaaaa ctggtcaaaa ccataggcat agaccgcaac
     7201 aaccgccgcg aagccaacga acagctcata aaacaggggt tggcgcgcaa aaacgaaggc
     7261 tattggatta ccattttccc cgaaggcacg cgccttgcgc ccggaaaacg cggcaaatac
     7321 aaactcggcg gcgcgcgcat ggcgaaaatg tttgagatgg acatcgtccc cgtcgccctc
     7381 aacagcggcg aattttggcc gaaaaactcc tttctgaaat atccggggga aatcaccgtc
     7441 gtcatctgtc cgaccatccc gcacgcaagc ggcagcgaag ccgaattgat ggaaaaatgc
     7501 gaacatctca tcgaaacgca acaaccgctt atttccggcg caggcccgtt tgccgccaaa
     7561 atgccgtctg aaaccgcatg accgcctttg tccacaccct ttcagacggc atggaactga
     7621 ccgtcgaaat caagcgccgt gccaagaaaa acctgattat ccgccccgcc ggcacacata
     7681 ccgtccgcat cagcgtccca ccgcacctgt ccgccgccgc cctcaaccgc tggctgcgcg
     7741 acaacgaagc cgtcctgcgg cgaacactgg caaaaacacc gccgcacaat acggcaaacc
     7801 gactgcccga acatatctgg ttccacggca ggcagcttgc cctcaccgcc catcaagaca
     7861 tgcaaatcct gctgatgcca tctgaaatcc gcgttcccga aggcgcaccc gaaaaacagc
     7921 ttgcgctgct gcgggacttt ttggaacggc aggcgcacag ttacctgatt ccccgcctcg
     7981 aacaccacgc ccgcaccaca caactgttcc ccgcctcctc ctcgctgacc tctgccaaaa
     8041 ccttctgggg cgtgtgccgc aaaaccacag gcatacgcct caaccggcgg ctggtcggcg
     8101 caccggaata cgttgccgat tatgtctgca tacacgaact ctgccacctc gcccacgccg
     8161 accacagccg cgcgttctgg gcactgaccc gccgcttcgc accctacacg cccgaagcga
     8221 aacagtggct caaaatccac ggcagggaac ttttcgcctt gggctgacac ggtcccgggc
     8281 cggcccgccg ctttcagacg gcatccgtgc cggaacaggc acgcgcccgc ccgattcaaa
     8341 ccgcgatgac gctttgccgc cggttcgggg caggatggcg gcacacgcgc cgtctgccgc
     8401 gtttcatttc acaccgctct tccgaaaccc gaaacccgcc cggtccgacg tgcggtatga
     8461 aacgcttaag ctggcgcgaa gtcttttact gatttgcccg cgaaaatgcc gtctgaaagg
     8521 ttttcggacg gcattttttt gcgtttccca ggatggcggc ggattcgtaa aaggcggtca
     8581 gggtggattg taggatgggt tgagacctgc cgaatccgcc gcatctgcca aatctaccgc
     8641 cgtcattcct acgaaagtgg gaatctagaa cgcggggtta agaaaacctg cat
//
LOCUS       DAWGNT010000075         8644 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.075, whole genome shotgun sequence.
ACCESSION   DAWGNT010000075 DAWGNT010000000
VERSION     DAWGNT010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8644
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.075"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(107..1030)
                     /gene="era"
                     /locus_tag="WHR98_001197"
     CDS             complement(107..1030)
                     /gene="era"
                     /locus_tag="WHR98_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004286080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEZ2307883.1"
                     /translation="MDIETFLAGERAADGYRCGFVAIVGRPNVGKSTLMNHLIGQKIS
                     ITSKKAQTTRNRVTGIYTDDTAQFVFVDTPGFQTDHRNALNDRLNQNVTEALGGVDVV
                     VFVVEAMRFTDADRVVLKQLPKHTPVILVVNKIDKDKAKDRYALEAFVAQVRAEFEFA
                     AAEAVSAKHGLRIANLLELIKPYLPESVPMYPEDMVTDKSARFLAMEIVREKLFRYLG
                     EELPYAMNVEVEQFEEEDGLNRIYIAVLVDKESQKAILIGKGGERLKKISTEARLDME
                     KLFDTKVFLKVWVKVKSGWADDIRFLRELGL"
     gene            complement(1077..1796)
                     /gene="rnc"
                     /locus_tag="WHR98_001198"
     CDS             complement(1077..1796)
                     /gene="rnc"
                     /locus_tag="WHR98_001198"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEZ2307884.1"
                     /translation="MKDDVLKQQAHAAIQKRLGYAFRDISLLRQALTHRSHHAKHNER
                     FEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLG
                     AGELKSGGFRRPSILADAMEAMFAAVSFDADFNTAEKVVRHLFAERVRRVDFQNQAKD
                     GKTALQEALQARRFALPKYRIEEQIGHANDSMFVISCDLGELGFVCRAKGTSRKAAEQ
                     EAAKEALKWLEEKLPLKKKKK"
     gene            1963..2286
                     /locus_tag="WHR98_001199"
     CDS             1963..2286
                     /locus_tag="WHR98_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2185 domain-containing protein"
                     /protein_id="HEZ2307885.1"
                     /translation="MNAFAQALSSALDRCIATNTVAKQNRPVGFLYREAPVFENDSGW
                     RFFSGDETDEYTDDPDNFSIVSLADIAKTNPETAVLLSQPEGSAWELAEDGTFQTVAD
                     WQPQD"
     gene            2333..2809
                     /locus_tag="WHR98_001200"
     CDS             2333..2809
                     /locus_tag="WHR98_001200"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEZ2307886.1"
                     /translation="MNTIAPNLDGKHLRIGIVQARFTNEIGSEMLKVCCRTLQELGVA
                     DENITVATVPGALEIPIALMNFASSEKFDALIAIGVVIRGETYHFELVSNESGAGVSR
                     VALDYNIPIANAVLTTENDAQAIERIEEKASDAAKVAVECANLVNLLLEEQFEDEE"
     gene            2887..3312
                     /gene="nusB"
                     /locus_tag="WHR98_001201"
     CDS             2887..3312
                     /gene="nusB"
                     /locus_tag="WHR98_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEZ2307887.1"
                     /translation="MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFAKADE
                     ELFNKLFFGTQTNAAEYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVI
                     INEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEPKRR"
     gene            complement(3676..4710)
                     /gene="pyrC"
                     /locus_tag="WHR98_001202"
     CDS             complement(3676..4710)
                     /gene="pyrC"
                     /locus_tag="WHR98_001202"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEZ2307888.1"
                     /translation="MQTLTIIRPDDMHLHLRDGDALKAVAPYTARQMGRAVIMPNLKP
                     PVVSVADALAYKARIMAALPEGSAFEPLMTLYLTDNATPELVREAKAAGIVAFKLYPV
                     GATTNSDSGVTDLFKLIPVLEEMAKQGILFLVHGEVTDPEIDIFDREAAFIGRVMKPV
                     LAQVPNLKVVFEHITTAEAARLVLEAGDNVAASVTPQHLLLNRNDLLVGGVRPHHFCL
                     PILKRETHRQALVAAVTGEKAHKFFLGTDSAPHAKSAKENACGCAGMFSAMTAVELYA
                     EVFEKAGALDKLEAFASKNGARFYGIPENAGTITLVKQSQTVPASVPYGDGELVPMRA
                     GGEIGWMVQY"
     gene            complement(4926..5072)
                     /locus_tag="WHR98_001203"
     CDS             complement(4926..5072)
                     /locus_tag="WHR98_001203"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307889.1"
                     /translation="MPSEMRMSRPTALFLNIVCAACRFKNKPSGVQCRHFGRIAADLF
                     RNGC"
     gene            complement(5073..5297)
                     /locus_tag="WHR98_001204"
     CDS             complement(5073..5297)
                     /locus_tag="WHR98_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEZ2307890.1"
                     /translation="MNSETLDVTGLKCPLPILRAKKALAQMQQGDVLTVLATDGGAPG
                     DFEAFCRQTGHVLLDSSEQDGVFTLVVKHK"
     gene            5406..6017
                     /locus_tag="WHR98_001205"
     CDS             5406..6017
                     /locus_tag="WHR98_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNP1-like family protein"
                     /protein_id="HEZ2307891.1"
                     /translation="MRRTALLLLALTAGTSLAAGFNQKDTPINTRYRETPEEAAAREF
                     KEHTAKLPPLPDTHSDGWFDIYVDENYGKQPKILLDSLQIMPAPDGSIRYILNIRSDK
                     GYDNLTAEGIFCARFSIRFGNGKPSSYKVFGYGDTVNRRWIQPRNAEWKPIGGTLSRN
                     DALRTVLYQAFCEGDVPADTKGLVQRLKERAGRYAPSIKPHNK"
     gene            complement(6077..6949)
                     /locus_tag="WHR98_001206"
     CDS             complement(6077..6949)
                     /locus_tag="WHR98_001206"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEZ2307892.1"
                     /translation="MSWLDKILPPKIKNRSKDGSSNVPEGLWHKCPSCSATVYSTELQ
                     QNNQVCPKCNHHNPLSARQRLNLLLDEDGREEVAGNVKPTDPLKFKDGKKYPDRLSAA
                     RKLTGEDDALVVMKGKMNGLPVVVAAFEFRFIGGSMGSVVGERFVQGVRRAVADNCPF
                     VCVAASGGARMQEGVNSLMQMTKTSAALHLLTEKRLPFISVLTDPTMGGVSASFAFLG
                     DVVLAEPNALIGFAGPRVIEQTVRETLPEGFQRAEFLLEKGAIDQIVDRREMKRRISD
                     LITLLCRQDKVSAA"
     gene            complement(6986..7771)
                     /locus_tag="WHR98_001207"
     CDS             complement(6986..7771)
                     /locus_tag="WHR98_001207"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEZ2307893.1"
                     /translation="MSRIRQAFAALDGGKALIPYITVGDPDIRTTLALMHGMVANGAD
                     ILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVVLMGYLN
                     PVHKMGYREFAQEAAMAGVDGVLTVDSPVETIDPLYRELKDNGVDCIFLIAPTTTEDR
                     IKTIAELAGGFVYYVSLKGVTGAASLDTDEVSRKIEYLHQYIDIPIGVGFGISNAESA
                     RKIGRVADAVIVGSRIVKEIENNAGNEAAAVGALVKELKDAVR"
     gene            complement(8198..8290)
                     /locus_tag="WHR98_001208"
     tRNA            complement(8198..8290)
                     /locus_tag="WHR98_001208"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8254..8256),aa:Ser,seq:gct)
     gene            complement(8447..8644)
                     /locus_tag="WHR98_001209"
     CDS             complement(8447..8644)
                     /locus_tag="WHR98_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307894.1"
                     /translation="MAHGHKARADGLAQQPDKAAEANEEEYLTKALSQNLLSTLDVAL
                     ARFPEDAWFQEIKQDAQKHFA"
BASE COUNT         2130 a         2564 c         2020 g         1930 t
ORIGIN      
        1 tgcacagata atatcaaccc gtttttaaca aagatattcc cgattgaaac aaaatgccgt
       61 ctgaaacctg ttcggacggc atttgcgtaa agttcagcaa gaaaaactac aaacccagct
      121 cgcgcaggaa gcggatgtcg tccgcccaac cggatttgac tttgacccag accttcaaaa
      181 atactttggt atcaaacagt ttttccatat ccaaccgcgc ttcggtggaa attttcttca
      241 aacgctcccc gcctttgccg attaaaatcg ccttttggct ttccttatcg accaaaacgg
      301 cgatatagat gcggttcaaa ccgtcttcct cttcaaactg ctccacttcg acgttcatcg
      361 cataaggcaa ttcctcgccc aaatagcgga acaatttttc acgcacgatt tccatcgcta
      421 aaaaacgcgc cgatttgtcc gtaaccatat cttcgggata catcggcacg ctttcgggca
      481 gatacggctt aatcagctcc aacaggttgg caatccgcaa tccgtgtttc gcactgaccg
      541 cctccgccgc cgcaaattca aattcggcgc gcacttgggc aacaaacgcc tccagcgcgt
      601 aacggtcttt cgccttgtcc ttatcgattt tgttgaccac taaaatgacc ggcgtgtgct
      661 tgggcagttg tttcaacacg acgcggtcgg catcggtaaa acgcatcgct tccacgacga
      721 aaaccaccac atccacgccg ccgagtgcct cggtaacgtt ttgattcaaa cggtcgttga
      781 gcgcgttgcg gtggtcggtt tgaaaaccgg gcgtatcgac aaacacaaac tgcgcggtat
      841 cgtcggtata aatccccgtt acgcggttgc gcgtcgtctg cgcctttttg ctggtaatac
      901 tgattttctg accgatgaga tgattcatca gcgttgattt gccgacattc ggacggccga
      961 caatcgctac gaagccgcaa cggtatccgt cggcggcgcg ttcccctgca aggaaggttt
     1021 caatatccat attcgctttc atatccacat ttcagacggc atattcacgc gccgcctcat
     1081 ttctttttct tcttcagcgg cagcttctct tccagccatt tcaaagcctc tttcgccgct
     1141 tcctgctccg ccgccttgcg gctcgtccct ttggcacggc acacgaaacc cagttcgccc
     1201 aaatcgcagg aaatgacaaa catactgtcg ttggcatggc cgatttgctc ttcgatacgg
     1261 tatttcggca aggcgaaacg gcgcgcctgc aacgcctcct gcaaagcagt tttgccgtct
     1321 tttgcctgat tttggaaatc gactcgccgg acgcgttctg caaacaaatg gcgcaccacc
     1381 ttttccgccg tgttgaaatc cgcatcgaag ctgaccgccg caaacatcgc ctccatcgcg
     1441 tccgccagta tcgaaggccg tctgaagccg ccgctcttca actcgcccgc ccccaagtac
     1501 agaccgtcgc cgacattcat ttccgccgcc atttccgcca gcacgccctc attgaccaga
     1561 cttgccctca accgcgacaa ctcgccctcg gtcaacttcg gaaacgcgtc aaacagcatc
     1621 cgcgccaccg tataattcaa aatcgaatcg ccgacaaact caaaacgttc gttgtgcttc
     1681 gcatgatggc tcctgtgcgt caaagcctgc cgcaaaagcg aaatatcgcg gaacgcgtag
     1741 cccagtctct tctgtatcgc cgcgtgtgcc tgctgtttca aaacatcgtc tttcattacc
     1801 gtcttccgca aaaaacagcc cgaatgcgtt tccatactcc aaaaatacag aaacacctta
     1861 aggctgcaaa cggcgcacat tgtaccacca aaccgccgcc gtctgccgac aacgcacgaa
     1921 tcgtggtaaa atccgtaagt tttcccccaa cgtattcccg taatgaacgc atttgcacaa
     1981 gcactttcct cggcactcga ccgctgtatc gccaccaaca ccgtcgccaa acaaaaccgg
     2041 cccgtcggct tcctctaccg cgaagccccc gtttttgaaa acgacagcgg ctggcgtttc
     2101 ttcagcggcg acgagaccga cgaatacacc gacgatcccg acaacttcag catcgtcagc
     2161 ctcgccgaca tcgccaaaac caaccctgaa accgccgtac tgctttccca acctgaaggc
     2221 agcgcgtggg aattggcaga agacggcaca ttccaaaccg tcgccgactg gcaaccgcaa
     2281 gactgaaacc ttcagacggc attccgaaac cccgaatacc aaaggacacc caatgaacac
     2341 catcgccccc aacctcgacg gcaaacacct ccgcatcggc atcgtacagg cacgcttcac
     2401 caacgaaatc ggcagcgaaa tgctcaaagt ctgctgccgc accctccaag aattgggcgt
     2461 ggcagacgaa aacattaccg tcgccaccgt acccggcgcg cttgaaatcc ccatcgcgct
     2521 gatgaacttt gcctcttccg aaaagtttga cgcactgatt gccatcggcg tcgtcatccg
     2581 tggcgaaacc taccatttcg agctggtttc caacgaatcc ggagcagggg tcagccgcgt
     2641 cgcactcgac tacaacattc cgattgccaa tgccgtcctg accaccgaaa acgacgcgca
     2701 ggcaatcgaa cggattgaag aaaaagcctc ggatgccgcc aaagtcgccg tagaatgcgc
     2761 caacctcgtc aacctgctgc tcgaagaaca gtttgaagac gaagaataac aaacagggcg
     2821 tacaccgata cgccctttcc gtttcagacg gcataccgtg ccgcccaacc gtttcaagga
     2881 aaaatcatga aaacagcccg ccgccgttcc cgcgagcttg ccgtacaagc cgtttaccaa
     2941 tcccttatca accgcaccgc cgcgcccgaa attgctaaaa acatccgcga aatgtccgac
     3001 tttgccaagg cagacgaaga attgttcaac aaacttttct tcggcacgca aaccaatgcg
     3061 gcagagtaca tccgacaaat ccgcccactg ctcgaccgcg acgaaaaaga cctcaacccc
     3121 atcgaacgcg ccgtcctgct gaccgcctgc cacgagctgt ccgccatgcc cgaaacgccc
     3181 taccccgtca ttatcaacga agccatcgaa gttaccaaaa ccttcggcgg tacggacggg
     3241 cacaaattcg tcaacggcat cctcgacaaa ctcgccgccc aaatccgccc cgacgagccc
     3301 aaacgccgtt gatgcatcac aaatttaaag aaagttctat gtccttattt ctgctttctt
     3361 tgtttcgtca ttcccacgca ggtgggaatt tggttttttg aattttgggt atttcaaata
     3421 aattctgaaa cttcaatctc gtcattcccg cgcaggcggg aatccggttt tttgagttgc
     3481 tgccgttttt gataaactct agtcgcatcg aatttccaga ttcctgcctt cgtgggaatg
     3541 gcgaaatttg aaaattgtgg gaatttatcg gaaataaccg aaacgtaaca aactcaaacg
     3601 ccgtagacgt atcaatcagt cagcaacaca aatgccgtct gaaagccctt cagacggcat
     3661 tttgtttcca gcctatcaat actgtaccat ccagccgatt tcgccgcccg cgcgcatcgg
     3721 gacaagttcg ccgtcgccgt agggaacact tgcggggacg gtttggcttt gtttgacgag
     3781 ggtgatcgtg ccggcgtttt ccggaatgcc gtaaaacctt gcgccatttt tcgaggcaaa
     3841 ggcttcgagt ttgtccaacg cgcctgcttt ttcaaacact tcggcgtaaa gctcgacggc
     3901 ggtcatcgcg ctgaacatac cggcgcagcc gcaggcgttt tctttggcgg atttggcgtg
     3961 cggcgcggaa tctgtgccga ggaagaattt gtgcgccttt tcgccggtaa cggcggcgac
     4021 caatgcctga cggtgggttt cgcgtttgag tatgggcagg cagaaatgat gggggcgcac
     4081 gccgccgacc aagaggtcgt tgcggttaag cagcagatgt tgcggagtca cggaggcggc
     4141 aacattgtcg cctgcttcca aaacgaggcg ggcggcttcg gcggtggtga tgtgttcgaa
     4201 cacgacttta agattcggca cttgcgccaa aacgggtttc atcacgcgcc cgataaaggc
     4261 ggcttcgcgg tcgaagatgt cgatttcggg gtcagttact tcgccgtgaa caaggaacaa
     4321 aatgccctgt tttgccattt cttccaaaac ggggatgagt ttgaacaggt cggttacgcc
     4381 agaatcggaa ttggtcgtcg cgccgacggg gtagagtttg aaggcgacga tgccggcggc
     4441 tttggcttcg cgcacgagtt cgggcgtggc gttatcagtc aaataaagcg tcatcagcgg
     4501 ctcaaacgcg ctgccttcgg gcaacgccgc cataatgcgc gctttgtagg caagcgcgtc
     4561 ggctacgctg acgacgggcg gtttgaggtt gggcataatg acggcgcgcc ccatttggcg
     4621 ggcggtataa ggggcaacgg ctttgagcgc gtcgccgtcg cgcaggtgca ggtgcatatc
     4681 gtcggggcgg ataatggtca gggtttgcat ggttgttcct ttttaggttt tggctgcgtt
     4741 tgaatacccg gtcgattcca tccgtttgcc gggggaaagc cggttattcc gtccggtcgg
     4801 aaaccggttc cattggatga aaggcatttt gtccgactga ttgggttgca tcaacggaat
     4861 cttcaaacac agcctttaga ttttgattgt gcttgggttt tgcttctttg ccgacggcaa
     4921 ggcggttaac agccattccg gaacaaatcg gcggcgatac gcccgaaatg ccgacactgc
     4981 acgccggacg gtttgttttt gaaacggcac gcggcacata cgatattcaa aaacaacgcc
     5041 gtcgggcggg acatccgcat ttcagacggc atttatttgt gcttgacgac cagcgtgaac
     5101 acgccgtcct gttcggaaga atccaacagc acatgaccgg tttggcggca aaaagcctca
     5161 aaatcccccg gtgcgccgcc gtcggttgcc agaacggtca acacgtcgcc ctgctgcatt
     5221 tgcgccaaag cctttttcgc ccgcaaaatc ggcaggggac atttcaatcc ggttacgtct
     5281 aaagtttcgc tgttcatcgt ttgtaccgtt taaaaaatgg gaatcggggg gagattatac
     5341 cccagttgct tgcagccccc tttgccaacc cataaaataa cgccgttttc aatttggaga
     5401 aacttatgcg ccgcaccgcc ctcctgctgc tcgcactcac cgccggcacg tcccttgctg
     5461 ccggcttcaa ccaaaaagac acgccgatca acacccgcta ccgcgaaacg cccgaagaag
     5521 ccgccgcccg cgaatttaaa gaacataccg ccaaactgcc gccgctgccc gatacgcact
     5581 cggacggctg gtttgacatt tatgtggatg aaaattacgg caaacagccg aaaatcctgc
     5641 tcgacagcct gcaaattatg cccgcgcccg acggcagcat ccgctacatt ctcaatatcc
     5701 gctccgacaa aggctacgac aacctgactg ccgaaggcat attctgcgcc cgcttctcca
     5761 tcaggttcgg caacggcaaa ccttcctcct ataaagtgtt cggctacggc gacacggtca
     5821 accgccgctg gatacagccc cgaaacgccg aatggaaacc gataggcggt acattaagcc
     5881 gcaacgacgc actgcgcacc gtcctgtatc aggcattctg cgagggcgat gtacccgccg
     5941 acacgaaagg tttggtacaa cgcctgaaag aacgtgccgg acgctatgcc ccgtcgataa
     6001 agccgcacaa caaataacca gacacaaaaa taccgtctga aacatcggtt tcagacggta
     6061 ttcgattcat cagccatcaa gcggcggaaa ctttgtcctg acggcacaac agcgtaatca
     6121 aatcactgat gcgccgcttc atctcacgcc ggtcaacaat ctggtcgatt gcgcctttct
     6181 ccagtaaaaa ctcagcacgc tggaagcctt ccggcaaggt ttcccgtaca gtctgttcaa
     6241 taacgcgcgg tcccgcaaaa ccgattaggg cattgggttc agccaatacg acatcaccca
     6301 aaaatgcgaa gctggcggat acgccgccca tagtcggatc ggtcaacacc gatataaacg
     6361 gcaggcgttt ttccgtcagc aaatgcagcg cggcactggt tttcgtcatc tgcatcaatg
     6421 agttcacacc ctcctgcata cgcgcaccgc cggaagccgc cacacagacg aacggacaat
     6481 tgtcggcaac cgcccggcgg acgccctgta cgaatcgttc gcccacaacc gaacccatcg
     6541 aaccgccgat aaagcggaac tcaaacgcag caaccacaac gggcagaccg ttcatcttgc
     6601 ctttcattac caccaaagca tcatcttccc cggtcagctt gcgtgccgca ctcaaacgat
     6661 ccggatattt tttgccgtct ttaaacttca aaggatctgt cggtttgaca tttccggcaa
     6721 cctcctctct gccatcctca tccaaaagca gattcaggcg ttgtcgtgcc gacaacggat
     6781 tgtggtggtt gcatttcgga caaacctgat tgttctgctg caactcggtc gaataaacgg
     6841 ttgccgaaca agacggacat ttgtgccaca aaccctcggg aacattggaa gaaccgtctt
     6901 tgctgcggtt tttgattttg ggtggcagga ttttatctaa ccagctcatg gacaactcct
     6961 aaaatattta gaatgcgtga cagaatcagc gcacggcatc cttcaactct ttgaccaaag
     7021 caccgacggc cgcagcctcg ttgcccgcat tgttttcaat ctctttcaca atccggctgc
     7081 cgacaatgac cgcgtcggca acccggccga ttttgcgcgc gctttccgca ttgctgatgc
     7141 cgaaaccgac accgatggga atatcgatat actgatgcaa atactctatt ttacgcgaaa
     7201 cctcatccgt atccaaactt gccgcgcccg ttacgccctt gagcgaaaca taatagacaa
     7261 atccgcctgc cagctcggca atggttttaa tacggtcttc cgtcgtcgtc ggcgcaatca
     7321 ggaaaataca gtcgaccccg ttatccttca gctcgcgata gagcggatcg atggtttcga
     7381 caggggaatc caccgtcaac acgccgtcca cacccgccat tgcggcttcc tgagcaaact
     7441 cccgataacc catcttatgt acagggttca aatatcccat caaaacaacc ggcgtttgcg
     7501 tgtcggtttc acggaatttt ctgacgacat ccaagacatc gcgcagcgaa atcccgtttg
     7561 ccaacgcccg ctccgccgca cgctgaataa ccggtccatc cgccatcgga tcggaaaacg
     7621 gcacgcccaa ctccaaaata tccgcaccgt ttgcaaccat gccgtgcatc aatgccaaag
     7681 ttgtccgaat atcggggtcg cccaccgtaa tatagggaat caatgccttt ccgccatcca
     7741 aagcggcaaa agcctgccgg attctgctca tttgtctctt ccatcctatc ggcaaatatg
     7801 ccataaaaca caatcagtaa atttttccca gtataacatt tgcggtacgg ataggcgaat
     7861 acggcaaaca gaaaccacgc aaatcagagc cgccgtttga acgaggcgga aataaacggc
     7921 aagcatctcg gattatagtg gattaacaaa aatcaggaca aggcggcgaa gccgcagaca
     7981 gtacaaatag tacggagccg attcacttgg tgctccagca ccttagagaa tcgttctctt
     8041 tgagctaagg cgaggcaacg ccgtactggt ttttgttaat ccactataac aaaattcaga
     8101 atcaagacag ggcaatacca tactggtttt gcaccaaccc gctataaaat tgcataaaaa
     8161 aaatagacgc tgtaaaacac agcgtctatt ttttatctgg cggagtaaga gggattcgaa
     8221 ccctcgatgc aggttgaccc cacatgcttc cttagcaggg aagtgccttc agcctctcag
     8281 ccattactcc taaggaggct gtaactataa tcaacttttc cgataccgtc aaggaaaaac
     8341 agaaagcaaa tattaatctt ttgaaataaa ataagattta ccctgattat acccaatcag
     8401 gcacttcttt tcttcctgaa tggaaatatt cctgactgcc acatcctcaa gcaaaatgct
     8461 tttgtgcatc ctgtttgatt tcctgaaacc acgcgtcttc aggaaaacgt gcaagcgcga
     8521 catccaatgt tgacagcagg ttttgcgaca gggctttggt caggtattcc tcctcgttgg
     8581 cttctgccgc tttgtcgggc tgttgtgcca aaccgtcggc acgggctttg tgtccgtgtg
     8641 ccaa
//
LOCUS       DAWGNT010000076         8581 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.076, whole genome shotgun sequence.
ACCESSION   DAWGNT010000076 DAWGNT010000000
VERSION     DAWGNT010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8581
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.076"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(236..3088)
                     /gene="gcvP"
                     /locus_tag="WHR98_001210"
     CDS             complement(236..3088)
                     /gene="gcvP"
                     /locus_tag="WHR98_001210"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HEZ2307895.1"
                     /translation="MKLSELFNPDEFAARHLSFGDEAALLAAVGEKSMDDFVGNTVPQ
                     SIRMPSELDLPEALTEADALAKLKGIASKNMINKSYIGLGYYPTRVPNVILRNVLENP
                     GWYTAYTPYQAEIAQGRLEALLNFQQVCIDLTGFPVAGASLLDEATAAAEAMAMAHRV
                     GKVKSERFFVDARVYPQTLDVMKTRAKYFGFELVVGDFAQADEGEYFGALFQYVGKDG
                     DVQDLQDVIGRLKAKGTIVAVAADIMSLVLLKSPAELGADIALGNTQRFGVPMGFGGP
                     HAAYFAFKDEFKRSAPGRIIGVSKDASGKPALRMALSTREQHIRREKATSNICTAQAL
                     LANLAGMYAVYHGPEGVKRIANRIHALASAFADALVSDGLNVVHKVFFDTVTVDFGNK
                     EKADQVFAAALESGYNLRRVNDTQVAAAFHETSACEDLVDLYRAFTGKDAFAFADDVK
                     GRLNAELLRQDDILQHPVFNRYHTEHEMLRYLKKLEDRDLAMNRSMISLGSCTMKLNA
                     TAEMLPITWAEFSDIHPYAPEAQTVGYRELLADMENSLKAITGFDAISFQPNSGAQGE
                     YSGMLAIRRYQEAQGEAQRNICLIPKSAHGTNPATAAMLGLKVVVVDTDEHGNVNIDD
                     LKAKAEQHRDALSAIMITYPSTHGVYEEGIRDICRIIHENGGQVYMDGANLNAQIGIM
                     QPAEVGADVLHMNLHKTFCIPHGGGGPGMGPIGLKAHLAPFAPGHTLTDTHSASADQT
                     AVAAAAFGSASILPITWMYLTMMGKQGMEQATRWALLNANYVAKRLSEDYPILYTGKN
                     GRVAHECIVDLRPLKAESGITETDIAKRLMDYGFHAPTVSFPVAGTLMIEPTESESKA
                     ELDRFIAALKSIRREVQKVIDGEWPKDDNPLVNAPHTAADITGNWAHPYSREEAVFPL
                     PFVREHKFWPFVNRVDDVYGDRNLVCSCPPMENYED"
     gene            complement(3119..3481)
                     /locus_tag="WHR98_001211"
     CDS             complement(3119..3481)
                     /locus_tag="WHR98_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307896.1"
                     /translation="MTDRPSLLWIKPGQAEIMEYCEPEEASDPYATYRCANLMAVLPL
                     FVVILVLLNIVFPLPAYPLAWLVPAGFMVLGGGFPLSLPLVALLVLTCCILLARCPPL
                     SRLLCYPCPNHPMSKNSA"
     gene            3429..3659
                     /locus_tag="WHR98_001212"
     CDS             3429..3659
                     /locus_tag="WHR98_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009346381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HEZ2307897.1"
                     /translation="MISACPGFIHSRLGRSVMPSEPAGRLFQKTPYRCNFMRLYGVGF
                     ALQTAYASRSSLVFQSVHDYINNLGADKPLFI"
     gene            complement(3652..4293)
                     /locus_tag="WHR98_001213"
     CDS             complement(3652..4293)
                     /locus_tag="WHR98_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylesterase"
                     /protein_id="HEZ2307898.1"
                     /translation="MPSEKPMNRRIFLLGAGALLLTACGKKSARTHAKIPEGSTVLAL
                     GDSLTFGYGANPGESYPAQLQKLTGWNIVNGGVSGDTSAQALSRLPALLARKPKLVIV
                     GIGGNDFLRKVPKEQTRANIAKIIETVQKENIPAVLVGVPHITLGALFGHLSDHPLYE
                     DLSEEYGIPLFGGAWAEILGDNNLKSDQIHANGKGYRKFAEDLNQFLRKQGFR"
     gene            complement(4283..4834)
                     /locus_tag="WHR98_001214"
     CDS             complement(4283..4834)
                     /locus_tag="WHR98_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEZ2307899.1"
                     /translation="MNYCEFAASLPENTDNPNKHYHDTQYGFPIEDDNELFERLVLEI
                     NQAGLNWTLMLKKRQAFQTAFEGFDIDTVAAFDDTDRERLLADAGIVRNRLKIDAAIF
                     NARQIQALQQEYGSFKNWLDTHHPRSKDEWVKLFKKHFKFVGGEIVGEFLMSTGYLKG
                     AHAESCPVYRNTLKYHPKWLDAV"
     gene            complement(4838..5356)
                     /locus_tag="WHR98_001215"
     CDS             complement(4838..5356)
                     /locus_tag="WHR98_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HEZ2307900.1"
                     /translation="MRLFPIAAALTLAACGTVQSTQYFVLPDSRYIRPATQGSETAVK
                     VRLAEPLKRGGLVYQTDPYRINTAQNHVWADTLDDMLEAALSNAFNRLDSTRIFVPAS
                     RSGSTEKWTVYIDAFQGSYTGKTLISGYAVLPDGTNRPFHIETEQQGDGYAAMTAALE
                     QGLKQAAQQMVE"
     gene            complement(5356..7017)
                     /gene="pqiB"
                     /locus_tag="WHR98_001216"
     CDS             complement(5356..7017)
                     /gene="pqiB"
                     /locus_tag="WHR98_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HEZ2307901.1"
                     /translation="MTDNSPPPNGHAQARVRKNNTFLSAVWLVPLIALIAGGWLWIKE
                     IRNRGPVVTLLMDSAEGIEVNNTVIKVLSIDVGRVTRIKLRDDQKGVEVTAQLNADVS
                     GLIRSDTQFWVVKPRIDQSGVTGLGTLLSGSYIAFTPGKSDEAKDVFQVQDIPPVTAI
                     GQSGLRLNLIGKNDRILNVNSPVLYENFMVGQVESAHFDPSDQSVHYTIFIQSPNDKL
                     IHSASRFWLESGINIETTGSGIKLNSAPLPALLSGAISFDSPKTKNSKNVKSEDSFTL
                     YDSRSEVANLPDDRSLYYTAFFKQSVRGLTVGSPVEYKGLNVGVVSDVPYFDRNDSLH
                     LFENGWIPVRIRIEPSRLEINADEQSKEHWKQQFQTALNKGLTATISSNNLLTGSKMI
                     ELNDQPSSSPKLRPHTVYAGDTVIATQGGGLDDLQAKVVDLLDKFDKLPLDKTVAELN
                     GSLAELKSALKSANAALSSIDKLAGNPQTQNIPNELNQTLKELRTTLQGVSPQSPIYG
                     DVQNTLQSLDKTLKDVQPVINTLKEKPNALIFNSSSKDPIPKGSR"
     gene            complement(7010..8314)
                     /locus_tag="WHR98_001217"
     CDS             complement(7010..8314)
                     /locus_tag="WHR98_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HEZ2307902.1"
                     /translation="MKPFAENIPHSLRGNCRDEALPPHTVDCPECGCRADVPQLDRGE
                     AAFCPRCGYKLFRVGRHPFSAPPAYAATSLILMAFAYGMTYIEVGIPGAASVLSLPEM
                     MRLMVFQDYGFLAEVMFVLTFGAPVLFLLLCLYVYAALIRKQAYPALRLATRVMVRLR
                     QAMMVDVFFVSTLVAYIKLSSVAEVRFGSAFYLMFALSVMLIRTSVSVPQHWVYFQIG
                     RLTGDNAVQTASEGKTCCSRCLYFRDSAESPCGVCGAELYRRRPKSLSISSAFLTAAV
                     ILYFPANILPIMISSNPAATEVNTILNGIAYMWDEGDRLIAAVIFSASILVPVLKIAA
                     MSVLIASARFALPTGAKKLSHLYRITEAVGRWSMIDIFVIIILMCSFHTYAARVIPGS
                     AAVYFCLVVILTMLSAYYFDPRLLWDKRASDGIAFNETEKHD"
BASE COUNT         1921 a         2208 c         2431 g         2021 t
ORIGIN      
        1 tttgtccgtg tggaaatgac atcaaagggt gtgaataggc ttttcatctt tgaaatctgt
       61 ttgcacgatc ggatgaataa aaagtaggat gataaaaaag ctgatgtatg gatactggtt
      121 taactcattt gttttaaagt tatagtcgag atacgtgtat tggtgcaact ggtttgccgt
      181 tgatgaaaat gccgtctgaa aatgtttcag acggcatttt ttaagatatc aacagtcagt
      241 cttcataatt ttccatcggt gggcagctgc acacgagatt gcggtcgccg tacacgtcgt
      301 ccacgcggtt gacgaagggc caaaacttgt gttcgcggac gaacggcaac gggaagacgg
      361 cttcttcgcg ggaatacgga tgcgcccagt tgccggttat atctgcggcg gtgtgcggag
      421 cattcaccag cggattatcg tctttcggcc attcgccgtc gatgactttc tgcacttcgc
      481 ggcgaatgga tttcagggcg gcgataaagc ggtcgagttc ggctttgctt tcgctctcgg
      541 tcggctcgat catcagcgta ccggcaacag ggaaggaaac cgtcggcgcg tggaagccgt
      601 agtccatcag gcgtttggcg atgtcggttt cggtaatgcc actttcggct ttgagcggac
      661 gcaaatcaac gatacattcg tgcgcgacgc ggccgttttt gcctgtatac agaatcggat
      721 agtcttcgct cagacgtttg gcgacgtagt tggcgttgag caatgcccag cgtgttgcct
      781 gctccatgcc ttgtttgccc atcatggtca ggtacatcca agtaatcggc aggatggatg
      841 cagaaccgaa ggccgcagca gcaacggcgg tttggtcggc actggcgctg tgggtgtcgg
      901 tcaaagtgtg tcccggtgcg aacggagcca gatgggcttt caagccaatc ggacccatgc
      961 ccgggccgcc gccgccgtga gggatacaga aggttttgtg caggttcatg tgcaacacgt
     1021 ccgcgccgac ttcggcaggc tgcatgatgc cgatttgagc gttgaggttg gcgccgtcca
     1081 tataaacctg tccgccgttt tcatggatga tgcggcagat gtcgcggatg ccttcttcgt
     1141 acacgccgtg ggtggacgga taggtaatca tgatggcgga caaagcgtcg cggtgttgct
     1201 cggctttggc tttcaaatcg tcgatgttga cgttgccgtg ttcgtcggta tcgacgacga
     1261 cgactttcaa accgagcatg gcggcggtgg cggggttggt gccgtgggcg gatttgggaa
     1321 tcaggcagat gttgcgctgc gcttcgcctt gcgcttcctg atagcggcgg atggcaagca
     1381 taccgctgta ttcgccctgc gcgccggagt tgggctggaa ggaaattgcg tcaaagccgg
     1441 tgatggcttt caggctgttt tccatatcgg caagcaattc gcggtagccg acggtttgcg
     1501 cttcgggagc gtaagggtgg atgtcggaga actccgccca agtaatcggc agcatttccg
     1561 cagtcgcgtt gagtttcatg gtgcagctac cgagcgaaat catgctgcgg ttcatcgcca
     1621 aatcgcggtc ttcgagtttt ttcagatagc gcaacatttc gtgttcggtg tggtaacggt
     1681 tgaacacagg atgttgcaga atgtcatctt gacgcagcaa ttcggcgttc agacggcctt
     1741 tgacatcatc ggcaaatgcg aacgcatcct tgccggtaaa cgcgcggtac aaatcaacca
     1801 aatcttcgca tgccgatgtt tcgtggaatg cagccgcaac ttgagtatcg ttaacgcggc
     1861 gcaggttata gcccgattcc aaagcagcgg caaacacttg gtctgctttc tctttgttgc
     1921 cgaaatcgac ggtaacggta tcgaagaaga ccttatgaac cacattcagg ccgtctgaaa
     1981 ccagcgcatc ggcaaaggca gaagccagcg cgtgaatgcg gttggcgatg cgtttcacac
     2041 cttcagggcc gtggtaaacg gcgtacatac ccgccaagtt cgccagcaat gcctgcgcgg
     2101 tacaaatatt ggatgtcgct ttttcgcggc ggatgtgttg ctcgcgggtg gacaacgcca
     2161 tgcgcaaggc aggtttgccc gatgcgtctt tggatacgcc gatgatgcgg cctggagcgg
     2221 aacgtttgaa ctcgtcttta aacgcgaaat aagcagcgtg cggaccaccg aagcccatcg
     2281 gcacaccgaa gcgttgcgtg ttgcccaacg caatgtccgc gcccaattca gccggagact
     2341 tcagcaaaac caaactcatg atgtcggcgg caacggccac gatcgtgcct tttgctttca
     2401 gacggccgat aacgtcctgc aagtcttgca catcgccgtc tttgccgacg tattggaaca
     2461 gcgcgccgaa gtattcgccc tcgtcggctt gagcaaaatc gccgaccacc aattcaaagc
     2521 cgaaatattt ggcgcgggtt ttcatcacgt ccaaagtttg cggatacacg cgcgcatcca
     2581 cgaagaaacg ctcggatttc actttgccca cgcggtgcgc catcgccatc gcttcggcgg
     2641 cggcagtcgc ttcgtccagc aaagacgcgc ctgccacggg gaagccggtc aaatcgatac
     2701 acacttgttg gaagttcaac aaagcttcca aacgaccctg ggcgatttcc gcctgatacg
     2761 gcgtgtaggc ggtgtaccaa cccggatttt ccaatacgtt acgcaaaatc acgttcggca
     2821 cgcgggtcgg gtaatagcct aaaccgatat aggatttgtt gatcatgttt ttcgacgcaa
     2881 tgcctttcaa tttcgccaat gcgtccgctt cggtcagggc ttcgggcaaa tcgagttcgg
     2941 acggcatacg gatgctttgc ggcacggtat tgccgacaaa atcgtccatg cttttctcgc
     3001 cgacagcggc aagcaacgcc gcttcgtcgc cgaaactcaa atgccgcgcg gcaaattcgt
     3061 cggggttgaa cagttcggac agtttcattt ctactccttc gggtttgtag ggctgccatc
     3121 aggcagaatt tttagacatc ggatgattcg ggcaagggta gcacaaaaga cgggataatg
     3181 gcggacaacg cgccagcaga atgcagcagg tcaggacaag cagcgccaca agcggcagcg
     3241 ataagggaaa gccgccgccc aaaaccatga aacctgcagg caccagccaa gccaatggat
     3301 acgccggaag cggaaaaaca atattgagca gaaccaaaat cacgacaaac agcggcagca
     3361 ccgccatcag gttggcacac ctgtatgttg cgtacgggtc ggacgcttct tcaggttcgc
     3421 aatattccat gatttcagcc tgtcctggct ttatccacag caggctcgga cggtcggtca
     3481 tgccgtccga accggcaggc cgtctttttc aaaaaacgcc ataccgctgc aacttcatgc
     3541 ggctgtatgg cgtaggtttt gcacttcaga cggcatatgc gtcccgaagc agtttggtgt
     3601 tccagtcggt tcatgattat ataaacaact tgggtgcgga taaacctttg tttatctaaa
     3661 cccctgtttt ctcaaaaatt gattcaaatc ttcggcaaat ttccgatagc ctttgccgtt
     3721 ggcgtggatt tggtcggatt tcagattatt atcgcccaaa atttccgccc acgcgccgcc
     3781 gaacagcgga atgccgtatt cctcggacaa atcctcatac agcggatgat cgctcaaatg
     3841 cccgaacaac gcacccagtg tgatgtgcgg cacgccgacg aggacggcgg ggatgttttc
     3901 cttctgcacg gtttcgatga ttttcgcgat attggcgcgg gtctgctcct tgggaacttt
     3961 gcgcagaaag tcgttgccgc ctatgccgac aatcacaagc ttgggtttgc gtgccaacag
     4021 cgcgggcagg cgcgacaggg cttgcgcgga tgtatcgccc gatacgccgc cgttgacaat
     4081 attccaaccc gtcagttttt gcagttgcgc ggggtaggat tcgccggggt ttgcgccgta
     4141 gccgaaggtg agcgaatcgc ccaaggcaag tacggtgctt ccttcgggaa ttttggcgtg
     4201 ggttcgggcg gattttttgc cgcaggcggt aagcagcaac gcgcccgcgc cgaggaggaa
     4261 gattcttctg ttcattggtt tttcagacgg catcgagcca tttcgggtgg tatttcaggg
     4321 tgttacggta aaccggacag ctttcggcgt gcgcgccttt gaggtagccg gtactcatca
     4381 gaaattcgcc gacgatttcg ccgccgacga atttgaaatg ttttttaaag agtttaaccc
     4441 attcgtcttt gcttcgcgga tggtgcgtgt cgagccagtt cttgaacgag ccgtattctt
     4501 gttgcaacgc ttggatttgc cgtgcattga aaatggcggc atcgattttc aggcggttgc
     4561 ggacaatgcc cgcgtcggca agcaggcgtt cgcggtcggt gtcgtcgaag gcggcaaccg
     4621 tatcgatgtc gaaaccttca aatgccgtct gaaacgcctg ccgcttcttc agcatcagcg
     4681 tccagtttaa tcctgcctga ttgatttcca acaccagccg ctcaaacaat tcattgtcgt
     4741 cctcaatcgg aaaaccgtat tgcgtgtcgt ggtaatgttt gttcgggtta tcggtgtttt
     4801 cgggaagtga ggcggcaaat tcgcaatagt tcacggttta ctcgaccatc tgttgcgccg
     4861 cctgtttcag tccctgttcg agtgcggcgg tcatggcggc gtagccgtca ccctgctgtt
     4921 cggtttcgat atggaaaggt ctgttcgtac cgtcgggtag gacggcgtag ccgctgatga
     4981 gggttttgcc cgtgtagctg ccttggaatg cgtcgatata gaccgtccat ttttcggtac
     5041 tgccgctgcg tgaggcagga acaaagatgc gtgtgctgtc caaacggttg aatgcattgc
     5101 tcaacgccgc ttcgagcata tcgtccaagg tgtctgccca aacgtggttt tgtgcggtgt
     5161 tgatgcggta ggggtcggtt tgatagacca gtccgccgcg tttgagcggc tcggcaagac
     5221 ggactttgac ggcggtttcg ctgccttgcg ttgcaggacg gatgtagcgg ctgtcgggca
     5281 acacgaaata ttgtgtgctt tgcacagtac cgcaggcggc aagcgtcagg gcggcggcaa
     5341 tcgggaaaag gcgcattatc ggcttccttt cgggatgggg tctttgctgc tgctgttgaa
     5401 aatcagcgcg ttgggttttt ctttcaaagt attaattacg ggttgaacgt cttttaaagt
     5461 tttgtccaaa ctttgcagcg tattttgtac gtcgccgtag ataggcgatt gcggcgatac
     5521 gccttgcagg gttgtgcgca actctttcag ggtttggttc agttcgttcg gaatgttttg
     5581 cgtctgcgga ttgccggcca gtttgtcaat ggagcttagg gcggcattgg cagatttgag
     5641 tgcggacttg agctcggcaa gcgaaccgtt caattcggca accgtcttat ccaaaggcag
     5701 tttgtcgaac ttgtccagca aatccaccac tttcgcctgc aaatcgtcca aaccgccgcc
     5761 ttgtgtagcg atgacggtat cgcctgcata aacggtatgc ggtcgcagct tgggcgaaga
     5821 cgaaggctga tcgttcaact caatcatttt gctgccggtc agcaggttgt tgctggagat
     5881 ggtggcggtc aggcctttgt ttaaagccgt ctgaaattgt tgtttccaat gctctttgct
     5941 ttgttcgtcg gcattgattt ccaaacggga aggctcaatg cggatgcgca cgggaatcca
     6001 gccgttttca aacaggtgca ggctgtcgtt gcggtcgaaa taaggaacgt cggaaaccac
     6061 gccgacattc agccctttgt actcgacggg cgaaccgacg gtcaggccgc gcacggattg
     6121 tttgaaaaac gcggtgtagt acagcgagcg gtcgtcaggc aggttggcga cttcgctgcg
     6181 gctgtcgtaa agcgtgaagc tgtcttcgct tttgacgttt ttactgtttt tggttttcgg
     6241 cgaatcaaat gaaatcgcgc ccgacagcag ggcaggcaga ggggcggaat tgagtttgat
     6301 gccgctgcct gtggtttcga tattgatgcc gctttccagc caaaaacggc tggcggaatg
     6361 aatcagtttg tcgttggggc tttggatgaa gatggtgtaa tgcacgcttt ggtcggacgg
     6421 gtcgaaatgc gcgctttcga cttgcccgac cataaagttt tcatacaaaa cagggctgtt
     6481 gacgttgagg atgcggtcgt ttttaccaat caaattcaag cgcagcccgc tttgcccgat
     6541 ggcggtaacg ggcggaatgt cctgcacttg gaacacgtct tttgcctcgt cgcttttgcc
     6601 gggtgtaaag gcgatgtacg aacccgaaag cagcgtaccc aaaccggtta cgccgctttg
     6661 gtcgatacgc ggcttgacca cccaaaactg ggtatcgctg cggatgaggc cggatacgtc
     6721 cgcattgagt tgggcggtta cttccacgcc tttttggtcg tcgcgcagtt tgattcgggt
     6781 aacgcgtccg acatcgatgc tcaatacttt gatgaccgta ttgttgacct caatgccttc
     6841 cgcgctgtcc atcaagagcg taaccacagg ccccctgttg cggatttcct taatccacag
     6901 ccagccgccg gcaatcagcg cgatcagcgg aaccagccag acggcagaga ggaaggtgtt
     6961 gtttttgcgg acgcgtgctt gggcgtgtcc gtttggagga gggctgttgt cagtcatgtt
     7021 tttccgtttc attgaaagca atgccgtctg aagcgcgttt gtcccaaagc aggcgcgggt
     7081 cgaaataata ggcggacagc atcgtcagaa tcacgaccag gcagaaatag actgccgcac
     7141 tgcccggaat gacgcgcgcg gcataagtgt ggaacgaaca catcaaaata ataatcacaa
     7201 aaatatcaat catcgaccag cggccgaccg cttcggtgat gcggtagagg tgcgacaatt
     7261 tctttgcgcc cgttggcaaa gcgaagcggg cggacgcaat caaaaccgac attgccgcaa
     7321 tcttcagtac cggcaccaaa atactcgcgc tgaaaataac cgccgcaatc agcctgtcgc
     7381 cctcgtccca catataagcg atgccgttaa ggatggtatt gacctccgtg gcggcaggat
     7441 tggacgaaat cataatcggc aggatattgg cagggaaata caaaataacc gccgccgtca
     7501 gaaacgccga cgaaatactc agacttttcg gccgtcggcg gtacagttcc gcaccgcaca
     7561 cgccgcaggg ggattcggca ctgtcgcgga aatacaggca gcggctgcaa caggttttac
     7621 cttccgatgc cgtctgaacc gcattatccc ccgtcagccg cccgatttga aaatacaccc
     7681 aatgctgggg aaccgatacc gaagtccgaa tcagcataac cgacagcgcg aacatcagat
     7741 aaaacgccga tccgaagcga acctctgcca cagacgagag cttgatatac gccaccaaag
     7801 tggaaacaaa aaacacatcc accatcatcg cctgtctcaa gcgcaccatc acacgcgttg
     7861 ccaaacgcag cgcaggatac gcctgtttcc gtatcagcgc ggcatagaca tacaggcaca
     7921 gcagcagaaa cagaaccggc gcgccgaagg tcagcacaaa catcacttcg gccaaaaaac
     7981 cataatcctg aaacaccatc aggcgcatca tctcgggcag cgaaaggacg gatgccgcac
     8041 ccggtatccc gacctcgata tacgtcatac cgtaagcaaa cgccatcaaa atcagcgaag
     8101 tcgccgcata agcgggcggg gcggaaaaag gatgcctgcc caccctgaag agcttatagc
     8161 cgcagcgcgg gcagaacgcc gcctcccccc tgtccaattg cggcacatcc gcgcggcagc
     8221 cgcattccgg gcaatctacc gtatgcggcg gcagggcttc gtcgcggcag ttgccgcgaa
     8281 ggctgtgggg gatattttcg gcaaacggct tcatcgggaa agtggcaaat ataagtggcg
     8341 gcattataaa ggaaaaaagc aacgcaccca atcaggatgc aaaaccggca ggttcggcag
     8401 tatgaacaaa cccttggtgt ccggcaaaaa tattttttga gcggctgtcc gccgactgcc
     8461 gaacccattt gataaaatcc cgattctgta aagaatagta aaatacctgc ttaaaaacat
     8521 cacgcaaatg atattttttc caaaaatatg tgataataaa tttcgtttat gattctttat
     8581 t
//
LOCUS       DAWGNT010000077         8578 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.077, whole genome shotgun sequence.
ACCESSION   DAWGNT010000077 DAWGNT010000000
VERSION     DAWGNT010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8578
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.077"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            357..1280
                     /locus_tag="WHR98_001218"
     CDS             357..1280
                     /locus_tag="WHR98_001218"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEZ2307903.1"
                     /translation="MLQRTLAKSISVTGVGLHSGERVALTLHPAPENSGISFRRTDLD
                     GEMGEQIKLTPYLINDTRLSSTIVTDKGVRVGTIEHIMSALSAYGIDNALIELNAPEI
                     PIMDGSSLPFIYLLQDAGVVDQKAQKRFLKILKPVEIKEAGKWVRFTPYDGFKVTLTI
                     EFDHPVFNRSSPTFEIDFAGKSYIDEIARARTFGFMHEVEMMRAHNLGLGGNLNNAIV
                     IDDTDVLNPEGLRYPDEFVRHKILDAIGDLYIVGHPIVGAFEGYKSGHAINNALLRAV
                     LADETAYDRVEFADSDDLPDAFHELNIRTCG"
     gene            2660..4108
                     /gene="gnd"
                     /locus_tag="WHR98_001219"
     CDS             2660..4108
                     /gene="gnd"
                     /locus_tag="WHR98_001219"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019269816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HEZ2307904.1"
                     /translation="MKGDIGVIGLAVMGQNLILNMNDCGFKVVAYNRTIGKVDEFLNG
                     AAKGTDIIGAYSLQDLVDKLAKPRKIMMMVRAGSVVDDFIEQLLPLLEEGDIVIDGGN
                     ANYPDTTRRTHYLAEKGILFVGAGVSGGEEGARRGPSIMPGGDKRAWEAVKPIFQAIA
                     AKTPQGEPCCDWVGKDGAGHFVKMVHNGIEYGDMQLICEAYQFMKDGLGLSYDKMHRV
                     FAEWNKTELDSYLIEITAAILGYKDEGGEPLVEKILDTAGQKGTGKWTGINALDLGIP
                     LTLISEAVFARCVSSFKEQRVQTGKLFARTVTPVEGGKQEWVEALRQALLASKIISYA
                     QGFMLIREAGESYGWDLDYGNTALLWREGCIIRSAFLSNIRDAYENNPDLVFLGADPY
                     FKNILENCLPAWRKVVAKAVECGIPMPCMASAITFLDGYTTERLPANLLQAQRDYFGA
                     HTYERTDKPRGEFFHTNWTGKGGDTASTTYDI"
     gene            4171..5442
                     /gene="waaA"
                     /locus_tag="WHR98_001220"
     CDS             4171..5442
                     /gene="waaA"
                     /locus_tag="WHR98_001220"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HEZ2307905.1"
                     /translation="MFQWLYDVLWLLAPIWIRRYLDKRSGSAPAYRAHRDERFGKPYP
                     NPVTGAVWIHAVSVGETRAAQPLIRELRQRFPDAPLLMTQMTPTGRETAQVLFPDAQC
                     RYLPYDKKTWVRQFLREHRPMFGILMETEIWPNLMTECRRAGVPLFLANARLSEKSLS
                     GYLKVRRLIRPAAASLTGCLAQTEADAARLAKLGAASVQVCGNTKYDLMPSEQMKTLA
                     GQFEKRIGGRPVAVCGSTRVYRGEDEAEKLLAAWQQYRGDALLVVVPRHPEHFQTVFE
                     TAKRFGFKVQRRSDGLPVEPDTQVWIGDSMGELYAYYLCADVAFVGGSLVDSGCQNII
                     EPLSCGVPTIFGFSTYNFSEACRHALASGAAVQVESADAWREAVEKNLSAEGGGMQMQ
                     ARVDGFIAQHRGAGARIAKAVREAVCGHRGR"
     gene            5483..5932
                     /locus_tag="WHR98_001221"
     CDS             5483..5932
                     /locus_tag="WHR98_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family copper resistance protein"
                     /protein_id="HEZ2307906.1"
                     /translation="MSIYAVAHIVHLYCAIAFVGGVFFEVLVLSVLHTGRVSCEARRE
                     VEKAMSYRAVRVMPFVVGLLFASGIVMAANRYLSILGEPFATSFGTMLTLKILLAFSV
                     LAHFAIAVVKMARSTLTVGWSKYIHTVVFIHMLLIVFLAKAMFYISW"
     gene            5965..6939
                     /locus_tag="WHR98_001222"
     CDS             5965..6939
                     /locus_tag="WHR98_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEZ2307907.1"
                     /translation="MTEYPGIGSPLFYGVFFAAVLVMIALDMFSLKKNGSHKVGVKEA
                     LAWSGLWVAVSCLFAGWLYFELAGNLGYGAAVAKEKVLEFFTGYILEKSLAVDNIFVF
                     LMIFGYFKVAPQFQHRVLLYGVLGALVLRTVMIFVGAALVQQFEWILYLFGAFLLYTG
                     IHMMKPEGDEKEDLANSRLLNAVKKVVPVGTEFHGEKFFTVENGKKIATPLFLVLVMI
                     ELSDVVFAVDSIPAVFAVTTDPFIVLTSNIFAILGLRAMYFLLADVAERFIFLKYGLA
                     FVLSFIGVKMLVMHWVHIPISVSLSVVFGALGASILTSLIYTKKQPDK"
     gene            7008..7083
                     /locus_tag="WHR98_001223"
     tRNA            7008..7083
                     /locus_tag="WHR98_001223"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7041..7043,aa:Lys,seq:ttt)
     gene            7303..8556
                     /gene="murA"
                     /locus_tag="WHR98_001224"
     CDS             7303..8556
                     /gene="murA"
                     /locus_tag="WHR98_001224"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEZ2307908.1"
                     /translation="MDKLKISANGPLNGEITVSGAKNAALPLMCAGLLTSGTLRLKNV
                     PMLADVKTTQKLLQGMGARVLTDNISEFEINGGTVNNTCAPYELVRTMRASILVLGPT
                     LARFGEAQVSLPGGCAIGSRPVDQHLKGLEAMGAEIVIEHGYVKAKGKLKGTRVAMDV
                     VTVGGTENLLMAATLAEGTTVLENCAIEPEVVDLAECLVKMGAKISGIGTSTMIVEGV
                     DELHGCEHSVVPDRIEAGTFLCAVAITGGRVVLRNAAPKTMEVVLDKLVEAGAVIEAG
                     DDWIAIDMRQRPKAVDIRTVVHPGFPTDMQAQFMALNAVAEGSCRVVETIFENRFMHV
                     PELNRMGANITTEGNTAFVQGVEQLSGAVVKATDLRASASLVIAGLAARGETVVEQIY
                     HLDRGYENIEKKLGSVGAKIERVSG"
BASE COUNT         2002 a         2060 c         2401 g         2115 t
ORIGIN      
        1 taagtttcaa aatttattct aaataactga aactcaacga actagattcc cgcttttgcg
       61 ggaatgacga attttaggtt gctgtttttg gttttctgtt ttggttttat gtccttgtgg
      121 gaatgacggt ttacgcgaaa atgccgtccg aaaggttttc ggacggcatt ttttgcgttt
      181 ttcaggaggg ggcgggttcg tcgccttgtc ttgatttttg ttaatccact atacattttt
      241 atgcggctta cgtattgaaa acggatacat tggcaaatac tatggaaaaa catagcctgt
      301 ttttccggtt ttatcgtatt attccaaaac ttaccccatt gataagggag cggtttatgc
      361 tgcaaagaac tttggcgaaa tccatcagcg ttaccggagt cgggctgcat tcgggcgaac
      421 gcgtcgcgct gaccctgcac cccgcgcctg aaaacagcgg gatttccttc cgccgtaccg
      481 atttggacgg cgagatgggc gaacaaatca aactgacccc ttatttgatc aacgataccc
      541 gcctttcctc caccatcgtt accgacaaag gcgtgcgcgt cggcacgatc gaacacatta
      601 tgtccgcgct gtccgcctac ggtatcgaca acgcactgat tgagctgaac gcgcccgaaa
      661 tcccgattat ggacggctcc agcctgccgt ttatttacct tttgcaagat gcgggcgtgg
      721 tcgatcaaaa ggcgcaaaag cgttttttga aaatcctcaa gcctgtcgaa atcaaagaag
      781 cgggcaaatg ggtgcgcttt acgccgtatg acggctttaa ggtaacgctg accatcgaat
      841 tcgaccatcc ggttttcaac cgcagctcgc ccacttttga aattgatttc gccggcaaat
      901 cctacatcga cgaaatcgcg cgcgcgcgca ctttcggctt tatgcacgaa gtggaaatga
      961 tgcgcgccca caatctgggt ttgggcggca atttgaacaa cgccatcgtg attgacgaca
     1021 cggatgtcct gaatcctgaa ggcttgcgct atcccgatga gtttgtgcgc cacaaaatcc
     1081 ttgatgccat cggtgatttg tatatcgtcg gacatccgat tgtcggcgcg tttgaaggct
     1141 acaaatcggg acacgccatc aacaacgcac tcttgcgcgc ggttttggca gacgaaacgg
     1201 cttacgaccg ggtggaattt gccgacagcg atgatttgcc cgacgcattt cacgagctga
     1261 acatcagaac ttgtggataa cgcccccttt tccaaacaaa tgccgtccga atcgataaaa
     1321 tacccgctcc ggacggcatt tttatatacg tatccccatc cgaaacttta tagtggatta
     1381 acaaaaacca gtacggcatt gccttacctt gtcctgattt ttgttagtcc actataaaga
     1441 ccgtcgggca tctgcagccg tcattcccgc gcaagcggga atctaggtct gtcggtgcag
     1501 aaacttatcg ggtaaaacgg tttcttgaga ttttgcgttc tagattccca cttccgtggg
     1561 aatgacggcg gagcggtttc tgttttttcc ggtaaattcc taaaacttaa attttcgtca
     1621 ttcccgcgca ggcgggaatg acgggatttg aggtttctgt ttttgtggga atgacgggat
     1681 ttgaggtttc tgtttttgtg ggaatgacgg gatgtaggtt cgtgggaatg acgtggtgca
     1741 ggtttccgta tggatggatt cgtcattccc gcgcaggagg gaatctagaa cgtaaaatct
     1801 aaagaaaccg tgctgtaaac ggcagactga tgccgtcatt cccacgaaag tgggaatcca
     1861 gaacgtaaaa tctaaagaaa ccgttttccc gataagtttc cgtaccgaca aggctggatt
     1921 cccgcctgcg cgggaatgac ggcggagcgg tttctgtttt ttctgataaa ttcctaaaac
     1981 ttaaaatttc atcattccca ctttcgtggg aatgacggga tgtaggttcg tgggaatgac
     2041 gcggtacagg tttccgttac gtatccccat ccgaaacttt acttatacac aagcaatcca
     2101 aagttatctg actgaaatat tgtgagattt acccgcaaat ctcatttttt ccaccactta
     2161 tacacaaatt cggatgcgca ctctgccgat atgcagaaat aagacattcg tgccgacacc
     2221 tgaccatttc cacacgttcc aaacacactt tcctctcaaa cctccacagt attccggttc
     2281 ttaaagacat cggcagccat tcggtaaaga aaagcggtat gtcatctgca caacaggcaa
     2341 actatccaca aaaactattc ttcacgaaaa acaatccaca ggtatgcaca aaagggaatc
     2401 cgccttaccg acaccctaaa aaaaagaaat cctgatgatt tttaaaataa aaaaaagtta
     2461 cccacagaaa atttctccta tcaatataat catcgtttta ttatttaaat tttatattta
     2521 tttataagcc ttcagggaaa cggcacggga aagcgtaaag gcatcttttc aaaaaattaa
     2581 aaagttaagg attgttaaac aagtgtaaat caggtagagt tgcggtcgat aaattaaatc
     2641 tataacggag cttcctgcaa tgaaaggcga tattggcgta atcggtttgg cggttatggg
     2701 gcaaaacctg attttgaata tgaacgattg cggatttaag gtggttgcct acaaccgaac
     2761 aatcggtaag gtggacgaat ttttaaacgg cgcggctaag ggaacggata ttatcggcgc
     2821 gtattccctg caagacttgg tcgataagct ggcaaaaccg agaaaaatca tgatgatggt
     2881 tcgcgcaggt tcggtggttg acgactttat cgaacaactg cttccgctgt tggaagaagg
     2941 cgatatcgtt atcgacggcg gcaatgccaa ttatcccgac acgacacggc ggacacatta
     3001 ccttgccgaa aaagggattt tgttcgtcgg cgcgggcgta tccggcggcg aagaaggcgc
     3061 gcggcgcggg ccatccatta tgccgggcgg ggataagcgc gcttgggaag cggtcaaacc
     3121 gatttttcag gcgattgccg ccaaaacgcc gcagggcgaa ccgtgttgcg actgggtcgg
     3181 caaggacggc gcgggacatt ttgtcaaaat ggtgcataac ggcatcgaat acggcgatat
     3241 gcagttgatt tgcgaggctt accagttcat gaaagacggt ttgggattgt cctacgataa
     3301 aatgcaccgc gtgtttgccg agtggaacaa aaccgagctg gattcttatc tgattgaaat
     3361 cacagcggca attttgggct ataaagatga aggcggcgaa ccgctggtcg agaaaatcct
     3421 cgatacggca gggcaaaaag gcacgggcaa atggacgggt atcaatgctt tggatttggg
     3481 tattccgctg acgctgattt ccgaagcggt attcgcccgc tgcgtttcgt cgttcaaaga
     3541 acagcgcgtg cagaccggca agctgttcgc ccgaaccgtt acgcccgtcg aaggcggcaa
     3601 acaagaatgg gtcgaggcgt tgagacaggc cctgcttgca tctaaaatca tttcctacgc
     3661 acaaggcttc atgctgatcc gcgaagcggg cgaaagttac ggctgggatt tggactacgg
     3721 caacactgcg ctgctgtggc gcgaggggtg catcatccgc agcgcattct taagcaatat
     3781 ccgcgacgcg tatgaaaaca atcccgattt ggtgttcttg ggtgcggatc cgtatttcaa
     3841 aaatattttg gaaaactgcc tgccggcgtg gcgcaaggtg gttgccaagg cggtcgaatg
     3901 cggcatccct atgccttgca tggcatcggc gattacgttc ttggacggct acacgaccga
     3961 acgtctgcct gccaacctct tgcaggcaca gcgcgactac ttcggcgcgc acacttacga
     4021 acgcaccgac aaaccgcgcg gcgagttttt ccataccaac tggacgggca agggcggaga
     4081 taccgcttcg acaacctacg atatttgatt ccgttgccga aatgccgtcc gaaccgttcg
     4141 gacggcattt gttttgcagg aaatagaaag atgttccaat ggctttatga tgtattgtgg
     4201 ctgcttgcgc cgatatggat acggcgttat ttggacaaac gctccggaag tgcccctgca
     4261 tatcgggcgc atcgggacga gcgtttcggc aagccgtatc cgaatcccgt taccggagcg
     4321 gtttggatac acgccgtttc ggtcggggaa acgcgtgccg cccaaccttt gatacgcgag
     4381 ttgcggcagc gttttcccga tgcgccgctg ctgatgacgc agatgacccc gacgggacgg
     4441 gaaaccgcgc aagttctgtt tcccgatgcg caatgccgct atcttccgta tgacaaaaaa
     4501 acgtgggtac ggcagttttt gcgcgaacac cgcccgatgt tcggcatttt gatggaaacc
     4561 gaaatctggc ccaatctgat gacggagtgc cggcgcgcgg gtgtgccgct gtttttggcg
     4621 aatgcgcggc tgtcggaaaa atcgttgagc ggttatctga aagtccgccg cctgatccgt
     4681 cctgccgccg cttcgctgac gggttgtctg gcgcagacgg aggcggatgc ggcgcggttg
     4741 gcgaaattgg gcgcggcatc cgtgcaggtg tgcggcaata ccaaatacga cctgatgccg
     4801 tcggaacaga tgaaaacgct ggcggggcag tttgaaaaac gcatcggagg caggccggtt
     4861 gccgtgtgcg gcagcacgcg cgtttatcgg ggtgaagacg aggcggaaaa actgctggcg
     4921 gcgtggcaac aatatcgcgg cgatgcgctg ctggtcgtcg tgccgcgcca tcccgagcat
     4981 tttcagacgg tatttgaaac ggcaaaacgc ttcgggttta aggttcagcg gcgcagcgac
     5041 ggtttgccgg tcgaacctga tacgcaggtg tggataggcg acagtatggg cgagctgtat
     5101 gcgtattacc tgtgcgccga tgtcgctttt gtcggcggca gtctggtcga ttcgggctgt
     5161 cagaacatta tcgaaccgct ttcctgcggc gttccgacga tattcggctt ttcgacctac
     5221 aatttttccg aagcctgccg acacgccttg gcatcgggtg cggcggttca agtcgaatcg
     5281 gcggacgcgt ggcgggaagc cgttgaaaaa aacttatctg ctgagggggg cggaatgcag
     5341 atgcaggcgc gcgtggacgg ctttatcgca caacatcgcg gagcgggcgc gagaattgcc
     5401 aaggcggtac gagaagcggt atgcggacat cgggggcgat agtgatacaa tctgtatccg
     5461 agttttccgg ttggagcatc gtatgagtat ttatgccgtc gcgcacatcg tccatctgta
     5521 ttgcgctatt gcctttgtcg gcggcgtgtt ttttgaagtg ctggttttgt ccgtcctgca
     5581 tacgggacgg gtgtcgtgcg aggcgcggcg cgaagtggaa aaggcaatgt cttaccgcgc
     5641 cgtcagggtg atgccgtttg tggtcggact gctgttcgcc agcggcatcg tgatggcggc
     5701 aaaccgctat ctttctatat tgggcgaacc gtttgccact tccttcggta cgatgctgac
     5761 gctgaaaatc ctgttggcgt tcagcgtgtt ggcgcacttc gccatcgccg tcgtcaaaat
     5821 ggcgcgttcc acactgaccg tcggctggtc gaaatacata cacaccgtcg tctttatcca
     5881 tatgctgctg attgtctttt tggcaaaagc gatgttttat atcagctggt aacacaatta
     5941 catttcaaat caggagattg aaccatgaca gaatatcccg gcatcgggtc gccgttgttt
     6001 tacggcgttt tttttgcggc agtgctggtc atgattgcct tggatatgtt ttcgctgaag
     6061 aaaaacggca gccataaagt cggcgtcaaa gaagccttgg catggagcgg cttgtgggtt
     6121 gccgtatcct gcctgttcgc gggctggctg tatttcgaac tcgccggcaa tctcggctac
     6181 ggcgcggcag tcgcaaaaga aaaagtattg gaattcttta ccggctacat tttggaaaaa
     6241 tcgttggcag tcgacaatat tttcgtgttc ctgatgatat tcggctactt caaagtcgca
     6301 ccacagtttc agcaccgcgt gctgctgtac ggcgtattgg gcgcattggt attgcgcact
     6361 gtcatgattt tcgtcggcgc ggcactggtt cagcagtttg agtggattct gtatctgttt
     6421 ggcgcgttcc tgctctatac tggtatacac atgatgaagc ccgaaggcga tgagaaagag
     6481 gatttggcaa acagcaggct gctgaatgcc gtcaagaaag tcgttccggt cggcacggaa
     6541 tttcacggcg agaaattttt taccgtcgaa aacggcaaaa aaatcgccac gccgctgttt
     6601 ttggtgctgg tcatgattga attgagcgat gtcgtgtttg ccgtggacag tattcccgcc
     6661 gtctttgctg ttaccaccga tccgtttatc gtgctgacct ccaatatttt cgctattttg
     6721 ggtttgcggg cgatgtattt cctgctggcg gatgtggcgg aacgctttat cttcctgaaa
     6781 tacggcttgg cattcgtgtt gagttttatc ggtgtgaaaa tgctggtaat gcattgggtg
     6841 catatcccga tttccgtttc gctgtcggtc gtgttcggcg cgttgggtgc atcgatactg
     6901 acctcgttaa tttatacgaa aaaacagcct gataaataaa atgccgtctc aacgccgaca
     6961 aaatggttga cagcatcagg cttgatgtat agaatttcga gcttgtcggg tcgttagctc
     7021 agccggtaga gcagcggact tttaatccgt tggtcgagcg ttcgaatcgc tcacgaccca
     7081 ccagataaaa caaaaaaagc tgagttttca aaactcggct ttttttgttt tccgacaatc
     7141 cttgttcgga aagcgcggca tttcgtcaaa ttctttggtg cggcttccgt atttttcccg
     7201 aaaatccctt ataattccgc ctctgcaacc ttcatcgggt gatgctttat gcgttgtccc
     7261 gagaattgaa atattacaag tacccaccag gaaagaacaa acgtggacaa actgaaaatc
     7321 tccgcaaacg gcccgctcaa cggggaaata acggtctcgg gcgcgaaaaa cgcggcattg
     7381 ccgctgatgt gcgcgggttt gctgacatcg ggtacgttgc gcctgaaaaa cgtccctatg
     7441 ctggcagatg tcaaaaccac gcaaaaactg cttcagggga tgggcgcgcg cgtcctgacc
     7501 gacaatatca gcgaatttga aatcaacggc ggtacggtca acaacacgtg cgccccttac
     7561 gagttggttc ggacgatgcg cgcttcgatt ttggtgctgg gcccgacgct ggcgcgtttc
     7621 ggcgaggcgc aagtcagcct gccgggcggc tgcgccatcg gttcgcgccc cgtcgatcag
     7681 catttgaaag gcttggaagc gatgggggcg gaaatcgtca tcgaacacgg ttacgtcaag
     7741 gctaagggta aactcaaagg tacgcgcgtg gcgatggatg tcgttaccgt cggcggcacg
     7801 gaaaacctgc tgatggcggc gacgctggcg gaaggtacga cggttttgga aaactgcgcc
     7861 atcgagcctg aagtggtcga tttggcggaa tgcctggtta aaatgggcgc gaaaatcagc
     7921 ggcatcggaa catcgaccat gatcgtggaa ggtgtggacg agctgcacgg ctgcgaacac
     7981 agcgtcgtcc ccgaccggat tgaagcgggg acgtttctgt gcgcggtggc gataaccggc
     8041 ggcagggtgg ttttgcggaa tgccgccccg aaaacgatgg aagtggtgtt ggacaaactg
     8101 gttgaggcag gtgcggtgat tgaggcgggc gacgattgga ttgccatcga tatgcggcag
     8161 cgtccgaagg cggtggacat ccgcacggtc gtccaccccg gcttccccac ggatatgcag
     8221 gcgcagttta tggcattgaa tgccgtggca gagggaagct gccgcgtggt ggaaacgatt
     8281 tttgaaaacc gctttatgca cgtccccgag ttgaaccgga tgggggcgaa catcacaacc
     8341 gagggcaata cggcatttgt gcagggtgtg gaacagcttt ccggcgcggt cgttaaggcg
     8401 acggatttgc gtgcgtccgc aagcctcgtt atcgccggtt tggcggcgcg cggcgaaacc
     8461 gtggtcgaac agatttacca cttggatcgc ggttatgaaa atattgaaaa aaaactcggc
     8521 agcgtcggcg cgaaaatcga gcgcgtatcc ggctgatcgg gttgcgatgc cgtctgaa
//
LOCUS       DAWGNT010000078         8407 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.078, whole genome shotgun sequence.
ACCESSION   DAWGNT010000078 DAWGNT010000000
VERSION     DAWGNT010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8407
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.078"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(308..1240)
                     /gene="cysK"
                     /locus_tag="WHR98_001225"
     CDS             complement(308..1240)
                     /gene="cysK"
                     /locus_tag="WHR98_001225"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEZ2307909.1"
                     /translation="MKIANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVK
                     DRIAEAMIEGAEKAGKINKNTVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKER
                     KMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDNEANPEVHRKTTA
                     EEIWRDTDGKVDVFVAGVGTGGTITGVGEVLKKYKPEVKVVAVEPEASPVLSGGEKGP
                     HPIQGIGAGFIPTVLNTKIYDSITKVSNEAAFETARAIAEKEGILVGISSGAAVWSAL
                     QLAKQPENEGKLIVVLLPSYGERYLSTPLFADLA"
     gene            complement(1434..2039)
                     /locus_tag="WHR98_001226"
     CDS             complement(1434..2039)
                     /locus_tag="WHR98_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307910.1"
                     /translation="MILLHLDFLSALLYAAVFLFLIFRAGMLQWFWASIMLWLGISVL
                     GAKLMPGIWGMTRAAPLFIPHFYLTLGSIFFFIGHWNRKTDGNGWQADPEHPLLGLFA
                     VSNVSMTLAFVGICALVHYCFSGTVQVFVFAALLKLYALKPVYWFVLQFVLMAVAYVH
                     RCGIDRQPPSTFGGSQLRLGGLTAALMQVSVLVLLLSEIGR"
     gene            complement(2036..2887)
                     /gene="dapF"
                     /locus_tag="WHR98_001227"
     CDS             complement(2036..2887)
                     /gene="dapF"
                     /locus_tag="WHR98_001227"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEZ2307911.1"
                     /translation="MNTLKFTKMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVG
                     FDQLLVVGRSETEGVDFRYRIFNADGSEVEQCGNGARCFARFVADKGLTDKKEICVET
                     ANGVIFPKLSDNGMVTVNMGKPRFMPSEIPFVPESGEGDDACIYGVHLESGIQPVSCV
                     NMGNPHAVIVVDDVECAPVRETGSLIEPHRQFPERVNVGFMQIVSRTAIRLRVFERGV
                     GETQACGTGACAAVVAGIRLGLLDEGKTVEVILPGGTLYIEWACGGDVMMTGPAETVF
                     EGELAYS"
     gene            3024..3320
                     /locus_tag="WHR98_001228"
     CDS             3024..3320
                     /locus_tag="WHR98_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307912.1"
                     /translation="MFRILLLLFPCAILAACTRNIPANPTVSNCAHLQNRTILYFDAH
                     GKPADGAVKGGFYKIIEIQGANCILIQDFNSTGNALGGSYVPDCRKSSLFPKNI"
     gene            3334..4002
                     /locus_tag="WHR98_001229"
     CDS             3334..4002
                     /locus_tag="WHR98_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEZ2307913.1"
                     /translation="MNHDITFLTLFLLGFFGGTHCIGMCGGLSSAFALQLPPHINRFW
                     LILLLNTGRVSSYTAIGLILGLIGQVGVSLDQTRVLQNILYTAANLLLLFLGLYLSGI
                     SSLAAKIEKIGKPIWRNLNPILNRLLPIKSIPACLAVGILWGWLPCGLVYSASLYALG
                     SGSAATGGLYMLAFALGTLPNLLAIGIFSLQLKKIMQNRYIRLCTGLSVSLWALWKLA
                     VLWL"
     gene            complement(4075..6195)
                     /gene="pnp"
                     /locus_tag="WHR98_001230"
     CDS             complement(4075..6195)
                     /gene="pnp"
                     /locus_tag="WHR98_001230"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEZ2307914.1"
                     /translation="MFDKHVKTFQYGNHTVTLETGEIARQAAAAVKVSMGDTVVLVAV
                     TTNKEVKEGQDFFPLTVDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPL
                     FPEGFYHDIQIVAMVVSVDPEIDSDIPAMLGASAALVLSGVPFAGPIGAARVGYINGV
                     YVLNPTKAELAKSQLDLVVAGTSKAVLMVESEAKILPEDVMLGAVVYGHDQMQVAINA
                     INEFADEVNPELWDWKAPETNEELVAKVRGIAGETIKEAFKIRQKQARSAKLDEAWNA
                     VKEALITEETDTLAANEIKGIFKHLEADVVRSQILDGQPRIDGRDTRTVRPLNIQTGV
                     LPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTDRFMLHYNFPPYSTGEVG
                     RMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEITESNGSSSMASVCGGCLS
                     LLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDFKVAGTTEGVTALQM
                     DIKIQGITKEIMQIALAQAKEARLHILDQMKAAVAGPQELSAHAPRLFTMKINQDKIR
                     EVIGKGGETIRSITAETGTEINIAEDGTITIAATTQEAGDAAKKRIEQITAEVEVGKV
                     YEGTVVKILDNNVGAIVSVMPGKDGLVHISQIAHERVRNVGDYLQVGQVVNVKALEVD
                     DRGRVRLSIKALLDAPAREENAAE"
     gene            complement(6432..7295)
                     /locus_tag="WHR98_001231"
     CDS             complement(6432..7295)
                     /locus_tag="WHR98_001231"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010359866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEZ2307915.1"
                     /translation="MSEIGLVKIYFGKVRDLYEIDDKRMLMVASDRLSAFDVILDDPI
                     PSKGEILTQISNFWFKKLAHIMPNHFTGDTVYDVLPENEAKVLEKRAVVAKKLTPVKV
                     EAIVRGYLAGSGWKDYQKTGSVCGIQLPEGMQEAQQLPEVIFTPSTKAAVGDHDENIS
                     FEECERIIGKELAAEVRAKAIQLYTEAAEYAKSRGIIICDTKFEFGLDTNGTLTLMDE
                     VLTPDSSRFWPADQYKVGTNPPSFDKQFVRDWLEQSGWNKKAPAPKVPADVIQKTVEK
                     YREALTLLTQD"
     gene            7494..8357
                     /gene="rfbD"
                     /locus_tag="WHR98_001232"
     CDS             7494..8357
                     /gene="rfbD"
                     /locus_tag="WHR98_001232"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HEZ2307916.1"
                     /translation="MRILLTGSKSQLARCLRDRLPEDWETIATDSASLDITDADAVCN
                     MVKSFQPDAIVNTAAYTAVDKAEGNAAAAFAVNASAVYNLALAAHRAHARFIHISTDY
                     IFDGKGKRPYQESDFTNPSNVYGQSKTAGELLALSANPDSLILRTSWLFSEYGDNFVR
                     TMLNLARERSPLSAVHNQIGCPTYAGDLAAAIIRLLQQTSPVRGIYHYAGGKSVSWYE
                     FAQHIFQAASQQQTSFPVPELTAVSDKEYPTAAPRPAYSILDCRKIENDFSIKPSDWQ
                     KALAQVVSKLL"
BASE COUNT         2014 a         2419 c         1938 g         2036 t
ORIGIN      
        1 gtggattaac aaaaaccagt acagcgttgc ctcgccttgc cgtactatct gtactgtctg
       61 cggcttcatt gccttgtcct gatttttgtt aatccactat atttgtactg tctgcggctt
      121 cgttgccttg tcctgatttt tgttaatcca ctataaaaaa tatttccctc aagcgatgtg
      181 gcgacaccaa cacctgatta aaacacaacc ggcgttttcg gcatatatgc aaaaacgcat
      241 ttcccagcac ggcgttacac cgataccgaa aaatgcgtct gaatgtttcg acaatccgat
      301 taaagcatta tgccaaatct gcaaaaagtg gcgtagagag atagcgttcg ccataagaag
      361 gcagcagcac gactatcagc ttgccttcgt tttcaggctg tttggcaagc tgcaacgcac
      421 tccaaaccgc cgcaccggaa gaaataccca ccaaaatgcc ttctttttcc gctattgcgc
      481 gggcggtttc aaaagccgct tcgttcgaca ctttggtaat gctgtcgtaa attttggtat
      541 tcaaaacggt cggaataaag cctgcgccga tgccttgaat cgggtgcggg cctttttcgc
      601 cgccgctcaa tacgggtgaa gcttcaggct cgacggcaac cactttaact tcgggtttgt
      661 attttttcaa cacttcgccc acgccggtaa tcgtaccgcc cgtgccgacg ccggcaacga
      721 agacatcgac tttgccgtcc gtatcccgcc aaatttcctc ggcggttgtt ttgcggtgga
      781 cttcggggtt tgcctcattg tcgaactggc gcggcataaa ataagtgtcg ggatgcgcgt
      841 ccaccaagga tttcgctttg gcaatcgcgc ccgccatacc ttcggcggca ggggtcagaa
      901 tcagctccgc accaaacgcg cgcaacagca ttttgcgctc cttactcatg ctttccggca
      961 tggtaatcgc cagcttgtag ccgcgtgcgg cacataccat tgccaaaccg acacccgtat
     1021 tgccgctggt tgcttcgaca atgacggtgt ttttgttgat tttgcccgct ttttcggcac
     1081 cctcgatcat tgcttcggca atgcggtctt tgacgctgct gcctggattg aaaaattcca
     1141 gtttcacggc aacctccgcc ttcaaacctt cggtcagacg gttcagtttg accaaaggcg
     1201 tgttgccgat tagttcggtg atgctgtttg caattttcat cttctgctcc tgaataataa
     1261 ggtttcgaca gtaaggcgca atccccatag gcatcctgtc cgattgcagg ggatttgcgc
     1321 cgaaacataa acaaatttcg gatatggctt tatcctaaac ctatgccgcc taaaaaacca
     1381 atatccaaaa tttctttctt tataactttt tgttccgata cggccgcacc gtattatctt
     1441 ccaatttctg aaagcagcag caccagtacc gagacctgca tcaacgctgc cgtcaacccg
     1501 ccgagtcgca gctgcgagcc gccgaacgtt gacggcggct gccggtctat accgcagcgg
     1561 tggacatagg caaccgccat cagcacaaac tgcaacacga accaataaac cggcttcagc
     1621 gcataaagtt tgagcagtgc cgcaaacaca aacacttgaa ccgttcccga aaagcaataa
     1681 tgcaccaacg cacatattcc gacaaaagca agcgtcatcg atacattact gacggcaaac
     1741 agcccgagca gaggatgttc ggggtctgcc tgccatccgt ttccatccgt tttccggttc
     1801 caatgcccga tgaaaaaaaa tatgctgccc aaagtcaggt aaaaatgggg gatgaacaag
     1861 ggcgcggcgc gggtcattcc ccatatgccg ggcatcagct ttgcccccaa aaccgatatg
     1921 cccagccaca gcataatact cgcccaaaac cattgcaaca ttcctgcgcg gaatatcaga
     1981 aacagaaaaa ccgccgcata cagtaaggca gacaaaaaat ccaaatgcag caaaatcatg
     2041 aatacgccaa ctcgccttca aacaccgttt ccgcagggcc ggtcatcatc acatcgccgc
     2101 cgcaggccca ttcgatatat aaagttccgc ccggcaaaat cacctctacc gttttccctt
     2161 catccaacaa ccccagacgg atacccgcca ccacagccgc acacgcgccc gtaccgcacg
     2221 cttgggtttc gcccacgccg cgctcgaaca cgcgcaaacg aatcgcggtt cggctgacaa
     2281 tctgcataaa gccgacgttg acgcgttcgg gaaactgcct gtgcggttcg ataagcgaac
     2341 cggtttcgcg caccggcgcg cattccacgt catcgaccac aatcaccgca tggggattgc
     2401 ccatattgac gcagctgaca ggctgaatgc cggattcgag atgcaccccg taaatacagg
     2461 catcatcccc ctcgcccgat tcggggacaa acggtatttc agacggcata aacctcggtt
     2521 tgcccatatt gaccgtaacc ataccgttat cggacaattt cggaaaaata acgccatttg
     2581 ccgtttcaac acaaatttct ttcttatcgg tcaaaccctt gtctgcaaca aaacgggcaa
     2641 aacaacgcgc tccgttgccg cattgctcga cctcgctacc gtcggcattg aaaatacggt
     2701 aacggaaatc cacaccttcg gtttccgaac gcccgaccac caaaagctgg tcgaagccca
     2761 cgccccggaa gcggtccgcc catgccgcaa tcggcgcgtc ctcgggggta aaatcctgac
     2821 tgaccgcgtc aatcaccata aaatcgttgc ccaaaccgtg cattttggta aatttcaaag
     2881 tgttcatatt gttccgaaat cccgtatcgt ctgttgcttc cgaatccgaa atcccccgca
     2941 ccgaagggaa atgcttccat ctcccgccgc ctgaggatta aaatcagcca ttatactgtt
     3001 tgttacccct tacaagaaac accatgttcc gcatattact gttgcttttc ccttgtgcaa
     3061 tccttgccgc ctgcacccga aacataccgg caaacccgac cgtttcaaat tgcgcgcatc
     3121 ttcaaaaccg caccatcctg tattttgacg cacacggcaa acccgccgac ggcgcagtaa
     3181 agggcggatt ttacaaaatt atcgaaatac agggtgcaaa ctgcatcctt attcaagact
     3241 ttaacagcac gggcaatgcc ctcggcggat cctatgtgcc ggactgccgc aaatcatccc
     3301 ttttcccgaa aaatatttga cttcaaactg cctatgaacc acgacatcac tttcctcacc
     3361 ctgttcctac tcggtttctt cggcggaacg cactgcatcg gtatgtgcgg cggattaagc
     3421 agcgcgtttg cgctccaact ccccccgcat atcaaccgct tttggctgat cctgctgctt
     3481 aacacaggac gggtaagcag ctatacggca atcggcctga tactcggatt aatcggacag
     3541 gtcggcgttt cactcgacca aacccgcgtc ctgcagaata ttttatacac ggccgccaac
     3601 ctcctgctgc tctttttggg cttatacttg agcggtattt cttccttggc ggcaaaaatc
     3661 gagaaaatcg gcaaaccgat atggcggaac ctgaacccga tactcaaccg gctgttaccc
     3721 ataaaatcca tacccgcctg ccttgcggtc ggaatattat ggggctggct gccgtgcgga
     3781 ctggtttaca gcgcgtcgct ttacgcgctg ggaagcggta gtgcggcaac gggcgggtta
     3841 tatatgcttg cctttgcact gggtacgctg cccaatcttt tggcaatcgg cattttttcc
     3901 ctgcaactga aaaaaatcat gcaaaaccga tatatccgcc tgtgtacggg attatccgta
     3961 tcattatggg cattatggaa acttgccgtc ctgtggctgt aagccccatt cattcccgat
     4021 acccgtaaaa aataccgtct gaaacctgtt cagacggcac tttcacccta agcgttactc
     4081 ggcggcattt tcctcacggg caggcgcgtc cagcagggct ttgatggaca gacggacacg
     4141 gcctctgtcg tccacttcca atgctttcac gttcaccacc tgaccgactt gcaggtagtc
     4201 gccgacattg cgtacgcgct cgtgggcgat ttggctgatg tgtaccaaac cgtctttgcc
     4261 cggcatcacg ctgacaatcg cgccgacatt gttgtcgagg attttcacca cagtgccttc
     4321 gtacactttg cccacttcca cttcggcagt aatctgctcg atgcgttttt tcgccgcatc
     4381 gccggcttct tgagtggttg cggcaatggt aatcgtaccg tcttcggcaa tattgatttc
     4441 cgtaccggtt tcagcggtaa tcgaacggat ggtttcaccg cccttaccga taacttcgcg
     4501 gattttgtct tggttgattt tcatcgtgaa caagcgtggc gcgtgtgcgg acagctcttg
     4561 cgggcccgca acggcggctt tcatctgatc caagatgtgc agacgcgctt ctttggcctg
     4621 tgccaaagcg atttgcataa tttctttggt aatgccttgg attttgatgt ccatttgcag
     4681 cgcggtaacg ccttcggtcg taccggccac tttaaagtcc atatcgccca agtggtcttc
     4741 gtcgcccaaa atgtcggtca ggacggcaaa tttgttgcct tccagaatca gacccatcgc
     4801 gataccggca acgtgtgctt tcaaaggcac gccggcagac aacaggctca ggcagccgcc
     4861 gcagacggaa gccatagagg aagagccgtt agattcggta atttcggaga ccacgcgcat
     4921 ggtgtagctg aaatcttcag gtttcggcaa tacggccaac aaggcacgtt tagccaaacg
     4981 gccgtgaccg atttcacggc gtttcggcgc gcccatgcgg cccacttcgc cggtagagta
     5041 cggcggaaag ttgtagtgca gcataaagcg gtcagtgtat tcgccggaaa gcgcgtcgat
     5101 gatttgctcg tcgcgcgaag tacccaaagt tgcaacggcc aaagcttggg tttctccacg
     5161 ggtaaacaat gcagaaccgt gcgtgcgcgg caatacgccg gtttggatgt tcagcggacg
     5221 gacggtgcgg gtgtcgcggc cgtcgatgcg cggttggcca tccaaaattt ggctgcggac
     5281 gacatcggct tccaagtgtt tgaaaatgcc tttgatttcg ttggctgcca aagtgtcggt
     5341 ttcttcggta atcaacgctt ctttcacggc attccaagct tcgtccaact tggcagaacg
     5401 cgcttgtttt tgacggattt tgaacgcttc tttaatggtt tcgccggcaa tcccgcggac
     5461 tttggcaacc agttcctcat tggtttcagg tgctttccaa tcccaaagtt ccggattgac
     5521 ttcgtcggca aattcattga ttgcattgat ggcaacctgc atttgatcgt ggccgtaaac
     5581 caccgcgccc agcatcacgt cttcgggcag gattttggct tcggattcca ccatcaacac
     5641 ggctttggac gtaccggcga ccaccaagtc caattgcgat ttcgccaatt cggctttagt
     5701 cgggttcaaa acgtacacgc cgtttatata acccacgcgt gccgcaccaa tcggaccggc
     5761 aaacggtacg ccgctcaaca ccagcgcggc agacgcgccc aacattgcag gaatgtcgga
     5821 atcgatttcg ggatcgacgg acacgaccat cgctacgatt tggatgtcgt ggtagaaacc
     5881 ttcggggaac agcggacgaa tcgggcggtc gatcagacgg ctggtcagga tttctttttc
     5941 gctttgtttg ccttcgcgtt tgaagaaacc gccggggatt ttacctgcgg cgtaagtgcg
     6001 ctcgaggtaa tcgacagtca gagggaagaa gtcttggcct tctttcactt ctttgttggt
     6061 ggtaacggca accaaaacca cggtgtcgcc catagagact ttaacggcag cggcggcttg
     6121 gcgggcaatt tcgccggttt ccaaagtaac ggtgtggttg ccgtattgga aagttttaac
     6181 gtgtttgtcg aacattattg ttcctttcaa aataccgcac tgctaaaaca ctaataatgc
     6241 acactaaaat ccgaatgtgc atagttaggg tttcagaccg tgcggcaggt tgtaaacaag
     6301 ctttcagacg acatttcgga cgctgaaagc aattccaaat tataaaggca accatcctta
     6361 aaatccagta ttgatacaat aaaaaggccg tctgaaccat atttctttca gacggccttc
     6421 aaacttaaaa atcaatcctg agtcagcaaa gtcaatgctt cccgatactt ctcgacagtt
     6481 ttctgaatca catcggcagg cactttcggc gcaggggctt ttttgttcca accgctttgt
     6541 tccagccagt cgcggacgaa ttgtttgtca aaagacggcg gattggtgcc gactttgtat
     6601 tggtcggcag gccaaaaacg gctcgaatcg ggagtcaata cctcatccat cagcgtcagc
     6661 gtaccgtttg tatccaaacc gaattcaaat ttggtatcgc aaatgatgat gccgcgcgat
     6721 ttggcatatt ccgccgcttc tgtataaagc tgaatcgctt tggcgcgcac ttccgccgcc
     6781 aattcttttc cgataatgcg ttcgcattct tcaaagctga tgttttcatc gtgatcgccg
     6841 actgcggctt tggttgaggg cgtaaaaatc acttcaggca gttgttgcgc ttcctgcata
     6901 ccttcaggca gttgaatacc gcaaaccgag ccggtttttt gataatcttt ccaaccgctg
     6961 cctgccagat aaccacgcac aatcgcctct actttcaccg gagtgagctt tttagccacg
     7021 acggcgcgtt tttctaaaac tttggcttcg ttctcaggca aaacatcgta cacggtatcg
     7081 ccggtaaaat ggttgggcat aatatgcgcc agttttttaa accaaaaatt ggaaatctgc
     7141 gtcagaatct cccctttgct cggaatcggg tcgtccaaaa tcacatcaaa cgcggacagg
     7201 cggtcggaag cgaccatcag catacgttta tcgtcgattt catataaatc gcgcactttt
     7261 ccaaaataga tctttaccaa accaatctca ctcatttcgc cccccctgaa aatatcttga
     7321 aaataccgac ccgacacccg acaggtttga atcacaaacc aatattctag ccgaagtcgg
     7381 cgcaaaacaa tacccatggc acaaaaaacc aacccgtcaa ccgtcggcaa agttttggca
     7441 ctataatacc gacagcaagt cctacaatac acttttacca aaggaaatac ctcatgagaa
     7501 tcctattgac aggctcgaaa agccaactgg cacgctgcct gcgcgaccgt cttccggaag
     7561 actgggaaac cattgcgacg gattccgcat ccctagacat taccgatgcc gatgccgtct
     7621 gcaacatggt caaaagtttc caacccgacg ctattgtcaa cacggctgcc tatactgccg
     7681 tcgacaaagc ggaaggcaat gcggcagcgg catttgccgt caatgcttcc gccgtttaca
     7741 accttgcctt ggcagcacat cgcgcccatg cccgattcat ccacatctca accgactata
     7801 tctttgacgg taaagggaaa aggccctatc aggaaagcga ctttaccaat ccttccaatg
     7861 tatacggaca atccaaaacc gcaggcgagc tgctcgcact gtctgccaat cccgacagcc
     7921 ttatcctgcg gacttcttgg ctgtttagcg aatacgggga caactttgtc cgcaccatgc
     7981 tgaaccttgc gcgggaacgt tccccgctgt ccgccgtcca caaccaaatc ggctgcccga
     8041 cctatgccgg cgatttagct gccgccatca tccgcctttt gcagcaaacg tcgcccgtgc
     8101 gcggcattta ccactacgcc ggcggcaaat ccgtatcctg gtacgaattt gcccaacata
     8161 ttttccaagc ggcatcgcaa cagcagacat ccttccccgt tcccgaattg actgccgttt
     8221 cagacaagga atatccgacc gccgccccca ggcccgcata cagcattttg gactgccgca
     8281 aaatcgaaaa cgacttcagc atcaaaccgt cagactggca aaaagccctt gcacaggtcg
     8341 tttccaagct gctctgatgc cgcccgcctc tccgtttccg ccgtcaagca ccgccttggc
     8401 ggttttc
//
LOCUS       DAWGNT010000079         8358 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.079, whole genome shotgun sequence.
ACCESSION   DAWGNT010000079 DAWGNT010000000
VERSION     DAWGNT010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8358
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.079"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            259..2400
                     /locus_tag="WHR98_001233"
     CDS             259..2400
                     /locus_tag="WHR98_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_180374912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HEZ2307917.1"
                     /translation="MTLKASKQASKQASKQASKQASKQASKQASGRVNLLTLSVLSLF
                     CTPYAWGSDAYDPVKEAEIKNKFILEAAEDRNSHVWRGPCSISFDCFGAFSYQPGSNT
                     RSTEIGNDTDFSFSDKPVNGVSHYFSSGKTDQNSSEYGYDEINITGKNYNSGILAVDN
                     MPVVKKYITENYGDNLKEAVKKQLEDTAKKQPDLFAKATEKVKQDLRKAAVSQFGEEK
                     LKKIPEAVWETLAKQTLLNQTANASDQILNNIFDKKLHVKIENKSHVAGQVLELTKMT
                     LKDSLWEPRRHSDIHTLETSDNARIRLNTKDEKLTVHKEYKGGADFLFGYDVRESDEP
                     ALTFEQNVSGKSNVVLEQNPKNVKTLDGRKLIAAKQADKDAFGLDKTYKTGLYELLLK
                     QCEGGFCFGVQRLAIPEAEAVLYAQQAYAANTLFGLRAADRGGDVYAADPSRQKLWLR
                     FIGGRSHQNIRGGAAADGRRKGVQIGGEVFVRQNEGSRLAIGVMGGRVGQHASANGKD
                     GAAGSYLHGYGGGVYATWHQLRDKQTGAYLDGWLQYQRFKHRINDENRAERYKTKGWT
                     ASVEGGYNALVAEGVVGKGNNVRFYLQPQAQFTYLGVNGGFTDSEGTAVGLLGSGQWQ
                     SRAGIRAKTRFALRNGVNLQPFAAFNVLHRSKSFGVEMDGEKQTLAGRTALEGRFGIE
                     AGWKGHMSARIGYGKRTDGDKEAALSLKWLF"
     gene            2642..4108
                     /locus_tag="WHR98_001234"
     CDS             2642..4108
                     /locus_tag="WHR98_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HEZ2307918.1"
                     /translation="MVIFYFCGKTFMPARNRWMLLLPLLASAAYAEETPREPDLRSRP
                     EFRLHEAEAKPIDREKVPGQVREKGKVLQIDGETLLKNPELLSRAMYSAVVSNNIAGI
                     RVILPIYLQQAQQDKMLALYAQGILAQADGRVKEAISHYRELIAAQPDAPAVRMRLAA
                     ALFENRQNEAAADQFDRLKAENLPPQLMEQVELYRKALRERDAWKVNGGFSVTREHNI
                     NQAPKRQQYGKWTFPKQVDGTAVNYRLGAEKKWSLKNGWYTTAGGDVSGRVYPGNKKF
                     NDMTAGVSGGIGFADRRKDAGLAVFHERRTYGNDAYSYTNGARLYFNRWQTPKWQTLS
                     SAEWGRLKNTRRARSDNTHLQISNSLVFYRNARQYWMGGLDFYRERNPADRGDNFNRY
                     GLRFAWGQEWGGSGLSSLLRLGAAKRHYEKPGFFSGFKGERRRDKELNTSLSLWHRAL
                     HFKGITPRLTLSHRETRSNDVFNEYEKNRAFVEFNKTF"
     gene            complement(4309..5277)
                     /locus_tag="WHR98_001235"
     CDS             complement(4309..5277)
                     /locus_tag="WHR98_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307919.1"
                     /translation="MKLTLAIPSLNLDEDETRIPLCLPAFNKILQYGSLHRQSCTASA
                     FYARYLWCGRLAERAAQSLNMPSEAVALATPVWQKMGMHQANVLTAEYLNVGTDEAER
                     LCRDLSAFYGDIPWRFVPVLPELWLVSLPCAYRWGAKPVLDLGGLLGADDQPDGEDAL
                     EWLRVQTEIQMWLAAHPVNHNRKKRGLPELNGLWLWDSLHGSSQGGTLFADTVWSRFH
                     PDRRALPDNFRAYEETAAYLPDTHHILFMDDLRLTALTGDRERYAAILQQWEERWFAP
                     LYEAVRIGKIKRLDIATDGQHGGTLTFKPADRWKFWRGAKTFDGIW"
     gene            5355..6647
                     /locus_tag="WHR98_001236"
     CDS             5355..6647
                     /locus_tag="WHR98_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEZ2307920.1"
                     /translation="MAVFPLSAKHRKYALRALAVSIILVSAAYIASTERTERVRPQRV
                     EQKLPPLSWGGSGVQTAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLR
                     HLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVALEKKGGIWRRSASEADMKVLPTL
                     RSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLMYDSLYFHGQQ
                     VAAGDILAAEVVKGGTRHQAFYYRSDKEGGGGGNYYDEDGRVLQEKGGFNIEPLVYTR
                     ISSPFGYRMHPILHTWRLHTGIDYAAPQGTPVRASADGVITFKGRKGGYGNAVMIRHA
                     NGVETLYAHLSAFSQAQGNVRGGEVIGFVGSTGRSTGPHLHYEARINGQPVNPVSVAL
                     PTPELTQADKAAFAAQKQKADALLARLRGIPVTVSQSD"
     gene            complement(6997..7683)
                     /locus_tag="WHR98_001237"
     CDS             complement(6997..7683)
                     /locus_tag="WHR98_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HEZ2307921.1"
                     /translation="MYAFTDAQQQKALFRLVLFHILIIAASNYLVQFPFQIFGIHTTW
                     GAFSFPFIFLATDLTVRIFGSHLARRIIFWVMFPALLLSYIFSVLFHDGGWTGLGALS
                     EFNTFVGRIALASFAAYALGQILDIFVFNKLRRLKAWWIAPTASTVIGNALDTLVFFA
                     VAFYASSDEFMAANWQGIALVDYLFKLTVCGLFFLPAYGVILNLLTKKLTTLQTKQAQ
                     DRPAPSLQNP"
     gene            complement(7760..8233)
                     /gene="queF"
                     /locus_tag="WHR98_001238"
     CDS             complement(7760..8233)
                     /gene="queF"
                     /locus_tag="WHR98_001238"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEZ2307922.1"
                     /translation="MSRNNEELQGISLLGNQKTQYPTGYAPEILEAFDNKHPDNDYFV
                     KFVCPEFTSLCPMTGQPDFATIVIRYIPHIKMVESKSLKLYLFSFRNHGDFHEDCVNI
                     IMKDLIALMDPKYIEVFGEFTPRGGIAIHPFANYGKAGTEFEALARKRLFEHDAQ"
     regulatory      complement(8238..8282)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
BASE COUNT         2015 a         2066 c         2497 g         1780 t
ORIGIN      
        1 ggaatccgac ttatctggtt tcggttcttt ttctcgtttc aggtgatttc taaaccgtca
       61 ttcccgcgca ggcgggaatc cagaccttca aaccccggcc atccccgata aattcttgca
      121 gcattaaaat tctagattcc cactttcgcg ggaatgacgg cggagaggtt ttttgttttt
      181 cccgattttt cattgtggtg tagtgtgatg tagtatataa tcattataat ttcaacactt
      241 gacaaaggaa aatttctcat gacactgaaa gcaagcaagc aagcaagcaa gcaagcaagc
      301 aagcaagcaa gcaagcaagc aagcaagcaa gcaagcaagc aagcaagcgg tcgggttaat
      361 ctattaacat tatctgtttt atcgctgttt tgcacgccat atgcttgggg ttcggatgcg
      421 tacgatcccg tcaaagaagc cgagattaaa aacaaattta ttttagaagc ggcggaagac
      481 agaaattccc acgtttggcg cggcccgtgc agcatatctt ttgattgctt cggtgctttc
      541 agttatcagc ccggttcaaa tactcgttct accgaaatcg gcaacgatac cgatttttca
      601 ttttcagaca agccggtaaa cggtgtttcc cattattttt ccagcggcaa aaccgatcaa
      661 aattcatccg aatacgggta tgacgaaatc aatatcacgg gtaaaaacta caatagcggc
      721 atcctcgccg tcgataatat gcccgttgtt aagaaatata ttacagagaa ttacggggat
      781 aatttaaagg aggcggttaa gaagcaatta gaagataccg ctaaaaaaca gccggatttg
      841 ttcgcaaaag ctaccgagaa agtcaaacag gatttaagga aggcagctgt aagtcagttt
      901 ggcgaagaaa aattgaaaaa aataccagaa gcagtatggg aaactttggc aaaacagaca
      961 ttactcaatc aaacggctaa cgcatcagat caaatactca acaacatctt cgataaaaaa
     1021 ttacacgtca aaatcgaaaa caaatcccac gtcgccggac aggtgttgga actgaccaag
     1081 atgacgctga aagattccct ttgggaaccg cgccgccatt ccgacatcca tacgctggaa
     1141 acttccgata atgcccgcat ccgcctgaac acgaaagatg aaaaactgac cgtccataaa
     1201 gaatataagg gcggcgcgga tttcctgttc ggctacgacg tgcgggagtc ggacgaaccc
     1261 gccctgacct ttgaacaaaa cgttagcgga aaatccaatg tggttttgga acaaaatcca
     1321 aaaaatgtga aaacgctcga cggacgcaaa ctgattgcgg cgaaacaagc cgataaagat
     1381 gcgtttggtt tggataaaac ttataaaacc gggctgtacg aattattgct caaacaatgc
     1441 gaaggcggat tttgcttcgg cgtgcagcgt ttggccatcc ccgaggcgga agcggtttta
     1501 tatgcccaac aggcttatgc ggcaaacact ttgttcggac tgcgtgccgc cgacaggggc
     1561 ggcgacgtgt atgccgccga tccgtcccgt caaaaattgt ggctgcgctt catcggcggc
     1621 cggtcgcatc aaaatatacg gggcggcgcg gctgcggacg ggcggcgcaa aggcgtgcaa
     1681 atcggcggcg aggtgtttgt acggcaaaat gaaggcagcc ggctggcaat cggcgtgatg
     1741 ggcggcaggg tcggccagca cgcatcagcc aacggcaaag acggtgcggc aggcagttat
     1801 ttgcatggtt atggcggggg tgtttatgct acgtggcatc agttgcgcga taaacaaacg
     1861 ggtgcgtatt tggacggctg gttgcaatac caacgtttca aacaccgcat caatgatgaa
     1921 aaccgtgcgg aacgctacaa aaccaaaggt tggacggctt ctgtcgaagg cggctacaac
     1981 gcgcttgtgg cggaaggcgt tgtcggaaaa ggtaataatg tgcggtttta cctgcaaccg
     2041 caggcgcagt ttacctactt gggcgtaaac ggcggcttta ccgacagcga ggggacggcg
     2101 gtcggactgc tcggcagcgg tcagtggcaa agccgcgccg gcattcgggc aaaaacccgt
     2161 tttgctttgc gtaacggtgt caatcttcag ccttttgccg cttttaatgt tttgcacagg
     2221 tcaaaatctt tcggcgtgga aatggacggc gaaaaacaga cgctggcagg caggacggca
     2281 ctcgaagggc ggttcggcat tgaagccggt tggaaaggcc atatgtccgc acgcatcgga
     2341 tacggcaaaa ggacggacgg cgacaaagaa gccgcattgt cgctcaaatg gctgttttga
     2401 tgcgccggga aatgttttga cgtacaggcg gcacaccggc acggcaccgc gcgccgcccc
     2461 gcaaaccaat ccgaaccctg ccgccccgaa gggcggggca taatgatgaa accggcggaa
     2521 aaccgccggt tttttgccgc cgtttgaaac ccgattctgg cttcagacgg cattgtcgcg
     2581 gcatcgggcg gcagggtttg gaacagcggc ataaaaaact gatacaatcc gccggttgat
     2641 aatggttatt ttttattttt gtgggaagac atttatgcct gcacgaaaca gatggatgct
     2701 gctgctgcct ttattggcaa gcgcggcata tgccgaagaa acaccgcgcg aaccggattt
     2761 gagaagccgt cccgagttca ggcttcatga agcggaggcc aaaccgatcg acagggagaa
     2821 ggtaccgggg caggtgcggg aaaaaggaaa agttttgcag attgacggcg aaaccctgct
     2881 gaaaaatccc gaattactgt cccgcgcgat gtattccgca gtggtttcaa acaatattgc
     2941 cggtatccgc gttattttgc caatttacct acaacaggcg cagcaggata agatgttggc
     3001 actttatgca caagggattt tggcgcaggc agacggtagg gtgaaggagg cgatttccca
     3061 ttaccgggaa ttgattgccg cccaacccga cgcgcccgcc gtccgtatgc gtttggcggc
     3121 ggcattgttt gaaaacaggc agaacgaggc ggcggcagac cagttcgacc gcctgaaggc
     3181 ggaaaacctg ccgccgcagc tgatggagca ggtcgagctg taccgcaagg cattgcgcga
     3241 acgcgatgcg tggaaggtaa atggcggctt cagcgtcacc cgcgaacaca atatcaacca
     3301 agccccgaaa cggcagcagt acggcaaatg gactttcccg aaacaggtgg acggcacggc
     3361 ggtcaattac cggctcggcg cggagaaaaa atggtcgctg aaaaacggct ggtacacgac
     3421 ggcgggcggc gacgtgtccg gcagggttta tccggggaat aagaaattca acgatatgac
     3481 ggcaggcgtt tccggcggca tcggttttgc cgaccggcgc aaagatgccg ggctggcagt
     3541 gttccacgaa cgccgcacct acggcaacga cgcttattct tacaccaacg gcgcacgcct
     3601 ttatttcaac cgttggcaaa ccccgaaatg gcaaacgttg tcttcggcgg agtgggggcg
     3661 tttgaagaat acgcgccggg cgcgttccga caatacccat ttgcaaattt ccaattcgct
     3721 ggtgttttac cggaatgcgc gccaatattg gatgggcggt ttggattttt accgcgagcg
     3781 caaccccgcc gaccggggcg acaatttcaa ccgttacggc ctgcgctttg cctgggggca
     3841 ggaatggggc ggcagcggcc tgtcttcgct gttgcgcctc ggcgcggcga aacggcatta
     3901 tgaaaaaccc ggctttttca gcggttttaa aggggaaagg cgcagggata aagaattgaa
     3961 cacatccttg agcctttggc accgggcatt gcatttcaaa ggcatcacgc cgcgcctgac
     4021 gttgtcgcac cgcgaaacgc ggagtaacga tgtgttcaac gaatacgaga aaaatcgggc
     4081 gtttgtcgag tttaataaaa cgttctgatt gctgttcctt ttcggaggaa accctgccgg
     4141 cggcggtatc acggcgggca tcggcggctt tcgggcggtg ctttgcgtgc cgccgcgtgt
     4201 gcggaaacgc attccggttt ttccggcata acggcgatgc gaggtaaaat gccgtctgaa
     4261 acccgattcg ggcttcagac ggcattgtcg cggttgcggc gggcgggttc accagattcc
     4321 gtcaaaggtt ttcgcgccgc gccaaaattt ccacctgtcg gcgggtttga aggtcagcgt
     4381 accgccgtgt tgtccgtccg tggcgatgtc cagccgtttg attttgccga tgcggacggc
     4441 ttcgtaaagc ggtgcgaacc agcgttcttc ccactgctgc aatattgccg cataccgctc
     4501 cctgtcccct gtcagggcgg tcaggcgcaa atcgtccata aacaggatat ggtgcgtgtc
     4561 gggtaggtat gccgccgttt cttcataggc gcggaagttg tcgggcaatg cgcggcggtc
     4621 ggggtggaaa cggctccaaa ccgtatcggc gaaaagcgtg ccgccttgac tgcttccgtg
     4681 cagactgtcc caaagccaca gcccgttcaa ctcgggcagc ccgcgtttct tgcggttatg
     4741 gttgacgggg tgcgccgcca gccacatttg gatttcggtt tggacgcgca gccattccaa
     4801 cgcgtcttcc ccgtccggct gatcgtccgc gcccaacaat ccgcccaagt ccaaaacggg
     4861 cttcgcgccc cagcggtacg cgcaaggaag ggaaaccagc cataattcgg gcaggacggg
     4921 aacgaaacgc catggaatgt cgccgtaaaa cgccgacagg tcgcggcaga gccgttccgc
     4981 ttcatccgta ccgacgttca gatattccgc cgttagcaca tttgcctgat gcatccccat
     5041 cttttgccag acgggcgtgg cgagcgcgac ggcttcagac ggcatattca ggctttgtgc
     5101 cgcgcgttcc gccagtctgc cgcaccacaa ataacgcgcg taaaatgccg aagccgtgca
     5161 gctttggcgg tgcagcgagc cgtattgcag gattttgttg aaggcgggca ggcagagagg
     5221 tattcgggtt tcgtcttcat ccaaattgag cgagggaatg gcgagggtga gtttcatcgt
     5281 ttgacgtttc agaaatgcag gtcaggcgca acattataga ggattcggcg caaacgccgt
     5341 caaaaaggaa caatatggct gtcttcccac tttcggcaaa acatcggaaa tacgcgctgc
     5401 gcgcgcttgc cgtttcgatt attttggtgt cggcggcata cattgcttcg acagagagga
     5461 cggagcgcgt cagaccgcag cgcgtggaac aaaaactgcc gccgctgtct tggggcggca
     5521 gcggtgttca gacggcatat tgggtgcagg aggcggtgca gccaggcgac tcgctggcgg
     5581 acgtgctggc gcgttcgggt atggcgcggg acgaaattgc ccgaataacg gaaaaatatg
     5641 gcggcgaagc cgatttgcgg catttgcgtg ccgaccagtc ggttcatgtt ttggtcggcg
     5701 gcgacggcgg cgcgcgcgaa gtgcagtttt ttaccgacga agacggcgag cgcaatctgg
     5761 tcgctttgga aaagaaaggc ggcatatggc ggcggtcggc ttctgaggcg gatatgaagg
     5821 ttttgccgac gctgcgttcg gtcgtggtca aaacgtcggc gcgcggttcg ctggcgcggg
     5881 cggaagtgcc cgtcgaaatc cgcgaatcct taagcgggat tttcgccggc cgcttcagcc
     5941 ttgacggttt gaaggaaggc gatgccgtgc gcctgatgta cgacagcctg tatttccacg
     6001 ggcagcaggt ggcggcgggc gatattttgg cggctgaagt cgttaagggc ggcacaaggc
     6061 atcaggcgtt ctattaccgt tcggacaagg aaggaggagg gggcggcaat tattacgatg
     6121 aagacggcag ggtgttgcag gaaaaaggcg gcttcaacat cgagccgctg gtctatacgc
     6181 gcatttcttc gccgttcggc taccgtatgc accccatcct gcacacttgg cggctgcaca
     6241 cgggcatcga ttatgccgca ccgcagggaa cgccggtcag ggcttccgcc gacggcgtga
     6301 ttacctttaa aggccggaag ggcggatacg gcaacgcggt gatgatacgc cacgccaacg
     6361 gtgtggaaac gctgtacgcg cacttgagcg cgttttcgca ggcacaaggc aatgtgcgcg
     6421 gcggcgaggt catcggtttt gtcggttcga cagggcgttc gaccgggccg cacctgcatt
     6481 acgaggcacg catcaacggg cagcccgtca atcctgtttc agtcgcattg ccgacacccg
     6541 aattgacgca ggcggacaag gcggcgtttg ccgcgcagaa acagaaggcg gacgcgctgc
     6601 ttgcgcgctt gcgcggcata ccggttaccg tgtcgcaatc ggattgaagt ttgaaccggc
     6661 gacgaaaaca atgccgtctg aaaatctgca aacaggtttt cagacggcat ttgcagttga
     6721 ttaaaataaa attaagccaa ggaagcactg ccgtcattcc cgtacgggcg ggaatccgga
     6781 caccacggca cggaaaccca tccgccgtca ttcccgcgaa agcgggaatc tagaaataca
     6841 atgcggcagg agtttatcgg aaatgactga aacccaacgc accggattcc cgctttcgcg
     6901 ggaatgacga agtgggcggg aatccggatt tatccgttcc ggcagtgttt gcaaataaaa
     6961 gaaaacccaa ccgtcccgat tcccggcagg gctgtgttac ggattttgca gcgagggcgc
     7021 ggggcggtct tgcgcctgtt tggtttgcag ggtcgtcagt tttttcgtca gcagattcag
     7081 aatcacgccg taggcgggca ggaaaaacag accgcagacg gtgagtttga acaggtaatc
     7141 gaccaaggcg atgccctgcc agtttgccgc cataaattca tcgctgcttg cgtagaaggc
     7201 aacggcgaaa aataccagcg tatccaaggc gttgccgatg acggttgatg cggtcggggc
     7261 aatccaccac gctttcagac ggcgtaattt gttgaataca aaaatatcga ggatttgtcc
     7321 gagcgcgtag gcggcaaaac ttgccagcgc gatgcgtccg acaaaggtgt tgaattcgga
     7381 cagtgcgccc aagcccgtcc aaccgccgtc gtggaacaaa acggaaaaga tataggaaag
     7441 caaaagggcg gggaacatca cccaaaagat aatccgccgt gccaagtgcg aaccgaaaat
     7501 gcggacggtc aggtcggtgg caaggaagat gaagggaaag gaaaatgcgc cccaagtggt
     7561 gtggatgccg aaaatttgga aggggaactg caccagatag ttgctggcgg cgatgataag
     7621 gatatgaaaa agcaccagcc ggaagagtgc cttctgttgc tgtgcgtcgg taaatgcgta
     7681 cataaaaaaa cctttcggaa aggcgttcag acggcatacc gtatcgaaag aatgccgtct
     7741 gaaatatggg aaggatggtt tattgtgcgt cgtgctcaaa caggcgttta cgcgccaatg
     7801 cttcaaactc ggtgcctgct ttgccgtaat tggcgaaagg atgaatggcg atgccgccgc
     7861 gcggtgtgaa ctcgccgaat acttcgatgt atttcggatc catcagggca atgaggtctt
     7921 tcatgatgat gttgacgcag tcttcatgaa aatcgccgtg gttgcggaag ctgaagaggt
     7981 agagtttcag ggatttgctt tccaccattt tgatgtgcgg aatgtagcgg atgacgatgg
     8041 tggcgaagtc gggctgcccg gtcatggggc agaggctggt gaactctggg cagacgaatt
     8101 tgacgaaata gtcgttgtcg ggatgtttgt tgtcgaatgc ttcgagaatt tcaggcgcgt
     8161 agccggtcgg atattgggtt ttttgattgc ccaaaagaga gatgccttgc agctcttcgt
     8221 tgttgcggga catgagggtt tccttagttt tttaatgtgg gaggttttcg aaccacgggc
     8281 ggcgattgta atataagcgg cggtatctgt gtagttttct tcagacggca tggtttggac
     8341 ggcggcgttt tccgtgtc
//
LOCUS       DAWGNT010000080         8300 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.080, whole genome shotgun sequence.
ACCESSION   DAWGNT010000080 DAWGNT010000000
VERSION     DAWGNT010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8300)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8300)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8300
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.080"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(208..1593)
                     /gene="pntB"
                     /locus_tag="WHR98_001239"
     CDS             complement(208..1593)
                     /gene="pntB"
                     /locus_tag="WHR98_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HEZ2307923.1"
                     /translation="MSSGLVTAAYIVAAILFIFSLAGLSKQETAKQGCYSGIAGMAVA
                     LFVTVFSDNTHGLGWIIIAMLIGAAIGIYKAKKVEMTEMPELIALLHSFVGLAAVLVG
                     FNSYIEPGNVSHDMHTIHLVEVYLGIFIGAVTFTGSLVAFGKLNGKISSSPLQLPAKH
                     KLNALALAVSFVLLLVFVGINGSGFILLIMTLIALAFGWHLVASIGGADMPVVVSMLN
                     SYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFVSVIAGGFGSDSG
                     TLSSGSQEIGEYREVKAADIAEMLKGANNVIITPGYGMAVAQAQYPVAEITELLRKNG
                     TEVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFPETDVVLVIGANDTVN
                     PAAQTDPNSPIAGMPVLEVWKAKEVVVFKRSMNTGYAGVQNPLFFNENSVMCFGDAKK
                     TVDDILSELKK"
     gene            complement(1659..2042)
                     /locus_tag="WHR98_001240"
     CDS             complement(1659..2042)
                     /locus_tag="WHR98_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HEZ2307924.1"
                     /translation="MTFAYWCILIACLLPLFCAAYAKKAGGFRFKDNHNPRDFLARTQ
                     GTAARAHAAQQNGFEAFAPFAAAVLTAHATGNAGQATVNTLAGLFILFRLAFIWCYIA
                     DKAALRSLMWAGGFACTVGLFVAAA"
     gene            complement(2046..3587)
                     /locus_tag="WHR98_001241"
     CDS             complement(2046..3587)
                     /locus_tag="WHR98_001241"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HEZ2307925.1"
                     /translation="MKIGIPRESLSSETRVACTPATVALLGKLGFETVVESGAGLAAS
                     LDDAAYQTAGATVADKAAVWACPLIYKVNAPSEGELPLLNEGQTIVSFLWPRQNEALV
                     EALRAKKVNALAMDMVPRISRAQALDALSSMANISGYRAVIEAANAFGRFFTGQITAA
                     GKVPPAQVLVIGAGVAGLAAIGTANSLGAVVRAFDTRLEVAEQIESMGGKFLKLDFPQ
                     ESGGSGDGYAKVMSDEFIAAEMKLFAEQAKEVDIIITTAAIPGKPAPKLITKEMVESM
                     KSGSVIVDLAAATGGNCELTRPGELSVTDNGVKIIGYTDMANRLAGQSSQLYATNLVN
                     LTKLLSPNKDGEITLDFEDVIIRNMTVTHDGEITFPPPPIQVSAQPQQTPSEKAASAA
                     KPEPKPVSLWKKLAPAVIAAVLVLWVGAVAPAAFLNHFIVFVLACVIGYYVVWNVSHS
                     LHTPLMSVTNAISGIIVVGALLQIGQGNGFVSLLSFVAILIASINIFGGFFVTRRMLN
                     MFRKG"
     gene            3877..4710
                     /gene="serB"
                     /locus_tag="WHR98_001242"
     CDS             3877..4710
                     /gene="serB"
                     /locus_tag="WHR98_001242"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEZ2307926.1"
                     /translation="MPQALVLQFPSAEALPSDFPSRLPEPDCADEKRMRFIIEEGFSL
                     SEKDAALLGSRQIDHAVLSDMDFGELGLIVSDMDSTLITIECVDEIAAGVGLKDKVAE
                     ITERSMRGELDFEQSLRSRVALLAGLDEQILADVYENVLKLSPGAEFLLDECKRHDVK
                     FLLVSGGFTFFTERLQQRLGFEYQHANVLEIENGRLTGRLKGRIIDAQAKADLLREYR
                     SRLGLQPHQVLAVGDGANDIPMLKETGIGVAYRAKPKVRAAADVCINFGGLERVRGLF
                     R"
     gene            4776..5999
                     /locus_tag="WHR98_001243"
     CDS             4776..5999
                     /locus_tag="WHR98_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEZ2307927.1"
                     /translation="MGRRKLWFALAAAGVIGGLVGIVLTELMHFIQHTAYGYGADGVY
                     TSFREGVAQASGMRRVAVLTLCGAVAGSGWWLLKRFGKPQIEIKAALKQPLQGLPFLT
                     TVFHVLLQIITVGLGSPLGREVAPREMTAAFAFAGGRRLGLDEGEMRLLIACASGAGL
                     AAVYNVPLASTLFILEAMLGVWTQQAVAAALLTSVIATAVARIGLGDVQQYHPANLAV
                     STSLLWFSAVIGPILGATAVFFQRTAQKFPFIKRDNIKIIPLAVCMFALIGAIAVWFP
                     EILGNGKAGNQLTFGGLTDWQHSLELTAVKWLVVLMALAAGAYGGLITPSMMLGSTIS
                     FAAAAAWNSVFPEMPSGSAAVVGAAVFLGVSLKMPLTAIVFVLELTYAPLSLLLPLCI
                     GMAGALGTSGKMGFK"
     gene            6160..7740
                     /gene="purH"
                     /locus_tag="WHR98_001244"
     CDS             6160..7740
                     /gene="purH"
                     /locus_tag="WHR98_001244"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEZ2307928.1"
                     /translation="MSVIKRALISLSDKAGAVEFAQTLHKLGVEILSTGGTAKLLADA
                     GVPVIEVADYTGFPEMLDGRVKTLHPKIHGGILGRRDLDEHVAKMEEHGIGNIDLVCV
                     NLYPFAATIAKPNCTLEDAIENIDIGGPTMVRSAAKNWKHVAIVTDTADFPAIAAELE
                     ANNGALSDKTRFNLSRKAFSHTAQYDGMISNYLTSLSDDVLSGQPQIGEFPSRFNQSW
                     IKVQDMRYGENPHQRAAFYRDIDPAAGSLSAYKQLQGKELSYNNIADADAAWEAVKSF
                     DAPACVIVKHANPCGVAVAADTLTAYKLAYVTDTTSAFGGIIAFNREVDGETVKQITD
                     NQFMEVLMAPKFTTEALDIAAAKKNVRVLEIPLEAGANRFELKRVGGGLLVQTPDIHR
                     LSRADLKVVSKRQPTEQEWNDLLFVWNVAKYVKSNAIVFGKGGQTYGIGAGQMSRVDS
                     TRIAARKAQDANLDLNGACAASDAFFPFRDGVDVIAEQGIKAIIHPAGSMRDQEVFDA
                     ADEHGIAMVVTGVRHFRH"
BASE COUNT         1852 a         2269 c         2350 g         1829 t
ORIGIN      
        1 taaaaatcca tcttcaacac ggagatggat tttgtttgtt tcgttgattt tgtgtcagtt
       61 tcagatgtag gtgcttattc ggacgggccg tctgaaaatg tttgccccaa tgcaaaaaaa
      121 atcactgcaa accttcataa acggggtttg cagtgatttt ttcaaatcaa acagattgaa
      181 aacctgcgcc gaattgttca gacggcatta ttttttcagt tcggacagaa tgtcatccac
      241 ggttttcttc gcatctccga aacacatcac gctgttttcg ttgaagaaca gtgggttttg
      301 tacacctgcg tagccggtat tcatcgagcg tttgaagacg acgacttctt ttgccttcca
      361 cacttccaac acgggcatac ccgcaatcgg gctgttcggg tcggtttggg cggcggggtt
      421 gacggtgtcg ttcgcaccga tgaccaagac cacatcggtt tcggggaagt cgtcgttgat
      481 ttcgtccatt tccaaaacga tgtcgtaggg gactttggct tcggcgagca gtacgttcat
      541 atgaccgggc aggcggccgg cgacggggtg gatgccgaag cgtacttcgg tgccgttttt
      601 acgtaaaagc tcggtgattt cggcaacggg gtattgcgct tgtgcgactg ccataccgta
      661 gcccggggta atgatgacat tgtttgcgcc tttcagcatt tcggcaatat cggcagcttt
      721 gacttctcgg tattccccta tctcttggct gccggaagat aatgtgccgc tgtcgctgcc
      781 gaaaccgccg gcaattaccg agacaaacga gcggttcatg gctttgcaca taatgtagga
      841 cagaatcgcg ccgcttgagc cgaccagcgc gccggtaacg atgagcaggt cgttggagag
      901 catgaagcct gccgctgcgg ccgcccagcc ggagtaggag ttgagcatgg acacgaccac
      961 gggcatatct gcgccgccga tggaggcaac caagtgccag ccgaatgcga gggcaatcag
     1021 ggtcataatc agcaggatga agccgctacc gttaatgccg acgaatacga gcagcaacac
     1081 aaacgatacg gcgagcgcca gtgcgttgag cttgtgtttg gcgggcagtt gcagcgggct
     1141 gctgctgatt ttgccgttga gtttgccgaa tgcgaccagc gagccggtaa aggttaccgc
     1201 gccgatgaaa atgcccaaat agacttcgac cagatggatg gtgtgcatat cgtgcgaaac
     1261 gttgcccggc tcgatatagc tgttgaagcc gaccaaaacc gccgctaggc cgacgaagct
     1321 gtgcagcagg gcaatcagtt cgggcatttc ggtcatttcc acctttttgg ctttgtagat
     1381 gccgattgcc gcgccgatga gcatggcgat gatgatccag cccagtccgt gggtattgtc
     1441 ggaaaaaaca gttacaaaaa gggcgaccgc cataccggcg ataccggaat agcagccctg
     1501 tttggcggtt tcctgtttgg acagccccgc cagtgagaag atgaataaaa ttgcggcaac
     1561 gatatacgcc gctgttacga gtcctgaaga catggaaatt ctccgatttt cgatgatttg
     1621 tttttaatgc cgtctgaact gttcagacgg catctgtttc aagcagccgc gacaaacagc
     1681 ccgacggtgc aggcaaatcc gcccgcccac atcagcgagc gcaatgctgc tttgtctgcg
     1741 atgtagcacc agataaaggc gaggcggaac aggatgaaca ggccggcaag cgtgttgacg
     1801 gttgcttgtc cggcattgcc ggttgcgtgt gccgtcaaaa cggcggcggc aaacggtgca
     1861 aaggcttcaa aaccgttttg ctgcgcggcg tgggcacggg cggctgtgcc ttgcgtgcgc
     1921 gccagaaaat cgcgcggatt gtggttgtct ttaaaccgga atccgcccgc ttttttggca
     1981 tatgccgcac aaaaaagcgg caataggcag gcaatcagaa tgcaccaata ggcgaaagtc
     2041 atgctttatc ctttcctaaa catattcaac atgcggcgcg ttacgaagaa gccgccgaag
     2101 atgttgatgc tggcaatcag gatggcaaca aacgacagca gcgaaacgaa gccgttgccc
     2161 tgaccgattt gcagcagcgc gccgacgacg atgatgccgg agatggcgtt ggttaccgac
     2221 atcagcggtg tgtgcagcga gtggctgacg ttccagacga cgtagtagcc gatgacgcag
     2281 gcaaggacga agacgataaa gtggttcagg aatgctgcgg gtgcgaccgc gccgacccac
     2341 agtaccaaca cggcggcgat gacggcgggc gcgagttttt tccacaggga aacaggtttc
     2401 ggctcgggct tggcggcaga cgcggctttt tcagacggcg tttgctgcgg ctgggcggaa
     2461 acttgaatcg gcggaggcgg gaaggtgatt tcgccgtcgt gggtaacggt catgttgcgg
     2521 ataatcacgt cttcgaagtc cagcgtgatt tcgccgtctt tgttcgggct taacagcttg
     2581 gtcaggttaa ccaagttggt ggcgtaaagt tgggaagact gtccggcaag gcggtttgcc
     2641 atgtcggtgt aaccgatgat tttcacgccg ttgtcggtta cggacaattc gcccgggcgg
     2701 gtgagttcgc agttgccgcc cgtcgccgcc gccaaatcga cgatgacgga gccggatttc
     2761 atgctttcga ccatttcttt ggtaatcagc ttgggcgcgg gtttgcccgg aatggcggcg
     2821 gtggtgatga tgatgtccac ttctttcgcc tgttcggcaa atagcttcat ctcggcggcg
     2881 ataaattcgt cgctcatcac tttggcgtag ccgtcgccgc tgccgcccga ttcttgcggg
     2941 aagtcgagtt tcaggaactt gccgcccatc gattcgattt gttccgccac ttccaagcgg
     3001 gtatcgaatg cgcgcaccac tgcgccgagc gagtttgccg taccgattgc cgccagaccc
     3061 gccacacctg cgccaatcac caaaacctgc gcgggcggca ctttgccggc ggcggtgatt
     3121 tgaccggtga agaaacggcc gaaggcgttg gcggcttcaa tcacggcgcg gtagccgctg
     3181 atgtttgcca tcgaagacaa agcgtccaaa gcctgcgcgc gggaaatacg gggcaccatg
     3241 tccatcgcca gcgcattgac tttcttggcg cgcaaggctt cgaccaaagc ctcgttttgg
     3301 cgcggccaca ggaagctgac gatggtttga ccttcgttca aaagcggcag ctcgccttcg
     3361 gacggcgcgt taaccttata aatcaaaggg caggcccaaa ccgccgcttt gtcggcaacg
     3421 gttgcgcctg ctgtttggta agcggcatcg tccaaacttg ccgccaaacc tgcaccgctt
     3481 tcgacaacgg tttcaaagcc cagtttgccc agcagggcga cggtggcggg cgtacaggcg
     3541 acgcgggttt cgctggataa tgactcgcgt gggatgccga ttttcatctc tgaatccttt
     3601 ttcgggttgt ttatatgtat cgtgggttaa atttaaatcg gggcagggcg gagcaacgcc
     3661 gtaccagttt aaaaccgatt cacttcaaat gttaatatat tttagataat ccccttataa
     3721 cgaattttca tcaggctggc aatagttgcg gcattttccc gtgttgtccg acacatactg
     3781 ccgtttgttt ttgaagccgt tttccgattg cagtcccgcc cgccgtaaca ttctttgccg
     3841 tttcactata taatccgcat tttttgagcc accgccatgc cgcaagccct cgtcctccaa
     3901 tttccctccg ccgaagccct gccttccgac ttcccctccc gcctgcccga acctgattgc
     3961 gctgatgaaa agcgtatgcg ttttatcatt gaagaagggt tttctttaag cgaaaaagac
     4021 gcggcgttac ttggcagccg tcaaatcgac cacgccgtgt tgtcggatat ggattttggc
     4081 gaactcggtt tgattgtcag cgatatggat tcgacgctga ttaccatcga atgcgtcgat
     4141 gaaattgcgg caggcgtggg tttaaaagac aaggtagcgg aaattaccga gcgttcgatg
     4201 cgcggagagt tggatttcga gcagtcgttg cgcagccgcg ttgcgctgtt ggcgggattg
     4261 gacgaacaga ttttggcgga cgtttatgaa aacgttttga agctctcgcc cggtgcggaa
     4321 tttttgttgg acgaatgcaa aaggcacgat gtgaaattcc tgctggtgtc gggcggcttc
     4381 acgtttttta ccgaaaggct gcaacaacgc ctcggcttcg aataccagca cgccaatgtt
     4441 ttggaaattg aaaacggcag gctgaccgga cgtttgaaag gtagaatcat cgacgcgcag
     4501 gcaaaggcgg atttattgcg cgaataccgc agccgcctcg gattgcagcc gcatcaggtg
     4561 ttggcggtgg gcgacggtgc gaacgatatt ccgatgctca aagaaacggg cataggcgtg
     4621 gcttaccgtg ccaaaccgaa agtgcgggca gccgccgatg tctgtatcaa cttcggcggt
     4681 ttggagcgtg tacgcggcct gttcaggtag gcggatagga aacggatgtc gtctgaaaaa
     4741 cgtgttcaga cggcatttga acggcaggaa cgacagtggg acgcagaaaa ctttggtttg
     4801 ccctggcagc agcaggcgtt atcggcggtt tggtcggcat tgtgctgacg gaactgatgc
     4861 acttcataca gcatacggca tacggttatg gcgcggacgg cgtgtacact tcgttccgcg
     4921 aaggcgtggc acaggcttcc ggtatgcggc gcgttgccgt gctgacgctg tgcggcgcgg
     4981 tcgcaggcag cggctggtgg ttgctgaaac gtttcggcaa gccgcaaatc gaaatcaaag
     5041 ccgccttgaa acagccgttg caggggctgc cgtttctgac gacggttttc catgttctgc
     5101 tgcaaatcat aacggtcgga ctcggttcgc cgctcggacg ggaagtcgcc ccgcgcgaaa
     5161 tgaccgccgc gtttgctttt gccggcggca ggcggttggg tttggacgaa ggcgaaatgc
     5221 gcctcttgat tgcctgtgcg tccggtgcgg gtttggcggc cgtgtataac gtaccgctcg
     5281 cgtccacact tttcatcctc gaagccatgc tgggcgtgtg gacgcagcaa gccgtcgccg
     5341 ccgcattgct gacttcggtc attgccaccg ccgtcgcacg catcggctta ggcgacgtgc
     5401 agcagtatca tcccgccaac cttgccgtca gcacctcatt actttggttt tccgccgtca
     5461 tcggcccgat actgggcgca accgccgtct ttttccagcg taccgcccaa aagttcccct
     5521 ttatcaagcg cgacaacata aaaattattc ccttggcagt ctgcatgttt gcgctcatcg
     5581 gcgcgattgc cgtttggttt cccgaaattt tgggcaacgg caaagcaggc aaccaactga
     5641 cctttggcgg attgaccgac tggcaacaca gccttgagct gaccgccgtc aaatggctgg
     5701 ttgtcttgat ggcgttggcg gcaggcgcat acggcggact gattacgccg tctatgatgc
     5761 tcggcagcac catttctttt gcagccgccg ccgcgtggaa cagcgttttc cccgaaatgc
     5821 cgtctggaag cgcggcagtc gtcggagcgg cggtgtttct cggcgtatcg ctcaaaatgc
     5881 cgctgaccgc cattgtgttc gtattggaat tgacctacgc gccgctgtcc ctgctgctgc
     5941 ctttgtgcat cggcatggcg ggggcattgg gaacatcggg aaaaatgggc ttcaaatgaa
     6001 tgccgacaaa tgccgtctga aaggttttca gacggcattt ctttgtaaat tgtcaacaat
     6061 atctgcaaaa atctactgcc aaaaaactga aaatagcgga taataccgcc ccgaaaaagt
     6121 tcccctttcc ccatccaact gtcagaaaag gaagccccaa tgtccgtcat caaacgtgcc
     6181 ctgatcagcc tgtccgacaa ggcaggcgcg gtcgaatttg cccaaaccct gcacaagctc
     6241 ggtgtcgaaa tcctctccac cggcggcacg gcgaaactgc ttgccgatgc gggcgttccc
     6301 gtgattgaag tcgccgacta taccggcttc cccgaaatgc tcgacggccg cgtgaaaacg
     6361 ctgcatccga aaatccacgg cggtattttg ggtcggcgcg atttggacga acacgttgcc
     6421 aagatggaag aacacggtat cggcaacatc gaccttgtgt gtgtcaacct ctaccccttc
     6481 gccgccacca tcgccaaacc aaactgcaca ctggaagacg cgattgaaaa catcgacatc
     6541 ggcggcccga ctatggtgcg ttccgccgcg aaaaactgga aacacgtcgc catcgttacc
     6601 gacaccgccg acttccccgc cattgccgcc gaactcgaag ccaacaacgg cgcattgagc
     6661 gacaaaaccc gtttcaacct ctcacgcaaa gcattcagcc acaccgccca atacgacggc
     6721 atgatttcca actacctgac ctccctttca gacgacgttt tgagcggcca gccccaaatc
     6781 ggcgaattcc ccagccggtt caaccaaagc tggatcaaag tgcaagacat gcgctacggc
     6841 gaaaacccgc accaacgcgc cgcgttctac cgcgatattg accccgccgc aggcagcctt
     6901 tccgcttata aacagcttca aggcaaagaa ttgtcttaca acaacatcgc cgatgccgat
     6961 gccgcatggg aagccgtcaa atcctttgac gcgccagcct gcgtgatcgt caaacacgcc
     7021 aatccgtgcg gcgtcgccgt tgcagccgat acattgaccg cctacaaact cgcctacgtc
     7081 accgacacca ccagcgcgtt cggcggcatt attgccttca accgcgaagt ggacggcgaa
     7141 accgtcaaac aaattaccga caaccagttt atggaagttt tgatggcgcc gaagttcacc
     7201 accgaagccc tcgacatcgc cgccgccaag aaaaacgtgc gcgtattgga aataccgctc
     7261 gaagcaggcg cgaaccgctt cgaactcaaa cgcgtcggcg gcggactgtt ggtacaaacc
     7321 cccgacatcc accgcctcag ccgcgctgat ttaaaagtcg tctccaaacg ccaaccgacc
     7381 gagcaggaat ggaacgattt gctgttcgtc tggaacgtcg ccaaatacgt caaatccaac
     7441 gccatcgtct tcggcaaagg cggtcaaacc tacggcatcg gcgcaggcca aatgagccgc
     7501 gtggacagca cccgcatcgc cgcccgcaaa gcgcaagatg ccaatctcga cctcaacggc
     7561 gcatgtgccg cttccgatgc cttcttcccc ttccgcgacg gcgtggacgt gattgccgag
     7621 cagggcatca aagccatcat ccatcccgca ggctccatgc gcgaccaaga agtcttcgac
     7681 gcagcggacg aacacggcat cgccatggtc gtaacgggcg tgcgccattt caggcattaa
     7741 cgcagataaa caaggcaatg ccgtctgaag ggctttcaga cggcattttg cgctattttg
     7801 tgaaggtagg gatgacggtt cgggtattcc tgacagggtg gattttcaag gtgttgtata
     7861 gggtgtagga ggattcgtaa aaggtgggat gcagggtgtg cttcagcccg ctgcatcaaa
     7921 aatttttgga gaaccggcgg gagtcggcgg ttttggtttc ggcggggacg gtggaaatgg
     7981 gtaacattga cggaatcgac ggaagcggtg ggctgaagcc cacccttgta tattggaatc
     8041 actgtatcat agcaacaaac cgcccggccg ccacccgcgc ccacccaagg cacacaaccg
     8101 ttgcgtagct cagggagcgg cagggcaacc catcgacaca accggacagt tgccggacaa
     8161 cacaaccgaa tgcaaggcag gtttatgatg agtacccaat accattacgc aggtatagtg
     8221 aattaaatct aaaccagtac agcgttggtt cgccttagct caaagagaac gattctctaa
     8281 ggtgctgaag caccaagtga
//
LOCUS       DAWGNT010000081         8249 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.081, whole genome shotgun sequence.
ACCESSION   DAWGNT010000081 DAWGNT010000000
VERSION     DAWGNT010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8249
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.081"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(271..2961)
                     /gene="glnE"
                     /locus_tag="WHR98_001245"
     CDS             complement(271..2961)
                     /gene="glnE"
                     /locus_tag="WHR98_001245"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HEZ2307929.1"
                     /translation="MSDNRLDTARRHSLFLARQLDNGKLKPEIFLPMLDKVLTEADFQ
                     AFADWDKIRAEENEEELARQLRGLRRYVVSQIIVRDINRISDLNEVTRTITLFADFAV
                     NTALDFAYAYYRDMYGTPIGRYTKSPQHLSVVAMGKAGGYELNVSSDIDLIFVYPESG
                     DTDGRRERGNQEFFTKVGQKLIALLNDITADGQVFRVDMRLRPDGDSGALVLSETALE
                     QYLITQGREWERYAWCKGRVVTPYPNDIKALVRPFVFRKYLDYGAYEAMRKLHRQIRS
                     EVSKKGMADNIKLGAGGIREVEFIAQIFQMIRGGQMRALQLKGTQETLKKLAETGIMP
                     SENVETLLAAYRFLRDVEHRLQYWDDQQTQTLPTSPEQRQLLAESMGFDSYSAFSDGL
                     NVHRNKVNQLFNEILSEPEEQTQDNSEWQWAWQDKPDEEGRRCRLKAHGFDAETVAAR
                     LDQIRHGHKYRHLSAHAQPRFDAVVPLFVQAAAAQSNPTDTLMRLLDFLENISRRSAY
                     LAFLNEHPQTLAQLAQIMGQSSWVAAYLNKYPILLDELISAQLLDTAFDWQALAAALS
                     DDLKACGGDTEAQMDTLRRFQHAQVFRLAVQDLAGLWTVESLSDQLSALADTILAAAL
                     LCAWADMSKKHRDTPQFAVVGYGKLGGKELGYASDLDLVYLYDDPHPDAGDVYSRLAR
                     RLTNWLSAATGAGSLYETDLRLRPNGDAGFLAHSIAAFEKYQRENAWTWEHQSLTRAR
                     FICGTSEIQTAFDRIRTEILTAERDQTALAGEIIEMREKMFPTHPPADSNVKYARGGV
                     VDVEFIVQYLILAHARQYPQLLDNYGNIALLNISADCGLIDKTLAGQSRTAYRFYRRQ
                     QHNTKLRDAAKTEVTGELLAHYGNVRKLWREVFGEEAATA"
     gene            complement(3141..3476)
                     /locus_tag="WHR98_001246"
     CDS             complement(3141..3476)
                     /locus_tag="WHR98_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307930.1"
                     /translation="MTVDKEQVEKMIYSENKQSVIDGMLGMTFSSEEDEIPWISEKLT
                     ELSKHKDLDIARLSLTCFGHLARMHENIGDCDKVIALLLSKQGDPDFQGFAEDALDEI
                     SLFIFKKRP"
     gene            complement(3730..4203)
                     /locus_tag="WHR98_001247"
     CDS             complement(3730..4203)
                     /locus_tag="WHR98_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2247 family protein"
                     /protein_id="HEZ2307931.1"
                     /translation="MNLDLTAQKVRLSWKDILWGYENKYLGWADVAAYARKMTISYHD
                     ERVFKLSLINKSNILELKPVLEDLASEMRDYSPKNWLYVLLSDVFHRKEEFEDPLGEV
                     EKIYADFDYPEEIESFVRYMPPKDGYIPSAHSYEENIARLYSHWEHYLNNGGGQG"
     gene            complement(4282..4563)
                     /locus_tag="WHR98_001248"
     CDS             complement(4282..4563)
                     /locus_tag="WHR98_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307932.1"
                     /translation="MENGQRNNRFPLEKRIFYLEHSGRYLMICALSDYSQNKHTAVMA
                     NLLHPDDKTDWRNLDDLFNELVLEELRASFMEWYPTVEEAISRHLEDFS"
     gene            complement(4650..4973)
                     /locus_tag="WHR98_001249"
     CDS             complement(4650..4973)
                     /locus_tag="WHR98_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307933.1"
                     /translation="MFKDELNEFIRLISDPESELDEWYLSDFKDEHIWEMQSYEAFSC
                     LREAVPYLFAYPRYGYELLEIISALKETSDTTELFYEPGIVPLLIDLYKEDSYLVNMV
                     KRIFK"
     gene            complement(5112..5291)
                     /locus_tag="WHR98_001250"
     CDS             complement(5112..5291)
                     /locus_tag="WHR98_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307934.1"
                     /translation="MPSERTFCRSDGIFISFSCLPPFENPLRAALFETKQTPAANRTI
                     LIRSQSKSGGKLLNI"
     gene            complement(5307..6314)
                     /locus_tag="WHR98_001251"
     CDS             complement(5307..6314)
                     /locus_tag="WHR98_001251"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEZ2307935.1"
                     /translation="MYPLARRILFALDAEKAHHFTLDALNMVYKLGLIPVTGNRTKPV
                     KLMGLDLPNPVGLAAGLDKNGEYIDALGALGFGFIEIGTVTPNPQPGNPQPRLFRVPE
                     YQGIINRMGFNNHGIDAMIQNIEKSKFSGVLGINIGKNAVTPIENAADDYLICLEKAY
                     AHASYITVNISSPNTKNLRALQGGDELSALLEALKNKQAQLASVHGKYVPLAVKIAPD
                     LDEAQIEDIAHVVKSVEMDGIIATNTTIDKSSLGSHPLAGEQGGLSGLPVHEKSNRVL
                     KLLADHIDGKLPIIGVGGIMEGRDAAEKIRLGATAVQVYSGLIYKGPALVKECLKALA
                     Q"
     gene            6546..6782
                     /gene="acpP"
                     /locus_tag="WHR98_001252"
     CDS             6546..6782
                     /gene="acpP"
                     /locus_tag="WHR98_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEZ2307936.1"
                     /translation="MSNIEQQVKKIVAEQLGVNEADVKNESSFQDDLGADSLDTVELV
                     MALEEAFGCEIPDEDAEKITTVQLAIDYINAHNG"
     gene            6938..8185
                     /gene="fabF"
                     /locus_tag="WHR98_001253"
     CDS             6938..8185
                     /gene="fabF"
                     /locus_tag="WHR98_001253"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEZ2307937.1"
                     /translation="MSQRRVVITGLGQVSPVGNTVAEAWDTLLAGKSGIGAITRFDAS
                     DINSRVAGEVRGFDIGQYISAKEARRMDVFIHYGIAAALQAIADSGLDDVENLDKDRI
                     GVNIGSGIGGLPSIEVTGKAVIEGGARKINPFFIPGSLINLISGHVTILKGYRGPSYG
                     MVSACTTGAHAIGNSARLIKYGDADIMVAGGAEGAISTLGVGGFAAMKALSTRNDDPA
                     TASRPWDKGRDGFVIGEGAGILVLEELEHAKKRGAKIYAEIVGFGMSSDAYHITAPNE
                     EGPALAVTRALKDAGINPEDVDYVNAHGTSTPLGDANETKALKRAFGEHAYKTVVSST
                     KSMTGHLLGAAGGVEAVYSILAIHDGKIPPTINIFEQDVEAGCDLDYCANEARDAEID
                     VAISNSFGFGGTNGTLVFKRFKG"
BASE COUNT         1911 a         2171 c         2121 g         2046 t
ORIGIN      
        1 ctgaaaagta gaatgcgcta ttttaatgga aacggcgggg ttttaaacgg ttcttatttg
       61 tttgttttga tttttgcttg ggtaaaaaat cccatcattc ccacaaaaac agaagcctga
      121 aatcccgtca ttcccgcgaa agaggaatcc ggtttttggg tttcagccat tcccgataaa
      181 tcgctttagc tctgccgcaa ccttaaaacg gcacggtacg aaaataccgt ctgaaaccca
      241 gattgtcagg cttcagacgg cattttttgt tcaggcggtt gccgcttctt cgccgaacac
      301 ttcccgccac aatttcctga cattgccgta atgtgccaac agttcgccgg ttacttcggt
      361 ttttgccgcg tcgcgcagtt tggtgttgtg ctgctgccgg cggtagaagc gataggcggt
      421 gcggctttgt ccggcgaggg ttttgtcaat caaaccgcag tcggcggaga tgtttaagag
      481 ggcgatgttg ccgtagttgt ccaagagttg cggatactgg cgggcatggg caagtatcag
      541 atattggacg ataaattcga catcgaccac gccaccgcgc gcgtatttga cgttgctgtc
      601 ggcaggcggg tgggtgggga acattttttc gcgcatttcg atgatttcgc ctgccaaggc
      661 ggtttggtcg cgttcggcgg tgaggatttc ggtgcggatg cggtcgaagg ccgtctgaat
      721 ttcggacgtg ccgcagatga agcgggcgcg ggtaagggat tggtgttccc acgtccaggc
      781 gttttcgcgc tggtattttt caaaggcggc gatgctgtgg gcgaggaaac cggcgtcgcc
      841 attagggcgc aggcgcaggt cggtttcgta gaggctgcct gcgccagtgg cggcggaaag
      901 ccagttggtc aggcgacggg cgaggcggct gtacacgtcg cctgcgtcgg ggtggggatc
      961 gtcgtagagg tagacgaggt cgaggtcgga ggcgtagccg agttctttac cgccgagttt
     1021 gccgtagccg acgacggcga attgcggtgt gtcgcggtgt tttttggaca tgtccgccca
     1081 tgcgcacagc agggcggcgg cgaggatggt gtcggcgagg gcggagagtt ggtcggagag
     1141 ggattctacc gtccacagtc cggcgaggtc ttggacggcg agacggaaga cttgggcgtg
     1201 ctggaagcgg cgcagggtgt ccatttgcgc ttcagtatcg ccgccgcagg ctttgaggtc
     1261 gtctgaaagg gcggcggcga gcgcctgcca atcaaacgcg gtatccaaaa gctgcgcgct
     1321 gatgagttcg tccaacaaaa tcggatattt gttcagatac gccgccaccc aagaactttg
     1381 gcccataatc tgcgccagtt gcgccaaggt ttgcggatgt tcgttgagga aggcgagata
     1441 ggcggatcgg cggctgatgt tttcgagaaa atccaacagc cgcatcaatg tatcggtcgg
     1501 gttgctttgc gctgccgccg cctgtacgaa cagcggcaca accgcatcga aacgcggctg
     1561 ggcgtgtgcg gaaagatggc ggtatttatg gccgtggcgg atttggtcga gccttgcggc
     1621 gacggtttcg gcatcgaacc cgtgcgcctt cagacggcat cgccgccctt cttcgtcggg
     1681 tttgtcctgc catgcccatt gccattcgct gttgtcttgc gtttgctctt cgggttcgct
     1741 caaaatttcg ttgaacaact gattgacttt gttccgatga acattgagac cgtctgaaaa
     1801 agcggaataa ctgtcgaaac ccatgctttc agcgagcagt tgccgctgtt caggcgaagt
     1861 gggcagggtt tgggtttgtt ggtcgtccca gtattgcagg cggtgttcga cgtcgcgcag
     1921 gaagcggtag gcggcaagca gggtttcgac gttttcagac ggcatgatcc cggtttcggc
     1981 aagtttcttc agcgtttcct gcgtgccttt cagttgcagc gcacgcattt ggccgccgcg
     2041 tatcatctgg aaaatctggg cgataaattc gacttcgcgg atgccgcccg cgccgagttt
     2101 gatgttgtcc gccatgcctt ttttgctgac ttcgctgcgg atttggcggt gcagcttacg
     2161 catcgcctca tacgcgccgt aatccagata tttgcggaac acaaaggggc gcaccagtgc
     2221 tttgatgtcg ttcggatacg gcgtaaccac gcgacctttg caccacgcgt agcgttccca
     2281 ttctcgcccc tgtgtaatca aatattgctc cagcgcggtt tcgctcaata ccaacgcgcc
     2341 cgaatcaccg tccggccgca gccgcatatc gacgcggaac acttgcccgt cggcggtaat
     2401 gtcgttcagc aacgcaatca gtttctgccc gactttggtg aaaaactcct gattgccgcg
     2461 ttcgcgcctg ccgtcggtgt cgcccgattc gggatagacg aaaatcaaat cgatgtcgga
     2521 agacacgttc aactcatagc cgcccgcctt gcccatcgcc accacgctca aatgctgcgg
     2581 cgatttggta taacgcccga tcggcgtgcc gtacatgtcc cgataatagg cgtaggcaaa
     2641 atccagcgcg gtattgacgg caaaatcggc aaacagcgta atcgtgcggg ttacttcgtt
     2701 caaatcgctg atgcggttta tatcgcgcac gataatctgc gacaccacat aacggcgcaa
     2761 cccgcgcaac tgccgcgcca attcttcctc gttttcttcc gcacggattt tgtcccagtc
     2821 ggcaaaggct tggaaatccg cttcggtcaa aaccttgtcc agcataggca ggaaaatttc
     2881 gggcttgagt ttgccgttgt cgagctggcg ggcgaggaag agggaatggc ggcgggcggt
     2941 gtcgaggcgg ttgtcggaca tttcggattc cgtttgaaaa aatggcagga agatgatggc
     3001 ggattcactt caaatcagga cagggcgagg ggatgccgta ccggtttaaa gtcaagccac
     3061 tatatcatag caaccttcga tgccgtctga aagccggata acgcttcaga cggcatcgga
     3121 ttgacaggtt taatccgcgc ttacggacgc tttttaaata taaataaaga aatctcgtct
     3181 aacgcatctt cggcaaaacc ttgaaaatcc ggatcacctt gttttgagag caataaagca
     3241 atcactttat cgcaatcgcc gatattttca tgcatcctgg cgagatgtcc gaaacaggtt
     3301 aatgacaatc tggcaatatc caagtcttta tgtttcgaca actccgtcaa cttctcggaa
     3361 atccagggga tttcatcctc ctccgagctg aaggtcatac cgagcatacc gtcaataaca
     3421 ctctgtttat tttcagaata aatcatcttt tctacttgtt ccttatcaac cgtcattttt
     3481 taatttttcc ttttaaatta accaatcctg ctttctttaa agcatttttg ccgggcggca
     3541 ggattgttat caaacatttg cacccggtcc ggcaaaacga tttccttatc ggtttatcgg
     3601 caacgatgcg ggcggttcgg gttttgccgc ttccggaatg cagcccgccc ccgctttcaa
     3661 atcttccgct ctaatccgtt tgccgtctga aggccggata atgcttcaga cggcatcgga
     3721 ttgccggttt taaccctgcc ctccgccgtt gttcaaatag tgttcccagt gagaatataa
     3781 ccgggcaata ttttcttcat agctgtgggc agaaggaata taaccgtctt taggcggcat
     3841 atatctgaca aatgattcta tttcttccgg ataatcaaaa tctgcataaa ttttttcaac
     3901 ttcccccaaa ggatcctcaa attcttcttt tctatggaat acatcgctta agaggacgta
     3961 cagccaattt ttaggggaat aatccctcat ttccgaagcc aaatcttcca gaacaggctt
     4021 taattcaaga atattggatt tgttgattaa agatagtttg aacacacgtt catcatgata
     4081 tgaaatcgtc atttttcggg cataagctgc cacatcggcc caacccaagt atttattctc
     4141 atatccccac agaatatcct tccaagaaag acggactttt tgcgcggtta aatcaaggtt
     4201 cattttttac tccggttgcc tgcttcgtgt tcacgcgtcg gtttgcctgc accgtcattc
     4261 cgccccttcc gattatgcct gttacgaaaa gtcttccaaa tgacggctga ttgcctcttc
     4321 aacagtcgga taccactcca taaatgaagc ccgcaattcc tctaaaacca actcattgaa
     4381 taaatcatcc aaattccgcc aatccgtttt atcatccgga tggagaagat ttgccataac
     4441 ggcagtatgt ttgttttggg aataatccga taaggcgcaa atcatcagat accgccccga
     4501 atgctccaga taaaaaattc gtttttccaa aggaaaccgg ttattccgtt gcccgttttc
     4561 catttttcat cctttttaac gtatcggctt ccgcgtcctt caaattgagt tacctgcctt
     4621 ccgccaagca aacgcccgcg cccctttcat catttgaata tccgtttgac catatttacc
     4681 agataactat cttctttata taaatcaatc agcaaaggca cgatacccgg ctcataaaat
     4741 aattctgtcg tatcagatgt ttcttttaac gcggaaatta tctccaacag ttcatacccg
     4801 tatcggggat aagcaaacaa ataggggact gcttcccgca aacatgaaaa tgcttcgtaa
     4861 ctttgcattt cccatatatg ttcatcttta aaatcactca aataccattc atccaattca
     4921 ctttccggat cggatatcaa tcggataaat tcatttagtt cgtccttaaa catatcaaat
     4981 ccttaaatat aaaatctttt gattatccgc cgtatcctta ttttccacat catgaatttc
     5041 aacgccgttc atattttgcg ttttctcaaa ccgtccacca cggcataaaa ttattttttc
     5101 atatcaatta tttatatgtt taacaactta ccgccggact tgctttggct gcgtatcaag
     5161 attgtccggt tcgcggcggg cgtttgcttt gtttcaaaca gggcggcgcg taagggattt
     5221 tcaaagggcg gcaggcagga aaaggaaata aaaatgccgt ctgaacggca aaacgtgcgt
     5281 tcagacggca ttttgtgcgg gacgcgtcat tgcgccaaag ccttcaaaca ttctttgacc
     5341 aatgccggac ctttgtatat caatccgctg tacacctgga cggcagttgc gcccaagcgg
     5401 attttctctg ccgcgtccct gccttccata atgccgccta cgccgataat cggcagcttg
     5461 ccgtcgatgt ggtctgccaa cagcttcaac acccgattac ttttttcatg aacgggcagc
     5521 ccgctcaaac cgccctgctc gcctgcgagc ggatggctgc cgagacttga tttgtcgatg
     5581 gtggtattgg tagcgatgat gccgtccatt tcgacggatt tgacaacgtg ggcgatgtct
     5641 tcgatttgtg cttcatccaa atcgggggcg attttgacgg cgagcgggac gtatttcccg
     5701 tgtacagagg caagctgtgc ctgtttgttt ttcaaagcct caagcaatgc gctcaactcg
     5761 tcgccacctt gcagcgcgcg gaggttttta gtgttgggcg aggaaatatt gacggtaatg
     5821 taacttgcgt gtgcgtaggc tttttcgagg cagattaaat aatcatcggc agcgttttca
     5881 atcggtgtta cagcgttttt gccgatgttg atgcccaata cgccgctgaa tttacttttt
     5941 tcgatgtttt gaatcatggc atcgatgccg tggttgttga agcccatgcg gttgatgatg
     6001 ccttgatatt cgggaacgcg gaagaggcgc ggctgcgggt tgccgggctg cgggttgggc
     6061 gttaccgtgc cgatttcgat gaaaccgaag ccgagcgcgc ccaatgcgtc tatatattcg
     6121 ccgtttttat cgagtccggc ggcaagcccg acagggttgg gcaaatccaa acccatcagt
     6181 tttacaggtt tggtacggtt gccggttacg ggaatcagac ccaatttata aaccatgttg
     6241 agcgcgtcga gcgtgaagtg gtgggctttc tcggcatcga gtgcaaacag gatgcggcgg
     6301 gcaagtggat acatgacagg gctttctgct tcagatggaa atgccgtcat tttaaccgaa
     6361 atcccgtcaa acatacggca cacaggtcaa acttgaacga caaaacccgc cgcacccaaa
     6421 aatgtacaaa tcggcaaata ttgatataat agtcattaga tagaaaactc tattaaaagt
     6481 cggtacaata ccaccgattt atttccctta aacaacctgc cgcaaggcat aaaggaacga
     6541 ctgatatgtc aaacatcgaa caacaagtta aaaaaattgt tgctgaacaa ctgggcgtaa
     6601 acgaagccga cgtgaaaaac gaatcttctt tccaagacga cttgggcgcg gattctttgg
     6661 acaccgtgga gctggttatg gctttggaag aagcattcgg ctgcgaaatc cccgacgaag
     6721 atgccgaaaa aatcaccacc gtccaactgg ctatcgacta catcaatgcc cacaacggct
     6781 aaccggtcgt cgcccgacac aacagcctct gctgcaccgc gcaatagagg cttttccctt
     6841 atatggcaaa ctgtttgaac ccctgccgca aattacagac ggcatctgca cgacagccgc
     6901 atatgccccc attccgacaa ccaacagcga ggttatcatg agtcagagaa gagtagtcat
     6961 tacaggctta ggtcaggttt cccctgtcgg caacactgtc gcagaggctt gggacaccct
     7021 gctcgccggc aaaagcggca tcggcgcgat tacccgcttt gacgcatccg acatcaacag
     7081 ccgtgtcgcc ggcgaagtgc gcggtttcga catcggacaa tacatcagcg cgaaagaagc
     7141 gcgccggatg gacgtattca tccactacgg cattgccgcc gcattgcagg caatcgccga
     7201 ttcgggcttg gacgatgtgg aaaacctcga caaagaccgc atcggcgtga acatcggttc
     7261 cggcatcggc ggactgccca gcatcgaggt caccggcaaa gccgtaatcg aaggcggcgc
     7321 gcgcaaaatc aaccctttct ttatccccgg ttcgctgatc aacctgattt ccggacacgt
     7381 taccatcctc aaaggctacc gcggcccgag ctacgggatg gtttccgcct gtaccaccgg
     7441 cgcgcacgcc atcggcaatt ccgcccgact gatcaaatac ggcgacgcgg acataatggt
     7501 tgccggcggc gcggaaggcg caatcagcac tttgggcgtg ggcggttttg ccgcgatgaa
     7561 agccctctcc acccgcaacg acgaccccgc caccgcttcc cgtccgtggg acaaaggccg
     7621 cgacggcttc gttatcggcg aaggcgcggg catattggtg ttggaagaat tggaacacgc
     7681 caaaaaacgc ggcgcgaaaa tctacgccga aatcgtcggc ttcggcatga gttccgatgc
     7741 ttaccatatc accgcgccga acgaagaagg ccccgccctt gccgttaccc gcgcgctgaa
     7801 agatgccggc atcaatcccg aagacgtgga ttacgtcaac gcgcacggca cgtccacccc
     7861 cttgggcgat gccaacgaaa ccaaagccct caaacgcgcg ttcggcgaac acgcctacaa
     7921 aaccgtcgtc agctcgacca aatccatgac cggccacctg ctcggcgcgg cgggcggcgt
     7981 ggaggccgtg tacagcattt tggcgataca cgacggcaaa atcccgccga ccatcaacat
     8041 ttttgaacaa gacgttgaag ccggctgcga tttggactac tgcgccaacg aagcgcgcga
     8101 cgcggaaatc gacgttgcca tttccaactc cttcggcttc ggcggcacca acggcacgct
     8161 ggtcttcaaa cgcttcaaag gctgattccg caaagccgcc gccgacatcg aaatgccgtc
     8221 tgaaaccgtt tcagacggca tttttatag
//
LOCUS       DAWGNT010000082         8205 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.082, whole genome shotgun sequence.
ACCESSION   DAWGNT010000082 DAWGNT010000000
VERSION     DAWGNT010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8205
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.082"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            40..2088
                     /locus_tag="WHR98_001254"
     CDS             40..2088
                     /locus_tag="WHR98_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEZ2307938.1"
                     /translation="MIPAYIPLRSFGIRKIPNITQFLPEYSLNKTVFNAQTIIGWGLR
                     PTTHQARAFAQSHGLPFVALEDGFLRSLGLGVAGYPPFALVYDDIGIYYDTTRPSRLE
                     QLILAANMPSEMLNQAQQAIDLILTHRLSKYNHALDFSDGLVQDSKNIVLVIDQTFGD
                     MAIQYGGADEATFRQMFQTALAENPDAEIWVKTHPDVLSGKKQGYLTDLAQQPRVRLL
                     AEDINPISLLQAVDKVYCVTSQMGFEALLCGKPLVTFGLPWYAGWGVSDDRHPEINRL
                     VQTQRRATRNLLQLFAAAYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDKLRGELY
                     CVGMSLWKRAVAKPFFNVPSCRLKFISSTQKLARVKLSDDARILAWGNGKEAIVRFAE
                     QHHIPLLRMEDGFIRSVGLGSNLVPPLSLVTDDMGIYFNAEAPSRLEHILQNQNFDDQ
                     DFQTALKLQKMLTENHISKYNVGNSDFTAPSTDKTVILVPGQVEDDASIRYGSPQIYH
                     NLDLLRTVRERNPNAYIIYKPHPDVVSGNRIGHISPEDAARYADQTAEQADILTCLQY
                     ADEIHTMTSLTGFEALLRGKKVSCYGLPFYAGWGLTQDLLPIPRRSRRLELWQLIAGT
                     LIHYPDYIHPETHQAINAETAAQILIRQKNMQKNNNGLHRGCFAKKLGKIKQLYRSFK
                     "
     gene            2225..3484
                     /locus_tag="WHR98_001255"
     CDS             2225..3484
                     /locus_tag="WHR98_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEZ2307939.1"
                     /translation="MKQTVLKNNLQNLLESAENILLLQGPVGDFFLRLADWLTANGKT
                     VHKFNFNAGDDYFYPPTQAHTVVFNDNYDAFPEFLQEYITQHHIQAVVCFGDTRPYHV
                     IAKRIANENQASFWAFEEGYFRPYYITLEKDGVNAFSPLPRRADFFLEQFPKLAQQEY
                     KAPTPVRGGFTPMAKNAIRYYIELFRNLRKYPDYIHHRAPNAGHYLKPWSLSILKRLN
                     YYIEDIQIAKRVEAGKYGKFFIVPLQVFNDSQVRIHCDFPSVRSFLLHVLSSFAEHAP
                     ADTNIIIKHHPMDRGFIDYWRDIKRFIKEHPELQGRVIYVHDVPLPVFLRHGLGMVTI
                     NSTSGLSGLIHNMPVKVLGRAYYDIPGITDQNTLAEFWNHPTPPDKELFHAYRMYHLN
                     VTQINGNFYSQVFFPNKKTSDSSTPAT"
     gene            3851..5257
                     /locus_tag="WHR98_001256"
     CDS             3851..5257
                     /locus_tag="WHR98_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HEZ2307940.1"
                     /translation="MTAAPDILYRQAAALLEQSNTAQALPLLQQAAEQGYAEAAFVLG
                     NHLLQNGQPEQALSWLEAAAAQRHPKALFSLLQQREHNGTPTGQLLNDYAWLGEQGHS
                     EAQLILMRYHAQRNDPQSLYWAELAAARYAAPAYYHLARHHQRQGDVETAIEQYEKAA
                     ALGVTAACWQLGQIYFYGTGVSPNHAQAEHYLEPAAQAGHIAAQTLLADLLAAQRKPE
                     ALEWYRRAADKEQAEAQSKLAQYALTGELSERDPFQAARYAKAAAEKNHPEALKIMGD
                     LYRYGLGIKADNHIAQDYYHRAAALGSAAAAQKLISDAALYHPQQYEQIKTAALQQQQ
                     TETIYRLAEAQACAIGRPADYNAARKNYMEAAGFHHKNAAAALGRIYHYGLGTAQDPR
                     AAAHWYAIAAEQNHPSAQYHLACFYYHGQGVGCHVPTACYWLQAAIGNGHTSAESLIS
                     LLEQWRREAHHAIGQKAV"
     gene            5475..6689
                     /gene="gltS"
                     /locus_tag="WHR98_001257"
     CDS             5475..6689
                     /gene="gltS"
                     /locus_tag="WHR98_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HEZ2307941.1"
                     /translation="MEWEFNSYYTLIAATLVLLVGKFLVQKIKFLRDFNIPEPVAGGL
                     VAAIILFALHEAYGVSFKFEKPLQNAFMLIFFTSIGLSADFSRLKAGGLPLVVFTAIV
                     GGFILVQNFVGVGLATALGLDPLIGLITGSVSLTGGHGTSGAWGPNFETQYGLVGATG
                     LGIASATFGLVFGGLIGGPVARRLINKMGRKPVENKKQDQDDNADDVFEQAKRTRLIT
                     AESAVETLAMFAACLAFAEIMDGFDKEYLFDLPKFVWCLFGGVVIRNILTAAFKVNMF
                     DRAIDVFGNASLSLFLAMALLNLKLWELTGLAGPVTVILAVQTVVMVLYATFVTYVFM
                     GRDYDAAVLAAGHCGFGLGATPTAVANMQSVTHTFGASHKAFLIVPMVGAFFVDLINA
                     AILTGFVNFFKG"
     gene            6788..7804
                     /locus_tag="WHR98_001258"
     CDS             6788..7804
                     /locus_tag="WHR98_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1311 domain-containing protein"
                     /protein_id="HEZ2307942.1"
                     /translation="MYRKLIALPFALLLAACGREEPPKALECANPAVLQGIRGNIQET
                     LTQEARSFAREDGRQFVDADKIIAAAYGLAFSLEHASETQEGGRTFCIADLNITVPSE
                     TLADAKANSPLLYGETALSDIVRQKTGGNVEFKDGVLTAAVRFLPVKDGQTAFVDNTV
                     GMAAQTLSAALLPYGVKSIVMIDGKAVKKEDAVRILSGKAREEEPSKPTPEDILEHNA
                     AGGDAGVPQAAEGAPEPEILHPDDGERADTVTVSRGEVEEARVQNQRAESEITKLWGG
                     LDTDVQKELVGEQRKWAQEKISNCRQAAAQADRQEYAEYLKLQCDTRMTRERIQYLRG
                     YSID"
     gene            7815..8012
                     /locus_tag="WHR98_001259"
     CDS             7815..8012
                     /locus_tag="WHR98_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307943.1"
                     /translation="MTTVPKSRIPVKPLPEKTTDEAKVEKWRQLGAEHGLSGEWAVAA
                     RLGENGFTEEQMENIANLFGR"
     gene            8030..8179
                     /locus_tag="WHR98_001260"
     CDS             8030..8179
                     /locus_tag="WHR98_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307944.1"
                     /translation="MPSETLLSVSDGILTNTVRRRKTAVFSCVSYADVSTHKTAHKAL
                     PYVPS"
BASE COUNT         2089 a         2355 c         1910 g         1851 t
ORIGIN      
        1 aagatattat attgtcagta atattttttc ctatttattg tgattcctgc ctacattcct
       61 cttcgctctt tcggtatacg taaaattccg aatattacgc aatttctacc ggaatattca
      121 cttaacaaaa ccgtattcaa cgcccaaacc atcattggct ggggcttacg cccgaccacc
      181 caccaagcac gtgcttttgc acaatcacat ggcttgccgt ttgtagcctt ggaagacggt
      241 tttttacgct cactgggctt aggcgtggcc ggttatccgc ccttcgcact ggtttacgac
      301 gatatcggca tctattacga cacaacccgc ccatcgcgtt tggagcagtt gattttagcc
      361 gcaaacatgc cgtctgaaat gcttaaccaa gcgcagcagg ccattgattt gattttgacg
      421 caccgtttgt ctaaatataa ccatgctctg gatttttcag acggcctcgt acaagacagc
      481 aaaaacattg ttttggtaat tgatcaaact ttcggcgata tggcgattca atatggcggc
      541 gcagatgaag ccacattccg ccaaatgttt cagacggcct tagccgaaaa tcctgatgcg
      601 gaaatctggg tcaaaaccca tcccgatgta ttgagcggca agaaacaggg ttaccttact
      661 gatttggcac agcagccgcg tgtgcgttta ttggctgaag acattaatcc gatttcgctg
      721 ctgcaagcgg tggacaaagt gtattgcgtg acctcgcaaa tgggttttga agccttgttg
      781 tgcggcaagc ctttggtaac gtttggtttg ccgtggtatg ccggctgggg tgtaagcgac
      841 gaccgccatc ctgaaatcaa ccgccttgtt caaacccaac gccgcgccac ccgcaacttg
      901 ctgcagctct tcgccgcagc ctatctgcaa tacagccgct acctcaaccc caataccggc
      961 gaagcaggca gcctctttga tgtcatcgac tatctggcga cggtcaaacg taaaaacgac
     1021 aaattgcgtg gcgagttata ttgcgtcggt atgtctttgt ggaaacgcgc ggttgccaaa
     1081 ccgttcttta acgtaccctc ttgccgtctg aaatttatct cttccaccca aaaactggca
     1141 agggtcaaac tgtccgacga tgcacgcatc ctggcttggg gcaacggcaa agaggccatc
     1201 gtccgctttg ccgaacaaca ccacatcccc ctgctgcgca tggaagacgg ctttatccgc
     1261 tcggtcggac tcggctccaa cttagtgccg ccgctgtcgc tcgttaccga cgatatgggt
     1321 atttacttca atgccgaagc cccatcccgc cttgaacaca tcctgcaaaa ccaaaacttc
     1381 gacgatcaag actttcagac ggccttgaag ttgcaaaaaa tgctgaccga aaaccatatc
     1441 agcaaataca acgtcggcaa ctcagacttt accgccccat caaccgacaa aaccgtgatc
     1501 ctcgttcccg gtcaggttga ggatgatgcg tctatccgct atggttcgcc ccaaatctat
     1561 cacaatctgg atttgctccg taccgtacgc gaacgaaacc ccaatgccta tatcatctac
     1621 aaaccgcatc ccgatgtagt cagcggtaac cgcatcggcc atatttcccc tgaagatgct
     1681 gcacgatatg ccgaccaaac cgccgaacaa gccgacatcc tgacctgtct ccaatacgca
     1741 gacgaaatac ataccatgac ttcgctgacc ggttttgaag ccttgttgcg cggcaaaaaa
     1801 gtcagctgct acggcctgcc tttttacgca ggctgggggc ttacccaaga tctgctcccc
     1861 atcccgcgcc gtagccgcag acttgagctt tggcagctga ttgccggcac gctcatccac
     1921 tatcccgact acatccaccc cgaaacccat caggccataa atgcggaaac cgcagcccaa
     1981 atcctgatac gacaaaaaaa tatgcaaaaa aacaacaacg gattacatcg cgggtgcttt
     2041 gccaaaaaat taggtaaaat caaacaacta tatcgatctt tcaaataaat accatcaaag
     2101 ttaacgatgc gtcataaact tgcctctatt gcggcatcat tgcctttgca tcgttaattc
     2161 tcttggcgta tgcttgaaag ttcaacctaa aactattaca taaaaaacaa aaccacattg
     2221 caacatgaaa cagaccgtcc tcaaaaataa cctgcaaaac ctgcttgaaa gcgcagaaaa
     2281 tatcctgctg cttcaaggcc ctgtcggcga tttttttctg cgccttgccg actggctgac
     2341 tgcaaacggc aaaaccgtac ataaattcaa ctttaatgca ggcgacgact atttttatcc
     2401 gcccactcaa gcgcataccg ttgtttttaa cgacaactac gatgcctttc ctgagttttt
     2461 gcaagaatac atcactcaac atcacatcca ggccgttgtc tgctttggcg acacacgccc
     2521 ttatcacgtc attgcaaaac gcattgcaaa cgaaaaccaa gccagtttct gggcgtttga
     2581 agaaggctat ttccgcccct actacatcac cttagaaaaa gacggcgtca acgcattttc
     2641 cccgttgcca cgccgtgccg acttttttct tgaacaattc cctaagcttg cccagcaaga
     2701 atataaagcg ccaacgccgg tacgcggcgg atttacgccc atggcaaaaa acgccatccg
     2761 ttactatatc gagttgttcc gcaatctacg caaatacccc gactacatcc accaccgcgc
     2821 acccaatgcc ggccattacc tcaaaccgtg gtcgctctcc atcctcaagc gtttgaacta
     2881 ctatattgaa gacatccaaa tcgccaaacg tgtggaagca ggcaaatacg gcaagttttt
     2941 tattgttccc ttgcaggtat tcaacgacag ccaagtccgt atccattgcg actttcccag
     3001 cgtccgcagc ttcctgctcc atgttttgag ttcatttgcc gagcacgcgc ctgccgatac
     3061 caacatcatc atcaagcatc atccgatgga ccgcggtttt atcgactact ggcgcgacat
     3121 taaacgcttt atcaaagaac accccgaact ccaaggccgt gtgatttatg tccatgatgt
     3181 ccccctgccc gttttcctgc gccacggtct cggcatggtt accatcaaca gcaccagcgg
     3241 cctgtccgga ctgattcaca atatgccagt taaggttctc ggccgtgcct attatgatat
     3301 tcccggtatt actgaccaaa ataccttggc agaattttgg aatcatccga caccgcctga
     3361 caaagagctg ttccatgcct accgaatgta ccacctcaac gtgacccaaa ttaacggcaa
     3421 cttctacagt caggtctttt ttcctaacaa aaaaacctcc gactcttcca ctccagcaac
     3481 ctgacttagc aaaaataatt caggccgtct gaaaacattt cagacggcct gaaacaatca
     3541 ataccttagc tactgccatg taaataaaac acaaaaacct gcatttatca ttaacaataa
     3601 attacaaaaa cagtataatg accgagctgc catgagcgca taccgactca acctgagccc
     3661 tttgtaacac acaaaatatg gatatatccc taggcaaaac aatataacaa gccaaacatc
     3721 ctaaagataa gccggcaagg caatacactc tataaaactg tgccgagcaa aatttttaca
     3781 aagccctcaa ccggtatcgc cgcccatatg ccgcagcatc cgtcttccac tttatatccg
     3841 cccgcaaacc atgaccgccg ctcctgatat cctctaccgg caagccgccg cccttttgga
     3901 acaatccaat accgcccaag ccctgcccct gttgcaacag gcggcagagc aaggttatgc
     3961 ggaagctgct ttcgtattgg gcaaccatct gctgcaaaac ggccaaccgg agcaggcact
     4021 ttcatggttg gaagccgccg cggcccaacg ccatcccaaa gcactcttct ccctgctgca
     4081 acaacgcgaa cacaacggca ccccgaccgg acagcttctc aacgactatg cctggctggg
     4141 tgagcagggg cactcagaag cccaattaat cctcatgcgt taccacgcgc aacgcaacga
     4201 tccacaatcg ctctactggg cggaacttgc tgccgcccga tatgccgcac ctgcgtatta
     4261 ccatctggca cgccatcatc aacgccaagg cgacgttgaa acagccatcg aacaatacga
     4321 aaaagcggca gcactcggcg taactgccgc ctgctggcaa cttggtcaaa tctacttcta
     4381 cggtacaggt gtcagcccca accacgcaca agccgaacac tatctcgaac cagccgcaca
     4441 agccggccac atcgccgcac aaacgctgct ggctgacctt cttgccgccc aacgcaaacc
     4501 tgaagccttg gaatggtatc gtcgtgccgc cgataaggaa caagcggaag cacagtctaa
     4561 gctggcccaa tacgccctga ccggcgaact ttccgaacgc gatccgttcc aagcggcacg
     4621 atatgccaaa gccgctgccg agaaaaacca tcctgaagcc ctgaaaatca tgggcgacct
     4681 ctaccgctac ggtctcggta tcaaagccga caaccatatc gcgcaagatt actaccaccg
     4741 tgccgccgcg ctgggttctg ccgccgcagc acaaaaactc atcagcgacg ccgcgctgta
     4801 ccatccgcaa caatacgaac aaatcaaaac tgccgccctg caacaacaac aaaccgaaac
     4861 catctaccgt ttggcggaag cacaagcctg cgccatcggc cgtcccgccg actacaatgc
     4921 cgcgcgaaaa aattacatgg aagctgccgg gttccaccat aaaaacgcag cggcagcctt
     4981 aggccgcatc taccattacg gcctcggtac ggcgcaagat cctcgggcgg ctgcacactg
     5041 gtacgccatt gctgccgaac aaaaccaccc ttccgcccaa taccacctcg cctgttttta
     5101 ctatcacggg caaggtgtcg gctgtcatgt tccgaccgcc tgctactggc tgcaggccgc
     5161 catcggcaac ggccacactt cggccgaatc attaatatcc ctattagaac aatggcgacg
     5221 cgaagcacac catgccatcg gacaaaaggc cgtctgaaaa gatttacact cgcatttttt
     5281 gacaatcttt aactattccc ctaatatttg ccagttattt ttcacggaca cgccattgtt
     5341 ttcatttctt tctgaaaaca ccttgtccgc gcatcaatac catgacactc ggcggataac
     5401 gccaagcgtt gaaacacact acatccggaa caaaaacgga tgctcggaaa aatatttcta
     5461 ggaggtgaaa caacatggaa tgggaattca acagttatta cacactgatt gccgccacgc
     5521 tcgtgttgct ggttggtaaa tttctggttc aaaaaatcaa attcttacga gacttcaata
     5581 ttcccgagcc ggtcgctggc ggtttggttg ccgcgattat cctgtttgcg ctgcacgagg
     5641 cgtacggcgt gagcttcaaa tttgagaaac cgctgcaaaa tgcgtttatg ctgattttct
     5701 tcacgtccat cggcttgagc gcggattttt cccgtttgaa ggcgggcggt ttgccgctgg
     5761 tggtttttac cgcgattgtg ggcggattta tcttggtgca aaactttgtc ggggtcggac
     5821 tggctacggc tttgggtttg gacccgctca tcggtctgat taccggttcg gtgtcgctga
     5881 cgggcggaca cggtacgtca ggtgcgtggg gacctaattt tgaaacgcaa tacggcttgg
     5941 tcggcgcaac cggtttgggt attgcatcgg ctactttcgg gctggtgttc ggcggcctga
     6001 tcggcgggcc ggttgcgcgc cgcctgatca acaaaatggg ccgcaaaccg gttgaaaaca
     6061 aaaaacagga tcaggacgac aacgcggacg acgtgttcga gcaggcaaaa cgcacccgcc
     6121 tgattacggc ggaatctgcc gttgaaacgc ttgccatgtt tgccgcgtgt ttggcgtttg
     6181 ccgagattat ggacggcttc gacaaagaat acctgttcga cctgcccaaa ttcgtgtggt
     6241 gtctgtttgg cggcgtggtc atccgcaaca tcctcactgc cgcattcaag gtcaatatgt
     6301 tcgaccgcgc catcgatgtg ttcggcaatg cttcgctttc gcttttcttg gcaatggcgt
     6361 tgctgaattt gaaactgtgg gagctgaccg gtttggcggg gcctgtaacc gtgattcttg
     6421 ccgtacaaac cgtggtgatg gttttgtacg cgacttttgt tacctatgtc tttatggggc
     6481 gcgactatga tgcggcagta ttggctgccg gccattgcgg tttcggcttg ggtgcaacgc
     6541 cgacggcggt ggcaaatatg cagtccgtca cgcatacttt cggcgcgtcg cataaggcgt
     6601 ttttgattgt gcctatggtc ggcgcgttct tcgtcgattt gattaatgcc gcgattctca
     6661 ccggttttgt gaatttcttt aaaggctgat tttccgcctt tccgacaaag cacctgcaag
     6721 gtttaccgcc tgcaggtgct tttgctatga tagccgctat cggtctgcac cgtttggaag
     6781 gaacatcatg tatcggaaac tcattgcgct gccgtttgcc ctgctgcttg ccgcttgcgg
     6841 cagggaagaa ccgcccaagg cattggaatg cgccaacccc gccgtgttgc aaggcatacg
     6901 cggcaatatt caggaaacgc tcacgcagga agcgcgttct ttcgcgcgcg aagacggcag
     6961 gcagtttgtc gatgccgaca aaattatcgc cgccgcctac ggtttggcgt tttctttgga
     7021 acacgcttcg gaaacgcagg aaggcgggcg cacgttctgt atcgccgatt tgaacattac
     7081 cgtgccgtct gaaacgcttg ccgatgccaa ggcaaacagc cccctgctgt acggggaaac
     7141 cgctttgtcg gatattgtgc ggcagaagac gggcggcaat gtcgagttta aagacggcgt
     7201 attgacggca gccgtccgct tcctgcccgt caaagacggt cagacggcat ttgtcgacaa
     7261 cacggtcggt atggcggcgc aaacgctgtc tgccgcgctg ctgccttacg gcgtgaagag
     7321 catcgtgatg atagacggca aggcggtgaa aaaagaagac gcggtcagga ttttgagcgg
     7381 aaaagcccgt gaagaagaac cgtccaaacc cacgcccgaa gacattttgg aacacaatgc
     7441 cgccggcggc gatgcgggcg taccccaagc cgcagaaggc gcgcccgaac cggaaatcct
     7501 gcatcctgac gacggcgagc gtgccgatac cgttaccgta tcacggggcg aagtggaaga
     7561 ggcgcgcgta caaaaccagc gtgcggaatc cgaaattacc aaactttggg gaggactcga
     7621 taccgacgtg caaaaagagt tggtcggcga acaacgcaag tgggcgcagg aaaaaatcag
     7681 caactgccga caagccgccg cgcaggcaga ccggcaggaa tacgccgaat acctcaagct
     7741 gcaatgcgac acgcggatga cgcgcgaacg gatacagtat cttcgcggct attccatcga
     7801 ttaggggcaa accgatgact accgtcccca aaagcaggat tcccgtcaaa ccgctgcccg
     7861 aaaaaaccac agacgaagcc aaagtcgaaa aatggcggca gctcggtgcg gaacacggtt
     7921 tgtcgggcga atgggcagtt gccgccagat tgggcgaaaa cggttttacc gaagaacaga
     7981 tggaaaatat cgccaacctg ttcggcagat aaagggaaaa ttgacggaaa tgccgtctga
     8041 aaccctgtta tcggtttcag acggcatttt gaccaatacg gtacgcaggc gcaaaacagc
     8101 cgtcttttcc tgcgtttcct atgctgatgt ttcaacacac aagacggcac ataaagcgtt
     8161 gccctatgtg ccgtcctgat tcggaaaggg ttacgcccct cctaa
//
LOCUS       DAWGNT010000083         8029 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.083, whole genome shotgun sequence.
ACCESSION   DAWGNT010000083 DAWGNT010000000
VERSION     DAWGNT010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8029)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8029)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8029
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.083"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            117..1058
                     /gene="miaA"
                     /locus_tag="WHR98_001261"
     CDS             117..1058
                     /gene="miaA"
                     /locus_tag="WHR98_001261"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEZ2307945.1"
                     /translation="MPTPKAFALLGPTAGGKTALALKIAETLPVEIISLDSALVYRDM
                     DIGTAKPSASERAFVPHHLIDIITPVQTYSAARFVEDCTRLIGEITARGKCPLIVGGT
                     MMYFRALTQGLNDLPEADACLRADLDEQKQMYGLDFLYRTLQKVDPETACRLKPNDSQ
                     RIGRALEVYYLTGKPMSTHLGSTTSHTLPFDLHTAALIPENRARLHENIALRFHMMLE
                     QGFIGEVENLRRRYPGLTADSPAIRCVGYRQAWKYLDGKTDFPAFVEKGIAATRQLAK
                     RQLTWLRKTPLDCVADPFSDGTSCTRLIEAAKRFFGA"
     gene            1062..1781
                     /locus_tag="WHR98_001262"
     CDS             1062..1781
                     /locus_tag="WHR98_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HEZ2307946.1"
                     /translation="MLTTPPLAPKTVAALHRLGIRTLEELRQNGSVKAFLLLKASGLT
                     LTKSTLWQLQSLLDDTLPQEMSQAHKARLLAELKNHPPVAAFPSQEEMEHFMREALRQ
                     AEQSAADGEIPVGAVIVSDGKIIASAHNTCIADCNVSRHAEINALAQAGREIQNYRLD
                     GCDIYITLEPCAMCASALIQARIRRVIYGAAEPKTGAAGSIVNLFADKRLNTHTAIRG
                     GILQEECRAVLSRFFQNKRKG"
     gene            1786..2274
                     /locus_tag="WHR98_001263"
     CDS             1786..2274
                     /locus_tag="WHR98_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF456 domain-containing protein"
                     /protein_id="HEZ2307947.1"
                     /translation="MTVLTVILALALIAVGTAGIVYPALPGLALMFAGTWLLAYSGGY
                     QIYGAGVLWTVGLISLAGILADYVAGILGVKYTGAGRLAVRGALVGSIVGIFFSLPGL
                     ILGPFIGAAAGELIDRRNMLQAGKAGLGTLLGLIVGTTFKIGCAVSILFILLVKYIAY
                     LF"
     gene            2340..3092
                     /gene="rlmB"
                     /locus_tag="WHR98_001264"
     CDS             2340..3092
                     /gene="rlmB"
                     /locus_tag="WHR98_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEZ2307948.1"
                     /translation="MANQRPIYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEK
                     AANENIRVYFADADRLNAISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILD
                     GITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLAR
                     TLRELKEYGIWIIGTDMGGDADLYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP
                     MFGTVESMNVSVSAGMVLSETRRQRVLKNEKA"
     gene            complement(3154..4545)
                     /locus_tag="WHR98_001265"
     CDS             complement(3154..4545)
                     /locus_tag="WHR98_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HEZ2307949.1"
                     /translation="MSGHMGKGADAPDLVYGLEDRPPFGNALLSAVTHLLAIFVPMIT
                     PALIVGGALELPVEMTAYLVSMAMVASGVGTYLQVNRFGPVGSGMLSIQSVNFSFVTV
                     MIALGAGMKEGGLTKDAMISTLLGVSFVGAFLVCFSAWLLPYLKKVITPTVSGVVVML
                     IGLSLVHVGITDFGGGFGAKADGTFGSMENLGLASLVLLIVLIFNCMKNPLLRMSGIA
                     VGLIAGYIVALFLGKVDFSALQNLPLVTLPVPFKYGFAFDWHAFIVAGAIFLLSVFEA
                     VGDLTATAMVSDQPIEGEEYTKRLRGGVLADGLVSVIATALGSLPLTTFAQNNGVIQM
                     TGVASRHVGKYIAVILVLLGLFPVVGRAFTTIPSPVLGGAMVLMFGLIAIAGVRILVS
                     HGIRRREAVIAATSVGLGLGVAFEPEVFKNLPVLFQNSISAGGITAVLLNLVLPEDKT
                     EAAVKFDTDHLEH"
     gene            4852..5727
                     /locus_tag="WHR98_001266"
     CDS             4852..5727
                     /locus_tag="WHR98_001266"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010360271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEZ2307950.1"
                     /translation="MLQGSLVALITPMNQDGSIHYEQLRDLIDWHIENGTDGIVAVGT
                     TGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLS
                     VVPYYNKPSQEGMYRHFKAVAEAAAIPMILYNVPGRTVVSMNNETILRLAEIPNIVGV
                     KEASGNIGSNIELINRAPEGFVVLSGDDHTALPFMLCGGHGVITVAANAAPKLFADMC
                     RAALQGDIALARELNNRLIPIYDTMFCEPSPAAPKWAVSALVRCEPHVRLPLVPLTEG
                     GQAKVRAALKASGQL"
     gene            5736..6932
                     /gene="bamC"
                     /locus_tag="WHR98_001267"
     CDS             5736..6932
                     /gene="bamC"
                     /locus_tag="WHR98_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HEZ2307951.1"
                     /translation="MPSEPFGRHNATNTLISITQDDTMTHIKPVIAALALIGLAACSG
                     SKTEQPKLDYQSRSHRLIKLEVPPDLNNPDQGNLYRLPAGSGAVRASDLEKRRTPAVQ
                     QPADAEVLKSVKGVRLEHDGSQRWLVVDGKSPAEIWPLLKAFWQENGFDIKSEEPAIG
                     QMETEWAENRAKIPQDSLRRLFDTVGLGGIYSTGERDKFIVRIEQGKNGVSDIFFAHK
                     AMKEVYGGKDKDTTMWQPSASDPNLEAAFLTRFMQYLGVDGQQAENASAKKPTLPAAN
                     EMARIEGKSLIVFGDYGRNWRRTALALDRIGLTVVGQNTERHAFLVQKAPNESNAVTE
                     QKPGLFKRLLGKGKAEKPAEQPELIVYAEPVANGSRIVLLNKDGSAYAGKDASALLGK
                     LHSELR"
     gene            complement(6989..7921)
                     /gene="pip"
                     /locus_tag="WHR98_001268"
     CDS             complement(6989..7921)
                     /gene="pip"
                     /locus_tag="WHR98_001268"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HEZ2307952.1"
                     /translation="MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAG
                     ASPECRGFFNPDVFRIVIIDQRGCGRSRPYACAEDNTTWDLVADIEKVREMLGIGKWL
                     VFGGSWGSTLSLAYAQTHPERVKGLVLRGIFLCRPSETVWLNEAGGVSRIYPEQWQKF
                     VAPIAENRRNRLIEAYHGLLFHQDEEVCLSAAKAWADWESYLIRFEPEEVDEDAYASL
                     AIARLENHYFVNGGWLQGDRAILNNIGKIRHIPTIIVQGRYDLCTPMQSAWALSKAFP
                     EAELRVVQAGHRAFDPPLADALVQAVEDILPHLL"
BASE COUNT         2058 a         2638 c         1871 g         1462 t
ORIGIN      
        1 ctatataaag gcatacggta aacacgcccc cttgccgtcg gcgtgcttcc gcaaaccaaa
       61 atataacgtc ggcacgcttt ccgctataat ccgcattttc gcaaccctga aacatcatgc
      121 cgaccccgaa agcctttgcc ctgctcgggc cgaccgccgg aggcaaaacc gcgctcgccc
      181 tcaaaattgc cgaaaccctg cctgtcgaaa tcatcagcct cgattccgcg ctggtttacc
      241 gcgatatgga catcggcacg gcgaaaccgt ccgcctccga acgcgccttt gtcccgcacc
      301 accttatcga catcattacg cctgttcaga catacagtgc cgcccgtttt gtcgaagact
      361 gcacgcgtct gatcggcgaa atcacggcgc gtgggaaatg tccgctgatt gtcggcggca
      421 caatgatgta tttccgcgcc ctgacccaag gtttgaacga tttgcccgaa gccgatgcct
      481 gcctgcgtgc cgacttggac gaacaaaaac aaatgtacgg cttggatttt ctctaccgca
      541 ccctgcaaaa agtcgaccct gaaaccgcat gccgtctgaa accgaacgac agccagcgta
      601 tcggacgcgc tttggaagtt tattatttaa ccggcaaacc gatgagtacg catctcggca
      661 gcacaacctc ccatacgctc ccttttgatt tgcataccgc cgccctgatt cccgaaaacc
      721 gcgcccgcct gcatgaaaac atcgccctgc gtttccacat gatgctcgaa cagggcttta
      781 tcggcgaagt agaaaacctg cgccgccgct atcccggcct gaccgccgac tcccccgcca
      841 tccgctgcgt cggctaccgt caggcatgga aatatctgga tggaaaaacc gatttcccgg
      901 catttgtcga gaaaggcatt gccgccaccc gccaacttgc caaacgccaa ctgacttggt
      961 tgcgcaaaac acctttagac tgcgttgccg acccgttttc agacggcact tcatgcacac
     1021 gcctgattga ggcggcaaaa cggtttttcg gcgcataaac catgctgacc acaccgccgc
     1081 tcgcccccaa aaccgtcgcc gccctgcaca ggctcggtat ccgtacgctc gaagaactgc
     1141 ggcaaaacgg ttcggtcaaa gcctttctgc tgctcaaagc atcgggtttg accctcacga
     1201 aaagcacact gtggcagctt cagtcgctgc tggacgacac gctgccgcaa gaaatgtccc
     1261 aagcgcataa agcccgcctt cttgccgaat tgaaaaacca tccgcccgtc gccgccttcc
     1321 catcgcagga agaaatggaa cacttcatgc gcgaagcact gcgccaagca gaacaatccg
     1381 ccgccgacgg cgaaataccc gtcggggcag tcattgtttc agacggcaaa atcatcgcat
     1441 cggcacacaa cacctgcatt gccgactgca atgtcagccg acacgccgaa atcaacgcct
     1501 tggcacaagc aggcagagaa atacaaaact accgccttga cggatgcgac atatatatca
     1561 ccctcgaacc ctgcgccatg tgcgcgtccg cactgataca ggcacgaatc aggcgtgtga
     1621 tatatggtgc ggcagaaccc aaaaccggcg cggcaggcag cattgtcaac ctgtttgccg
     1681 acaaacgcct caatacgcac accgccatac ggggcggaat cctgcaagaa gaatgccgcg
     1741 ccgtattaag ccgttttttt cagaacaaaa gaaaaggttg aacctatgac cgtactgacc
     1801 gtcatcctcg ccctcgccct gatagccgtc ggcacggcgg gcatcgttta ccccgccctg
     1861 cccggattgg cattgatgtt tgccggaaca tggctgcttg cctactccgg cggctaccaa
     1921 atctacggcg caggtgtttt gtggacggtc ggactcatca gccttgccgg catactggcg
     1981 gactatgtgg caggcatatt gggggtaaaa tataccggag cgggcaggct cgccgttcgc
     2041 ggcgcattgg tcggcagcat cgtcggcata tttttctccc ttcccggact aatactcggc
     2101 ccctttatcg gcgcggcggc aggcgaactc atcgacagac gcaatatgct tcaggcaggt
     2161 aaagcgggct tgggtacgct gttggggctt atcgtcggta cgacattcaa aatcggctgc
     2221 gccgtatcca tcttgtttat cctgttggtg aaatacatcg cctacctgtt ttaacccctt
     2281 cagacggcat accggcaaat tgctataatg ccgtctgaac cctttttaca aagcaccata
     2341 tggcaaacca aagacctatc tacggcttcc atgccgtcaa cgcccgattg tggcaaaacc
     2401 ccaaatccat cgtcgaactc tatgtccaag aaggcaaaaa cgatgtacgc acgcgcgaag
     2461 tgttggaaaa ggcggcaaac gaaaacatcc gcgtatattt tgccgatgcc gaccgcctca
     2521 acgccatcag caaaggtgcg cgccatcagg gcgtggtcgg atttatcgat gcctccaaaa
     2581 accacgtcca cctcgaagac gtattggaaa acttaagcga accgccgctg ctgctgatac
     2641 tcgacggcat caccgacccg cacaacctcg gcgcatgcct gcgtaccgcc gacgcaatgg
     2701 gcgtacatgc cgtcatcgca ccgaaagaca aaagcgcggg gctgaacgcc accgtcagca
     2761 aagtcgcctg cggcgcggcg gaaactgtcc cctacatcac tgtaaccaac ctcgcccgca
     2821 ccctgcgcga gctgaaagaa tacggcatct ggattatcgg caccgacatg ggcggcgacg
     2881 ccgaccttta ccattgcaat ctgcccgaca gcgcggcgtg ggtaatgggc aacgaaggcg
     2941 acggtatgcg ccgcctcacg cgtgaacact gcgacatgct ggtgtccata cccatgttcg
     3001 gcacggtcga aagcatgaac gtctccgtgt ccgcaggaat ggtattaagt gaaacccgcc
     3061 ggcaacgcgt attgaaaaac gaaaaagcgt aagcctcaaa aacaatgccg tctgaaacag
     3121 ggattctgtt tcagacggca ttcattttca aaatcagtgt tccaagtggt cggtatcaaa
     3181 cttgaccgcc gcctcggttt tatcttcggg caagaccaaa ttcaacaaga ctgccgtaat
     3241 gccgccggcg gaaatagagt tttggaacaa gacgggcaga ttcttaaaca cttccggttc
     3301 aaacgcgaca cccaagccca aaccgaccga cgttgccgca attaccgcct cgcgcctgcg
     3361 gatgccgtgg ctgaccaaaa tccgcacgcc cgcaatcgca atcaagccga acatcaaaac
     3421 catcgcgccg cccaacaccg gactcggaat cgtcgtaaac gcgcgtccga caacggggaa
     3481 cagacccaac agcaccaaaa tcacggcaat atatttgccc acatggcgcg aagccacgcc
     3541 ggtcatctga atcacgccgt tgttttgcgc aaacgtcgtc agcggcagcg aacccaaagc
     3601 cgtcgcaatc accgacacca agccgtcagc caacacgccg ccgcgcaggc gtttggtgta
     3661 ttcctcgcct tcaatcggct ggtcggacac cattgccgtc gcggttaaat cgccgaccgc
     3721 ctcaaacacg ctcaacaaga aaatcgcgcc cgccacaata aacgcgtgcc agtcaaaagc
     3781 aaaaccatat ttaaacggta cgggcagcgt aaccagcggc aggttttgca gcgcggaaaa
     3841 atccaccttg cccaaaaaca gcgcgacgat atagccggca atcagaccga ccgcgatgcc
     3901 gctcatccgc aacagcgggt ttttcatgca gttgaatatc aacacaatca gcaacaccag
     3961 cgaagccagc cccaagtttt ccatcgagcc gaacgtgccg tccgccttcg cgccgaagcc
     4021 gccgccgaaa tcggtaatac cgacgtgcac caaactcaag ccaatcagca tcacgaccac
     4081 gccactgacc gtcggcgtaa tcactttttt caaatacggc agcagccacg ccgagaaaca
     4141 caccaaaaac gcgccgacaa acgatacgcc caagagcgtc gaaatcatcg catccttagt
     4201 caaaccgccc tctttcatcc ccgcgcccag cgcaatcatg acggtaacga acgagaaatt
     4261 caccgactgg atggacagca tccccgaacc gaccggcccg aagcggttga cctgcaaata
     4321 agtgccgaca cccgacgcaa ccatcgccat cgacacgaga tacgccgtca tctccaccgg
     4381 cagttccagc gcgccgccca caatcagcgc gggcgtaatc atcggcacga aaatcgccaa
     4441 aagatgggta accgcgctca acagcgcatt accgaacggc ggcctatcct ccaaaccgta
     4501 caccaaatca ggcgcatccg ccccttttcc catatgaccg ctcataatgt ttccttgctt
     4561 caaatgttga aaaaaccaaa gcgcgggttg tagcgaatcc gccataccgc ttcaatttcg
     4621 atttcggacg gcatacgcgc ccgtccggca aacagattcc gaaccgtcgc cgccggaata
     4681 tcgtttacaa aacgcaataa cctgatttca aacacaaaaa tacaaacccg acgcatccgc
     4741 cgtcaagccg ccccgctcat cccggacccg ccggatttca cacctgcggt aaagtaggct
     4801 acaatcggaa gcattaccgc cccctacacc acaactgata aaaggttctg tatgttacaa
     4861 ggtagcctgg ttgccctgat taccccgatg aatcaagacg gcagcatcca ttacgaacaa
     4921 ctccgcgact taatcgactg gcacattgaa aacggcacgg acggcatcgt tgccgtcggc
     4981 acgacaggcg aatccgccac cctctccgtc gaagaacaca ccgccgtcat cgaagccgtc
     5041 gtcaaacacg ttgccaaacg cgtccccgtc atcgccggca caggggcaaa caacaccgtc
     5101 gaagccatcg ccctttccca agccgccgaa aaagccgggg cggactacac cctctccgtc
     5161 gtcccctatt acaacaaacc ttcgcaagaa ggcatgtacc gccatttcaa agccgttgcc
     5221 gaagccgccg cgattccgat gatactctac aacgttcccg gcagaaccgt cgtcagcatg
     5281 aacaacgaaa ccatcctgcg ccttgccgaa atccccaaca tcgtcggcgt gaaagaagcc
     5341 agcggcaaca tcggcagcaa catcgaactc atcaaccgcg cgcccgaagg cttcgtcgtc
     5401 ctgtccggcg acgaccacac cgccctaccg ttcatgctct gcggcggaca cggcgttatt
     5461 accgtagccg ccaacgccgc acccaagctc tttgccgata tgtgccgcgc cgcgcttcaa
     5521 ggcgatatcg ccctcgcacg cgagctcaac aaccggctga ttccgattta cgacaccatg
     5581 ttctgcgaac ccagccccgc cgcaccgaaa tgggcggtat ccgccctggt cagatgcgaa
     5641 ccgcacgtcc gcctgccgct cgttccgctg acggaaggcg gacaggcaaa agtccgcgcc
     5701 gccctgaaag cctcaggaca actttaaata tagccatgcc gtccgaaccg ttcggacggc
     5761 ataacgcaac aaacacttta atatccatca cacaggatga cacgatgacc catatcaaac
     5821 ccgtcattgc cgcgctcgca ctcatcgggc ttgccgcctg ctccggcagc aaaaccgaac
     5881 agcccaagct cgactaccaa agccggtcgc accgcctgat caaacttgaa gtcccacctg
     5941 atttgaacaa ccccgaccaa ggcaacctct accgcctgcc tgccggttcg ggcgccgtcc
     6001 gcgccagcga tttggaaaaa cgccgcacac ccgccgtcca acagcctgcc gatgccgaag
     6061 tattgaaaag cgtcaaaggt gtccgcctcg agcacgacgg cagccaacgc tggcttgtcg
     6121 ttgacggcaa atcccccgcc gaaatctggc cgctcctgaa agccttctgg caggaaaacg
     6181 gcttcgacat caaatccgaa gaacccgcca tcggacaaat ggaaaccgag tgggcggaaa
     6241 accgtgccaa aatcccccaa gacagcttgc gccgcctatt cgacacagtc ggtttgggcg
     6301 gcatctactc caccggcgag cgcgacaaat tcatcgtccg tatcgaacag ggcaaaaacg
     6361 gcgtttccga catcttcttc gcccacaaag ccatgaaaga agtgtacggc ggcaaagaca
     6421 aagacacgac catgtggcag ccttccgctt ccgaccccaa ccttgaggcc gctttcctga
     6481 cgcgctttat gcaatatttg ggcgttgacg gacagcaggc ggaaaacgca tcggcaaaaa
     6541 aacctaccct tcccgccgcc aacgaaatgg cgcgtatcga aggcaaaagc ctgattgtct
     6601 ttggcgacta cggcagaaac tggcggcgca ccgcgctcgc cctcgaccgc atcgggctga
     6661 ccgtcgtcgg tcaaaacacc gaacgccacg ctttcctggt tcaaaaagcc ccgaacgaaa
     6721 gcaatgcagt taccgaacaa aaacccggcc tgttcaaacg cctgctgggc aaaggcaaag
     6781 cggagaaacc tgccgaacag ccggaactga ttgtctatgc cgagcctgtc gccaacggct
     6841 cgcgcatcgt cctgctcaac aaagacggca gcgcatatgc cggcaaagac gcatccgcat
     6901 tattgggcaa actccattcc gaactgcgtt aaaccgttca aaacaaaagc agcttccaaa
     6961 cagaagctgc ttttttatgc ggaacttttt acaacaaatg gggcaaaata tcctcaaccg
     7021 cctgaaccag cgcatccgcc aaaggcggat cgaacgcacg atgccctgcc tgaaccaccc
     7081 tcaattccgc ttccggaaag gctttcgaca gcgcccacgc actctgcatc ggcgtacaca
     7141 aatcataccg cccctgcacg ataatggtcg ggatatgccg tattttgccg atattgttca
     7201 aaatcgccct atcgccctgc agccagccgc cgttgacaaa ataatggttt tccaaacgcg
     7261 cgattgccag cgaggcataa gcatcttcat ccacttcctc cggctcgaaa cggatcagat
     7321 agctttccca atccgcccaa gcctttgcgg cagacaggca cacttcttca tcttgatgaa
     7381 acagcaatcc gtgatacgcc tcaatcagcc ggttccgccg attttcagca atcggcgcga
     7441 caaatttttg ccattgttcc ggataaatcc ggctcacacc gcccgcctcg ttcagccaca
     7501 ccgtttcaga cggtctgcac aaaaatatcc cgcgcaacac caatcccttt acccgttccg
     7561 gatgggtttg ggcataagcc agcgacaaag tactgcccca cgaaccgccg aacaccagcc
     7621 atttcccgat acccagcatt tcacggactt tttcaatatc cgccaccaaa tcccaagtcg
     7681 tattgtcttc cgcacaagca tacgggcgcg aacgtccgca accgcgctgg tcgatgatga
     7741 cgatgcggaa cacatcggga ttgaaaaaac cccgacattc aggcgaagcc cccgcgcccg
     7801 gcccgccatg taaaaaaatg accggcacac cgtcgggatt gcccgactct tcccaataaa
     7861 tttgatgaat ttcagacacc tgcaagtatc cgctatgaaa aggctgtttt atctcataca
     7921 tcatcttctc ccatattgct tctgacaatc cgaacattcc cacacgcaac atcacgcacg
     7981 agacacaagc cgccccgaaa ggcaaatgcc gaaaaatcgc gatatagtg
//
LOCUS       DAWGNT010000084         8027 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.084, whole genome shotgun sequence.
ACCESSION   DAWGNT010000084 DAWGNT010000000
VERSION     DAWGNT010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 8027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8027
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.084"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            109..792
                     /locus_tag="WHR98_001269"
     CDS             109..792
                     /locus_tag="WHR98_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1 family protein"
                     /protein_id="HEZ2307953.1"
                     /translation="MQHDVYDYTAHTVSKNTVLQKTYRLLGFSFIPAAAGAALAANAG
                     FNFYAAFGSRWIGFAVVLAFFYGMIHFIEKNRYSNTGVTLLMVFTFGMGVLIGPVLQY
                     ALHIADGAKIVGIAAAMTAAVFLTMSALARRTRLDMNALGRFLTVGAVILMVAVVANL
                     FLGIPALALTISAGFVLFSSLMIMWQVRTVIDGGEDSHISAALTLFISLYNIFSSLLN
                     ILLSLNGED"
     gene            916..1428
                     /gene="coaD"
                     /locus_tag="WHR98_001270"
     CDS             916..1428
                     /gene="coaD"
                     /locus_tag="WHR98_001270"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEZ2307954.1"
                     /translation="MLPNTPRRAVYAGSFDPPTLGHLWMIRQAQSMFDELIVAIGINP
                     DKRSTYTVAERQDMLCDITKMFPNVRTDVFENRFLVHYAREVDAGFIVRGIRSASDYE
                     YERSMRHINSDLAPEISTVFLMPPREIAEVSSTMVKGLVGPEGWTETVKRYVPPAVYQ
                     KMIAEHHNNA"
     gene            1464..2117
                     /locus_tag="WHR98_001271"
     CDS             1464..2117
                     /locus_tag="WHR98_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HEZ2307955.1"
                     /translation="MWEILFRHQDFVAINKPQGISVHRSDGEVSLTATLAAQLGVEKV
                     WLLHRLDKQTGGILLFALNSQSAAVLAAQFAERKMKKTYLALSDRKPSKKQGWIKGGM
                     EKSRRGMWKLTRNMENIAVTQFFSIRISEKMRLFILEPHTGKTHQLRVAMKSLGSPIL
                     GDRLYGGTESETTFLYAWKIQFTYQQQEIEITAPLKNAWQAENISHALEEFYMAKAV"
     gene            2460..4000
                     /locus_tag="WHR98_001272"
     rRNA            2460..4000
                     /locus_tag="WHR98_001272"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            4101..4177
                     /locus_tag="WHR98_001273"
     tRNA            4101..4177
                     /locus_tag="WHR98_001273"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4135..4137,aa:Ile,seq:gat)
     gene            4183..4258
                     /locus_tag="WHR98_001274"
     tRNA            4183..4258
                     /locus_tag="WHR98_001274"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4216..4218,aa:Ala,seq:tgc)
     gene            4665..7556
                     /locus_tag="WHR98_001275"
     rRNA            4665..7556
                     /locus_tag="WHR98_001275"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            7653..7766
                     /gene="rrf"
                     /locus_tag="WHR98_001276"
     rRNA            7653..7766
                     /gene="rrf"
                     /locus_tag="WHR98_001276"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         2199 a         1805 c         2204 g         1819 t
ORIGIN      
        1 tttaaaatac gctggacaac tttatcttca cgcaaccgga caaattttga cattgggcaa
       61 tgttaaaatc ccccattatt cccaaccgcg ctttcaggag cagatgatat gcaacacgac
      121 gtttacgact acaccgcgca tacggtttct aaaaacaccg tcctgcagaa aacctaccgc
      181 ctgctcggat tttcattcat tccggctgcc gcaggcgcgg cacttgccgc caatgccggt
      241 ttcaattttt acgccgcctt cggttcgcgc tggatagggt ttgccgtcgt gttggcgttt
      301 ttctacggta tgatccactt catcgagaaa aaccgttaca gcaataccgg cgttaccctg
      361 ctgatggtat tcacattcgg tatgggcgta ttgatcggcc ccgtgctgca atacgcgctc
      421 catattgccg acggtgcgaa aatcgtcggc attgccgccg cgatgaccgc cgccgtcttt
      481 ttaacgatgt ccgctttggc gcgccgaacc cggctcgata tgaacgcgct cggacgcttc
      541 ctgaccgtag gtgcggtcat tctgatggtc gccgtggttg ccaatctgtt tttgggtatt
      601 cccgcactcg ccctgaccat ttccgccggt tttgtcttgt tcagttcctt aatgattatg
      661 tggcaggtac gcaccgtcat cgacggcggc gaagacagcc acatcagcgc ggcactgaca
      721 ctgtttatct cgctttacaa catcttcagc agcctgctga acatcctgtt gtctttaaac
      781 ggcgaggatt gatgccggta aaacgccgtc cgactatgcc gtctgaaaat gcttcagacg
      841 gcattttact ttgggcatac aatacggatg cacacgcacc aacacacagc cgactatgaa
      901 gccgggagga atcaaatgtt accgaataca ccgcgccgcg ccgtttatgc cggcagtttc
      961 gatccgccca cattggggca tctgtggatg atacggcagg cgcaatctat gtttgacgaa
     1021 ctcatcgtcg ccatcggcat taaccccgac aaacgcagca cctataccgt cgctgaaagg
     1081 caggatatgt tgtgcgatat tactaaaatg tttcccaacg tcagaaccga tgtatttgaa
     1141 aaccgatttc tggtgcatta cgcccgtgag gtagatgcag gattcatcgt gcgcggcatc
     1201 cgttctgctt cggattacga atacgaacgt tccatgcgcc atatcaacag cgacctcgcc
     1261 cccgaaatat ccaccgtatt cctcatgccg ccgcgcgaaa tcgccgaagt gtcgtccact
     1321 atggtcaaag gtttggtcgg gccggaaggc tggacggaaa ccgtcaaaag atatgtgccg
     1381 ccggccgtgt accaaaaaat gattgcagaa catcacaaca atgcctgaca gaaagcttct
     1441 gtcaaatata ttcaggttca aatatgtggg aaatcttatt cagacaccaa gattttgtcg
     1501 ccatcaataa acctcaaggc atatccgtcc accgttccga cggcgaagtc agtctgacgg
     1561 caacacttgc ggcacagttg ggcgtagaaa aggtatggtt gctgcacagg ttggacaagc
     1621 agaccggagg catattgctg tttgccctta attcccaaag tgccgctgtt cttgccgcac
     1681 aatttgccga aaggaaaatg aagaaaacct atttagcttt gtccgaccgc aaaccgtcca
     1741 aaaaacaagg atggataaaa ggcggcatgg aaaaatccag acgcggaatg tggaagctga
     1801 cgcgcaatat ggaaaatatt gccgttaccc agtttttcag tatacgtatc agtgaaaaaa
     1861 tgcggctgtt cattcttgag cctcataccg gtaagacaca tcagctgaga gtggcaatga
     1921 aaagtctggg cagtcctatt ttgggggacc gcttatacgg agggacagaa tccgaaacta
     1981 cgttcctgta tgcatggaaa atacaattta cctatcaaca acaagaaatc gaaattactg
     2041 cacctttgaa aaatgcatgg caggctgaaa atatctctca tgcgctggaa gaattttata
     2101 tggcaaaagc agtttaataa atataaatta atttataaac aatatgataa atatttttat
     2161 aaaaattttt taagaaaacg gttgaccgca aatctcttca agcgtatagt tcggttcttc
     2221 gctgctgcag aagtggcgga cgaactgaaa agtatagcac agaatgttgg ggatatcgag
     2281 agatatcttg acaggcggaa gagatacttt ataattcgca acgctcttta acaaaacaga
     2341 ttaccgataa gtgtgagtgc cttgagcctc acactgtttg aaagacagac aagataatgt
     2401 tttgaacatt gtcctgtcgg tttctttgaa gcagaccaga agttaaaaag ttagagattg
     2461 aacataagag tttgatcctg gctcagattg aacgctggcg gcatgcttta cacatgcaag
     2521 tcggacggca gcacagagaa gcttgcttct cgggtggcga gtggcgaacg ggtgagtaac
     2581 atatcggaac gtaccgagta gtgggggata actgatcgaa agatcagcta ataccgcata
     2641 cgtcttgaga gagaaagcag gggacctttg ggccttgcgc tattcgagcg gccgatatct
     2701 gattagctag ttggtggggt aaaggcctac caaggcgacg atcagtagcg ggtctgagag
     2761 gatgatccgc cacactggga ctgagacacg gcccagactc ctacgggagg cagcagtggg
     2821 gaattttgga caatgggcgc aagcctgatc cagccatgcc gcgtgtctga agaaggcctt
     2881 cgggttgtaa aggacttttg tcagggaaga aaaggctgtt gctaatacca gcggccgatg
     2941 acggtacctg aagaataagc accggctaac tacgtgccag cagccgcggt aatacgtagg
     3001 gtgcgagcgt taatcggaat tactgggcgt aaagcgggcg cagacggtta cttaagcagg
     3061 atgtgaaatc cccgggctca acccgggaac tgcgttctga actgggtgac tcgagtgtgt
     3121 cagagggagg tagaattcca cgtgtagcag tgaaatgcgt agagatgtgg aggaataccg
     3181 atggcgaagg cagcctcctg ggataacact gacgttcatg cccgaaagcg tgggtagcaa
     3241 acaggattag ataccctggt agtccacgcc ctaaacgatg tcaattagct gttgggcaac
     3301 ttgattgctt agtagcgtag ctaacgcgtg aaattgaccg cctggggagt acggtcgcaa
     3361 gattaaaact caaaggaatt gacggggacc cgcacaagcg gtggatgatg tggattaatt
     3421 cgatgcaacg cgaagaacct tacctggtct tgacatgtac ggaatcctcc agagacggag
     3481 gagtgccttc gggagccgta acacaggtgc tgcatggctg tcgtcagctc gtgtcgtgag
     3541 atgttgggtt aagtcccgca acgagcgcaa cccttgtcat tagttgccat cattcagttg
     3601 ggcactctaa tgagactgcc ggtgacaagc cggaggaagg tggggatgac gtcaagtcct
     3661 catggccctt atgaccaggg cttcacacgt catacaatgg tcggtacaga gggtagccaa
     3721 gccgcgaggc ggagccaatc tcacaaaacc gatcgtagtc cggattgcac tctgcaactc
     3781 gagtgcatga agtcggaatc gctagtaatc gcaggtcagc atactgcggt gaatacgttc
     3841 ccgggtcttg tacacaccgc ccgtcacacc atgggagtgg gggataccag aagtaggtag
     3901 ggtaaccgca aggagtccgc ttaccacggt atgcttcatg actggggtga agtcgtaaca
     3961 aggtagccgt aggggaacct gcggctggat cacctccttt ctagagaaag aagaggcttt
     4021 aggcattcac acttatcggt aaactgaaaa gatgcggaag aagcttgagt gaaggcaaga
     4081 ttcgcttaag aagagaatcc gggtttgtag ctcagctggt tagagcacac gcttgataag
     4141 cgtggggtcg gaggttcaag tcctcccaga cccaccaaga acgggggcat agctcagttg
     4201 gtagagcacc tgctttgcaa gcagggggtc atcggttcga tcccgtttgc ctccaccaat
     4261 actgtacaaa tcaaaacgga agaatggaac agaatccatt cagggcgacg tcacacttga
     4321 ccaagaacaa aatgctgata taataatcag ctcgttttga tttgcacagt agatagcaat
     4381 atcgaacgca tcgatcttta acaaattgga aagccgaaat caacaaacaa agacaaagcg
     4441 tttgttttga ttttttattc tttgcaaagg ataaaaaatc gctcacaaga gaaaagaaaa
     4501 caaacacagt atttgggtga tgattgtatc gacttaatcc tgaaacacaa aaggcaggat
     4561 taagacacaa caaagcagta agctttatca aagtaggaaa ttcaagtctg atgttctagt
     4621 caacggaatg ttaggcaaag tcaaagaagt tcttgaaatg atagagtcaa gtgaataagt
     4681 gcatcaggtg gatgccttgg cgatgatagg cgacgaagga cgtgtaagcc tgcgaaaagc
     4741 gcgggggagc tggcaataaa gcaatgattc cgcgatgtcc gaatggggaa acccactgca
     4801 ttctgtgcag tatcctaagt tgaatacata gacttagaga agcgaacccg gagaactgaa
     4861 ccatctaagt acccggagga aaagaaatca accgagattc cgcaagtagt ggcgagcgaa
     4921 cgcggaggag cctgtacgta ataactgtcg agatagaaga acaagctggg aagcttgacc
     4981 atagtgggtg acagtcccgt attcgaaatc tcaacagcgg tactaagcgt acgaaaagta
     5041 gggcgggaca cgtgaaatcc tgtctgaata tggggggacc atcctccaag gctaaatact
     5101 catcatcgac cgatagtgaa ccagtaccgt gagggaaagg cgaaaagaac cccgggaggg
     5161 gagtgaaaca gaacctgaaa cctgatgcat acaaacagtg ggagcgccct agaggtgtga
     5221 ctgcgtacct tttgtataat gggtcaacga cttacattca gtagcgagct taaccgaata
     5281 ggggaggcgt agggaaaccg agtcttaata gggcgatgag ttgctgggtg tagacccgaa
     5341 accgagtgat ctatccatgg ccaggttgaa ggtgccgtaa caggtactgg aggaccgaac
     5401 ccacgcatgt tgcaaaatgc ggggatgagc tgtggatagg ggtgaaaggc taaacaaact
     5461 cggagatagc tggttctccc cgaaaactat ttaggtagtg cctcgagcaa gacactgatg
     5521 ggggtaaagc actgttatgg ctagggggtt attgcaactt accaacccat ggcaaactaa
     5581 gaataccatc aagtggttcc tcgggagaca gacagcgggt gctaacgtcc gttgtcaaga
     5641 gggaaacaac ccagaccgcc agctaaggtc cccaatgata gattaagtgg taaacgaagt
     5701 gggaaggccc agacagccag gatgttggct tagaagcagc catcatttaa agaaagcgta
     5761 atagctcact ggtcgagtcg tcctgcgcgg aagatgtaac ggggctcaaa tctataaccg
     5821 aagctgcgga tgccagttta ctggcatggt aggggagcgt tctgtaggcc gatgaaggtg
     5881 cattgtaaag tgtgctggag gtatcagaag tgcgaatgtt gacatgagta gcgataaagc
     5941 gggtgaaaag cccgctcgcc gaaagcccaa ggtttcctgc gcaacgttca tcggcgtagg
     6001 gtgagtcggc ccctaaggcg aggcagaaat gcgtagtcga tgggaaacag gttaatattc
     6061 ctgtacttga ttcaaatgcg atgtggggac ggagaaggtt aggttggcaa gctgttggaa
     6121 tagcttgttt aagccggtag gtggaagact taggcaaatc cgggtcttct taacaccgag
     6181 aagtgacgac gagtgtctac ggacacgaag caaccgatac cacgcttcca ggaaaagcca
     6241 ctaagcttca gtttgaatcg aaccgtaccg caaaccgaca caggtgggca ggatgagaat
     6301 tctaaggcgc ttgagagaac tcaggagaag gaactcggca aattgatacc gtaacttcgg
     6361 gagaaggtat gccctctaag gttaaggact tgctccgtaa gccctggagg gtcgcagaga
     6421 ataggtggct gcgactgttt attaaaaaca cagcactctg ctaacacgaa agtggacgta
     6481 tagggtgtga cgcctgcccg gtgctggaag gttaattgaa gatgtgcaag catcggatcg
     6541 aagccccagt aaacggcggc cgtaactata acggtcctaa ggtagcgaaa ttccttgtcg
     6601 ggtaagttcc gacccgcacg aatggcgtaa cgatggccac actgtctcct cctgagactc
     6661 agcgaagttg aagtggttgt gaagatgcaa tctacccgct gctagacgga aagaccccgt
     6721 gaacctttac tgtagctttg cattggactt tgaagtcact tgtgtaggat aggtgggagg
     6781 cttagaagca gagacgccag tctctgtgga gccgtccttg aaataccacc ctggtgtctt
     6841 tgaggttcta acccagaccc gtcatccggg tcggggaccg tgcatggtag gcagtttgac
     6901 tggggcggtc tcctcccaaa gcgtaacgga ggagttcgaa ggttacctaa gtccggtcgg
     6961 aaatcggact gatagtgcaa tggcaaaagg tagcttaact gcgagaccga caagtcgagc
     7021 aggtgcgaaa gcaggacata gtgatccggt ggttctgtat ggaagggcca tcgctcaacg
     7081 gataaaaggt actccgggga taacaggctg attccgccca agagttcata tcgacggcgg
     7141 agtttggcac ctcgatgtcg gctcatcaca tcctggggct gtagtcggtc ccaagggtat
     7201 ggctgttcgc catttaaagt ggtacgtgag ctgggtttaa aacgtcgtga gacagtttgg
     7261 tccctatctg cagtgggcgt tggaagtttg acgggggctg ctcctagtac gagaggaccg
     7321 gagtggacga acctctggtg taccggttgt aacgccagtt gcatagccgg gtagctaagt
     7381 tcggaagaga taagcgctga aagcatctaa gcgcgaaact cgcctgaaga tgagacttcc
     7441 cttgcggttt aaccgcacta aagagtcgtt cgagaccagg acgttgatag gtggggtgtg
     7501 gaagcgcggt aacgcgtgaa gctaacccat actaattgct cgtgaggctt gactctatca
     7561 tttgaagaac ttcaagagat aaaagcttac tgactgattc agtcattacc gaatatattg
     7621 attaaggctt taccgatttg taacagttta agtttggcgg ccatagcgag ttggtcccac
     7681 gccttcccat cccgaacagg accgtgaaac gactcagcgc cgatgatagt gtggttcttc
     7741 catgcgaaag taggtcactg ccaaacaccc tttcagaaaa cccccgatta ttcgggggtt
     7801 tttgctttac ccggaaaaaa tgtcggggat ggcgggacgg catccgtacg gcgtccggtc
     7861 gggtttgcgg aggaacggct tgaaactttg ggatattcat tttagaatga ctcgttttat
     7921 cgtcgcaaga tgcggtttat tgtttgcaac ccttaaagga aaaaccatga agaaaatgtt
     7981 cgtgctgttc tgtatgctgt tctcctgcgc cttctccctt gcggcgg
//
LOCUS       DAWGNT010000085         7956 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.085, whole genome shotgun sequence.
ACCESSION   DAWGNT010000085 DAWGNT010000000
VERSION     DAWGNT010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7956
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.085"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            178..1347
                     /gene="prpF"
                     /locus_tag="WHR98_001277"
     CDS             178..1347
                     /gene="prpF"
                     /locus_tag="WHR98_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004464330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylaconitate cis-trans isomerase PrpF"
                     /protein_id="HEZ2307956.1"
                     /translation="MPQIKIPAVYYRGGTSKGIFFKRTDLPAAAQKAGEARDKILLRV
                     LGSPDPYGKQIDGLGNASSSTSKAVILDKSERADHDVDYLFGQVSIDKPFVDWSGNCG
                     NLTAAVGAFAIEQGLVDKGKIPSDGICTVKIWQKNIGKTIIAHVPMQNGAVLETGDFE
                     LDGVTFPAAEVQIEFLDPADGEGSMFPTGNLVDEIDVPNIGRLKATLINAGIPTVFLN
                     AADLGYTGKELQDDINNDAAALEKFEKIRAYGALKMGLISDVSEAAARAHTPKVAFVA
                     PAADYTASSGKTVNAADIDLLVRALSMGKLHHAMMGTASVAIATAAAVPGTLVNLAAG
                     GGTRKEVRFGHPSGTLRVGAAAECQDGQWTATKAVMSRSARVMMEGWVRVPEDCF"
     gene            1760..2959
                     /locus_tag="WHR98_001278"
     CDS             1760..2959
                     /locus_tag="WHR98_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEZ2307957.1"
                     /translation="MSDQLILVLNCGSSSLKGAVIDRKSGSVVLSCLGERLTTPEAVI
                     TFNKDGNKRQVPLSGRNCHAGAVGMLLNELEKHELHDRIQAVGHRIAHGGEKYSESVL
                     IDQAVMDELNACIPLAPLHNPANISGILAAQEHFPGLPNVGVMDTSFHQTMPERAYTY
                     AVPRELRKKYAFRRYGFHGTSMRYVAPEAARILGKPLEDIRMIIAHLGNGASITAIKN
                     GKSVDTSMGFTPIEGLVMGTRCGDIDPGVYSYLTSHAGLDVAQVDEMLNKKSGLLGIS
                     ELSNDCRSLEIAADEGHEGARLALEVMTYRLAKYIASMAVGCGGVDALVFTGGIGENS
                     RNIRAKTVSYLDFLGLHIDTKANMEKRYGNSGIISPTDSSPAVLVVPTNEELMIACDT
                     AELAGIL"
     gene            3067..3687
                     /locus_tag="WHR98_001279"
     CDS             3067..3687
                     /locus_tag="WHR98_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003680049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HEZ2307958.1"
                     /translation="MAQFFAIHPDNPQERLIKQAVEIVNQGGVVVYPTDSCYALGCKL
                     GDKAAMERILSIRKIDLKHHLTLMCADLSELGTYAKIDNVQFRQLKAATPGPYTFILQ
                     ATKEVPARTLHPKRKTIGLRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEI
                     RECLEHAVDLVIDGGWCGTEPTTVVDMTDGTELVRQGCGDTAVFGL"
     gene            complement(3814..4257)
                     /locus_tag="WHR98_001280"
     CDS             complement(3814..4257)
                     /locus_tag="WHR98_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEZ2307959.1"
                     /translation="MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKV
                     VTALVKGGFLHSVRGKGGGLRLAAPPDRINIGSVVRHLEPMQLVECMGENNECLITPS
                     CRLTGILGGAMKSFFTYLDGFTLQDLLNKPTYDLLYEPRIPIAVQ"
     gene            4431..4799
                     /locus_tag="WHR98_001281"
     CDS             4431..4799
                     /locus_tag="WHR98_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEZ2307960.1"
                     /translation="MKPLKRHPALIGLSRDHHHSLSLCVRLLRTPEERHRDELEPHFA
                     ELETHFREEEAKFAPIWQNVAPELKQRFEKDHARLRQMMASPEYGNAAWNTAFATTLR
                     DHARFEERELFPAAEPFLPA"
     gene            4844..5998
                     /locus_tag="WHR98_001282"
     CDS             4844..5998
                     /locus_tag="WHR98_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HEZ2307961.1"
                     /translation="MKFTKHPVWAMAFRPFYSLAALYGALSVLLWGFGYTGTHELSGF
                     YWHAHEMIWGYAGLVVVAFLLTAVATWTGQPPTRGGVLVGLTIFWLAARIAAFIPGWG
                     ASASGILGTLFFWYGAVCMALPVIRSQNQRNYVAVFALFVLGGTHAAFHVQLHNGNLG
                     GLLSGLQSGLVMVSGFIGLIGTRIISFFTSKRLNVPQIPSPKWVAQASLWLPMLTAML
                     MAHGVMPWLSAAFAFAAGVIFTVQVYRWWYKPVLKEPMLWILFAGYLFTGLGLIAVGA
                     SYFKPAFLNLGVHLIGVGGIGVLTLGMMARTALGHTGNPIYPPPKAVPVAFWLMMAAT
                     AVRMVAVFSSGTAYTHSIRTSSVLFALALLVYAWKYIPWLIRPRSDGRPG"
     gene            complement(6055..6927)
                     /locus_tag="WHR98_001283"
     CDS             complement(6055..6927)
                     /locus_tag="WHR98_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEZ2307962.1"
                     /translation="MPILNHIALIGVGLIGGSFVLDLKRQGLVRTVTGIDTDRDNLER
                     ALERGVIDRASVAIDADSIGGADLVLIATPVATFPAILTALRPVLPEHTWISDVGSTK
                     SSVIEAFRRCLPDRLHRCIAAHPIAGSDRSGAQAAQFGLFRHRKLIITPHGGEHSDGI
                     ALVEELWHAVGAEIYTMDAQRHDAVFAAVSHMPHLTAFAYVHQILDHPDGQEYLKFAA
                     TGFRDFTRIASGHPAVWADICLANKDSLLQLVQGLGKQLDVLADILTTDDREALYRYF
                     EEAKTTRDRWLDGN"
     gene            7012..7824
                     /locus_tag="WHR98_001284"
     CDS             7012..7824
                     /locus_tag="WHR98_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEZ2307963.1"
                     /translation="MDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGVDWVLLPEY
                     WVLMGANDTDKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPEAGKVMNTLL
                     VYGRDGKRTGLYHKMHLFGFSGLGERYAEADTIRAGGDVPHLSAEGVSVAAGICYDVR
                     FPEFFRRQLPFDVLMLPAAFTHTTGKAHWELLLRARAVENQCYVVAAAQGGLHENGRR
                     TFGHSMIVDPWGDVLDVLPEGEGIVTADIDANRLNSVRNRLPALKYRVLDAV"
BASE COUNT         1720 a         2198 c         2308 g         1730 t
ORIGIN      
        1 gattcccgcc tgcgcgggaa tgacggggtt taataatctg ccgtatcaca acacagtagc
       61 cgtagattgg ggcgaacccc gacagtttgc ggaatcaaac ggctttggtc ggagtggcag
      121 cctaatccac tataaaaatc gtgggcagag cccacgctac ataaggagaa tctagaaatg
      181 ccgcaaatta aaattccagc cgtttactac cgcggcggta catctaaagg cattttcttc
      241 aaacgtaccg atctgccggc cgctgctcag aaagcaggcg aggcacgcga caaaatcctg
      301 ttgcgcgtac tcggcagccc ggacccttac ggcaaacaga ttgacggttt gggcaatgcc
      361 agttcgtcca ccagcaaagc cgtgattttg gacaaatccg aacgcgccga tcacgatgtc
      421 gattatttgt tcggacaagt ttccatcgac aaaccttttg tcgattggag cggcaactgc
      481 ggcaacctca ccgccgccgt gggcgcattt gccatcgagc aaggcttggt cgataaaggc
      541 aagattcctt cagacggcat ctgcacagtc aaaatctggc agaaaaacat cggcaaaacc
      601 attattgccc atgtaccgat gcaaaacggc gcagttttgg aaacaggcga ttttgagctc
      661 gacggcgtaa cgttcccggc agccgaagta caaatcgaat ttcttgatcc agccgacggc
      721 gaaggcagta tgttcccaac cggcaatttg gtcgatgaaa ttgatgtgcc gaatataggc
      781 cgtttgaaag ccacgctcat caacgcgggc attccgaccg ttttcctgaa tgccgccgac
      841 ttgggctaca cgggcaaaga gttgcaagac gacatcaaca acgatgccgc ggctttggaa
      901 aaattcgaga aaatccgcgc ttacggtgcg ctgaaaatgg gtctgatcag cgacgtatcc
      961 gaagctgccg cccgcgcgca cacgccgaaa gtcgccttcg tcgcgcccgc cgccgattac
     1021 accgcctcca gtggcaaaac cgtgaacgcc gccgacatcg atttgctggt acgagccctg
     1081 agcatgggca aactgcacca cgcgatgatg ggtaccgcct ctgttgccat tgcgaccgcc
     1141 gccgccgtgc ccggaacgct ggtcaacctt gcagccggag gcggaacgcg taaagaagtg
     1201 cgcttcgggc atccttccgg cacattgcgc gtcggtgcag ccgccgaatg tcaggacgga
     1261 caatggacgg ccaccaaagc ggttatgagc cgcagcgcac gcgtgatgat ggaaggttgg
     1321 gtcagggtgc cggaagattg tttttaaatt gacgtagcat gggtttgccc gcgagccata
     1381 aacaggtcgt ctgaaaaaca agtaaacatc aaatcactga ccattccttt cccttgccct
     1441 gtggcggaag gcggcaaatc acaaggaaga acacggaaac cccgataaaa gacagcttcc
     1501 cgtattaccg tcattcccgc gcaggcggga atccagacct gtcaatatgg aggattggca
     1561 gggaaaaaca ggtttcgtga gttctacatt ctggattccc gccacagcct gtcctcgcgt
     1621 aggcggggac ggaataacga tagaaaatgc ggcatatgct ttgcccaaag aggccgtctg
     1681 aaacaccttg cgcctgatgt ctgccttttt cagacgaccc cacaccaaaa aacaaccaca
     1741 aactacaagg agaaacatca tgtccgacca actcatcctc gttctgaact gcggcagttc
     1801 atcgctcaaa ggcgccgtta tcgaccgcaa aagcggcagc gtcgtcctaa gctgcctcgg
     1861 cgaacgcctg accacgcccg aagccgtcat tacgttcaac aaagacggca acaaacgcca
     1921 agttcccctg agcggccgca actgccatgc cggcgcggtg ggtatgctgt tgaacgaact
     1981 ggaaaaacac gaactacacg accgcatcca agccgtcggc caccgcatcg cccacggcgg
     2041 cgaaaaatac agcgagtctg ttttgatcga ccaggccgta atggacgaac tcaatgcctg
     2101 cattccgctt gcgccgctgc acaaccccgc caacatcagc ggcatcctcg ccgcgcagga
     2161 acatttcccg ggcctgccca atgtcggcgt gatggatacc tcgttccacc aaaccatgcc
     2221 ggagcgtgcc tacacttatg ccgtcccgcg cgaattgcgt aaaaaatacg ctttccgccg
     2281 ctacggtttc cacggtacca gtatgcgtta cgttgcccct gaagccgcac gcatcttggg
     2341 caaaccgttg gaagacatcc gcatgattat tgcccactta ggcaacggcg catccattac
     2401 cgccatcaaa aacggcaaat ctgtcgacac cagtatgggc ttcacgccga tcgaaggttt
     2461 ggtaatgggt acgcgctgcg gcgatatcga cccgggcgta tacagctatc tgacttcaca
     2521 cgccggtttg gatgttgcac aagttgatga aatgctgaat aaaaaatcag gcttgctcgg
     2581 tatttccgaa ctctccaacg actgccgttc tttggaaatc gctgcggatg aaggccatga
     2641 aggcgcgcgc ctcgccctcg aagtcatgac ctaccgcctc gccaaataca tcgcttcgat
     2701 ggctgtgggc tgcggcggcg ttgacgcact cgtgttcacc ggcggtatcg gcgaaaactc
     2761 gcgtaatatc cgtgccaaaa ccgtttccta tcttgatttc ttgggtctgc acatcgacac
     2821 caaagccaat atggaaaaac gctacggcaa ttcgggcatt atcagcccga ccgattcttc
     2881 tccggctgtt ttggttgtcc cgaccaatga agaactgatg attgcctgcg acactgccga
     2941 acttgccggc atcttgtagc caaaaaaggg acgagtccgc aaaaatgccg tctgaaattt
     3001 tcagacggca ttttgtttgg cgtttgggcg tacaatacgg aaaacatgac gataaggaaa
     3061 caaaccatgg cacagttttt cgctattcat cccgacaatc cccaagaacg cctcatcaag
     3121 caggcggttg aaatcgtcaa tcaaggtggc gtggtggttt atccgaccga ttcgtgttac
     3181 gccttgggtt gcaaactcgg cgataaggcg gcgatggaac gcatactctc catccgcaaa
     3241 atcgatttga aacaccacct gaccctgatg tgcgccgatt tgagcgagtt gggcacgtac
     3301 gccaaaatcg acaacgtaca gtttcgtcag cttaaggccg ccacgcccgg accttatacc
     3361 tttatcttgc aggcgacgaa ggaagtgccg gcgcgcacgc tgcacccgaa acgcaaaacc
     3421 atcgggctgc gtattcccga taatgccatt gcacaagccc tgctggggga attgggcgaa
     3481 ccgcttttaa gctgcaccct gatgctgccc gaagacggcg aaccattgac cgatccttat
     3541 gaaatccgcg agtgtttgga acacgccgtc gatttggtga ttgacggcgg ctggtgcgga
     3601 accgagccga ccaccgtcgt cgatatgacc gacggcacgg aattggtgcg ccaaggttgc
     3661 ggcgatacgg cggtgttcgg tttgtaggga aaccgatgcc gtctgaagca tcggctgttc
     3721 agacggcatt gcgcgccttg ccggcggcag tccgaaatgc cggcgcgtat cgcgctcggt
     3781 cggaatatcc gtttgaaacg gcattttgat gcattactgc accgcaatcg gaattctcgg
     3841 ttcgtagagc aggtcgtagg tcggcttgtt gagtaggtct tggagcgtga aaccgtccag
     3901 atacgtgaaa aacgacttca tcgcgccgcc gagtatgcct gtcagacggc aggacggtgt
     3961 gatcaggcat tcgttgttct cgcccatgca ctcgaccagc tgcatcggtt cgaggtggcg
     4021 gacgaccgag ccgatgttga tgcggtcggg cggtgcggca agccgcagac cgccgccttt
     4081 tccgcgcacg ctgtggagga agccgccttt gaccagcgcg gtaacgactt tcatcagatg
     4141 gcttttggaa atgccgtaag ttccggcgat ggtactgatg ttgaccagcg catcgtcgtt
     4201 gatggcagtg tagataagga cgcgcagccc gtagtccgta tgttgtgtca aatacatgat
     4261 tttctcggta tggattgtta ttcttatcgg tacggtttaa ggttcacgga caatacctta
     4321 atggttgaaa ccctgtccgt cggggcggta gaatgcagcc tgtctgcggc ggtatgccgt
     4381 ctgaaacatc cgcgctaccg tttgataatt tgttattgta actcaaaatc atgaaaccgt
     4441 tgaaacgaca tcccgccctt atcgggcttt cgcgtgacca ccaccattcg ctttccctgt
     4501 gcgtgcgtct gttgcggacg ccggaagaaa ggcatcggga cgaactcgaa ccgcattttg
     4561 ccgaattgga aacccatttt cgcgaagaag aagccaagtt tgccccaatt tggcagaatg
     4621 tcgcccccga attgaaacaa cgtttcgaga aagaccacgc ccgactgcgg cagatgatgg
     4681 caagccccga atacggtaac gcggcgtgga ataccgcttt tgccacaacc ctgcgcgacc
     4741 acgcgcgctt tgaagaacgc gagctgtttc ccgccgccga accgtttttg ccggcatgat
     4801 tccgttttgc ggcaaatata ttaatgataa acaaggaaca cacatgaaat ttaccaagca
     4861 ccccgtctgg gcaatggcgt tccgcccatt ttattcgctg gcggctctgt acggcgcatt
     4921 gtccgtattg ctgtggggtt tcggctacac gggaacgcac gagctgtccg gtttctattg
     4981 gcacgcgcat gagatgattt ggggttatgc cggactggtc gtcgtcgcct tcctgctgac
     5041 cgccgtcgcc acttggacgg ggcagccgcc cacgcggggc ggcgttctgg tcggcttgac
     5101 tatcttttgg ctggctgcgc ggattgccgc ctttatcccg ggttggggtg cgtcggcaag
     5161 cggcatactc ggtacgctgt ttttctggta cggcgcggtg tgcatggctt tgcccgttat
     5221 ccgttcacag aatcaacgca actatgttgc cgtgttcgcg ctgttcgtct tgggcggcac
     5281 gcatgcggcg ttccacgtcc agctgcacaa cggcaaccta ggcggactct tgagcggatt
     5341 acagtcgggc ttggtgatgg tgtcgggttt tatcggtctg attggtacgc ggattatttc
     5401 gttttttacg tccaaacggt tgaatgtgcc gcagattccc agtccgaaat gggtggcgca
     5461 ggcttcgctg tggctgccca tgctgaccgc catgctgatg gcgcacggcg tgatgccttg
     5521 gctgtcggcg gctttcgcgt ttgcggcagg cgtgatcttt accgtgcagg tgtaccgctg
     5581 gtggtataaa cccgtgttga aagagccgat gctgtggatt ctgtttgccg gctatctgtt
     5641 taccggattg gggctgattg cggtcggcgc gtcttatttc aaacccgctt tcctcaatct
     5701 gggtgtgcat ctgatcgggg tcggcggtat cggcgtgctg actttgggca tgatggcgcg
     5761 taccgcgctt ggtcatacgg gcaatccgat ttatccgccg cccaaagccg ttcctgtcgc
     5821 attttggctg atgatggcgg caactgccgt ccgcatggtt gccgtatttt cttccggtac
     5881 agcctacacg cacagcatac gcacctcttc ggttttgttt gcacttgcgc ttttggtgta
     5941 tgcgtggaaa tacattccgt ggctgattcg tccgcgttcg gacggcaggc ccggttgaga
     6001 caaaccgccg cagatttcgg gtctgggcgg tttgcttttc agacggcagg gcggtcagtt
     6061 gccgtccagc cagcggtcgc gtgtggtttt ggcttcttca aaatagcggt acagggcttc
     6121 gcggtcgtcg gtggtcagga tgtctgccaa aacgtccaac tgtttgccca agccttgaac
     6181 cagttgcagc aggctgtctt tgttggcaag gcagatgtcc gcccacacgg cgggatgacc
     6241 ggaggcgatg cgggtgaagt cccgaaagcc cgtggcggcg aatttcagat attcctgtcc
     6301 gtcggggtgg tcgagaatct ggtggacata ggcgaaggcg gtcaggtggg gcatatggga
     6361 gacggcagcg aaaaccgcgt cgtggcgttg cgcgtccatc gtataaattt ccgcaccgac
     6421 cgcgtgccac agttcttcta ccaaggcaat gccgtctgaa tgttcgccgc cgtgtggcgt
     6481 gatgatgagt tttctgtggc ggaacagccc gaactgcgcg gcttgcgcac cgcttctgtc
     6541 cgaaccggca atcgggtggg cggcgatgca gcggtgcagg cggtcgggca gacagcggcg
     6601 gaaggcttcg atgaccgaag atttggtgct gccgacatcg gaaatccaag tgtgttccgg
     6661 caaaacgggg cgcagcgcgg tcaaaatggc gggaaaggtg gcgacgggcg tggcaatcag
     6721 taccaagtcc gcaccgccga tgctgtccgc gtcgatggca acggaagccc ggtcaatcac
     6781 gccgcgttcc aatgcacgtt cgaggttgtc gcggtcggtg tcgataccgg taacggtgcg
     6841 gacgagtccc tgccttttga ggtcgagaac gaacgaaccg ccgatcagcc ctacaccgat
     6901 gagggcaata tggttcaaaa tgggcatttg tgtaaacggt tttcgcaaag taccgtcatg
     6961 gtagcctatc ggcggaatat gccgcaaggt cggcaggaaa aaggagaaga aatggacaaa
     7021 atcagagttg ccgccgtgca gatggtgtcg ggcgtgtcgc cggaaaccaa cgtcgccgcc
     7081 atgaaacgcc tggtcgcacg ggcggcggag cagggtgtgg attgggtgct gctgcccgaa
     7141 tattgggtgc tgatgggcgc aaacgatacc gacaaactcg cgcttgccga gcctttgggc
     7201 ggcggacgct ttcagacggc attgagcgaa acggcgaaag aatgcggcgt ggtgctgttc
     7261 ggcggaaccg tgccgctgca aagccccgag gcgggcaagg tcatgaatac tttattggtg
     7321 tacgggcgcg acggcaaacg gacggggctg taccacaaaa tgcacctctt cggcttttcc
     7381 ggtttgggcg aacgctatgc cgaagccgat accatccgcg cgggcgggga tgtgccgcac
     7441 ttgtcggcag aaggcgtgtc ggtggcggcg ggcatttgtt acgatgtccg ctttcccgaa
     7501 tttttccgcc gccagctgcc gtttgacgta ttgatgctgc ccgctgcgtt tacgcacacg
     7561 acgggcaagg cgcattggga gctgctgctg cgcgcgcgtg ccgtcgaaaa ccaatgttac
     7621 gtcgtggcgg cggcacaggg cggtttgcac gaaaacggac ggcgcacgtt cggacacagc
     7681 atgattgtcg atccgtgggg cgacgtattg gacgtattac ccgaaggcga aggcatcgtt
     7741 acggcagaca tcgatgccaa ccgcctgaac agcgtccgca accgcctgcc cgccttgaaa
     7801 taccgggttt tggatgccgt ctgaaggttc agacggcatc ggtgccgggg aatcagcggg
     7861 ctgtaggatg ggcttcagcc tgccatttcc atcaatccca catttctacc gttttcatcg
     7921 aatccatcga atccgcccct ttcgacgacc cagtcc
//
LOCUS       DAWGNT010000086         7927 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.086, whole genome shotgun sequence.
ACCESSION   DAWGNT010000086 DAWGNT010000000
VERSION     DAWGNT010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7927
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.086"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(51..2093)
                     /gene="recG"
                     /locus_tag="WHR98_001285"
     CDS             complement(51..2093)
                     /gene="recG"
                     /locus_tag="WHR98_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEZ2307964.1"
                     /translation="MMSPETQKQLKITDVSVKKLDKLNLHTAWDLVLHLPLRYEDETH
                     IMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIADDSGSVLFLRFIHFYASHQKQ
                     TAVGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
                     QTALDVTPLHDTLPDALLCRLKLPHLAESLRLLHLPPPSFTIHQLSDGTLPAWQRLKF
                     DELLAQQLSMRLARQKRIGGTAAALGGDGTLTQALRQALPFALTDAQEKVVSEICRDM
                     AQTYPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEILAEQHFIKFKQWLE
                     PLGIEVVRLFGSLRKKAKDEAKAKLADGSVKIAVGTHALFSDGVAFHNLGLTIVDEQH
                     RFGVAQRLALKNKGREVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRL
                     VNNVRRAEVEGFVLGTCRKGRQAYWVCPLIEESETLQLQTAAETLARLQTALPELNIG
                     LVHGRMKAAEKAEVMARFSSGGLNVLVATTVIEVGVDVPNAALMVIEHAERMGLAQLH
                     QLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLG
                     ARQSGVPMLRFAKLEEDLHLLEQVREIAPMLIEQNPEIVEAHLARWLSGREGYLGV"
     gene            complement(2179..2622)
                     /gene="secB"
                     /locus_tag="WHR98_001286"
     CDS             complement(2179..2622)
                     /gene="secB"
                     /locus_tag="WHR98_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HEZ2307965.1"
                     /translation="MSEELQPVFSIERLYVKDLSLEVPHAPQIFLEQGEPEVDMRVST
                     GSQKLEDGYYNVDVTVTVTAKLDNERTMFLNEVTQSGIFRLENIPEEDVQLLLGVACP
                     NILFPYAREAVSGTVTRAGFPPVLLAPINFEAIYQQQQEAEAAGA"
     gene            complement(2643..2900)
                     /gene="grxC"
                     /locus_tag="WHR98_001287"
     CDS             complement(2643..2900)
                     /gene="grxC"
                     /locus_tag="WHR98_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HEZ2307966.1"
                     /translation="MQTVTMYTGPFCPYCAMAKRLLHAAGVGHIDEIRVDASPEAFAE
                     MQQLSGQRSVPQIFIGETHVGGFTDLYRLQQEGGLDGLLNP"
     gene            3113..4606
                     /gene="rng"
                     /locus_tag="WHR98_001288"
     CDS             3113..4606
                     /gene="rng"
                     /locus_tag="WHR98_001288"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HEZ2307967.1"
                     /translation="MLSGLPIPKDIARPPETILVNITPQETRVAVLEENNICELHIER
                     NSEHSLVGNIYLGVVRRVLPGMQSAFIDIGLERAAFLHIVDVLEQRRNPEETQRIEHM
                     LFEGQSVLVQVIKDPINTKGARLSTQISLAGRFLVHLPQEDHIGVSQRIEDDAERSSL
                     RERLDKLLPENACRGYIIRTNAENATDEQLQSDIDYLTKVWEHIQEQAKIRPPETLLY
                     QDLPLSLRVLRDMVGCDTQKILVDSTVNHGRMTRFAEQYVHGALGRIELFKGERPLFE
                     THNVEQEISRALQPRVNLNFGSYLIIESTEAMTTIDVNTGGFVGARNFDETIFRTNLE
                     ACHTIARELRLRNLGGIIIIDFIDMAQESHREAVLQELAKALAFDRTRVTLHGFTSLG
                     LVELTRKRSRENLNQVLCEPCPSCQGRGRLKTPQTVCYEIQREIVREARRYDAESFRI
                     LAAPNVIDLFLDEESQSLAMLIDFIGKPISLAVETAYTQEQYDIVLM"
     gene            complement(4641..5891)
                     /locus_tag="WHR98_001289"
     CDS             complement(4641..5891)
                     /locus_tag="WHR98_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HEZ2307968.1"
                     /translation="MFVPLAMLAGMFSYYETFHETEALQDDLLRQAALYVAPDSKPET
                     LPEGDGDTRIFVQMPQQEDPVVSLPAHLADGLHTLQADGDDDYYRVYIRTTEQGRIAV
                     MQENEYREDLAADAARQSVLPLLAALPLMILLTVWITHKAMRPVRKLSQSLEQRRIND
                     LSALSVDNIPSEIRGFVTAINLLLKRADEDIRHRQRFVADAAHELRTPMTALSLQAER
                     LNNMSLPPDAARQSAVLQQSIRRNKHLLEQLLALARSQSDETPLAKTTFGLQSRFRQV
                     LQELMPLALEKRQDIGVAVGGDVEIFADETEIYTLVKTFVDNAIRYTPSEGRIDLGFT
                     DEGKYLAVWVEDNGNGIPESERVRVLDPFYRILGTEQQGTGLGLSIADTLAKKYGGYL
                     ELTDSRRFGHGLLIRALLDKETLK"
     gene            complement(5887..6062)
                     /locus_tag="WHR98_001290"
                     /pseudo
     CDS             complement(5887..6062)
                     /locus_tag="WHR98_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692565.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            complement(6284..7597)
                     /locus_tag="WHR98_001291"
     CDS             complement(6284..7597)
                     /locus_tag="WHR98_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HEZ2307969.1"
                     /translation="MLTFIGLLIIGVIVWLLLTEKVSPIIALILVPLFGALLAGFDVS
                     QLKEFYSGGTKSVMQIVIMFMFSILFFGIMNDVGLFRPMIGGLIKLTRGNIVAVSVGT
                     VLVSVVAQLDGAGATTFLLVVPALLPLYKRLHMNPYLLFLLLTSSAGLINLLPWGGPT
                     GRVASVLGADVGELYKPLLTVQIIGVVFILALSLLLGVREKRRIVRELGALPAVADLI
                     KPVPLSEEEQKLARPKLFWWNVLLFLAAMSLLFSGIFPPGYVFMLAATAALLLNYRSP
                     QEQMERIYAHAGGAVMMASIILAAGTFLGILKGAGMLDAISKDIVHILPDALLPYLHI
                     AIGVLGIPLELVLSTDAYYFGLFPIVEQITSQAGVAPEAAGYAMLIGSIVGTFVTPLS
                     PALWMGLGLAKLSMGKHIRYSFFWAWGLSLAILASSIAAGIVPLP"
BASE COUNT         1879 a         2346 c         2047 g         1655 t
ORIGIN      
        1 aaatcagatt tccgttacac ttttttccaa tatttcagac ggcattttgc tcacacgccc
       61 aaataccctt ccctgccgga aagccacctt gccaaatgcg cttcgacgat ttcggggttt
      121 tgctcaatca gcatcggggc gatttcgcgc acttgttcca aaaggtgtaa gtcttcttca
      181 agcttggcga agcgcagcat aggcacgccg ctttggcgcg cgccgagaaa ttcgccgggg
      241 ccgcggatat tgaggtcttg gcgggcgatt tcaaagccgt cggtgtgttc gtaaatcact
      301 ttcaaccgcg ctttggcgag ttcgcccaag ggttcggcaa acaggaggac gcacacgctt
      361 tctgccgcgc cgcgcccgac ccgaccgcgt aattggtgca gctgcgccaa gcccatgcgc
      421 tcggcgtgtt cgatgaccat cagggcggca ttgggcacat ctacgccgac ttcgatgacg
      481 gtggtggcga ccaagacgtt cagccccccc gaagaaaacc gcgccatcac ttcggccttt
      541 tcggcggcct tcatgcgccc gtgtaccagt ccgatattga gttcgggcaa tgccgtctga
      601 agccgggcga gggtttcggc ggcggtttgc agttgcaggg tttcgctttc ttcaatcaat
      661 gggcagaccc aatacgcctg ccgccctttt cggcaagtgc cgaggacgaa gccttcgact
      721 tcggcacggc ggacgttgtt gacgaggcgc gttttaatcg gtgtgcgccc gggcggcaat
      781 tcgtcgatga cggacacgtc caaatcggcg aaaaaactca tcgcaagcgt gcgcgggatg
      841 ggcgtggcgg acatcatcag ctgatggact tcgcgccctt tgtttttgag ggcgaggcgt
      901 tgggcaacgc cgaaacggtg ctgttcgtcc acaatggtca agcccaaatt gtgaaacgcc
      961 acgccgtctg aaaacagggc gtgcgtgccg acggcgattt tgacgctgcc gtcagccagt
     1021 ttggctttgg cttcgtcttt ggctttttta cgcaaactgc caaaaaggcg gacaacttca
     1081 atgcccaaag gttcgagcca ttgtttaaat ttaataaaat gctgttcggc aaggatttca
     1141 gtgggcgcca ttacagccac ctgcgcaccg gattcgatag ccgtcaaagc agacaaagca
     1201 gccacaatgg ttttgccgct gccgacatcg ccctgcagca ggcggtgcat cgggtaggtt
     1261 tgcgccatat cgcggcagat ttcggaaaca actttttctt gcgcatcggt cagggcaaac
     1321 ggcagggctt ggcgcagggc ttgggtcaat gtgccgtcgc cgcccaatgc cgccgccgtg
     1381 ccgccgatac gcttctgtcg cgccaagcgc atcgaaagct gttgcgccaa aagttcatcg
     1441 aatttgagcc gttgccatgc aggcagcgtg ccgtctgaaa gctgatgaat cgtgaaactc
     1501 ggcggcggca aatgcaaaag acgcaggctt tcggcgaggt gtggcagctt cagacggcac
     1561 agcagggcat cgggcagcgt gtcgtgcagc ggcgtaacgt ccaacgccgt ctgaataata
     1621 cggcgcaaag tgggctggtt caaaccgttt acggtcgggt aaaccggcgt gaggctttcc
     1681 gccaaaccgc cgccctcggc atcgcggatt ttgggatgaa tcatctcgtc gccgtaaaag
     1741 ccgtgtttga tttcgcccac ggcgcggatg cgtttgccga ccgccgtctg cttctgatgg
     1801 ctggcgtaaa agtggatgaa gcgcaggaaa aggacgctgc cggagtcgtc ggcaatttgg
     1861 acaatcagct gcttgcgcgg tttgaacgtt acttcctgat ggataacctc gccctcgacc
     1921 tggcacggca cgccgatcgg cgcgtcctta atcggcataa tgtgcgtctc gtcctcgtaa
     1981 cgcagcggca ggtgcaacac caaatcccac gcggtatgaa gattgagttt gtcgagcttc
     2041 ttgacggaaa catcggtgat tttgagctgt ttctgggttt cgggcgacat cataggcaga
     2101 ttcctttgga cgcgcctatt ttatccgaaa acaaaaatgc cgtctgaaac ggattcagac
     2161 ggcatcgaca ggcaggaatc aagccccggc ggcttcggct tcctgctgtt gttggtaaat
     2221 cgcctcaaaa ttaatcggcg cgagcaggac gggcgggaag ccggcgcgcg ttaccgtacc
     2281 ggaaacggct tcgcgcgcgt aagggaagag gatgttcgga cacgccacgc ccagcagcag
     2341 ctgcacatct tcttcgggga tgttttccaa acggaagatg ccgctttggg ttacttcgtt
     2401 caaaaacatc gtgcgctcgt tatccagctt ggcggtaacg gttacggtaa cgtccacgtt
     2461 gtagtagccg tcttccagct tttggctgcc ggtggaaacg cgcatatcca cttcaggctc
     2521 gccctgttcc aaaaagattt gcggcgcgtg cggcacttcc aaagacaagt ctttgacata
     2581 cagtcgctcg atactgaata cgggttgcag ttcttcgctc attttgtttt cctagttggg
     2641 ggttaagggt tcagcagtcc gtccagcccg ccttcctgct ggaggcggta gaggtcggta
     2701 aatccgccga cgtgcgtttc gccgatgaaa atctgcggca cgctgcgctg tcccgaaagc
     2761 tgctgcattt cggcaaaggc ttcggggctt gcatcgacac ggatttcgtc gatatgtccg
     2821 acacctgccg cgtgcagcag ccttttcgcc atcgcgcagt aggggcaaaa cggacctgtg
     2881 tacatggtaa cggtctgcat attgggtttc cgaaagtttt gcaatgataa tcaatatagg
     2941 ggcatttccc ctgtttggca agtgcggaac agatgcacgt tcaaacggca tgtgcggaat
     3001 gtgtcaaagt ttctttttta aagtatgata gacattgtga aaaatatttt tgcacccgcg
     3061 ctgcgcggcg gaacggatgc aaaatatttt tattacattt tcaggaaaaa ccatgttgtc
     3121 aggactcccc atccccaaag acatcgcgcg cccgcccgaa acgatattgg tcaacatcac
     3181 gccgcaggaa acgcgcgtag cggtgttgga ggaaaacaat atctgcgagc tgcacatcga
     3241 gcgcaacagc gaacacagcc tggtcggcaa tatctatctg ggcgtggtgc gccgcgtgct
     3301 gcccgggatg cagagcgcgt ttatcgacat cggcttggaa cgcgcggcgt ttttacacat
     3361 cgtcgatgtc ctcgaacaac gccgcaaccc cgaagaaacc cagcgcatcg aacatatgct
     3421 gtttgaaggg cagtctgttt tggtgcaggt catcaaagac ccgatcaaca ccaaaggcgc
     3481 gcggctttcc acccaaatct cgctggcggg gcgtttcctc gtccatcttc cgcaagaaga
     3541 ccacatcggc gtgtcccaac gcatcgaaga cgatgccgaa cgcagcagcc tgcgcgaacg
     3601 cctcgacaag ctcctgccgg aaaatgcctg ccggggctac atcatccgca ccaacgccga
     3661 aaacgccacc gacgaacagc tccagtccga catcgactac ctgaccaaag tgtgggaaca
     3721 catccaagaa caggcgaaaa tccggccgcc ggaaaccctg ctttatcagg atttgccctt
     3781 gagtttgcgc gtattgcgcg atatggtcgg ctgcgacacg caaaaaatcc tcgtcgattc
     3841 caccgtaaac cacgggcgca tgacgcgttt tgccgaacaa tacgtccacg gcgcattggg
     3901 caggatagaa ttgttcaaag gcgaacgccc gctgtttgaa acccacaacg tcgaacagga
     3961 aatcagccgc gccctgcaac cgcgcgtcaa cctcaacttc ggcagctacc tgattatcga
     4021 atccaccgaa gccatgacca cgatagacgt gaacaccggc ggcttcgtcg gcgcacgcaa
     4081 cttcgacgaa accatcttcc gcaccaacct cgaagcctgc cacaccatcg cccgcgaatt
     4141 gaggctacgc aacctcggcg gcatcatcat catcgacttc atcgatatgg cgcaggaaag
     4201 ccaccgcgaa gccgtgttgc aggagcttgc caaagccctc gccttcgacc gtacccgcgt
     4261 taccctgcac ggttttacca gcctggggct ggtcgagctg acgcgcaaac gctcgcgcga
     4321 aaacttaaac caagtcctct gcgaaccctg cccttcctgc caaggcagag gccgtctgaa
     4381 aacgccgcaa accgtgtgct acgaaatcca gcgcgaaatc gtccgcgaag cgcgccgtta
     4441 cgatgccgaa agtttccgca tcctcgccgc ccccaacgtc atcgatttgt ttttggacga
     4501 agaatcgcaa tccttggcaa tgctgataga tttcatcggc aaaccgattt ctctggcggt
     4561 cgaaaccgct tacacgcagg aacaatacga tattgtgctg atgtaaaaaa tgccgtctga
     4621 agccttcaga cggcatctgt ctatttcagg gtttccttgt ccaacaaggc gcgtatcagc
     4681 agaccgtgtc cgaacctgcg gctgtcggtc agttccaaat atccgccgta ttttttggct
     4741 agcgtgtcgg caatcgacag ccccagcccc gtcccctgct gctccgttcc caaaatacgg
     4801 taaaacggat cgaggacgcg gacgcgttcg gattccggaa tgccgttccc gttatcttcc
     4861 acccacacgg caagatattt cccttcgtct gtgaaaccca aatctatcct gccttcggac
     4921 ggggtataac gtattgcgtt atcaacaaac gttttaacca aggtatagat ttcagtttca
     4981 tcggcaaata tttcgacatc acctccgacc gccacaccaa tgtcctgacg tttttccaag
     5041 gcaagcggca tcagttcctg caacacttgg cggaaacggc tttgcagacc gaatgtcgtt
     5101 ttcgccaaag gggtttcgtc cgactgcgaa cgcgccagtg ccaaaagctg ctcgagcagg
     5161 tgtttgttgc gccgtatgct ttgctgcaaa acggcagact gccgcgccgc atcgggtggc
     5221 agagacatat tgttgagccg ttccgcctga agggaaaggg ctgtcatcgg cgtacgcaat
     5281 tcgtgtgccg cgtcggcgac aaaccgctga cggtggcgga tgtcttcatc cgcacgtttc
     5341 aaaagcaggt tgatggcggt tacgaaccct ctgatttcac tgggaatatt gtccacactc
     5401 aaagcagaca ggtcattgat tcggcgttgt tcgagacttt gcgacaattt gcggacgggg
     5461 cgcatggctt tgtgcgtaat ccacacggtc agcagtatca tcagcggcag tgccgccagc
     5521 aggggcaaca cgctttgccg tgccgcatcc gccgccaaat cttcacggta ttcgttttcc
     5581 tgcataacgg caatccgtcc ctgttcggtc gtgcggatat agacgcggta ataatcgtcg
     5641 tccccgtccg cctgaagcgt gtgcagaccg tccgccagat gcgcaggcag gctgacaaca
     5701 gggtcttcct gctgcggcat ctgcacgaaa atgcgcgtat cgccgtcgcc ctcgggcaaa
     5761 gtttcgggtt tggaatcggg tgcgacgtac aatgccgcct gacggagcag gtcgtcctgc
     5821 aacgcttccg tttcgtggaa ggtttcgtag taggaaaaca tacctgcaag cattgccagc
     5881 ggaacaaaca tccaaaccgt cccgccccag caaacccaaa tccagcagca tcaagtcata
     5941 aggctgggca gcggcagccg cgcgccgttt ttgacccaat ccaccgcata gccgccgtct
     6001 ttcaaacttg ccgacaccgc ctccgcaatc atcgcatcgt cttccaccag caaaacacgc
     6061 atcaactttc ccttcaaaat aaaccgtgcc tattctaaca ccccaaaatt agccgcaatt
     6121 tagcggcctt tacgcttgcc ggtatttttc aaaactgcgg cacaaaaaac cgcgccggca
     6181 actgccttca gacggcattg gggcgcgatt gcaacacacg ggcaggcagg cagagcctgc
     6241 gacagaccac aggaacgatt cgggcttcag acggcttcgc cgtttacggc agaggcacga
     6301 ttcctgccgc tatcgaactg gccaatatcg ccagcgacaa accccacgcc cagaaaaacg
     6361 aataacggat gtgtttgccc atcgacaatt tcgccaaacc caagcccatc cacaaagccg
     6421 gcgaaagcgg cgtaacaaaa gtgccgacga tactgccgat caacatcgca taacctgctg
     6481 cttcaggcgc cacgcccgcc tgcgaggtaa tctgctccac aatcggaaac agtccgaaat
     6541 aataagcgtc cgtactcaaa accaactcaa gcggaatgcc caacacaccg atggcaatat
     6601 gcagataagg cagcagcgcg tccggcagga tatgcacaat gtctttggaa atcgcgtcca
     6661 acatccccgc acccttcaaa atccccaaaa acgtacctgc cgccaaaata atggacgcca
     6721 tcatcaccgc gccgccggcg tgggcataaa tccgctccat ctgttcctgc gggctgcggt
     6781 aattcaaaag caacgccgcc gttgcagcca gcataaatac ataacccggc gggaagatgc
     6841 ccgaaaaaag caggctcatc gccgccaaaa acagcaggac attccaccaa aacagtttcg
     6901 gacgcgccaa tttttgttct tcttccgaca aaggcaccgg ctttatcaaa tccgccacgg
     6961 cgggcaacgc gcccaactcc cggacaatcc gccttttttc acgcacaccc aaaagcaggg
     7021 acagcgcaag gataaacact acaccgataa tttgcaccgt caacaaaggt ttatacaatt
     7081 cgcccacatc tgcgcccaac acgcttgcaa cccgcccagt cggcccgccc cacggcagaa
     7141 ggttaatcaa tcccgcactg gaagtcagca gcaaaaacag caggtaagga ttcatatgca
     7201 gacgcttgta aagcggcaaa agggcgggga cgaccaataa aaacgtcgtc gcacccgccc
     7261 cgtccaactg cgccaccacc gacaccaaga ccgtccccac actcactgcc acgatattac
     7321 cccgagtcag cttaatcaaa ccgcctatca tcggacggaa cagccccaca tcgttcatga
     7381 ttccaaaaaa caaaatggaa aacataaaca taatcacaat ctgcatcacc gatttggtgc
     7441 cgcccgaata aaattctttt aattgggata catcaaaccc cgccagcaac gccccaaaca
     7501 gcggcaccaa gattaatgcg atgatgggcg acactttttc cgtcagcagc aaccatacga
     7561 tgaccccgat aatcagcagt ccgataaacg tcagcatcat ttctccttta ttttatttta
     7621 aacagaaaac cgcccgtgca ggcaaaaccg cccacagacg cgggataagc cttgcattct
     7681 acttttttat tttgaaacaa gtcaatcggt catttcctcc catttacgcc tgccgccatt
     7741 cctgtatccg tccgtcattt cacggcggca accgatacgg aacaaccggc aaaccggtat
     7801 cgggacggcg cgggggcatt catcccggta cgccgattca aacgaaaccg cccctatcat
     7861 tgcggagcgc ggggcgtgcc gtacacgtgg gattttatag tggattaaca aaaatcagga
     7921 caaggcg
//
LOCUS       DAWGNT010000087         7846 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.087, whole genome shotgun sequence.
ACCESSION   DAWGNT010000087 DAWGNT010000000
VERSION     DAWGNT010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7846
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.087"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(90..1886)
                     /locus_tag="WHR98_001292"
     CDS             complement(90..1886)
                     /locus_tag="WHR98_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017146933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEZ2307970.1"
                     /translation="MNTVSNYLSALREAMKAQGLDALVIPSADPHLSEYLPEHWQARR
                     ELSGFTGSVGTFVLTTDEAGVWVDSRYWEQAAKQLAGSGIELQKSGQVPPYNEWLAAN
                     LPENAAVGIPSDMVSLTGKRTLAQSLTAKNIRIEHPDDLLDQVWTSRPAIPAETVFIH
                     DPAYVSETAAEKLARVRAVMAEKGADYHLVSSLDDIAWLTNLRGSDVPFNPVFVSYLL
                     IGKDNAVLFTDRCRLNAEAAAALQTAGITVEPYAQVADKLAQIGGALLIEPNKTAVST
                     LVRLPESVCLIEGINPSTLFKSCKSEADIARIREAMEHDGAALCGFFAEFEDIIGNGG
                     SLTEIDVDTMLYRHRSVRPGFISLSFDTIAGFNANGALPHYSATPESHSTISGNGLLL
                     IDSGAQYKGGTTDITRVVPVGTPTAEQKRDNTLVLKAHIALAEAVFPENIPSPLIDAI
                     CRKPLWQAQCDYGHGTGHGVGYFLNVHEGPQRIAFAAPATPETAMKKGMVTSIEPGLY
                     RPGKWGIRIENLAANQAVAAPQETEFGSFLCFETLTLCPIDTRLIDTALMTDGEIDWV
                     NRYHAEVRRRLEPLTEGAAKAWLIKRTEPLAR"
     gene            1942..2283
                     /locus_tag="WHR98_001293"
     CDS             1942..2283
                     /locus_tag="WHR98_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307971.1"
                     /translation="MPSEKHNHLIKSPACCKTDGLIGWCVFARKKRCKVVCCKILGIK
                     CRFIPFFGSNMENIVKFEHEVLIVCVGRYLDYVTIRVFIKISLPGGILFLKTVGFGFV
                     WGQSRPNWSNR"
     gene            2344..3597
                     /locus_tag="WHR98_001294"
     CDS             2344..3597
                     /locus_tag="WHR98_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HEZ2307972.1"
                     /translation="MSEQHISTWKSKINALGPGIMMASAAVGGSHLIASTQAGALYGW
                     QIALIIILTNLFKYPFFRFSAHYTLDTGKSLIEGYAEKSRVYLWVFLILCIISATINA
                     GAVAIVTAAIVKMAIPSLMFDAGTVAALIMASCLIILVSGRYRALDRVSKIIIVTLSI
                     ATLAAAGIAMSRGMQMQPDFIEPTPWTLAGLGFLIALMGWMPAPIEISAINSLWVTEK
                     QRINPSEYRDGIFDFNVGYIASAVLALVFLALGAFVQYGNGEAVQMAGGKYIGQLINM
                     YAVTIGGWSRPLVAFIAFACMYGTTITVVDGYARAIAEPVRLLRGKDKTGNAEFFAWN
                     IWVAGSGLAVIFWFDGVMANLLKFAMIAAFVSAPVFAWLNYRLVKGDEKHKLTSGMNA
                     LALAGLIYLTGFTVLFLLNLAGMFK"
     gene            3603..3755
                     /locus_tag="WHR98_001295"
     CDS             3603..3755
                     /locus_tag="WHR98_001295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307973.1"
                     /translation="MPSETANRFQTALPRLWKKMPTSRKIRANFVIRSGRLKQIAPDL
                     FFRKTL"
     gene            3752..5263
                     /gene="lysS"
                     /locus_tag="WHR98_001296"
     CDS             3752..5263
                     /gene="lysS"
                     /locus_tag="WHR98_001296"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEZ2307974.1"
                     /translation="MSEQNHPQTEPQLDENQIIALRREKLHNIRQQRNAYPNDFKRDS
                     FAADLHTQYGEIGKEELDPQGIPVKIAGRMMLKRQMGKASFATIQDVSGQIQLYLNNK
                     GVSQEVLDDFNHWDLGDIVGAEGTLFKTNQGELTVRVSGIRLLSKSLRPLPDKHKGLS
                     DQETKYRQRYVDLIANEESRNTFIKRSQIIQSVRNFMVGEHYLEVETPMMHPIPGGAT
                     AKPFVTHHNALDIPLYLRIAPELYLKRLVVGGLERVFEINRSFRNEGMSVRHNPEFTM
                     IEFYEAFSDYERMMQMAEDIIRNASRAVNGTANITYNGKEVDLESPFERLTILDAIKK
                     YNPHYTDEQLNDAEWLKKEIVKHGESLPPSPGIGSLQLALFEGCAEGKLWNPTFIIDY
                     PVEVSPLARASDSKPGLTERFELFVVGRELANGYSELNDPEDQAERFKAQVAQKDAGD
                     DEAMHYDADYIRAMEFGLPPTGGCGIGIDRLVMLLTDSQTIRDVILFPQMRPE"
     gene            complement(5340..5528)
                     /locus_tag="WHR98_001297"
     CDS             complement(5340..5528)
                     /locus_tag="WHR98_001297"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEZ2307975.1"
                     /translation="MDGWYDFRFQNVVYAPDRSPEISRMLSSILAGYAWDTENPFVAK
                     SEQRLTALSEWVGQLESE"
     gene            complement(5532..6409)
                     /locus_tag="WHR98_001298"
                     /pseudo
     CDS             complement(5532..6409)
                     /locus_tag="WHR98_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245633.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF723 domain-containing protein"
     gene            complement(6439..7566)
                     /locus_tag="WHR98_001299"
     CDS             complement(6439..7566)
                     /locus_tag="WHR98_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEZ2307976.1"
                     /translation="MSNWKPNIPYNDLPPLPPKQDIESKTILKRCITARASLARLKQA
                     AELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQYRT
                     ALFAGYESLTSRPLCTQTAIMVCNAIKHPYEMAIRKTGGTALKGGNSGNVVYTPPEGE
                     ETIRGKLANWERFIHESGDLDPLIIMAAAHYQFEAIHPFTDGNGRTGRILNSLLLIEK
                     GLLDLPILYLSRYIIENRADYYRLLLGVTERQDWESWIIYILDGVADTADWTVSKIDA
                     IRRLFEQTRQHIRTHAQGIYTHELVNLLFEQPYTRIANLEAAGIAKRQTASKYLKELS
                     DIGVLQEIVIGRDKLFIHPRLMELLRGEGNSFTSFQSLVKA"
BASE COUNT         1705 a         1986 c         2198 g         1957 t
ORIGIN      
        1 cttgcggcaa gatgaaaacg gtgcgggatg ttttgggaaa ccaatgccgt ctgaagggct
       61 ttcagacggc attttttgcg ccgtgctgtt taacgcgcca gcggttcggt gcgtttgatc
      121 agccacgctt ttgccgcgcc ttcggtcagc ggctcgaggc ggcggcggac ttcggcgtgg
      181 tagcggttga cccagtcgat ttcgccgtcg gtcatgaggg cggtgtctat caggcgggtg
      241 tcgatggggc agagggtcag ggtttcaaaa cagaggaagc tgccgaattc ggtttcttga
      301 ggggcggcga cggcttggtt ggcggcaagg ttttcaatgc ggatgcccca ttttcccggg
      361 cggtagagtc cgggttcgat ggaggtaacc atgccttttt tcatggcggt ttcgggcgtg
      421 gcgggggcgg cgaaggcgat gcgctgcggg ccttcgtgga cgttgaggaa atagcctacg
      481 ccgtgtccgg tgccgtggcc gtagtcgcat tgcgcctgcc acaggggttt gcggcaaatc
      541 gcatcaatca gcggcgaggg gatgttttct gggaacacgg cttcggcaag cgcgatatgg
      601 gctttgagaa cgagggtgtt gtcgcgtttt tgttcggcgg tgggtgtgcc gacggggacg
      661 acgcgggtga tgtcggtcgt gccgcctttg tattgcgcgc cggagtcgat gagcaaaagc
      721 ccgttgccgc tgatggtgct gtggctttcg ggtgtcgcgc tgtaatgcgg cagtgcgccg
      781 ttggcgttga agcctgcgat ggtgtcgaaa ctcaatgaaa tgaagcctgg gcgcacgctg
      841 cggtggcgat aaagcatggt gtccacgtcg atttcggtca ggctgccgcc gttgccgatg
      901 atgtcttcaa actcggcgaa gaaaccgcac aacgccgcgc cgtcgtgttc catcgcttcg
      961 cggatgcggg cgatgtcggc ttcggatttg caggatttga acagcgtgga cgggttgatt
     1021 ccctcgataa ggcacacgct ttcgggcagg cgcacaagcg tgctgacggc ggttttgttc
     1081 ggttcgataa gcaacgcgcc gccgatttgc gcgagtttgt cggcaacttg ggcgtaaggc
     1141 tcgaccgtga tgcctgcggt ttgcagcgcg gcggcggctt cggcattcag acggcatcgg
     1201 tcggtaaaca ggacggcgtt gtctttgcca atcaatagat aggacacgaa aacgggattg
     1261 aaaggcacgt cgctgccgcg caggttggtc agccaagcga tgtcgtcaag cgaggaaacc
     1321 aagtggtaat ccgcgccttt ttccgccatg acggcgcgca cgcgggcgag tttttcggcg
     1381 gcggtttcgg agacgtaggc ggggtcgtgg atgaacacgg tttcggcggg gatagcggga
     1441 cggcttgtcc acacttggtc aagcagatcg tccgggtgtt cgatgcggat gtttttggcg
     1501 gtcagggatt gcgccaaagt gcgtttgccg gtgagcgaga ccatatcgga agggatgccg
     1561 acggcggcgt tttcgggcag gtttgccgcg agccattcgt tatacggcgg cacttgcccg
     1621 cttttttgca gttcgatgcc gctgcccgca agctgcttgg cggcttgttc ccaatagcgg
     1681 ctgtccaccc atacgcccgc ttcatcggtg gtcaggacaa acgtgccgac cgagccggta
     1741 aagcccgata attcgcggcg cgcctgccaa tgctcgggca ggtattcgga caggtggggg
     1801 tcggcggaag ggatgacgag cgcgtccaag ccttgcgcct tcatggcttc gcgcaatgcg
     1861 gacaggtaat tcgatacggt attcataaca gttcctccaa tcgggttttg cggcttcaga
     1921 cggcatggac ggaaatctga aatgccgtct gaaaaacata accatcttat caaatcgcca
     1981 gcctgctgca aaacggacgg gctgatcgga tggtgcgtgt ttgcgcgaaa aaagcgatgt
     2041 aaggttgttt gttgtaaaat tttaggcata aaatgtcgtt ttataccttt ttttggaagt
     2101 aatatggaaa atatagtcaa gtttgagcat gaagttctaa tagtgtgtgt tggcaggtat
     2161 ttggattacg ttacaatacg tgttttcatc aaaatttccc taccgggcgg tatcctgttt
     2221 ttgaagacgg taggatttgg gtttgtttgg gggcaatccc gcccaaattg gagcaataga
     2281 tagggctgtg tccgaatatg cggctctgtg tgttgaaaca cagttaaaaa tacggaagac
     2341 tttatgtccg aacaacatat ttcgacttgg aaaagtaaaa tcaacgcatt gggtccgggg
     2401 atcatgatgg cttcggcggc ggtcggcggt tcgcacctga ttgcctcgac gcaggcgggc
     2461 gcgctttacg gctggcagat cgcgctcatc atcatcctga ccaacctctt caaatacccg
     2521 tttttccgct tcagcgcgca ttacacgctg gacacgggca agagcctgat tgaaggttat
     2581 gccgagaaaa gccgtgttta tttgtgggtt ttcctgattt tgtgcatcat ttccgccacg
     2641 attaacgctg gcgcggtcgc catcgtaacc gccgccatcg tcaaaatggc gattccctcg
     2701 ctgatgtttg atgccggcac ggttgccgcc ttgattatgg catcctgcct gattattttg
     2761 gtgagcggac gttaccgcgc tttggatcgc gtttccaaaa tcatcatcgt tactttgagt
     2821 atcgccacgc ttgccgccgc cggcatcgct atgtcgcgcg gtatgcagat gcagcccgat
     2881 tttatcgagc cgacaccgtg gacgcttgcc ggtttgggct tcctgatcgc gctgatgggc
     2941 tggatgcccg cgccgattga aatttccgcc atcaattctt tgtgggtaac cgaaaaacaa
     3001 cgcatcaatc cttccgaata ccgcgacggg atttttgatt tcaacgtcgg ttatatcgcc
     3061 agtgcggttt tggctttggt tttccttgca ctgggtgcgt ttgtgcaata cggcaacggc
     3121 gaagcagtgc agatggcggg cggcaaatat atcgggcaat tgatcaatat gtacgccgtt
     3181 accatcggcg gctggtcgcg cccgctggtg gcgtttatcg cttttgcctg tatgtacggc
     3241 acgacgatta ccgttgtgga cggctatgcc cgtgccattg ccgaacccgt gcgcctgctg
     3301 cgcggaaaag acaaaacggg caacgccgaa ttctttgcct ggaatatttg ggtggcgggc
     3361 agcggtttgg cggtgatttt ttggtttgac ggcgtaatgg cgaatctgct caaatttgcg
     3421 atgattgccg cttttgtgtc cgcccccgtg ttcgcttggc tgaattaccg tttggtcaaa
     3481 ggtgatgaaa aacacaaact cacatcaggt atgaatgccc ttgcattggc aggcttgatt
     3541 tatctgaccg gttttaccgt tttgttctta ttgaatttgg cgggaatgtt caaatgataa
     3601 cgatgccgtc tgaaaccgca aaccgctttc agacggcatt gccgcgttta tggaaaaaaa
     3661 tgccgacatc gcgtaaaata cgcgcaaatt ttgtgattcg gtcaggtcgt ctgaaacaga
     3721 ttgcgcctga tttatttttt cggaaaaccc tatgagcgaa caaaaccatc cgcaaaccga
     3781 gccgcagttg gacgaaaacc aaatcatcgc cctgcgccgc gaaaaactgc acaacatccg
     3841 ccaacagcgc aacgcctacc ctaacgattt caaacgcgac agctttgccg ccgacctgca
     3901 tacccaatac ggtgaaatcg gcaaagaaga actcgacccg caaggcattc ccgtcaaaat
     3961 tgccggccgc atgatgctca aacggcaaat gggcaaggcg agctttgcca ctattcaaga
     4021 cgtgtccggg caaatccagc tttatctgaa caacaaaggc gtgagccaag aagttttgga
     4081 cgacttcaac cattgggatt tgggcgacat cgtcggcgcg gaaggcactt tgttcaaaac
     4141 caaccagggc gaactgaccg tacgcgtgtc cggcatccgc ctgctgtcca aatccctgcg
     4201 ccctctgccg gacaaacata aaggcttgag cgatcaggaa accaaatacc gccaacgcta
     4261 tgtcgatttg attgccaacg aagaatcgcg caataccttt atcaaacgca gccaaatcat
     4321 ccaatccgtg cgtaatttta tggtgggcga gcattatctc gaagtcgaaa ccccgatgat
     4381 gcacccgatt cccggcggcg cgacggcaaa acccttcgtt acccaccaca atgccttgga
     4441 cattccgctc tacctgcgca tcgcccccga gctgtatctg aaacgcttgg ttgtcggcgg
     4501 tttggaacgc gtgtttgaaa tcaaccgcag cttccgcaac gaaggtatgt ctgtgcgcca
     4561 taaccctgaa ttcaccatga tcgaattcta cgaagccttc tccgactacg aacgcatgat
     4621 gcaaatggcg gaagacatca tccgcaacgc ttcccgcgcg gtaaacggca cggcaaacat
     4681 cacttacaac ggcaaagaag tcgatttgga aagcccgttc gagcgtctga ccattctcga
     4741 tgccatcaaa aaatacaatc cgcactacac cgacgagcag ttgaacgatg cggagtggct
     4801 gaaaaaagaa atcgtcaaac acggcgaaag cctgcctccg tctccgggca tcggcagcct
     4861 gcaacttgcc ctgtttgaag gttgcgccga gggcaaattg tggaacccga ctttcattat
     4921 cgactaccct gtcgaagtgt ccccgttggc acgcgcatcc gacagcaaac cgggcttgac
     4981 cgaacgcttc gagcttttcg ttgtcggccg cgaactggca aacggctact ccgagttgaa
     5041 cgatccggaa gaccaagccg aacgcttcaa ggcacaagtg gcgcaaaaag acgcgggcga
     5101 cgacgaagcg atgcactacg atgccgacta catccgcgcg atggaattcg gcctgccgcc
     5161 gaccggcggc tgcggcatcg gcatcgaccg cttggtcatg ttgctgaccg attcgcaaac
     5221 catccgcgac gtgattctgt ttccgcagat gcgccccgag tagtcataaa aacagttgaa
     5281 atggcaatgc cgtctgaacc cgattggatt cagacggcat tttgtatggc ggtacggatt
     5341 tattcgcttt ctaactgacc gacccattcg gacaaggcag tcaggcgttg ttcggatttc
     5401 gccacgaacg ggttttcggt atcccacgcg tagcctgcca aaatcgaaga aagcatacgg
     5461 ctgatttccg ggctgcggtc gggcgcgtac acgacgtttt ggaagcggaa atcgtaccaa
     5521 ccgtccacac atcaggggtg gtaatccgaa tcaacacgcc ttcttgcctg tgcggcggac
     5581 ataaaccgtt ttttgactcc agcaccacac ctaaaatcgt gctgccttcg ggcaggtcaa
     5641 aggcttcaga cggcctgccc gtctgataaa tcagcatcct gcccgcaata tcgataacaa
     5701 ggtgcgcgac gaccagccgc ttgtcggaca gttcaatcag cgcgatgtct tcgtccgcag
     5761 ggcacatacg cggctcgacc accagcaagt ctcccttttc gataaccggc gacatggacg
     5821 tgtcgggcat ggcaacggca aacgtgtact gcgagggggc gaccaccgaa gcaaacaggt
     5881 cgaaactgcc cgtgagtttg cctgtacggg cgaaagccgc cgcctgacgg tctgacaaca
     5941 aaggacgggg tgtgagcctc atcgacagtg ctttgccatc ggcatcgctg tggttgtgcg
     6001 tatgcgtatg atggttgttg atggtcgtat cgccttggac atcgttaagg actatgctgt
     6061 ttgaacctgc cacggatttg gtcatctcat tgtaggcttg cgtcgtgatg cgctcttgct
     6121 tggtcatacc tgttacagcc tgtttcagca tttctaacgc tatgtgattc ttcctaaggg
     6181 tcgctatacc ggcttttgca gcttgctcat taccacaaga ggggcaaccc cagctacttc
     6241 ctatgaacat attggagtac ctcgaacagg tttggtttcc atgtttaggg cagttgatta
     6301 cacacggctt ggctgtaccc tcaaactcga ccaacttaat gccacgatga ccgaaacgtt
     6361 cctcaacctc agcagcagct tcttcaaatg tttttgacct tcttgccata ttgacctccg
     6421 gattattgat tattttggct atgctttaac gagggattgg aatgaggtaa agctgttgcc
     6481 ctctccccgc aatagttcca ttaggcgcgg atgaatgaat agtttgtccc tgccgatgac
     6541 gatttcttgc agcacaccta tgtctgaaag ctctttcagg tacttagagg ccgtctgccg
     6601 tttggctatc cctgccgctt ctaggttggc aatgcgtgta tatggctgct caaacagaag
     6661 atttaccagt tcgtgcgtgt agattccttg tgcgtgtgtc cgtatgtgtt gccgtgtctg
     6721 ctcgaacagg cggcgtatcg catctatttt cgataccgtc caatcggcgg tgtcggctac
     6781 gccgtctaag atgtagatta tccagctttc ccagtcctgc cgttcggtta cgcctaaaag
     6841 caggcggtaa tagtccgccc tgttttcgat gatgtagcgg ctcaaataca aaataggcaa
     6901 atccaaaagc cctttttcaa tcaatagcag gctgttcaat atgcgccccg tccgcccgtt
     6961 gccgtccgta aacggatgga tggcttcaaa ttggtaatgt gccgccgcca tgatgataag
     7021 cgggtctaaa tcgccgcttt cgtgaataaa ccgctcccaa tttgccagct tgccgcgtat
     7081 ggtttcttct ccttcgggcg gggtatagac aacatttccg ctgttgcctc cttttagggc
     7141 tgtgccgcct gttttgcgga tggccatttc gtaggggtgc ttgatggcgt tgcagaccat
     7201 gatggcggtt tgtgtgcata aagggcggct cgtcagtgat tcatagcctg caaacagggc
     7261 ggtgcggtat tgcagggctt ctttcgtggc agggtcttgc cgttccgtat ccatttgcag
     7321 ggattgaaac agcttatccg ttgtggttac gatgttttca atttccgaac ttgcacgggc
     7381 ttccataaca ggaagggtgt taatcagcat ggcttgattc ggtatcagtt ctgccgcctg
     7441 ctttaaacgg gcaagggatg cacgggcggt tatacaacgt ttcaggatgg ttttgctttc
     7501 aatatcctgt tttggcggca ggggtggtaa atcgttatag ggaatattgg gtttccagtt
     7561 gctcatattt aaaatttcgg aaaatttaaa gatgtttcca gtatatgttt acgccgtgta
     7621 tatatcaagg atatatgttt aaaaatttgg cttttgtaaa tatatgggcg gtaaaaccgc
     7681 attattttat gttgttacct attttacacc ttgtctgcac acgatttcca aacaacctaa
     7741 aaagaaacct gccgaaaggc aggtttaaag aggtcatttt aaatgtgaac taaagcttac
     7801 accctcgtag ggtatcgtgt atatcagacg tacttaatat acacta
//
LOCUS       DAWGNT010000088         7743 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.088, whole genome shotgun sequence.
ACCESSION   DAWGNT010000088 DAWGNT010000000
VERSION     DAWGNT010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7743
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.088"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(111..1457)
                     /gene="mnmE"
                     /locus_tag="WHR98_001300"
     CDS             complement(111..1457)
                     /gene="mnmE"
                     /locus_tag="WHR98_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEZ2307977.1"
                     /translation="MSDNVPTIAAVATASGRGGVGVIRISGKNLLPMAEALCGKTPKP
                     RVATYADFTDADGQAIDSGLLLFFAAPASFTGEDVIELQGHGGPVVMDMLLNRCLELG
                     ARLAEPGEFTKRAFLNDKLDLAQAEGVADLIDASSRSAARLALRSLKGDFSRRIHGLV
                     EDLITLRMLVEATLDFPEEDIDFLEAADARGKLDGLRRAVDDVLANAQQGAILREGLN
                     VVLVGAPNVGKSSLLNALAGDEVAIVTDIAGTTRDAVRERILIDGVPVHIVDTAGLRE
                     TDDVVERIGIERSRKAVSEADVALVLVDPREGLNEKTRAILDALPPELKRIEIHSKSD
                     LHAHAAGGFGTGAETVIALSAKTGDGLDALKRTLLREAGWQGEGEGLFLARTRHVNAL
                     KAAQEELSLAALCGNHQIELFAEHLRLAQVACGEITGEFTADDLLGVIFSRFCIGK"
     gene            1588..1743
                     /locus_tag="WHR98_001301"
     CDS             1588..1743
                     /locus_tag="WHR98_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307978.1"
                     /translation="MEKRNTYALLLGIGSLLGLFHPTKTAIRPNPADDLKNIGGDFQR
                     AIEKARK"
     gene            1740..2171
                     /locus_tag="WHR98_001302"
     CDS             1740..2171
                     /locus_tag="WHR98_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2335 domain-containing protein"
                     /protein_id="HEZ2307979.1"
                     /translation="MTENAQDKARQAVETVVKSPELVEQILSDEYVQIMIARRFHSGP
                     LPPPSDLAQYNDIISNGADRIMAMAEKEQAVRHETIRQDQTFNRRGQLYGFISVILIL
                     LFAVFLVWSGYPATAASLAGGTVVALAGAFVIGRSRDQGKN"
     gene            2305..6648
                     /gene="app"
                     /locus_tag="WHR98_001303"
     CDS             2305..6648
                     /gene="app"
                     /locus_tag="WHR98_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesion and penetration autotransporter App"
                     /protein_id="HEZ2307980.1"
                     /translation="MKTTDKRTTETHRKAPKTGRIRFSPAYLAICLSFGILPQAWAGH
                     TYFGINYQYYRDFAENKGKFAVGAKDIEVYNKKGELVGKSMTKAPMIDFSVVSRNGVA
                     ALVGDQYIVSVAHNGGYNNVDFGAEGSNPDQHRFSYQIVKRNNYKPDNSHPYNGDYHM
                     PRLHKFVTDAEPVEMTSDMRGNTYSDKEKYPERVRIGSGHHYWRYDDDKHGDLSYSGA
                     WLIGGNTHMQGWGNNGVVSLSGDVRHANDYGPMPIAGAAGDSGSPMFIYDKTNNKWLL
                     NGVLQTGYPYSGRENGFQLIRKDWFYDDIYRGDTHTVFFEPRSNGHFSFTSNNNGTGT
                     VTETNEKVSNPKLKVQTVRLFDESLNETDKEPVYAAGGVNQYRPRLNNGENLSFIDYG
                     NGKLILSNNINQGAGGLYFEGDFTVSPENNETWQGAGVHISEDSTVTWKVNGVANDRL
                     SKIGKGTLHVQAKGENQGSISVGDGKVILDQQADENNKKQAFSEIGLVSGRGTVQLNA
                     DNQFNPDKLYFGFRGGRLDLNGHSLSFHRIQNTDEGAMIVNHNQDKESTVTITGNKDI
                     ATTGNNNSLDSKKEIAYNGWFGEKDTTKTNGRLNLVYQPAAEDRTLLLSGGTNLNGNI
                     TQTNGKLFFSGRPTPHAYNHLGSGWSKMEGIPQGEIVWDNDWINRTFKAENFHIQGGQ
                     AVISRNVAKVEGDWHLSNHAQAVFGVAPHQSHTICTRSDWTGLTNCVEKTITDDKVIA
                     SLTKTDISGNVSLADHAHLNLTGLATLNGNLSANGDTRYTVSHNATQNGNLSLVGNAQ
                     ATFNQATLNGNTSASGNASFNLSNNAAQNGSLTLSDNAKANVSHSALNGNVSLADKAV
                     FHFENSRFTGQLSGSKDTALHLKDSEWTLPLGTELGNLNLDNATITLNSAYRHDAAGA
                     QTGSVSDTPRRRSRRSLLSVTPPTSVESRFNTLTVNGKLNGQGIFRFMSELFGYRSDK
                     LKLAESSEGTYTLAVNNTGNEPVSLDQLTVVEGKDNKPLSENLNFTLQNEHVDAGAWR
                     YQLIRKDGEFRLHNPVKEQELSDKLGKAEAKKQAEKDNAQSLDALIAAGRDAAEKTES
                     VAEPARQAGGENVGIMQAEEEKKRVQADKDSALAKQREAETRPATTAFPRARRARRDL
                     PQPQPQPQPQPQPQRDLISRYANSGLSEFSATLNSVFAVQDELDRVFAEDRRNAVWTS
                     GIRDTKHYRSQDFRAYRQQTDLRQIGMQKNLGSGRVGILFSHNRTENTFDDGIGNSAR
                     LAHGAVFGQYGIGRFDIGISTGAGFSSGSLSDGIGSKIRRRVLHYGIQARYRAGFGGF
                     GIEPHIGATRYFVQKADYRYENVNIATPGLAFNRYRAGIKADYSFKPAQHISITPYLS
                     LSYTDAASGKVRTRVNTAVLAQDFGKTRSAEWGVNAEIKGFTLSLHAAAAKGPQLEAQ
                     HSAGIKLGYRW"
     gene            complement(6757..7479)
                     /locus_tag="WHR98_001304"
     CDS             complement(6757..7479)
                     /locus_tag="WHR98_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEZ2307981.1"
                     /translation="MFPDKYKLSLKENIFLAKKVLVAQIHNLSRFENCQTTLLQTEQI
                     IHGKNVASASLEDIQTILNLKRAYQYVISHISNGEPVDISLLKKINNIVAKDDSLAPG
                     DFRTGSVGVTLLDGSRHAPNPVKEIEVARVLQNIGLQSGSTTEAAVRFMLYCMRQQVF
                     WDGNKRTATLFANGLMMAGGCGILEISEMQMPQFNEKLSAFYRSGDDTDISKFVYQNC
                     ISGIDYFGTDEDIDFPDPPNMG"
BASE COUNT         2049 a         2196 c         1877 g         1621 t
ORIGIN      
        1 gccttgtcct gatttttgtt aatccactat aaaaccaaac ggatcggatt cccgttttta
       61 tgggataacg gaatgttcag ccggacaccg ccacgatgct ttcgatccgt ttattttccg
      121 atacaaaacc tcgaaaaaat cacgccgagc aggtcgtccg ccgtaaactc gcccgtgatt
      181 tcgccgcatg cgacctgcgc caagcgcaag tgttcggcaa acagctcgat ttgatggttg
      241 ccgcacaatg ccgccagcga caattcttcc tgcgctgctt tgagtgcgtt gacgtgccgc
      301 gtccgcgcca aaaacagccc ttcgccctcg ccctgccatc cggcctcgcg caacaacgtc
      361 cgtttcagcg cgtccaagcc gtcgccggtt ttcgccgaca gcgcgatgac ggtttctgcg
      421 cccgtaccga acccgcctgc cgcgtgtgcg tgcaaatcgg atttgctgtg gatttcgatg
      481 cgtttcaact ccggcggcaa cgcgtccaaa atcgcccgtg tcttttcatt caaaccctcg
      541 cgcggatcga ccaacaccag cgcgacatcg gcttcggata cggctttgcg gctgcgttcg
      601 atgccgatac gctcgaccac gtcgtccgtc tcgcgcaaac ctgccgtatc gacaatatgc
      661 accggcacgc cgtcaatcag gatacgttcc ctgaccgcgt cgcgcgtcgt tccggcaata
      721 tcggtaacaa tcgccacttc gtcgccagcc aacgcgttca gcaggctgga cttgcccaca
      781 ttcggcgcgc cgaccaatac gacattcaga ccttcgcgca aaatcgcgcc ctgctgcgcg
      841 ttggcaagca catcatccac ggcgcggcgc aagccgtcca gtttgccgcg tgcgtccgcc
      901 gcttcgagaa aatcaatgtc ttcctcggga aaatccagcg tcgcttcgac cagcatccgc
      961 aaggtaatca aatcttcgac cagaccgtgt atccgccgcg aaaaatcgcc cttgagcgag
     1021 cgcaacgcca gacgcgccgc cgaacggctg gatgcgtcaa tcaaatccgc cacgccttcc
     1081 gcctgtgcca agtccagttt gtcgtttaaa aacgcacgtt tggtaaactc gcccggttcg
     1141 gcaaggcgcg cgcccaactc caaacagcgg ttcagcagca tatccatcac caccggcccg
     1201 ccgtgtccct gaagctcgat gacatcttca cccgtaaaac ttgccggtgc ggcaaaaaac
     1261 agtagcagcc cgctgtcgat tgcctgaccg tccgcgtccg taaaatcagc ataggttgcc
     1321 acgcgcggct tgggcgtttt accgcacaaa gcctctgcca tcggcagcag gtttttcccc
     1381 gatatgcgta tcacgcccac gccgccgcgc cctgatgcgg tagcgactgc cgcaatcgtt
     1441 ggaacgttat ccgacataaa acccccgaaa attcaaaaca gccgcgatta tagcaaatgc
     1501 cgtctgaagt ccgacggttt ggctttcaga cggcataaaa ccgcaaaaac gcttgataaa
     1561 tccgtccgcc tgacctaata taaccatatg gaaaaacgaa acacatacgc cctcctgctc
     1621 ggtataggct cgctgttggg cctgtttcat cccacaaaaa ccgccatccg ccccaatccc
     1681 gccgacgatc tcaaaaacat cggcggcgat tttcaacgcg ccatagagaa agcgcgtaaa
     1741 tgaccgaaaa cgcacaggac aaggcgcggc aggctgtcga aaccgtcgtc aaatccccgg
     1801 agcttgtcga gcaaatcctg tccgacgagt acgtgcaaat aatgatagcc cggcgtttcc
     1861 attcgggacc gttgccgccg ccgtccgact tggcgcaata caacgacatt atcagcaacg
     1921 gggcagaccg cattatggca atggcggaaa aagaacaagc cgtccggcac gaaaccatac
     1981 ggcaagacca aaccttcaac aggcgcgggc aactgtacgg cttcatcagc gtcatcctga
     2041 tactgctttt tgccgtcttc ctcgtatgga gcggctaccc cgcaaccgcc gcctcccttg
     2101 ccggcggcac agtggttgcc ttggcgggtg ctttcgtgat tggaagaagc cgagaccaag
     2161 gcaaaaatta atgacaaatc ctagggcgtg cttcatatcc gcccgaacgc cgaaccgcac
     2221 atataggcac atcccgcgcg ccgcccggaa gcggaagccg cgccctccca aacaaacccg
     2281 aatcccgtca gataaggaaa aataatgaaa acaaccgaca aacggacaac cgaaacacac
     2341 cgcaaagccc cgaaaaccgg tcgcatccgc ttctcgcctg cttacttagc catatgcctg
     2401 tcgttcggca ttcttcccca agcctgggcg ggacacactt atttcggcat caactaccaa
     2461 tactatcgcg actttgccga aaataaaggc aagtttgcag tcggggcgaa agatattgag
     2521 gtttacaaca aaaaagggga gttggtcggc aaatcaatga caaaagcccc gatgattgat
     2581 ttttctgtgg tgtcgcgtaa cggcgtggcg gcattggtgg gcgatcaata tattgtgagc
     2641 gtggcacata acggcggcta taacaacgtt gattttggtg cggagggaag caatcccgat
     2701 cagcaccgct tttcttacca aattgtgaaa agaaataatt ataagcctga caattcacac
     2761 ccttacaacg gcgattacca tatgccgcgt ttgcataaat ttgtcacaga tgcagaacct
     2821 gtcgaaatga cgagtgacat gagggggaat acctattccg ataaagaaaa atatcccgag
     2881 cgtgtccgca tcggctcagg acaccactat tggcgttatg atgatgacaa acacggcgat
     2941 ttatcctact ccggcgcatg gttaattggc ggcaatacac atatgcaggg ttggggaaat
     3001 aatggcgtag ttagtttgag cggcgatgtg cgccatgcca acgactatgg ccctatgccg
     3061 attgcaggtg cggcaggcga cagcggttcg ccaatgttta tttatgacaa aacaaacaat
     3121 aaatggctgc tcaacggagt tttacaaacc ggctaccctt attccggcag ggaaaacggt
     3181 ttccagctga tacgcaaaga ttggttctac gatgacattt acagaggcga tacacatacc
     3241 gtcttttttg aaccgcgcag taacggacat ttttccttta catccaacaa caacggtacg
     3301 ggtacggtaa cagaaaccaa cgaaaaggtt tccaatccaa agcttaaagt acagacagtc
     3361 cgactgtttg acgaatcttt gaatgaaact gataaagaac cagtttacgc ggcagggggt
     3421 gttaatcagt accgtccaag gttaaacaac ggtgaaaacc tttcttttat cgattacggc
     3481 aacggcaaac tcatcttatc aaacaacatc aaccaaggcg cgggcggttt gtattttgaa
     3541 ggtgatttta cggtctcgcc tgaaaacaac gaaacgtggc aaggcgcggg cgttcatatc
     3601 agtgaagaca gtaccgttac ttggaaagta aacggcgtgg caaacgaccg cctgtccaaa
     3661 atcggcaaag gcacgctgca cgttcaagcc aaaggggaaa accaaggctc gatcagcgtg
     3721 ggcgacggta aagttatttt agatcaacaa gcagatgaaa ataataaaaa acaagccttt
     3781 agtgaaatcg gcttggtcag cggcaggggt acggtgcaac tgaatgccga taatcagttc
     3841 aaccccgaca aactctattt cggctttcgc ggcggacgtt tggatttgaa cgggcattcg
     3901 ctttcgttcc accgtattca aaataccgat gaaggggcga tgattgtcaa ccacaatcaa
     3961 gacaaagaat ccaccgttac cattacaggc aataaagata ttgctacaac cggcaataac
     4021 aacagcttgg atagcaaaaa agaaattgcc tacaacggtt ggtttggcga gaaagatacg
     4081 accaaaacga acgggcggct caaccttgtt taccagcccg ccgcagaaga ccgcaccctg
     4141 ctgctttccg gcggaacaaa tttaaacggc aacatcaccc aaacaaacgg caaactgttt
     4201 ttcagcggca gaccgacacc gcacgcctac aatcatttag gaagcgggtg gtcaaaaatg
     4261 gaaggtatcc cacaaggaga aatcgtgtgg gacaacgact ggatcaaccg cacgtttaaa
     4321 gcggaaaatt tccatattca gggcgggcag gcggtgattt cccgcaatgt tgccaaagtg
     4381 gaaggcgatt ggcatttgag caatcacgcc caagcagttt ttggtgtcgc accgcatcaa
     4441 agccatacaa tctgtacacg ttcggactgg acgggtctga caaattgtgt cgaaaaaacc
     4501 attaccgacg ataaagtgat tgcttcattg actaagaccg acatcagcgg caatgtcagc
     4561 cttgccgatc acgctcattt aaatctcaca gggcttgcca cactcaacgg caatcttagt
     4621 gcaaatggcg atacacgtta tacagtcagc cacaacgcca cccaaaacgg caaccttagc
     4681 ctcgtgggca atgcccaagc aacatttaat caagccacat taaacggcaa cacatcggct
     4741 tcgggcaatg cttcatttaa tctaagcaac aacgccgcac aaaacggcag tctgacgctt
     4801 tccgacaacg ctaaggcaaa cgtaagccat tccgcactca acggcaatgt ctccctagcc
     4861 gataaggcag tattccattt tgaaaacagc cgctttaccg gacaactcag cggcagcaag
     4921 gatacagcat tacacttaaa agacagcgaa tggacgctgc cgttaggcac ggaattaggc
     4981 aatttaaacc ttgacaacgc caccattaca ctcaattccg cctatcgcca cgatgctgca
     5041 ggcgcgcaaa ccggcagtgt gtcagacacg ccgcgccgcc gttcgcgccg ttccctatta
     5101 tccgttacac cgccaacttc ggtagaatcc cgtttcaaca cgctgacggt aaacggcaaa
     5161 ttgaacggtc aaggaatatt ccgctttatg tcggaactct tcggctaccg aagcgacaaa
     5221 ttgaagctgg cggaaagttc cgaaggcact tacaccttgg cggtcaacaa taccggcaac
     5281 gaacccgtaa gcctcgatca attgacggta gtggaaggga aagacaacaa accgctgtcc
     5341 gaaaacctta atttcaccct gcaaaacgaa cacgtcgatg ccggcgcgtg gcgttaccaa
     5401 ctcatccgca aagacggcga gttccgcctg cataatccgg tcaaagaaca agagctttcc
     5461 gacaaactcg gcaaggcaga agccaaaaaa caggcggaaa aagacaacgc gcaaagcctt
     5521 gacgcgctga ttgcggccgg gcgcgatgcc gccgaaaaga cagaaagcgt tgccgaaccg
     5581 gcccggcagg caggcgggga aaatgtcggc attatgcagg cggaggaaga gaaaaaacgg
     5641 gtgcaggcgg ataaagacag cgccttggcg aaacagcgcg aagcggaaac ccggccggct
     5701 accaccgcct tcccccgcgc ccgccgcgcc cgccgggatt tgccgcaacc gcagccccaa
     5761 ccgcaacctc aaccccaacc gcagcgcgac ctgatcagcc gttatgccaa tagcggtttg
     5821 agtgaatttt ccgccacgct caacagcgtt ttcgccgtac aggacgaatt ggaccgcgtg
     5881 tttgccgaag accgccgcaa cgccgtttgg acaagcggca tccgggacac caaacactac
     5941 cgttcgcaag atttccgcgc ctaccgccaa caaaccgacc tgcgccaaat cggtatgcag
     6001 aaaaacctcg gcagcgggcg cgtcggcatc ctgttttcgc acaaccggac cgaaaacacc
     6061 ttcgacgacg gcatcggcaa ctcggcacgg cttgcccacg gcgccgtttt cgggcaatac
     6121 ggcatcggca ggttcgacat cggcatcagc acgggcgcgg gttttagcag cggcagtctt
     6181 tcagacggca tcggaagcaa aatccgccgc cgcgtgctgc attacggcat tcaggcacga
     6241 taccgcgccg gtttcggcgg attcggcatc gaaccgcaca tcggcgcaac gcgctatttc
     6301 gtccaaaaag cggattaccg ctacgaaaac gtcaatatcg ccacccccgg ccttgcgttc
     6361 aaccgctacc gcgcgggcat taaggcagat tattcattca aaccggcgca acacatttcc
     6421 atcacgcctt atttgagcct gtcctatacc gatgccgctt cgggcaaagt ccgaacacgc
     6481 gtcaataccg ccgtattggc tcaggatttc ggcaaaaccc gcagtgcgga atggggcgta
     6541 aacgccgaaa tcaaaggttt cacgctgtcc ctccacgctg ccgccgccaa aggcccgcaa
     6601 ctggaagcgc aacacagcgc gggcatcaaa ttaggctacc gctggtaaca ccggatatgc
     6661 cgaaaggggt ttgacgatgc cgccgtgcgc tgtcaaaccc tttttctgcc gccgccttgt
     6721 gcctgctcca ttgtctgata accgtcaaat tgatttttag cccatgtttg gtgggtcggg
     6781 gaaatctata tcttcgtccg tgccgaaata gtctatgccc gatatacaat tttgatacac
     6841 aaacttggaa atatcggtat cgtcgccgga gcgatagaat gcggacagtt tttcattgaa
     6901 ttgcggcatc tgcatttcgg agatttccaa gatgccgcag ccccccgcca tcatcagacc
     6961 gttggcaaat aaggttgccg ttcgtttgtt gccgtcccaa aaaacctgct gccgcataca
     7021 ataaagcata aaacggacgg ctgcctccgt cgtcgaaccg ctttgcagtc cgatattttg
     7081 taacacgcgg gccacttcaa tttccttcac tggattcggg gcatgacggg aaccgtccaa
     7141 tagcgttacg ccgaccgaac cggtacggaa atcaccgggt gccaaagaat cgtccttggc
     7201 aacaatgttg ttgatttttt taaggagtga aatatcgacc ggttcgccgt ttgaaatatg
     7261 cgaaatcaca tattgatagg cacgtttcag gttcaagatg gtttggatgt cttccagtga
     7321 cgcggaggct acatttttgc catggataat ttgttcggtc tgcaataagg tcgtctgaca
     7381 attctcaaaa cggctgaggt tgtgaatttg ggcaaccaat actttctttg ccaaaaaaat
     7441 attttctttc aaactcaact tgtatttgtc gggaaacacg ataattcctt aaataattaa
     7501 agcagtacgt taaatcatca tcttatcatc actttcgggg tttatgttgc atgcgtccgt
     7561 tttctaatac ggtttcccat cccgcgaaac gaggcggaga cctgtgcaaa aaacctgttc
     7621 acgaaatttt ccgcattaac gatacgctga aaatgcgcta aaaatgactg tgtttgaata
     7681 tcggttgatt tcatccgttt gtgtaacctc gcgccggttt tgtcatgatt ttgcattata
     7741 gtg
//
LOCUS       DAWGNT010000089         7736 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.089, whole genome shotgun sequence.
ACCESSION   DAWGNT010000089 DAWGNT010000000
VERSION     DAWGNT010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7736
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.089"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            1..96
                     /locus_tag="WHR98_001305"
                     /pseudo
     CDS             1..96
                     /locus_tag="WHR98_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
     gene            502..1557
                     /locus_tag="WHR98_001306"
     CDS             502..1557
                     /locus_tag="WHR98_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HEZ2307982.1"
                     /translation="MKNSKLKAVDFFCGGGGMSYGMQSAGIQVLAGIDYEPSCKETYE
                     ANINAKFIQADVFELQPETLEKELGLKKNDDDLILIGCSPCQYWSVIQTDKRKSEKSK
                     SLLLEFQRFVEYFNPGYVVVENVPGILSRMKESGLDNFIKLLEEKGFTVHFGIHNTAD
                     YGIPQSRKRFTLIANRITEEKLEPAKYSGKRLTVRDVLGMENGFPKIIAGHQDETDFM
                     HSCAGLSDINLKRLALIPKNGGNRLAFAHIPELQLECFIGKDNSFKDTFGRLWWDKPA
                     PTITTKFFSISNGRFAHPEEDRALSLREGATLQSFPRNYVFKAGSRDKIARLIGNAVP
                     PMYAEKIGRAIVDNIEC"
     gene            1571..3217
                     /locus_tag="WHR98_001307"
     CDS             1571..3217
                     /locus_tag="WHR98_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02391 family protein"
                     /protein_id="HEZ2307983.1"
                     /translation="MSEEKLKMSFEPTVIEHLGVKMYSHTVPAIAELIANAYDACATE
                     VEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLRIGRNRREEKQASPCGRIPTGKKGLG
                     KLALFGLGNKIEISTIQGNERVTFTLDYAEIKKSERIYQPEFQKESVEPNTENGTTIT
                     LTELTKKQGYPLDNYVEHLSRLFDFPAQDFKIKVSLNGSEPKIIDGNLKYDLVTPQFE
                     WEYQDLATNISSLSSKFEQYEYSGLIQGKFITTEKPLKNNMKGITLFANGRMVNMPEF
                     FTDSESSHFYSYLTGWLNVDFIDNDDEDLIATDRTSLDWKHSKTSKLRVFLGEIVRAI
                     GQDWRKRRKKEKDDEVKGESGVDIEDWKNKLPEKEREPVEVILNRLEDSELTNKEQAE
                     VISALHSIIPEYPYYHWRHLHQDLHTACNDFYNEKKDYLSAAIEAVKVFENKVQKQTG
                     LHSIDGRELIEQAFGSKNSILLLTNNKTKAEQNLEDGLEQLACGTWTGFRNPVQHELR
                     ANLSPSIFNDKDALDLISLVSYLLRKVEQTKKRSKVVSSK"
     gene            3221..3643
                     /locus_tag="WHR98_001308"
     CDS             3221..3643
                     /locus_tag="WHR98_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HEZ2307984.1"
                     /translation="MTDIFTTSKRSFVMSKIHSKETKPEILVRKFLFSQGFRYRKNDK
                     RYAGKPDIVLPKYKTVVFIHGCFWYGHSCNKGHIPKSNTDFWLEKITKNCERDIKNET
                     ELEKIGFKVIVVWECELKNKAIGRERLNRLVREIKDAV"
     gene            complement(3666..6965)
                     /locus_tag="WHR98_001309"
     CDS             complement(3666..6965)
                     /locus_tag="WHR98_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3418 domain-containing protein"
                     /protein_id="HEZ2307985.1"
                     /translation="MQNMKNQVRGSGMDARSNPANVSDGLQNSSGHIGTNTRYRLTKL
                     GEQMARLPIDPKIARILLAAKKHDCMAEILVIASALSIQDPRERPLEARDAAAKAHER
                     FTDKQSDFLAYLNIWDSFQRERDKGLSNKQLVQWCRQYFLSHLRMREWRELHHQLAQT
                     AIEMGLTTKEAAFRRPPEIRQLTSSENQGDQDLSAKLKQKQLDKKQHRAQIRAAKEAG
                     YEQIHRALLTGLIANVGMKSPDGNDYTGARGSRFHLFPASALFKAKPKWVMAAELVET
                     TKLYARDVAVIQPEWIEQEAPHLVRYHYFEPHWEQKRGEVVASERVTLYGLTVLPRRP
                     VSYGKVAPEEAREIFIRSALVAQECDLKADFFVHNKKLIKEITELEHKSRKQDVLVDD
                     EALFAFYNERLPEMAWKDAQGSVWGSEDSVRIIESDKAERSSENERNEFRKNKRNGSR
                     QNENHGNTVGWVENPTSAATAKTVGFDNPTYATQQPTPSPAREGRGEGKTVAAQTNFS
                     ATAANPLPQEREQSASASTFSDDLRPANLQQTAPSPVGEGWGEGKTVAAQTNFSATAA
                     NPLPNPLPQEGEQSAAASAVSNDPKPKKQPAPQKDRLKPLPLADIRTFQAWLKTAERE
                     NPRLLFLSRDDLMQHAAAHITEEQFPKFWQTADGKFKLSYRFEPHHPLDGVTMTVPLT
                     VLNRLHAPSLEWLVPGMIREKIQLQIKALPKQIRRICVPVPEFITQFLSQNPDRNAPI
                     LPQLAQAIAKTAGDIHIFEQINQDEWAAFRLPEHCYFNLRIIDDGGQELAGGRKLHEL
                     QQQLGQAAAVTFRDNTQEFERDNVTTWDIGTLPESIKFARGKQQLTGYLGLQKEKDGR
                     IALRLCDTIEAAEQAHRQGVIELMKLQLKEQVKDLNKGIQGFTQAAMLLKHINADTLR
                     DDLTQAVCDRAFIGEDELPRNEKAFKEQIKRARSRLPAVKEALSRYLQETAAAYAELN
                     GKLGKHPLTHLLRLRLQTLLAAGFATRTPWAQWPRLPIYLKAMTLRLEKYSSNPARDA
                     AREADTQELEQMWQEKTDSLIKQGLPISDGLAAFKWMIEELRVSLFAQELKTPYPVSV
                     KRLLKEWEDLN"
     gene            complement(7031..>7736)
                     /gene="lpt3"
                     /locus_tag="WHR98_001310"
     CDS             complement(7031..>7736)
                     /gene="lpt3"
                     /locus_tag="WHR98_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipooligosaccharide phosphoethanolamine
                     transferase"
                     /protein_id="HEZ2307986.1"
                     /translation="FRLAKEQGYETYFYSAQAENEMAILNLIGKKWIDHLIQPTQLGY
                     GNGDNMPDEKLLPLFDKINLQQGRHFIVLHQRGSHAPYGALLQPQDKVFGEADIVDKY
                     DNTIHKTDQMIQTVFEQLQKQPDGNWLFAYTSDHGQYVRQDIYNQGTVQPDSYLVPLV
                     LYSPDKAVQQAANQAFAPCEIAFHQQLSTFLIHTLGYDMPVSGCREGSVTGNLITGDA
                     GSLSIRDGKAEYVYPQ"
BASE COUNT         1929 a         1597 c         2128 g         2082 t
ORIGIN      
        1 caactgaccg aaaaaggcct aaaaatagag aaagcatccg ccgccgtcgt tgatgccacc
       61 attatccaga ccgccggcag caaacagcgc caggcccgat aacgcccggc ggaagttttt
      121 cggacatcgc gaaccttgcc ctgctgaaaa tacaaaaggc cgcgttcggc gatatggggc
      181 gggaacaggt gaggagggtg gatacggggc atggttggct tccaagaagt tgttgaaata
      241 tggggagttt actggttcgg gcgacgtttg gggagggggt gggaattctt gttttgggaa
      301 gtggaaaaag gtcgtctgaa aatgggtttc agacgacctt tctgtgaagt gtgcatttga
      361 agacatccgc tcgtttggag gaaattaagt tctgcttatt tagatgcatg aattttaata
      421 aaatctcaaa ttatttttga taagcaataa attatatgtt atataaagtt agttctcact
      481 agtctaatta tttaaataga aatgaaaaac agtaagttaa aggcggttga ttttttctgt
      541 ggcggaggtg gaatgagcta tggaatgcaa tccgccggta ttcaggtttt agccgggata
      601 gattacgaac ccagctgcaa agaaacatat gaagccaata taaatgccaa atttatacag
      661 gctgatgttt ttgaattgca gcctgaaacc ttggaaaaag aactcgggtt aaaaaagaat
      721 gatgatgatt tgattcttat aggttgtagt ccttgtcaat attggagtgt tattcaaaca
      781 gacaaaagaa aatcggaaaa atccaagagt ttacttttgg agtttcagcg gtttgtagaa
      841 tattttaatc ccggatatgt tgttgtagag aacgtaccgg gaattctgag caggatgaaa
      901 gaaagcgggc ttgataattt cataaaatta ttagaagaaa aaggatttac cgtccatttc
      961 ggtattcaca atacggctga ttacggaatt ccccaaagtc gtaaaagatt tacgttaatt
     1021 gcaaacagaa taaccgaaga gaagctggaa ccagccaagt attcgggcaa acggcttacg
     1081 gtacgcgatg ttttaggaat ggaaaatggc tttcccaaaa ttattgcagg acaccaagac
     1141 gaaacggatt ttatgcatag ctgtgcggga ttatctgata tcaacttgaa acgattggct
     1201 ttgataccta aaaacggagg aaaccgtttg gcttttgcgc atattcccga attacagctg
     1261 gaatgtttta tcggaaaaga caatagtttt aaagacacgt ttggtaggct atggtgggat
     1321 aagcccgcac ctaccataac gaccaaattc tttagtattt ccaacgggag gtttgcccat
     1381 cctgaagaag atagggcgtt atcactgcgc gaaggtgcaa cattgcaatc gttccctcgt
     1441 aactatgtct ttaaagcggg cagcagggac aagatagccc gtttgattgg taatgccgtt
     1501 cctccgatgt atgcggaaaa aataggcagg gcaattgttg ataatatcga atgttagaaa
     1561 aggagaaaac atgtctgaag aaaaattgaa aatgagtttc gagccaaccg taatcgaaca
     1621 tttgggtgta aagatgtatt cgcacactgt tcctgcgatt gccgagttga tagcgaatgc
     1681 ctacgatgca tgtgctacgg aagtggaagt taggttattc gataaaccgg agcataaaat
     1741 cgttattaaa gataatggta taggaatgag cttcgatgaa atcaatgatt tttatttgag
     1801 aatcggtcgg aacagaaggg aagaaaaaca agcctccccg tgcggaagaa ttccaacggg
     1861 taaaaaaggc cttggtaaat tggcattatt cgggcttggc aacaaaattg aaatttctac
     1921 tatccaagga aacgaacggg ttacttttac tttggattat gcagagatta aaaaaagtga
     1981 gcgtatttat caaccggagt ttcagaaaga atctgttgaa cccaataccg aaaacggaac
     2041 aaccataact ttaaccgaac tgacgaaaaa acaaggatac ccgttagata attatgtgga
     2101 gcatctttcc cgcttgtttg attttccggc tcaggatttt aaaatcaaag taagcttgaa
     2161 cggctcggaa cccaaaatca ttgatggaaa tctaaaatat gatcttgtta ccccacaatt
     2221 cgaatgggaa taccaggatt tagcaaccaa tatttcatcg ttatcttcaa aattcgaaca
     2281 gtatgaatac agcggattaa tacaaggtaa gttcattaca acggaaaaac ctttaaagaa
     2341 taatatgaaa ggtattacct tgtttgccaa cggcagaatg gtaaatatgc ccgagttttt
     2401 cactgatagc gaatccagcc atttctattc atatttgact ggatggctga atgtggactt
     2461 tatagataat gacgatgaag atttaattgc taccgacagg acatcattag actggaagca
     2521 ttcaaaaacc tcaaaattac gtgttttcct tggggagatc gtccgagcca tcgggcaaga
     2581 ttggagaaaa agaagaaaaa aagagaaaga tgacgaagtg aaaggcgaaa gcggagttga
     2641 tatcgaagat tggaaaaaca aattgccaga aaaggaaagg gaaccagtag aagttatttt
     2701 gaatcgtttg gaagattcgg agcttacaaa taaagagcaa gcggaagtaa tctctgcctt
     2761 acatagtatt attccagaat atccttacta tcattggcgg catttgcatc aggatttgca
     2821 tactgcctgt aatgattttt acaatgaaaa gaaggattat ttaagtgctg caatcgaggc
     2881 agttaaagtt ttcgaaaata aggttcagaa gcaaacaggt cttcatagca tagacggaag
     2941 agaattgatt gaacaagctt tcgggagtaa aaattctata cttctattaa cgaataacaa
     3001 aacgaaggcg gaacaaaatt tagaagatgg tcttgaacag cttgcatgcg gaacatggac
     3061 tggatttaga aatcctgtac aacatgagtt aagagcaaat ttatctccta gtatttttaa
     3121 tgataaggat gctttggatt taataagctt ggtttcgtat ttgttaagaa aagtggaaca
     3181 gacaaaaaaa cgatcgaagg tggtatcttc caagtaattt atgaccgata ttttcactac
     3241 atccaaacgt tctttcgtga tgtcaaaaat ccatagcaaa gaaaccaaac cggaaatatt
     3301 ggtaaggaaa tttcttttct cccaaggttt tcgttatcgg aaaaacgata aacgctatgc
     3361 aggcaaaccg gatatcgttt tgccgaaata taaaacagtc gtgtttatac acggctgttt
     3421 ttggtacggg cattcttgta ataaaggaca tatcccgaaa agcaatacgg atttttggtt
     3481 ggaaaaaatc acaaaaaatt gcgaacgtga tattaaaaat gaaaccgagc tggaaaagat
     3541 cggtttcaaa gtgattgttg tttgggagtg cgaattaaaa aataaagcta ttggtaggga
     3601 gcgattaaat cggttggtca gggaaataaa agatgccgtc tgaaaaaatt agacggcatc
     3661 ttcctttaat taagatcctc ccactctttc aacagccgct tcaccgacac cggatacggt
     3721 gtcttcaatt cctgcgcgaa cagcgacacc ctcaattctt caatcatcca tttaaacgcg
     3781 gcgaggccgt ctgaaatggg gagaccttgt ttaatcaggc tgtctgtttt ttcctgccac
     3841 atttgttcca gctcttgggt atcggcttcg cgggctgcgt cgcgggcggg gttgctgctg
     3901 tatttttcga ggcgcagggt catggctttg aggtagatgg ggaggcgcgg ccattgtgcc
     3961 cacggggttc gggtggcgaa gccggcggcg agcagggttt gcaggcgtag tcttagaagg
     4021 tgggtcaatg ggtgtttgcc gagtttgccg ttcagttcgg cgtaggcggc ggcggtttcc
     4081 tgcaggtagc ggctgagggc ttctttgacg gcgggcaggc ggctgcgggc gcgtttgatt
     4141 tgttctttga aggctttttc gttgcgcggc agctcgtctt cgccgataaa ggcgcggtcg
     4201 cagacggctt gggtgaggtc gtcgcgcagg gtgtcggcgt tgatgtgttt gagcagcatg
     4261 gcggcttggg tgaagccttg gatgcctttg ttcaggtctt ttacctgctc ttttaattgc
     4321 agcttcatca attcgatgac gccttgacgg tgtgcctgct cggcggcttc gatggtgtca
     4381 cacaggcgca gggcgatgcg gccgtctttt tctttttgca gaccgagata gccggtgagc
     4441 tgttgtttgc cgcgtgcgaa tttgatggat tcgggcaggg tgccaatgtc ccatgtggtc
     4501 acgttgtcgc gctcgaattc ttgggtgttg tcgcggaagg taacggcggc ggcttggccg
     4561 agctgttgtt gcaattcatg cagtttgcgg ccgccggcaa gctcttgtcc gccgtcgtcg
     4621 atgatgcgga ggttgaaata gcagtgttcg ggcagcctga acgcggccca ttcgtcttgg
     4681 ttgatttgct cgaatatgtg gatgtcgcct gcggttttgg cgatggcttg ggcgagttgg
     4741 ggcaggatgg gggcgttgcg gtcggggttt tggcttaaaa attgggtgat gaattcgggc
     4801 acgggcacgc agatgcggcg gatttgcttg ggcagtgctt tgatttgcaa ctggattttt
     4861 tcgcgtatca tgccgggcac cagccattcg agcgacggcg cgtgcaggcg gttgaggacg
     4921 gtcagcggca cggtcatggt cacgccgtcg agcggatggt gcggctcgaa gcggtaggaa
     4981 agtttgaact tgccgtctgc ggtttgccag aatttgggga attgctcttc ggtaatgtgt
     5041 gcggcggcgt gttgcatcaa atcgtcgcgg ctgaggaaca gcaggcgcgg gttctcgcgt
     5101 tcggcggttt tgagccaggc ttggaaggtg cggatgtcgg cgagggggag gggtttcaga
     5161 cggtcttttt ggggtgctgg ctgctttttg ggtttggggt cgtttgaaac cgctgaagct
     5221 gcggcactct gttccccctc ctgtgggaga gggttaggga gagggtttgc tgcggttgcg
     5281 gagaagttgg tttgtgcggc aactgttttg ccctctcccc agccctcccc cacgggggag
     5341 ggggcggttt gctgcagatt tgcaggacgc aggtcgtctg aaaacgttga agctgaggca
     5401 ctctgttccc tctcctgcgg gagagggttt gctgcggttg cggaaaagtt ggtttgtgcg
     5461 gcaactgttt tgccctctcc ccgaccctcc ctcgcggggg agggggtggg ttgctgagta
     5521 gcgtaggttg ggttgtcaaa cccaacagtt tttgcagttg cggctgatgt tgggttttca
     5581 acccaaccta cggtgttgcc gtgattttca ttttggcgag acccattacg cttgttttta
     5641 cgaaactcgt tgcgctcatt ttcagacgac ctctcggctt tgtcagattc aataatccgt
     5701 acggaatctt cacttcccca aacgctgcct tgcgcgtctt tccaagccat ttcgggcagt
     5761 cgttcgttat aaaacgcaaa cagggcttcg tcatcgacca gcacgtcttg cttgcgcgat
     5821 ttgtgttcga gttcggtaat ttctttaatc agctttttgt tgtggacaaa aaaatccgct
     5881 ttcaaatcgc attcctgcgc caccaacgcg ctgcggataa agatttcgcg cgcttcttcg
     5941 ggggcaactt tgccgtaaga cacggggcgg cgcggcaata cggtcagacc gtaaagcgtc
     6001 acgcgttcgc tggcgacgac ttcgccgcgt ttttgttccc agtgcggctc gaaatagtgg
     6061 tagcggacga ggtgcggggc ttcctgctca atccattcgg gctggataac ggcgacgtcg
     6121 cgcgcataaa gttttgtcgt ttcaacgagt tctgccgcca tcacccattt gggtttggct
     6181 ttgaacaggg cggaggcggg gaaaaggtgg aagcggctgc cgcgcgcgcc ggtgtagtcg
     6241 ttgccgtcgg gcgatttcat gccgacgttg gcgataaggc cagtgagcag ggcgcggtgg
     6301 atttgttcgt agcccgcttc tttggcggcg cggatttggg cgcggtgttg ctttttatcc
     6361 agttgttttt gcttgagttt ggcggatagg tcttggtcgc cttggttttc agacgacgtg
     6421 agctgcctga tttcgggagg tcgtctgaaa gcggcttcct tggtggtcaa acccatttca
     6481 atcgcggttt gggcaagctg gtggtgcagc tcgcgccact cgcgcatcct caggtgcgac
     6541 aggaaatatt gacggcacca ttgcaccaac tgcttgttgg acaaaccctt gtcgcgctcg
     6601 cgctggaagc tgtcccaaat gttcagatag gcaagaaagt cagattgctt gtcggtaaaa
     6661 cgctcgtgcg ccttggcggc ggcatcgcgt gcttccaacg gccgctcgcg cgggtcttga
     6721 atcgacagtg cggacgcgat caccaatatt tccgccatgc agtcgtgttt cttcgccgcc
     6781 aacaaaatgc gcgcgatttt cgggtcgatg ggcaggcgcg ccatttgttc gccgagtttg
     6841 gtcaggcggt aacgcgtgtt ggtaccgata tgacccgaac tgttttgcag gccgtctgaa
     6901 acattggctg ggttggatcg tgcatccatg cctgatccgc gtacttggtt tttcatattt
     6961 tgcatagtct tgtcggtcgg gcatcttccc cgacatcatc taaatttgtc tttattggtt
     7021 ttcacgtcgc ttattgcgga taaacatatt ccgccttgcc atcgcgaatg ctcaagctgc
     7081 ctgcatcgcc cgtaatcagg ttgcccgtta ccgagccttc gcgacaacct gaaaccggca
     7141 tatcgtagcc caacgtgtga atcaggaacg ttgaaagctg ctgatggaag gcaatctcgc
     7201 aaggcgcaaa agcctggttg gcagcctgtt gcacggcctt atccgggctg tacaacacca
     7261 gcggcacgag atagctgtcg ggctgcaccg tgccttgatt gtagatatct tggcgaacat
     7321 actggccatg atcggaggta taggcaaaca gccagttgcc gtcaggctgc ttttgcagct
     7381 gctcgaatac ggtttgaatc atttggtcgg ttttgtggat ggtgttgtcg tacttatcca
     7441 caatatcggc ttcgccgaat actttatctt gaggctgcaa caatgcgccg tatggggcgt
     7501 gcgaaccgcg ttggtgcaac acgataaaat gcctgccctg ctgcaaattg attttgtcga
     7561 acagcggcag cagcttctca tcgggcatat tgtcgccgtt gccgtagcca agctgcgtcg
     7621 gctgaatcag atggtctatc catttcttac cgattaagtt caaaatcgcc atctcgtttt
     7681 ccgcctgcgc gctgtaaaaa tacgtctcat agccctgctc tttggcgagg cggaac
//
LOCUS       DAWGNT010000090         7729 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.090, whole genome shotgun sequence.
ACCESSION   DAWGNT010000090 DAWGNT010000000
VERSION     DAWGNT010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7729
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.090"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(80..577)
                     /locus_tag="WHR98_001311"
     CDS             complement(80..577)
                     /locus_tag="WHR98_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEZ2307987.1"
                     /translation="MNNLPVADLLVFAIIAACIVISTMRGVIAEAGSMAAWVVSFFFA
                     KLFAAPFADLAFASFQPRLFALALSFISLFVIACLIQKMLRSLLTGAVSAVGLGFANR
                     ILGGVFGALKGVLIVTLLVMLASKTDLPDTEEWRQSYTVPFFVSLSEAVLNHADDSDG
                     ALEDD"
     gene            complement(570..1568)
                     /gene="ftsN"
                     /locus_tag="WHR98_001312"
     CDS             complement(570..1568)
                     /gene="ftsN"
                     /locus_tag="WHR98_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HEZ2307988.1"
                     /translation="MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSS
                     GPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDLAGEDKPSAADSEISEPENVGAP
                     LVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
                     KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKA
                     DKAESKKTAEKDRSDGKKHETAQKTDKADKTKTAEKEKSGKKAAIQAGYAEKERALSL
                     QRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKLRVHGIAGQVTNE"
     gene            complement(1581..2855)
                     /gene="folC"
                     /locus_tag="WHR98_001313"
     CDS             complement(1581..2855)
                     /gene="folC"
                     /locus_tag="WHR98_001313"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEZ2307989.1"
                     /translation="MKTLQDWLSHLETAHSGGLIDMGLERVGEVKKRMKLTPQCPVVV
                     VAGTNGKGSVCAYLTQIYKQAGFKVGTLTSPHLLRYNERIAVNAEPVSDDTIIASFER
                     IEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGRLDAVNAFDGDCAVVTSV
                     DLDHQAFLGDTVEQVGFEKAGVFRSGKPAICGQNPAPKSLLSHAEAIGAKLLMVQRDF
                     EFHAMENIQWNYRFRPQHSDGPARNRNALPFPALRGTYQLSNAACALTVLECLNDKLP
                     VDIGAIKRGLLLVENPGRFQVLPGRPLTVLDVGHNPHAARALRRSLINLAFAQKRTAV
                     FSMLSDKDIDGVLEIVKDQFDEWYIAPLDVPRGMTLESLQNKLHEHSIENIQTFAAVR
                     EAYRAAASKAGENDRIVVFGSFHTVADVMSVL"
     gene            complement(2887..3327)
                     /locus_tag="WHR98_001314"
     CDS             complement(2887..3327)
                     /locus_tag="WHR98_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator FolI"
                     /protein_id="HEZ2307990.1"
                     /translation="MRAFQTALRPSRILNILTVSLHSASLAVCLTWFYGRMMWFGLAA
                     LAASYAYSLRITNLKHRHAITAITIDRDGQAEIVSGKEKTAATLAGSSMVTPYALFLQ
                     WDTGGTTVSQCIIPDMTDKESYRRLKVWILWRQPKKTAETDTPS"
     gene            complement(3332..3691)
                     /locus_tag="WHR98_001315"
     CDS             complement(3332..3691)
                     /locus_tag="WHR98_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2307991.1"
                     /translation="MYFVDRTAVVLKQTVRFLEWLKSTDENMPDLTIEQLRANCSVFL
                     VPQFDEPEAVVSYFDERYRQIFEAELAGWDIDKDKWPQDMGLKAFWEFFDIEIHDMVL
                     DMEEADLNITPVFDNMM"
     gene            complement(3764..4492)
                     /locus_tag="WHR98_001316"
     CDS             complement(3764..4492)
                     /locus_tag="WHR98_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009173913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEZ2307992.1"
                     /translation="MIKFKNVHKHFKDLHVINGVNLEIKKGEVVVVCGPSGSGKSTLI
                     RTVNQLESIESGEIWVDGINVADPKTDLNKIREEVGFVFQSFNLYPHLTVLENITLAP
                     MKVKGQNAEQAEKKAMELLERVGLAHKKDAFPSQLSGGQQQRVAIARGLAMEPRVMLF
                     DEPTSALDPEMVGEVLKVMKDLAESGMTMMCVTHEMGFAREVADRVIFVDKGQILEDE
                     TPEAFFTNPKHERAKQFLQQVMTH"
     gene            complement(4665..5444)
                     /gene="rsmA"
                     /locus_tag="WHR98_001317"
     CDS             complement(4665..5444)
                     /gene="rsmA"
                     /locus_tag="WHR98_001317"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEZ2307993.1"
                     /translation="MKEHKARKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLA
                     AITEPLAKKLNRLHVVEIDRDIVCRLKTLPFADKLVIHEGDVLQFDFNNIEGKKKIVG
                     NLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVERMVAAPKSNDYGRLGVMLQYFFDM
                     EMLIDVPPESFDPAPKVDSAVVRMIPVKHRIGRADDFEHFAKLVKLAFHQRRKTIRNN
                     LKELAGDDDLQAVDINPQDRAEHIAPEKYVALSNYLAGKAV"
     gene            5641..6330
                     /locus_tag="WHR98_001318"
     CDS             5641..6330
                     /locus_tag="WHR98_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HEZ2307994.1"
                     /translation="MLFEGLPCLAVWCKNRLSAVLPVGGLNVSENLLEIETHPFDSVL
                     PPKAAVMMMGTFPPKEDKRAMQFHYPNFQNDMWRVYGLVFFNDAAHFQRLSEKAFDAE
                     KIKAFLRERGIASCPTVLKAAREHGNASDKFLKVVETVDLAAVLAKILDCRHICTTGG
                     KATEILLDIQGGGIKMPKTGETVPFPFAGRDLTLTRLPSTSRAYPLSLAKKAAAYRAF
                     FEMAGLCEKQL"
     gene            6515..7717
                     /gene="trpB"
                     /locus_tag="WHR98_001319"
     CDS             6515..7717
                     /gene="trpB"
                     /locus_tag="WHR98_001319"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEZ2307995.1"
                     /translation="MKNYHAPDEKGFFGEHGGLYVSETLIPALQELADAYKAAKNDPE
                     FWEAFRHDLKHYVGRPSPVYHAARLSEHLGGAQIWLKREDLNHTGAHKVNNTIGQALL
                     AKRMGKKRVIAETGAGQHGVASATVAARFGMTCDVYMGADDIQRQMPNVFRMKLLGAN
                     VVGVESGSRTLKDAMNEAMREWVARVDDTFYIIGTAAGPAPYPEMVRDFQCVIGNEAK
                     EQMLEAIGRQPDVAVACVGGGSNAIGLFYPYIEEENVRLVGVEAGGLGVDTPDHAAPI
                     TSKAPIGVLHGFRSYLMQDENGQVLGTHSVSAGLDYPGIGPEHSHLHDIKRVEYTAAK
                     DEEALEAFDLLCRFEGIIPALESSHAVAWAVKNAPKMGKDQVILVNLSGRGDKDINTV
                     AKLKGIKL"
BASE COUNT         1633 a         1993 c         2166 g         1937 t
ORIGIN      
        1 ctgtgatatg gcagaggaaa ggaaaaaaac atttcagacg gcataaaaga ggatgccgtc
       61 tgaaatatcc gtatggcaat caatcgtctt ccaaagctcc atcactgtcg tccgcatggt
      121 ttaacactgc ttcggaaagc gacacgaaaa acggtacggt ataggactgc cgccattctt
      181 cggtatcggg caggtcggtt tttgaagcaa gcatgaccag cagggtaaca atcaaaacgc
      241 ctttcaatgc accgaatacg ccgcccaaaa tgcggttggc aaagcccaaa ccgaccgccg
      301 aaactgcgcc ggtcagcagc gaacggagca ttttctggat cagacaggca atgacgaaca
      361 gggaaatgaa cgacagagcc aatgcaaaca ggcggggttg gaacgaggca aaggcgaggt
      421 cggcgaaggg tgcggcaaag agtttggcaa aaaagaagga aaccacccat gccgccatcg
      481 aacctgcctc cgcaatcacg ccgcgcatcg tggaaatgac gatgcaggcg gcgatgatgg
      541 cgaagacgag gaggtcggca acggggaggt tattcattcg ttacctgacc ggcgataccg
      601 tgtacgcgca atttgttcaa atcgcgttcg gcatcccttg cgtttttata gttgcttgat
      661 ttgacgcggt aaactttgcc gttgtcggtc ataatttcgg tgatggtcga atcgataccc
      721 gccgccttca ttttgcgctg gaggcttaag gcgcgttctt tttcggcata acctgcctga
      781 atggcggctt ttttaccgga tttttccttc tcggcggttt tggtcttgtc cgctttgtcg
      841 gttttttgtg ccgtttcgtg ttttttgccg tccgaacggt ctttttcggc tgtttttttg
      901 ctttcagcct tgtcggcttt tttcgcttct tttaccgcgc tgtcggattt tgccgtatcc
      961 ggtttggttt tttcggcggc agttttcggt ttgtcggcaa ctttttcggc ggttttggtt
     1021 tctttggctt tgggcttggc tttggcagtg cgttccgctt tttgcggttt tgtttcggca
     1081 gtgcgtttcg gtttttcaac cgctaccgta tccgtactgt cggcagttgc cggcactttt
     1141 tcggcagcgc gttgttttgc ctgcttcggt gcggttttgg cggtttctgc ctgttgcagt
     1201 ttctcggatg cttccaaacc tttgatgttg ctgtcttcga ggcggtcgtt aatcagcacc
     1261 agcggcgcgc ctacgttttc aggctcgctg atttcgctgt cggcggcaga aggcttgtct
     1321 tcgcctgcca agtcctgcgg tttgtcggcg gcggatttca aggcaggggt ttgtgccgca
     1381 cctgccgctt tgttttctac gccgcttgtt tcgccggcag tctgttcggc agggccggaa
     1441 ctgagggcgg ctgccagcag gatgcaggag gcggcaacca ggcaacttgc cgttacgagg
     1501 cggcggcggt tgcgccgttt gagttgttcg taaccgctca ggacttcgtt ttgtttgttt
     1561 tcggacatag aagtttcctt ttaaagtacc gacatgacat cggcaacggt atgaaatgag
     1621 ccgaaaacga cgattctgtc gttctcgccc gcttttgagg ctgccgcccg gtatgcttcg
     1681 cggacggcgg cgaatgtctg tatgttttcg atgctgtgtt cgtgcagttt gttttgcagg
     1741 ctctcgagcg tcatgccgcg cggtacgtcc aacggtgcga tataccactc gtcaaactgg
     1801 tctttaacga tttccaacac gccgtctatg tctttgtcgg acagcatact gaatacggcg
     1861 gtgcgttttt gcgcaaacgc caaattaatc aggctgcggc gcagggcgcg ggcagcgtgg
     1921 ggattgtgtc cgacatccaa aacggtcagc ggacggccgg gcaggacttg gaagcggccg
     1981 gggttttcaa ccagcagcaa accgcgtttg atggcgccga tgtccacagg caatttgtcg
     2041 ttcaagcatt ccaatacggt caacgcgcag gcggcgttgg aaagctggta tgtgccgcgt
     2101 aatgcaggga aaggcagggc attgcggttg cgtgcggggc cgtctgaatg ttgcggccgg
     2161 aagcggtagt tccattggat gttttccatc gcgtgaaact cgaaatcgcg ctgcaccatc
     2221 agcagtttcg cgcctatggc ttcggcgtgt gaaagcaacg atttgggcgc ggggttttga
     2281 ccgcagatgg cgggtttgcc gctgcggaac acgcctgctt tttcaaagcc gacctgctcg
     2341 accgtatcgc ccaaaaatgc ctgatggtcc aaatccacgc tggtaaccac cgcgcaatcg
     2401 ccgtcaaacg cgttgaccgc gtccaagcgt ccgcccaagc cgacttccaa tatcatcacg
     2461 tcaacctgtt cgcgcatgaa gatgtcgacc gccgccaagg cattgaattc aaaataagtc
     2521 agcgatattt cgccgcgcgc cgcttcgatg cgctcgaaag aggcaataat cgtatcgtcc
     2581 gaaacgggtt cggcgttgac ggcgatgcgt tcgttgtaac gcaataaatg cgggctggtc
     2641 agcgtaccga ctttaaagcc tgcctgtttg taaatctgtg tcaggtaggc gcagaccgaa
     2701 cctttgccgt ttgttcccgc gacaacgacg acggggcatt gcggcgtgag cttcatccgt
     2761 tttttcactt cgcctacgcg ttccaagccc atatcgatca agccaccgct gtgggcggtt
     2821 tccaaatgcg agagccagtc ttgcagtgtt ttcattgagt gttccgtgtt caaatgccgt
     2881 ctgaaatcag cttggtgtat cggtttcggc ggtttttttc ggctgccgcc aaagtatcca
     2941 gactttcagc cgccggtagg attctttgtc cgtcatgtcg ggtatgatgc attggctgac
     3001 ggttgtgccg cctgtgtccc attgtaagaa taaggcataa ggcgtaacca tactgctgcc
     3061 cgcaagtgtt gccgctgttt tttctttgcc ggatacgatt tccgcctgtc cgtcgcggtc
     3121 tatggtaatg gcggttatgg catggcggtg tttcagattc gttatcctga gcgagtatgc
     3181 gtaacttgcc gccaaagccg ccaaaccgaa ccacatcatc cggccgtaaa accaggtcag
     3241 gcagacggca agggaagccg agtggagcga tacggtcagg atgttcagga tacgggacgg
     3301 cctcaatgct gtctgaaagg cgcgcacagc cttacatcat attgtcgaac acgggcgtga
     3361 tgttcaaatc cgcttcttcc atatccaaca ccatatcgtg gatttcgatg tcgaaaaatt
     3421 cccaaaacgc cttcagcccc atatcttgcg gccatttatc cttatcgatg tcccaacctg
     3481 ccagctccgc ctcgaaaatc tggcggtagc gttcgtcgaa ataggaaacg acggcttccg
     3541 gctcgtcgaa ctgcggaacg aggaagacgg agcagttggc acgaagctgc tctatggtca
     3601 ggtcgggcat attttcgtcg gtgcttttga gccattccaa aaagcggacg gtctgcttga
     3661 ggacgacggc ggtgcggtca acaaaataca tggttttctt tctcaatcat cttgcggtgt
     3721 cgggatatgc tgtctgaacg ttcggttttc agacggcata gcatcaatgg gtcatgacct
     3781 gttgcaggaa ctgcttggcg cgttcgtgtt tcgggttggt gaaaaacgct tcgggcgttt
     3841 cgtcttcgag gatttgccct ttatcgacga aaatcacgcg gtcggcaact tcgcgggcaa
     3901 accccatttc gtgggttacg cacatcatcg tcatgccgct ttctgccaag tctttcatca
     3961 ctttcaacac ttcgccgacc atttcggggt cgagtgcgga ggtcggttcg tcaaacaaca
     4021 ttacgcgcgg ttccatcgcc aaaccgcgtg caatcgccac gcgttgctgc tggccgccgg
     4081 aaagttggga agggaaggcg tcttttttgt gtgccagtcc gacgcgttcc aaaagctcca
     4141 ttgccttttt ctccgcctgt tccgcatttt gccccttaac cttcatcggt gcgagggtaa
     4201 tgttttccaa cacggtcagg tgcgggtaga ggttgaaact ttgaaacaca aagccgactt
     4261 cttcgcggat tttgttcaaa tcggtttttg gatcggcaac gttgatgccg tccacccaaa
     4321 tctcgccgct ttcgatgctt tcaagctggt tgacggtgcg gatgagtgtg gatttgccgc
     4381 tgcccgaagg tccgcagacg acgaccactt cgcctttttt gatttccaag ttcacgccgt
     4441 tgatgacgtg caggtctttg aaatgtttgt gtacgttttt gaatttgatc atgtcttttc
     4501 tttcagacgg catttgccgt tgcaggttgt cgttacggga gctccatatg atgaagcgtg
     4561 tagcgtctgc cgtcaaaaaa acggtcgttc ggattggtca ggcaggctgc aagcggcagt
     4621 atcaggggta aaagcaggta tttcgtcatc ggcttactcc cttttcagac ggccttgccc
     4681 gctagataat tgctcaacgc cacatatttc tccggcgcga tatgttcggc acggtcttgc
     4741 ggattgatgt cgactgcctg caaatcatcg tcgcctgcaa gctctttcag attgttgcgt
     4801 atggttttgc ggcgttggtg gaaggcgagt ttcacgagtt tggcaaaatg ctcgaaatcg
     4861 tccgccctgc cgatgcggtg tttcaccgga atcatacgga cgacggcgga atccactttc
     4921 ggcgcagggt cgaacgattc gggcggcacg tcaatcagca tttccatatc gaagaaatat
     4981 tgcagcatca cgcccaaacg cccgtagtcg ttgcttttcg gcgcggcaac catgcgctcg
     5041 accacttctt tttgcagcat aaagtgcata tcgacgacat cgtccgccac ctccgccagc
     5101 ttgaacaaaa gcggcgtgga aatgttgtac ggcaggttgc cgacgatttt ctttttgcct
     5161 tcaatgttgt tgaaatcaaa ctgcaacacg tcgccttcat gaatgacgag tttatccgca
     5221 aacggcagcg ttttcagacg gcatacgatg tcgcggtcga tttcgacaac gtgcaggcgg
     5281 ttcagctttt tcgccaaagg ttcggtaatc gccgccaaac ccggaccgat ttcaatcacg
     5341 acatcatccg cctgcgggcg cacggcgttg acaatatcgc tgataatccg cgtgtcctgc
     5401 aaaaaattct gcccgaaacg cttgcgggct ttgtgttctt tcatcgtgtt tccttttcgg
     5461 ttgaaacccc gccctttagg gcggtagaat cagactctat ttgggagggg cgtaacccct
     5521 tccaaatcag gatggcacat agggcggtgc tttaagtgtc gtcctgtgtg ttgaaacata
     5581 aatgtgttta cagtatccgt ttgatgtcgg cattgtaacc gaaaacggca gggcgtgata
     5641 atgctgtttg aaggcttgcc gtgtttggcg gtttggtgca aaaaccggct gtctgccgtt
     5701 ttgcctgttg gaggattgaa cgtgtctgaa aatctgcttg aaatcgaaac ccatcccttc
     5761 gattccgtgt tgccgccgaa ggctgcggtc atgatgatgg ggacgtttcc gcccaaggaa
     5821 gacaaacgcg cgatgcagtt tcattatccg aatttccaaa acgatatgtg gcgcgtttac
     5881 gggctggtgt tttttaatga tgcggcgcat ttccaaaggt tgtctgaaaa agcgtttgat
     5941 gccgagaaaa tcaaggcgtt tttgcgcgaa cggggaattg cgtcctgtcc gaccgtgttg
     6001 aaggcggcaa gggaacacgg caatgcgtcc gacaagtttt taaaggtagt tgaaaccgtc
     6061 gatttggcgg cggtgttggc gaaaatacta gactgccgcc atatttgtac gacaggcggc
     6121 aaggcgacgg aaatcctgct cgatattcag ggtggcggca tcaaaatgcc gaaaacgggc
     6181 gaaaccgtgc cgtttccgtt tgccggacgg gatttgacgc tgacgcgcct gccttcgact
     6241 tcgcgcgcct atcctttgag tttggcgaaa aaagcggcgg cgtatcgggc gtttttcgaa
     6301 atggcgggct tgtgtgaaaa gcagttataa ttgccgacaa tttcccgttc ggacggcatg
     6361 tttgaaaaat atagtggatt aacaaaaatc aggacaaggc ggcgaagccg cagacagtac
     6421 aaatagtacg gcaaggcggg gcaacgccgt accggttttt gttaatccac tataaattgc
     6481 cgtctgaaaa tttgaagcac aaggacgaaa tctgatgaag aactaccacg cgcccgacga
     6541 gaagggcttt ttcggcgaac acggcgggct ttatgtctcc gaaaccctga ttcccgcctt
     6601 gcaagagctg gcggatgcct ataaggcagc gaaaaacgat cctgaatttt gggaagcgtt
     6661 ccgccatgat ttgaaacatt atgtcggcag gcccagcccc gtttaccacg ccgcgcggtt
     6721 gtccgaacat ctgggcggcg cgcaaatctg gttgaagcgc gaagacttga accacactgg
     6781 cgcgcacaaa gtcaacaaca ccatcggtca ggcactgttg gcaaaacgca tgggtaaaaa
     6841 acgcgtcatc gccgaaaccg gcgcgggtca gcacggcgtg gcgagtgcca ccgttgccgc
     6901 acgcttcggt atgacttgcg acgtgtatat gggcgcggac gacatccaac gccaaatgcc
     6961 caacgtgttc cgtatgaaat tattgggtgc gaacgtggtc ggtgtagaaa gcggcagccg
     7021 cacgctgaaa gacgcgatga acgaagccat gcgcgaatgg gtcgcccgcg tggatgacac
     7081 attctacatc atcggtaccg ccgccggtcc cgcgccgtat cccgaaatgg tgcgcgactt
     7141 tcaatgcgtg atcggcaatg aagccaaaga acaaatgttg gaagccatcg gcagacagcc
     7201 cgacgttgcc gttgcctgcg tgggcggcgg ctccaacgcc atcggtttgt tctatcccta
     7261 tatcgaagaa gaaaacgtac gtttggtcgg cgtagaagcc ggcggtttgg gcgtggatac
     7321 gccagaccac gccgcaccga ttaccagcaa agcccccatc ggcgtactgc acggcttccg
     7381 cagctatctg atgcaggacg aaaacggtca ggttttgggt acgcactctg tttccgcagg
     7441 cttggattac cccggcatcg gcccggaaca cagccatctg cacgacatca agcgcgtcga
     7501 atacaccgcc gccaaagacg aagaagcact cgaagccttt gacttgctct gccgcttcga
     7561 gggcatcatc cccgcgctcg aatccagcca cgccgttgct tgggcggtga aaaacgcgcc
     7621 gaaaatgggc aaagaccaag tgattctggt caacctatcc ggtcgtggcg acaaagacat
     7681 caataccgtc gcgaagctca aagggattaa actgtaacct cgtccgtct
//
LOCUS       DAWGNT010000091         7653 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.091, whole genome shotgun sequence.
ACCESSION   DAWGNT010000091 DAWGNT010000000
VERSION     DAWGNT010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7653
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.091"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            339..563
                     /locus_tag="WHR98_001320"
     CDS             339..563
                     /locus_tag="WHR98_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEZ2307996.1"
                     /translation="MKVISVLNQKGVSGKTTVATHLARALQLAGNSILLVDSDPQGSS
                     RDWAAVHEEQPVPVIGIDSPTIDRDLKSVV"
     gene            576..983
                     /locus_tag="WHR98_001321"
     CDS             576..983
                     /locus_tag="WHR98_001321"
                     /inference="COORDINATES: protein motif:HMM:NF025001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partitioning protein ParA"
                     /protein_id="HEZ2307997.1"
                     /translation="MIDGAPQTADLAISAIKASDLVLIPVQPSPYDIWATADLVNLIK
                     QRIKLIDGNLKAAFLINRTIKGTKIGGEIRAALEEYELPVLSTVIVQRIIYPTSAITG
                     STVLDKEPNGEAAKEIQSLANEIINLINIDNHI"
     gene            1026..1229
                     /locus_tag="WHR98_001322"
     CDS             1026..1229
                     /locus_tag="WHR98_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partitioning protein ParB"
                     /protein_id="HEZ2307998.1"
                     /translation="MNGLKADRPSANKANLSIDDVIKQEEIKRISFDMSESLHRELKK
                     YAAENGVTIRVVLNKLVSDLLNK"
     gene            1405..2568
                     /locus_tag="WHR98_001323"
     CDS             1405..2568
                     /locus_tag="WHR98_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEZ2307999.1"
                     /translation="MHINFSMEYKEFNENYLYKKPFIFKNALDVSSISWKEINELYQR
                     ADPTDWQFKFRKGEIIPKEAYVESFNDVGRIRHRFNKTAVYQYLQDGATMVYNRIDNE
                     PFVDSIAKQIAQFAQAQTVVSGYLAFGSSPSYRNHWDTRDVFAVQLIGKKHWTVSAPN
                     FDMPLYMQQAKDMPHITPPTTVDMEVILEAGDILYIPRGWWHNPMPMNCETFHLAIGT
                     FPPNGYNYMEWLMKKIPDIQSIRQNFIDWEHDQKNIDNAAQAVTEMMKNQENYQAFIQ
                     DFLGNQRVNTAFNMQIFGNLDNDRLPENSTIKLNSLDNRTIKQGYIIANGIKTNLDND
                     SQTILQWIADKHSVKLTQLYEFCQNQNINLEKVEKLVFDLTMIDVLECLTDER"
     gene            2575..2781
                     /locus_tag="WHR98_001324"
     CDS             2575..2781
                     /locus_tag="WHR98_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308000.1"
                     /translation="MFTFLNKNIFIKTIVLGCFYSFLFFSFFVSGKSFGYSFEIFNMD
                     TSALAFLSVFMGFFISVAVHIYDI"
     gene            2805..3140
                     /locus_tag="WHR98_001325"
     CDS             2805..3140
                     /locus_tag="WHR98_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin transporter"
                     /protein_id="HEZ2308001.1"
                     /translation="MKELTINDLTLVSGGFEFGRDYIEIAPVVGTAGGVASSVRAASM
                     TGEAGAILTRSGVTGLRAGVVAIPLLAYNGTVWVNRNTKLQDNLGRLIDKVTGLDQSG
                     NDYGDGTSY"
     gene            3175..5271
                     /locus_tag="WHR98_001326"
     CDS             3175..5271
                     /locus_tag="WHR98_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase domain-containing ABC transporter"
                     /protein_id="HEZ2308002.1"
                     /translation="MSIYLSRLSFGFSRRLLVVLQTEAAECGLACLVSVLGFHGFYTD
                     LRYLRGRFSLSLKGATLADLVRFATSMNLTARAVRLDLDELVNLRLPCILHWDLNHFV
                     VLHEVHRNHIIIMNPASGWQKIRMEEVSRCFTGVALELFPNTQFEEKQETRKIRVLPM
                     LRGVVGLKRSLFQLLLLATVLQVFALASPFFMQWVIDHAIVSADRDLLLTLALGFGLL
                     MIVQQLVSLLQTWAGMYLSTSLNIQWKANVFSHLMDLPISYFAKRHLGDVVSRFGSVD
                     SIQSTLTSTFFVLVINSILAVFTLGLMYLYSPSLMAVVLVVLLIYIGIRWVAYYPLRH
                     ATEENIVHAAKQSSYFMETIRGIQTVKLFDKNTQRHAAWLNLFIDTINTGLTTQKLSA
                     LFGFANSLLFGIANILIVYFGAVSVLNGGFTVGALMAFMSYKSQFESKAGSLIDQFVQ
                     IKMLGLHAERLADIVLEETENEQNNDFSLPKNLEHFDIQIENVSFSYAENEPYILQNF
                     SLIIKQGTAIAFAGHSGCGKSTLIQILTGSLKPESGHVLLGGHDIHALPPAFIRTWSA
                     SVMQNDVLFTGSIAENISFFDDTPNMEKIAFCAQMANIHHEIVAMPMAYETLIGDMGS
                     ALSGGQKQRIVLARALYREPKILFLDEASSHLDINNERVINDNLRQLNITKIMVAHRQ
                     ETLNTADSVVYLDKVA"
     gene            5273..6535
                     /locus_tag="WHR98_001327"
     CDS             5273..6535
                     /locus_tag="WHR98_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEZ2308003.1"
                     /translation="MTLFRPEVFQAKKNRWTGQIVLVRPFSLQFLTFFAVSLAAILVA
                     FLIFGSYTNKTTVTGQLLPTTGVVRVYSQDMGVIAHQHVMNGDFVKKGDVLFTLSTSR
                     NDNNGSIQARLLAEAELKKSLSEQEIIMKKRVHAAEKTAQENTVHRFQNQMQHVRNQI
                     IMQEKRIAISEKMLEKQRYLAKMDAISELEKNSYEIALLELKAGLAAYQREADNLARE
                     ITVQQSNLKNLPEQQATEISQLERAVSVYQQEILDYQQRNEQTIRATISGYVSSINTE
                     IGQQVDTNKLLMSIVPKESELLANLYVPSRAIGFVKPNDKVILRYQAYPYQKFGHAEG
                     HVISIAQTALGAQEWTNLGNIFTQTAQVNEPVYLIKVKLDNQHIRIYGTEKKLQIGMI
                     LEADILHENKRLYEWILDPLYQVMGKIS"
     gene            complement(6805..7644)
                     /locus_tag="WHR98_001328"
     CDS             complement(6805..7644)
                     /locus_tag="WHR98_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308004.1"
                     /translation="MGNFAKVSNCEFWDKINYNRAAQAAEQRAKQAQETPKEPPKQEE
                     HFIAKLPNDKLMTIYRLFQKQLDDMRGLERDIERGDWYINARYRMNENRNKIRALEDD
                     NKRLHHDYWAVQDQGENRFFGMGKIGAKLVKENEKQQHINERHGANVREIRRLKTENE
                     KLEGQYSDKLAADVVKVRDRFNEELDNVRREIGKRPMEEFRNVFLQAAQEAQTTIGQK
                     AVQIELEKFPLNGSPSAKRIAFYFGAQRIREVEQKEREDQRKEQERQARRMERDDGHG
                     IGM"
BASE COUNT         2326 a         1361 c         1554 g         2412 t
ORIGIN      
        1 ccggatgcct gattatgggg cgtccgggga ggattaaggg ggcatttggg taaaatcagg
       61 agtaattagg agcggaaata gacgaaaacc tgtgtttggg tttcggctgt tgggggaagg
      121 gcttttttgc aaaggtctca atttaaactt taacgcaata tcaactcatt ttctgccaca
      181 tatctcaaaa aagtctagtt tgatacagta atctctttaa cagcttttct tgctaaaatt
      241 taaaacaaaa tgtaaatatt cttttattta tttaaataat agattaaaat attatttaat
      301 taaaagcata atgagcgtag atattcaaag gagctaacat gaaagttatt tccgtattaa
      361 atcaaaaggg tgtaagtggt aaaaccacag tcgcaactca cttggcacgc gccttgcaat
      421 tagcaggaaa tagcatctta ttggttgata gcgatccaca aggaagcagt agggactggg
      481 ctgctgttca cgaagagcaa cctgttcctg tgattggtat tgacagcccg acaattgatc
      541 gtgatttaaa aagcgttgtt taaaaagatt ttgttattat tgatggcgca ccacaaacag
      601 ccgatttagc catatcagcg attaaagcct ctgatttagt tttaatccct gttcaaccgt
      661 cgccatacga tatttgggca accgctgatt tggttaattt aatcaagcag cggataaaac
      721 tcatagatgg aaatttaaag gctgcttttt taattaaccg aactattaaa ggaacaaaga
      781 ttggcggaga aattagagca gcgttagaag aatatgagtt acctgtttta tcaaccgtga
      841 ttgtgcaacg tattatttat ccaacatctg ctatcacagg tagcactgta ctggataaag
      901 aaccaaatgg agaagcagct aaggaaattc aatcacttgc gaatgagata ataaatttga
      961 taaatataga taatcatatt taatgaaata ttattttaaa tttttaaata ttgtaggaaa
     1021 taattatgaa cggattaaaa gcagatcgtc ctagtgcaaa caaagcaaac ttatctattg
     1081 atgatgtgat caagcaagaa gaaatcaaga gaatcagttt tgatatgtct gaatctctgc
     1141 atagagaatt gaagaaatac gcggctgaga atggtgtaac tattcgcgtc gtgctcaata
     1201 aactcgtttc agatttattg aataaataat aacacacggc agaatgtatt tgaccataat
     1261 gtcaaagcaa tatccaactt tatctaaaaa taacaaaata ccttcttcca aaaacagaac
     1321 gtcttttcat tgcaaaactt gacatataaa cactagttaa gtaaacttaa ttttcattat
     1381 taataatgaa aataaggatt atttttgcat attaactttt caatggaata taaagaattt
     1441 aatgaaaatt atttatataa aaagccattt atttttaaaa atgctttaga tgttagttct
     1501 atctcatgga aagaaattaa tgagttgtat caacgtgcag accctactga ttggcaattt
     1561 aaatttcgca aaggggaaat aatccccaaa gaagcctatg ttgaatcatt caatgatgtg
     1621 ggtagaatac gtcatcggtt taataaaaca gccgtatatc agtatctgca agatggtgca
     1681 acaatggttt ataaccgtat tgataatgag ccatttgttg acagtattgc taaacaaatt
     1741 gcccagtttg ctcaagcaca aactgttgtt agtggttatt tggcgtttgg tagttctcca
     1801 tcatatcgta atcattggga tactcgtgat gtgtttgcgg ttcaattgat tggcaaaaaa
     1861 cactggacag tttctgctcc aaattttgat atgccattgt atatgcagca agcaaaagat
     1921 atgccgcaca ttactccgcc tacaacagta gatatggaag tcattttaga agcaggagat
     1981 attttatata tcccgcgtgg ttggtggcat aatcctatgc ctatgaattg tgaaacattc
     2041 catttagcta ttggaacttt tccgccaaat ggttataatt atatggaatg gttgatgaaa
     2101 aaaatacctg atatccagag tattcgtcaa aatttcatag actgggaaca cgaccaaaaa
     2161 aatatagata atgcggctca ggcagttact gaaatgatga agaaccaaga aaattatcaa
     2221 gcattcatac aagatttttt gggaaatcaa cgcgtaaata ctgcatttaa tatgcaaatt
     2281 tttggaaatc tggataatga cagattacct gaaaatagta caattaaact caattcgttg
     2341 gataaccgta caattaaaca aggatatatc atagcgaatg gcatcaaaac caacttggac
     2401 aatgatagcc aaacgatttt gcaatggatt gctgacaaac atagtgttaa gttaactcaa
     2461 ctgtatgaat tttgccaaaa tcaaaacatt aatttggaaa aagtggaaaa attagtgttt
     2521 gatttgacaa tgatcgatgt attggaatgt ttaactgatg aaagataaat tattatgttt
     2581 acttttttaa ataaaaatat atttatcaaa acaattgtac ttggctgttt ttattccttt
     2641 ttatttttta gtttttttgt atctggtaag tcatttggtt attcatttga aatttttaat
     2701 atggatacaa gtgcgcttgc ttttttaagt gtatttatgg gcttttttat aagcgtggct
     2761 gtgcatattt acgatattta atacaattga aaagataaat aattatgaaa gaattaacta
     2821 ttaatgattt aaccctagtt tcgggtggat ttgaatttgg tcgtgattat attgaaatag
     2881 ctccagttgt aggtacagca ggtggcgttg cctcttctgt gagagcagct tcaatgactg
     2941 gagaagctgg agcaattctt actcgttcag gagtaacagg attacgtgct ggagtggtag
     3001 ctattccatt gttagcctac aatggtactg tatgggttaa tagaaatacc aaattacaag
     3061 ataatttagg tagattaata gataaagtaa ctggcctgga tcaatcaggc aatgattatg
     3121 gcgatgggac aagttattaa tctcataata ctttaaaatc aaaaaagaac accaatgtca
     3181 atatatctat ctcgcctatc attcggcttt tctcgccgtt tactagttgt cttgcaaacg
     3241 gaagcagcag aatgtggatt ggcgtgtttg gtatcggtat tggggtttca tggtttttat
     3301 acggatttgc gctatttaag ggggcgtttt tctttgtcgc ttaaaggcgc cacattggca
     3361 gatttggtac ggttcgctac gagcatgaat ttaaccgctc gagctgttcg gttagattta
     3421 gatgaattgg taaatttgcg cttaccctgt attttacatt gggatttaaa tcattttgta
     3481 gtgttgcatg aagttcatcg caatcacatt ataattatga atcccgcttc gggttggcaa
     3541 aaaatacgta tggaagaagt ctctcgctgt tttacaggag tagcgttgga actatttcct
     3601 aacacgcaat ttgaagagaa acaagaaacg cgcaaaattc gcgtattacc aatgttgcgc
     3661 ggagtggtgg gattaaaaag atctttattt cagcttttac tgttggctac tgtattacag
     3721 gtgtttgctt tggcaagccc tttttttatg caatgggtaa tagaccatgc cattgtatcg
     3781 gcagaccgtg atttattgct gacattggca ttgggttttg gcttgttgat gattgtgcag
     3841 cagttagtgt cattgttgca aacttgggcg ggtatgtact tatctacctc tttgaatatc
     3901 caatggaaag ctaacgtatt cagccactta atggatttgc ctatttctta tttcgctaaa
     3961 cgacatttag gtgatgtggt ttcgcgtttt ggctcggtgg acagtattca aagtacgctc
     4021 acttctactt tctttgtgct ggtgatcaac agcattctgg ccgtatttac attaggatta
     4081 atgtatttgt acagcccgag tttaatggca gttgtgctgg ttgttttgct gatttatatt
     4141 ggtattcgtt gggtggcata ttatccatta cgccatgcaa ccgaagaaaa tattgttcat
     4201 gctgccaagc agagcagtta tttcatggaa accatacgag gtattcaaac ggttaaatta
     4261 tttgataaaa atacacaacg tcatgcggct tggctgaatt tatttattga cacgattaac
     4321 acaggtttaa cgacacaaaa actttccgcg ctgttcggtt ttgcgaacag ccttttattt
     4381 ggtatcgcta atattttaat tgtgtatttt ggtgcggttt ctgtattgaa cggtggtttt
     4441 accgttgggg cgttaatggc gtttatgtcc tacaaaagtc agtttgagag taaagcaggt
     4501 tcattgattg accagtttgt acaaatcaaa atgctaggat tacacgcgga acgcttggcg
     4561 gatattgtgc tagaagaaac ggaaaatgaa caaaacaacg atttcagtct gcctaaaaat
     4621 ttagaacatt ttgatattca aatagaaaat gtatcattta gctatgctga aaatgaacca
     4681 tacattttgc aaaatttcag tttaatcatc aaacaaggaa cagccattgc gtttgctgga
     4741 cattcaggct gtgggaaatc tacgctcatt caaattctga caggcagtct gaaacctgaa
     4801 agcggtcatg tgttattagg tgggcatgac attcatgcgt taccacctgc atttatccgc
     4861 acatggagcg caagtgtgat gcaaaatgat gtgttattta ctggctcaat cgcagaaaac
     4921 atcagttttt ttgatgatac gcccaatatg gaaaaaatcg cattttgcgc tcaaatggcg
     4981 aatattcatc atgaaattgt cgctatgcct atggcgtatg aaacattgat tggcgacatg
     5041 gggagtgcat tgagtggtgg gcaaaagcag cgcatcgtac tagctcgtgc tttatatcgt
     5101 gaaccaaaaa ttttgttttt agatgaagcc agtagccatt tggacatcaa caatgaacgt
     5161 gtgattaacg ataatctacg ccaactcaac attaccaaaa tcatggtcgc gcatcgtcag
     5221 gaaactttaa atactgctga tagcgtagtt tatttagaca aggtagcctg aaatgacatt
     5281 atttcgcccc gaagtattcc aagctaaaaa aaatcgctgg acagggcaaa ttgttttagt
     5341 gcgtcctttt tccttgcagt ttttaacatt tttcgcggtc tcattagcgg ctattttagt
     5401 tgctttttta atttttggga gctataccaa taaaaccacc gtaacaggac aacttttgcc
     5461 gacaacaggg gtagtacgcg tatattcgca ggatatgggg gttattgctc atcaacacgt
     5521 tatgaatggc gattttgtga aaaaaggcga tgtgttattt acattatcta cttcacgaaa
     5581 tgacaataat ggcagcatac aagcacgatt actcgccgaa gctgaattaa aaaaatcact
     5641 atcagaacaa gaaattatta tgaaaaaacg tgttcatgca gcagaaaaaa ccgcacaaga
     5701 aaacacggta caccgttttc agaaccaaat gcaacacgtt agaaatcaaa ttatcatgca
     5761 agaaaaacgt attgcgattt ctgaaaaaat gttagaaaaa cagcgttatt tagccaaaat
     5821 ggacgcaatt tctgaattag aaaaaaatag ttatgaaatt gctttattgg agctgaaagc
     5881 aggtttagcc gcttaccaac gagaagcaga taatcttgct cgggaaataa ctgtacagca
     5941 aagcaatcta aaaaatctgc ctgaacagca agctactgaa atcagtcaat tagaacgcgc
     6001 agtatctgtc tatcaacaag aaatattgga ttatcaacaa cgtaacgaac aaactattcg
     6061 cgcaaccata tcaggctatg tcagttctat taacacggaa attggtcagc aggtagatac
     6121 taacaaacta ttgatgagta tcgtgccgaa agaaagtgaa ttactggcta atttatatgt
     6181 ccctagtcgc gcaatcggtt ttgtaaaacc aaatgacaag gtaattttgc gttatcaagc
     6241 atatccttat caaaaattcg gacacgcaga aggacacgtc atttctattg ctcaaacggc
     6301 actaggggcg caagaatgga caaatttagg caatattttt actcaaacag cacaagtgaa
     6361 tgagcctgtt tatttaatca aagtaaaact ggataatcag catattcgta tatatggcac
     6421 ggagaagaaa ttgcaaattg gtatgatact agaagccgat attttgcatg agaataaacg
     6481 gttatatgaa tggatacttg accctttgta tcaagtaatg ggaaaaatat catagctgaa
     6541 ttgctcaata cattggagcg tatgagtgcc cctaattatc aagcaaaacc aatgtccgat
     6601 gacttccaat ttgttgttaa gcacaaatac acagtgtttt atgtaataat gaagacagag
     6661 aagtgataca atttttcgct ccatttttgc ttcctgaatt gctgcaattg tatctgcgtt
     6721 gtatgcgaga agtaaatatt ttcgatgcat ttgctgactt tgtaccataa tacgtcttcc
     6781 aaccagtatg ataggctggt ttttctacat gccgatgccg tggccgtcgt cccgctccat
     6841 acgccgcgcc tgccgctcct gctctttgcg ctggtcttcc cgctccttct gctctacttc
     6901 ccttatccgc tgcgcgccga aataaaacgc gattcgcttg gccgaagggc tgccgttcag
     6961 ggggaatttt tccagttcga tttgaaccgc cttctgccct attgtcgtct gtgcttcttg
     7021 ggctgcctgc aaaaatacgt tcctgaattc ttccatcggc cgtttgccga tttccctgcg
     7081 gacattgtcc agttcttcgt taaacctgtc gcgtactttg accacgtcgg cggccaactt
     7141 gtcgctatac tgcccttcca gtttttcgtt ttctgttttc agccgccgga tttctcgcac
     7201 gttcgctcca tgccgttcgt tgatgtgttg ctgcttctcg ttttccttaa ccagttttgc
     7261 gccgatttta cccatgccga aaaagcggtt ttcgccttgg tcttggactg cccaatagtc
     7321 gtgatgcagc cgtttgttgt cgtcttccag cgcccttatt ttgtttcggt tttcgttcat
     7381 gcggtatcgc gcattgatgt accaatctcc gcgttctata tcgcgctcca agccgcgcat
     7441 gtcgtccagt tgtttttgaa acagcctgta tatcgtcatt agcttgtcgt tcggcagctt
     7501 ggcgataaag tgctcttcct gtttcggcgg ctctttcggt gtttcctgcg cctgctttgc
     7561 ccgctgctcg gcggcttggg cagcccgatt ataattaatt ttatcccaga attcacaatt
     7621 tgagaccttt gcaaaattcc ccaaaatccc tac
//
LOCUS       DAWGNT010000092         7558 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.092, whole genome shotgun sequence.
ACCESSION   DAWGNT010000092 DAWGNT010000000
VERSION     DAWGNT010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7558
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.092"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            15..419
                     /locus_tag="WHR98_001329"
     CDS             15..419
                     /locus_tag="WHR98_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HEZ2308005.1"
                     /translation="MGSLFGLHKSFGFLTLTVITLRIVWAVANRAKRPQSDSKAAAAG
                     HGILYLLMLAVPVIGMIRQYGSGRGPLKVFGVEVMQGSPEKIEWMANLGNTFHGNLGW
                     LLFAAVVGHVAMVVVHRVQGKDVLYRMTGRVR"
     gene            complement(454..1329)
                     /gene="rsmI"
                     /locus_tag="WHR98_001330"
     CDS             complement(454..1329)
                     /gene="rsmI"
                     /locus_tag="WHR98_001330"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEZ2308006.1"
                     /translation="MFQKHLQKASDSVVGGTLYVVATPIGNLADITLRALAVLQKADI
                     ICAEDTRVTAQLLSAYGIQGKLVSVREHNERQMADKIVGYLSDGMVVAQVSDAGTPAV
                     CDPGAKLAGRVREAGFKVVPVVGASAVMAALSVAGVEGSDFYFNGFVPPKSGERRKLF
                     AKWVRAAFPIVMFETPHRIGATLADMVELLPERRLMLAREITKTFETFLSGTVGEIQT
                     ALVADGNQSRGEMVLVLYPAQDEKHEGLSESAQNIMKILTAELPTKQAAELAAKITGE
                     GKKALYNLALSWKNK"
     gene            1383..1730
                     /locus_tag="WHR98_001331"
     CDS             1383..1730
                     /locus_tag="WHR98_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEZ2308007.1"
                     /translation="MRLNHKQGEAGEDAALAFLQSQGCTLLARNWHCAYGEIDLIVKN
                     GGMILFVEVKYRKNRQFGGVAYSISPSKLLKLQRSVEYYLQQNRLTNVPCRLDAVLIE
                     GNRPPEWIQNITG"
     gene            1735..2328
                     /locus_tag="WHR98_001332"
     CDS             1735..2328
                     /locus_tag="WHR98_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoheptose isomerase"
                     /protein_id="HEZ2308008.1"
                     /translation="MTTLQERVAAHFAESIRAKQEAEKVLVEPTVQAAELMLQCLMND
                     GKILACGNGGSAADAQHFAAEMTGRFEKERMELAAVALTTDTSALTAIGNDYGFNHVF
                     SKQVRALGRAGDVLVGISTSGNSANVIEAIKAAHERDMHVIALTGRDGGKIAAMLKDT
                     DVLLNVPYPRTARIQENHILLIHAICDCIDSVLLEGM"
     gene            2392..3000
                     /locus_tag="WHR98_001333"
     CDS             2392..3000
                     /locus_tag="WHR98_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HEZ2308009.1"
                     /translation="MKPKPHTVRTLIAAIFSLALSGCVSAVIGSAAVGAKSAVDRRTT
                     GAQTDDNVMALRIETTARSYLHQNNQTKGYTPQISVVGYNRHLLLLGQVATEGEKQFV
                     GQIARSEQAAEGVYNYITVASLPRTAGDIAGDTWNTSKVRATLLGISPATQARVKIVT
                     YGNVTYVMGILTPEEQAQITQKVSTTVGVQKVITLYQNYVQR"
     gene            3008..3658
                     /locus_tag="WHR98_001334"
     CDS             3008..3658
                     /locus_tag="WHR98_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308010.1"
                     /translation="MPSEPPSDGIARHPKSTIKMAKKPNKPFRLTPKLLIRVVLLICI
                     TAIGALAIGIVSTFNPNGGKTLQTEPQHTDSPRETEFWLPNGVVGQDAAQPEHHHAAS
                     SEPAQPDGTDESGSGLPSPAAPKKNRVKPQPADTAQTDRQPDDAGTQAENTLKETPVL
                     PTNVPRPEPRKETPEKQAQPKETPKEKETPKENHTKPDTPKNTPPKPHKEILDNLF"
     gene            3698..4477
                     /gene="map"
                     /locus_tag="WHR98_001335"
     CDS             3698..4477
                     /gene="map"
                     /locus_tag="WHR98_001335"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003677158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEZ2308011.1"
                     /translation="MNGIIIKTPEEIEKMRELGKLVAEALDYIGQFVKPGVTTDEIDK
                     LVYDYHVNVQGGYPAPLHYGNPPYPKSCCTSVNHVICHGIPDDKPLKEGDIINIDLTI
                     KKDGFHGDSSRMFTVGKVSPIAQRLIDVTHASMMAGIEAVKPGATLGDVGYACQQVAE
                     NAGYSVVQEFCGHGIGRGFHEAPQVLHYGKKGQGPVLKPGMIFTVEPMINQGKRHLRI
                     LNDGWTVVTKDRSLSAQWEHEVLVTETGYEILTVSPASGKP"
     gene            4632..4931
                     /locus_tag="WHR98_001336"
     CDS             4632..4931
                     /locus_tag="WHR98_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEZ2308012.1"
                     /translation="MKIFENIEDVKAIRKKTGLNQIDFWGKVGVTQSGGSRYETGRKM
                     PKPVRELLRLVHIECIDLAKVNKKDMEIAALLKKHHPDLYAELSKQTKSERKKQS"
     gene            5169..5543
                     /locus_tag="WHR98_001337"
     CDS             5169..5543
                     /locus_tag="WHR98_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HEZ2308013.1"
                     /translation="MKLLTTAILSSAIALSSMAAAAGTNNPTVAKKTVSYVCQQGKKV
                     KVTYGFNKQGLTTYASAVINGKRVQMPVNLDKSDNVETFYGKEGGYVLGTGVMDGKSY
                     RKQPIMITAPDNQIVFKDCSPR"
     gene            complement(5731..7197)
                     /locus_tag="WHR98_001338"
     CDS             complement(5731..7197)
                     /locus_tag="WHR98_001338"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate:quinone oxidoreductase"
                     /protein_id="HEZ2308014.1"
                     /translation="MAEATDVVLVGGGIMSATLGVLLKELEPSWEITLIERLEDVALE
                     SSNAWNNAGTGHSALCELNYAPLGANGIIDPARALNIAEQFHVSRQFWATLVAEGKLE
                     DNSFINAVPHMSLVMNEDHCSYLQKRYDAFKTQKLFENMEFSTDRNKISDWAPLMMRG
                     RDENQPVAANYSAEGTDVDFGRLTRQMVKYLQGKGVKTEFNRHVEDIKRESDGAWVLK
                     TADTRNPDGQLTLRTRFLFLGAGGGALTLLQKSGIPEGKGYGGFPVSGLFFRNSNPET
                     AEQHNAKVYGQASVGAPPMSVPHLDTRNVDGKRHLMFGPYAGFRSNFLKQGSLMDLPL
                     SIHMDNLYPMLCAGWANMPLTKYLLGELRKTKEERFASLLEYYPEANPDDWELITAGQ
                     RVQIIKKDSEKGGVLQFGTEIVAHADGSLAALLGASPGASTAVPLMIRLMHQCFPERA
                     PSWEDRLKELVPGYGIKLNENPERADEIIAYTAKVLDI"
BASE COUNT         1949 a         2277 c         1847 g         1485 t
ORIGIN      
        1 aagaggcgga atgggtgggc agcctgttcg gcctgcacaa atctttcggt ttccttacgc
       61 tgacggtgat tacattgcgc atcgtgtggg cggttgccaa ccgcgccaag cgtccgcaaa
      121 gcgacagcaa ggctgcggcg gcaggacacg gcattctgta tctgctcatg cttgccgttc
      181 ccgttatcgg catgatccgc caatacggca gcggccgcgg cccgttgaaa gtgttcggcg
      241 ttgaggtgat gcagggttcg ccggaaaaaa tcgagtggat ggcaaacttg ggcaacacgt
      301 tccacggcaa tttgggctgg ctgctgtttg ccgccgtcgt cggacacgtc gccatggtcg
      361 tcgtccaccg tgttcaaggc aaagacgtgc tgtaccgcat gacggggcgt gtccgttgat
      421 tccgttcgca ttatggtgcc ggtccgtccg gcatcatttg tttttccaag acagtgccag
      481 attgtacaaa gctttttttc cctcgcccgt gattttggcg gcaagctccg ccgcctgttt
      541 ggtcggcagc tcggctgtga ggattttcat gatgttttgc gcggactcgg acaagccttc
      601 gtgtttttca tcctgcgccg gataaagcac caacaccatc tcgccgcgcg attggttgcc
      661 gtccgccacc aatgccgtct gaatttcccc aaccgtgccg cttaagaacg tttcaaacgt
      721 tttcgtaatt tcgcgcgcca gcatcagacg gcgttcgggg agcagttcca ccatatcggc
      781 aagcgtcgcc ccgattcggt gcggcgtttc aaacatgacg ataggaaatg ccgcccgcac
      841 ccatttggca aacagtttcc tacgttcgcc cgatttcggc ggtacaaaac cgttgaaata
      901 aaaatcggat ccttccacac cggccacgct caaagccgcc atcaccgcgc ttgcgcccac
      961 gacgggaacg actttaaacc cggcctcacg cacgcggccg gcgagtttgg cacccgggtc
     1021 gcacacggcc ggcgtacccg catcggaaac ctgtgccaca accatgccgt ctgaaagata
     1081 gccgacaatc ttgtccgcca tctgccgttc gttgtgttcg cgcacactga caagtttgcc
     1141 ctgaatgccg tacgcgctca aaagctgcgc ggtaacgcgc gtgtcttcgg cacagatgat
     1201 gtccgccttt tgcaataccg ccaaagcgcg cagggtaatg tccgccaaat tgccgatggg
     1261 cgtggcaacc acgtataatg tccctccgac gacgctgtcg gaggctttct gcaagtgttt
     1321 ctgaaacata aaaaatgccg tctgaaaaac aaacattata aattataaag gttaaaccga
     1381 ttatgcgcct aaaccacaaa cagggcgagg caggggaaga tgccgcgctt gccttcctcc
     1441 aatcccaagg ctgcacactg cttgcccgca actggcactg cgcctacggc gaaatcgacc
     1501 tgattgtcaa aaacggcggt atgattctgt ttgttgaagt aaaataccgc aaaaatcggc
     1561 aattcggcgg tgtcgcatac agcatttccc catccaaatt attgaaactg caacgaagtg
     1621 tagagtatta tctgcaacag aacaggttga caaacgtacc gtgccgcctc gatgcggtac
     1681 tgattgaagg aaaccgcccg cccgagtgga tacagaatat tacaggttga cgatatgacg
     1741 acattacaag aacgcgttgc cgcccatttt gccgaaagca tccgtgccaa acaggaagcc
     1801 gaaaaagtac tggtcgagcc gaccgtacag gctgccgagc tgatgctgca atgcctgatg
     1861 aacgacggca agattctggc gtgcggcaac ggcggttcgg ccgccgatgc ccagcacttc
     1921 gccgccgaaa tgaccggacg ctttgaaaaa gagcgcatgg aactcgccgc cgtcgccctg
     1981 accaccgaca catccgcgct gaccgccatc ggtaacgact acggcttcaa ccacgtcttc
     2041 agcaaacagg tacgcgccct cggacgtgca ggcgacgtct tggtcggcat ttccacttcc
     2101 ggcaactccg ccaacgtcat cgaagccatt aaagcggcac acgaacgcga tatgcacgtc
     2161 atcgccctga ccggccgcga cggcggcaaa atcgccgcca tgctcaaaga caccgacgtt
     2221 ctgctcaacg tcccctatcc gcgcaccgcc cgcattcagg aaaaccacat cctgctgata
     2281 cacgccatat gcgactgtat cgactccgta ctgctggaag gaatgtaacc cttttcagac
     2341 ggcatggcgc aaagcaatgc cgtctgaaac gcccaagaaa ggaagcaccc gatgaaaccc
     2401 aaaccgcaca ccgtccgcac cctgattgcc gccattttca gccttgccct tagcggctgc
     2461 gtcagcgcag taatcggaag cgccgccgtc ggcgcgaaat ccgccgtcga ccgccgaacc
     2521 accggcgcgc aaaccgacga caacgttatg gcgttgcgta tcgaaaccac cgcccgttcc
     2581 tacctgcacc aaaacaacca aaccaaaggc tacacgcccc aaatctccgt cgtcggctac
     2641 aaccgccacc tgctgctgct cggacaagtc gccaccgaag gcgaaaaaca gttcgtcggt
     2701 cagattgcac gttccgaaca ggccgccgaa ggcgtgtaca actacattac cgtcgcctcc
     2761 ctgccgcgca ctgccggcga catcgccggc gacacttgga acacatccaa agtccgcgcc
     2821 acgctgttgg gcatcagccc cgccacacag gcgcgcgtca aaatcgttac ctacggcaac
     2881 gtaacctacg ttatgggcat cctcaccccc gaagaacagg cgcagattac ccaaaaagtc
     2941 agcaccaccg tcggcgtaca aaaagtcatc accctctacc aaaactacgt ccaacgctga
     3001 ctcggcaatg ccgtctgaac cgccttcaga cggcattgcc cgacacccca aaagcacaat
     3061 caaaatggca aaaaaaccga acaaaccctt caggctgacc cccaaactcc tgatacgcgt
     3121 cgtattgctc atctgtatca ccgccatcgg cgcattggca ataggcatcg tcagcacatt
     3181 caacccgaac ggcggcaaaa ccctccaaac cgaaccgcaa cacaccgaca gcccccgcga
     3241 aaccgaattc tggctgccaa acggcgtagt cggacaagat gccgcccaac ccgaacacca
     3301 ccacgccgcc tcatccgaac ccgcacagcc ggacggcaca gacgaaagcg gcagcggact
     3361 gccgtcccct gccgcaccca agaaaaaccg ggtcaaaccg caacctgccg acacagctca
     3421 aaccgacagg cagccggacg acgccggaac acaagctgaa aacacactca aagaaacccc
     3481 cgtactgccc acaaacgtcc cccgtcccga accccgaaaa gaaacacccg aaaaacaggc
     3541 gcagcccaaa gaaacaccca aagaaaaaga aacgcccaaa gaaaaccata ccaaaccgga
     3601 caccccgaaa aacacgccgc ccaaacccca taaagaaatt ctcgacaacc tcttctgacc
     3661 cggcacggca ggcacacccg caatccaagg aagcattatg aacggcatca tcatcaaaac
     3721 ccccgaagaa atcgaaaaaa tgcgcgagct gggcaaactc gtcgccgaag ccctcgacta
     3781 catcggacaa ttcgtcaaac ccggcgtaac caccgacgaa atcgacaaac tcgtttacga
     3841 ctaccacgtc aacgtccaag gcggctatcc cgcccccctg cactacggca acccgcccta
     3901 ccccaaatcc tgctgcacct ccgtcaacca cgtcatctgc cacggcattc ccgacgacaa
     3961 gccgctcaaa gaaggcgaca ttatcaacat cgacctcacc atcaaaaaag acggcttcca
     4021 cggcgactcc agccgtatgt ttaccgtcgg caaagtctcc cccatcgccc aacgcctgat
     4081 cgacgtaacc cacgcctcca tgatggcggg catagaagcc gtcaaacccg gcgcgacact
     4141 gggcgacgta ggttacgcct gccaacaggt tgccgaaaac gccggctatt ccgtcgtaca
     4201 ggaattctgc ggacacggca tcgggcgcgg tttccacgaa gccccgcaag tgttgcacta
     4261 cggaaaaaaa ggacagggcc ccgttctaaa accgggtatg atttttaccg tcgaaccgat
     4321 gatcaaccaa ggcaaacgcc acctgcgtat cctcaacgac ggctggacgg tggttaccaa
     4381 agaccgctcc ctctccgccc aatgggaaca cgaagtcttg gtgaccgaaa ccggctacga
     4441 aatcctcacc gtcagccccg cctccggcaa accctgaagc cggacgtatc cgccccataa
     4501 aaacaaacaa tgccgtctga aagaaacggc agatatgata tataatataa aaacaggctt
     4561 gacccggcac attacgaaaa caaagcaaat cggaatttgc cccgcaacca gacaaactta
     4621 aaggaagttt tatgaaaata tttgaaaata tagaagatgt taaagccatc cgtaaaaaga
     4681 ccgggctgaa ccagatagac ttctggggca aggtcggcgt tacccagtct ggaggctcgc
     4741 gctacgaaac cggccgcaaa atgcccaaac ccgtacgcga actgctccgc ctcgtccata
     4801 tcgaatgcat cgatttggcg aaagtcaaca aaaaagatat ggaaatcgcc gccctgttga
     4861 aaaaacacca tcccgacctg tatgccgaat tgtccaaaca gaccaagtcc gaaagaaaaa
     4921 aacaaagtta aaccgcaacc tccggatgcc cgacagtttt tcatttccga aaaacgcaaa
     4981 caatgccgtc tgaaacaccg gacaggccgc cgtatcccgc ctgccgcccc tgcctcaaac
     5041 cgccgaaccg cccgaacccg cctttttaca aactttatcc aatttcctgt ttatttcagg
     5101 atacgccgac attagaatgt caaacagctc gaaacgggca aactccacat ccatccaaag
     5161 gaataaaaat gaaacttctg accaccgcaa tcctgtcttc cgcaatcgcg ctcagcagta
     5221 tggctgctgc tgccggcacg aacaacccca ccgttgccaa aaaaaccgtc agctacgtct
     5281 gccagcaagg taaaaaagtc aaagtaacct acggcttcaa caaacagggt ctgaccacat
     5341 acgcttccgc cgtcatcaac ggcaaacgtg tgcaaatgcc tgtcaatttg gataaatccg
     5401 acaatgtgga aacattctac ggcaaagaag gcggttatgt tttgggtacc ggcgtgatgg
     5461 atggcaaatc ttaccgcaaa cagcccatta tgattaccgc acctgacaac caaatcgtct
     5521 tcaaagactg ttccccacgt taatcaggca acaaaaaaca gcgttttcag aaatgaaaac
     5581 gctgtttttt tgaccgttcc attattcgca aaagggaaaa aacgattacc tgccccgtgt
     5641 atcaaaacct gccctgccgg atgaagggca taaccggcag ggacggcgtc aacaccatat
     5701 gggggtacgg cttttcttga aagattcggc ttaaatatcc aatactttcg cggtataggc
     5761 gataatttca tccgcccttt cagggttttc gttcaacttg atgccgtaac ccggtaccag
     5821 ctctttcaga cggtcttccc aagacggggc gcgctcgggg aagcattggt gcatcagccg
     5881 gatcatcagc ggcacagcgg tcgatgcgcc cggcgacgcg cccagcaatg cggcgagtga
     5941 gccgtcggcg tgggcgacaa tctccgtacc aaactggagc acgccgcctt tttcggagtc
     6001 ttttttaatg atttggacgc gttgccctgc ggtgatgagt tcccagtcgt cggggtttgc
     6061 ctcggggtag tattccagca gggaggcgaa gcgttcttct ttggttttac gcaattcgcc
     6121 cagcaggtat ttggtcagcg gcatattcgc ccagccggcg cacagcatag gatagaggtt
     6181 gtccatatgg atggacagcg gcaaatccat aagcgagcct tgcttgagga agttggaacg
     6241 gaagcctgcg taagggccga acataaggtg gcgtttgccg tccacgttgc gtgtgtcgag
     6301 gtgcgggacg gacatcggcg gcgcgccgac ggaagcctgc ccgtacactt tggcgttgtg
     6361 ttgttcggcg gtttcggggt tgctgttgcg gaagaacagg ccggacacgg ggaagccgcc
     6421 gtagcctttg ccttcgggga tgccggattt ttgcagcagg gtcagcgcgc cgccgcccgc
     6481 gccgaggaag aggaagcggg tacggagggt gagctgcccg tcggggttgc gggtatcggc
     6541 ggttttgagc acccacgcgc cgtcggattc gcgtttgatg tcttcgacgt ggcggttgaa
     6601 ctcggttttt acgcccttgc cctgcaaata tttcaccatt tggcgcgtca gccgtccgaa
     6661 atcgacatcc gtaccttcgg cggagtagtt ggcggcgacg ggttggtttt cgtcccggcc
     6721 gcgcatcatc agcggagccc aatcggaaat tttgttccga tcggtggaaa attccatatt
     6781 ttcaaaaagt ttttgggttt taaacgcgtc ataacgtttt tgaagataag aacaatggtc
     6841 ttcattcatc accaaagaca tatgcggcac ggcattgatg aaggaattgt cttccaactt
     6901 gccttccgcg accagcgtcg cccaaaactg gcggctgaca tgaaactgtt cggcaatatt
     6961 gagggcgcgc gccggatcga taatcccatt tgcacccaac ggcgcatagt tcaattcgca
     7021 cagcgcggaa tgccccgtgc cggcgttgtt ccacgcgttt gacgattcca acgccacatc
     7081 ttccaagcgt tcaatcaggg tgatttccca agacggttcg agttctttga gcaaaacgcc
     7141 caaagtcgcg ctcataatgc cgccgcccac caagacaacg tctgtcgctt cagccatggt
     7201 ttactcctaa aaaacaggca tcttctgccc ttatggttat ttgccgtact acaaacgcct
     7261 gaatcgcaaa agcagggaaa accggcaatg gtgtgtgtcc gagtatgctg tttcggggtt
     7321 ggaatgcgtt gcaagtatgg cttccgacac cgcttcaggg gcttgtaata tgttatcgtg
     7381 aatgtagtgg attttactgg gaaatgcaaa gtttttctgt cgcccgccaa gtcgggaaac
     7441 tgcgaaatga aaaataaaaa tagttattta tctatatata tcaaattttt aatagataaa
     7501 aaatcaaaat tgtttatata ttaattttta aaagattgtc agcatattgc gttaagtt
//
LOCUS       DAWGNT010000093         7412 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.093, whole genome shotgun sequence.
ACCESSION   DAWGNT010000093 DAWGNT010000000
VERSION     DAWGNT010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7412
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.093"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            144..1154
                     /gene="dusB"
                     /locus_tag="WHR98_001339"
     CDS             144..1154
                     /gene="dusB"
                     /locus_tag="WHR98_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEZ2308015.1"
                     /translation="MHIGGYFIDNPIALAPMAGITDKPFRRLCRDFGAGWAVCEMLTS
                     DPTLRNTRKTLHRSDFADEGGIVAVQIAGSDPQQMADAARYNVSLGAQLIDINMGCPA
                     KKVCNVQAGSALMQNEPLVAAILEAVVRAAGVPVTLKTRLGWHDDHQNLPVIAKIAED
                     CGIAALAVHGRTRTQMYKGEARYELIAETKCRLNIPVWVNGDITSPQKAQAVLKQTAA
                     DGIMIGRGAQGRPWFFRDLKHYAEHGVLPPALSLAECAAAILNHIRAIHAFYGDTAGV
                     RIARKHIGWYIDEMPDGEQTRREINRLDSAAAQYDMLAGYLERLAEKTDSWACAYRPN
                     AF"
     gene            1184..1423
                     /locus_tag="WHR98_001340"
     CDS             1184..1423
                     /locus_tag="WHR98_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fis family transcriptional regulator"
                     /protein_id="HEZ2308016.1"
                     /translation="MPHTLPDISQCIRQNLEQYFKDLNGTEPCGVYDMVLHQVEKPLL
                     VCVMEQCGGNQSKASVMLGLNRNTLRKKLIQHGLL"
     gene            1426..1962
                     /gene="ruvC"
                     /locus_tag="WHR98_001341"
     CDS             1426..1962
                     /gene="ruvC"
                     /locus_tag="WHR98_001341"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEZ2308017.1"
                     /translation="MSATVRILGIDPGSRVTGFGIIDVRGRDHFYVASGCIKTPADAP
                     LADRIAVIVRHIGEVVTVYKPQQAAVEQVFVNVNPASTLMLGQARGAALAALVSHKLP
                     VSEYTALQVKQAVVGKGKAAKEQVQHMVVQMLGLSGTPQADAADGLAVALTHALRNHG
                     LAAKLNPSGMQVKRGRFQ"
     gene            2013..2882
                     /locus_tag="WHR98_001342"
     CDS             2013..2882
                     /locus_tag="WHR98_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="HEZ2308018.1"
                     /translation="MKFIFFVLYVLQFLPFALLHKIADLTGLLVYLLVKPRRRIGEIN
                     LAKCFSEWSEEKRKTVLKQHFKHMAKLMLEYGLYWYAPAGRLKSLVRYRNKHYLDDAL
                     AAGEKVIILYPHFTAFEMAVYALNQDIPLISMYSHQKNKILDEQILKGRNRYHNVFLI
                     GRTEGLRALVKQFRKGSAPFLYLPDQDFGRNDSVFVDFFGIQTATITGLSRIAALANA
                     KVIPAIPVREEDNTVTLHFYPAWESFPSEDAQADAQRMNRFIEDRVREHPEQYFWLHK
                     RFKTRPEGSPDFY"
     gene            3632..4426
                     /locus_tag="WHR98_001343"
     CDS             3632..4426
                     /locus_tag="WHR98_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEZ2308019.1"
                     /translation="MNTILAFDIETVPDVQGIRTLYELPSSLPDDEVVLFAQQKRRAQ
                     TGGDFMQHHLHQIVAISCCMRWGQDKVHVGTIGEMDDGEEVVIAKFFELIEKHTPQLV
                     SWNGGGFDLPVLHYRSLIYGINAARYWDMGDGDFGDSRDFKWNNYISRYHQRHCDLMD
                     LLALYQPRANVPLDDMAKLCGFPGKLGMDGSKVWDAFHAGRLKEIRNYCETDAVNTYL
                     MYLRFCLVSGRFDADEYEMEIKRIRNYLSAQTEDKPHWSEFAQAWK"
     gene            4638..7241
                     /gene="pepN"
                     /locus_tag="WHR98_001344"
     CDS             4638..7241
                     /gene="pepN"
                     /locus_tag="WHR98_001344"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HEZ2308020.1"
                     /translation="MSKTVRYLKDYQTPAYRILETDLHFDIAEPQTVVKSRLTVEPQR
                     VGEPLVLDGSTKLLSVKINGVAADYVLEGETLTIADVPSERFTVEVETEILPAENKSL
                     MGLYASGGNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDG
                     GECSDGRHWVKWEDPFAKPSYLFALVAGDLAVTEDCFTTMGGRNVKIEFYTAEADKPK
                     VGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENKGLNIFNTKFVLADS
                     RTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRA
                     VRRIENIRLLRQHQFPEDAGPTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLG
                     EEGFQKGMKLYFQRHDGQAVTCDDFRAAMADANGINLDQFALWYSQAGTPVLEAEGRL
                     KNNSFELTIKQTVPPTPDMADKQPMMIPVKVGLLNRNGEAVAFDYQGKRATEAVLLLT
                     EAEQTFQFESVTEAVVPSLLRGFSAPVHLNYPYSNDDLLLLLAHDSDAFTRWEAAQTL
                     YRRAVAANLAALSDGIELPKHEKLLAAVEKVISDDLLDNAFKALLLGVPSEAELWDGT
                     ENIDPLRYHQAHEALLDTIAVRFLPKWHELNRQAAKQENQSYEYSPEAAGWRTLRNVC
                     RAFVLCADPAHIETVAEKYGEMAQNMTHEWGILSAVNGNESDTRNRLLAQFADKFSDD
                     ALVMDKYFALVGSSRRSDTLQQVQTALQHPKFSLENPNKARSLIGSFSRNVPHFHAED
                     GSGYRFIADKVIEIDRFNPQVAARLVQAFNLCNKLEPHRKNLVKQALQRIRAQEGLSK
                     DVGEIVGKILD"
BASE COUNT         1851 a         1941 c         1963 g         1657 t
ORIGIN      
        1 ccgcctgtga gtggcggggc agggaatctg tgtgcggatt atgccataaa acggtgtccg
       61 acccaatcgc gggcgcgtcc ggagattgga aatcctgctt aaaaaatgta caatggcgta
      121 cttttttgaa acgcggatcc attatgcaca tcggcggcta ttttatcgac aaccccatcg
      181 cacttgcgcc gatggcgggc attaccgaca aaccgttccg ccgactttgc cgagattttg
      241 gcgcaggttg ggcggtgtgc gaaatgctga ccagcgaccc gacgctcaga aatactagaa
      301 aaaccttgca ccgcagcgat tttgccgatg aaggcggcat tgttgccgtg cagattgccg
      361 gaagcgatcc gcagcagatg gcggatgccg cgcgttacaa cgtcagcctt ggggcgcagc
      421 ttatcgacat caacatgggc tgtcccgcta aaaaagtctg caatgtccaa gccggtagcg
      481 cgctgatgca gaacgagccg ctggttgccg ccattttgga agccgtcgtc cgtgcggcag
      541 gcgtacccgt taccctcaaa acccgtttgg gttggcacga cgaccatcaa aacctgcccg
      601 tcatcgccaa aatcgccgaa gattgcggca tcgccgccct tgccgtccac ggacgcacgc
      661 gtacgcaaat gtacaaaggc gaagcgcgtt acgaactcat cgccgaaacc aaatgccgtc
      721 tgaacatccc ggtctgggtc aacggcgaca ttacttcgcc gcaaaaagcc caagccgtcc
      781 tcaaacaaac cgccgccgac ggcattatga tagggcgcgg cgcgcaaggc aggccgtggt
      841 tcttccgcga tttgaaacat tatgccgaac acggtgtttt gccgcctgcc ttgagtttgg
      901 cagaatgcgc cgccgctatt ttgaaccaca tccgcgccat acacgcgttt tacggcgaca
      961 ccgccggtgt gcgcatcgca cgcaaacaca taggctggta catcgacgaa atgcccgacg
     1021 gcgaacagac acgtcgtgaa atcaaccgct tggacagtgc ggcggcgcaa tacgacatgc
     1081 ttgcaggtta tcttgaaaga cttgccgaaa aaaccgacag ttgggcgtgc gcctaccgcc
     1141 caaatgcctt ctgaacactt gattatcctt tgaaagtgca atcatgcccc atacccttcc
     1201 cgatatttcc caatgcatca gacaaaattt agaacaatat ttcaaagacc tgaacggtac
     1261 cgaaccttgc ggcgtgtacg atatggtatt gcatcaggtg gaaaagccgc tgctggtgtg
     1321 cgtgatggag caatgcggcg gtaatcagtc caaagcctcc gtcatgttgg gactgaaccg
     1381 caataccttg cgtaaaaaac tgattcaaca cggtttgctg tgaatatgtc ggcaaccgtc
     1441 cgtatcttgg gcattgaccc gggcagccgc gtaacgggtt tcggcatcat cgatgtcagg
     1501 gggcgcgatc atttttacgt tgcctcaggc tgcatcaaaa cgcctgccga tgcgcctctg
     1561 gcagacagga ttgccgtcat cgtccggcac atcggcgaag tcgttaccgt ttacaagcct
     1621 caacaggcgg cggtggaaca ggtgttcgtc aacgtcaatc ctgcatcgac gctgatgctc
     1681 ggtcaggcgc ggggcgcggc attggcggca ttggtcagcc ataagctgcc cgtttcggaa
     1741 tacacggcct tgcaggtcaa acaggcggtg gtcggcaagg gtaaggcagc gaaagaacag
     1801 gtgcagcata tggtggtgca gatgctgggg ctttcgggaa caccgcaggc ggatgcggcg
     1861 gacggtcttg ccgtcgcgct gacccacgcc ttacgcaacc acgggcttgc cgccaaactc
     1921 aatccttcag ggatgcaggt caagcgcgga aggtttcaat agtttcagac ggcatttgta
     1981 ttttgccgtc tgaaaagaaa atgtgtatcg agatgaaatt tatatttttt gtactgtatg
     2041 ttttgcagtt tctgccgttt gcgctgctgc acaagattgc cgacctgacg ggtttgcttg
     2101 tctaccttct ggtcaaaccg cgccgccgta tcggcgaaat caatttggca aaatgttttt
     2161 ccgaatggag tgaggaaaag cgtaaaaccg tgttgaaaca gcatttcaaa cacatggcga
     2221 aactgatgtt ggaatacggt ttatattggt acgcgcctgc cggacgtttg aaatcgctgg
     2281 tgcgctaccg caataagcat tatttggacg acgcgctggc ggcgggggaa aaagtcatca
     2341 tcctgtatcc gcacttcacc gcgttcgaga tggcggtgta cgcgcttaat caggatatcc
     2401 cgctgatcag tatgtattcc catcaaaaaa acaagatatt ggacgaacag attttgaaag
     2461 gccgcaaccg ctatcacaac gtcttcctta tcgggcgcac cgaagggctg cgcgccctcg
     2521 tcaaacagtt ccgcaaaggc agcgcgccgt ttctgtatct gcccgatcag gatttcggac
     2581 gcaacgattc ggtttttgtg gattttttcg gtattcagac ggcaacgatt accggattga
     2641 gccgcattgc cgcgcttgca aatgcaaaag tgatacccgc cattcccgtc agggaggagg
     2701 acaatacggt tacattgcat ttctaccctg cttgggaatc ctttccgagt gaagatgcgc
     2761 aagccgacgc gcagcgcatg aaccgtttta tcgaagacag ggtgcgcgaa catccggaac
     2821 aatatttttg gctgcacaag cgttttaaaa cccgtccgga aggcagcccc gatttttact
     2881 gactacgtaa aattacaaaa catatcaggc gtttcaagtc gaaattcctg attgtttttg
     2941 gaaatttgaa atccgggtcg tgcaaacagg atttgccgga cggttttaac ggttcagttg
     3001 tttgtaaaaa caatgctttt taagattgac aaaaaaccag aatcaggttt tagggcttat
     3061 tccgcgaaca aagggggcgg atgccgaaaa tccgattaat atattaaaat taaatttgtt
     3121 taaaaacata aagttgtaaa caagtatctc atataagcct ttttcattaa acagatagtc
     3181 agatattttg tgctaaaaat ttatataata tttaaattaa tatcaagtta taaaaatata
     3241 tagaatttta ttttgtttat ttataatttt aagcaataat ctaaatcagg cattttgatt
     3301 cccctgtttt aaaaaatact tggcaaggtg tgaaaaaagg cgtacattcc gctacacaga
     3361 attacagacg cagcggagca atgccgtctg aaaggatttt ccggtcaatc ttgcgattgg
     3421 tcggggtttc atcggaaacg gtgaaacaaa agtttgccgg cgtagagttg agctacgcgg
     3481 gcaaagccgc aggcgaaagc ctgtattgtt tgtgaagcgt aaatctctga tttgaggtat
     3541 tggggcaatc ctgtgggggg ttgcctcttt ttttatccgc cttttaatga cacaataggc
     3601 gcaagtctgt ttttgaatgc aaggtactgc catgaatacg attttggctt tcgatattga
     3661 aaccgtaccc gatgtgcagg gtatccgaac attgtacgag ctgccgtcct cgctgcccga
     3721 cgatgaagtg gtgctgtttg cccagcaaaa acgccgtgct cagacgggtg gggattttat
     3781 gcagcatcat cttcatcaga ttgtggcgat ttcgtgctgc atgcgttggg ggcaggataa
     3841 agtccatgtc ggcaccatcg gcgagatgga cgatggcgaa gaagtcgtga ttgccaaatt
     3901 tttcgagttg attgaaaaac atacgccgca actggtcagt tggaacggcg gcggtttcga
     3961 cctgccggtt ctgcattacc gctccctgat atacggcatt aacgccgcgc gctattggga
     4021 tatgggcgac ggcgatttcg gcgacagccg cgatttcaag tggaacaact acatcagccg
     4081 ttatcaccaa cgccactgcg atttgatgga tttgctcgcg ctttaccagc cgagggcaaa
     4141 cgtgccgctg gacgatatgg cgaaactgtg cggttttccg ggcaagctgg gtatggacgg
     4201 cagcaaggtg tgggatgcgt tccacgcggg caggctgaaa gaaatccgca attattgcga
     4261 aaccgatgcc gtgaatacgt atttgatgta tctgcgtttt tgtctggtca gcggcagatt
     4321 cgacgcggac gaatacgaaa tggaaatcaa gcggatcaga aactatcttt ccgcccaaac
     4381 agaagataaa ccgcattggt cagaatttgc ccaagcgtgg aaatagaaaa cctgctgtcc
     4441 gaaggcggta cgcttgtgcc gccgtttcgg tttcagacgg catatggtgg attaaattca
     4501 aaccggtaca gcccgtacta tctgtactgt ctgtggcttc gtcgccttgt cctgattttt
     4561 gttaatccgc tttaaaagct gtatccgtgc tttctgaagc cttttccagt caaaccaaac
     4621 aatattgaaa gaaaaaaatg agcaaaaccg tccgttatct gaaagattac caaacgcctg
     4681 cctaccgcat ccttgaaacc gacctgcatt ttgatattgc cgaaccgcaa actgtcgtga
     4741 aatcccgttt gacggtcgag ccgcagaggg tgggggagcc gctggtgttg gacggttcga
     4801 cgaaactctt gtccgtcaaa atcaacggcg tggcggcgga ttatgtgttg gaaggcgaga
     4861 ctctgacgat tgcagacgtg ccgtccgaac gcttcaccgt cgaagtggaa accgagatcc
     4921 tgccggcgga aaacaaatcg ctgatggggc tgtatgcttc cggtggcaat ctgtttaccc
     4981 aatgcgagcc ggagggcttc cgcaaaatca cgttctacat cgaccgtccg gatgtgatgt
     5041 ccaaattcac gaccaccatc gttgcggaca aaaaacgcta tcccgttttg ctctccaacg
     5101 gcaacaaaat cgacggcggc gagtgttcag acggccgcca ttgggtgaaa tgggaagacc
     5161 cgtttgccaa accgagctat ctgtttgctt tggtcgcggg cgatttggcg gtcacggaag
     5221 actgtttcac cacgatgggc ggcagaaacg tcaaaatcga gttttacact gccgaggcgg
     5281 acaagcctaa ggtcggcttt gccgtggaat ccttgaaaaa cgcgatgaag tgggacgaaa
     5341 cgcgcttcgg tttggaatac gacttggata ttttcatggt cgtcgccgtg ggcgatttca
     5401 atatgggtgc gatggaaaac aaggggctga acatttttaa taccaagttc gtccttgccg
     5461 acagccgtac cgccaccgat accgattttg aaggcatcga atccgtggtc ggacacgagt
     5521 atttccacaa ctggacaggc aaccgcgtta cctgccgcga ttggttccag ctttcgctga
     5581 aagaagggtt gaccgtgttc cgcgaccaag aattttccgg cgaccgcgcc agccgcgccg
     5641 tgcgccgcat cgagaacatc cgcctgctgc gccagcacca gttccccgaa gacgcaggcc
     5701 cgaccgccca tccggtgcgc cccgccagct atgaggagat gaacaatttc tacaccatga
     5761 ccgtttatga aaaaggcgcg gaagtggtgc ggatgtatca caccttgctc ggcgaagagg
     5821 gcttccaaaa aggcatgaag ctctatttcc aacgacacga cgggcaggcc gtgacctgcg
     5881 acgatttccg cgcggcgatg gcggacgcga acggcatcaa tctcgaccag ttcgccttgt
     5941 ggtacagcca ggcgggtacg cccgtcttgg aagcggaagg tcgtctgaaa aacaatagtt
     6001 tcgagttaac catcaaacaa accgtgccgc ccacgcccga tatggcggac aagcagccga
     6061 tgatgattcc cgtcaaagtc gggctgctga accgcaacgg cgaagcggtg gcattcgatt
     6121 atcagggcaa acgcgcaacc gaagccgtgt tactgctgac cgaagccgaa cagaccttcc
     6181 agttcgaaag cgtaaccgaa gccgtcgttc cctcgctgct gcgcgggttc agcgcgccag
     6241 tgcatctgaa ctatccgtac agcaacgacg acctgctgct cctgctcgcc cacgacagcg
     6301 acgccttcac gcgctgggaa gccgcccaaa cgctctaccg ccgcgccgtc gccgccaacc
     6361 ttgccgcgct ttcagacggt attgaactgc cgaaacacga aaaactgctt gccgccgtcg
     6421 aaaaagtcat ttcagacgac ctcttagaca acgccttcaa agccctgctt ttgggcgtgc
     6481 cgtctgaagc cgagctgtgg gacggcacgg aaaacatcga cccgttgcgc taccatcagg
     6541 cgcacgaagc cttgttggat acaatcgccg tccgcttcct gccgaaatgg cacgaattga
     6601 accgtcaggc ggcgaagcag gaaaaccaaa gctacgagta cagccccgaa gctgccggct
     6661 ggcgcacgct gcgcaacgtc tgccgcgcct tcgtcctgtg cgccgacccc gcgcacatcg
     6721 aaaccgttgc cgaaaaatac ggcgaaatgg cgcaaaacat gacccacgaa tggggcatcc
     6781 tgtccgccgt taacggcaac gaaagcgata cgcgcaaccg cctgctggct cagtttgccg
     6841 acaagttttc agacgacgcg ctggtgatgg acaaatattt cgccctcgtt ggatcaagcc
     6901 gccgcagcga caccctgcaa caggttcaaa ccgccttgca gcatccgaag ttcagcctcg
     6961 aaaaccccaa caaagcccgc tcgctcatcg gcagcttcag ccgcaacgta ccgcattttc
     7021 acgcagaaga cggcagcggc taccgcttca tcgccgacaa agtcatcgaa atcgaccgct
     7081 ttaacccgca ggtcgccgcc cgcctagtgc aggcgttcaa tctctgcaat aagctcgaac
     7141 cgcaccgcaa aaacttggtg aaacaagcat tgcagcgcat tcgggcgcag gaaggattgt
     7201 cgaaagacgt gggcgaaatc gtcggcaaaa ttttggattg aggccgtcaa acagaaaaac
     7261 aatgccgtct gatatagtta cacacacgtt ttatcatcac ttccccatcg ttttattacg
     7321 caatggcaaa acggccgcaa agtcatatta attatagtgg attaacaaaa atcaggacaa
     7381 ggcgacgaag ccgcagacag tacagatagt ac
//
LOCUS       DAWGNT010000094         7344 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.094, whole genome shotgun sequence.
ACCESSION   DAWGNT010000094 DAWGNT010000000
VERSION     DAWGNT010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7344
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.094"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            190..393
                     /locus_tag="WHR98_001345"
     CDS             190..393
                     /locus_tag="WHR98_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308021.1"
                     /translation="MPSEACLVFRRHFLRLKQRIGNPALPVHGNLHLKTICIPNHTPI
                     PVSVICTLSVLGNHRFFAYNSRI"
     gene            420..1382
                     /locus_tag="WHR98_001346"
     CDS             420..1382
                     /locus_tag="WHR98_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEZ2308022.1"
                     /translation="MQYAKISGTGSYLPANRVSNDDLAQKVDTSDEWITARTGIKFRH
                     IAAENEKTSDLAAEAARRALDAAGLDSGEIDLIIVATATPDMQFPSTATIVQQKLGIT
                     NGCPAFDVQAVCAGFMYALTTANAYIKSGMAKNALVIGAETFSRIVDWNDRTTCVLFG
                     DGAGAVVLSAADKPGIIHSKLKADGNYLKLLNVPGQIACGKVSGSPYISMDGPGVFKF
                     AVKMLSKIADDVIEEAGYTAAQIDWIVPHQANRRIIESTAKHLGLSMDKVVLTVQDHG
                     NTSAASIPLALDTGIRSGQIKRGQNLLLEGIGGGFAWGAVLLQY"
     gene            1429..1800
                     /locus_tag="WHR98_001347"
     CDS             1429..1800
                     /locus_tag="WHR98_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HEZ2308023.1"
                     /translation="MKRQAFFKPIACAAFLSAVSLLLPVLGACYAILSLYAFALYGID
                     KRRAVRGKRRIPEHRLLLPALFGGWTGAYLGSRIFRHKTAKKRFAFMLFLTVTGNILA
                     TCILIDYFVPPELFVKLGQHL"
     gene            1826..2752
                     /gene="fabD"
                     /locus_tag="WHR98_001348"
     CDS             1826..2752
                     /gene="fabD"
                     /locus_tag="WHR98_001348"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEZ2308024.1"
                     /translation="MSFAFFFPGQGSQSLGMMNGFAEHAIVKNTFDEASAILGQDLWA
                     MINGSDAEIIGQTVNTQPIMLAAGVAVYRAYLEAGGKTPAAVAGHSLGEYTALVAAGA
                     LDFTDAVKLVRLRAELMQSAVPQGVGAMAAILGLEDGQVKAICAEAAQGEVVEAVNFN
                     SPGQVVIAGNAAAVERAMLAAKEAGAKRALPLPVSVPSHCSLMKPAADKLAEALKTVE
                     IKQPQIRVIHNADVAAYDDADKIKDALVRQLYSPVRWTETVNALVSDGIAESAECGPG
                     KVLAGLAKRINKAAACSALTDAGQIAAFIEAH"
     gene            2890..4755
                     /gene="msbA"
                     /locus_tag="WHR98_001349"
     CDS             2890..4755
                     /gene="msbA"
                     /locus_tag="WHR98_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A export permease/ATP-binding protein
                     MsbA"
                     /protein_id="HEZ2308025.1"
                     /translation="MIEKLTFGLFKKEDARSFMRLMAYVRPYKIRIVAALIAIFGVAA
                     TESYLAAFIAPLINHGFSAPAAPPELSAAAGIISTLQNWREQFTYMVWGTENKIWTVP
                     LFLIILVVIRGICRFTSTYLMTWVSVMTISKIRKDMFAKMLTLSSRYHQETPSGTVLM
                     NMLNLTEQSVSNASDIFTVLTRDTMIVTGLTIVLLYLNWQLSLIVVLMFPLLSLLSRY
                     YRDRLKHVISDSQKSIGTMNNVIAETHQGHRVVKLFNGQAQAANRFDAVNRTIVRLSK
                     KITQATAAHSPFSELIASIALAVVIFIALWQSQNGYTTIGEFMAFIVAMLQMYAPIKS
                     LANISIPMQTMFLAADGVCAFLDTPPEQDKGTLAPQRVEGRISFRNVDVEYRSDGIKA
                     LDGFNLDIRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDSIDIADIKLDCLR
                     AQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLFALQTANLQSLIDSSPLGLHQPIG
                     SNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGI
                     IVAHRLTTIEGADRIIVMDDGKIIEQGTHEQLMSQNGYYTMLRNISNKDAAVRTA"
     gene            4855..6420
                     /gene="guaA"
                     /locus_tag="WHR98_001350"
     CDS             4855..6420
                     /gene="guaA"
                     /locus_tag="WHR98_001350"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEZ2308026.1"
                     /translation="MTQDKILILDFGSQVTQLIARRVREAHVYCELHSFDMPLDEIKA
                     FNPKGIILSGGPNSVYESDYQADTGIFDLGIPILGICYGMQFMAHHLGGEVQPGNQRE
                     FGYAQVKTIDSELTRGIQDDTPNTLDVWMSHGDKVSKLPTGFTVIGDTPSCPIAMMEN
                     AEKQFYGIQFHPEVTHTKQGRALLNRFVLDICGAQPGWTMPNYIEEAVAKIREQVGSD
                     EVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGKMVMDMFARNLGVKVI
                     HVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEKKLTNAKWLAQGTIYPDVIES
                     AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRELGVALGLPREMVYRHP
                     FPGPGLGVRILGEVKKEYADLLRQADDIFIQELRNTTDENGTSWYDLTSQAFAVFLPV
                     KSVGVMGDGRTYDYVVALRAVITSDFMTAHWAELPYSLLGRVSNRIINEVKGINRVVY
                     DVSGKPPATIEWE"
     gene            6482..7228
                     /gene="fabG"
                     /locus_tag="WHR98_001351"
     CDS             6482..7228
                     /gene="fabG"
                     /locus_tag="WHR98_001351"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEZ2308027.1"
                     /translation="MSTQDLSGKIALVTGASRGIGAAIADTLAAAGAKVIGTATSESG
                     AAAISERLAQWGGEGRVLNSAEPETVENLIADIEKTFGKLDILVNNAGITRDNLLMRM
                     KEEEWDDIMQVNLKSVFRASKAVLRGMMKQRAGRIINITSVVGVMGNAGQTNYAAAKA
                     GLIGFSKSMAREVGSRGITVNCVAPGFIDTDMTRALPEETRQAFTAQTALGRFGDAQD
                     IADAVLFLASDQAKYITGQTLHVNGGMLMP"
BASE COUNT         1798 a         2299 c         1783 g         1464 t
ORIGIN      
        1 acggggatat tgaagtcaaa aaccttaaaa cagaaaatta cagcgggaag gcaagggaaa
       61 tcttgggaga ttcctaccct attgagcata tctctaaaaa tatttctaca attcaaaata
      121 taatttctga atttatgata caaaaacaaa caccggcacc aataatttga tggaaaacca
      181 acaatcaaaa tgccgtctga agcatgtttg gttttcagac ggcatttcct tcgcttaaaa
      241 cagcgtatcg gcaaccccgc cctgcctgtc cacggcaatc tgcatctgaa aaccatctgt
      301 atcccaaacc acacccccat ccctgtttcc gtcatttgca ccctgtccgt attgggcaat
      361 catcggtttt tcgcttacaa tagccgaatc tgaaccaact ctctaaaaag gccgttccca
      421 tgcagtatgc aaaaatttcc ggcacgggca gctatcttcc cgccaaccgc gtcagcaatg
      481 acgaccttgc ccaaaaggta gatacctctg acgagtggat taccgcgcgt acgggcatca
      541 agttccgcca tattgcagcc gaaaatgaga aaaccagcga tcttgccgcc gaagcagccc
      601 gccgcgcact ggatgcagcc ggattagaca gcggcgaaat cgatttaatt attgtggcga
      661 cggcaacgcc ggatatgcag tttccttcta ccgccaccat cgtccaacaa aaattgggca
      721 tcaccaacgg ctgccccgcg tttgacgtac aggcggtgtg tgcgggcttt atgtacgcgc
      781 tgaccacggc aaacgcctac attaaaagtg gcatggcgaa aaacgcgctg gtcatcggcg
      841 cggaaacctt cagccgcatc gtcgattgga acgaccgcac aacctgcgta ttgttcggcg
      901 acggcgcggg cgcggtggtt ttgagcgcgg cggacaaacc gggcatcatc cacagcaaac
      961 tcaaagccga cggcaattat ctgaaactct taaacgtccc cgggcaaatc gcctgcggca
     1021 aagtttccgg ttcgccgtac atttcgatgg acggtcccgg cgtgttcaag tttgccgtca
     1081 aaatgctgtc caaaatcgcc gatgacgtta tcgaagaagc cggttatacc gccgctcaaa
     1141 tcgactggat cgtgccgcat caggcaaacc gccgcattat cgaatcgacc gcgaaacatt
     1201 taggtttgag tatggacaaa gtcgtcctga ccgtccaaga ccacggcaac acgtccgccg
     1261 cctcgattcc gctggctttg gatacaggca tccgcagcgg acaaatcaaa cgcggtcaaa
     1321 acctgctgct cgaaggcata ggcggcggtt tcgcgtgggg cgcggtgctg ttgcaatatt
     1381 gaacccgatg ccgtctgaag caggctttca gacggcattt cccatatcat gaagcggcag
     1441 gctttcttca aaccgattgc gtgtgcggca tttctgtctg ccgtttcgct gctcctcccc
     1501 gtattgggcg cgtgttacgc aatattgtcc ctctatgcgt ttgcacttta cggcatcgac
     1561 aaacggcgtg ccgtgcgggg aaaacgccgc attcccgaac accgcctgct gctgcctgcc
     1621 ttgttcggcg gttggacggg cgcatacttg ggcagcagga tattcaggca taaaacggcg
     1681 aaaaagcgtt ttgcattcat gctttttctg accgttacag gcaatatcct ggcaacctgc
     1741 atcctgattg attatttcgt tccgcccgaa ctttttgtaa aactcgggca acatctctga
     1801 caatccaacc aaacaaagga ataccatgtc tttcgcattc ttcttccccg gacaaggttc
     1861 tcaaagcctc ggcatgatga acggctttgc cgaacacgcc atcgtcaaaa atacctttga
     1921 cgaagcctcc gccatattgg ggcaggacct gtgggcgatg attaacggca gcgatgccga
     1981 aatcatcgga caaaccgtca atacccaacc catcatgctc gccgccggcg ttgccgttta
     2041 ccgcgcctat ttggaagctg gcggcaaaac gcctgccgcc gttgccggac acagcctcgg
     2101 cgaatatacc gcgcttgtcg ccgccggcgc attggatttt acagacgccg tcaaactcgt
     2161 acgcctgcgc gccgaactga tgcagtccgc cgtaccgcaa ggcgtaggcg caatggcggc
     2221 gattctcggc ttggaagatg ggcaggttaa agccatttgc gccgaagccg cccaaggcga
     2281 agtggttgaa gccgtcaact tcaactcgcc cgggcaagtc gtgattgcag gcaatgccgc
     2341 cgccgtcgag cgcgctatgc ttgccgccaa agaagccggt gccaaacgcg ccctgccgct
     2401 gcccgtgtcc gtaccttccc attgcagcct catgaaaccc gccgccgaca aacttgccga
     2461 agccttgaaa accgttgaaa tcaagcagcc gcaaatccgc gttatccaca acgccgacgt
     2521 tgccgcctac gatgatgccg acaaaatcaa agacgcgctc gtccgccagc tttacagccc
     2581 cgtacgctgg acggaaaccg tcaacgccct cgtttcagac ggcattgccg aatccgccga
     2641 atgcggcccg ggcaaagttc tggcaggtct ggcaaaacgc atcaacaaag ccgccgcgtg
     2701 cagcgcactg accgatgccg gacagattgc cgcctttata gaagcacact gacttcgttc
     2761 tgtaaaaagc agcctgccct cttcaggctg cttttcacgt ccgaacggcg gcagccccat
     2821 atttacgcta taatccatcc cgaccaaacc accgacagcg gctgccgttg cagttcccgc
     2881 cctaccgata tgatagaaaa actgactttc ggactgttta aaaaagaaga cgcgcgcagc
     2941 tttatgcgcc tgatggcata cgtccgcccc tacaaaatcc gcatcgttgc cgccctgatt
     3001 gccattttcg gcgttgccgc caccgaaagc taccttgccg ccttcatcgc ccccctgatt
     3061 aaccacggct tttccgcacc cgccgcgccg cccgagctgt ctgccgccgc cggcatcatt
     3121 tccaccctgc aaaactggcg cgaacagttt acctatatgg tttgggggac ggaaaacaaa
     3181 atctggaccg tccccctctt cctcatcatc ctcgtcgtca tccgtggcat ctgccgcttt
     3241 accagcacct atctgatgac ttgggtctcc gtgatgacca tcagcaaaat ccgcaaagat
     3301 atgtttgcca aaatgctgac cctttcctcc cgctaccatc aggaaacgcc gtccggcacc
     3361 gtactgatga atatgctcaa cctgaccgaa cagtcggtca gcaacgccag cgacatcttc
     3421 accgtcctca cgcgcgacac gatgatcgtt accggcctga ccatcgtcct gctttacctc
     3481 aactggcagc tcagcctcat cgtcgtcctg atgttccccc tgctctccct gctctcgcgc
     3541 tactaccgcg accgtctgaa acacgtcatt tccgactcgc aaaaaagcat aggcacgatg
     3601 aacaacgtga ttgccgaaac ccatcaggga caccgcgtcg tcaagctgtt caacgggcag
     3661 gcgcaggcgg caaaccggtt cgacgcggtc aaccgcacca tcgtccgcct cagcaaaaaa
     3721 atcacgcagg caacggcggc acattccccg ttcagcgaac tgatcgcctc gatcgccctc
     3781 gccgtcgtca tcttcatcgc cctgtggcaa agccaaaacg gctacaccac catcggcgaa
     3841 tttatggcat tcatcgtcgc gatgctgcaa atgtacgccc ccatcaaaag ccttgccaac
     3901 atcagcatcc ctatgcagac gatgttcctc gccgccgacg gtgtatgtgc atttctcgac
     3961 accccgcccg aacaggacaa aggcacgctc gcgccgcagc gtgtcgaagg gcgcatcagc
     4021 ttccgcaacg tcgatgtcga ataccgttca gacggcatca aagccctcga cggcttcaac
     4081 ctcgacatca gacaaggcga acgcgtcgcc ctggtcggac gttccggcag cggcaaatcc
     4141 accgtcgtca acctgctgcc ccgctttgtc gaaccgtctg ccggcaacat ctgcatagac
     4201 agtatcgaca tcgccgacat caaactcgac tgcctgcgcg cccaattcgc cctcgtctcc
     4261 caagacgtat tcctgtttga cgataccctt tttgaaaacg tccgatatag ccgtcccgac
     4321 gcaggcgaag ccgaagtcct gttcgccctc caaaccgcca acctgcaaag cctgattgac
     4381 agctccccgc tcggactgca ccagcccatc ggatcgaacg gcagcaactt atccggcgga
     4441 cagcggcaac gcgtcgccat tgcccgcgcc attttgaaag acgcgccgat attattattg
     4501 gacgaagcca ccagcgcatt agacaacgaa tccgaacgcc tcgtccaaca agcgctcgaa
     4561 cgcctgatgg aaaaccgcac cggcatcatc gtcgcccacc gcctgaccac catcgaaggg
     4621 gccgaccgca tcatcgtgat ggacgacggc aaaatcatcg aacaaggcac acacgaacaa
     4681 ctgatgtccc aaaacggcta ctacacaatg ttacgcaata tctcaaacaa agatgccgcc
     4741 gtccggacgg cataaacaaa atgccgtccg aaatggtaca atcgccccga ccctttcaga
     4801 cggcatcata tccgccgacc catccgatta tcttcaatca ctgtaaaacc cattatgacc
     4861 caagacaaaa tcctcatcct tgacttcggt tcgcaagtta cccagctcat cgcccgccgc
     4921 gtgcgcgaag cccacgttta ctgcgagctg cattccttcg atatgccttt ggacgaaatc
     4981 aaagccttca accccaaagg catcatcctt tccggcggcc ctaattccgt ttacgaatcc
     5041 gactatcaag ccgataccgg tatctttgac ttgggcattc cgattttggg catttgctac
     5101 ggcatgcaat ttatggcgca ccacttgggt ggtgaagtgc aacccggcaa ccagcgcgaa
     5161 ttcggttacg cgcaagtcaa aaccatcgac agcgagctga cacgcggcat tcaagacgat
     5221 acgccaaaca cgctcgacgt atggatgagc cacggcgata aagtttccaa actgcctacc
     5281 ggtttcaccg tcatcggcga cacgccgtcc tgcccgattg ccatgatgga aaacgccgaa
     5341 aaacaattct acggcatcca attccacccc gaagtaaccc acaccaaaca aggccgcgcc
     5401 ctgttgaacc gctttgtttt ggatatttgc ggcgcacaac cgggctggac aatgccgaac
     5461 tacatcgaag aagccgttgc caaaatccgc gaacaagtcg gcagcgacga agtgatttta
     5521 ggcttgtccg gcggcgtgga ctcttccgta gccgccgcgc tgatccaccg cgccatcggc
     5581 gaccaactga cctgcgtgtt cgtcgatcac ggtttgttgc gcctgaacga aggcaaaatg
     5641 gtgatggata tgttcgcccg caacttgggt gtgaaagtga ttcacgtcga tgccgaaggg
     5701 cagtttatgg cgaaactcgc cggcgttacc gaccctgaga aaaaacgcaa aatcatcggc
     5761 gcggaattta tcgaagtatt tgatgccgaa gagaaaaaac tcaccaacgc caaatggctg
     5821 gcgcaaggca cgatttaccc cgacgtaatc gaatccgcag gcgcgaaaac caaaaaagcc
     5881 cacgccatca aatcccacca caatgtcggc ggcctgcctg aaaacatgaa gctcaagctg
     5941 cttgagccgt tgcgcgactt gtttaaagac gaagtgcgcg aactgggcgt tgctttgggt
     6001 ctgccgcgcg aaatggtgta ccgccatccg ttccctggcc ccggtttggg cgtgcgcatc
     6061 ttgggcgaag tgaaaaaaga atacgccgac ttattgcgtc aagcagacga tattttcatc
     6121 caagaattac gcaacaccac cgacgaaaac ggcacatctt ggtacgacct gaccagccaa
     6181 gccttcgccg tgttcctgcc tgtgaaatcc gtcggcgtaa tgggcgacgg acgcacttac
     6241 gactacgtcg tcgcactgcg cgcagtcatc accagcgact tcatgaccgc acactgggca
     6301 gaactgcctt actcactgct cggacgcgtg tccaaccgca tcatcaacga agtcaaaggc
     6361 atcaaccgcg tggtgtacga tgtcagcggc aaaccgcctg ccaccatcga gtgggaataa
     6421 ccagcaaaca gggctgcacc gtccggcgca gtctttcgat tatcggaaaa aaggaaaaaa
     6481 tatgagcaca caagatttaa gcggcaaaat cgctttggta accggcgcat cgcgcggtat
     6541 cggtgcagca attgccgaca cactggcggc agccggtgcc aaagtcatcg gtacggcgac
     6601 cagtgagagc ggtgcggcgg cgattagcga gcggttggcg caatggggcg gcgaaggccg
     6661 cgtattaaat tccgccgaac ccgaaaccgt cgaaaacctg attgccgaca tcgaaaaaac
     6721 gttcggcaaa ctcgatattc tggtcaacaa cgccggcatc acccgcgaca acctcctgat
     6781 gcgcatgaaa gaagaagagt gggacgacat catgcaggtc aacctcaaat ccgtgttccg
     6841 cgcttctaaa gccgtcttgc gcggcatgat gaagcagcgc gccggccgta tcatcaacat
     6901 cacatccgtc gtcggcgtga tgggcaatgc cggtcaaacc aactatgccg cggcaaaagc
     6961 aggcttaatc ggtttctcca aatccatggc gcgcgaagtc ggcagccggg gcattaccgt
     7021 caactgcgtc gcccccggct ttatcgatac cgatatgacc cgcgccctgc cggaagaaac
     7081 ccgccaagcc tttaccgccc aaaccgcctt gggcagattc ggcgacgcgc aagacattgc
     7141 cgatgcggtt ttgttcttgg cttccgatca ggcaaaatac attaccggtc aaacgctgca
     7201 cgtcaacggc ggcatgctga tgccctgacg ggcagccgta ccgacaatgc cgtctgaagc
     7261 cctttcagac ggcatttgca ttcccaaaca aaatgaacac acgccacact ccgccctgcc
     7321 cctgcggttc aggcacaagc tgag
//
LOCUS       DAWGNT010000095         7309 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.095, whole genome shotgun sequence.
ACCESSION   DAWGNT010000095 DAWGNT010000000
VERSION     DAWGNT010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7309
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.095"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            66..326
                     /locus_tag="WHR98_001352"
     CDS             66..326
                     /locus_tag="WHR98_001352"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308028.1"
                     /translation="MENAAASPAGRFRRHSRRRKCPTLKAQTHTKNRMPAPATIRQIP
                     LFFPNRLQVSPIRRVMPPPPFKGNARVNGFAVGKAAGYRYVS"
     gene            433..957
                     /gene="nspA"
                     /locus_tag="WHR98_001353"
     CDS             433..957
                     /gene="nspA"
                     /locus_tag="WHR98_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein NspA"
                     /protein_id="HEZ2308029.1"
                     /translation="MKKALATLIALAIPAAALAEGASGFYVQADAAHAKASSSLGSAK
                     GFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKPYLG
                     ARLSLNRASVDLGGSDSFSQTSTGLGVLAGVSYAVTPNVDLDAGYRYNYIGKVNTVKN
                     VRSGELSAGVRVKF"
     gene            1093..1482
                     /locus_tag="WHR98_001354"
     CDS             1093..1482
                     /locus_tag="WHR98_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEZ2308030.1"
                     /translation="MSKTIIHTDKAPAAIGAYSQAVRAGDTVYMSGQIPLDPATMTVV
                     GNGDFRAEVRQVFQNLQAVAEAAGGTLADIVKLNAYLTDLGNFAVFNEVMAEFIAEPF
                     PARAAVGVASLPKGVQVEAEAVLVLNA"
     gene            1560..2390
                     /locus_tag="WHR98_001355"
     CDS             1560..2390
                     /locus_tag="WHR98_001355"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="symmetrical bis(5'-nucleosyl)-tetraphosphatase"
                     /protein_id="HEZ2308031.1"
                     /translation="MAHYAIGDIQGCFDELTALLGKIGFNHGTDTLWLTGDIVNRGPK
                     SLETLQFCIRHENSVQIVLGNHDLHLLAVGCGEGAPKRSDTIEPILKHPDGKKMLDWL
                     RAQPLLIREGSRVMVHAGILPQWRIAKAESLAREAEAELRGKKHVKFFSKMYGNKPAA
                     WDEGLEGYARLRFIVNAFTRMRALTFKNELDFDYKSTVKKMPPYLRPWFKAPDRQNLD
                     RTIIFGHWSSLGYTNADNVISLDTGALWGGQLTAVNLETEEITQVQAAGGIDWKSFAK
                     "
     gene            2405..3862
                     /locus_tag="WHR98_001356"
     CDS             2405..3862
                     /locus_tag="WHR98_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEZ2308032.1"
                     /translation="MHKILPIAHVLSRLGMLFSFILLIPAALSYAFSDGAYTAFATTA
                     TVTLSGSCIVRLATLRFRRELRPRDGFTLVLMLWLAFAAMAAMPMYLYFPNMGFTDAF
                     FESMSGLTTTGATVIPHVDGLAPSVNFWRHMLNWLGGMGIIVLAVAILPMLGVGGTQL
                     FKAEIPGIDKESKMSPRISQVAKKLWFGYTLITILAAACLHFAGMSWFDAVCHAMATL
                     SLGGFSTHDASIAYYNSPLIEAVIIVFTIVGGINFASHFAALNSRSLKTYWKDEECRT
                     MLLLLSGSILTAALYLWHTGYYAGFTESLRYTAFNFVSIGLANGLANTDFAQWPLLIS
                     LWMFFLANILANSGSTGGGIKTIRALVLFKFSLREMMVLLHPKAVRTVKISGKAIPDR
                     LALTVMSFIFIYFMTVVLFSFLLMASGMEFTTAFTAVIACITNAGPGLGEVGPAGNYA
                     GLDVMQKWICVTAMLLGRLEIFTVFILFTPAYWKK"
     gene            complement(3903..4292)
                     /locus_tag="WHR98_001357"
     CDS             complement(3903..4292)
                     /locus_tag="WHR98_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308033.1"
                     /translation="MWKISKENCEDLGFAIVCMFYDAINLSEFKLWLDIVVRDTPIDT
                     IPLYIFDLIDFDKSIGEIYDVIGVVNYGYISNDQKNALTGIAFLRGIDVYDPPISKEK
                     ALKALEKYPEIYQRFQHFFPFVELPLL"
     gene            complement(4474..4875)
                     /locus_tag="WHR98_001358"
     CDS             complement(4474..4875)
                     /locus_tag="WHR98_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308034.1"
                     /translation="MKIKPLQFSNNNHRFYVDKICVTEQDVNILASDRNYELNIEIFI
                     DNIIHFQITDESYKVKFSEYLFENKEKNDWDRNPAINYFFEIIDDSYMDWLKEESFDF
                     FEKKYYKAYIFFFSDSVIEVISSTEPVFYSK"
     gene            complement(5318..5854)
                     /locus_tag="WHR98_001359"
     CDS             complement(5318..5854)
                     /locus_tag="WHR98_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="suppressor of fused domain protein"
                     /protein_id="HEZ2308035.1"
                     /translation="MDYNQTVLSHLQNFWKHHDIKGFTWALGRIVEELPDFQVFQVIP
                     NHEDEPWVYVSSGIGQFLEQEFFIISPFETPEHIETLAMLASASMHYPDRFQLGKTVN
                     IGRPWVEQSSFQHFLISLPYPYGQELEYMDNVRFFWLLPITQPERLFLNTHSVEDLET
                     RFDELGIDYLDINRASVI"
     gene            complement(5935..6480)
                     /locus_tag="WHR98_001360"
     CDS             complement(5935..6480)
                     /locus_tag="WHR98_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004463655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="suppressor of fused domain protein"
                     /protein_id="HEZ2308036.1"
                     /translation="MIIVEHLEHYLGEIESGIKCLDRRYHLSVSVFPSQPYKGVTTFS
                     TLGLNRYDLNYKSRFELIFTCSEEWNKENIAAFLSGVAEYLIDNRQPILRGEIIQLPR
                     VIIEGSKMDALYVSAPFYFDDDFQVCYGEHYNIVFPLLVPLYKQEAELVEKKGWNAFE
                     QFLLDNEVDNLSDMNRKPFAW"
     gene            complement(6467..6619)
                     /locus_tag="WHR98_001361"
     CDS             complement(6467..6619)
                     /locus_tag="WHR98_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308037.1"
                     /translation="MDAKSLDGKIKMPLYFSDGISVNKKVGIGAQNSLRLAGIGMKSL
                     RKNDYS"
     gene            complement(6601..6873)
                     /locus_tag="WHR98_001362"
     CDS             complement(6601..6873)
                     /locus_tag="WHR98_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308038.1"
                     /translation="MMSVKELFKVILDENKDFPIRTIHRTPMGILPKPVALSIVQYEN
                     DPGFYLFYLDETGQEQTDTYHDTLDSAFEQAEFEFGISKEEWMQSP"
     gene            complement(6877..>7309)
                     /locus_tag="WHR98_001363"
     CDS             complement(6877..>7309)
                     /locus_tag="WHR98_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308039.1"
                     /translation="RLKKGDTLLSESGAKQTVQNITLKQQPLKAYNLTVADWHTYFVK
                     GNQAETEGVWVHNSCPPKRAPEYHAGTVSESNFLNAAEKWLGENYKSYPNGRYVSQDG
                     MRQVRYGYHETNSSTHHGHFESYDKPNGRVIENSAVTIIRD"
BASE COUNT         1905 a         2026 c         1481 g         1897 t
ORIGIN      
        1 cgcaaacaaa tcggcggccg cccgggaaaa cccgccccga acgcgtccgg aaaatatgct
       61 tatcgatgga aaacgcagcc gcatcccccg ccgggcgttt cagacggcac agccgccgcc
      121 ggaaatgtcc gacgcttaag gcacagacgc acacaaaaaa ccgtatgcct gcacctgcaa
      181 caatccgaca gataccgctg ttttttccaa accgtttgca agtttcaccc atccgccgcg
      241 tgatgccgcc accaccattt aaaggcaacg cgcgggttaa cggctttgcc gtcggcaaag
      301 cagccggata ccgctacgta tcttgaagta ttgaaaatat tacgatgcaa aaagaaaatt
      361 taagtataat acagcaggat tctttaacgg attcttaaca atttttctaa ctgaccataa
      421 aggaaccaaa atatgaaaaa agcacttgcc acactgattg ccctcgctat cccggccgcc
      481 gcactggcgg aaggcgcatc cggcttttac gtccaagccg atgccgcaca cgcaaaagcc
      541 tcaagctctt taggttctgc caaaggcttc agcccgcgca tctccgcagg ctaccgcatc
      601 aacgacctcc gcttcgccgt cgattacacg cgctacaaaa actataaagc cccatccacc
      661 gatttcaaac tttacagcat cggcgcgtcc gccatttatg acttcgacac ccaatcgccc
      721 gtcaaaccgt atctcggcgc gcgcttgagc ctcaaccgcg cctccgtcga cttgggcggc
      781 agcgacagct tcagccaaac ctccaccggc ctcggcgtat tggcgggcgt aagctatgcc
      841 gttaccccga atgtcgattt ggatgccggc taccgctaca actacatcgg caaagtcaac
      901 actgtcaaaa acgtccgttc cggcgaactg tccgccggcg tgcgcgtcaa attctgatat
      961 gcgccttatt ctgcaaaccg ccgagccttc ggcggttttg ttttctgcca ccgcaactac
     1021 acaagccggc ggttttgtac gataatcccg aatgctgcgg cttctgccgc cctatttttt
     1081 gaggaatccg aaatgtccaa aaccatcatc cacaccgaca aagcccccgc cgccatcggc
     1141 gcgtacagcc aagccgtccg agcaggcgac accgtttaca tgagcggtca aatccccctc
     1201 gatcccgcca cgatgaccgt cgtcggcaac ggcgatttcc gcgccgaagt gcgccaagtg
     1261 ttccaaaacc tgcaagccgt cgccgaagcg gcaggcggca cgctggccga catcgtcaaa
     1321 ctcaacgcct acctgaccga cttgggcaat tttgccgtct tcaacgaagt catggcggaa
     1381 tttatcgccg agcccttccc cgcccgcgcc gccgtcggcg ttgcctcgct gcccaaaggc
     1441 gtgcaggtcg aagccgaagc cgtcctcgtt ttgaacgcat aattccacgt tcggactgca
     1501 tgatatttca aaaccatgcc gtccgaaccg caacactttc ccacttcaca acatctgcaa
     1561 tggcacatta cgcaatcggc gacatacaag gctgtttcga cgaactgacc gcgctgctcg
     1621 gcaaaatcgg tttcaaccac ggcacggaca ccctctggct gacgggcgac atcgtcaacc
     1681 gcggcccgaa atccctcgaa acgctgcaat tctgcatccg gcacgaaaac agcgtgcaaa
     1741 tcgtcctcgg caaccacgac ctgcacctgc tcgctgtcgg ctgcggcgaa ggcgcgccca
     1801 aacgcagcga cacaatcgaa cccatactca aacaccccga cggaaaaaaa atgctcgact
     1861 ggctgcgtgc gcaaccgctg ttgatacgcg agggcagccg cgtgatggta cacgccggca
     1921 tcctgccgca atggcgcatc gccaaagccg aatcgctcgc tagagaagcc gaagccgaac
     1981 tgcgcggcaa aaaacacgtc aaattcttct ccaaaatgta cggcaacaaa ccggccgcgt
     2041 gggacgaagg tttggaaggc tatgcccgcc tgcgcttcat cgtcaacgcc ttcacgcgga
     2101 tgcgcgccct gacctttaaa aacgaactgg atttcgacta caaatccaca gtgaaaaaaa
     2161 tgccgcctta cctgcgcccg tggttcaaag cccccgaccg gcaaaacctc gaccgcacca
     2221 tcatcttcgg acactggtcc tcgctgggct acacgaatgc cgacaacgtc atctcgctgg
     2281 acaccggcgc gctgtggggc ggacagctga ccgccgtcaa cctcgaaacg gaagaaatta
     2341 cccaagtcca agccgccggc ggcatagact ggaaaagctt cgcaaaataa cggaccgccc
     2401 cactatgcac aaaatcctgc ccatcgccca cgtcctctcc cgactgggta tgctgttttc
     2461 ctttatcctg ctgatacccg ccgccctctc ctacgccttt tcggacggcg cgtacaccgc
     2521 cttcgccacc accgcgaccg ttaccctttc cggctcgtgc atcgtccggc tcgccaccct
     2581 ccggttcagg cgcgaactgc gcccgcgcga cggcttcacc ctcgtcctga tgttgtggct
     2641 ggcgtttgcc gctatggcgg cgatgccgat gtacctgtat ttcccgaata tgggctttac
     2701 cgacgcattt tttgaatcga tgtcgggact gaccaccacc ggcgcgaccg tcatccccca
     2761 cgtcgacggg ctcgccccct ccgtcaactt ttggcggcat atgctcaact ggctgggcgg
     2821 gatgggcatc atcgtccttg ccgtcgccat cctgcctatg ctcggcgtag gcggcacgca
     2881 gttattcaaa gccgaaatcc ccggcattga caaagaaagc aaaatgtcgc cgcgcatttc
     2941 ccaagtggcg aaaaaactct ggttcggcta caccctgatc accatcctcg cggcagcctg
     3001 cctgcatttt gccgggatga gctggttcga tgccgtctgt cacgcaatgg cgaccctctc
     3061 gctgggcgga ttttccaccc acgatgccag catagcttat tacaactccc ccctcatcga
     3121 ggcggtcatc atcgttttca ccattgtcgg cggcatcaat tttgccagcc atttcgccgc
     3181 cctcaacagc cgcagcctca aaacctattg gaaagacgaa gaatgccgga cgatgctgct
     3241 gctgctctcc ggcagcatcc ttaccgccgc cctgtacctg tggcacaccg gctattacgc
     3301 cggttttacc gaatccctgc gctacaccgc cttcaacttc gtctccatcg gactggcaaa
     3361 cgggctggcc aacaccgact tcgcacaatg gccgctcctg atttccctgt ggatgttttt
     3421 cctcgccaac atcctcgcca actccggctc gaccggcggc ggcatcaaaa ccatacgcgc
     3481 cctcgtcctg ttcaaattca gcctgcgcga aatgatggtg ctgctgcacc ccaaagccgt
     3541 ccgcaccgtc aaaatcagcg gcaaagccat acccgaccgc ctcgcgctga ccgttatgtc
     3601 cttcatcttc atctacttta tgaccgtcgt cctcttcagc ttcctgctga tggcgagcgg
     3661 tatggaattt accaccgcct tcaccgccgt catcgcctgc atcaccaacg ccggccccgg
     3721 cctgggcgaa gtcgggcccg ccggcaatta cgccggtttg gacgtgatgc agaaatggat
     3781 ctgcgttacc gccatgctct tgggcaggct ggaaatcttc accgtcttca tcctcttcac
     3841 ccccgcctac tggaagaaat aaaaaatgcc gtctgaaaac ttttcagacg gcatcttgtc
     3901 ctttaaagaa gcggaagctc tacaaaagga aagaaatgct gaaacctctg ataaatttca
     3961 ggatatttct ctaaggcttt taatgctttt tcttttgaaa taggcggatc atagacatct
     4021 atccccctta agaaggcaat gcccgttaat gcattttttt gatcatttga aatgtaacca
     4081 taattaacga ctccaattac atcataaatt tcccctatac tcttatcaaa atcaatcaaa
     4141 tcaaaaatat acaatggaat tgtatcaata ggagtatctc tgacaactat atccaaccat
     4201 aatttaaatt cagaaagatt aatagcatca tagaacatac agactattgc aaatcctaaa
     4261 tcttcacaat tttctttact aattttccac ataattattt acctttatcc attgcttccc
     4321 aaccgataca tccggtattt tagcttctcc ttttccgtca aacactcctt tggttacctg
     4381 ctttgtgtca aaaataccgt ctgaaagccg aatattgttt cagacggtat tttgattgtt
     4441 gggtttttaa tcagagcttt gtttgataat ttgttatttt gaataaaata caggttctgt
     4501 cgagctgata acttctatta cagaatcgct aaaaaagaaa atataagcct tataatattt
     4561 cttttcaaaa aaatcaaaac tttcttcttt caaccagtcc atataactat catctattat
     4621 ctcgaaaaaa taatttatag caggatttct atcccaatca tttttttctt tattttcaaa
     4681 taaatattct gaaaatttta ctttataaga ttcatccgtt atttgaaaat gaattatatt
     4741 gtcaataaat atttcaatat ttaattcata atttcggtcg gatgccaaaa tgttcacatc
     4801 ttgttcggta acacaaattt tgtccacata aaatctgtga ttattgttag aaaattgtaa
     4861 tggtttaatc ttcacaatcg ttttccatat ctaatttttg ttttcttatt gccctgccgg
     4921 ataaagcagg tctgcctccg tactgtctat cctcacattt actttcctgc catcggcttt
     4981 tatctccccg gttttaccgt ttttgccaac tttgcggctt tggcggcggc aatgttgaag
     5041 gcggcttcga cggtttcggc ggcattgggg ttgacccgta ctcatccgca aacggcaaca
     5101 cgacggacgg tgtttgcttt tcagccgtct gccgttttga ccaaggtgct gccgtggaaa
     5161 gagcaggtgt aggatttttg aagaactcag ttctcaatat cctgcttcaa atgaaggaaa
     5221 tgccgtctga aaattaaaca cggtttcaga cggcattttg attgttggat ttccaatcca
     5281 acctacgctt gctgaaagat ttcaaacaac ataaatatca aataacgctt gcacgattta
     5341 tatccaaata atcaatacct agctcatcaa atctcgtttc caagtcttct actgaatgag
     5401 tattcaagaa aagtctttct ggctgggtaa ttggcaataa ccagaaaaat cggacattat
     5461 ccatatattc caattcttgc ccataaggat aaggcagaga aatcagaaaa tgctggaagg
     5521 atgattgctc aacccacggt ctgccgatat tgaccgtttt ccctaattga aatcgatcgg
     5581 gataatgcat acttgcagat gccagcattg ccaaggtctc aatatgttca ggtgtttcaa
     5641 atgggctgat gataaaaaac tcctgctcta aaaattgacc tattccagag ctgacataaa
     5701 cccaaggctc atcttcatga ttaggaatca cttggaaaac ttggaaatcg ggaagttctt
     5761 caacaatcct tcctaaagcc caagtaaatc ctttaatatc atgatgtttc caaaaatttt
     5821 gcaaatgaga taaaacagtt tggttatagt ccatgctttt tagcctgttt tcaaaggtcg
     5881 cctgaaacct gaaacaaggt ttttcagacg gcattgaccg tttgaagaag gtatttacca
     5941 agcaaacggt ttccgattca tatccgaaag gttgtcaact tcattatcca gcaagaactg
     6001 ctcaaaagca ttccaaccct ttttttccac caattctgct tcctgtttat acaacgggac
     6061 aagcaaaggg aaaacgatat tgtagtgttc gccataacag acctgaaaat catcgtcgaa
     6121 ataaaatggg gcggaaacat acagtgcatc cattttgcta ccttcgataa ttaccctggg
     6181 taattgaata atttcacctc ttaaaatagg ttgtctattg tcaatcaaat attcagccac
     6241 tcctgataga aaagctgcaa tattttcttt attccattct tcagaacagg taaaaattaa
     6301 ttcaaaccta ctcttatagt tcaagtcata tcgattcaag cctaaagtag aaaaagtagt
     6361 taccccttta tatggttgtg atgggaagac ggaaacgctg agatgataac gtcgatccaa
     6421 gcattttata ccgctttcga tttcacccaa ataatgttct aaatgttcaa ctataatcat
     6481 tttttcttaa agatttcatc cctatcccgg caagacgtag gctgttttgg gctccaatac
     6541 cgactttttt attgacggaa atgccgtctg aaaaataaag cggcatcttg attttgccgt
     6601 ctaaggactt tgcatccatt cctctttgct gattccaaat tcaaattcag cctgttcaaa
     6661 tgccgaatct aatgtgtcat gataagtatc cgtttgttcc tgaccggtct catccaaata
     6721 aaacaaataa aatcccgggt cattttcata ttgaacaata cttaaagcaa caggtttggg
     6781 aagtatcccc atcggggtac gatgaatcgt tctaatagga aaatctttat tttcatctaa
     6841 gatgactttg aataattctt ttacactcat cattcttcaa tcccgaataa ttgttaccgc
     6901 actattttct attacacgtc cattaggttt gtcatatgat tcaaaatgac catgatgcgt
     6961 agatgaattt gtttcatgat aaccatatcg tacctgccgc attccatctt gtgatacata
     7021 tcgaccattt ggatatgact tatagttttc ccctagccat ttctcagctg catttaaaaa
     7081 attagattca gatacagttc ctgcatggta ttcgggagct cttttgggag gacaagaatt
     7141 atgaacccaa accccttccg tttccgcctg attaccctta acgaagtaag tatgccaatc
     7201 ggcaacggtc agattgtagg ctttgagcgg ctgctgtttg agagtaatgt tttgaaccgt
     7261 ctgttttgca ccgctttcgg aaagcagggt gtcgcctttt ttcagacga
//
LOCUS       DAWGNT010000096         7241 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.096, whole genome shotgun sequence.
ACCESSION   DAWGNT010000096 DAWGNT010000000
VERSION     DAWGNT010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7241
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.096"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            191..1726
                     /locus_tag="WHR98_001364"
     CDS             191..1726
                     /locus_tag="WHR98_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEZ2308040.1"
                     /translation="MSDSKTKERATFGTRRAFMIAAIGSAVGLGNIWRFPYIAFENGG
                     GAFILPYLVALLTAGIPLLLLDYAIGHRYRGSAPLAFRRLGRWFEPVGWWNVMTNIVI
                     CIYYAVIIGWAASYTYYSVNAAWGADPQGFFFKDFLQMAGPEALGLDFVGKVAGPLAG
                     VWVFTAAIMALGVQKGVARASSFFMPLLLVMFLIMVGISLTLPGAAKGLDALFTPDWS
                     KLADSKVWVAAYGQIFFSLSICFGIMVTYSSYLKKKTDLGGTGLVVGFANSSFELLAG
                     IGVFAALGFMAQAGGKAVNEVASGGIGLAFIAFPTIINQAPMGWLIGILFFGSLVFAG
                     VTSMISILEVIVAAIQDKLNIGRVNATLLVCIPMGIVSTLLFGTATGLPVLDVMDKFV
                     NTYGIVAAGFVYVAAIIISGRLPELRKHLNALSSIRIGGLWTVCVVVTVVMLGYMLFK
                     DTSGLMEKNYEGYPDGFLSIFGWGMSAALVVFGLLLSLLPWKHGQDFNVKDEHEHEQG
                     EEK"
     gene            1723..1815
                     /locus_tag="WHR98_001365"
     CDS             1723..1815
                     /locus_tag="WHR98_001365"
                     /inference="COORDINATES: protein motif:HMM:NF033493.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HEZ2308041.1"
                     /translation="MSTSAIVMMIVSIVIIWGGLLLSLLRLPNE"
     gene            complement(1851..3095)
                     /gene="lysA"
                     /locus_tag="WHR98_001366"
     CDS             complement(1851..3095)
                     /gene="lysA"
                     /locus_tag="WHR98_001366"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEZ2308042.1"
                     /translation="MTLFCEQVPYPRLAEAFGTPLYVYSQSALTEAFEHYQTAFAELS
                     PLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAE
                     IEFALNAGVKCFNMESIPEIDRIQKVAARLGKTAPVSLRVNPDVDAKTHPYISTGLKA
                     NKFGIAYADALEAYRHAAQQPNLKIIGIDCHIGSQLTDLSPLVEACERILILVDALAA
                     EGIVLEHLDLGGGVGIVYQNEKVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGA
                     LLTRVEFVKYGEEKNFVMVDAAMNDLMRPALYDAYHHIEAVEPKNIAPLTANIVGPIC
                     ETGDFLGKDRTIACEEGDLLLIRSAGAYGASMASNYNARNRAAEVLVNGGGYKLIRRR
                     ETLEQQMANELACLQAEHQNAV"
     gene            complement(3106..3276)
                     /locus_tag="WHR98_001367"
     CDS             complement(3106..3276)
                     /locus_tag="WHR98_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEZ2308043.1"
                     /translation="MKYGVFFAAATALLLSACGYKGDLYLPKEGDKARFGVIQTGLQL
                     QGKPQSAPPTQK"
     gene            3347..3670
                     /gene="cyaY"
                     /locus_tag="WHR98_001368"
     CDS             3347..3670
                     /gene="cyaY"
                     /locus_tag="WHR98_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HEZ2308044.1"
                     /translation="MMTESEFIRASEALFEHIEDQIDENGWDFDCRFAGNVLTIEAGD
                     GTQIIVNRHTPNQELWIAAKSGGYHFAEQNGKWLATRDSRDFYDVLNEALSAASGEAV
                     EIAEL"
     gene            3725..4231
                     /gene="luxS"
                     /locus_tag="WHR98_001369"
     CDS             3725..4231
                     /gene="luxS"
                     /locus_tag="WHR98_001369"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEZ2308045.1"
                     /translation="MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPN
                     KEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPSEQQVAD
                     AWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
                     LDEGLLNA"
     gene            4377..7169
                     /gene="polA"
                     /locus_tag="WHR98_001370"
     CDS             4377..7169
                     /gene="polA"
                     /locus_tag="WHR98_001370"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEZ2308046.1"
                     /translation="MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNM
                     LRRLRSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTG
                     WPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLD
                     IEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAS
                     EIKGKVGENLQAALPQLPLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFK
                     RWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKATAPEKLDYQA
                     VTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLT
                     AAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYI
                     IESHLGHGLDELSERWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALR
                     LEAHLRAQMDAKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLE
                     QEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPL
                     PKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPI
                     RTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAA
                     EVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPG
                     VAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDL
                     IKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDV
                     PLVAEVGVGENWEEAH"
BASE COUNT         1643 a         1960 c         1989 g         1649 t
ORIGIN      
        1 aaatttttcg ttttcaagcc ttcaccgctt gccatcagcg ttaaattttt ttacgataag
       61 cacatagatt gtaaacaatc ggccacaagc cggtttgttt tttcagaaga cattatccct
      121 gtcagacgct gtttctatat atttcgccta taatggcttg tttttaataa ataattcaag
      181 aggtatcaac gtgtctgatt ccaagacgaa agaacgcgcc acattcggca cgcgccgcgc
      241 gtttatgatt gccgccatcg ggtccgccgt cggcttgggc aatatttggc gtttccccta
      301 tattgctttt gaaaacggcg gcggcgcgtt catcctgccc tatctggtcg cgcttctgac
      361 ggcgggcatc ccgctgctgc tgctcgatta tgccatcggc caccgttacc gtggttctgc
      421 gcccttggct ttccgccgcc tcggacgatg gtttgagccg gtcggctggt ggaacgtgat
      481 gaccaatatc gtcatctgca tctattacgc ggtaattatc ggttgggcgg caagctatac
      541 ctattattcg gtcaacgccg cctggggtgc ggatccgcag ggttttttct ttaaggactt
      601 cctgcaaatg gcgggcccgg aagccttggg tttggatttt gtcggcaaag tcgccggtcc
      661 tttggcgggc gtgtgggttt ttaccgccgc cattatggcg ttgggcgtgc aaaagggcgt
      721 ggcgcgcgcc tcgtcgttct ttatgccgct gcttttggtg atgtttttga ttatggtcgg
      781 catttcacta accctgccgg gtgcggcaaa gggcttggac gcattgttta cgcccgactg
      841 gtcgaaactc gccgattcca aggtctgggt ggcggcatac gggcagattt tcttttcgct
      901 ttccatctgc ttcggcatta tggttaccta ttcttcttat ttgaagaaaa aaaccgactt
      961 gggcggaacg gggctggtgg tcggttttgc caacagcagc tttgaactgc tcgcgggcat
     1021 cggcgtgttt gccgcattgg gctttatggc gcaggcgggc ggtaaggcgg tcaacgaggt
     1081 tgcctcaggc ggcatcggtt tggcgtttat cgcctttccg accattatca accaggcacc
     1141 gatgggctgg ctgatcggca tattgttttt cggttcgctg gtgttcgccg gcgttacgtc
     1201 gatgatttcc atccttgaag tgattgtggc ggcgattcag gacaagctga acatcgggcg
     1261 cgtcaacgcc acgctgctgg tctgcattcc gatgggcatt gtttccacgc tgctgttcgg
     1321 tacggcgacg gggctgccgg ttttggacgt gatggacaaa ttcgtcaaca cctacggcat
     1381 tgttgccgcc ggctttgttt atgttgccgc catcatcatc agcggcaggc tgccggaatt
     1441 acgcaagcac ctgaacgctt tgtcctccat ccgcatcggc ggcttgtgga cggtctgcgt
     1501 cgtggttacc gtcgtgatgc tcggctatat gctgtttaaa gataccagcg gcctgatgga
     1561 gaaaaattac gaaggttatc cggatggttt cctcagtatt ttcggctggg ggatgtcggc
     1621 ggcgttggtc gtgttcgggc tgctgctgtc gttgctgcct tggaaacacg gtcaggattt
     1681 caacgtcaaa gacgaacacg aacatgaaca aggagaagaa aaatgagtac ttccgccatt
     1741 gtgatgatga ttgtctcaat cgtgataatc tggggagggc tgctgctttc cctgttaagg
     1801 ctgccgaacg agtaagcctt tagagcgtta aaaatgccgt ctgaaccgct tcagacggca
     1861 ttttgatgtt cggcttgcag gcaggcgagt tcgtttgcca tttgctgttc taaggtttcg
     1921 cgtcggcgga tgagtttgta tccgccaccg ttaaccaaca cttccgccgc acggttgcgc
     1981 gcgttgtaat tgctcgccat actggctccg tatgcgcccg cgctgcggat aagcagcaaa
     2041 tcgccttctt cgcaggcgat ggtgcggtct ttgccgagga agtcgccggt ttcacaaatc
     2101 gggccgacga tgttggcagt cagcggcgcg atgttttttg gttctaccgc ttcgatgtga
     2161 tgataggcat catatagggc ggggcgcatt aaatcgttca tcgccgcatc gaccatcaca
     2221 aagtttttct cttcgccgta tttgacgaat tcgacacgcg tcaacaacgc gcctgcgttg
     2281 ccgaccaagc tgcggccggg ctcaagaatg agtttcagac ggcgtgtgcc gatcagtttt
     2341 tgaaccgctt gggcatacgc gcccaaatca ggcacttttt cgttttggta aacaatgccg
     2401 acgccgccgc ctaagtccaa atgttccaaa acaatgcctt cggcggcaag cgcgtcaacc
     2461 aaaatcaaaa tgcgttcgca ggcttcgacc agcgggctta agtcggttag ttgggagccg
     2521 atgtggcagt cgatgccgat gattttcaaa ttgggctgtt gtgcggcatg gcggtaggct
     2581 tcgagcgcgt cggcgtaggc gataccgaat ttgttggctt tcaaacctgt ggagatgtaa
     2641 ggatgggttt tcgcatcgac atcgggattg acgcgcaggg agacgggcgc ggttttaccc
     2701 aaacgcgcgg caactttctg aatacggtcg atttcgggga tgctttccat attgaagcat
     2761 ttcacgcctg cattcagcgc gaactcgatt tccgcctcgc ttttgcctac gcctgaaaat
     2821 atggtttttg ccgcgtcgcc gcctgccgcc aaaacgcgtg ccaattcgcc gccggacaca
     2881 atgtcaaaac cgctccccaa agaagcaaag tgtttgatga tgctcaggtt gccattggct
     2941 ttaaccgcat agcagacgag cggggagagc tcggcaaagg cagtttggta gtgttcaaat
     3001 gcttcggtca gcgcggattg gctgtacaca taaagcggtg tgccgaatgc ttcggcaagg
     3061 cgggggtagg ggacttgttc gcaaaatagg gtcatatttt cgttttcatt tttgggttgg
     3121 aggggcggat tgcggtttgc cttgaagctg caaaccggtt tggattacgc cgaaacgcgc
     3181 cttgtcgcct tctttgggca ggtagaggtc gcctttgtaa ccgcaggccg agagcaggag
     3241 ggcggttgcc gccgcaaaaa atacgccgta tttcatcggt aaacttcctt cataagcgcg
     3301 aatgtggcaa gattcggcat cttaaacaaa aaacacgcaa aaagctatga tgaccgaaag
     3361 cgagtttatc cgcgcgagcg aagcattatt tgaacacatc gaagaccaaa tcgacgaaaa
     3421 cggctgggat ttcgactgcc ggtttgccgg aaacgtcctg accatcgaag ccggagacgg
     3481 cacgcaaatc atcgtcaacc gccacacgcc caatcaggaa ttgtggattg ccgccaaaag
     3541 cggcggctac catttcgccg agcaaaacgg caaatggctg gcaacgcgag acagccgcga
     3601 tttttatgat gttttaaacg aagccctgag cgcggcttcg ggcgaagcgg tggaaattgc
     3661 ggaattgtga ttcagtattc aaatatccct agttaagaat ctattgacct taaaggataa
     3721 cccaatgccc ctactagaca gtttcaaagt cgatcacacc cgtatgcatg cccccgccgt
     3781 acgcgtggcg aaaaccatga ctacgcccaa aggcgacacc attaccgtgt ttgacctgcg
     3841 cttttgcgtt cccaacaaag aaatcctgcc tgaaaaaggc atacacacgc tggagcattt
     3901 gttcgccggc tttatgcgcg accacttgaa cggaaacggc gtggaaatca tcgacatttc
     3961 cccgatgggc tgccgcaccg gtttctacat gagccttatc ggcacgcctt ccgaacagca
     4021 ggtcgccgat gcgtggctgg cttcgatgca ggatgttttg aatgtcaaag accaaagcaa
     4081 aatccccgag ttgaacgaat accaatgcgg cacttatcaa atgcactcgc tcgccgaagc
     4141 gcagcaaatc gcgcaaaacg tgttggcgcg caaagtggcg gtgaacaaaa acgaagagct
     4201 gacgctggat gaagggctgc tgaacgccta atccgccaaa aatgccgtct gaacaagggt
     4261 ttcagacggc atttgccttt tccgttataa tctagggttg tgcgggggcg ggttttaagc
     4321 cggcatcgtc cttccctatt tttttctgtc ccttatcggt tttaagcggg ttttttatgt
     4381 ccaacagacc tacactcctc ctcgttgacg gctcttccta tctctaccgc gcgtatcacg
     4441 cgatggggca aaacctgacc gcacccgacg gtgcaccgac gggcgcgctg tatggcgtat
     4501 tgaatatgtt gcgccgtttg cggtcggaat atccgcacga ttattgcgcg gtggtttttg
     4561 atgcgaaagg caaaaatttc cgccatcaaa tgtttgaaga atacaaggcg acgcgcccgc
     4621 cgatgcccga cgatttgcgc ccgcaggcgg aagcactgcc ggatttagtg cgcctgacag
     4681 gctggccggt attggtgatt gggcaggtgg aggcggacga tgtgatcggc acgctggcga
     4741 aacagggggc ggaacatggt ttgcgagtca ttgtttcgac cggcgataag gacatggcgc
     4801 agttggtgga tgagcgcgtt acgctggtga acacgatgag cagcgaaacg ctggacattg
     4861 aaggcgtgaa ggcaaaattc ggcgtgcgcc ccgaccaaat ccgcgattat ctcgcgctga
     4921 tgggcgacaa ggtggacaac gtgccgggcg tggaaaaatg cggcccgaaa acggcggtga
     4981 aatggctgga agcctacggt tcgctggctg gtgtgatgga acacgcttcg gaaatcaagg
     5041 gcaaagtggg cgaaaacctg caagccgcgc tgccccaact gccgctgtca tatgatttgg
     5101 tcacgattaa aaccgatgtg gacttgcacg ccgagctttc agacggcatc gaaagcctgc
     5161 gccgtactac gccgaaatgg gcgcagctgg ttgtcgattt caaacgctgg ggcttccgca
     5221 cctggctgaa agaagcggaa tcaaacatga ataccggctc gaccgatgat ttgttcggca
     5281 gcgacagcat cggcgagcag gcggctttga atgcggaaat gccgtttgaa aaacaagccg
     5341 aaaaagccac cgcccccgaa aaactggatt atcaagccgt taccaccgaa gcgcagtttg
     5401 ccgctttgtt ggacaaactg tcgcgggcgg acacaatcgg catcgatacg gaaaccacgt
     5461 cattagacgc gatgaacgcc tcgctggtcg gcatcagcat cgctttccaa gcaggcgaag
     5521 cggtttacat ccccgtagga cacagcctga ccgccgcgcc cgaacagctt gatttgcaag
     5581 acgtattagg ccgtctgaaa ccgcatttgg aaaaccccgc cctgaagaaa atcgggcaaa
     5641 acctcaaata cgaccaacac gttttcgcca actacggcat cgccctgaac ggcattgccg
     5701 gcgacgctat gctcgcttcc tacatcatcg aaagccatct tggacacggc ttggacgaat
     5761 tgtccgaacg ttggctgggc ttggaaacca ttacctacga atcattgtgc ggtaaaggcg
     5821 cgaagcaaat cagttttgcc gatgtcgcca tcgggcaggc gaccgaatac gccgcccaag
     5881 acgccgattt cgccttgcgc ctcgaagcgc acctgcgcgc gcaaatggac gccaaacagc
     5941 ttgaaatgta tgaaaaaatg gagctgcccg tcgcgcaagt attgtttgaa atggaacgca
     6001 acggtgtgca aatcgaccgc gccgaactcg cccgccaaag cgcggaactc ggcgccgagc
     6061 tgatgaagct cgaacaagaa gcctacgccg ccgcagggca gccgttcaac ctcaactcgc
     6121 ccaaacagct gcaagaaatc ctgttcgaca aaatgggcat cccgacaaaa gggctgaaaa
     6181 aaaccgccaa gggcggcatt tccaccaacg aggccgtgct cgaacagctc gcgcccgact
     6241 accccctgcc taaaatcatc ctgcaaaacc gcagcctggc gaagctcaaa tccacctaca
     6301 ccgacaaact acccgaaatg atttccccca aggacggccg cgtgcatacc acctacgccc
     6361 aagccgtcgc cattaccggc cgcctcgcca gcaacaaccc caacctgcaa aacatcccca
     6421 tccgcaccgc cgaaggccgc cgcgtgcgcc gcgcctttac cgcaccgcaa ggcagcgtca
     6481 tcgtttccgc cgactattcc caaatcgagc tgcgcattat ggcgcacctc tccggcgaca
     6541 aaaccctgat tgccgcgttc caaaacggcg aagacgtaca ccgccgcacc gccgccgaag
     6601 tgttcggcac tgcgcccgaa aacgtctcgc ctgagcaacg ccgctacgcc aaaaccatca
     6661 acttcggctt aatctacggt atggggcaat acggccttgc caaatcattg ggcatcgaca
     6721 acctttccgc caaaaacttt atcgaccgct acttcgcccg ctaccccggc gtcgccgaat
     6781 acatgcagcg caccaaagaa caagccgccg cccaaggctt cgtcgaaacc ctgtttggcc
     6841 gccgcctcta cctgcccgac atccgcaaca aaaacgccaa cgcccgcgcc ggagccgaac
     6901 gcgccgccat caacgccccc atgcaaggca ccgcctccga ccttatcaaa cgcgccatga
     6961 tagacgtgcg aaactgtctt tcagacggca tcggcagcaa actggtcatg caggtgcatg
     7021 acgaactggt gctggaagtc gttgaaaccg aactggattt tgtcaaagaa aaactgccgc
     7081 agattatggc gaaagtggac ggcggattat tggatgtacc gctggtggct gaggttggcg
     7141 taggggagaa ttgggaagag gcacattgat tgaaaggtgt tatatgctat ctttatttaa
     7201 ataaaattta atttttggta tattttttct aaatgttcct a
//
LOCUS       DAWGNT010000097         7201 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.097, whole genome shotgun sequence.
ACCESSION   DAWGNT010000097 DAWGNT010000000
VERSION     DAWGNT010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7201)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7201)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7201
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.097"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(86..955)
                     /locus_tag="WHR98_001371"
     CDS             complement(86..955)
                     /locus_tag="WHR98_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEZ2308047.1"
                     /translation="MSANEYTQIGWIGLGQMGLPMVTRLLDGGIEVGVYNRSPDKTAP
                     ISAKGAKVYGNTAELVRDYPVIFLMVSDYAAVCDILNGVRDGLAGKIIVNMSTISPTE
                     NLAVKALVEAAGGQFAEAPVSGSVGPATNGTLLILFGGSEAVLNPLQKIFSLVGKKTF
                     HFGDVGKGSGAKLVLNSLLGIFGEAYSEAMLMARQFGIDTDTIVEAIGGSAMDSPMFQ
                     TKKSLWANREFPPAFALKHASKDLNLAVKELEQAGNTLPAVETVAASYRKAVEAGYGE
                     QDVSGVYLKLAEH"
     gene            complement(1050..1967)
                     /gene="hisB"
                     /locus_tag="WHR98_001372"
     CDS             complement(1050..1967)
                     /gene="hisB"
                     /locus_tag="WHR98_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HEZ2308048.1"
                     /translation="MNLTKTQRQLHNFLTLAQEAGSLSKLAKLCGYRTPVALYKLKQR
                     LEKQAEDPDARGIRPSLMAKLEKHTGKPKGWLDRKHRERTVPETAAESTGTAETQIAE
                     TASAAGCRSVTVNRNTCETQITVSINLDGSGKSRLDTGVPFLEHMIDQIARHGMIDID
                     ISCKGDLHIDDHHTAEDIGITLGQAIRQALGDKKGIRRYGHSYVPLDEALSRVVIDLS
                     GRPGLVYNIEFTRALIGRFDVDLFEEFFHGIVNHSMMTLHIDNLSGKNAHHQAETVFK
                     AFGRALRMAVEHDPRMAGQTPSTKGTLTA"
     gene            complement(1964..3061)
                     /locus_tag="WHR98_001373"
     CDS             complement(1964..3061)
                     /locus_tag="WHR98_001373"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEZ2308049.1"
                     /translation="MKSVRSFIRDDIQAMSAYQIADVPPGFAKLDSMESPVHPFAGHE
                     TLLQEWQARLAAAPIHLYPNPSGSGLQEALRSAFDIPDCADIALGNGSDELIQFITML
                     TAKPGAAMLAAEPSFVMYRHNAALYGMDYVGVPLNGDFTLNLPAVLEAVRKHRPALTF
                     IAYPNNPTGVCFTRAEIEAVIEASDGIVVVDEAYGAFNGDSFLPQAGSIPNLIVMRTV
                     SKIGFAGLRIGYAAGCPEVIGELQKILPPYNMNQLSLTTAKLALQHYGIISANIDSLK
                     NERERMFAELGKICRLNTFPSQANFITIRVPDADLLFDTLKQNRILVKKLHGAHPLLE
                     HCLRITVGSPAQNDAVLNIIRQLYCQPTDFL"
     gene            complement(3107..4396)
                     /gene="hisD"
                     /locus_tag="WHR98_001374"
     CDS             complement(3107..4396)
                     /gene="hisD"
                     /locus_tag="WHR98_001374"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEZ2308050.1"
                     /translation="MKKLNTQSPDFQAGLKALLAFETAQNPETERIVADICADVQKRG
                     DAALIEYTNKFDQTNAKSIDDLILTQADLKAAFERIPNDVQTALQTAARRVESYHQRQ
                     KMESWSYTDEDGTLLGQQITPLDRVGIYVPGGKAAYPSSVIMNAMPAHVAGVKEIIMV
                     VPTPKGERNDIVLAAAYVAGVTKVFTVGGAQAVAALAYGTETIPQVDKITGPGNAFVA
                     AAKRRVFGVVGIDMVAGPSEILVIADGTTPADWVAMDLFSQAEHDEIAQAILIGTSQA
                     YLDEVEAAMDRLIETMPRRDIIEASLGNRGAMILAKDLDEACEIANYISPEHLELSVE
                     NPQEWAKKIRHAGAIFMGRYTGESLGDYCAGPNHVLPTSRTARFSSPLGTYDFQKRSS
                     LIQVSEQGAQKLGETASVLAHGESLTAHARAAEFRMK"
     gene            complement(4393..5292)
                     /locus_tag="WHR98_001375"
     CDS             complement(4393..5292)
                     /locus_tag="WHR98_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HEZ2308051.1"
                     /translation="MVAKIKKFSDSTLSVLNNGERRFYVYCLTDLKKDKILYIGKGFG
                     NRIFEHEWVASRSQDPVSGEIIDRKLKAISKCKKLGRYIISYHLTEVEALAAESALIH
                     FVKSVLGKKLKNKIAGHGPGGISVEELDRRFGFSSLPLNEINPDGLILAIKIHNAFDL
                     DTDEELDYLFDNQDDANLKSRTLGNWVIGKDVASKVKYVIGVHTGLQNAVVSAYEVDG
                     FETMVEETKNGRKQSRYRFRTTSRSEEVLAKLGLQQKCLPELKFGSGGEKAYIRPKTE
                     TETEQENIQTTPNPKIKKEKTKS"
     gene            complement(5396..6049)
                     /locus_tag="WHR98_001376"
     CDS             complement(5396..6049)
                     /locus_tag="WHR98_001376"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEZ2308052.1"
                     /translation="MQDNALTIALSKGRIFEETLPLLAAAGIVPTEEPEKSRKLIIGT
                     NHENIRLVIVRATDVPTYVRYGAADFGIAGKDVLIEHGGTGLYRPLDLEIAKCRMMVA
                     VRKGFDYEAASQPGCRLKIATKYPEIAASHFAGKGVHVDIIKLYGSMELAPLVGLSDA
                     IVDLVSTGNTLKANGLEAVEHIVDISSRLVVNKAALKTKYALLEPIIQAFGGAVKAK"
     gene            complement(6128..6781)
                     /locus_tag="WHR98_001377"
     CDS             complement(6128..6781)
                     /locus_tag="WHR98_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEZ2308053.1"
                     /translation="MFSVPRSFLPGVFVLAALAACKPQDNSAAQVASSSVSASAAENA
                     AKPQTRGTDMRKEDIGGDFTLTDGEGKPFNLSDLKGKVVILSFGFTHCPDVCPTELLT
                     YSDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGGQNLPVIK
                     QQYRVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETIAADVRTLL"
     gene            7058..7142
                     /locus_tag="WHR98_001378"
     tRNA            7058..7142
                     /locus_tag="WHR98_001378"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7092..7094,aa:Leu,seq:caa)
BASE COUNT         1480 a         1720 c         2121 g         1880 t
ORIGIN      
        1 tcataatcgg gactgatttt aagcgtgggg tgataaaaat gccgtctgaa atatgttcag
       61 acggcattgt gtttggaaaa ggcaatcagt gttctgccaa tttcaggtaa acgccggaaa
      121 cgtcctgttc gccgtagccg gcttcgactg ctttgcggta gctggcagca acggtttcga
      181 cggcgggcag ggtgttgcct gcctgttcaa gctctttgac ggcgaggttg aggtctttgg
      241 aggcgtgttt gagggcgaag gcgggtggga attcgcggtt tgcccacagg gattttttgg
      301 tttggaacat gggcgagtcc attgccgagc cgccgatggc ttcgacgatg gtgtcggtat
      361 cgatgccgaa ctgccgcgcc atcagcatcg cttcgctgta cgcttcgccg aaaatgccca
      421 agagcgagtt caagacgagt ttcgcgcccg aacctttgcc gacatcgccg aaatggaagg
      481 tttttttgcc gacgagggaa aatatttttt gcagcgggtt taaaacggct tcgctgccgc
      541 cgaacagaat cagcagcgtg ccgttggtgg cgggcccgac cgatccggaa acgggtgctt
      601 cggcaaactg tccgcctgcg gcttcgacaa gtgctttgac ggcgaggttt tcggtcgggg
      661 agatggtgct catgttgacg atgattttgc cggccaatcc gtcgcggact ccgttcagga
      721 tgtcgcacac ggcggcatag tcggaaacca tcaggaaaat gacgggatag tcgcggacga
      781 gttcggcggt gttgccgtaa acttttgcgc ctttggcgga gatgggggca gttttgtcgg
      841 gcgagcggtt gtatacgccg acttcgatgc cgccgtccaa gagccgcgtt accataggca
      901 gacccatttg ccctaagcct atccagccga tttgtgtgta ttcgtttgcg gacatgatgt
      961 ttactccttt tctgtttgta gtgtagtgta atcttatctg ttccgatacc gtctgaaaag
     1021 cctgcgggtg tttcagacgg tatggttttt tatgcggtca gcgtgccttt ggtcgagggg
     1081 gtctgtcctg ccatgcgcgg gtcgtgttcg actgccatac gcagggcgcg cccgaaggct
     1141 ttgaatacgg tttccgcctg atggtgggcg tttttgccgc tgaggttgtc gatgtgcagg
     1201 gtcatcatac tgtggttgac gatgccgtgg aaaaattctt caaacaaatc gacatcgaaa
     1261 cgtccgatta gtgcgcgggt aaattcgatg ttgtacacga gtccggggcg gccggaaagg
     1321 tcgatgacga cgcggctgag ggcttcgtcg agcgggacgt aggaatgtcc gtaacggcgg
     1381 atgccttttt tgtcgccgag tgcctgccgg attgcttgtc cgagtgtgat gccgatgtct
     1441 tcggcggtgt ggtggtcgtc gatgtgcagg tcgcctttgc agctgatgtc gatgtcaatc
     1501 atgccgtggc gggcgatttg atcgatcatg tgttcgagga agggtacgcc ggtatccagc
     1561 ctgcttttgc cgctgccgtc gaggttgatg gagacggtga tttgggtttc gcaggtattg
     1621 cggttgacgg taacgctgcg gcagccggca gcagatgcgg tttcggcaat ttgggtttcg
     1681 gcagttccgg tgctttctgc ggcggtttcg gggacagtgc gttcgcggtg ttttctgtcg
     1741 agccagcctt tgggtttgcc ggtgtgtttt tcgagttttg ccatcaggct gggacggatg
     1801 ccgcgtgcat ctgggtcttc tgcctgcttt tcaaggcgtt gtttgagttt gtagagtgcg
     1861 acgggggtac ggtagccgca gagtttggcg agcttggaca gcgaacctgc ttcttgggcg
     1921 agggtcagaa agttgtgcag ttggcgttgt gttttagtca aattcatagg aaatccgttg
     1981 gttggcagta aagttggcga atgatgttga gaacggcatc gttttgtgcg gggctgccta
     2041 cggtaatgcg caggcagtgt tccaaaagcg ggtgcgcgcc atgcagtttt ttaaccaaga
     2101 tgcggttttg tttgagcgtg tcaaacaaca aatcggcatc gggtacgcgt atggtaatga
     2161 agtttgcctg acttggaaag gtgttcagac ggcatatttt gcccaattcg gcgaacatcc
     2221 gttcgcgttc gtttttcagg ctgtcgatgt tggcagagat gatgccgtag tgttgcaggg
     2281 cgagtttggc ggtggtcagg ctcagttggt tcatattgta gggcggcagg attttttgca
     2341 gttcgccgat gacttcggga cagcctgccg catagccgat acgcagtccg gcaaaaccga
     2401 ttttgctgac ggtacgcatg acgatgaggt tgggaatgct gcccgcctgc ggcaggaagc
     2461 tgtcgccgtt gaatgcgccg taggcttcgt cgacgacgac gatgccgtct gaagcttcga
     2521 tgacggcttc gatttcggca cgcgtgaaac atacgccggt ggggttgttg gggtaggcga
     2581 taaaggtcag ggcagggcgg tgcttcctga cggcttcgag gacggcgggc aggttgaggg
     2641 tgaaatctcc gttcagtgga acgccgacat aatccatgcc gtacagcgcg gcgttgtggc
     2701 ggtacatgac gaaactgggt tcggctgcca acattgccgc gcccggtttg gcggtcagca
     2761 tcgtgatgaa ctgtatcagc tcgtccgagc cgttgcccag cgcgatgtcg gcgcagtcgg
     2821 gaatgtcgaa cgccgaacgt aatgcttcct gtaaaccgct gccggaggga ttggggtaaa
     2881 gatggatggg cgcggcggca agccgtgcct gccattcctg caacagcgtt tcatgtccgg
     2941 caaaagggtg gacgggactt tccatcgaat cgagtttggc aaagccgggc ggaacgtcgg
     3001 caatctgata tgccgacata gcttgtatgt cgtcgcggat gaaggagcgg acggatttca
     3061 tcgtgtttcc ttaatggttg gaatatgcct gtacgccgtt tcggcattat ttcatacgga
     3121 actctgccgc gcgggcgtgg gcggtcaggc tttcgccgtg tgccagcacg ctggcggttt
     3181 cgcctaattt ttgcgcgccc tgttccgaaa cctgaatcag gctggagcgt ttttggaaat
     3241 catatgtccc caaaggcgag gaaaagcggg cggttcggct ggtgggcaat acatggtttg
     3301 gaccggcgca gtagtcgccg aggctttcgc cggtgtagcg tcccatgaaa atcgcaccgg
     3361 cgtggcggat ttttttcgcc cattcctgcg gattttcgac tgacagttcc aagtgttcgg
     3421 gggaaatgta gttggcgatt tcgcaggctt cgtccaagtc tttggcgagt atcatcgcgc
     3481 ccctgttgcc gagcgaggct tcgatgatgt cgcggcgcgg catagtttcg atcaggcggt
     3541 ccatagcggc ttctacttcg tcgagatacg cttgcgacgt gccgatgagg atggcttggg
     3601 caatttcgtc gtgttcggcc tggctgaaca aatccatcgc cacccaatcg gcaggtgtcg
     3661 tgccgtcggc gatgaccagg atttcagacg gccccgccac catgtcgatg ccgaccacgc
     3721 cgaacacgcg gcgtttggcg gcggcgacga aggcgttgcc cggaccggtg attttatcga
     3781 cttgggggat ggtttccgtg ccgtaggcga gggcggcaac cgcctgcgcg ccgccgacgg
     3841 tgaagacttt ggttacgccg gcgacgtatg cggcggcaag cacgatgtcg ttgcgttcgc
     3901 ctttcggtgt cggcacgacc atgatgattt ctttcacgcc tgcgacgtgg gcgggcatgg
     3961 cgttcatgat gacggaactc ggatatgccg ccttgccgcc ggggacgtaa atgccgacgc
     4021 ggtcaagcgg ggtaatctgt tgtcccaaca gcgtgccgtc ttcatcggtg tagctccacg
     4081 attccatttt ttggcgttgg tggtagcttt cgacacggcg ggcggcggtc tgcaatgccg
     4141 tctgaacgtc gttcggaatg cgctcgaacg ccgctttcaa atcggcttgc gtgagtatta
     4201 aatcatcgat gcttttagcg tttgtctgat cgaatttgtt ggtgtattca atcaaagccg
     4261 catcgccgcg cttttgcacg tcggcgcaaa tgtcggcgac gatgcgttcg gtttcggggt
     4321 tttgcgcggt ttcaaaagcc agcagggctt tgagtccggc ttggaaatcg ggcgattggg
     4381 tgttgagttt tttcatgatt tggttttttc cttttttatt tttggattgg gggtcgtctg
     4441 aatattctct tgttcagttt ctgtctctgt tttgggtctg atatacgctt tttctccccc
     4501 gctaccaaac ttcaattcgg gcaggcattt ttgttgcaga ccgagtttgg ctaatacctc
     4561 ttcgctacga gaggtagtgc ggaaacggta acgggattgt tttctaccgt ttttggtttc
     4621 ctcaaccatt gtttcaaaac cgtccacttc gtatgcactg acaacagcgt tttgcagacc
     4681 ggtgtgaacg ccgataacgt atttcacttt tgaagcaaca tctttaccga taacccagtt
     4741 gcccaacgta cgcgatttga ggttggcatc gtcttggttg tcgaaaaggt agtctaattc
     4801 ttcgtcagta tctaaatcga aagcattgtg gattttgatg gcgagaatca gcccgtcggg
     4861 gttaatctcg ttaagtggga gagaagagaa tccaaagcgg cgatctagtt cttctacgct
     4921 aataccaccc ggaccatgcc cggcaatttt atttttgagt tttttaccca agacagattt
     4981 aacaaaatga attaaggcag attcggcggc gagtgcttcg acttcagtca gatgatagct
     5041 gatgatatag cgaccgagtt tcttgcattt ggagatggct ttgagtttcc gatcgataat
     5101 ctcgccggag actgggtctt gtgaacgact agcaacccat tcatgctcga agatacgatt
     5161 accgaagcct ttgccgatgt agaggatttt gtcttttttc aggtcggtca gacaatagac
     5221 ataaaaccga cgctcgccgt tattcaaaac ggaaagggtt gaatctgaga atttttttat
     5281 ttttgcaacc attttaactt ctcctataca gtttactgcc ggtgatattt tcagaagacc
     5341 tgtcggtggg aacggatagg gtcgtctgaa aacgcatctt tattcaaatg aatgcttact
     5401 tcgccttcac tgcgccgccg aacgcctgaa taatcggctc cagcagcgcg tatttcgttt
     5461 tcaaagcagc cttgttgacc accaggcggc tggaaatgtc gacgatgtgt tcgactgcct
     5521 ccaagccgtt tgccttcaag gtgttgcccg tcgaaaccaa gtccacaatc gcatcgctca
     5581 aaccgaccag cggcgcaagt tccatcgagc cgtacagttt gataatgtcc acatggacac
     5641 ccttgccggc aaaatgagat gccgcgattt caggatactt cgtggcaatc ttcagacggc
     5701 atccgggttg cgaagctgct tcgtaatcaa accctttacg cacagcaacc atcatgcggc
     5761 acttggcaat ctccaaatcc aaaggccggt aaagccccgt gccgccgtgt tcgatcagca
     5821 cgtctttgcc cgcaatgccg aagtccgccg cgccgtagcg gacataagtc ggcacatcgg
     5881 ttgcgcggac aatgacaagg cggatgtttt catggttcgt cccgataatc agcttgcgcg
     5941 atttttcagg ctcttcagtc ggaacaatgc cggcagcggc aagcagcggc agcgtctcct
     6001 caaaaatgcg ccccttggat aaggcgatgg tcaaagcatt atcctgcatg gtgtggatgt
     6061 cctttgtcgg ttgaaacaat aatgccgtct gaataggcgc cgacggtgca gacggcatac
     6121 ggttttatca gagcagagtc cttacatcgg cagcaatcgt ttctggctcg cttccgtaag
     6181 gcgagaaaat ggcaacctca ccgtttttgt cgatgagata cgcaccggaa gagtggtcga
     6241 ccaaatagtt ttcgctgtcg tctttttgat tgactttggc agaaaccacg cggtattgct
     6301 gcttgatgac cggcaggttt tggccgcccg ttgccgtcag accgataaag tccggattga
     6361 actgtttggc atacttgccg atgatttcag gcgtgtcgcg ttccggatcg atgctgacga
     6421 acaccacttt cacgtcctta gcctgcccgc ccaactgctt caacgtgtcg ctgtacgtca
     6481 aaagctctgt cgggcagaca tcgggacagt gcgtaaagcc gaaagacaga atcacgacct
     6541 tgcctttcaa atcgctcagg ttgaaaggct tgccttcgcc gtcggtcagc gtgaaatcgc
     6601 cgccgatgtc ttccttacgc atatccgtac cgcgcgtttg cggctttgcc gcattttccg
     6661 cagccgacgc ggatacactt gaagaagcga cttgcgccgc actgttgtct tgaggtttgc
     6721 aggcggcaag cgcggcaagt acgaaaacgc ccggcaaaaa ggaacgcggt acggaaaaca
     6781 tgacaatctc ccaagaataa atagcaaaac ctgattcgta cggaatttga atatttccat
     6841 cttaacgcgt ttggcagatt taatgtagta tttttttacg ttgtctgcac ggcaggaatt
     6901 gccgaatcat acagaatctt tggagcggaa agaacagtaa gattaaaata ataaaaattc
     6961 tatttaaaat caaaaataaa ataaaaacag ataaaataat ttcaaaaaaa aggtttacag
     7021 aatttcaaaa gccattataa tgacgacttc ttcaccagcc caggtggcga aattggtaga
     7081 cgcaggggac tcaaaatccc ccgccgcaag gtgtgtcggt tcgagtccga ccctgggcac
     7141 cacaaccgct tttagagcgg ttattttttt gtctattgct gtttaatgaa atagataaga
     7201 c
//
LOCUS       DAWGNT010000098         7089 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.098, whole genome shotgun sequence.
ACCESSION   DAWGNT010000098 DAWGNT010000000
VERSION     DAWGNT010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7089
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.098"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(71..430)
                     /gene="rnpB"
                     /locus_tag="WHR98_001379"
     ncRNA           complement(71..430)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="WHR98_001379"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(509..1612)
                     /gene="prfB"
                     /locus_tag="WHR98_001380"
     CDS             complement(509..1612)
                     /gene="prfB"
                     /locus_tag="WHR98_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEZ2308054.1"
                     /translation="MEAEVINQLNNTLNDLEKRSEDIRVYMDYQGKKDRLEEVIGLSE
                     DPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVEENDEEGFAAVQ
                     EDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDWAGMLFRMYSRYAER
                     KGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRYSPFDSNNKRHTS
                     FASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQC
                     QNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWGSQIRSYVLDSSR
                     IKDLRTGYEVGNTKAVLDGDLDGFIEASLKQGV"
     gene            complement(1715..2608)
                     /locus_tag="WHR98_001381"
     CDS             complement(1715..2608)
                     /locus_tag="WHR98_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEZ2308055.1"
                     /translation="MVTFSKIRPLLAIAAAALLAACGTAGNNAARKPVQTAKPAAVVG
                     LALGGGASKGFAHVGIIKVLKENGIPVKVVTGTSAGSIVGSLFASGMSPDRLELEAEI
                     LGKTDLVDLTLSTSGFIKGEKLQNYINRKVGGRQIQQFPIKFAAVATDFETGKAVAFN
                     QGNAGQAVRASAAIPNVFQPVIIGRHTYVDGGLSQPVPVSAARRQGANFVIAVDISAR
                     PGKNISQGFFSYLDQTLNVMSVSALQNELGQADVVIKPQVLDLGAVGGFDQKKRAIQL
                     GEEAARAALPEIKRKLAAYRY"
     gene            2950..3399
                     /locus_tag="WHR98_001382"
     CDS             2950..3399
                     /locus_tag="WHR98_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004467760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEZ2308056.1"
                     /translation="MKIGTTWQTASAMLVLRLFAAYEFLESGLQKWNGENWFSEINDQ
                     FPFPFNLLPDALNWNLAMYAELLLPVLLLLGLATRLSALGLMVVTAVAWAAVHAGSGY
                     NVCDNGYKMALIYIVVLIPLLFQGAGGWSLDTLLKKRFCPQCRLKQD"
     gene            3473..3781
                     /locus_tag="WHR98_001383"
     CDS             3473..3781
                     /locus_tag="WHR98_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308057.1"
                     /translation="MNKNIAAALAGALSLSLAAGAVAANKPASNATGVHKSAHGSCGA
                     SKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSK
                     "
     gene            3897..4739
                     /locus_tag="WHR98_001384"
     CDS             3897..4739
                     /locus_tag="WHR98_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HEZ2308058.1"
                     /translation="MIQHAGLGYRRDLAEDFLSLSENSPICFIEAAPENWLKMGGWAR
                     KQFDRVAERLPLALHGLSMSLGGQAPLDTDLIDGIKEMMRRYDCTFFSDHLSYCHDGG
                     HLYDLLPLPFTEEMVHHTARRIREVQDRLGCRIAVENTSYYLHSPLAEMNEVEFLNAV
                     AREADCGIHLDVNNIYVNAVNHGLLSPEAFLKNVDADRVCYIHIAGHDVETPELLIDT
                     HGAAVLPTVWDLLELAYAKLPTIPPTLLERDFNFPPFAELEAEVAKIADYQTRAGKEY
                     RRAA"
     gene            4729..5475
                     /locus_tag="WHR98_001385"
     CDS             4729..5475
                     /locus_tag="WHR98_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2063 domain-containing protein"
                     /protein_id="HEZ2308059.1"
                     /translation="MQPETSAQYQHRFAQAIRGGEAADGLPQDRLNVYIRLIRNNIHS
                     FIDRCYTETRQYFDSEEWSRLKEGFVRDAHAQTPYFQEIPGEFLQYCQSLPLSDGILA
                     LMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTDDLQEAETALLI
                     WRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPEDDNWKNILLGKWSG
                     WTEQRIIIPSLSAISENMEGNSPGQNHLSA"
     gene            5497..6084
                     /locus_tag="WHR98_001386"
     CDS             5497..6084
                     /locus_tag="WHR98_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEZ2308060.1"
                     /translation="MPLPDLTDAELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSA
                     YSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVFTTLDDELLDEAFESHFSQN
                     GHWTPEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQ
                     MCGISTSNYHTIMHRARESLRQCLQIKWFNQENPK"
     gene            6090..6269
                     /locus_tag="WHR98_001387"
     CDS             6090..6269
                     /locus_tag="WHR98_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEZ2308061.1"
                     /translation="MKKCRDIALLLSKHQDRETTPGEKISIYTHLLFCPYCREYKRQL
                     QTIKRSLAKTTRTSK"
     gene            6501..6941
                     /locus_tag="WHR98_001388"
     CDS             6501..6941
                     /locus_tag="WHR98_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308062.1"
                     /translation="MIKETLMRPIFLSFVLLPILITACSTPDKSARWENIGTISNGNI
                     HTYINKDSVRKNGNLMIFQDKKVVTNLKQERFANTPAYKTAIAEWEIHCNNKTYRLSS
                     LQLFDTKNTEISTQNYTASSLRPMSILSGTLTEKQYETVCGKKL"
BASE COUNT         1809 a         1887 c         1617 g         1776 t
ORIGIN      
        1 aaacacaacc taaataaaaa tgccgtctga accatatttc aggtttcaga cggcatttgc
       61 gtgtcggatg cacaccggac aggcggtaag ccgggttctg tctcggacag tcattcctct
      121 aggcataccg ttaccagtat gctcaagcaa cctacccgaa cgctcggcgg gcagcgtcat
      181 tgcgttctgt ttggtcttgc tccgaatggg gtttggcctg ccgcatattg ttaccaaatg
      241 cgcggtgcgc ccttaccgca ccttttcacc cttgcctgtg ctgccaaagc agccatcggc
      301 ggttttgctt tctgttccac tttccgtcgc gttaccgcgc ccggccgtta accggcattc
      361 taccctgcgg agcccggact ttcctccccg tatgccttac gcgatacgcg gcgactgtct
      421 gctcgtcccg tgtgcggcgc ggattataac acgaaacgca aaaatgccgt ctgaaacggt
      481 acaggtttca gacggcatac agcctaaact acacgccctg tttcaggctg gcttcgataa
      541 agccgtccaa atcgccatcc aatacggctt tggtgttgcc gacttcgtag cctgtacgca
      601 agtctttgat acgtgaggaa tccaaaacat acgaacggat ttggctaccc caacctacat
      661 cggatttacc ttcttccaac gcctgtttct cttcattgcg tttgcgcatt tccaattcat
      721 acagtttgga cttcaacatt tccatcgcgg cggctttgtt ggcgtgttgc gaacggtcgt
      781 tttgacattg caccacaatc cccgtcggct cgtgggtaat acgcacggcg gagtcggttt
      841 tgttgatgtg ctgaccgccc gcgcccgatg cgcgataggt gtcgatacgc aaatcggcgg
      901 ggttgatttc gatttcgatg gaatcatcga tttcagggta aacgaacacg gaggcaaacg
      961 aagtatggcg tttgttgttc gagtcaaacg gtgaatagcg caccaagcgg tgaacgccag
     1021 tttcggtacg cagcaaacca taggcgtatt cgccttccac tcggatagtc gcgcggttga
     1081 tgcccgcgat ttcgccgtcg tcttcttcga ggatttcgat tttgaagcct ttgcgctcgg
     1141 cgtagcggct gtacatgcgg aacagcatac ccgcccagtc ttccgcttcc gtaccgcccg
     1201 cgcctgcggt gatgtcgata aagcagttgt tcgggtcggc gggctggttg aacatccgtt
     1261 tgaactccaa atccgccatc tgtttttcca gccccgccac atcttcctgc acggcggcaa
     1321 aaccttcttc gtcgttttct tcgacggtca tttcaatcag catgcggttg tcttcgatgc
     1381 ccgaagcgat gttgtcgagc gtcaacacga tgccttcgag gattttgcgc tctttgccga
     1441 tttcttgggc gcgtttcggg tcgttccaaa gttcggggtc ttcggaaaga ccgataactt
     1501 cttccaatcg gtctttctta ccctgataat ccatataaac tcggatgtct tcgctgcgct
     1561 tttccaaatc attcagggta ttgttgagct ggttgattac ttcggcttcc atgattcttt
     1621 tgttctttca aaattttagg ggcgtattgt acgggattcg ggtatttttt tctatggata
     1681 aagccttcta gaaacacgtt cggacggcat agcgtcaata acggtatgcc gccagtttgc
     1741 gtttgatttc aggcaatgcg gcacgtgctg cctcctcacc caactggatg gcacgttttt
     1801 tctgatcgaa tccgccgact gcacccaaat ccaaaacctg cggtttgata accacatccg
     1861 cctgccccaa ctcattttgc aacgcggaaa cgctcattac gttcagcgtc tgatcgagat
     1921 aagagaagaa gccttggctg atgtttttgc ccggacgggc ggaaatatcg acggcaatca
     1981 cgaaattcgc cccctgccgc cgggcggcac tgacgggcac gggctgcgac agaccgccgt
     2041 caacatatgt atgcctgccg atgataacgg gttggaacac attgggaatg gcggcggaag
     2101 cgcgcacagc ctgcccggca ttcccttgat tgaaagcgac ggccttgccg gtttcaaaat
     2161 cagtagcaac agcggcaaat ttgatgggaa actgctgaat ctgcctgccg ccgacttttc
     2221 ggttgatgta attttgcagc ttttcgcctt tgataaaacc actggtggac aaggttaaat
     2281 cgactaaatc ggttttgcct aaaatttcgg cttccaattc gaggcggtcg ggcgacatac
     2341 ccgatgcaaa aaggctgccg acaatcgaac ctgccgatgt gccggtaacc accttcacag
     2401 gaataccgtt ttctttcaaa accttaataa tacctacatg ggcaaatcct ttagatgcgc
     2461 cgccaccgag tgccaaaccg accactgcgg cgggtttggc ggtttgcacc ggcttgcggg
     2521 cggcattatt tcccgccgtg ccgcaggcgg caagcaacgc ggcggcggcg attgccaaaa
     2581 gcggtctgat ttttgaaaac gttaccatat tttccattcc tttatatatc gcaccccgtc
     2641 aaaaagaggg attgcttttc ttaacaaccc cctttgacag ccaagcaaat gggggctttg
     2701 ttaagtcatc atcaaaatta atatttcttt ttttccttta cggaaattat atttgaaggc
     2761 atactatcca aggtgggaat tatctcacaa caccgccgtt atccaaatat cccgcctttt
     2821 tcccttcctt tccatcaaaa tactttcttt ttatattcat taacttgtta aatcattggc
     2881 tgccgggtgt cagtttttcc gacaaaatcc gtctaatggg gtatcaacag aaccaaaaca
     2941 ggaacactta tgaaaatcgg aacaacttgg cagacggcat ccgctatgct ggttttgcgt
     3001 ctgtttgccg catatgaatt tttggaatcg ggtttgcaaa aatggaacgg ggagaattgg
     3061 ttttctgaaa tcaacgatca attcccattc ccgttcaact tgctgccgga cgcgttaaac
     3121 tggaatctcg ctatgtatgc ggagctttta ctgcccgtac tgttgctttt gggtttggca
     3181 acgcgtctgt cggcattagg gctgatggtc gttaccgccg tcgcttgggc tgcggttcac
     3241 gccggttcgg gttacaatgt ctgcgacaac ggttataaaa tggctttaat ttatatcgtg
     3301 gtattaatcc cgctgctttt ccagggtgcg ggcggatggt cgctggatac gctgctgaaa
     3361 aaacggtttt gcccccaatg ccgtctgaag caagattgat tcagtcgtgg aatctgactt
     3421 taaacattcc aaccttatct cgttaacttg atattctgaa aaggaaatag aaatgaacaa
     3481 aaacattgct gccgcactcg ccggtgcttt atccctgtct ttggccgccg gtgcagttgc
     3541 tgccaacaaa ccggcaagca acgcaacagg cgttcataaa tccgcccatg gctcttgcgg
     3601 cgcgtccaaa tctgccgaag gttcgtgcgg cgcggctggt tctaaagcag gcgaaggcaa
     3661 atgcggcgag ggcaaatgcg gtgcgaccgt aaaaaaaacc cacaaacaca ccaaagcatc
     3721 taaagccaag gccaaatctg ccgaaggcaa atgcggcgaa ggcaaatgcg gttctaaata
     3781 atcccacccc ttcaaaccaa gccgcgtttt tcagtaaaat gcggcttttt taacggcaaa
     3841 caaagatttt ttaacaagca catcattctt ttgtgccatc cgaaccgggt aaaaatatga
     3901 ttcaacacgc aggcttgggc taccgccgcg acttggcgga agactttctc tcgctttccg
     3961 aaaacagccc gatatgcttt atcgaagccg caccggaaaa ctggctgaaa atgggcggct
     4021 gggcgcgcaa acagtttgac cgtgtggcgg aacggctgcc gctggcgttg cacggattgt
     4081 ctatgtcgct gggcgggcaa gcaccgctgg atactgattt gatagacggc atcaaagaaa
     4141 tgatgcgccg ttacgattgc acgtttttct ccgaccattt gagctactgc cacgacggcg
     4201 gtcatcttta cgatttgttg ccgctgccct ttaccgagga aatggtgcat catacggcgc
     4261 ggcgtatccg cgaagtgcaa gaccgtttgg gctgccgcat cgccgtggaa aacacgtcct
     4321 actatctgca ttccccgctt gccgagatga acgaggtcga gttcctcaac gccgtcgcac
     4381 gtgaggccga ttgcggcatt catctggatg tgaacaatat ctacgtcaac gccgtcaatc
     4441 acggcctgtt gtcgccggag gcttttttga aaaacgttga cgcagatcgc gtgtgctata
     4501 tccatattgc cggacatgac gtggaaacgc cggaattgtt gattgataca catggcgcgg
     4561 cagttttgcc gactgtttgg gacttgctcg aacttgccta tgccaagctg ccgacgattc
     4621 cgcccaccct gttggaacgc gattttaatt tcccgccttt tgccgaactc gaagccgaag
     4681 tcgccaaaat cgccgattat caaacgcgtg ccggaaagga ataccgccgt gcagcctgaa
     4741 acctccgccc aataccagca ccgtttcgcc caagccatac gcgggggcga agccgcagac
     4801 ggtctgccgc aagaccgact gaacgtctat atccgcctga tacgcaacaa tatccacagc
     4861 tttatcgacc gctgctatac cgaaacgcgg caatactttg acagcgaaga atggagccgt
     4921 ctgaaagaag gtttcgtccg cgacgcgcac gcccaaacgc cctattttca agaaatcccc
     4981 ggcgagttcc tacaatattg ccaaagcctg ccgctttcag acggcatttt ggcactgatg
     5041 gattttgaat atacccaatt gctggcagaa gttgctcaaa ttccagatat tcccgacatt
     5101 cattattcaa atgacagcaa atacacaccc tcccctgcgg cctttatccg gcaatatcga
     5161 tatgatgtta ccgatgattt gcaggaagcg gaaacagcct tgttaatatg gcgaaacgcc
     5221 gaagatgatg tgatgtacca aacattggac ggcttcgata tgatgctgct ggagataatg
     5281 ggttcctccg cgctttcgtt tgacaccctc gcccaaaccc ttgtcgaatt tatgcctgag
     5341 gacgataatt ggaaaaatat tttgcttggg aaatggtcag gctggactga acaaaggatt
     5401 atcatcccct ccttgtccgc catatccgaa aatatggaag gcaattcccc gggccaaaac
     5461 catctatccg cataaaatta ccttgttccc gatactatgc cgctacccga cctgaccgat
     5521 gccgaattaa tagagtcgcg taaactgctt ctgcattttg cgcggcttca gttgcccgac
     5581 caccctgatt tggctgaaga tttagtgcag gaaacattgc tgtccgcata cagcgcaggc
     5641 gacagttttc aaggcagggc acttgtcaac agctggcttt ttgccatatt gaaaaacaaa
     5701 attattgacg cattacgtca aatcggaagg cagaggaaag tctttaccac actggatgac
     5761 gagctactgg atgaagcatt tgaaagccat ttttcccaaa acgggcattg gacgccggaa
     5821 gggcagccgc aacattggaa cactccggaa aaatcattaa acaacaacga attccaaaaa
     5881 attctgcaaa gctgcctata caacctgcct gaaaacaccg cacgggtatt taccctgaag
     5941 gaaatactcg gtttttcatc cgacgaaata caacaaatgt gcggtatcag cacgtccaac
     6001 taccacacca ttatgcaccg cgcccgagaa tcattgcgcc aatgcctgca aatcaaatgg
     6061 ttcaaccaag aaaacccgaa gtaaacgtta tgaaaaaatg ccgcgatatc gccctgcttc
     6121 tttccaaaca tcaagaccgg gaaaccaccc cgggcgagaa gatttccata tacacacacc
     6181 tgctgttctg tccgtattgc cgtgaatata aaagacaact tcaaaccatc aaaagatcac
     6241 tggcaaaaac aaccagaact tcaaaataaa tgccgtctga aaaggcttca gacggcataa
     6301 gctgacggaa aaaaatcaaa ccgatttact gttatcggca gttcatccat aatacacgct
     6361 tcaaaagcag catattcctc catacggaat atataaatac gcaaaacacg aaggctgcat
     6421 caatttgctt tatttgcctt atttcacaga cggcgctacc cctcccgccc aacccgttct
     6481 ttctgaatga gcagatttca atgattaagg aaaccctaat gcgcccaatc ttcctatctt
     6541 tcgttttact ccctattttg ataaccgcct gcagcacacc ggacaagtct gcccgatggg
     6601 aaaatatcgg cacaatctca aacggcaata ttcatacata tatcaataaa gacagcgtga
     6661 gaaaaaacgg aaatctgatg attttccaag ataaaaaagt tgttaccaat ctaaaacaag
     6721 aacgttttgc caacaccccc gcatacaaga ctgccattgc cgagtgggaa atccactgca
     6781 acaacaaaac ataccgctta agttcgctac agttgtttga tacaaaaaac acggaaattt
     6841 ccacacaaaa ctacacagcc tcttccctcc gcccgatgag catcctgtcc gggacattaa
     6901 ccgaaaaaca atatgaaacc gtatgcggaa aaaaactctg attgcaactt atacacaaac
     6961 ctacccacaa accttgtcat aaaaatgccg tctgaaatac tgaaatatca gcatttcaga
     7021 cggcattttg ccattccctg aaaattatcc acaaagttat ccacattatt tttaaaaccg
     7081 gcttccatc
//
LOCUS       DAWGNT010000099         7076 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.099, whole genome shotgun sequence.
ACCESSION   DAWGNT010000099 DAWGNT010000000
VERSION     DAWGNT010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7076
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.099"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(779..1462)
                     /locus_tag="WHR98_001389"
     CDS             complement(779..1462)
                     /locus_tag="WHR98_001389"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HEZ2308063.1"
                     /translation="MELVFIRHGQSEWNAKNLFTGWRDVKLSEQGLAEAAAAGKKLKE
                     NGYEFDIAFTSVLTRAIKTCNIVLEESDQLFVPQIKTWRLNERHYGQLQGLDKKQTAE
                     KYGDEQVRIWRRSYDTLPPLLDKDDEFSAHKDRRYAHLPADVVPDGENLKVTLERVLP
                     FWEDQIAPAILSGKRVLVAAHGNSLRALAKHIEGISDEDIMGLEIPTGQPLVYKLDDN
                     LKVIEKFYL"
     gene            1758..4061
                     /gene="parC"
                     /locus_tag="WHR98_001390"
     CDS             1758..4061
                     /gene="parC"
                     /locus_tag="WHR98_001390"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HEZ2308064.1"
                     /translation="MNMQPHAPHTDSNTLMLGRYAERAYLEYAMSVVKGRALPEVSDG
                     QKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTL
                     RYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEP
                     LHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPA
                     PDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAK
                     ILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSR
                     IDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLK
                     FRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEIQAEDILEIR
                     LRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTL
                     VEEAGRAVLTQTTADEPITLILSEKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTV
                     LPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAMLTGLPEQHYLLSS
                     SGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNR
                     ALAFPIGELKIMAKGKGLQIIGLNAGESLTHTAVSSEPEILIESEGRRGAAHKDRIPV
                     SLLEAKRGKKGKLLPISGSLKQLSSPK"
     gene            4082..5599
                     /locus_tag="WHR98_001391"
     CDS             4082..5599
                     /locus_tag="WHR98_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEZ2308065.1"
                     /translation="MVISNPRELEKLKDRIPNLINIIRVAIVFPLMIMHILGLETGSR
                     ANLHASWTAWAFYVWLAIACWLIFFSIIHPHWQWQALRIPSFSAVADITMIGVLTYLF
                     GGIDSGFGILILPFVVCSCLLSYGRYPLLYSSYAAILLIFNAIADGDIGKYPLISDAR
                     TASATFILVAASYLSAIFTSLSVRYIDRAGKLAHENHAAYRRIRGLNQIVLNRVQEAV
                     VVINVEHQTILFNKKAKDLLPMLEIGQHTALFDPITVLWDKASSRTFERNIDTPALTA
                     RIRAVPMNKEPDKLLILYIRPQSEIQAEALSVKLAALGQLTANLAHEIRNPMSAIRHA
                     NDLLRENMEAGAADPFNAKLCKIIDGNVCRIDKMLEDISSLNKRNKTEREAIGLIPFW
                     EEFKQEFLLGHPDAAGCIRLDMQGNHLTAYFDPAHLRQIMWNLANNAWRHSRKQPGSI
                     SVTIRPAQKNTVCILFADRPKCRNTCSNPFTPRRKTAPASGCMSPANWHMPTSAI"
     gene            5651..6118
                     /locus_tag="WHR98_001392"
     CDS             5651..6118
                     /locus_tag="WHR98_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HEZ2308066.1"
                     /translation="MTELQHPVLVVDDETDILDLMEMTLMKMGLRAHTASGVAEAKNK
                     LDSQRYSLVLTDMRMPDGSGLEVVQHINSRLLDTPVAVITAFGNADQAQEALRCGAFD
                     PDTMQIQDYLDQIERDIIEQTLKQTEGNRTQAAKRLGISFRSMRYRMERLNIG"
     gene            6222..6974
                     /locus_tag="WHR98_001393"
     CDS             6222..6974
                     /locus_tag="WHR98_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003697951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEZ2308067.1"
                     /translation="MTDILIDNTATEAVRALIQAFPLVPVSQPPEQGSYLLAEHDTVS
                     LRLVGEKSSVIVDFASGAAQYRRTKGGGELIAKAVNHTAKPTVWDATAGLGRDSFVLA
                     SLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARITLHFGNSAVQMPALVQTQG
                     KPDIVYLDPMYPERRKSAAVKKEMTYFHRLVGEAQDEAALLHTARQTAKKRVVVKRPR
                     LGEHLAGQAPAYQYTGKSTRFDVYLPYGTDKG"
BASE COUNT         1714 a         2169 c         1746 g         1447 t
ORIGIN      
        1 atagttgcgt agggtgggct tcagcccacc aactcccacc aactcccacc atcttcaccc
       61 taaaaccccg tcatctccgc aaaagcaatt gcgtagggtg ggcttcagcc caccgttttt
      121 cttcattttc ggttgttgat tggcaggctg aagcccaccc tgcggttaca aaaatcccgt
      181 cattcccgcg caggcgggaa tccagacctt tcggggcgga aacttatcgg ataaaacgat
      241 ttcccctgca tcctggattc ccactttcat gggaatgacg ggatataggt ttccctacgg
      301 acgtgttcag attcccgcct tcgcgggaat gacggcggag aagtttctgt ctttccgata
      361 acttaccgta acttaaaatc ccgtcattac cgcaaaagca gttgctacgg ttacaaaaat
      421 cccgtcatcc ccacgaaagc gaaaatcctg cctgtcggat ttcggttttt tcgggcgttt
      481 cgggaactta taaatcgtca ttcccgcgca ggcgggaatc cagaacgcgg gacggcggca
      541 atattcaaag gttgtctgaa aattcagagg ttctagattc ccgcctgcgc gggaatgacg
      601 gcggagcggt ttctgctttt ccgataaatg accgcaacct aaaacccatc cttcccacga
      661 aaacagaaaa acaaaaacct aaaatcccgt cgttctcgcg aaagcagttg ctacgtttac
      721 cgtcaaaaat gccgtctgaa cgctcaagcc ttcagacggc attttttatt tcacaccctt
      781 acaggtagaa tttttcgatg actttcaaat tgtcatccaa tttgtacacc agcggctgac
      841 cggtcgggat ttccaagccc ataatgtctt cgtcggaaat gccctcgatg tgttttgcca
      901 gcgcgcgcag ggagttgccg tgcgccgcca ccaagacgcg tttgccgctc aaaatcgcgg
      961 gggcgatttg gtcttcccaa aacggcaata cgcgctccag cgttactttc aggttttcgc
     1021 cgtcgggtac gacatcggca ggcagatggg catagcggcg gtctttgtgt gcggaaaact
     1081 catcgtcttt gtccaaaagc ggcggcaggg tgtcgtagct gcgccgccag atgcggactt
     1141 gctcgtcgcc gtatttttcg gcggtttgtt ttttgtccag gccttgcagt tggccgtagt
     1201 ggcgttcgtt cagccgccac gttttgattt gcggtacgaa cagttggtcg gattcttcca
     1261 aaacgatgtt gcaggtctta atcgcgcggg tcaggacgga tgtgaaggcg atgtcgaact
     1321 catagccgtt ttctttcagt tttttaccgg cggcggcagc ctcggcaagc ccctgctcgc
     1381 tcagcttcac gtcgcgccag cctgtaaaca ggtttttcgc gttccattcg ctttgtccgt
     1441 ggcggataaa taccaattcc atatcgtctc caatgtgtga aagtgggaaa gccttattta
     1501 taacatattt tcacattccc gtatttgatt cagattcaga cacgcgccca ctatggtttg
     1561 ccgttttgat ttacaataat gccctttgct ttacattccg catacacaat gtttcaacac
     1621 acaggacgac acataaagca ccgccctatg tgttgccctg atttggaagg ggttgccccc
     1681 tcccaaataa agtctgattc taccgccccg aaggacagat gtccaagtgg cgggggttca
     1741 accgaaaagg aaatacgata aatatgcaac cgcacgctcc acataccgat tccaatacgc
     1801 tgatgctcgg ccgatacgcc gaacgcgcct atctcgaata cgccatgagc gtggtcaaag
     1861 gccgcgcgct gcctgaagtt tcagacggcc agaagcccgt gcagcggcgc attttgtttg
     1921 cgatgcgcga tatgggtttg acggcggggg cgaagccggt gaaatcggca cgcgtggtcg
     1981 gtgagatttt gggtaaatac catccgcacg gcgacagttc cgcctatgag gcgatggtgc
     2041 ggatggcgca ggattttacc ttgcgctatc ccttaatcga cggcatcggc aacttcggtt
     2101 cgcgcgacgg cgacggggcg gcggcgatgc gttacaccga agcgcggctc acgccgattg
     2161 cggaattgct gttgtccgaa atcaatcagg gaacggtgga tttcgtgccg aactacgacg
     2221 gcgcgtttga cgagccgctg cacctgcccg cccgcctgcc tatggtcttg ctcaacggcg
     2281 cgtcaggcat cgcggtgggc atggcgaccg agattccgtc gcacaatttg aacgaagtta
     2341 cgcaggcggc gattgcgctg ttgaaaaagc cgacgctgga aaccgccgac ctgatgcaat
     2401 acattcccgc acctgatttt gccggcggcg gtcaaatcat cacgccggcg gacgaattgc
     2461 gccggattta tgaaaccggc aagggcagcg tgcgcgtgcg tgcgcgttat gaaatcgaaa
     2521 aattggcgcg cggacaatgg cgcgtcatcg taaccgagct accgccgaac gccaattccg
     2581 ccaaaatcct tgccgaaatc gaagagcaga ccaacccgaa accgaaagcg ggcaaaaagc
     2641 agctcaacca agaccagctc aataccaaaa agctgatgct ggatttaatc gaccgcgtgc
     2701 gcgacgagtc cgacggcgaa catcccgtgc gactggtgtt cgaaccgaaa tccagccgca
     2761 tcgataccga taccttcatc aacacgctga tggcgcaaac ttcgctggaa ggcaatgtgt
     2821 ccatgaactt ggtgatgatg gggctggaca accgccccgc gcagaaaaac ctgaaaacga
     2881 ttttgcagga atggctggat ttccgcaccg taaccgtaac acgccgtctg aaattccgtt
     2941 tgaaccaagt ggaaaaacgg ctgcacatcc tcgaaggccg tctgaaagtc tttctgcaca
     3001 tcgacgaagt gattaaagtc atccgcgaat cagatgaccc gaaagccgat ttgatggcgg
     3061 cgttcgggct gaccgaaatc caagccgaag acattttgga aatccgcctg cgccagttgg
     3121 cacgtttgga aggtttcaaa ctcgaaaaag aattgaacga attgcgcgaa gaacaaggcc
     3181 gtctgaacat ccttttgggc gatgaaaacg aaaagcgcaa gctgattatc aaagagatgc
     3241 aggcggatat gaaacaatac ggcgatgcac gccgcacgct ggtggaagag gccggacgcg
     3301 ccgtgctgac acaaaccacc gccgacgaac ccatcacact gattctgtcg gaaaaaggct
     3361 ggatacgcag ccgtgccgga cacaatctcg atttgagcca aaccgcgttc aaagaaggcg
     3421 accgcctcaa acaaaccctt gaaggcagaa cggttttacc cgtcgtcatc ctcgattcat
     3481 tgggcagaac ctatacactc gatgccgccg aaattcccgg cggacgcggc gacggcgtgc
     3541 cggtttcatc cttgatcgag ttgcaaaacg gcgcgaaacc cgttgcgatg ttgacaggat
     3601 tgccggaaca acattattta ttatcaagca gcggcggcta cggcttcatc gccaagttgg
     3661 ctgatatggt cggacgcgta aaagcgggca aagtggtgat gaccacagac agtggcgaaa
     3721 ccgtcctgcc gccgattgcc gtctatgcct cctcgttcat caaccccgac tgcaaaatca
     3781 ttgccgccac cagtcaaaac cgcgccctcg ccttccccat cggcgaattg aaaattatgg
     3841 cgaaaggcaa agggctgcaa atcatcggat taaacgccgg cgaatcgctg acgcataccg
     3901 ccgtttcttc cgagccggaa atcctgattg aaagcgaagg caggcgcggc gcggcgcaca
     3961 aagaccgcat ccccgtctcc ctgcttgagg caaaacgcgg caaaaaaggc aaactattac
     4021 ccatatcggg cagcctgaaa cagctttctt cccccaaata aacccgattc cacacataat
     4081 tatggtgatt tccaaccccc gcgaacttga aaaactcaaa gaccggattc ccaatctgat
     4141 caacatcatc cgcgtcgcca tcgtttttcc gctgatgatt atgcacatcc tcgggctgga
     4201 aaccggcagc cgtgcgaacc tgcacgcttc gtggacggcg tgggcgtttt atgtttggct
     4261 cgccattgcc tgctggctga ttttcttttc catcatccat ccgcattggc aatggcaggc
     4321 tttgagaata ccgagtttca gcgcggtggc ggacatcacg atgatcggcg tgctgaccta
     4381 cctgttcggc ggcatcgact ccggcttcgg catcctgatt ctgcccttcg tcgtctgctc
     4441 ctgcctgctc agctacgggc gctaccccct gctctattcc agctacgccg ccatcctgct
     4501 gatattcaac gccattgccg acggcgatat cggcaaatac ccgctcatat cggatgcccg
     4561 aaccgcctcg gcaaccttca tccttgtcgc cgcctcctat ctttccgcca tcttcacctc
     4621 gctgtcggtc agatacatcg accgtgccgg caaacttgcc catgaaaacc acgccgccta
     4681 ccgccgcatc aggggcttga accaaatcgt actcaaccgc gttcaggaag cggtcgtcgt
     4741 catcaacgtc gagcatcaga ccatactgtt caataaaaag gcaaaagatc tgctccccat
     4801 gcttgaaatc ggacagcata ccgccctatt cgaccctatt accgttttat gggacaaggc
     4861 ctcttcgcgt actttcgaac gcaatatcga cacgcccgcc ctgaccgccc gcatccgcgc
     4921 cgtgccgatg aacaaagagc cggacaagct gcttatcctc tacatccgcc cgcaaagcga
     4981 aattcaggca gaagccctgt ccgtcaaact tgccgcgctc ggacaactga ccgccaacct
     5041 tgcccacgaa atccgcaacc cgatgtccgc catccgccac gccaacgatc tgctgcgcga
     5101 aaatatggaa gcgggggcgg cagatccgtt caacgccaaa ttgtgcaaaa tcatcgacgg
     5161 caacgtctgc cgcatcgaca aaatgctcga agatatttcc tcgctcaaca agcgcaacaa
     5221 aaccgaacgc gaagccatcg gcctgatacc gttttgggaa gaattcaaac aagagttcct
     5281 gctcggccat cccgatgccg ccggctgcat ccgcctagat atgcagggca atcacctgac
     5341 tgcctatttc gatcctgccc acctgcggca aattatgtgg aacctcgcca acaacgcgtg
     5401 gcggcacagc cgcaaacagc ccggctcgat ttccgtcacc atccgccccg cgcaaaaaaa
     5461 caccgtctgc atcctctttg ccgaccgccc gaagtgcagg aacacctgtt cgaacccttt
     5521 tacaccacgg cggaaaacgg caccggcctc gggctgtatg tcgcccgcga actggcacat
     5581 gccaacttcg gcgatttgac ctacctgccc gaagccaaat gtttcgaact cgcattaccg
     5641 gaaaaaacca atgactgaac tgcaacaccc cgtcctcgtc gtcgatgacg aaaccgacat
     5701 tctcgacctg atggaaatga ccctgatgaa aatgggcttg cgcgcccata ccgcgtcagg
     5761 cgttgccgaa gccaaaaaca agctcgacag ccaacgctat tcgctcgtcc tgaccgatat
     5821 gcgtatgccg gacggctcgg ggctggaagt cgtccaacac atcaacagcc gcctgctcga
     5881 tacgccggtt gccgtcatca ccgccttcgg caacgccgat caggcacagg aagcgttgcg
     5941 ttgcggcgcg ttcgaccccg atacgatgca gatacaggac tatctcgacc aaatcgaacg
     6001 cgacattatc gaacaaaccc tcaaacaaac cgaaggcaac cgcacgcagg ccgccaaacg
     6061 cttgggcatc agcttccgtt ccatgcgcta ccgtatggaa cgcctcaaca tcggctgacg
     6121 acaaaacggc atccgcacca tctccgccca cccgaaaaaa tgccgtctga aacggcacgg
     6181 gaaagcgggt tcgccccacg cccgaacgga cacaaaacac catgaccgac atccttattg
     6241 acaacaccgc caccgaagcc gtccgcgccc tgatacaggc attccccctt gtgcccgttt
     6301 cccaaccgcc cgaacaaggc agttacctcc ttgccgaaca cgataccgtc agcctcaggc
     6361 ttgtcgggga aaaaagcagc gtcatcgtcg attttgcctc cggcgcggca caataccggc
     6421 gcacaaaagg cgggggcgaa ctcatcgcca aagccgtcaa ccataccgcc aaaccgaccg
     6481 tttgggacgc gaccgcagga ttggggcgcg acagcttcgt cctcgcctcg ctcgggctga
     6541 ccgttaccgc cttcgagcaa catcccgccg tcgcctgcct gctttcagac ggcatccgcc
     6601 gcgccctcct caatcccgaa acgcaagaca ccgccgcgcg catcaccctg catttcggca
     6661 actccgcagt acaaatgccc gcccttgttc aaacacaagg caaacccgac atcgtctatc
     6721 tcgaccccat gtatcccgaa cgccgcaaaa gtgccgccgt taaaaaagaa atgacctact
     6781 tccaccggct cgtcggcgaa gcgcaagatg aagcggcact cctgcatacc gcacgccaaa
     6841 cagcaaaaaa acgcgtcgtc gtcaaacgcc cccgcctcgg cgaacacctt gccggacaag
     6901 cccctgccta ccaatacacc ggcaaaagca cccgcttcga cgtttacctg ccctacggga
     6961 cggacaaggg ataacgccca taaaacaaga caccgaaaaa tttgccgttc ttatgcaaac
     7021 gagaaaccgg tttttgcgtt tcgactgttt tggataaatc atcacacctt aaagtt
//
LOCUS       DAWGNT010000100         7076 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.100, whole genome shotgun sequence.
ACCESSION   DAWGNT010000100 DAWGNT010000000
VERSION     DAWGNT010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7076
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.100"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(105..497)
                     /gene="rpsI"
                     /locus_tag="WHR98_001394"
     CDS             complement(105..497)
                     /gene="rpsI"
                     /locus_tag="WHR98_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019958115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEZ2308068.1"
                     /translation="MNGKYYYGTGRRKSSVARVFLIKGTGQIIVNGRPVDEFFARETS
                     RMVVRQPLVLTENAESFDIKVNVVGGGETGQSGAIRHGITRALIDFDAALKPALSQAG
                     FVTRDAREVERKKPGLRKARRAKQFSKR"
     gene            complement(507..938)
                     /gene="rplM"
                     /locus_tag="WHR98_001395"
     CDS             complement(507..938)
                     /gene="rplM"
                     /locus_tag="WHR98_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEZ2308069.1"
                     /translation="MKTFSAKPHEVKREWFVIDAQDKVLGRVAAEVASRLRGKHKPEY
                     TPHVDTGDYIIVINADKLRVTGAKFEDKKYFRHSGFPGGIYERTFREMQEQFPGRALE
                     QAVKGMLPKGPLGYAMIKKLKVYAGAEHAHAAQQPKVLELK"
     gene            complement(1116..1295)
                     /gene="ssrS"
                     /locus_tag="WHR98_001396"
     ncRNA           complement(1116..1295)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="WHR98_001396"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(1301..1606)
                     /locus_tag="WHR98_001397"
     CDS             complement(1301..1606)
                     /locus_tag="WHR98_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HEZ2308070.1"
                     /translation="MNIEQVHIEVMHARLTVNTPAEEKDTLLQAVGMLNGKAEAIREG
                     GRVADSEKIVIMAALNVVHDLLKTSLNGGDLAIGDFARKIADMDNACQKALSRLAQE"
     gene            complement(1617..1946)
                     /locus_tag="WHR98_001398"
     CDS             complement(1617..1946)
                     /locus_tag="WHR98_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308071.1"
                     /translation="MKQNIEKLESSVYTLVQKFETLVSENRRLKETVAELKRAHERQK
                     LEHETAVDELSEALLVQVGKLKEDLQNKIDSLTEENTRYRSLLEQSREKISALAARLP
                     QRQETQQ"
     gene            complement(2001..2990)
                     /locus_tag="WHR98_001399"
     CDS             complement(2001..2990)
                     /locus_tag="WHR98_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEZ2308072.1"
                     /translation="MKITVIGAGSWGTALALHFSQHGNRVSLWTRNADQVRQMQEARE
                     NKRGLPGFSFPETLEVCADLADALKDSGLVLIVTSVAGLRSSAELLKQYGAGHLPVLA
                     ACKGFEQDTGLLTFQVLKEVLPDNKKIGVLSGPSFAQELAKQLPCAVVLASENQEWIE
                     ELVPQLNTTVMRLYGSTDVIGVAVGGAVKNVMAIATGLSDGLEYGLNARAALVTRGLA
                     EITRLASAMGAQPKTMMGLAGIGDLILTCTGALSRNRRVGLGLAEGKELHQVLVEIGH
                     VSEGVSTIEEVFNTACKYQIDMPITQTLLQLIRKEMTPQQVVERLMERSARFE"
     gene            complement(3113..5815)
                     /gene="ppc"
                     /locus_tag="WHR98_001400"
     CDS             complement(3113..5815)
                     /gene="ppc"
                     /locus_tag="WHR98_001400"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEZ2308073.1"
                     /translation="MQLHILNNPKDAALAADAEFLKQSLFNLLHEEASPLVVETVKLL
                     STSDDSAALIEKVLPQLDEQQTHDLTLACGLFAQILNIAEDVHHERRRQIHEEAGRGG
                     AEGSLTETVRRLKAGKADGKSVQRQLDNTSVTAVLTAHPTEVQRQTVLSFNRRIRALL
                     PQRERCTNADALARLRREIDTILLGLWQTSETRRHKLSVNDEINNGVSIFPMSFFEAL
                     PKLYRNMEHDFQMVYPDVCVPNILKIGGWIGGDRDGNPFVSAETLRFAFRRHADAVFR
                     FYRGELDKLYRELPLSIRRVKVNDDVMALAALSPDEEIARTEEPYRRAIAYIMARAMG
                     KARALGLGMGCKFGFLEPYASAQEFLDDLKKLQRSLIDNGSRLLAEGRLADLIRSVSV
                     FGFHMMPLDLRQHAGKHADVVAELFQHAGLEDYNSLNEEQKQAALLRELSHQRPLYSP
                     FITYSDHTRHELAIFNEARKIKDEFGEDAVTQSIISNCEQPSDLLALALLLKESGLLA
                     VENGKPRSRINIVPLFETIEALENACPVMETMFRLDWYDALLESCGNIQEIMLGYSDS
                     NKDGGYVTSSWCLYQAELGLVELFKKYDVRMRLFHGRGGSVGRGGGPSYQAILAQPAG
                     SVAGQIRITEQGEVITAKYADPGNAQRNLETLVAATLEASILPDKKDPDAKLMQALSD
                     VSFKYYRELITHPDFIDYFLQTSPIQEIATLNLGSRPASRKTLARIQDLRAIPWVFSW
                     MQNRLMLPAWYGFGSAVETLCEDKPETLAALREHAQSNPFFQAMLSNMEQVMAKTDIT
                     LAENYAGLSESPEKAAVIFGMIKEEYQRSRKALLDLLQTEELLRDNRSLARSLALRIP
                     YLNALNGLQVAMLKRLRKEPDNPHALLMVHLTINGVAQGLRNTG"
     gene            5858..6751
                     /locus_tag="WHR98_001401"
     CDS             5858..6751
                     /locus_tag="WHR98_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="HEZ2308074.1"
                     /translation="MPHPCQTVHTLTARVPKCRLKLNAARRQRYNRPQLFFPNIIMTT
                     TEHDNDDAFLLRYSRHILLDEIGIEGQQKLSAAHILVVGCGGLGAAALPYLAASGIGT
                     LTIADSDTVELHNLQRQVAFDEGDVGKLKTEALADRLRHINHTVDVRTINEKLDGCRL
                     TGLVQAADIVLDCCDNYATRQAVNRACVQAKTPLVSGAAVRFEGQLAVYRPDLPDSPC
                     YACLFDGGSASDGICSLFGVFSPLVGIIGSTQAAEALKILLDAGEPSHGRLAVYRALE
                     GGWQYFDLPRNPECPVCGAER"
BASE COUNT         1385 a         1821 c         2062 g         1808 t
ORIGIN      
        1 gtttttgatt tttgcccaat ctgtaatctt tagattgcca atgggaaacc gtctactaca
       61 aataaaaaac cctgcgataa gcagggtttt ttgaatttcc aacattaacg tttggagaat
      121 tgttttgcac ggcgtgcttt gcgcagaccc ggttttttac gttcgacttc gcgggcatcg
      181 cgagtaacga aaccggcttg agacaaggcg ggtttcaacg cggcatcgaa gtcgatcagg
      241 gcacgggtaa tgccgtggcg gattgcgccg gactggccgg tttcgccgcc gccaacaaca
      301 ttgactttga tgtcgaaaga ttcggcgttt tcagtcagaa ccaagggttg gcgaacaacc
      361 attcggctgg tttcgcgtgc gaagaattcg tcaacgggac ggccgtttac gatgatttga
      421 cctgtacctt taatcaggaa tacacgagcc actgaacttt tgcggcggcc tgtgccgtag
      481 tagtatttac cgttcatgtc gcgtccttat ttcagttcca aaactttggg ttgttgcgca
      541 gcatgggcgt gttccgcacc cgcatacact ttcagttttt taatcatggc gtaacccaaa
      601 ggacctttgg gcagcatacc ttttacagct tgttccaaag cgcggcccgg gaattgctct
      661 tgcatttcgc ggaaagtgcg ttcgtagata ccgcctggga aaccggaatg gcggaagtat
      721 tttttatctt cgaatttggc accggttaca cgcagtttgt ccgcattgat aacaatgatg
      781 taatcgccgg tatcgacgtg gggggtgtat tcaggtttgt gtttgccacg cagacggctg
      841 gcgacttcgg ccgcaacgcg acccaagact ttgtcttggg catcgatgac gaaccattcg
      901 cgcttcacct cgtggggttt cgctgaaaag gttttcatag tggaaatcca gatagatata
      961 gaaagttgta aattttaaag acaggattcg attttgtcaa tcgcattacc gcgttacgga
     1021 aggattttcc ggatttcggc agactgcata ctgctttttc gggcggggcg gcggccaatg
     1081 tgaaaaaccg catcgttgcg atgcggtttt gaatgggaat ccccgcgaga gccgtttcgg
     1141 ccgaatccgc ttgaaccttg ctgacaaggc ggctgcctcg ggtagtttcg ggtgcgtccg
     1201 caaaaggacg ctcgcgccca ctactgctcc cggcaacctt aagcgaactt attggttcaa
     1261 aggaatatat gccttcgcgg acaccgcagg gaaaaagggg ttattcctgc gccaagcggg
     1321 atagtgcttt ttggcaggcg ttgtccatat cggctatttt acgcgcaaaa tcgccgattg
     1381 ccaaatcgcc gccgttcagg gaggttttca acaggtcgtg gacgacgttg agcgcggcca
     1441 taatgacgat tttttcgctg tccgcgacgc gtccgccttc gcggatggct tcggctttgc
     1501 cgttgagcat tccgactgcc tgcaacagtg tgtctttttc ttctgccggc gtgttgacgg
     1561 tcagccgggc gtgcatgact tcgatgtgga cttgttcgat gttcatcctt taatccttat
     1621 tgctgcgttt cctgccgttg ggggaggcgc gctgccagtg cgctgatttt ttccctgctc
     1681 tgttcgagca ggctgcggta tcgtgtattt tcttctgtca ggctgtcaat tttgttttgc
     1741 aggtcttctt tgagtttgcc gacttggacg agcagggctt cgctgagttc gtcgacggcg
     1801 gtttcgtgtt cgagtttttg ccgctcgtgc gcccgtttga gttcggcgac ggtttctttg
     1861 aggcggcggt tttcgctgac gagggtttcg aatttttgta ccagcgtata aacgctgctt
     1921 tcgagttttt cgatattttg tttcataacc ttacctgtcc gtatgccgtc tgaaggcttc
     1981 agacggcatc tgtctgttgt ttattcaaaa cgcgcgctgc gttccatcag cctttcgacg
     2041 acctgttgcg gggtcatttc tttgcggatg agttgcagca gggtttgggt aatcggcatg
     2101 tcgatttggt acttacaggc agtattgaag acttcttcta tcgtgctgac cccttcggaa
     2161 acgtgtccga tttcgaccag cacctgatgc agttccttgc cttctgccaa acccaagccg
     2221 acgcggcggt tgcgtgagag tgcgccagtg caggtcaaga tgaggtcgcc gatgcctgcc
     2281 agccccatca tggttttggg ctgtgcgccc attgcggagg caaggcgggt aatttcagct
     2341 aatccgcgcg taaccagtgc ggcacgggcg ttaagcccgt actctaggcc atcggacaat
     2401 ccggtggcaa tcgccataac attttttacc gcgccgccaa ccgccacgcc gataacgtcg
     2461 gtactgccgt aaagcctcat gacagtcgtg ttgagctgcg gtacgagttc ttcaatccac
     2521 tcttggtttt cggaggcgag gacgacggca cagggcagtt gtttggcgag ttcctgtgca
     2581 aaactcgggc cggagagtac gccgattttc ttattgtcgg gcaatacttc tttcaatact
     2641 tgaaaggtca gcagccctgt atcctgctcg aatcctttgc aggcggcgag gacggggagg
     2701 tgtcccgcgc cgtactgttt gagcagctct gcgctgcttc tcaatccggc aacggaggtt
     2761 acgataagga caagtccgct gtctttgagc gcgtctgcca aatccgcaca cacttccaag
     2821 gtttcgggaa aggaaaagcc gggcagtccg cgtttgtttt cacgcgcttc ctgcatttgg
     2881 cggacttggt ctgcgttgcg cgtccacagg gatacgcggt tgccgtgttg ggaaaagtgc
     2941 agggcgagcg ccgtacccca cgaacctgcg ccgataacgg taattttcat tggtcgtctt
     3001 tcaacatatc actgccgttc actttaaaac aatcggtgtt tctctgcaag tgcggtcagg
     3061 gaaatgccgt ctgaaaggtg ttcagacggc attttgcccc gatgcggcac aatcagcctg
     3121 tattgcgcaa accttgcgcc acgccgttga tggtcaggtg aaccatcagc agcgcgtgcg
     3181 gattgtcggg ttctttacgc aggcgtttga gcatggcgac ctgcaggccg ttgagcgcgt
     3241 tcaggtaggg aatcctcaag gcaagcgaac gggcgaggct gcggttgtcg cgtaaaagtt
     3301 cttcggtttg cagcaggtcg agcagggctt tgcggctgcg ttggtattct tccttaatca
     3361 tgccgaagat gacggcggct ttttccggcg attcgctcaa gccggcatag ttttccgcga
     3421 gggtgatgtc ggttttcgcc atcacttgct ccatattgga aagcatggct tggaagaacg
     3481 ggttgctttg ggcgtgttcg cgcagggcgg cgagcgtttc gggtttgtct tcgcacaagg
     3541 tttccaccgc gctgccgaaa ccgtaccaag ccggcagcat gaggcggttt tgcatccagg
     3601 aaaataccca cggaatcgcg cgcaagtcct gaatccgtgc caaggttttg cggctggcgg
     3661 gacggctgcc gaggttgagg gtggcgattt cctgaatcgg gctggtttgc aggaagtagt
     3721 cgatgaagtc ggggtgggta atcagttcgc ggtagtattt gaacgatacg tccgacaatg
     3781 cctgcatcag tttggcatca gggtcttttt tatccggcag gatgctggct tccaaagtcg
     3841 cggcaaccaa ggtttccaag ttgcgttggg cattgccggg gtcggcgtat ttggcggtaa
     3901 tgacttcgcc ttgttcggta atgcggattt gtcccgccac gctgcccgcc ggttgggcga
     3961 gaatggcttg gtaagaaggg ccgccgccgc gtccgacgct gccgccgcga ccgtggaaca
     4021 ggcgcatgcg gacatcgtat tttttgaaga gttcgaccaa gcccaattcc gcctgataca
     4081 gacaccatga gctggtaaca tagccgccgt ctttgttgga gtcggagtag ccgagcataa
     4141 tttcttggat gttgccgcag ctttcgagca gggcatcgta ccaatcgagg cggaacatgg
     4201 tttccatgac cggacaggcg ttttcgagtg cttcgatggt ttcaaacagc ggcacgatat
     4261 tgatgcggct gcgcggtttg ccgttttcca ccgccagcag gccgctttct ttcagcagca
     4321 atgccaaggc gagcaggtcg ctgggttgtt cgcagttgga aataatgctt tgtgtaacgg
     4381 catcttcgcc gaattcgtct ttgattttgc gcgcttcgtt gaaaattgcc agttcgtggc
     4441 gggtatggtc gctgtatgtg atgaacgggc tgtacagcgg acgttgatgg ctcaattcgc
     4501 gcaacagggc ggcttgtttt tgctcttcgt tcaggctgtt gtagtcttcc aagcctgcgt
     4561 gttggaaaag ctcggcaacc acatcggcgt gtttgcctgc gtgttggcgc aggtcgagcg
     4621 gcatcatgtg gaagccgaac acggacacgg aacggatgag gtctgccaaa cggccttcag
     4681 caagcaggcg gctgccgttg tcgataaggg aacgttgcaa ttttttcaaa tcatcgagaa
     4741 attcttgtgc cgaagcatac ggctcgagaa agccgaattt gcagcccatg cccaaaccga
     4801 gcgcgcgcgc tttgcccata gcgcgcgcca tgatgtaagc aatggcgcgg cggtagggtt
     4861 cttcggtgcg agcgatttct tcgtcaggcg agagggctgc cagtgccatt acgtcgtcgt
     4921 tgactttgac gcggcggatg gagagcggca gttcgcggta aagtttgtcg agttcgccac
     4981 ggtaaaaacg gaacacggca tcggcgtggc ggcggaaggc aaaacgcaag gtttcggcag
     5041 aaacgaacgg attgccgtcg cggtcgccac cgatccagcc gccgattttg aggatgttcg
     5101 gaacgcagac atcgggatag accatctgaa agtcgtgttc catattgcgg tagagcttgg
     5161 gcagggcttc gaaaaagctc atcgggaaga tggacacgcc gttgttgatt tcgtcgttga
     5221 cgctgagttt gtggcggcgc gtttcgctgg tctgccacaa gcccagcagg atagtgtcga
     5281 tttcgcggcg cagccgtgcc agcgcgtcgg cattggtgca gcgttcgcgt tgcggcaaca
     5341 gtgcgcggat gcggcggttg aagcttaaga cggtttggcg ttgcacttcg gtcgggtgcg
     5401 cagtcaaaac ggcggtaacg gacgtattgt ccaactgccg ctgcaccgat ttgccgtcgg
     5461 ctttccccgc tttgagcctg cggacggttt ccgtcaggct gccttccgcg ccgccgcgtc
     5521 cggcttcttc gtggatttgg cggcggcgtt cgtggtgcac gtcttcggcg atattcaaaa
     5581 tctgggcgaa caggccgcag gccaaggtta aatcgtgggt ttgttgttcg tccaattgcg
     5641 gcaatacttt ttcaatcaat gccgcgctgt cgtcggaagt ggacaagagt ttgaccgttt
     5701 cgacaaccaa cggcgaggct tcttcgtgca ggaggttgaa cagggattgt ttcagaaatt
     5761 ccgcgtccgc cgccaaagcc gcgtcctttg gattgttcag aatatgcagt tgcatgattt
     5821 ttctctcatt gccgtaaata ctgtaaatgt acctcaaatg ccgcatccgt gccaaaccgt
     5881 tcacacttta accgcccgtg tcccgaaatg ccgtctgaag ttgaacgccg cccgacggca
     5941 gcgttacaat cgcccacaac tgttttttcc gaacatcatc atgaccacga ccgaacacga
     6001 caacgacgat gcattcctgc tgcggtacag ccgccacatc ctcttggacg aaattggcat
     6061 cgaagggcag cagaaacttt ccgccgcgca tattttggtc gtcggctgcg gcggtttggg
     6121 tgccgccgcc ctgccctatc tcgccgcttc cggcatcggc acgctgacca tagccgattc
     6181 cgacacggtc gagctgcaca acctgcaacg ccaagtcgca tttgacgagg gcgatgtcgg
     6241 caaactcaaa accgaagcct tggcagaccg tctgcgccat atcaaccata ctgtcgatgt
     6301 ccgcaccatc aacgaaaaac ttgacggctg ccgcctgacc ggtttggttc aagccgccga
     6361 catcgtttta gactgctgcg acaactacgc cacgcggcag gcggtcaacc gtgcctgcgt
     6421 gcaggcgaaa acaccgctgg tttcaggggc ggcggtacgc tttgaagggc agcttgccgt
     6481 gtaccgtccc gacttgcccg actcgccgtg ttacgcctgc ctgtttgacg gcggatcggc
     6541 ttcagacggc atctgttccc tcttcggcgt attctcgccg ctggtcggca tcatcggcag
     6601 tacccaagcg gcggaggctc tgaaaatcct gctggatgcg ggcgaaccgt cgcacggcag
     6661 gctggcggtt taccgtgcct tggaaggggg ctggcaatat ttcgacctgc cgcgcaaccc
     6721 cgaatgcccg gtttgcggcg cggaacggta aaaccctgcc gccgtttcag acggcatcca
     6781 aacggatgcg gaggaacggt tttaaaaatt taaaaattta catttctttg caaaaaaaaa
     6841 taaacttacc ttataattgc agttgtttta gcaatgtctg tttcgcagac tcattgagta
     6901 agacgttttc cccgtaatgt gtttggccgt ctgtcccctt tgggttcgga cggctttttt
     6961 ttggctgtgt atgaataccc ggttggtttt atctgtttac aggggaaaac cgcttatttc
     7021 cgttcgggcg gaaaacggtt ccatcggata aaaggcattt tgtccgactg attaaa
//
LOCUS       DAWGNT010000101         7047 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.101, whole genome shotgun sequence.
ACCESSION   DAWGNT010000101 DAWGNT010000000
VERSION     DAWGNT010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7047)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7047)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7047
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.101"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(26..280)
                     /locus_tag="WHR98_001402"
     CDS             complement(26..280)
                     /locus_tag="WHR98_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HEZ2308075.1"
                     /translation="MASSNVNNEIKDKKLSLWAKRQDGSVKWFCGQPVTRNDTAKDDT
                     VAADTDTAKKIDTKHLPSTCRDAASAVCIETPPTAFYKNT"
     gene            complement(309..638)
                     /locus_tag="WHR98_001403"
     CDS             complement(309..638)
                     /locus_tag="WHR98_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEZ2308076.1"
                     /translation="MGGLIIEDLQEGFGKEAVKGKEITVHYTGWLENGTKFDSSLDRR
                     QPLTITLGVGQVIKGWDEGFGGMKEGGKRKLTIPSEMGYGARGAGGVIPPHATLIFEV
                     ELLKVYE"
     gene            complement(716..934)
                     /locus_tag="WHR98_001404"
     CDS             complement(716..934)
                     /locus_tag="WHR98_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2061 domain-containing protein"
                     /protein_id="HEZ2308077.1"
                     /translation="MLKTLTFAALHFSTAFSVTYVLTGSIGVSGAVALVEPLINTVVF
                     YFHEKAWNLYEKNKTVQQTQPFQLHRCS"
     gene            1056..2009
                     /locus_tag="WHR98_001405"
     CDS             1056..2009
                     /locus_tag="WHR98_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEZ2308078.1"
                     /translation="MNHKKIVVLDADTLPGRVFHFDFPHELAVYGTTGADETAERVRD
                     AHIVITNKVMISADIIAANPQLELIAVSATGVNNVDIGAAKAAGVAVCNVRAYGNESV
                     AEHAFMLMIALMRNLPAYQRDVAAGLWEKSPFFCHYGAPIRDLNGKTLAVFGRGNIGR
                     TLAGYAQAFGMGVVFAEHKHAPDVREGYVSFEDAVQTADVLSLHCPLNAQTENMIGEN
                     ELQQMKPGAVLINCGRGGLVDENALLAALKYGQIGGAGVDVLTNEPPKNGNPLLNARL
                     PNLIVTPHTAWASREALDRLFDILLANIHAFVKGEAQNRVV"
     gene            complement(2084..4141)
                     /gene="metG"
                     /locus_tag="WHR98_001406"
     CDS             complement(2084..4141)
                     /gene="metG"
                     /locus_tag="WHR98_001406"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEZ2308079.1"
                     /translation="MTRKILVTSALPYANGSIHLGHMVEHIQTDVWVRFQKLRGHECH
                     YCCADDTHGTPVMLAAQKQGIAPEDMIAKVREEHLADFTDFGIGYDNYYSTHSPENKQ
                     FSQDIYRALKANGKIESRVIEQLFDPEKQMFLPDRFVKGECPKCHAQDQYGDNCEVCG
                     TTYSPTELINPYSAVSGAKPELRESEHFFFKLDECADFLKAWTSGNNPHDGKPHLQPE
                     ALNKMKEWLGEGEETTLSDWDISRDAPYFGFEIPDAPGKYFYVWLDAPVGYMASFKNL
                     CDRIGIDFDEYFKAGSQTEMYHFIGKDILYFHALFWPAMLHFSGHRAPTGVYAHGFLT
                     VDGQKMSKSRGTFITAKSYLEQGLNPEWMRYYIAAKLNSKIEDIDLNLQDFISRVNSD
                     LVGKYVNIAARASGFIAKRFEGRLKDVADSALLAKLTAQSEAIAECYESREYAKALRD
                     IMALADIVNEYVDANKPWELAKQEGQDERLHEVCSELINAFTMLTAYLAPVLPKVAEN
                     AAKFLNLEAITWANTRETLGEHAINKYEHLMQRVEQKQVDDLIEANKQSIAAAAVPAA
                     EESKYEKVAEQASFDDFMKIDMRVAKVLNCEAVEGSTKLLKFDLDFGFEKRIIFSGIA
                     AFYPNPAELNGRMVIAVANFAPRKMAKFGVSEGMILSAATADGKLKLLDVDAGAQPGD
                     KVG"
     gene            complement(4257..6095)
                     /gene="glmS"
                     /locus_tag="WHR98_001407"
     CDS             complement(4257..6095)
                     /gene="glmS"
                     /locus_tag="WHR98_001407"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEZ2308080.1"
                     /translation="MCGIVGAIRAHHNVVDFLTDGLKRLEYRGYDSSGIAVNTDGNIK
                     RVRRVGRVQLMEDAAREKHLNGSLGIGHTRWATHGGVTEPNAHPHISGGMIAVVHNGI
                     IENFESERKRLEDLGYRFESQTDTEVIAHSINHEYAQNGGRLFEAVQEAVKRFHGAYA
                     IAVIAQDKPDELVVARMGCPLLVALGDDETFIASDVSAVIAFTRRVAYLEDGDIALLA
                     SDGIKRLTDKNGLPAERKVKVSELSLASLELGPYSHFMQKEIHEQPRAIADTAEVFLD
                     GGFIPENFGKNAKSVFESIRSVKILACGTSYYAALTAKYWLESIAKIPADVEIASEYR
                     YRSVIADPDQLVITISQSGETLDTMEALKYAKSLGHRHSLSICNVMESALPRESSLVL
                     YTRAGAEIGVASTKAFTTQLVALFGLAVTLAKVRGLVSEEDEARYTEELRQLPGSVQH
                     ALNLEPQIAAWAQQFAKKTSALFLGRGIHYPIALEGALKLKEITYIHAEAYPAGELKH
                     GPLALVDENMPVVVIAPNDSLLDKVKANMQEVGARGGELFVFADLDSNFNATEGVHVI
                     RAPRHVGELSPVVHTIPVQLLSYHVALARGTDVDKPRNLAKSVTVE"
     gene            6374..6892
                     /locus_tag="WHR98_001408"
     CDS             6374..6892
                     /locus_tag="WHR98_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308081.1"
                     /translation="MKQMLLTVGVAAVLAGCGKDAGGYEGYWREKSDKKEGMIAVKKE
                     KGNYFLNKINVVTGKEESMLLSEKDGALSINTGIGEIPIKLSDDGKELYVERRQYVKT
                     DAAMKDKIIAHQKKCGQTAQAYLDARKALPSNQTYQQHQAAIEQLKRRFEAEFDELEK
                     EIKCNGKPTLLF"
BASE COUNT         1490 a         1668 c         2105 g         1784 t
ORIGIN      
        1 gatgtaggtt cgtgggaatg acggtttagg tatttttata gaaagccgta ggtggtgttt
       61 ctatgcaaac ggcagatgct gcgtcgcggc aggttgacgg caggtgcttg gtgtcgatct
      121 tcttggcggt gtcggtgtcg gcggcgacgg tgtcgtcttt ggcggtgtcg ttgcgcgtaa
      181 ccggctgtcc gcagaaccat tttaccgaac cgtcttgacg cttggcccac agggagagtt
      241 ttttgtcttt gatttcgttg tttacgttgc ttgaagccat tatgtcagac ggtattgccc
      301 gggcagcttt attcgtacac tttcagcagc tcgacttcaa atatcaaagt ggcgtgcgga
      361 ggaatcacgc cgcccgcgcc gcgtgcgccg tagcccattt ccgaagggat ggtcagcttg
      421 cgtttgccgc cttccttcat tccgccgaag ccttcgtccc agcctttgat gacttgtccg
      481 acaccgagcg tgatggtcag cggctggcgg cggtcgaggc tggagtcgaa tttggttccg
      541 ttttccagcc aacctgtgta atgcacggta atctctttgc ctttaactgc ttcttttccg
      601 aagccttctt gcaagtcttc aataatcagg ccgcccatat ttgtcctttc attgcttgtt
      661 ggtcaaaacg gcaagggtaa cataccgtcc gtcgaagtca aatgccgctc aaacgtcagc
      721 tgcatcggtg cagctgaaac ggctgtgttt gttggactgt tttatttttt tcgtaaaggt
      781 tccatgcttt ttcatggaaa tagaaaacga cggtgttgat taggggctcg accagcgcga
      841 ccgcccccga tacgcctata ctgcccgtca gtacataggt tacactgaag gcggtgctga
      901 aatgcagtgc ggcaaaagtc agggttttaa gcatcatcct ctcccgaatt ggacattgac
      961 ggaggaatga taaaggttat cataaggttg cgcggtttaa atttgctatt tgttgttagt
     1021 gtaaataaat catttttcaa atggggatag aaattatgaa tcataaaaag atcgttgttt
     1081 tggatgcgga tactttgccc ggccgggttt ttcattttga ttttccgcac gagcttgcgg
     1141 tttacggtac gacaggtgcg gatgaaacgg cagaacgggt gcgcgatgca catattgtca
     1201 ttactaacaa agtgatgatt tctgccgata ttattgcggc taatccgcag ttggagctga
     1261 ttgccgtcag tgcgaccggt gtgaacaatg tcgatattgg ggcggcgaag gcggcgggcg
     1321 ttgcggtatg caatgtccgc gcctacggaa acgaatcggt tgcggaacac gcctttatgc
     1381 tgatgattgc gttaatgcgg aatctgcctg cctatcagcg tgatgttgcg gccggtttgt
     1441 gggaaaagtc gccgtttttc tgccattacg gcgcgccgat tcgggatttg aacggcaaaa
     1501 cgctggcggt tttcggacgc ggcaatatcg gacggacgct tgccggatac gcgcaggcat
     1561 tcggtatggg ggtggtgttt gccgaacaca aacacgcgcc cgacgtgcgc gaaggctatg
     1621 tttcctttga agatgcggta cagactgccg acgtgttgtc gctgcactgt ccgctgaacg
     1681 cccaaactga aaatatgata ggcgaaaacg aattacagca gatgaagccc ggtgcggttt
     1741 tgattaattg cgggcgcggc gggctggtgg atgaaaacgc gctgcttgcc gcactcaaat
     1801 acgggcagat cggcggggcg ggtgtcgatg ttttgacgaa tgagccgccc aaaaacggca
     1861 atcccttgct gaatgcacga ttacccaatc tgattgttac gccgcatacc gcgtgggcaa
     1921 gtcgtgaggc tttggacagg ctgtttgata tattgttggc gaacattcac gcctttgtga
     1981 aaggagaggc gcaaaaccgc gtggtttgag cttgtcggga tgacggaaaa caatgccgtc
     2041 tgaacgccca aagggttcag acggcatttt ttgagattcc tgtttaaccg actttgtcgc
     2101 ccggttgcgc gcctgcgtcg acatcaagca gtttcagttt cccgtctgcc gtggcggcac
     2161 tcaaaatcat gccttcggat acgccgaatt ttgccatttt gcgcggggcg aagttggcga
     2221 cggcgatgac cattcttccg tttaactcgg cagggttggg gtaaaacgcg gcgatgccgg
     2281 agaagatgat acgtttttca aaaccaaaat cgaggtcgaa tttcaggagt ttggtgctgc
     2341 cttcgacggc ttcgcagttc aatactttag cgacgcgcat gtcgattttc ataaagtcgt
     2401 caaagctggc ctgttcggca actttttcgt atttgctctc ttcggcggca ggcacggctg
     2461 cggcggcgat gctttgtttg ttggcttcga ttaaatcgtc cacttgtttt tgctccactc
     2521 gttgcattaa atgttcgtat ttgttgatgg cgtgctcgcc caaggtttcg cgtgtatttg
     2581 cccaagtgat ggcttccaaa ttcaggaatt tggcggcgtt ttcggccact ttcggcaaca
     2641 cgggggcgag gtaggcggtc agcatggtaa aggcgttgat gagttcgctg catacttcgt
     2701 gcaggcgttc gtcttggcct tcttgtttgg cgagttccca aggtttgttg gcatcaacgt
     2761 attcgttgac aatgtctgcc aaggccatga tgtcgcgcag ggctttggcg tattcgcggc
     2821 tttcgtagca ttcggcaatg gcttcgcttt gtgcggtcag ttttgccaat aatgcgctgt
     2881 cggcgacgtc tttcaaacgg ccttcaaagc gtttggcaat gaaacctgac gcgcgggcgg
     2941 cgatgttgac gtatttgccg acgaggtcgc tgttgacgcg cgagataaag tcttgcaggt
     3001 tcaaatcgat gtcttcgatt ttgctgttga gtttggcggc gatgtagtag cgcatccact
     3061 cggggtttag gccttgttcc agataggatt ttgcggtgat gaaggtgccg cgcgatttgg
     3121 acattttttg tccgtcgacg gtcaaaaagc cgtgtgcgta cacgccggtc ggggcgcggt
     3181 ggccggagaa atgcagcata gcgggccaga acagggcgtg gaaatagagg atgtctttgc
     3241 cgatgaagtg gtacatctcg gtttggctgc cggctttgaa gtattcgtca aaatcgatgc
     3301 cgatgcggtc gcacaggttt ttaaacgatg ccatgtagcc gacgggcgcg tccagccaga
     3361 cgtagaagta tttgcccggc gcgtcgggga tttcaaaacc gaaatacggc gcgtcgcggg
     3421 aaatgtccca gtcggacagg gtggtttctt cgccttcgcc cagccattct ttcattttgt
     3481 tgagggcttc gggttgcaga tggggcttgc cgtcgtgcgg attgttgccg gaagtccatg
     3541 ctttgaggaa gtcggcgcat tcgtccagtt tgaagaagaa gtgttcggat tcgcgcaatt
     3601 cgggtttcgc gccggaaacg gcggaatacg ggttgatcag ttcggtcggg gaataggtcg
     3661 tgccgcagac ttcgcagttg tcgccgtatt ggtcttgggc gtggcatttc gggcattcgc
     3721 ctttgacgaa gcggtcgggc aggaacattt gtttttcggg gtcgaaaagc tgctcgatga
     3781 cgcggctctc aatcttgccg ttggctttca gcgcgcggta aatgtcttgg gaaaactgtt
     3841 tgttttcagg ggaatgggtg ctgtaataat tgtcgtaacc gatgccgaaa tcggtaaagt
     3901 cggcgaggtg ctcttcgcgc actttggcaa tcatgtcttc gggcgcgatg ccttgttttt
     3961 gcgcggcaag catcacgggc gtgccgtggg tgtcgtcggc gcagcagtag tggcattcgt
     4021 ggccgcgcag tttttggaag cgaacccaaa cgtcggtttg gatgtgttcg accatgtggc
     4081 cgaggtggat gctgccgttg gcatagggca gggcggaggt aactaagatt ttgcgtgtca
     4141 tattgtgctt tgcaaacaat gggtaaaggc ggattatacc gcaaatcaaa cggggaaatg
     4201 ccgtctgaag cctgaaaaat caggcttcag acggcatgtt cgcaaacaat ccggacttat
     4261 tcgaccgtaa cggatttcgc caggttgcgc ggtttgtcca catcagtacc gcgtgcgagg
     4321 gcgacatggt aggaaaggag ctgcacgggg atagtatgca cgacggggga taattctccg
     4381 acatggcgcg gtgcgcggat aacgtgcacg ccttcggtag cattaaaatt gctgtcgagg
     4441 tcggcaaaga cgaaaagttc gccgccgcgc gcgccgactt cctgcatatt ggctttgact
     4501 ttgtccaaca ggctgtcgtt gggtgcgatg acgacgacgg gcatgttttc gtccaccaag
     4561 gcaagcggcc cgtgcttcag ttcgccggca ggataggctt cggcgtggat gtaggtgatt
     4621 tccttcagtt ttaacgcgcc ttcgagggca atcgggtaat ggatgccgcg ccccaaaaac
     4681 agcgcgctgg ttttcttggc aaactgttgc gcccaggcgg caatttgcgg ttcgaggttt
     4741 aaagcgtgct gcacgctgcc gggaagctgg cggagttctt cggtgtaacg tgcttcgtct
     4801 tcttcggaaa ccaaaccgcg cactttcgcc agcgttaccg ccaaaccgaa cagcgcaacc
     4861 agctgcgtgg taaatgcttt ggttgaggcg acgccgattt ccgcaccggc acgggtataa
     4921 agcacgaggc tgctttcgcg cggcagggcg gattccatca cgttgcagat ggagaggctg
     4981 tggcggtgtc ccaaggattt tgcgtatttc aacgcctcca tcgtgtccag cgtttcgccg
     5041 gattgggaaa tggtaatgac cagttggtcc ggatcggcaa tcacgctgcg gtatcggtat
     5101 tcgctggcga tttcgacatc ggccgggatt ttggcgatgg attccaacca atatttggcg
     5161 gtcagcgcgg cgtaatagga cgtgccgcag gcaaggattt tgacgctgcg gatgctttca
     5221 aacacgcttt tggcgttttt gccgaagttt tcggggatga agccgccgtc gaggaaaacc
     5281 tccgccgtgt ctgcaatcgc gcgcggctgc tcatggattt ccttttgcat aaagtggctg
     5341 tacggtccca gttccaaaga ggcgagcgag agttcggata ccttgacttt gcgttcggca
     5401 ggcaggccgt ttttatcggt cagccttttg atgccgtctg aagccagcag cgcgatgtcg
     5461 ccgtcttcga ggtacgccac gcggcgcgta aaggcgatga cggcggatac gtccgaagcg
     5521 ataaaggttt catcgtcgcc caaagcgacc aaaagcgggc agcccatacg cgccacgact
     5581 aattcatcag gcttgtcttg ggcaataacc gcgatggcgt atgcgccgtg gaaacgtttg
     5641 accgcttcct gcacggcttc aaacagcctg ccgccgtttt gcgcgtattc gtgattgatg
     5701 ctgtgggcga tgacttcggt atccgtttgc gattcaaaac ggtatcccaa atcttccaaa
     5761 cgtttgcgtt cgctttcaaa gttttcgatg atgccgttgt gcacgaccgc aatcataccg
     5821 ccgctgatgt gcgggtgggc gttcggctcg gtaacgccgc cgtgtgtcgc ccagcgcgta
     5881 tgcccgatgc ccaaactgcc gttcaaatgc ttttcacgcg ccgcatcttc cattaactgc
     5941 acgcgcccga cacggcgcac gcgcttgatg ttgccgtcgg tgttgacggc aatgcctgat
     6001 gaatcataac cccggtattc gaggcgtttg agaccgtcgg tcagaaaatc gacgacattg
     6061 tgatgggcgc ggatagcgcc gacgataccg cacataactg ttccttagta tccggttgaa
     6121 aaaaaaacag gcgcggacgg ctcccgtgcc gcaccttccg cttcggatta taaaccgcct
     6181 cccgcgccgg aaaacagcaa aatgccgtct gaaggcttgg gcttgctcaa aaaaaggagg
     6241 gatttccccg cccaggatgg gcgttcagac ggcattgcct gctgctggtt tatagttttt
     6301 acaaatcaat attgacaagc tgaaaaaaaa aaacaatata ctcacccgat cttaatgtta
     6361 aaggagtatg gaaatgaaac aaatgctttt gaccgtcggc gtggcggcgg tgttggcagg
     6421 ctgcggcaag gatgccggcg gttacgaggg ttattggcgc gaaaagtcgg acaaaaaaga
     6481 gggtatgatt gccgtcaaaa aagaaaaagg caattacttc cttaataaaa tcaacgtggt
     6541 tacaggtaag gaagaatcta tgcttttgtc tgaaaaagac ggcgcgcttt cgataaacac
     6601 ggggataggg gaaatcccga ttaaactttc cgacgacggg aaagagctgt atgtcgaacg
     6661 caggcagtat gtgaaaaccg atgcggcgat gaaggacaaa atcatcgccc atcagaaaaa
     6721 gtgcggacaa acggcacagg catacctcga cgcacgaaag gcgttgccgt caaaccagac
     6781 gtatcagcag catcaggcgg cgatcgagca gttgaaacgg cggtttgaag ccgagtttga
     6841 cgaattggaa aaagaaatca aatgcaacgg caaaccgaca ttgttgtttt agcgtaggac
     6901 aaccgggagg atgccgccgt ccgaatcgga cgtgcggttt ctgtaccggt acgggcgggc
     6961 aggaatgtcc gctttttttg ttcggacgcg tttgaatacc cgtttgattc cgtccgtttg
     7021 caaagggtat ttttgttcgg gcggaaa
//
LOCUS       DAWGNT010000102         7030 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.102, whole genome shotgun sequence.
ACCESSION   DAWGNT010000102 DAWGNT010000000
VERSION     DAWGNT010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 7030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7030
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.102"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..388)
                     /locus_tag="WHR98_001409"
     CDS             complement(<1..388)
                     /locus_tag="WHR98_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
                     /protein_id="HEZ2308082.1"
                     /translation="MKEWIVGQSGELFCFGQMPVWKAENLPEVLLSGYSSEEGEWVCL
                     NVLQGDVEVRTQDGAAEVWSAESGDCVFAPQQVFSVKLKTDDAEIRLSLYCAAADYFH
                     KKYGMSATHSAVAAARDTVPAGRALDM"
     gene            502..939
                     /gene="rnhA"
                     /locus_tag="WHR98_001410"
     CDS             502..939
                     /gene="rnhA"
                     /locus_tag="WHR98_001410"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEZ2308083.1"
                     /translation="MDKTVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTN
                     NRMELTAVIEGLKSLKRRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDD
                     LWKELDALVGRHQVSWTWVKGHAGHAENERADDLANRGAAQFS"
     gene            2043..2186
                     /locus_tag="WHR98_001411"
     CDS             2043..2186
                     /locus_tag="WHR98_001411"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308084.1"
                     /translation="MTDNGLQTASGGISCLPLKQLAAQLFKRVRYVSTHRTTHKAPPY
                     VSS"
     gene            2363..2767
                     /locus_tag="WHR98_001412"
     CDS             2363..2767
                     /locus_tag="WHR98_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEZ2308085.1"
                     /translation="MTAQPCPICTAQDEDILLQTPKLRVIAVHNDSGSPAFCRVIWRK
                     HIAEMTDLSAAERGELMEMVYKVEAAMRQVFQPAKINLASLGNVVPHLHWHIIARFEN
                     DASFPAPIWANPVRKHGMTLPQDWTEQLKKLL"
     gene            2807..3991
                     /locus_tag="WHR98_001413"
     CDS             2807..3991
                     /locus_tag="WHR98_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEZ2308086.1"
                     /translation="MTEPTSRRRFLKTCTAAAGAGLLQACGTSATSVPPLPSSHSVVK
                     ARTVPLQTPRRQSSDGNLLRVVASSGFAEDTNRVNTALTRLYNVGFTVTNQQAGSRRF
                     QRFAGTDAQRVADFQEVASGRVATPKVLMGLRGGYGAARILPHIDFASLGARMREHGT
                     LFFGFSDVCAVQLALLAKGNMMSFAGPMAYSDFGKPAPGAFTMDAFIKGATQNRLTVD
                     VPYIQRADVETEGILWGGNLSVLASLAGTPYMPDIDGGILFLEDVGEQPYRIERMLNT
                     LYLSGILKKQRAIVFGNFRMEKIRDVYDPSYDFSAVANHVSRTAKIPVLTGFPFGHIA
                     DKITFPLGAHARIRMNGNGGYAVAFEGYPTLDASALTLDTLLPPPDLPIFPESGVADI
                     SE"
     gene            complement(4054..4587)
                     /locus_tag="WHR98_001414"
     CDS             complement(4054..4587)
                     /locus_tag="WHR98_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEZ2308087.1"
                     /translation="MGIYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQYEAL
                     QKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANT
                     APLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERF
                     APSVTPEEIEADIRALL"
     gene            complement(4766..7021)
                     /locus_tag="WHR98_001415"
     CDS             complement(4766..7021)
                     /locus_tag="WHR98_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric-oxide reductase large subunit"
                     /protein_id="HEZ2308088.1"
                     /translation="MGQYKKLWYLLFAVLAVCFTILGYMGSEVYKKAPPYPEQVVSAS
                     GKVLMTKDDILAGQSAWQTTGGMEVGSVLGHGAYQAPDWTADWLHRELSAWLDLTAQQ
                     TYGKKFDEVSPEEQAVLKTRLADEYRNQSRIKEDGSVVISDTRVKAIESILPYYHGVY
                     GDDPALQTTREHFAMKNNTLPSQEAREKLFDFFFWTSWSASTNRPDETFTYTNNWPHE
                     PLINNVPTTENYMWSFTSVVLLLMGIGLLMWGYSFLTKHEEVEVPSEDPISKIQLTPS
                     QKALGKYVFLTVALFVVQVLLGGLTAHYTVEGQGFYGIDEALGFEMSDWFPYALTRTW
                     HIQSAIFWIATGFLTAGLFLAPIVNGGKDPKFQRAGVNFLYIALFIVVGGSYAGNFFA
                     LTHILPPELNFWFGHQGYEYLDLGRFWQLLLMVGLLLWLFLMLRCTISAFKEKGVDKN
                     LLAIFVASMVGVGVFYAPGLFYGEKSPIAVMEYWRWWVVHLWVEGFFEVFATAAFAFV
                     FYNMGFVRRSTATASTLAAAAIFMLGGVPGTLHHLYFSGSTSASMAIGACFSALEVVP
                     LVLLGREAYEHWSYQHLSDWAKRLRWPLMCFVAVAFWNMIGAGVFGFLINPPISLFYI
                     QGLNTSAVHAHAALFGVYGFLALGFVLLVARYLKPNAQFDDKLMTWGFWLLNGGLVGM
                     IAISLLPVGAIQAYASITHGLWYARSEEFLQMEILDTLRWVRTAADLVFIGGAICVAI
                     QATKIVFGRDK"
BASE COUNT         1801 a         1963 c         1769 g         1497 t
ORIGIN      
        1 ccatatccaa cgccctgccc gccggtacgg tatcccgtgc cgccgcgacc gcagaatgcg
       61 tggcactcat cccgtatttt ttgtgaaaat agtctgccgc cgcgcaatac agcgacaaac
      121 ggatttcggc atcgtccgtt ttcagtttga ccgaaaacac ctgctgcggc gcaaacacgc
      181 aatcgccgct ttctgccgac caaacctccg ccgccccgtc ctgcgtgcgg acttcgacat
      241 cgccctgcaa cacattcagg cagacccact ccccttcctc agacgaatag cccgacaaca
      301 aaacttccgg caggttttcc gccttccata cgggcatctg tccgaaacaa aacaactcgc
      361 cgctttgacc cactatccac tccttcatat tcaaaaataa agttgcacat tatatgccta
      421 ttttaatccg ccgcaatctt tcagacggca cggcgcacaa accgcttata atcacgccgg
      481 acaccacaca aaggcacaat aatggacaaa accgtttacc tttacaccga cggcgcgtgc
      541 aaaggcaatc ccggagcggg cggctggggc gtattaatgc gctacggcag ccacgaaaaa
      601 gaacttttcg gcggcgaggc gcaaaccacc aacaaccgca tggagctgac cgccgtcatc
      661 gaaggactga agtccctcaa acgccgctgc accgtcatca tctgcaccga ctcgcaatac
      721 gtcaaaaacg gcatggaaaa ctggatacac ggttggaagc gcaacggctg gaaaaccgcc
      781 gccaaacagc ccgtcaaaaa cgacgacttg tggaaagaac tcgacgcgct ggtcggacgg
      841 caccaagtca gctggacttg ggtgaaagga cacgcgggac acgccgaaaa cgaacgcgcc
      901 gacgatttgg caaaccgtgg cgcggcgcag ttttcctgag tgccgcaccg acaggaaaat
      961 gccgtctgaa accgctaatg ggctttagac ggcatcgtcc tccaccgtca ttcccgctca
     1021 ggcgggaatc cagaccgtcg ggcaacggca atattcaaaa gccgtctgaa aatttagagg
     1081 ctctagattc ccgcttttgc gggaatgacg aaaagttgcg gacagcagag gaatgacgag
     1141 gtttcagacg gcattggggg ctttgtcggg cttcaggcgg catccgaccg ccccgtcatt
     1201 cccgcgaaag cgggaatcta aaaacccaac gctgcaaaaa tttatttaga aacaactgaa
     1261 accgctccac cgtcattccc gcgcaggcgg gaatccagtc cgtcgggtaa cggcaatatt
     1321 caaagattat ctgaaagttt gaagttctag attcccattt tcacgggaat gacgaaaagt
     1381 tgcaggaatg acggagtttc aggcggcatc cgaccgccca gtcattcccg cgaaagcggg
     1441 aatctaaaaa tccaacgctg caaaaattta tttagaaaca actgaaaccg ctctgccgtc
     1501 attcccgtgc aggcgggaat ccagaccttc gggtaacggc aatattcaaa agccgtgtga
     1561 aaatttaaaa ggtctagatt cccgctttca cgggaatgac gaagagctgc gggaatgacg
     1621 ggattttagg tttctgattt tgtttttctg tttttgaggg aatgacggga tttgagattg
     1681 cggcatttat cgggagcaac tgaaaccgct ccaccgtcat tcccgcgcaa gcgggaatcc
     1741 aaaccgtcgg gcaacggcaa tattcaaaga ttatctgaaa gtttgaagtt ctagattccc
     1801 gttttcacgg gaatgacgaa aagttgcaag aatgacggag tttcaggcgg catccgaccg
     1861 ccccgtcatt cccgcgaaag tgggaatcta aaaacccaac gctgcaagat ttatcagaaa
     1921 caactgaaac cgaacggact ggattcccgc ctgcgcggga atgacgggat tttagtaacc
     1981 gtagcaaccg cctgcgcgac ggctaagggg cttcagcaac cgtagcaact gcctgtgtgg
     2041 gaatgacgga caatgggctt cagacggcat caggcggcat ctcttgcctg ccgctaaaac
     2101 agcttgccgc acaactgttc aaacgcgtcc gatatgtttc aacacacagg acgacacata
     2161 aagcaccgcc ctatgtgtcg tcctgatttg ggaggggtta cacccctccc aaataaagtc
     2221 tgttcctgcc gccacaaagg acggggtttc aaccgaaaag gaaacacgat gaagtggtac
     2281 aattaacggc gatgcggaca gacagattga aatattaaaa attaccctac cgttttttaa
     2341 acactttcag gaataaggaa aaatgaccgc ccaaccctgc cccatctgca cggcacaaga
     2401 tgaagatatt ttgctgcaaa cccccaagct gcgcgtcatc gccgtccata acgacagcgg
     2461 ttcgcctgca ttctgccgcg tcatttggcg taagcatatt gccgaaatga ccgacctttc
     2521 ggcagcggaa cgcggcgaat tgatggaaat ggtgtacaaa gtcgaagccg ctatgcgcca
     2581 agtgtttcaa cctgccaaga ttaacctcgc cagcttgggc aatgtcgtgc cgcacctgca
     2641 ttggcatatt atcgcccgct ttgaaaacga tgcgtccttc cccgcgccga tttgggcaaa
     2701 ccccgtccgg aaacacggta tgaccctgcc gcaagattgg acggaacagc ttaaaaagct
     2761 gctttaagcc cgccgatgcc gtctgaaacc gtatgaaagg gaaattatga ccgaaccgac
     2821 ctcccgccgc cgttttctga aaacctgcac cgccgctgcc ggcgcggggc tgcttcaggc
     2881 ttgcggcaca tccgccacat ccgttccgcc ccttccctct tcccattccg ttgtgaaagc
     2941 ccgaaccgtg cctctccaaa cgccacgccg tcaaagttcg gacggcaacc ttctgcgcgt
     3001 tgtcgcttcg tcaggatttg ccgaagacac caaccgcgtc aacacagcct taacccgcct
     3061 ttacaatgtc ggttttaccg taaccaacca acaggcgggc agccgccgct tccaacggtt
     3121 tgctggtacg gacgcacaac gtgtcgccga tttccaagag gtcgcttccg gccgcgtcgc
     3181 cacgcctaaa gtgctgatgg gcttgcgcgg cggttacggt gcggcgcgga ttctgccgca
     3241 tatcgatttt gcttcgctcg gcgcaaggat gcgcgaacac ggcacgctgt ttttcggatt
     3301 cagcgacgta tgcgccgtcc agctggcatt gttggcaaaa ggcaatatga tgagttttgc
     3361 cggcccgatg gcttatagcg attttggcaa acccgccccc ggtgcgttta cgatggatgc
     3421 ctttatcaag ggtgcaaccc aaaaccgcct gaccgttgat gttccttata tccaacgcgc
     3481 cgatgtcgaa accgaaggca tattgtgggg cggcaactta agcgtcctcg cctcgctcgc
     3541 cggcacgcct tatatgcccg acatcgacgg cggcattttg ttcctcgaag atgtcggcga
     3601 acagccctac cgcatcgaac gtatgctcaa tacgctgtat ctttcgggta ttttgaagaa
     3661 acagcgcgcc atcgtgttcg gcaatttccg tatggaaaaa attcgagatg tctatgatcc
     3721 gtcttatgat ttttctgccg ttgccaacca tgtttcgcgc acggcgaaaa tccccgtgct
     3781 gacgggcttc ccgttcggac acattgccga caaaatcact ttccctctgg gcgcgcacgc
     3841 ccgaatccgt atgaatggaa acggcggtta tgcggtcgcg tttgaaggct accccacact
     3901 cgatgcgtcc gccctgactt tggataccct gctcccaccg ccggatttgc ctatcttccc
     3961 cgaaagcggt gttgccgata tttcggaata aacccgcaaa cggacaaatg ccgtctgaag
     4021 ccttcagacg gcatttccca agacggcggc agattacagc aatgcccgaa tatcggcttc
     4081 gatttcttcg ggcgtaacac taggcgcaaa acgctcgacc acttcgccgt cgcggttgac
     4141 gaggaatttg gtaaagttcc atttgatgtc gccttcgtcg cgcttctctc ccaaagctgc
     4201 gagcttcaac acgaaatctt taaacagatg attgccttta tcttgcggtt tgacggattt
     4261 caggtaggca tacaagggcg cggtatttgc tccattgact tcgattttgt cgaaaatctt
     4321 aaacttcgtg ccaaacttca tcatacacac ttgggcaatt tctccgctgc tttcgggagc
     4381 ctgttcgcgg aactggttgc acggaaaatc caaaatctcc aagccttctg cggtatattg
     4441 tgcatacagc ttctgcaaag cctcgtattg cggggtcaga ccgcaacgcg ttgccgtgtt
     4501 gacaatcagc agaaccttgc cgcgatagcc tgacaaatca accgcattgc cttccgcatc
     4561 tttcatttga aaatcgtaaa tacccatttt tatccttatc tgatgtaaac cgatgccatc
     4621 tgaaacgtgc ttcagacggc atgaaagcag caattgtata gccgattaaa ataaaaaatc
     4681 cacatccttt tccattcccg tcccaatccg caataaaaaa ctgcacccga aaacgggtgc
     4741 agttgctcat ttcataccgc aaaacttatt tgtcgcggcc gaatacgatt ttagtagctt
     4801 ggatggcaac gcagattgca ccgccgataa agaccaagtc agctgccgta cgtacccaac
     4861 gcaaggtatc gaggatttcc atttgcagga actcttcgct gcgggcatac cacagaccgt
     4921 gcgtgatgga ggcgtatgcc tgaatcgcgc cgacaggcag caggctgatg gcaatcatac
     4981 cgaccaagcc gccgttgagc agccagaagc cccaagtcat cagtttgtcg tcaaactgcg
     5041 cgttcggttt caaataacgg gcaaccagca atacgaagcc caatgccaag aaaccgtaca
     5101 caccgaacaa ggcggcgtgc gcatgaacag cagaagtatt caaaccttgg atatagaaca
     5161 gggaaatcgg cgggttaatc aggaaaccga atacaccggc accgatcata ttccaaaagg
     5221 cgactgccac gaagcacatc agcggccaac gcaggcgttt cgcccagtcg gacaggtgtt
     5281 ggtaagacca gtgttcgtat gcttcacggc ccagcaacac cagcggcacg acttccaaag
     5341 cggagaagca ggcaccgatt gccatagagg cggaggtaga gccggagaag tacaggtggt
     5401 gcagcgtacc cggaacgccg cccaacataa agatggcggc agcggccaga gtagaagctg
     5461 tggcggtact gcggcggaca aagcccatat tgtagaagac aaaggcaaaa gcggcagtgg
     5521 caaatacttc aaagaagcct tccacccaca ggtgaaccac ccaccaacgc cagtattcca
     5581 ttacggcaat cggggatttt tcgccataga acaggcctgg tgcgtagaat acgcccacac
     5641 cgaccataga agcgacaaag attgccagca ggtttttgtc cacgcctttt tctttaaagg
     5701 cggagatggt gcaacgcagc atcaggaaca gccacaacag cagaccgacc atcagcagga
     5761 gttgccagaa acggcccaaa tcgaggtatt cgtaaccttg gtgtccgaac cagaaattca
     5821 attcgggggg aaggatgtgc gtcaacgcga agaagttgcc cgcgtaagaa ccgccgacca
     5881 cgatgaagag ggcgatatag aggaagttca cgcctgcacg ttggaacttg ggatctttgc
     5941 cgccgttgac aatcggcgcg aggaacaaac ctgccgtcaa aaagccggtt gcaatccaaa
     6001 agatggcgga ttggatgtgc caagtacggg tcagggcata gggaaaccag tcggacattt
     6061 caaagcccaa cgcctcatcg atgccgtaga aaccctgacc ttcaacggtg tagtgcgcgg
     6121 tcaggccgcc cagcaatact tgtaccacaa acagggcaac cgtcaggaag acgtatttgc
     6181 ccaatgcttt ttgcgaaggg gtcagttgga ttttggaaat cgggtcttca gacggcactt
     6241 ccacttcctc gtgtttggtc aggaaggaat aaccccacat caacaaaccg atgcccatca
     6301 agagcagtac aacactggta aacgaccaca tatagttttc agtggtcggt acgttgttga
     6361 tcaaaggctc gtgcggccag ttgttggtat aagtgaacgt ctcgtcagga cggttggtcg
     6421 aagcagacca agaagtccag aagaagaagt cgaacagttt ttcacgcgct tcttggcttg
     6481 gcaatgtgtt gtttttcatt gcaaagtgtt cgcgggtggt ttgcagcgcg ggatcatcgc
     6541 cgtaaacacc gtgataataa ggcaggatgc tttcgatggc tttcacgcgc gtatcgctga
     6601 tgacgacgct gccgtcttct ttaatacggc tttggttgcg gtattcgtca gccagtcggg
     6661 ttttcagaac ggcttgttct tcaggggaaa cttcatcgaa ttttttgccg taagtctgtt
     6721 gcgcggtcaa atccaaccag gcggacaact cacgatgcag ccagtcggca gtccagtccg
     6781 gagcttggta tgcaccgtga cccaatacag agccgacttc cataccgccg gtagtctgcc
     6841 atgcagactg acctgccaaa atatcgtctt tcgtcatcaa gactttgccg gatgcggaaa
     6901 cgacctgttc ggggtaaggc ggggctttct tgtaaacctc gctgcccata tagccaagaa
     6961 tggtaaagca taccgccaga acggcaaaca gcaagtacca cagcttcttg tactgtccca
     7021 ttttgagagc
//
LOCUS       DAWGNT010000103         6972 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.103, whole genome shotgun sequence.
ACCESSION   DAWGNT010000103 DAWGNT010000000
VERSION     DAWGNT010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6972
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.103"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(76..1497)
                     /locus_tag="WHR98_001416"
     CDS             complement(76..1497)
                     /locus_tag="WHR98_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HEZ2308089.1"
                     /translation="MRHLPLFSLMLFPASVYAADLDGANLNLLWGLPFALILLSIALG
                     PLFFSHTWHHHYGKITAFWTLLFLIPFSLVFGASAGIHTVAHALVEEYIPFILLLLAL
                     YTISGGILVWGDLNGTPKLNTALLAVGTALASIMGTTGAAMLMIRPLLKANQNRTRRV
                     HIVIFFIFLVANIGGGLTPLGDPPLFLGFLKGVDFMWTVKHMFAPVLISTAVLLTAFY
                     FIDNRFFKQESIAQDTPAQQEKPEKIAIFGKWNFLLLSGVVGAVLMSGLWKPEHPGFE
                     ILGSRYALQNLVRDVILIALTAVSMAITPKQVRAGNEFNFEPIAEVGKLFLGIFITIF
                     PVLSILKAGEAGALGGVVSLVHDTAGHPINVMYFWMSGILSAFLDNAPTYLVFFNMAG
                     GDAQALMTGTLFHSLLAVSMGSVFMGALTYIGNAPNFMVKAIAEQRGVPMPTFFGYMM
                     WSVAFLTPVFIVHTLIFFVFKLL"
     gene            complement(1857..2216)
                     /locus_tag="WHR98_001417"
     CDS             complement(1857..2216)
                     /locus_tag="WHR98_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HEZ2308090.1"
                     /translation="MIRYLLIACGCISLLLGIIGIFLPLLPTTPFVLLSAACWAKASP
                     RFHRWLHRHRYFGPMVHNWEQNGAVPRKAKIFAISMMTASCLIMFWQFPQRWWVGAVS
                     SVFCSLVAIWMWRRPES"
     gene            complement(2213..2809)
                     /locus_tag="WHR98_001418"
     CDS             complement(2213..2809)
                     /locus_tag="WHR98_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1415 domain-containing protein"
                     /protein_id="HEZ2308091.1"
                     /translation="MDTDCFSHQEHIAQATRQWLEKAVIGLNLCPFSKAPYIKNLVRI
                     TISKARHLDGFLEDLDKELQILGKSMPSEIETTLLVHPTLFPDFSRFNDFLDLADTAI
                     IENGLEGIVQIAPFHPQFRFQNSEPDDIGNYTNRSPYPTLHLIREDSIAKAAQAFPDA
                     SAIFERNIALLEKMGHEGWAKLGITSCPYPHNKKNISK"
     gene            complement(2827..3309)
                     /locus_tag="WHR98_001419"
     CDS             complement(2827..3309)
                     /locus_tag="WHR98_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEZ2308092.1"
                     /translation="MPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLK
                     QLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFAL
                     TGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLLKE
                     "
     regulatory      3513..3610
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            3821..4921
                     /gene="gcvT"
                     /locus_tag="WHR98_001420"
     CDS             3821..4921
                     /gene="gcvT"
                     /locus_tag="WHR98_001420"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004519543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HEZ2308093.1"
                     /translation="MTALKTTPFHQAHQDAGAKPVDFAGWELPIHYGSQIAEHEAVRT
                     DAGMFDVSHMLVTDVAGANAKAFFRKLIANDVAKLAFVGKALYSALLNDNGGVIDDLI
                     VYRTNEAETQYRIVSNGATREKDTAQFHKVGQEFGVAFNPRYDLGMLAVQGPKAIEKL
                     LTVKPEWADVIHGLKPFQGADLGNDWFVARTGYTGEDGVEVILPGTEAGVFFKALQAA
                     GVQPCGLGARDTLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDESRDFVGKAALLA
                     LKEKGVAVKQVGLLLDKGGILRAHMEVLTDKGKGETTSGVFSPSLKQSIAIARVPKDF
                     DGDTAKVLMRGKEVDVRVLKLPFVRNGQKQFD"
     gene            5084..5470
                     /gene="gcvH"
                     /locus_tag="WHR98_001421"
     CDS             5084..5470
                     /gene="gcvH"
                     /locus_tag="WHR98_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEZ2308094.1"
                     /translation="MSNNIPAELKYVASHEWLRLEEDGTITVGITHHAQELLGDIVFV
                     ELPEVGANLAAEEQAGVVESVKAASDVYAPIAGEVVAVNEDLPSAPETANSDSYGAGW
                     FFKIKPVNPADYDGLLTAEQYAGEVD"
     gene            5622..6869
                     /locus_tag="WHR98_001422"
     CDS             5622..6869
                     /locus_tag="WHR98_001422"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEZ2308095.1"
                     /translation="MQLTAVGLNHQTAPLSIREKLAFAAACLPEAVRNLARSNAATEA
                     VILSTCNRTELYCVGDSEEIIRWLADYHSLPIEEISPYLYTLGMQETVRHAFRVACGL
                     DSMVLGEPQILGQIKDAVRVAQEQESMGKKLNALFQKTFSVAKEIRTDTAVGENSVSM
                     ASASVKLAEQIFPDIGDLNVLFIGAGEMIELVATYFAAKSPRLMTVANRTLARAQELC
                     DKLGVNAEPCLLSDLPAILHDYDVVVSSTASQLPIVGKGMVERALKQRQSMPLFMLDL
                     AVPRDIEAEVGDLNDAYLYTVDDMVNIVQSGKEARQKAAAAAETLVSEKVAEFVRQQQ
                     GRKSVPLIKALRDEGEKARKQVLENAMKQLAKGATAEEVLERLSVQLTNKLLHSPTQT
                     LNKAGEEDKDLVHAVAQIYHLDK"
BASE COUNT         1792 a         1675 c         1945 g         1560 t
ORIGIN      
        1 ttgtcggaag gggggatatt gatttgatta tgccggaatt taaaatgccg tctgaatgtt
       61 cagacggcat agcgtttaca gcagtttgaa aacgaaaaag ataagggtat gtacgatgaa
      121 gacgggtgtc aggaaggcga ccgaccacat catatagccg aagaaagtcg gcatcggtac
      181 gccgcgctgt tcggcaatgg ccttgaccat gaagttcggt gcgttgccga tgtaggtcag
      241 tgcgcccatg aataccgaac ccatagaaac cgccagcagc gaatgaaaca gggtacccgt
      301 catcaaggct tgggcatcgc cgcccgccat attgaaaaaa acgagataag tgggcgcgtt
      361 atccaagaat gccgacaata tgccgctcat ccaaaaatac atcacattaa tcggatgacc
      421 tgccgtatcg tgaaccagcg ataccacccc gcccagcgcg cctgcctcgc ctgctttcag
      481 aatgctcagg acgggaaaga tggtgatgaa gatgccgagg aagagtttgc ccacttcggc
      541 gatgggttca aagttgaatt cgttgcctgc gcggacttgt ttgggcgtga ttgccataga
      601 tacggcggtc aatgcaatca ggatgacatc gcggacgagg ttttgcaggg cgtaacggct
      661 gccgaggatt tcaaatcccg ggtgttcggg tttccaaagg ccggacatta gaaccgcgcc
      721 gaccacgccc gaaagcagga ggaagttcca tttgccgaag atggcgattt tttcgggttt
      781 ttcctgttgt gccggcgtat cttgtgcaat gctttcctgt ttgaagaaac ggttgtcgat
      841 gaaatagaag gcggtcaaca ggacagcggt gctgatcagg acgggggcga acatatgttt
      901 gaccgtccac atgaaatcta cgcctttgag gaagccgagg aagagtgggg ggtcgcccaa
      961 aggggtcaga ccgccgccga tgtttgcaac caggaaaatg aagaagatga cgatgtgcac
     1021 gcggcgggta cggttttggt tggctttcag cagcggacga atcatcagca ttgctgcgcc
     1081 ggtcgttccc atgatagagg caagtgccgt accgacggca agcagggcgg tgttgagctt
     1141 gggtgtgccg ttcaagtcgc cccaaaccaa aatgccgcct gaaatggtgt acagggcaag
     1201 cagcagcagg atgaaaggga tgtattcttc aacgagtgcg tgtgcgacgg tatggatacc
     1261 ggcggacgcg ccaaaaacca aactgaacgg gatgaggaag agcaatgtcc aaaaggcggt
     1321 aattttgccg taatggtgat gccaggtatg cgaaaaaaac aagggaccca atgcgataga
     1381 cagcaaaatc agggcaaagg gcaggcccca cagcaggttt aggtttgcgc cgtccaaatc
     1441 tgcggcgtaa accgatgctg ggaaaagcat tagtgaaaac aggggtaggt ggcgcatcgt
     1501 gtttcctcga ttcaagcact gccttgcgcg gcgcgtggga gtgatacagg caccgtgccg
     1561 cccggacata ggcggactgt gctgcctgtt tgtttttgaa aaaagttttc cgattgattg
     1621 taaagtaaat aatcaggata aaccagtttc ccaaaccgga aggcggcggg aaggcggatt
     1681 gctgtgcttg ggaatatatg ttctttttga taaataattt tatttaaaac aaataaatat
     1741 atgtctttaa taaataatct atcgaaaacg aaaaatgaat ttattttaac atatatttgc
     1801 aatgaaacag gtttgccccc cccgtttgtt tgcccttatc cctttcagta cggcattcaa
     1861 gattcgggcc tgcgccacat ccatatggcg acaagggaac aaaaaaccga tgaaaccgcc
     1921 ccgacccacc agcgttgggg aaactgccaa aacattatca ggcaggatgc ggtcatcata
     1981 ctgatggcga atattttggc tttgcgcggc actgcgccgt tttgttccca gttatgaacc
     2041 atcggaccga aatagcggtg ccggtgcagc cagcggtgaa agcgcgggga tgcctttgcc
     2101 cagcaggcgg cggagagcag tacgaacggc gtggtcggca acagcggcaa aaaaatgccg
     2161 atgataccca acagcaggga aatgcagccg caggcaatta aaagataacg tatcattttg
     2221 aaatattttt cttattgtgc ggataagggc aggatgtgat accgagtttt gcccagcctt
     2281 catgtcccat tttttccagc agggcgatat tgcgttcgaa tattgccgaa gcgtcgggaa
     2341 aggcttgtgc ggctttggca atgctgtctt cgcggatgag gtgcagcgtc ggatagggag
     2401 aacggttggt gtagttgccg atgtcgtcgg gttcgctatt ctgaaagcgg aattggggat
     2461 ggaacggtgc gatttggacg atgccttcca agccgttttc aataatggcg gtatcggcaa
     2521 gatcgagaaa gtcattaaac cggctaaaat cggggaataa ggtcgggtga accagtagcg
     2581 tggtttcaat ttcagacggc atcgatttgc ctaaaatttg caattccttg tctaaatctt
     2641 ctaaaaagcc gtctaaatgc cgcgccttgc tgatggtaat gcggacgagg tttttgatat
     2701 acggtgcttt ggaaaagggg cataaattca agccgataac ggctttttcc aaccattgcc
     2761 gggtggcttg ggcaatgtgt tcttgatgtg aaaagcagtc ggtatccata aatgggtatc
     2821 ggaaaatcat tctttcaaca aatggttgag cggcagggat gtggtgtgtt tgatttcttt
     2881 taaaacaaag ctcgattggg catcctgtac gccgtggtgg gacaggagcg tatccaaaac
     2941 aaaatgggaa aacgcgttca tatcggtaaa aaacgcctga agtaggtagt cggtttcccc
     3001 tgtcagggcg aagcagctca agacttccgg ccattttcgg accgatgcgg caaagtcttc
     3061 ccgcgcgtct tttgctttgc ggatggaaac gcggataaat gcctgaagcc ccaggttgac
     3121 ggattccgga gacagcagcg cggcatattg gcggacgatg ccggcatctt ccaactgctt
     3181 cagacggcgc aggcacggag aaggcgaaag tgcgacacgt tcggacagtt cgacattggt
     3241 cagcctgccg ttttcctgga gaacctgtaa gattttaata tcggttttgt ctaaagtgag
     3301 ttggggcata tttgcgttcc gttttaagga attcggattg tctgtccgta tgtttgcggc
     3361 aatccgcaca gatggagacc atattaacat ataaaaagtt ataccgtcat ccgggacaaa
     3421 ttttgttttc ggaaaatcat gtgaaaacag aggcggtcgg tttgcatctc ttttaagacg
     3481 gcttgcccaa accgccgatt caagacataa tcgggaaatg tgcaggagag tgttacaccc
     3541 aactacaatg taaccaccga aggcgcagac acccttaaat cgctcaggta tcagggactg
     3601 cacattgaaa caaacaatct ggagagcggc gttagaataa cgtccaccga aggggagaag
     3661 gccgtctgaa ccaccattca gacaaccgcg caaagcagtg agcagactgg tttgccatca
     3721 tgcggatacg gccgaaaatc tcaggttcaa ggacagatag ggtcatccgc gcataggtgc
     3781 gcgggcggca tctgaacaaa aaatccggag aaacttgaga atgactgctc tgaaaaccac
     3841 cccatttcat caagcccatc aagatgcagg cgcgaagccg gtagattttg ccggctggga
     3901 gctgcccatc cattatggtt cacaaatcgc cgaacacgaa gccgtgcgca ccgacgccgg
     3961 tatgtttgac gtatcccata tgcttgttac cgacgtagca ggcgcaaatg ccaaagcctt
     4021 tttccgcaaa ctgattgcca acgatgtcgc caaactcgct tttgtcggca aagcccttta
     4081 ttctgctttg ctcaacgaca acggcggcgt gattgacgac ttgatcgttt accgcaccaa
     4141 cgaggccgaa acccaatacc gcatcgtgtc caacggtgcg acccgcgaaa aagacacggc
     4201 gcaattccac aaagtcggac aagagttcgg cgttgccttc aatccgcgct acgacctcgg
     4261 catgctcgcc gtacaaggcc ctaaagccat cgaaaaactc ctgaccgtca aacctgaatg
     4321 ggcggatgtg attcacggcc tcaaaccgtt ccaaggtgca gacttgggca acgactggtt
     4381 tgtcgcccgc accggctata ccggcgaaga cggcgtcgaa gtgattctgc cgggtactga
     4441 agcaggcgta ttcttcaaag ccctgcaagc agcaggcgta cagccttgcg gcctcggcgc
     4501 acgcgacacc ctgcgcatgg aagccggtat gaacctctac ggcaacgata tggacgacga
     4561 caccagcccg ctcgaagcag gcatgggttg gacggttgat ttgaaagacg aaagccgcga
     4621 ttttgtcggt aaagccgcct tgctggcatt gaaagaaaaa ggcgttgccg tcaaacaggt
     4681 cggtctgttg ctcgacaaag gcggcatcct gcgcgcgcat atggaagtgt tgaccgacaa
     4741 aggcaaaggc gaaaccacca gcggcgtatt ctctccaagt ctgaaacaat ccatcgccat
     4801 cgcccgcgtg ccgaaagact ttgacggcga taccgccaaa gtgctgatgc gtggcaagga
     4861 agtggacgtg cgcgtattga agttgccgtt cgtgcgtaac ggtcaaaaac agtttgatta
     4921 atatcggttc agacggcatt ttcatttcat atgccgtctg aaagcaggtt ttaattgtcg
     4981 tccgatacgg atatttgtag aaagcattga acaaggcatc tgtggatatt gattcatgca
     5041 gatgccgtct gaaaataacc ccctaccaat ggagtatcaa accatgagca acaacatccc
     5101 cgccgaactg aaatacgttg ccagccatga atggctgcgc cttgaagaag acggtacgat
     5161 taccgtcggc attacccacc acgcgcaaga gctgttgggc gacatcgtgt tcgtcgagct
     5221 gcccgaagtc ggcgcgaacc ttgccgctga agagcaagcc ggtgtggttg agtctgtaaa
     5281 agccgcgtcc gacgtgtacg caccgattgc aggcgaagtc gttgccgtca acgaagattt
     5341 gccaagtgct ccggaaactg ccaacagcga ttcttacggc gcaggctggt tcttcaaaat
     5401 caaacctgtc aatcctgccg attacgacgg tctgctgact gccgaacaat acgcgggcga
     5461 agtagattaa accgcccggc tgcccgacgg caaccgccgg acaaacggaa actgcacctt
     5521 cagacggcat ttttgcggtc ggaggtgcag ttttttgtcc gtgttttaag gaagcagtta
     5581 ggctataata acggtctata ttcatcttta ccgatttttt catgcaactt accgctgtcg
     5641 gactcaatca tcaaaccgca cctttaagca tacgggaaaa gctggcgttt gccgcggcct
     5701 gcctgcccga agccgtccgc aatcttgccc gaagcaatgc ggcaacggag gcggtaatcc
     5761 tttctacctg caaccgcacc gagctttact gtgtaggcga ttcggaagaa atcatccgtt
     5821 ggctcgcaga ctatcacagc cttcccatag aagaaatcag cccctacctt tatactttgg
     5881 ggatgcagga gactgtgcgc catgctttcc gcgtcgcctg cggcttggat tcgatggtgt
     5941 tgggcgagcc gcagatttta ggacagatta aggatgcggt cagggttgct caagagcagg
     6001 aaagtatggg taagaaactc aatgccctgt tccaaaaaac cttttccgtt gctaaagaga
     6061 tccgtaccga taccgctgtc ggcgagaact cggtttccat ggcttccgct tccgtcaagt
     6121 tggcagagca gattttcccc gacatcggcg atttgaatgt cttgtttatc ggtgcgggtg
     6181 agatgattga gctggttgcc acttattttg ccgccaaaag tccccggctg atgacggttg
     6241 ccaaccggac gctggcgcgt gcacaggagt tgtgcgacaa gctcggtgtc aacgccgaac
     6301 cgtgcctgct gtccgatctg cctgccattc tgcacgatta cgacgtagtg gtttcttcaa
     6361 cggcgagcca gcttccgata gtcggcaaag gtatggtgga gcgcgcattg aaacagcgtc
     6421 agagtatgcc gctgtttatg cttgacttgg ccgtgccgcg cgatattgaa gcggaagtcg
     6481 gcgatttgaa cgatgcgtat ctttatacgg tggacgatat ggttaacatc gtccaaagcg
     6541 gcaaggaggc aaggcagaag gccgccgccg ccgccgaaac gctggtgtcc gagaaggttg
     6601 ccgaatttgt ccggcagcag cagggcagga agagcgtccc cttgattaaa gccttgcggg
     6661 acgagggcga gaaagcgcgc aagcaggtgt tggaaaatgc gatgaaacag cttgctaaag
     6721 gcgcaacggc agaagaggtt ttggaacggc tgtccgtcca actgaccaac aagctgctgc
     6781 attcgccgac ccaaactttg aataaggcgg gggaagaaga taaggatttg gttcacgccg
     6841 tcgcgcagat ttatcatttg gacaaataac ggtgcgctgg gaaaaatgcc gtctgaagag
     6901 gtttcagacg gcatattttt gtgccgcctg acaacatcgt gaaatcccac attatatcga
     6961 tgtaatcaca aa
//
LOCUS       DAWGNT010000104         6846 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.104, whole genome shotgun sequence.
ACCESSION   DAWGNT010000104 DAWGNT010000000
VERSION     DAWGNT010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6846
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.104"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(110..1243)
                     /gene="nrdB"
                     /locus_tag="WHR98_001423"
     CDS             complement(110..1243)
                     /gene="nrdB"
                     /locus_tag="WHR98_001423"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEZ2308096.1"
                     /translation="MSYSTFPKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQ
                     LSFFWRPEEIDVSRDRIDYANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDD
                     LIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFA
                     FAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQL
                     FKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPI
                     PWINAWLSSDNVQVAPQEVEISSYLIGQIDSEVNTDDLGDFEL"
     gene            complement(1304..2491)
                     /locus_tag="WHR98_001424"
     CDS             complement(1304..2491)
                     /locus_tag="WHR98_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II restriction enzyme"
                     /protein_id="HEZ2308097.1"
                     /translation="MNDLAAQTIQVVNKSDDLVASAIQTANKSIAVYCRYIRPNDVGT
                     TGSHQSGFYIQKHFSDDLFDVVCQKGTNKTISIKINWQDGSVTNSNFKYYGQGTRNEA
                     RITGFGKNFEFLSDKYSGSLLVLCRACYKDLLFHAFVLSSDEDIEIFIAETNILPGSL
                     YLPKKQEVEDNLTKLFSLFPNFPKTEEMAVLARENIALNKTNVSNVLKQWVSKEYELF
                     SIFEKREFEIIKSKITDLDSFINFAHSFTNRRKARAGKSLELHLSRIFDEFSLKFETQ
                     AKTEGKKKPDFLFPGSEEYHAMDESGNFIFQTEKLTMLGSKTTCKDRWRQVLNEADRI
                     PHKHLFTLQEGISDTQIQEMSDENLTLVVPKESVKTFGTFGKTHVLTLENFIKYIKSQ
                     QVS"
     gene            complement(2484..3497)
                     /gene="dcm"
                     /locus_tag="WHR98_001425"
     CDS             complement(2484..3497)
                     /gene="dcm"
                     /locus_tag="WHR98_001425"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HEZ2308098.1"
                     /translation="MKNKIQNQLDNIVTLNNEKFTFIDLFAGIGGFRIAMENVGGRCV
                     FSSEWDDKARQTYQVNFNDIPYGDITLKETKAAIPSKFDVLTAGFPCQPFSIAGVSKK
                     KSLGRETGFLDKAQGTLFFDVAEIIGKHRPKIFLLENVKNLVSHDKGNTFKVIKGTLE
                     ELDYQIFYQVMNAKYYVPQNRERIFIVGFDRQYFNKEINFNFPSPPESQPKLKQILED
                     DVDNSFTLSDNLWLYLQNYAKKHKAKGNGFGFGLVDLDGISRTLSARYYKDGSEILIP
                     QKGKNPRKLTPRECSRLMGFPKDFVIDAVSKTAAYKQFGNSIAVPLVQAIAKQIINEL
                     KNE"
     gene            complement(3555..5834)
                     /gene="nrdA"
                     /locus_tag="WHR98_001426"
     CDS             complement(3555..5834)
                     /gene="nrdA"
                     /locus_tag="WHR98_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEZ2308099.1"
                     /translation="MNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVE
                     LKSHIQFYNGIRTDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPP
                     HLYDHVKKLTDAAKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQ
                     NRVTRQIYETPQFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVR
                     TPTRQFSSCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEAR
                     HTGCIPFFKMFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQ
                     LDYGVQINRLLYTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK
                     RIIPAADLFSTLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKP
                     LDNINDPNGEIALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTS
                     TMGRRSLGIGVINYAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGA
                     CTLFNQTVYSQGKLPIDTYKKDLDAVCGEPLHYDWESLRAEIVKYGLRNSTLTALMPS
                     ETSSQIANATNGIEPPRGLVTVKASKDGILKQVVPEFETLKNAYETLWQLPGNEGYLK
                     LVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYHNTRDGA
                     DDTQTDIQDDGCAGGACKI"
     gene            6363..6674
                     /locus_tag="WHR98_001427"
     CDS             6363..6674
                     /locus_tag="WHR98_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein"
                     /protein_id="HEZ2308100.1"
                     /translation="MLAILLSAILGLVSTTAAAGTSEPAHRDTKHIRKANKQMLHPEC
                     RKYLERRAAWYRSQGNVQELRENKKARKAFRSLPYAEQKIQCRAAYEAFDDFDGGSFR
                     R"
BASE COUNT         1835 a         1525 c         1462 g         2024 t
ORIGIN      
        1 ccactataaa aggaacaata accgatccta cccgctgttt ttcccatcat acaacataca
       61 aatgccgtct gaaacatccg gcttcagacg gcattttttc aaaaaacatt tacaactcaa
      121 aatcgcccaa atcatccgta ttcacttcag aatcgatctg accgatcaaa taagaggata
      181 tttccacttc ctgcggcgcg acctgtacgt tgtcggacga cagccacgca ttaatccacg
      241 gaatcgggtt ttgatttgcg ccttcaaatc cggccggcaa ccccaccgcc tgcatacgca
      301 gattggtaat atattcgacg tattgggata agatttcttt gttcaaacca atcatcgaac
      361 cgtctttaaa caaatatgcc gcccattctt tttcctgttc cgccgctttt ttgaagagtt
      421 ggaaacattc gtcctgcaac tcggcggcaa tttctgccat ttcagaatca tcgacacccg
      481 aacgcatcag attaagcata tgctgcgtgc cggtcaggtg cagggcttcg tcgcgggcaa
      541 tcagtttgat gattttggcg ttgccttcca tcaactcgcg ctcggcaaaa gcaaacgagc
      601 aggcgaatga aacgtagaaa cggatggctt ccaacacatt gacgcacatc aggcagagat
      661 agagtttttt cttcaacccg cgcaaagaca cggtaacggg tttgccgccg acattgtgca
      721 ccccttcgcc caacaggttg taatactggg tgtattcgat taagtcatcg taatagcagg
      781 caatgtcttc ggcgcgggcg gtaatgtatt cgttttcgac aatatcatca aacacgaccg
      841 acggatcatt cacaatattg cggatgatgt gggtatagct gcgcgagtgg atggtttcgc
      901 tgaagctcca cgtttcaatc cacgtttcca actcgggaat cgaaaccaaa ggcagcaaag
      961 caacattcgg actgcgccct tggatggaat cgagcagtgt ttggtatttc agattgctga
     1021 tgaaaatatg tttttcgtgt tctggcaggt tggcgtagtc gatacggtcg cgcgacacgt
     1081 cgatttcttc cggccgccaa aaaaacgaca attgtttttc aatcagtttt tcaaatacct
     1141 cgtatttctg ctggtcataa cgggcgacat taaccggctg accgaaaaac atcggctcat
     1201 tcagcgcgtc gtttttggtt ttgggaaagg tgctgtatga catagttaag tgttcgcagg
     1261 acataatcta ttctctatat taattaaaaa tgatctgtaa gttttaacta acctgctgag
     1321 actttatata tttaataaaa ttttctaaag ttaaaacatg ggttttccca aaagttccaa
     1381 atgtttttac ggattcttta gggacaacta aggttaaatt ctcatcactc atttcctgaa
     1441 tttgagtatc agatatacct tcttgtagag taaataaatg cttatgagga attcgatctg
     1501 cttcatttaa aacttggcgc cagcgatcct tacaagtagt ctttgaacct agcattgtca
     1561 gcttttcagt ttgaaatatg aaattccctg attcatccat cgcatggtac tcttcacttc
     1621 caggaaataa aaaatctggt ttctttttcc cttctgtctt cgcttgcgtc tcaaatttta
     1681 aggaaaattc gtcaaatatt cttgataaat gtaactctaa agattttcct gctcttgctt
     1741 ttctgcgatt tgtaaaagaa tgtgcaaaat taatgaagct atccaaatca gtaatttttg
     1801 atttaataat ttcaaattca cgtttttcaa aaatggaaaa taattcatat tcctttgaaa
     1861 cccattgttt taacacatta ctaacgttag ttttatttaa tgcaatattt tcccttgcca
     1921 aaactgccat ttcttcagtt ttggggaagt taggaaatag tgaaaataat tttgttaggt
     1981 tatcctctac ttcttgtttt ttaggtaaat ataaacttcc tggtaaaatg ttagtttctg
     2041 cgataaatat ttcaatatct tcatctgaag ataaaacaaa agcatggaat aataaatctt
     2101 tataacaagc tctgcacaat accaataagg aaccactata tttatcactt aaaaattcaa
     2161 aattcttgcc aaaacccgta attctcgcct catttctcgt gccttggccg taatatttaa
     2221 aattgctatt agtgacgctt ccatcttgcc aattaatttt gattgaaata gttttatttg
     2281 ttcccttttg gcaaactaca tcaaagaggt cgtctgaaaa atgtttttga atataaaatc
     2341 ctgattggtg actaccagta gtaccaacat cattgggacg aatataacga cagtatactg
     2401 caattgattt atttgctgtc tgtattgctg aagctactaa gtcatcggat ttatttacta
     2461 cttgtattgt ctgagctgcc aagtcattca ttttttaact catttataat ttgtttagca
     2521 atagcttgaa ccaacggtac agcaattgaa ttgccaaact gcttgtatgc agctgtcttg
     2581 gatactgcat caataacaaa atctttagga aatcccatta aacgcgagca ctccctaggt
     2641 gtcagcttcc taggattttt tcctttctga gggatgagta tttcggaacc atctttgtaa
     2701 tatcgtgcag atagagttcg tgatattcca tctaaatcaa ctaatccaaa accaaatcca
     2761 ttaccctttg ccttatgttt tttagcgtaa ttttgaaggt aaagccataa gttatcagaa
     2821 agagtaaaag aattatctac atcatcttcc aaaatttgct ttaattttgg ttgtgattct
     2881 ggtggggagg gaaaattgaa atttatttcc ttattaaaat attgtctatc aaaacctaca
     2941 ataaaaatac gctccctatt ttgaggaaca taatattttg cattcataac ttgataaaat
     3001 atctgatagt caagctcttc taaagtccct ttaattactt taaatgtatt tcctttgtca
     3061 tgcgaaacaa ggtttttcac attctctaaa agaaaaattt taggtcgatg ttttccaata
     3121 atttcagcaa catcaaaaaa tagagttccc tgcgccttat ctaagaagcc tgtttctcgt
     3181 cctaggcttt ttttctttga aacaccagct atagagaatg gctgacacgg gaatcctgct
     3241 gttaatacat caaacttact tggaatagct gctttggttt cctttaatgt aatatctcca
     3301 taaggaatat cattaaaatt tacttggtag gtttgacggg ctttatcatc ccattcacta
     3361 gaaaatacac atcgcccacc aacattctcc attgcaatgc gaaaaccacc tattcccgca
     3421 aataaatcaa taaaagtaaa tttctcatta tttaaggtaa ctatattatc taattgattt
     3481 tgtattttat ttttcatatt ttatatttca gatgatttat taatctaaag gccatctgaa
     3541 aactccccct ttcatcaaat cttacaagcc ccgcccgcgc agccgtcatc ctgaatatcg
     3601 gtctgcgtat cgtccgcgcc gtcgcgggtg ttatggtagt acagggtttt gacgccgtat
     3661 ttgtaggcgg tcagcaggtc tttgagcatt tgtttcatag aaactttgcc gccttcgaat
     3721 ttgcccgggt cgtaggcggt attggcggaa atcgattgat cgacgaattt ttgcatcacg
     3781 ccgacaagtt tcaggtagcc ttcgttgccg ggaagctgcc acagggtttc ataggcattt
     3841 ttcagggttt caaactccgg cacgacttgt ttcaaaatgc cgtctttcga tgctttgacc
     3901 gttaccaatc cgcgcggcgg ctcgatgccg ttggtggcgt tggcgatttg agagctggtt
     3961 tcagacggca tgagcgcggt cagagtagag ttgcgcaggc cgtatttgac gatttcggca
     4021 cgcaggcttt cccaatcgta atgcaaaggc tcgccgcaga cggcatccaa atcttttttg
     4081 taggtgtcga tgggcagttt gccttgcgaa taaacggttt ggttaaagag cgtacacgca
     4141 ccgtattctt tggcaaggtt tgccgatgct ttgagcaggt aatactgtat ggcttcaaag
     4201 gtacggtggg tcagaccgag cgcggagccg tcgctgtagc ggacaccgtt tttcgccaga
     4261 taataagcat agttgatgac gccgatgccg agcgaacggc gacccatagt agaggtacgc
     4321 gcggcttcta ccggatatcc ctgataatct aaaagtgcat cgagtgcgcg cacagtcaaa
     4381 tcggcaagcc cttccaattc gtccaggctg tttaatgcgc ccaagttgaa ggcggacagg
     4441 gtacacaggg cgatttcgcc gttcggatcg ttgatattgt ccagcggttt ggtcggcagg
     4501 gcgatttcca tacacaagtt ggactgatga acaggcgcga cgcgcggatc gaacgggctg
     4561 tgcgtattgc agtgatcgac gttttgaatg tagatgcgcc cggttccggc acgctcctgc
     4621 atcagcgtgg aaaacaggtc ggcagccgga atgatgcgct tgcggatatc agggtcttgc
     4681 tcgtatttcg tatagagccg ctcaaattcg tcttggtcgg caaaaaacgc ttcgtacaat
     4741 cccggaacct cgttgggcga aaacagcgta atgttgccgc ccttaatcag gcgggtgtac
     4801 agtaggcggt tgatttgcac accgtaatca agctggcgga tacggttgtc ttccacgccc
     4861 cggttgtttt tcaacaccag caggctttcg gcttcgatat gccacaaggg gtagaacaag
     4921 gttgccgcgc cgccgcgcac gccgccttgc gaacaggatt tgaccgccgc ctgaaacatt
     4981 ttgaaaaacg ggatgcagcc ggtatgccgc gcttcgccgc cccggatttc gctgtccaaa
     5041 ccgcggatac gtccggcatt gatgccgatg cccgcacgct gggaaacgta tttcacaatc
     5101 gcgctggtag tggcattgat ggaatccaaa ctatcgtcgc attcaatcag cacacagctt
     5161 gagaactggc gcgtaggcgt acgcacgccg ctcataatcg gggtcggcag cgatacttta
     5221 aatgtggaaa cggcatcgta aaaccgtttg acgtaatcga ggcgtgtttc tttgggatat
     5281 ttgctgaaaa gacacatcgc caccagaaca tataagaact gcggtgtttc ataaatctgg
     5341 cgggtaacgc ggttctgtac cagatatttg ccttcgagct gtttgacagc ggcataggaa
     5401 aaggacatat cgcgttcgtg gtcgatatag gcgttcagct cgtcaaattc ttcgcggctg
     5461 taatcctcaa ggatatgcct gtcgtatttt gcggcatcgg taagtttttt aacgtggtcg
     5521 taaaggtgcg gcggctcgta ctcgccgtag gctattttac gcagatggaa aatcgccaaa
     5581 cgcgcggcaa ggtattggta gtccggggta tcttccgaaa ttaaatcggc agcggctttg
     5641 atgatggttt cgtggatgtc gtcggtgcgg atgccgttgt agaactggat gtgcgatttc
     5701 aactcgacct gagatacgga aacattttcc aatccgtccg ccgcccaagt gacgacacgg
     5761 tgaatcttat ccaaatcaat ggcttctaat cttccgtctc gtttggttac tttcaaatca
     5821 gtcggtgtat tcatcgcttc ctcttccact cttgatattc aagacacagt cttttcaaat
     5881 aaattaaggc agacaatata gtggattttt ggcattttct ccagtcttga caacggttgt
     5941 atttttcagt ttcaggcaat gcgcgataaa acccgcctgt cgtatttttc ctataatatt
     6001 tgttttatct gataattctt taccgataaa aaacgggtaa attttttgcc ttttgaccgg
     6061 ctccggctac aaggcggtga aataaggatt ttccgacgaa aaaggaaagc ttcctgtttt
     6121 ctgcccctgc aaattgttaa attttgcaaa gtatgatttt gccgcgccgc cgccgacaaa
     6181 ttccattttc ttaccgattg gaatttatta ttgagattaa tgtgttattt gaatctgcat
     6241 atcaaacggc aagttttgtc ggctgaatga gtctgaaact gccgacaatt tgcccgttcc
     6301 atccttccat cctatactgg aaagaatgac aaactgaaag gatcgtcatg tctgtcaaaa
     6361 agatgcttgc catactgttg tctgcaatat tgggactggt atcgacaact gccgctgccg
     6421 gtacgtcaga acccgcccac cgcgatacca aacatatccg caaggcaaac aagcagatgc
     6481 tgcaccccga atgcaggaaa tatttggaac gccgtgccgc gtggtaccga tcgcaaggca
     6541 acgtgcagga attgcgcgaa aacaaaaagg cgcgcaaagc attccgctcc ctgccttatg
     6601 cggaacagaa aatccaatgc cgggcggctt atgaggcttt cgatgatttc gacggcggca
     6661 gtttccgccg ttaatcccat ataaaatatg ccgtctgaac acaggttcag acggcatttt
     6721 ccatagatac aacaaactat ccttacgcca tttcgtttga agtcctcccg ttgccgcagc
     6781 cttaatatag tggattaaca aaaatcagga caaggcgacg aagccgcaga cagtacagat
     6841 agtacg
//
LOCUS       DAWGNT010000105         6750 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.105, whole genome shotgun sequence.
ACCESSION   DAWGNT010000105 DAWGNT010000000
VERSION     DAWGNT010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6750
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.105"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(110..469)
                     /gene="rplT"
                     /locus_tag="WHR98_001428"
     CDS             complement(110..469)
                     /gene="rplT"
                     /locus_tag="WHR98_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005795139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEZ2308101.1"
                     /translation="MPRVKRGVTARARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQ
                     YAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFD
                     KAAFAQLVEKAKAALAA"
     gene            complement(482..679)
                     /gene="rpmI"
                     /locus_tag="WHR98_001429"
     CDS             complement(482..679)
                     /gene="rpmI"
                     /locus_tag="WHR98_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012698199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEZ2308102.1"
                     /translation="MPKMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQL
                     RGTSMVNDRDLASVAKMLPYA"
     gene            complement(826..1347)
                     /gene="infC"
                     /locus_tag="WHR98_001430"
     CDS             complement(826..1347)
                     /gene="infC"
                     /locus_tag="WHR98_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEZ2308103.1"
                     /translation="MIAQEREARINGEITAKEVRLISESGEQLGVVSVREALAMAEGQ
                     DVDLVEISPTAKPPVCKLMDYGKYKYQQAKKRDEAKKNQKQVQIKEIKFRPGTDEGDY
                     QIKMRNINRFLADGDKVKVTLRFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKME
                     GRQMVMMIAPKKK"
     gene            complement(1365..3278)
                     /gene="thrS"
                     /locus_tag="WHR98_001431"
     CDS             complement(1365..3278)
                     /gene="thrS"
                     /locus_tag="WHR98_001431"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEZ2308104.1"
                     /translation="MLNITLPDGSVRQYESPVTVAQIAASIGAGLAKATVAGRVNGKL
                     VDACDPITEDSSVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIEEGF
                     YYDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTLRAEAIKIFQERGEEYKLRLI
                     DDMSEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTKLAGAYWRGDSNNEMLQRIY
                     GTAWATKDELKAYIQRIEEAEKRDHRKLGKQLDLFHLQDEAPGMVFWHPKGWALWQVI
                     EQHMRKELNAAGYKEVKTPQIMDKTFWEKSGHWENYKDNMFVTSSEKREYAVKPMNCP
                     GHVQIFNNGLRSYRDLPMRLAEFGSCHRNEPSGALHGLMRVRGFVQDDAHIFCTEDQI
                     VSEARAFNELLVRIYKQFGFHDVSVKLSLRPEQRAGSDDVWDKAEQGLRDALTACGVE
                     WEELPGEGAFYGPKIEYHVKDALGRSWQCGTLQLDFVLPERLDAEYVTENNDRARPVM
                     LHRAILGSLERFIGILIENHAGSFPLWLAPVQMVIMNITENQADYCREVAAKLQAAGF
                     RAELDLRNEKIGYKIRDNSQYRFPYQIVVGDKEKQENKVAVRRKAEDLGSLDLDDFIA
                     QLQQEITDALVNH"
     gene            complement(3331..3407)
                     /locus_tag="WHR98_001432"
     tRNA            complement(3331..3407)
                     /locus_tag="WHR98_001432"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3371..3373),aa:Val,seq:gac)
     gene            3586..4701
                     /gene="tgt"
                     /locus_tag="WHR98_001433"
     CDS             3586..4701
                     /gene="tgt"
                     /locus_tag="WHR98_001433"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEZ2308105.1"
                     /translation="MLKFTLHKKDGYARRGTLELNHGKIETPVFMPVGTYGSVKAMNP
                     QNLHDIKAQIILGNTYHLWLRPGLEVVEQFGGLHGFIGWDKPILTDSGGFQVFSLSDM
                     RKLTEEGCTFKSPINGDKLFLSPEISMKIQTVLNSDIAMQLDECTPGEATREQAKKSL
                     QMSLRWAERSKKAFEDLKNPNALFGIVQGAMYEDLREESLRGLEQFDFPGLAVGGLSV
                     GEPKPEMYRMLRAVGPILPEHKPHYLMGVGTPEDLVYGVAHGIDMFDCVMPTRNARNG
                     WLFTRFGDLKIKNAKHKLDKRPIDESCTCYACQNFSRAYLHHLHRTGEILGAQLNTIH
                     NLHFYQVIMAEMREAVEQGKFADWQAQFHENRARGTD"
     gene            4783..5793
                     /locus_tag="WHR98_001434"
     CDS             4783..5793
                     /locus_tag="WHR98_001434"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEZ2308106.1"
                     /translation="MLPFFPEPSLSYTQQNRTAVLLLNLGTPDAPTAQAVRPYLKSFL
                     TDRRVVELPKWLWYPILHGLVLTLRPKKSAHAYEKIWFKEGSPLEVYTARQAAALAKR
                     MPDLIVRHAMTYGNPSVADVLSELKAQGAGRLLVIPMYPQYAASSSGAAVDKVCEQLL
                     LQRNQMSVRTVSRFYDDTGYIDAMKNHILRYWAEHGRGKKLMLSFHGVPQKHYDLGDP
                     YPDECRHTAKLLAEALELTEDQYVVSFQSQFGRAKWVTPSTQDLFGKLPKQGVTELDV
                     FCPGFLADCLETMEEIALMGREQFYEAGGKSYRYIPCLNDNPDWIDALVALAEENLGG
                     WR"
     gene            5984..6452
                     /locus_tag="WHR98_001435"
                     /pseudo
     CDS             5984..6452
                     /locus_tag="WHR98_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692723.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
     gene            complement(6449..6739)
                     /locus_tag="WHR98_001436"
     CDS             complement(6449..6739)
                     /locus_tag="WHR98_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308107.1"
                     /translation="MSKYVTETDIGVREHFDFFGEFVVSPAARSDDLALAYGLRLEAG
                     EEGLSLAELFDKRSDSQEPVECGRIDIGGFMLTAKEVDGDGNIGSMGLKVPR"
BASE COUNT         1726 a         1812 c         1569 g         1643 t
ORIGIN      
        1 aacgcaaatt tatttaaaaa aatagacttt aaagaaagaa aatcaatcac atagaatttc
       61 tgcaaacaaa gaaaaaagga agccgcagct tccttttcaa ttttttggat taagcagcca
      121 aagcagcttt ggctttttca accaattgtg caaaagcggc tttatcgaac acggccaaat
      181 cagccaatac tttgcggtcg atttcaatag aggcgcgttt cagaccgttc ataaatttgc
      241 tgtaagacaa cccgttttca cgcgcacctg cattgatacg gacaatccac aattgacgga
      301 attggcgttt gcgttggcgg cggtcacggt atgcgtattg accggctttc attaccgcct
      361 gtttggcaac gcggtaaacg tttttacgac gaccgcgata gcctttggct aacgcgaaga
      421 ttttttggtg acgggcacgg gcggtaacac cgcgttttac gcgtggcata ttctaaactc
      481 cttaagcgta gggtaacatt ttagcaacag aagccaaatc gcgatcattt accatagagg
      541 taccgcgcag ttggcgtttg tttttggtgg tctttttagt caagatgtgg cgtttgaacg
      601 catgagcgcg tttcacaccg ccgttaccca gtactttaaa gcgttttttc gcgctagact
      661 tggttttcat tttaggcatg ggaaaactcc attcgttatc ggataaggca ttagggggtt
      721 ttaaaacatc ggtttcaaac acttgaaccc acaataccac ggttttttgc cgcaattgaa
      781 aacttactcc gaagcggcaa tcggagtaag cggagaatta tagctttatt ttttcttcgg
      841 cgcaatcatc atcaccattt ggcgaccttc cattttggga aaggactcga tttgcgccac
      901 ttcagccaaa tcttctttta cacgttccaa aagttgcgcg ccgagttgct ggtgagccat
      961 ttcacggccg cggaaacgca atgtcacttt gactttatcg ccgtcggcaa ggaagcggtt
     1021 aatgttgcgc atcttgattt gataatcgcc ctcatccgta cccggacgga atttgatttc
     1081 cttgatttgc acctgctttt ggtttttctt ggcttcgtcg cgcttcttgg cttgttggta
     1141 tttgtattta ccgtaatcca tcagtttgca tacaggcggt ttagcagttg gggaaatctc
     1201 taccaaatcg acatcctgcc cttcggccat agccaaagct tcacgaactg aaacgacacc
     1261 aagctgttcg cctgactcac tgattaaacg cacttctttg gcggtaattt cgccgttgat
     1321 tcgtgcttcg cgttcttgag cgatgatgaa tactcctata aaaattaatg attgacgagg
     1381 gcatcagtga tttcttgctg caattgcgca atgaaatcat ccaaatccaa agaacccaaa
     1441 tcttctgctt tgcggcgtac cgccactttg ttttcctgct tttctttatc gccgacaacg
     1501 atttgataag gaaaacggta ttggctgttg tcgcggattt tgtaaccgat tttttcgtta
     1561 cgcaaatcca actcggcgcg gaatcctgcc gcctgcaatt tggcagccac ttcacggcag
     1621 taatccgctt gattttcggt gatattcata atcaccattt gaaccggcgc cagccataac
     1681 gggaaagagc ctgcatggtt ctcaatcaga atgccgataa accgctccaa agaacccaaa
     1741 atggcgcggt gcaacattac agggcgagcg cggtcattgt tttcggttac atattctgca
     1801 tccaagcgtt ccggtaagac gaaatctagt tgcaatgtac cgcattgcca agaacgaccc
     1861 aaggcatctt tgacgtgata ttcgatttta ggcccgtaaa acgcaccttc gccaggcaac
     1921 tcttcccact ctacgccaca agcggtcaat gcatcacgca agccttgttc ggccttatcc
     1981 cacacgtcat ctgaacctgc acgttgttca gggcgaagag aaagcttgac ggatacatca
     2041 tggaaaccga actgtttgta gatgcgaacc aacaattcat tgaacgcacg ggcctcgctg
     2101 acgatttgat cttcggtaca gaagatatgc gcatcatctt gcacaaaacc gcgaacacgc
     2161 atcagaccat gcaatgcacc gcttggttca ttgcggtggc aagaaccgaa ttccgccaaa
     2221 cgcatcggca aatcgcgata tgagcgcaaa ccgttattaa aaatttgcac atgacccgga
     2281 cagttcatcg gtttaaccgc atattcgcgt ttttccgaac tggttacgaa catattgtct
     2341 ttatagtttt cccagtggcc ggatttttcc cagaaagttt tatccataat ctgaggcgtt
     2401 ttcacctctt tataaccggc agcattcaac tctttacgca tatgctgttc aatcacttgc
     2461 cacaaagccc agcctttagg atgccaaaac accatgcccg gtgcttcgtc ttgcaaatgg
     2521 aacagatcca attgcttgcc aagtttgcgg tggtcgcgct tttcggcttc ttcgatacgt
     2581 tgaatatagg ctttcaactc gtcttttgtc gcccaagccg taccgtagat gcgttgcagc
     2641 atttcattgt tgctgtcgcc gcgccagtat gcgcccgcca gcttggtcag tttgaagttt
     2701 ttcaggaaac gagtattcgg aacgtgcggt ccgcggcaca tatcgacata ttcctgatga
     2761 tgatacatcc ccatcgcttc cacttcggac atatcgtcaa tcaggcgcag tttgtattct
     2821 tcgccgcgct cttgaaaaat tttaatcgcc tccgcacgca gagtcatgat tttgaccaca
     2881 tcatagtctt gggcaatcaa ttctttcata cgcgcttcaa tggcggcaac atcttccggt
     2941 gtaaacggtt tttccgtggc gatgtcgtaa taaaagccct cttcaatgac ggggccgata
     3001 accatttttg cattaggata gagttgcttg acggcatgcc cgacaagatg cgcgcaggaa
     3061 tggcggatga tttcgatgcc ttcctgatct ttcggagtaa tgatttggac gcttgaatct
     3121 tcggtaatcg gatcgcacgc atcgaccaat ttgccgttta ccctgcctgc caccgtcgcc
     3181 ttcgccaaac cggcaccgat agacgcagca atttgagcca cggtaacggg ggattcgtat
     3241 tggcggactg agccgtccgg caaggtaata ttcaacatca aacgctccga aagattaaaa
     3301 aataacggca taaatgccgt tatgggaatt tggtaggcac gattggattc gaaccaacga
     3361 cccccaccat gtcaaggtgg tgctctaacc aactgagcta cgtgccttca aagaattttt
     3421 gcattttatc gggtcgtttt aatttttgca agaggtatgt gcatttcttt atgcaacatt
     3481 gtggcaagat ttggggatgt cgtctgaaaa accgtgggaa ttcatttata atgccgtctt
     3541 ttaaaacata tttcgatccc tgtcgcccaa ctgacattca atcttatgct taaatttact
     3601 ttacacaaaa aagacggata cgcccgacgc ggcacgctgg agttgaacca cggcaaaatc
     3661 gaaacgccgg tatttatgcc tgtcggtact tacggctcgg ttaaggcgat gaacccgcaa
     3721 aacctgcacg acatcaaggc gcaaattatt ttgggcaaca cttatcattt gtggctgcgt
     3781 ccgggcttgg aggtcgtcga acagtttgga gggcttcacg gctttatcgg ctgggacaaa
     3841 ccgattctga ccgactcggg cggttttcag gttttttctt tgtcggatat gcgcaagctg
     3901 acggaagaag gctgtacgtt caaaagcccg atcaacggcg acaagctgtt tttatcgcct
     3961 gaaatttcca tgaaaatcca aacggttttg aactcggaca tcgcgatgca gctggacgaa
     4021 tgcacgccgg gcgaagcaac gcgcgaacag gcgaaaaaat cgctgcaaat gagcctgcgc
     4081 tgggcggaac ggagcaaaaa agcctttgaa gatttgaaaa acccgaacgc gctgttcggc
     4141 atcgtgcaag gcgcgatgta tgaggatttg cgcgaagaat cgctgcgcgg tttggaacag
     4201 tttgattttc ccggccttgc cgtcggcggt ttgtccgtcg gcgaacccaa gcccgaaatg
     4261 taccgtatgc tgcgcgccgt cggtccgatt ctgccggaac acaagccgca ttacctgatg
     4321 ggcgtaggca cgccggaaga cctcgtgtac ggcgtggcac acggcatcga tatgttcgac
     4381 tgcgtgatgc ccacccgcaa tgcacgcaac ggctggctgt ttacccgttt cggcgatttg
     4441 aaaatcaaaa acgccaaaca caagctcgac aagcgtccga tagacgaaag ctgcacctgc
     4501 tacgcctgcc aaaacttcag ccgcgcctac ctgcaccatc tgcaccgcac cggcgaaatc
     4561 ttgggcgcac agttgaacac catccacaat ctgcatttct accaagtcat tatggcggaa
     4621 atgcgcgaag ccgtcgaaca aggcaaattt gccgactggc aggcgcaatt ccacgaaaac
     4681 cgcgcacgcg gcacagactg attccctgca atgccgtctg aagccgcttc agacggcatt
     4741 ttgccgcttt accctacccg cactattttt cagaaaccga tcatgcttcc attctttcca
     4801 gaaccctccc tttcctatac gcaacaaaac cgtaccgccg ttttgctgtt gaacctcggc
     4861 acgcccgacg cgccgaccgc gcaggcggta cgaccttatc tgaagtcctt tctgaccgac
     4921 cggcgcgtcg tcgaactgcc caaatggctg tggtatccca ttctgcatgg tctggtactg
     4981 acgctccgcc ccaaaaaaag cgcgcacgcc tatgaaaaaa tctggtttaa ggaaggttcg
     5041 cccttagaag tttacacagc acgccaagct gccgcgcttg ccaaacgtat gcccgacctc
     5101 atcgtccgcc acgccatgac ctacggcaat ccttcggtgg cagacgtatt gtcggaactg
     5161 aaggcgcaag gcgcgggcag actgctggtc atcccgatgt acccgcaata tgccgcttcc
     5221 agcagcggag cggcagtaga taaggtgtgc gaacaattac tgctgcaacg gaaccaaatg
     5281 agcgtccgca ccgtttcgcg cttttatgac gataccggct acattgatgc gatgaaaaac
     5341 cacatcctcc gatattgggc ggaacacgga cgtgggaaaa aactgatgtt gagttttcac
     5401 ggcgtaccgc agaagcacta cgacctcggc gacccctatc ccgacgagtg ccgccacacc
     5461 gccaaactgc ttgccgaagc actggaactg accgaagacc aatatgtcgt atcgttccaa
     5521 agccaattcg gcagggcaaa atgggttaca ccgagcacgc aggatttgtt cggcaaactg
     5581 cccaaacagg gggtaaccga gctggacgta ttctgcccgg gctttttggc agactgtttg
     5641 gaaaccatgg aagaaatcgc cctgatgggg cgggaacagt tttatgaagc aggcggcaaa
     5701 agctaccgct acatcccctg cctcaacgac aatcccgact ggatagacgc actcgtcgca
     5761 cttgccgaag aaaaccttgg cggctggcgt tgaaactgtt tgacccatgt ctaaaatgcc
     5821 gtctgaacgc cgtgttcaga cggcattttc ccgctacttt agcgtatgat ggcatctatg
     5881 ctggacaaca catcaagtgc aaccttacta ccgattcggc aagaaaatct ttcacccgct
     5941 acgcaaaatc aacaacaagg tttcaaacat taaggaaaca ccaatgaaca caacccgact
     6001 gccgaccgcc ctcatcttgg gctgcctctg cgccgccgct tctgccgccg acaacagcat
     6061 catgacaaaa gggcaaaaag tgtacgaatc caactgcgtc gcctgccacg gcaaaaaggg
     6121 cgaaggccgc ggaaccatgt ttccgccgct ctaccgctcc gacttcatca tgaaaaaacc
     6181 gcaggtgctg ctgcacagca tggtcaaagg catcaacggt acaatcaaag tcaacggcaa
     6241 aacctacaac ggattcatgc ccgccactgc catcagcgat gcggacattg ccgccgtcgc
     6301 cacttatatc atgaacgcct ttgacaacgg cggcggaagc gttaccgaaa aagacgtaaa
     6361 acaggcaaaa aacaaaaaaa aactaaacag acaaaatgcc gtctgaaacc ggcaatccgg
     6421 cttcagacgg cattcaaatc aaacctttct aacgcggtac tttcagcccc atagacccga
     6481 tattgccgtc cccgtcaacc tccttcgcgg tcagcataaa gccgccgatg tcaatacggc
     6541 cgcactcgac cggctcctga ctgtcggaac gcttatcgaa aagctcggca aggctcaaac
     6601 cctcttcgcc cgcttccagc ctcaaaccgt aagcaagtgc caaatcgtcc gaacgtgctg
     6661 ccggcgaaac gacaaactcg ccgaagaaat caaaatgctc acggacaccg atatccgtct
     6721 cggtaacgta tttcgacatt ttatagtgaa
//
LOCUS       DAWGNT010000106         6582 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.106, whole genome shotgun sequence.
ACCESSION   DAWGNT010000106 DAWGNT010000000
VERSION     DAWGNT010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6582
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.106"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..176)
                     /locus_tag="WHR98_001437"
     CDS             complement(<1..176)
                     /locus_tag="WHR98_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FrpC operon protein"
                     /protein_id="HEZ2308108.1"
                     /translation="MRPYATTIYQLFILFIGSVFTMTSCEPVKEQTSFNNPEPMTGFE
                     HTVTFDFQGIKMVIP"
     gene            complement(563..838)
                     /locus_tag="WHR98_001438"
     CDS             complement(563..838)
                     /locus_tag="WHR98_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEZ2308109.1"
                     /translation="MNASNWSVYLILCENSAFYCGISPNPQQRLAAHTTGKGAKYTRV
                     FKPVAMRIVAGGMDKGTALRQEIAVKKLTAAQKRQLWEQAEKMPSET"
     gene            complement(835..2118)
                     /locus_tag="WHR98_001439"
     CDS             complement(835..2118)
                     /locus_tag="WHR98_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEZ2308110.1"
                     /translation="MTVSKSGFIGQIFSRNMLVCIFTGFTSGLPLYFLINLIPAWLRS
                     EQVDLKSIGLMALIGLPFTWKFLWSPLMDAVRVPILGRRRGWMLLTQAGLLAALAAYA
                     FLNPRNHLPLIAGLSVLVAFFSASQDIVLDAFRREILSDEELGLGNSVHVNAYRIAAL
                     IPGSLSLVLADRMPWSEVFVITSLFMLPGLLMTLFLAREPVLPPSVPKTLKQTVVEPF
                     KEFFTRKGIASAVCVLLFIFLYKLGDSMATALATPFYLDMGFSKTDIGLIAKNAGLWP
                     AVAAGILGGVWMLKIGVNKALWIFGAVQAVTVLGFVWLAGFGHFDTVGTGERLMLAAV
                     IGAEAVGVGLGTAAFVSYMARETNPAFTATQLALFTSLSAVPRTVINSFAGYLIEWLG
                     YVPFFQLCFALALPGMLLLLKVAPWNGEKTQDAGR"
     gene            complement(2269..3687)
                     /gene="glnA"
                     /locus_tag="WHR98_001440"
     CDS             complement(2269..3687)
                     /gene="glnA"
                     /locus_tag="WHR98_001440"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEZ2308111.1"
                     /translation="MSIKNAVKLIEESEARFVDLRFTDTKGKQHHFTVPARIVLEDPE
                     EWFENGQAFDGSSIGGWKGIQASDMQLRPDASTAFVDPFYDDVTVVITCDVIDPADGQ
                     GYDRDPRSIARRAEAYLKSSGIGDTAYFGPEPEFFVFDGVEFETDMHKTRYEITSESG
                     AWSSGLHLDGQNTGHRPTVKGGYAPVAPIDCGQDLRSAMVNILEELGIKVEVHHSEVG
                     TGSQMEIGTRFATLVKRADQTQDMKYVIQNVAHNFGKTATFMPKPIMGDNGSGMHVHQ
                     SIWKDGQNLFAGDGYAGLSDTALYYIGGIIKHAKALNAITNPSTNSYKRLVPHFEAPT
                     KLAYSAKNRSASIRIPSVNSSKARRIEARFPDPTANPYLAFAALLMAGLDGIQNKIHP
                     GDPADKNLYDLPPEEDALVPTVCASLEEALAALKADHEFLLRGGVFSKDWIDSYIAFK
                     EEDVRRIRMAPHPLEFEMYYSL"
     gene            3771..3920
                     /locus_tag="WHR98_001441"
     CDS             3771..3920
                     /locus_tag="WHR98_001441"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308112.1"
                     /translation="MPSETRPASNFKLENIVSDGKIVNNMLLFVCSKAEYPPFCPNAD
                     KTDAV"
     gene            complement(3961..4338)
                     /locus_tag="WHR98_001442"
     CDS             complement(3961..4338)
                     /locus_tag="WHR98_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308113.1"
                     /translation="MKKMLCLAVFALGLATPAVAADWVLVDSNTATFGDADSRTDNSA
                     WFETRFAKPQKYGNGKFFNTAKTLEEMDCSGKRFRILTATWYSKSGNSIASYTPSYAE
                     WNYVIPGTLGEAQYKFVCNGYPR"
     gene            4509..5318
                     /gene="aroE"
                     /locus_tag="WHR98_001443"
     CDS             4509..5318
                     /gene="aroE"
                     /locus_tag="WHR98_001443"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEZ2308114.1"
                     /translation="MTALPRYSVFGNPVAHSKSPQIHQQFALQEGVDIEYERICADIG
                     GFAQAVSTFFETGGCGANVTVPFKQEAFHLADEHSERALAAGAVNTLIPLKNGKLRGD
                     NTDGLGLVGDIVKVQHTEIEGKNILLLGAGGAVRGVIPVLKEHRPARIVIANRTRAKA
                     EELSRLFGIEAVPMADLNGGFDIIINGTSGGLNGQIPDIPPDIFQNCALAYDMVYGCA
                     AKPFLDFARQSGAKKTADGLGMLVGQAAASYALWRGFTPDIRPVIEYMKAM"
     gene            5320..6021
                     /gene="mtgA"
                     /locus_tag="WHR98_001444"
     CDS             5320..6021
                     /gene="mtgA"
                     /locus_tag="WHR98_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HEZ2308115.1"
                     /translation="MFRIVKWLIALPVGIFIFFNAYVYGNIITYRAVAPHRTAFMSMR
                     MKQFEQEGRDVALDYRWMPYKRISTNLKKALIASEDARFAGHGGFDWGGIQNAIRRNR
                     NSGKVKAGGSTISQQLAKNLFLNESRSYIRKGEEAAITAMMEAVTDKDRIFELYLNSI
                     EWHYGVFGAEAASRYFYQIPAAKLTKQQAAKLTARVPAPLYYADHPKSKRLRNKTNIV
                     LRRMGSAELPESDTD"
     gene            complement(6346..6421)
                     /locus_tag="WHR98_001445"
     tRNA            complement(6346..6421)
                     /locus_tag="WHR98_001445"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6386..6388),aa:Phe,seq:gaa)
BASE COUNT         1680 a         1716 c         1629 g         1557 t
ORIGIN      
        1 gggataacca ttttgatgcc ctgaaaatca aatgtaaccg tatgttcaaa tcctgtcatt
       61 ggctcgggat tgttgaaact ggtttgttct ttaacaggtt cacatgaggt catagtaaaa
      121 acactcccaa taaacaaaat aaaaagttga taaatggtag tagcatatgg tctcataatt
      181 tcaagcttag aaattagtta aagaatatat tatggtagat actaactctt taagttgaca
      241 tattgtgcga tatcgagggc tgtaccgtat tttcccatcg tatcttcccc gttctttata
      301 tgagcggcag gcattctcat aaaagaaggg ataccgataa ggaaaaatac ctcggtataa
      361 aaaatatact gattgattaa tacaaatcca acaaacagtt catcgtattc ttttctgttg
      421 gcgtataaaa aatactgata tatgccttca ctttcatagg gcgacgcttt atgtaccgtc
      481 ctgtgtgttg aaacgtcggt tttccttacc gcctgccccg cttttccctg attgctgcca
      541 actgccgtcc gaacttgaac cgtcaggttt cagacggcat tttttctgcc tgctcccaca
      601 attgccgttt ttgtgcggcg gtcagttttt tgacggcgat ttcctgcctg agtgccgtgc
      661 ctttatccat cccgcctgca acgatacgca tcgccaccgg tttgaatacg cgggtatatt
      721 tcgcgccttt accggttgtg tgggcggcaa gccgctgttg cggattcggg ctgatgccgc
      781 aatagaacgc gctgttttca cacaatatca ggtaaacgct ccagtttgac gcgttcatct
      841 gcctgcatcc tgagttttct ccccgttcca aggcgcaact ttcagcagca gcagcatacc
      901 cggtagggcg agtgcgaaac acagttggaa aaacggtaca taaccgagcc attcaatcag
      961 ataaccggca aaggaattga tgaccgtgcg cgggacggcg gacaggctgg taaacagcgc
     1021 aagctgcgtt gcggtaaatg cgggattggt ttcacgcgcc atatacgata cgaacgccgc
     1081 cgtccccaaa cccacgccga ctgcctctgc gccgataact gccgccagca tcagcctctc
     1141 gcctgtgccg accgtgtcga aatgtccgaa ccctgccagc catacaaacc ccaaaacggt
     1201 tacagcctgc accgcgccaa atatccacaa ggctttgttt acgccgattt tcagcatcca
     1261 cacgccgccc aagatacctg ccgccactgc cggccacagt cctgcgtttt tggcaatcaa
     1321 accgatgtcg gtcttgctga aacccatatc cagataaaac ggcgttgcca acgcggttgc
     1381 catactgtcg ccgagtttgt aaaggaagat aaacagcagc acgcatacag ccgaagcgat
     1441 gcccttgcgt gtaaaaaatt ctttaaacgg ctctaccact gtctgcttca acgttttagg
     1501 aacggaaggc ggcaacacgg gttcgcgcgc gagaaacagc gtcatcagaa ggccgggcag
     1561 cataaataat gaagtgataa caaatacttc tgaccacggc atcctgtctg ccaacaccaa
     1621 actcaatgaa ccgggaatca gggcggcaat ccggtaggcg ttcacatgga ctgagttgcc
     1681 caaacccaat tcctcgtccg acaaaatctc gcgcctgaac gcatccaata caatatcctg
     1741 actggcggaa aaaaaagcga caagcaccga caagccggca atcaacggca gatgattccg
     1801 ggggtttaaa aaggcatagg ccgccaaagc cgccagcaac cctgcctgcg tcaacagcat
     1861 ccacccgcgc cgccggccca aaatgggaac cctgaccgcg tccatcagcg gagaccacaa
     1921 aaatttccaa gtaaacggca gaccgatcag cgccatcagc ccgatgctct tcaaatccac
     1981 ctgctcgctg cgcaaccatg ccggaatcag gttaatcaga aagtacagcg gcagccccga
     2041 ggtaaacccc gtaaaaatac agacaagcat atttcgggaa aagatttgcc cgataaaacc
     2101 tgatttcgat acagtcatgg ttcaaacagc caagaaataa aagcctattg tagcaaatat
     2161 cgcccaaccg ctgaaaaaca ccgaccctgc tccgccgttt tgccgttcaa atgcaaaatg
     2221 ccgtctgaaa ctttgttcag acgacatttc tactgaaacc tgagagtttt acaggctgta
     2281 atacatttca aattccagcg gatgcggtgc catgcggata cggcggacat cttcttcttt
     2341 gaaagcgatg tagctgtcga tccagtcttt gctgaatacg ccgccgcgca ggaggaattc
     2401 gtggtcggct ttgagggcgg cgagggcttc ttccaaagag gcgcagacgg tcggcaccaa
     2461 tgcatcttct tccggcggca gatcgtacag gtttttatcg gcagggtcgc ccggatgaat
     2521 tttgttttga ataccgtcca aaccggccat caacaaagcg gcgaacgcca agtatgggtt
     2581 ggcggtcgga tcggggaaac gcgcttcgat gcggcgtgct ttgctgctgt tcacggacgg
     2641 aatgcggatg gaagcggaac ggtttttggc ggaataagcc agtttggtcg gcgcttcaaa
     2701 gtgcggcaca aggcgtttgt aggagttggt ggacggattg gtaatcgcgt tcagggcttt
     2761 ggcgtgtttg atgatgccgc cgatgtaata aagggcggtg tcgctcaaac cggcatagcc
     2821 gtcgccggcg aacaggtttt gaccgtcttt ccagatggat tggtgaacgt gcataccgct
     2881 gccgttgtcg cccataatcg gtttgggcat gaaggtggcg gttttgccga agttgtgggc
     2941 aacgttttga atcacatatt tcatgtcttg ggtttggtcg gcgcgtttaa ccaaagtggc
     3001 gaagcgcgtg ccgatttcca tttggctgcc ggtaccgact tcgctgtggt ggacttcgac
     3061 tttgatgccg agttcttcca aaatgttcac catggcggag cgcaaatctt gaccgcagtc
     3121 aatcggggca acgggcgcgt aaccgccttt gacggtcgga cggtggccag tattttgacc
     3181 gtccaaatgc aagccgcttg accatgcgcc gctttcggaa gtgatttcgt aacgggtttt
     3241 gtgcatgtcg gtttcaaatt ctacgccgtc aaaaacgaag aattcaggct cggggccgaa
     3301 ataggcggtg tcgccgatgc cggaagattt caaataggct tcggcgcggc gggcgatgga
     3361 gcgcgggtcg cggtcgtaac cctgaccgtc ggcagggtcg atgacgtcgc aggtaatgac
     3421 gacggtaaca tcatcataaa aaggatcgac gaaggctgta gacgcatcgg gacgcagctg
     3481 catatcggaa gcctgaatgc ctttccagcc gccgatagac gaaccgtcaa acgcctgacc
     3541 gttttcgaac cactcttcgg ggtcttccaa cacgatgcgc gcaggcacgg taaagtggtg
     3601 ctgcttgcct ttggtatcgg taaagcgcaa atcgacaaag cgggcttcgc tttcttcaat
     3661 caattttacg gcgtttttaa tagacatttt tcagctcctg gaaaagggaa atagcaaaat
     3721 atgcggaacg cggcggcttg acgcaaagtc ggcatgattc taccacgtcc atgccgtctg
     3781 aaactcgccc tgcgtcaaat ttcaagctgg aaaatatagt ttcagacggc aagattgtca
     3841 acaatatgct tctgtttgtc tgttcaaaag cggaataccc gcccttttgt ccgaatgccg
     3901 acaaaacaga tgccgtctga aagcagttca gacggcatct gttgtttggt ttgaaaacgg
     3961 tcagcgagga tagccgttgc agacaaattt gtactgagcc tctccaagcg taccgggaat
     4021 aacataattc cattcggcat aggatggtgt ataagaagcg atagagtttc ccgatttgga
     4081 ataccacgtt gccgtcaata tcctaaaacg tttaccactg caatccattt cttccaacgt
     4141 tttagctgta ttaaaaaatt ttccattgcc atacttttgc ggcttggcga accttgtttc
     4201 aaaccatgca ctgttgtccg tacggctgtc tgcatcacca aacgtggcag tattactatc
     4261 taccaatacc caatccgccg ccaccgccgg cgttgccaac cccaatgcaa atactgccaa
     4321 gcacaacatc tttttcatgt ccgaccctct cgtccttgtc aacaaaataa agttaaattg
     4381 taaaaaaaaa cgactttttt caagagaaaa atattccgtc atgctatctg acaaccgttt
     4441 cagacggcat cgtttccatc tgtacgccgc cgttataaaa tagccttccc gtcttttgga
     4501 acacgaccat gaccgccctc ccccgttact ccgttttcgg caaccccgtt gcacacagta
     4561 aatcgccgca aatccatcag caatttgccc ttcaggaagg cgttgacatt gaatacgaac
     4621 gcatttgcgc cgacatcggc ggttttgcac aggcggtttc gacatttttt gaaacaggcg
     4681 gttgcggggc aaacgttacc gtaccgttca aacaggaagc gtttcatctg gcggacgagc
     4741 attccgaacg cgcattggcg gcaggtgcgg tcaatacgct gattccgttg aaaaacggca
     4801 agctgcgtgg cgacaacacc gacggtttgg gtttggtcgg cgatatagtg aaggtgcaac
     4861 acacagaaat tgaaggcaaa aatatcctat tgctcggcgc gggcggcgcg gtgcgcggcg
     4921 tgattccggt tttgaaagaa caccgtcctg cccgtatcgt cattgccaac cgtacccgcg
     4981 ccaaagccga ggaattgtcg cggcttttcg gcattgaagc cgtcccgatg gcggatttga
     5041 acggcggttt tgatatcatc atcaacggca cgtcgggcgg tctaaacggt cagattcccg
     5101 atattccgcc cgatattttt caaaactgcg cgcttgccta cgatatggtg tacggctgcg
     5161 cggcaaaacc gtttttagat tttgcacgac aatcgggtgc gaaaaaaact gccgacggac
     5221 tgggtatgct agtcggtcaa gcggcggctt cctacgccct ctggcgcgga tttacgcccg
     5281 atatccgccc tgttatcgaa tacatgaaag ccatgtaata tgttccgcat cgtcaaatgg
     5341 ctgattgccc tgcccgtcgg catctttatc tttttcaatg cctatgtgta cggcaacatc
     5401 attacctacc gcgccgtcgc gccccatcgg actgccttta tgtcgatgcg gatgaagcag
     5461 tttgaacagg aaggtcgcga tgtcgcactg gattaccgct ggatgcccta caaacgcatt
     5521 tccaccaacc tgaaaaaagc cctgattgct tccgaagatg cccgtttcgc cgggcacggc
     5581 ggcttcgatt ggggcggcat tcaaaacgcc atcaggcgca accggaacag cggcaaagtg
     5641 aaggcgggcg gctcgaccat cagccagcag cttgccaaaa acctgttttt aaacgaaagc
     5701 cgcagctata tccgcaaagg cgaagaagcg gcgattaccg cgatgatgga agccgttacc
     5761 gacaaagaca ggatttttga actgtattta aactcaatcg aatggcacta cggcgttttc
     5821 ggcgcggaag ccgcgtcccg gtatttttat caaatacccg ccgccaagct gaccaaacag
     5881 caggcggcaa aactgacggc acgcgtcccc gccccgctct actacgccga ccatccgaaa
     5941 agcaaacggc tgcgcaacaa aaccaatatc gtgctcagac gcatgggttc ggcagagttg
     6001 cctgaaagcg acacggactg attgtttcag atatggaaat gccgtctgaa ctgcggttcg
     6061 gacggcatat gttttctggt ttttatagtg gattaacaaa aatcaggaca aggcgacgaa
     6121 gccgcagaca gtacaaatag cacggaatcg attcacttgg tgcttcagca ccttagagaa
     6181 tcgttctctt tgagctaagg cgagccaacg ctgtaccggt ttaaatttaa tccactatac
     6241 ctgcccgaca gccgcaaaga ccgtatcata catagcaggc attgcggtgc gggattactg
     6301 ccgcaaacgg caggcaaaaa aaataaccgc ttcaaggcgg ttttttggtg gccagaggcg
     6361 gaatcgaacc gccgacacac ggattttcaa tccgttgctc taccaactga gctatctggc
     6421 ctttgtctgt ctcgttaaga gatgcgtatt aaaccaaatt acgggacgac atgcaagcat
     6481 atcgggcaat attctttgaa aacaggttta agtcaatgtt ttaaatttaa attaatttat
     6541 gtaaaaacaa cataaatccg tatttttgcc gcctgcccga cg
//
LOCUS       DAWGNT010000107         6568 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.107, whole genome shotgun sequence.
ACCESSION   DAWGNT010000107 DAWGNT010000000
VERSION     DAWGNT010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6568
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.107"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            320..2167
                     /locus_tag="WHR98_001446"
     CDS             320..2167
                     /locus_tag="WHR98_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor"
                     /protein_id="HEZ2308116.1"
                     /translation="MHDTRTMMIKPTALLLPALFFFPHTYAPAADLSENKAAGFALFK
                     NKSPDTESVKLKPKFPVRIDTQDSEIKDMVEEHLPLITQQQEEVLDKEQTGFLAEEAP
                     DNVKTMLRSKGYFSSKVSLTEKGGAYTVHITPGPRTKITNVGVAILGDILSDGNLAEY
                     YRNALENWQQPVGSDFDQDSWENSKTSVLGAVTRKGYPLAKLGNTRAAVNPDTATVDL
                     NVVVDSGRPIAFGDFEITGTQRYPEQIVSGLARFQPGTPYDLDLLLDFQQALEQNGHY
                     SGASVQADFDRLQGDRVPVKVSVTEVKRHKLETGIRLDSEYGLGGKIAYDYYNLFNKG
                     YIGSVVWDMDKYETTLAAGISQPRNYRGNYWTSNVSYNRSTTQNLEKRAFSGGIWYVR
                     DRAGIDARLGAEFLAEGRKIPGSDIDLGNSHATMLTASWKRQLLNNVLHPENGHYLDG
                     KIGTTLGTFLSSTALIRTSARAGYFFTPENKKLGTFIIRGQAGYTVARDNADVPSGLM
                     FRSGGASSVRGYELDSIGLAGPNGSVLPERALLTGSLEYQLPFTRTLSGAVFHDMGDA
                     AANFKRMKLKHGSGLGVRWFSPLAPFSFDIAYGHSDKKIRWHISLGTRF"
     gene            2222..6391
                     /locus_tag="WHR98_001447"
     CDS             2222..6391
                     /locus_tag="WHR98_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HEZ2308117.1"
                     /translation="MTDTAPTDTDPTENGTRKMPSEHRPTPPAKKRRPLLKLSAALLS
                     VLILAVCFLGWLAGTEAGLRFGLYQIPSWFGVNISSQNLKGTLLDGFDGDNWSIETEG
                     ADLKISRFRFAWKPSELMRRSLHITEISAGDIAIVTKPTPPKEERPPLSLPDSIDLPA
                     AVYLDRFETGKISMGKAFDKQTVYLERLDASYRYDRKGHRLDLKAADTPWSSSSGSAS
                     VGLKKPFALDTAIYTKGGLEGKTIHSTARLSGSLKDVRAELAIDGGNIRLSGKSVIHP
                     FAESLDKTLEEVLVKGFNINPAAFVPSLPDAGLNFDLTAIPSFSDGIALEGSLDLENT
                     KAGFADRNGIPVRQVLGGFVIRQDGTVHIGNTSAALLGRGGIRLSGKIDTEKDILDLN
                     IGINSVGAEDVLQTAFKGRLDGSIGIGGTTASPKISWQLGIGTARTDGSLAIASDPAN
                     GQRKLVLDTVNIAAGQGSLTAQGYLELFKDRLLKLDIRSRAFDPSRINPQLPAGNING
                     SINLAGELAKEKFTGKMRFLPGTFNGVPIAGSADIVYESRHLPRAAVDLRLGRNIIKT
                     DGGFGKKGDRLNLNITAPDLSRFGFGLAGSLNVRGHLSGDLDGGIRTFETDLSGAARN
                     LHIGKAADIRSLDFTLKGSPDTSRPIRADIKGSRLSLSGGAAVVDTADLMLDGTGVQH
                     RIRTHAAMTLDGKPFKFDLDASGGINRELTLWKGSIGILDIGGAFNLKLQNRMTLEAG
                     AERVAASAANWQAMGGSLNLQHFSWDRKTGISAKGGARGLHIAELHNFFKPPFEHNLV
                     LNGDWDVAYGRNARGYLNISRQSGDAVLPGGQALGLNAFSLKTRFQNDRIGILLDGGA
                     RFGRINADLDIGNAFGGNMANAPLGGRITASLPDLGALKPFLPAAAQNITGSLNAAAQ
                     IGGRVGSPSVNAAVNGSSNYGKINGNITVGQSNSFSTSPLGGKLNLTVADAEVFRNFL
                     PVGQTVKGSLNAAVTLGGSIADPHLGGSINGDKLYYRNQTQGIILDNGSLRSHIAGRK
                     WVIDSLKFRHEGTAELSGTVGMENSGPDVDIGAVFDKYRILSRPNRRLTVSGNTRLRY
                     SPQKGISVTGMIKTDQGLFGSQKSSMPSVGDDVVVLGEVKKEAAAPLPVNMNLTLDLN
                     DGIRFAGYGADVTIGGKLTLTAQSGGSVRGVGTVRVIKGRYKAYGQDLDITKGTVSFV
                     GPLNDPNLNIRAERRLSPVGAGVEILGSLNSPRITLTANEPMSEKDKLSWLILNRAGS
                     GSSGDNAALSAAAGALLAGQINDRIGLVDDLGFTSKRSRNAQTGELNPAEQVLTVGKQ
                     LTGKLYIGYEYSISSAEQSVKLIYRLTRAIQAVARIGSRSSGGELTYTIRFDRFSGSD
                     KKDSAGNSKGK"
BASE COUNT         1554 a         2108 c         1726 g         1180 t
ORIGIN      
        1 aaggttgcgt tgatttgccc tatgcagtgc cggacaggct ttgctttatc attcggcgtg
       61 atggtttaat ttattgaacg aaaataaatt tatttaatcc tgcctatttt ccggcactat
      121 tccgaaacgc agcctgtttt ccatatgcgg attggaaaca aaatacctta aaacaagcag
      181 atacatttcc ggcgggccgc aacctccgaa ataccggcgg cagtatgccg tctgaagtgt
      241 cccgccccgt ccgaacaaca caaaaacagc cgttcgaaac cctgtccgaa cagtgttaga
      301 atcgaaatct gccacaccga tgcacgacac ccgtaccatg atgatcaaac cgaccgccct
      361 gctcctgccg gctttatttt tctttccgca cacatacgcg cctgccgccg acctttccga
      421 aaacaaggcg gcgggtttcg cattgttcaa aaacaaaagc cccgacaccg aatcagtcaa
      481 attaaaaccc aaattccccg tccgcatcga cacgcaggac agtgaaatca aagatatggt
      541 cgaagaacac ctgccgctca tcacgcagca gcaggaagaa gtattggaca aggaacagac
      601 aggcttcctc gccgaagaag caccggacaa cgttaaaacg atgctccgca gcaaaggtta
      661 tttcagcagc aaagtcagcc tgacggaaaa aggcggggct tatacggtgc acatcacacc
      721 ggggccgcgc accaaaatca ccaacgtcgg cgtcgccatc ctcggcgaca tcctttcaga
      781 cggcaacctc gccgaatact accgcaacgc gctggaaaac tggcagcagc cggtaggcag
      841 tgatttcgat caggacagtt gggaaaacag caaaacttcc gtcctcggcg cggtaacgcg
      901 caaaggctac ccgcttgcca agctcggcaa cacccgggcg gccgtcaacc ccgataccgc
      961 caccgtcgat ttgaacgtcg tcgtggacag cggccgcccc atcgccttcg gcgactttga
     1021 aatcaccggc acacagcgtt accccgaaca aatcgtctcc ggcctggcgc gcttccaacc
     1081 gggcacgccc tacgacctcg acctgctgct cgacttccaa caggcactcg aacaaaacgg
     1141 gcattattcc ggcgcgtccg tacaagccga cttcgaccgt ctccaaggcg accgcgtccc
     1201 cgtcaaagtc agcgtaaccg aggtcaaacg ccacaagctc gaaaccggca tccgcctcga
     1261 ttcggaatac ggtttgggcg gcaaaatcgc ctacgactat tacaacctct tcaacaaagg
     1321 ctatatcggc tcggtcgtct gggatatgga caaatacgaa accacgcttg ccgccggcat
     1381 cagccagccg cgcaactatc ggggcaacta ctggacaagc aacgtttcct acaaccgttc
     1441 gaccacccaa aacctcgaaa aacgcgcctt ctccggcggc atctggtatg tgcgcgaccg
     1501 cgcgggcatc gatgccaggc tgggggcaga gtttctcgca gaaggccgga aaatccccgg
     1561 ctcggatatc gatttgggca acagccacgc cacgatgctg accgcctctt ggaaacgcca
     1621 gctgctcaac aacgtgctgc atcccgaaaa cggccattac ctcgacggca aaatcggtac
     1681 gactttgggc acattcctgt cctccaccgc gctgatccgc acctctgccc gtgcaggtta
     1741 tttcttcacg cccgaaaaca aaaaactcgg cacgttcatc atacgcggac aagcgggtta
     1801 caccgttgcc cgcgacaatg ccgacgttcc ttcagggctg atgttccgca gcggcggcgc
     1861 gtcttccgtg cgcggttacg aactcgacag catcggactt gccggcccga acggatcggt
     1921 cctgcccgaa cgcgccctct tgacgggcag cctggaatac caactgccgt ttacgcgtac
     1981 cctttccggc gcggtattcc acgatatggg cgacgccgcc gccaatttca aacgtatgaa
     2041 gctgaaacac ggttcgggac tgggcgtgcg ctggttcagc ccgctcgcgc cgttttcctt
     2101 cgacatcgcc tacgggcaca gcgacaagaa aatccgctgg cacatcagct tgggaacacg
     2161 cttctaaacc gatacggccg cttcagacgg cattgcagca aaccattttg aaacagacat
     2221 tatgaccgat accgcaccga cagataccga tccgaccgaa aacggcacgc gcaaaatgcc
     2281 gtctgaacac cgccccaccc cgccggcaaa aaaacgccgc ccgctgctga agctgtcggc
     2341 ggcactgctg tctgtcctga ttttggcagt atgtttcctc ggctggctcg ccggcacgga
     2401 agcgggtttg cgcttcgggc tgtaccaaat cccgtcttgg ttcggcgtaa acatttcctc
     2461 ccaaaacctc aaaggcacgc tgctcgacgg cttcgacggc gacaactggt cgatagaaac
     2521 cgagggggca gaccttaaaa tcagccgctt ccgcttcgcg tggaaaccgt ccgaactgat
     2581 gcgccgcagc ctgcacatta ccgaaatttc cgccggcgac atcgccatcg ttaccaaacc
     2641 gactccgcct aaagaagaac gccctccgct cagccttccc gacagcatag acctgcctgc
     2701 cgccgtctat ctcgaccgct tcgagacggg caaaatcagc atgggcaaag cctttgacaa
     2761 acaaaccgtc tatctcgaac ggctggatgc ttcataccgt tacgaccgca aaggacaccg
     2821 cctcgacctg aaggccgccg acacgccgtg gagcagttcg tcggggtcag cctcggtcgg
     2881 cttgaaaaaa ccgtttgccc tcgataccgc catttacacc aaaggcggac tcgaaggcaa
     2941 aaccatacac agtacggcgc ggctgagcgg cagcctgaag gatgtgcgcg ccgaactggc
     3001 gatcgacggc ggcaatatcc gcctctcggg aaaatccgtc atccacccgt ttgccgaatc
     3061 attggataaa acattggaag aagtgctggt caaagggttc aacatcaacc cggccgcctt
     3121 cgtgccctcc ctgcccgatg ccgggctgaa tttcgacctg accgccatcc cgtcgttttc
     3181 agacggcatc gcgctggaag gttcgctcga tttggaaaac accaaagccg gctttgccga
     3241 ccgcaacggt atccccgtcc gtcaggtttt aggcggcttt gtcatccggc aggacggcac
     3301 ggtgcatatc ggcaatacgt ccgccgccct gctcggacgg ggcggcatca ggctgtcggg
     3361 caaaatcgac accgaaaaag acatcctcga tttaaatata ggcatcaact ccgtcggcgc
     3421 ggaagacgta ctgcaaaccg cgttcaaagg caggttggac ggcagcatcg gcatcggtgg
     3481 cacgaccgcc tcgcccaaaa tctcttggca actcggcatc ggcacggcgc gcacggacgg
     3541 cagcctcgcc attgcaagcg accccgcaaa cggacagcgg aaactggtgc tcgacaccgt
     3601 caacatcgcc gccgggcaag gcagcctgac cgcgcaaggc tatctcgagc tgtttaaaga
     3661 ccgcctgctc aagctggaca tccgttcccg cgcattcgac ccttcgcgca tcaatccgca
     3721 acttccggca ggcaatatca acggctcaat aaaccttgcc ggcgaactgg caaaagagaa
     3781 attcacaggc aaaatgcggt ttttacccgg cacgttcaac ggcgtaccga ttgccggcag
     3841 tgccgacatt gtttacgagt cccgccacct tccgcgtgcc gccgtcgatt tgcggctggg
     3901 gcggaacatt attaaaacag acggcggctt cggcaaaaaa ggcgaccggc tcaacctcaa
     3961 catcaccgca cccgatttat cccgtttcgg tttcggactc gcggggtctt taaatgtacg
     4021 cggacacctt tccggcgatt tggacggcgg catccgaacc tttgaaaccg acctttccgg
     4081 cgcggcgcgc aacctgcaca tcggcaaggc ggcagacatc cgttcgctcg atttcacgct
     4141 caaaggttcg cccgacacaa gccgcccgat acgcgccgac atcaaaggca gccgcctttc
     4201 gctgtcgggc ggagcggcgg ttgtcgatac cgccgacctg atgctggacg gcacgggcgt
     4261 gcagcaccgc atccgcacac acgccgccat gacgctggat ggcaaaccgt tcaaattcga
     4321 tttggacgct tcaggcggca tcaacaggga acttacccta tggaagggca gcatcggcat
     4381 tctcgacatc ggcggcgcat tcaacctaaa actgcaaaac cgtatgacgc tcgaagccgg
     4441 tgcggaacgt gtggcggcaa gtgcggcaaa ttggcaggct atgggcggca gcctcaacct
     4501 gcaacacttt tcctgggaca ggaaaaccgg catatcggca aaaggcggcg cacgaggtct
     4561 gcatatcgcc gagttgcaca atttcttcaa accgcccttc gaacacaatc tggttttaaa
     4621 cggcgactgg gatgtcgcct acgggcgcaa cgcgcgcggc tacctcaata tcagccggca
     4681 aagcggcgat gccgtattgc ccggcgggca ggctttgggt ttgaacgcat tttccctgaa
     4741 aacgcgcttt caaaacgacc gtatcggaat cctgcttgac ggcggcgcgc gtttcgggcg
     4801 gattaacgcc gatttggaca tcggcaacgc cttcggcggc aatatggcaa atgcaccgct
     4861 cggcggcagg attaccgcct cccttcccga cttgggcgca ttgaagccct ttctgcccgc
     4921 cgccgcgcaa aacattaccg gcagcctgaa tgccgccgcg caaatcggcg gacgggtcgg
     4981 ctctccgtcc gtcaatgccg ccgtcaacgg cagcagcaac tacgggaaaa tcaacggcaa
     5041 catcaccgtc gggcaaagta attctttcag tacctcgccc ctgggcggga aactcaacct
     5101 gaccgttgcc gatgccgaag tattccgcaa cttcctgccc gtcggacaaa ccgtcaaagg
     5161 cagcctgaat gccgccgtaa ccctcggcgg cagcatcgcc gacccgcact tgggcggcag
     5221 catcaacggc gacaagctct attaccgcaa ccaaacccaa ggcatcatct tggacaacgg
     5281 ttcgctgcgt tcgcatatcg caggcaggaa atgggtaatc gacagcctga aattccggca
     5341 cgaagggacg gcggaactct ccggtacggt cggtatggaa aacagcggac ccgatgtcga
     5401 tatcggcgcg gtgttcgaca aataccgcat cctgtcccgc cccaaccgcc gcctgacggt
     5461 ttccggcaac acccgcctgc gctattcgcc gcaaaaaggc atatccgtta ccgggatgat
     5521 taaaacggat caggggctgt tcggttcgca aaaatcctcg atgccgtccg tcggcgacga
     5581 tgtcgtcgta ttaggcgaag tcaaaaaaga ggcggcggca ccgctccccg tcaatatgaa
     5641 cctgacttta gacctcaatg acggcatccg cttcgccggc tacggcgcgg acgttaccat
     5701 aggcggcaaa ctgaccctga ccgcccaatc gggcggaagc gtgcggggcg tgggcacggt
     5761 ccgcgtcatc aaagggcgtt ataaggcata cgggcaggat ttggacatta ccaaaggcac
     5821 ggtctccttt gtcggcccgc tcaacgaccc caacctcaac atccgcgccg aacgccgcct
     5881 ttcccccgtc ggtgcgggcg tggaaatatt gggcagcctc aacagtccgc gcattacgct
     5941 gacggcaaac gaaccgatga gtgaaaaaga caagctctcc tggctcatcc tcaaccgcgc
     6001 cggcagtggc agcagcggcg acaatgccgc cctgtccgca gccgccggcg cgctgcttgc
     6061 cgggcaaatc aacgaccgca tcgggctggt ggatgatttg ggctttacca gcaagcgcag
     6121 ccgcaacgcg caaaccggcg aactcaaccc cgccgaacag gtgctgaccg tcggcaaaca
     6181 actgaccggc aaactctaca tcggctacga atacagcatc tccagcgcgg aacagtccgt
     6241 caaactgatt taccggctga cccgcgccat acaggcggtt gcccgtatcg gcagccgttc
     6301 gtcgggcggc gagctgacat acaccatacg tttcgaccgc ttctccggtt cggacaaaaa
     6361 agactccgcc ggaaacagca aaggaaaata agcggttttc agacggcgcg ccgccaaacc
     6421 ggacatttga aaacctgctt ttccaccgtc cgccgccgcc gtccgcctgc aagggaacag
     6481 aatcgatata gtgaattaac aaaaatcagg ataaggcgac gaagccgcag acagtacaaa
     6541 tagtacggaa ccgattcact cggtgctt
//
LOCUS       DAWGNT010000108         6513 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.108, whole genome shotgun sequence.
ACCESSION   DAWGNT010000108 DAWGNT010000000
VERSION     DAWGNT010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6513
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.108"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(110..1465)
                     /locus_tag="WHR98_001448"
     CDS             complement(110..1465)
                     /locus_tag="WHR98_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEZ2308118.1"
                     /translation="MSDFFHSDVLSVSELNAFAKSILENHLAGLWIAGEVSNLTRAAS
                     GHYYFSLKDSRAQVRCAMFKGAAARLAKPLKEGDHIEVSGKISIYEARGEFQITVNEV
                     RLKGLGQLYEAYERLKAQLQAEGAFAAERKKPLPARPQCIGIVTSLAAAALRDVVTTL
                     KRRAPEIPVIVYPTAVQGAGSEFQIAQAIKTASQRAECDVLIVCRGGGSIEDLWAFNE
                     EPVVRAIEACTVPVVSGVGHETDFTLADFVADVRAPTPTGAAELVSPNRQESLHRLAQ
                     AQGRLKTVLEQRYFDASQKLDWLARQIRHPRQKLDEQRTYIHKLAQTLSYSMTQNLRA
                     HAARFERQTQALQHYRPDISVYRQDIDRFQTTLSHAFHQLLTHRRQSLTAQAALLEAV
                     SPQHILERGFSVVKNTRGQVIRNADVLKQGQKLHITFADGETDVRVSKEQGQQDLFDC
                     I"
     gene            1662..2483
                     /gene="nadE"
                     /locus_tag="WHR98_001449"
     CDS             1662..2483
                     /gene="nadE"
                     /locus_tag="WHR98_001449"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HEZ2308119.1"
                     /translation="MMRIFSTGGKMDTQAVITHIVRWLDEYAARANAKGFVVGVSGGI
                     DSAVVSALAARTGRTTLLLDMPIRQHPDQLERARLHIRNLQRQYANVSAQTVDLTDTF
                     QTFEQTVGVHQTAFDNQPLSLANARSRLRMLTLYYYGQIHGLLVTGTGNKIEDFGVGF
                     FTKYGDGGVDISPIADLTKTQVYRLAEALGVDEAIQKAPPTDGLWDTERTDEEQMGAS
                     YPELEWAMGVYGTRKPEDFEGRQREVLEIYTRLHRAMQHKINPIPVCRIPPELLG"
     gene            complement(2553..3026)
                     /locus_tag="WHR98_001450"
     CDS             complement(2553..3026)
                     /locus_tag="WHR98_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEZ2308120.1"
                     /translation="MTDFSVWETAPFGATVDHILQRYHNVHRAQFEELVPLAQKVAQV
                     HADTFPAEIAGLLAYMQNELLMHMMKEERMLFPMINQGVGRGAAMPIGVMMHEHEEHD
                     RAIARLKELTDNFQPPEGACGSWTRLYALAKEMVEDLNDHIHLENDILFARVLDS"
     gene            3324..3656
                     /gene="trxA"
                     /locus_tag="WHR98_001451"
     CDS             3324..3656
                     /gene="trxA"
                     /locus_tag="WHR98_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HEZ2308121.1"
                     /translation="MSSELIVHTGDAAFEQDVLKSDLPVLLDFWAPWCGPCKMIAPIL
                     DDIAAEFEGRLKVVKINIDDNEATPSRFGVRGIPTLMVFKNGEVVATKVGALAKGQLT
                     TFVEASIA"
     gene            complement(3709..4656)
                     /locus_tag="WHR98_001452"
     CDS             complement(3709..4656)
                     /locus_tag="WHR98_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEZ2308122.1"
                     /translation="MTDITPFANRLGKNIKHLMKWAKRNGIEAWRIYDRDIPQFPFAV
                     DVYGDQIHLQEYDTGWLMQPEEYEAWLAEVLEAVAFVTGFAPEQIRLKRRERQKGLQQ
                     YEKTGKAGEDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETAAGKRFLNLFSY
                     TGSFTVYAATGGAASSETVDLSNTYLDWARRNFELNGIDTERHKIVRADVFQYLQTAY
                     GEGRQFDLIVMDPPSFSNSKKMSDILDIQRDHKKLIDGAVKLLASDGILYFSNNLRSF
                     VLDDLVSEQYAVKDISKQSVPEDFRNKKIHRCWEIRHKS"
     gene            4984..6372
                     /locus_tag="WHR98_001453"
     CDS             4984..6372
                     /locus_tag="WHR98_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEZ2308123.1"
                     /translation="MSIKFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIM
                     ASAQTGSGKTAAFLLPTLQKLTKRSEKPGKGPRALVLTPTRELAAQVEKNALAYAKNM
                     RWFRTVSIVGGASFGYQTRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEAD
                     RMLDMGFIDDIETIVEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQG
                     KIEEQLLYCDDMRHKNRLLDHILRDADIDQCVIFTSTKAMTEVIADELYEKGFAANCL
                     HGDMPQGWRNRTLMDLRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRI
                     GRTGRAGRTGIAITFAEVNEYVKVHKIEKYIGRKLPELTIEGMEPTRKRKPAGGKPKG
                     KGGWGDRKAGGQRGDHKPGKEGFGGKTRGEGFKKEGFKKDGFKKTGEGFKGKRKAGDS
                     FAGKSERRYKDR"
BASE COUNT         1548 a         1770 c         1723 g         1472 t
ORIGIN      
        1 cggttttttg aatttcagtc atttctgata aaccccggcg gctttccgct tccggactcc
       61 cgcttttgcg ggaatgacgg cggaggggga gcggtttttc cgattgggtt taaatgcaat
      121 cgaacaaatc ctgctgccct tgttctttgc ttacgcgcac gtcggtttcg ccgtcggcga
      181 aggtaatgtg cagcttctgc ccctgcttca aaacatcggc gttgcggatg acttgtccgc
      241 gtgtgttttt gacgacggaa aagccgcgct ccagaatgtg ctgcggcgaa acggcttcga
      301 gcaatgctgc ttgggcggtc aggctttggc ggcggtgggt aagcagttgg tggaaggcgt
      361 gcgacaaggt cgtctgaaag cggtcgatgt cttgccggta aacggaaata tcaggacggt
      421 aatgttgcag ggcttgggtt tggcgttcga aacgggcggc gtgggcgcgg aggttttgcg
      481 tcatcgagta agacagcgtt tgcgccagtt tgtggatgta ggtgcgctgt tcgtcgagtt
      541 tttggcgcgg atgacggatt tgccgcgcca gccagtcgag tttttggctg gcatcgaaat
      601 agcgttgttc caaaacagtt ttcagacggc cttgcgcttg ggctagacga tgtaacgatt
      661 cttggcggtt gggactgacc agctccgccg cgccggtcgg cgtgggcgcg cgcacgtcgg
      721 cgacaaaatc ggcaagcgtg aaatcggttt cgtgacctac gccgctgacg acgggaaccg
      781 tgcaggcttc gattgcgcgt acgaccggtt cttcgttaaa cgcccacaag tcttcaatgc
      841 tgccgccgcc gcgacagaca atcaacacgt cgcattcggc gcgttgcgat gcggttttaa
      901 tcgcttgggc aatctgaaac tcgctgcccg cgccctgaac ggcagtcgga taaacgatga
      961 cgggaatttc gggcgcgcgg cgtttcaagg tggttacaac atcgcgcaat gccgccgccg
     1021 ccaaactggt tacgatgccg atacattgcg gtcgggcagg cagaggtttt ttgcgttccg
     1081 ccgcaaacgc gccttccgcc tgcaactgcg ccttcaaccg ctcataggct tcgtaaagct
     1141 gccccaaacc tttgagccgt acttcgttta cggtaatttg aaattcgccc cgcgcctcgt
     1201 aaatactgat tttccctgat acttcgatat ggtcgccttc tttcaaaggc ttcgccaaac
     1261 gcgccgccgc acctttgaac atcgcgcaac gcacctgcgc gcggctgtct ttaagcgaga
     1321 agtaataatg tccgctggcg gcgcgggtca ggttggacac ttcgccggca atccacaaac
     1381 cggcaaggtg gttttccaaa atacttttgg caaatgcatt caactcggaa acggacaaca
     1441 cgtcagaatg aaaaaaatca gacatcgaat caatcaaata ataaaaaata tgaatatgtt
     1501 ttgaagccca aggcggcatc gggccgccta aattgtcaac aatattataa cacgcgccat
     1561 cttgccgccc gccttttccc gtatgacttt tttaagcggg gaatgggaaa aatattcatc
     1621 aacctgcctg caatctattc aaattgcacc gccggcaggc tatgatgcgg atattttcga
     1681 caggaggaaa aatggatacg caggcagtta tcacacatat tgtccgatgg ttggacgaat
     1741 acgccgcccg ggcaaatgca aaagggtttg tcgtgggcgt ttccggcggc atcgattccg
     1801 ccgtcgtctc cgcactcgcc gcccgcaccg gccgcaccac gctgcttctg gatatgccga
     1861 tacgccaaca ccccgaccag cttgagcggg caaggctgca catccgcaat ctgcaacggc
     1921 aatatgccaa tgtaagcgca caaacggtcg atctgaccga caccttccag acctttgaac
     1981 aaaccgtcgg cgttcatcag acggcatttg acaatcagcc gctttccctc gccaacgcca
     2041 gaagccgcct gcgtatgctg accctgtact actacgggca gatacacgga ctactggtta
     2101 cggggacagg taacaaaatt gaagatttcg gtgtaggatt ttttaccaaa tacggcgacg
     2161 gcggcgtgga catcagcccg attgccgacc tgaccaaaac ccaggtttac cggcttgccg
     2221 aagcattggg cgtggacgag gcgattcaaa aagccccgcc gaccgacggc ctgtgggata
     2281 cggaacgcac cgacgaggaa cagatgggcg cgagctatcc cgaactggag tgggcaatgg
     2341 gcgtgtacgg cacgcgcaaa cccgaagatt ttgaagggcg gcagcgcgaa gttctggaaa
     2401 tctatacgcg gctgcaccgc gcgatgcagc acaaaatcaa cccgattccc gtgtgccgca
     2461 ttccgcccga attgttgggc tgaaacgtgg aaatgccgtc tgaaacggaa aaccgtattt
     2521 cagacggcat ggaaatatcc gactcctatc ccttaagaat cgagtacgcg ggcaaacaaa
     2581 atatcgtttt ccaaatgaat gtggtcgttc aaatcctcca ccatttcttt cgccagcgcg
     2641 taaagccgcg tccagcttcc gcaagcccct tctggcggtt ggaaattgtc ggtcagctct
     2701 ttgagccgtg cgatggcgcg gtcgtgttct tcatgttcgt gcatcatcac gccgatgggc
     2761 atcgccgcac cgcgtccgac accctgatta atcatcggaa acagcatccg ctcctccttc
     2821 atcatatgca tcagcagttc gttctgcata taggcaagca gcccggcaat ttctgccgga
     2881 aaggtatcgg catggacttg ggccactttc tgcgccagcg gcaccaattc ttcaaattgt
     2941 gcgcggtgga cattgtggta gcgttgcagg atatgatcga cggttgcacc aaagggggcg
     3001 gtctcccaaa cggaaaaatc agtcatcgca gtgttccttt tacagggttt cgggtttggt
     3061 tttgaacatt catactttaa gaatcaattc aaacggagca tacaccgccc gcgcgcttct
     3121 gtacagcctc aaacgtattc cttacatttt gataataaaa gtaattttca gaaataaaat
     3181 actgtccgaa ccgtttttta gaatttgcaa aggcgattgg ggcggtacag aaaaactatt
     3241 atcccgcccg cccacttgaa atttttatgc ccaagcccta tcctgcacgc tatcgtgcca
     3301 atcccaaccg aaaaggaaaa ataatgagca gcgaattaat cgtacacacc ggcgatgccg
     3361 ctttcgagca agatgttttg aaatccgacc tccccgtcct gctggacttt tgggctccgt
     3421 ggtgcggccc ctgcaaaatg attgccccga ttttggacga catcgccgcc gaatttgaag
     3481 gccgtctgaa agtagtcaaa atcaacatcg acgacaacga agccaccccg tcccgtttcg
     3541 gcgtgcgcgg cattccgacc ctgatggtgt ttaaaaacgg cgaagtcgtc gccaccaaag
     3601 tcggcgcatt ggcaaaaggc cagctaacca cctttgtcga agcctctatc gcctgataaa
     3661 gcgcaatcga aaaagccgcc ggaagattcc ggcggctttt tcgcaccctt aagatttgtg
     3721 gcggatttcc cagcacctat ggattttttt gttgcggaaa tcttcgggaa cggattgttt
     3781 ggaaatgtct ttgacggcgt attgttccga taccaagtcg tctaagacga agctgcgcag
     3841 gttgttggaa aagtacaaaa tgccgtctga agcgagcagc ttcaccgcgc cgtcaatcag
     3901 ctttttgtga tcgcgctgaa tgtcgaggat gtcggacatt ttcttgctgt tggaaaaact
     3961 gggcggatcc atcacaatga ggtcgaactg cctgccttcc ccatatgccg tctgaagata
     4021 ttggaacacg tcggcgcgga cgattttgtg ccgttccgta tcgatgccgt tcaattcaaa
     4081 attgcgtctc gcccaatcga gataagtgtt cgacaaatcg acagtttcgc tggatgccgc
     4141 gccgccggtg gcggcataga cggtgaagct gccagtgtag gaaaacaggt ttaaaaaacg
     4201 tttgcccgcc gccgtttcgc cgactttttt gcgcgtgttt cgatgatcca aaaaaagccc
     4261 cgtatccaaa tacttatcaa ggttaaccca aaacttgcgg ccgttttcgg tgatgacgaa
     4321 atcttcgccc gccttgccgg ttttctcgta ctgctgcaaa cctttttggc gttcgcggcg
     4381 tttgaggcgg atttgttcgg gcgcaaaacc ggtaacgaag gcgacggctt ccaagacttc
     4441 ggcaagccac gcttcgtatt cttcgggctg catcagccag ccggtatcgt attcctgaag
     4501 gtggatttgg tcgccgtaaa catcgacggc gaaggggaat tgtgggatgt cgcggtcgta
     4561 aatgcgccag gcttcgatgc cgttgcgttt cgcccatttc ataaggtgtt tgatgttttt
     4621 gcccaagcgg ttggcaaacg gtgtgatgtc ggtcattggt ttcaggcgga ataaagtgga
     4681 aaacggcaat tttactgtaa ttaacgcccg attgcttgac cgtttcgggc aaaccctata
     4741 ccatccaccg cttatcttgt catacgaagc catcgccttc caacctaaac cgcccttacg
     4801 ggcgcgtttc ttctgttgct ttgattttac aaagcgtatc tgtgcaggtt gccgtcgatg
     4861 taaaccacaa gcaagccgct tgcgacaacc ctgtaacttc acattccccg tatcgttacc
     4921 cttccctgct tcaggccgtc tgaacctttc ggacgcgggc gttgttgtct tccaaggata
     4981 gccatgtcta ttaaatttgc cgatttgaac ctcgataaaa acatcttgtc cgccgtcagc
     5041 agcgagggtt acgaaagccc gaccccgatt caggcgcagg cgattccgtc cgccttggaa
     5101 ggtcgcgaca ttatggcttc ggcgcaaacc ggctccggca aaaccgccgc ctttctgtta
     5161 ccgactttgc aaaaactgac caaacgcagc gaaaaaccgg gcaaaggccc gcgtgctttg
     5221 gtgttgaccc cgacccgcga actggcggct caagtcgaga aaaacgcgct ggcgtatgcc
     5281 aaaaatatgc gttggttccg caccgtcagc atcgtcggcg gcgcgtcttt cggctaccaa
     5341 acccgtgccc tgagcaaacc ggtcgatctg attgtcgcca cgccgggccg tctgatggac
     5401 ctgatgcaaa gcggcaaagt tgattttgaa cgtttggaag tgctgatttt ggacgaagcc
     5461 gaccgtatgt tggatatggg ctttatcgac gacatcgaaa ccatcgtgga agcaacgccg
     5521 agcgaccgtc agactttgtt gttctccgcc acttgggacg gcgcggtcgg caaactggcg
     5581 cgcaaactga ccaaagaccc tgaaatcatc gaagtcgaac gcgtggacga tcaaggcaaa
     5641 atcgaagaac aactgctgta ctgcgacgat atgcgtcaca aaaaccgcct gctcgaccac
     5701 atcctgcgcg atgccgacat cgaccaatgc gtgattttca cgtccaccaa agcgatgacc
     5761 gaagtcatcg cggatgaatt gtacgaaaaa ggtttcgccg ccaactgcct gcacggcgac
     5821 atgccgcaag gctggcgcaa ccgcacgctg atggatttgc gcaaaggccg ctgcaaaatt
     5881 ttggttgcca ccgacgttgc cgcacgcggt atcgacgtac cgaccattac ccacgttatc
     5941 aactacgacc tgccgaaaca ggcggaagac tacgttcacc gcatcggccg taccggtcgg
     6001 gcaggacgca cgggtattgc gattactttt gccgaagtga acgaatacgt caaagtccac
     6061 aaaatcgaaa aatacatcgg ccgcaaactg cccgaactga ccatcgaagg catggaaccg
     6121 acacgcaaac gcaaaccggc cggcggcaaa ccgaaaggca aaggcggctg gggcgatcgt
     6181 aaagccggcg gccagcgcgg cgatcataaa ccgggcaaag aaggcttcgg cggcaaaacg
     6241 cgcggcgaag gtttcaagaa agaaggcttt aagaaagacg gtttcaaaaa aaccggcgaa
     6301 ggcttcaaag gcaaacgcaa agccggcgat tcttttgcag gcaaaagcga acgccgttac
     6361 aaagaccgct aagccccaac ctgcctcata aaccaatgcc gtctgaaacc gatttcgagt
     6421 ttcagacggc atttttgcaa tgtttcaaca ccgcccggct ttgataccca aaggattaat
     6481 ctgcaatata gtggattaac aaaaaccagt acc
//
LOCUS       DAWGNT010000109         6504 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.109, whole genome shotgun sequence.
ACCESSION   DAWGNT010000109 DAWGNT010000000
VERSION     DAWGNT010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6504
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.109"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(12..1118)
                     /gene="serC"
                     /locus_tag="WHR98_001454"
     CDS             complement(12..1118)
                     /gene="serC"
                     /locus_tag="WHR98_001454"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEZ2308124.1"
                     /translation="MSLYPIYNFSAGPAVLPEAVLETARQEMLDYNGTGFPVMAMSHR
                     SEMFLSILHHAEQDLRQLLKVPDNYKILFLQGGATTQFNMAAMNLAHGFRTADAVVTG
                     NWSRIAYEQMSRLTDTEIRLAAHGGEQFDYLDLPPVETWDVAPDSAFVHFAVNETVNG
                     LQYREVPRLSEGMPPLVCDMSSEILSREFDVADYGLIYAGAQKNIGPAGVTVVIVRED
                     LLERCPNDIPDVFNYRSHLNREGMYNTPSTYAIYMSGLVFRWLQTQGGVKKIEAVNRL
                     KAQTLYETIDGSGGFYINRIRPNARSKMNVVFQTGDEELDRRFVLEAELQGLCLLKGY
                     KSVGGMRASIYNAMPLEGVRALADFMRDFQRRYG"
     gene            1483..1914
                     /gene="rimP"
                     /locus_tag="WHR98_001455"
     CDS             1483..1914
                     /gene="rimP"
                     /locus_tag="WHR98_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003685973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEZ2308125.1"
                     /translation="MDIQTILEKTLPGLGYELVDFELTAQGTLRVFIDKESGITVEDC
                     ATVSNHLSRVFMVEDIDYKNLEISSPGLDRPLKKAADFVRFAGQNAKIKTRLPIDGQK
                     NFIGKIEGCENDTVTVSFDGKTVQIELGNIDKARLRPEFKF"
     gene            1942..3444
                     /gene="nusA"
                     /locus_tag="WHR98_001456"
     CDS             1942..3444
                     /gene="nusA"
                     /locus_tag="WHR98_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEZ2308126.1"
                     /translation="MSREMLQLAEALASEKNVDAEVVFQALEFALSTAAKKKADREHM
                     DVRVQINRDTGEYQTFRRWLIVADEDYTYPDVEKTIEEIQEEIPGTTIQIGEYYEEQL
                     PNEGFGRQAAQTAKQIILQRIRDAEREQNLNEFLAVKEDIVSGTVKRVERHGIIVEVV
                     AGKLDALIPRDQMIPRENFRSGDRIRALFLRVEEIGNTGRKQVILSRTSGDFLVKLYA
                     NEVPEIADGMLEIRAVARDPGQRAKVAVKANDQRIDPQGTCIGVRGSRVNAVSNELSG
                     ERIDVVLWSPEPAQFVMSALSPAEVSRIVIDEDKHAVDVIVAEDQLALAIGRGGQNVR
                     LASDLTGWQLNIMTSAEADERNAAEDAAIRRLFMDYLNVDEETADVLVQEGFATLEEV
                     AYVPAAELLAIEGFDEEIVDMLRNRARDAILTMAIAAEEKLGEVSDDMRNLEGIDADM
                     LRSLAEAGITTRDDLAELAVDELIEITGVNEETAKAVILTAREHWFTEDK"
     gene            3456..6344
                     /gene="infB"
                     /locus_tag="WHR98_001457"
     CDS             3456..6344
                     /gene="infB"
                     /locus_tag="WHR98_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEZ2308127.1"
                     /translation="MSNTTVEQFAAELKRPVEDLLKQLKEAGVSKNSGSDSLTLDDKQ
                     LLNAYLTKKNGSNGGTISIRRTKTEVSTVDGVKVETRKRGRTVNIPSAEELAAQVKAA
                     QTQAAPVRPEQTAEDAAKARAEAAARAEARAKAEAEAAKLKAAKAGNKAKPAAQKPTE
                     AKAETAPVAAETKPAEESKAEKAQADKMPSKKPAEPKEKAAKPKHERNGKGKDAKKPA
                     KPAAPAVPQPVVSAEEQAQRDEEARRAAALRAHQEALLKEKQERQARREAMKQQAEQQ
                     AKTAQEAKTGRQRPAKPAEKPQAAAPAVENKPVNPAKAKKEDRRNRDDEGQGRNAKGK
                     GGKGGRDRNNARNGDDERVRGSKKGKKLKLEPNQHAFQAPTEPVVHEVLVPETITVAD
                     LAHKMAVKGVEVVKALMKMGMMVTINQSIDQDTALIVVEELGHIGKPAAADDPEAFLD
                     EGAEAVEAEALPRPPVVTVMGHVDHGKTSLLDYIRRTKVVQGEAGGITQHIGAYHVET
                     PRGVITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTIEAIAHAKAAGVPM
                     VVAVNKIDKEAANPERIRQELTAHEVVPDEWGGDVQFIDVSAKKGLNIDALLEAVLLE
                     AEVLELTAPVDAPAKGIIVEARLDKGRGAVATLLVQSGTLKKGDMLLAGTAFGKIRAM
                     VDENGKSITEAGPSIPVEILGLSDVPNAGEDAMVLADEKKAREIALFRQGKYRDVRLA
                     KQQAAKLENMFNNMGETQAQSLSVIIKADVQGSYEALAGSLKKLSTDEVKVNVLHSGV
                     GGITESDVNLAIASGAFIIGFNVRADASSRKLAENENVEIRYYNIIYDAIDDVKAAMS
                     GMLSPEEKEQVTGTVEIRQVISVSKVGNIAGCMVTDGVVKRDSHVRLIRNNVVIHTGE
                     LASLKRYKDDVKEVRMGFECGLMLKGYNEIMEGDQLECFDIVEVARSL"
BASE COUNT         1798 a         1933 c         1635 g         1138 t
ORIGIN      
        1 gcatttgaaa atcaaccgta acgccgttgg aaatcacgca taaaatctgc caaagcccgc
       61 acgccttcaa gcggcatcgc attataaatg ctggcgcgca tcccaccgac agacttatag
      121 cccttcaaca ggcacaagcc ctgcaattcg gcttccagca caaaacggcg gtcaagctcc
      181 tcatcccccg tttggaacac gacattcatt ttagaacgcg cattcggacg gatacggttg
      241 atatagaaac cgccgctgcc gtctatcgtc tcatacaagg tttgcgcctt cagccgattg
      301 accgcttcaa tttttttcac accgccctgc gtctgcagcc agcggaacac cagccccgac
      361 atataaatcg cgtaagttga cggcgtgttg tacatacctt cgcggttcaa atgcgaacgg
      421 tagttgaaca catcgggaat atcgttcgga caacgctcga gcaaatcctc acgcacaatc
      481 accaccgtaa ctcctgccgg cccgatgttt ttctgtgcgc ctgcgtaaat cagtccgtag
      541 tcggcaacat caaactcgcg cgacaaaatc tcgctggaca tatcgcacac cagcggcggc
      601 atgccttctg aaaggcgcgg cacttcacgg tattgcagcc cgttgaccgt ttcattgacg
      661 gcaaaatgga caaacgccga atcgggtgca acatcccacg tttccacagg cggcaggtcg
      721 agatagtcga actgctcgcc gccatgcgcc gccaaacgga tttccgtatc ggtcaaacgg
      781 ctcatctgtt cataagcgat acggctccag ttgcccgtta ccaccgcgtc ggcagtgcgg
      841 aaaccgtgtg ccagattcat ggctgccata ttaaattggg ttgttgctcc gccctgcaga
      901 aacaatatct tatagttgtc aggcactttc aaaagctgcc tcaaatcctg ttccgcatga
      961 tgcaggatgc tcaaaaacat ttccgaacgg tggctcatcg ccatcacagg aaaacccgta
     1021 ccgttgtagt ccaacatttc ctgccgcgcc gtttccaaca cggcttcggg caatacggca
     1081 gggccggcgg aaaaattgta aatcggataa agagacatga tgcagccttg attctgaaca
     1141 ataacccgcc cgattttagg cttgcagcag gctttgtgca aggatggaaa atacctgtcc
     1201 tccgcccgac tccatgccgc ccgaacacag aaaacaacat caatatattg atttacaaac
     1261 ataaaaatca tgcacgcgac aaatagatac atttgttttg tcaacaatat tcacgatttc
     1321 ccattacaaa cctcccttac acccgctttt ttccgtccca aaaacacaaa ataaatcaac
     1381 actttcattt ctccgcaaaa gcggttataa tcacgccgat ttttcaactt tgacgaaaaa
     1441 tggccacggg gccatttttt tattatgtac atagggagca gcatggatat ccaaaccatc
     1501 ctcgaaaaaa ccctgcccgg cctgggctac gaactggtcg atttcgaact gaccgcgcaa
     1561 ggaacattgc gcgtgttcat cgacaaagaa agcggcatta ccgtcgaaga ctgcgcaacc
     1621 gtcagcaacc acttgagccg cgtcttcatg gttgaagaca tcgactacaa aaacctggaa
     1681 atttccagcc ccggactcga ccgccccttg aaaaaagccg ccgacttcgt gcgctttgcc
     1741 ggtcagaatg ccaaaatcaa aacccgcctg ccgatagacg gtcagaaaaa ctttatcggt
     1801 aaaatcgaag gctgcgaaaa cgataccgtt accgtatcct tcgacggcaa aaccgtacaa
     1861 atcgaattgg gcaacatcga caaagcccgt ctgcgccccg aattcaaatt ctaaaacaca
     1921 acaatattgg agatgttcaa aatgagtcgt gaaatgttac agctggcaga agcactggca
     1981 agcgaaaaaa acgttgatgc ggaagtcgtc ttccaagcac tggaattcgc cctgtctacc
     2041 gccgccaaga aaaaggcaga ccgcgaacac atggacgtgc gcgtccaaat caaccgcgac
     2101 accggcgaat accaaacctt ccgccgctgg ctgattgtcg ccgatgaaga ctatacctat
     2161 cccgatgtcg aaaaaaccat cgaggaaatc caagaggaaa ttcccggcac taccatccaa
     2221 atcggcgaat actacgaaga gcagctgccc aacgaaggct tcggccgcca agccgcgcaa
     2281 accgccaaac aaatcatcct gcaacgcatc cgcgatgccg agcgcgagca gaatctgaac
     2341 gagtttctcg ccgtcaaaga agacatcgtg tccggcacgg tcaaacgcgt cgaacgccac
     2401 ggcatcatcg tcgaagtcgt tgccggcaaa ctggacgcgc tgattccgcg cgaccaaatg
     2461 attccgcgcg aaaacttccg cagcggcgac cgcatccgcg ccctcttcct gcgcgtcgaa
     2521 gaaatcggca acaccggccg caaacaagtc atcctgagcc gtacttccgg cgatttcctc
     2581 gtcaaactgt acgccaatga agtacctgaa attgcagacg gcatgcttga aatccgtgct
     2641 gtcgcccgcg acccgggcca gcgtgccaaa gtcgccgtca aagccaacga ccagcgcatc
     2701 gatccgcaag gcacctgtat cggcgttcgc ggttcgcgtg tcaatgccgt cagcaatgaa
     2761 ttgtccggcg agcgcatcga cgttgtcctt tggtcgcccg agcctgccca attcgtcatg
     2821 agcgcgctct cacccgccga agtcagccgc atcgtcatcg acgaagacaa acacgccgtc
     2881 gatgtcatcg ttgccgaaga ccagctcgcg ctcgccatcg gacgcggcgg tcaaaacgtg
     2941 cgccttgctt ccgacctgac cggctggcag ctcaacatca tgacctctgc agaagcagac
     3001 gagcgcaatg cggcagaaga tgccgccatc cgccgcctgt ttatggatta cttgaacgtg
     3061 gacgaagaaa ccgccgacgt actggttcag gaaggttttg caaccttgga agaagtcgcc
     3121 tatgttcctg ccgccgaact gcttgccatt gaaggatttg acgaagaaat cgtcgatatg
     3181 ctccgcaacc gcgcccgcga tgccatcctg accatggcga ttgccgccga agaaaaactg
     3241 ggcgaagtgt ccgacgatat gcgcaacctc gaaggcatag atgccgatat gctccgcagc
     3301 cttgccgaag caggcattac cacccgcgac gacttggcag agcttgctgt ggacgaactg
     3361 attgaaatca ccggtgtaaa cgaagaaacc gcaaaagccg tcatcctgac cgcacgcgaa
     3421 cactggttta ccgaagacaa ataaaggggg tacagatgag taacacaacc gtagaacaat
     3481 ttgccgccga gctgaaacgc cccgtcgaag acctgttgaa acagttgaaa gaagccggcg
     3541 tcagcaaaaa cagcggcagc gattccctga cgctggacga caaacagctt ctgaacgcct
     3601 acctgaccaa gaaaaacggc agcaacggcg gcaccatcag catccgccgc accaaaaccg
     3661 aagtcagcac cgttgacggc gtaaaagtcg aaacacgcaa acgcggacgc actgtcaaca
     3721 ttccttctgc cgaagaattg gcagcacagg taaaagccgc ccaaacccaa gccgcacctg
     3781 tccggccgga gcagacggca gaagacgcgg caaaagcccg agccgaagct gccgcacgtg
     3841 cagaagcccg tgccaaggca gaagcggaag cggcaaaact gaaagcggca aaagcaggca
     3901 acaaagccaa acctgccgcg cagaaaccca ccgaagcaaa agccgaaacc gcacctgttg
     3961 cggcggaaac caaacccgcc gaagaaagca aagcggaaaa agcccaagcc gacaaaatgc
     4021 cgtctaaaaa acccgccgag cccaaagaaa aagccgccaa gccgaaacac gagcgaaacg
     4081 gcaaaggcaa agatgccaaa aaaccggcga aacctgccgc acctgccgtg ccgcaacccg
     4141 tggtcagcgc agaagaacag gcgcaacgcg atgaagaagc acgccgtgcc gccgcacttc
     4201 gcgcccacca ggaagccctg ttgaaagaga aacaggaacg ccaggcacgc cgcgaagcca
     4261 tgaaacaaca ggcagaacaa caggcaaaaa ccgcacagga agccaaaacc ggcagacagc
     4321 gtcccgccaa acctgccgag aaaccgcagg cagccgcgcc ggccgtcgaa aacaagcctg
     4381 tcaatccggc aaaagcgaaa aaagaagacc gccgcaaccg cgatgacgaa ggtcaaggcc
     4441 gcaacgccaa aggcaaaggc ggaaaaggcg ggcgcgaccg caacaatgca cgcaacggcg
     4501 acgacgagcg cgtacgcggc agcaaaaaag gcaaaaaact caaactcgag ccgaatcaac
     4561 acgccttcca agcaccgacc gaacccgtcg ttcatgaagt tttggttccc gaaaccatta
     4621 ccgttgccga tttggcgcac aaaatggcgg tcaaaggcgt ggaagtggtc aaagccctga
     4681 tgaagatggg catgatggtt accatcaacc aatccatcga ccaagacacc gccctgattg
     4741 tggtggaaga actcggccac atcggcaaac ctgccgcagc cgacgaccct gaagcattct
     4801 tggacgaggg cgcggaagca gtggaagccg aagcattgcc gcgtccgccc gtcgttaccg
     4861 tgatgggcca cgtcgaccac ggcaaaacct cgctgctgga ctacatccgc cgtaccaaag
     4921 tggtacaggg cgaagcgggc ggcattacgc agcacatcgg cgcgtaccac gttgaaaccc
     4981 ctcgcggcgt gattaccttc ttggacaccc cgggccacga agcctttacc gctatgcgcg
     5041 cacgcggtgc gaaagcaacc gacatcgtga ttcttgtggt cgccgccgac gacggcgtga
     5101 tgccgcaaac catcgaagcg attgcccacg ccaaagcggc aggcgtaccg atggtggttg
     5161 ccgtcaacaa aatcgataaa gaagccgcca acccagagcg tatccgccaa gagctgaccg
     5221 cacacgaagt cgtgcctgac gaatggggcg gcgatgtaca gtttatcgac gtttccgcta
     5281 aaaaaggcct gaacatcgat gcattgctcg aggcagtctt gctcgaagcc gaagttttgg
     5341 aactgaccgc acctgtcgat gcgcccgcca aaggcatcat cgtcgaggcg cgcttggaca
     5401 aaggccgcgg cgcggttgcc acattgctgg ttcaaagcgg cacgctgaaa aaaggcgata
     5461 tgctgctggc cggtacggca ttcggcaaaa tccgcgcgat ggtcgatgaa aacggcaaat
     5521 ccattaccga agccggtccg tccatccccg tcgaaatcct cggcttgtcc gacgtaccga
     5581 atgcgggtga agacgcgatg gtattggcgg acgagaaaaa agcgcgcgaa atcgccctct
     5641 tccgccaagg caaataccgc gacgtgcgcc ttgccaaaca gcaggcggcg aagctggaaa
     5701 atatgttcaa caatatgggc gaaacccagg cccaatcttt gtcggtcatc atcaaggcag
     5761 acgtgcaggg ctcttacgag gctttggcgg gcagcctgaa aaaactgtcc acagacgaag
     5821 tgaaagtgaa cgtgttgcac agcggcgtgg gcggcattac cgaatcggat gtcaaccttg
     5881 ccatcgcttc gggcgcattc attatcggct ttaacgtgcg tgcagatgcc tcttcgcgca
     5941 aacttgccga aaatgaaaac gtggaaatcc gctactacaa catcatctac gatgccatcg
     6001 acgacgtgaa ggcggcgatg agcggtatgc tttccccgga agagaaagaa caggttaccg
     6061 gtacggtcga aatccgtcag gtcatctccg tttccaaagt cggcaacatt gcaggctgta
     6121 tggttaccga cggcgtggtc aaacgcgatt cccatgtccg cctcatccgc aacaacgtgg
     6181 ttatccacac gggcgaactg gcttcgttga aacgctacaa agacgatgta aaagaagtcc
     6241 gcatgggctt cgagtgcggt ctgatgctca aaggctacaa cgaaatcatg gaaggcgacc
     6301 aactggaatg cttcgacatc gtcgaagttg cccgcagcct gtaattcctt tgcaaataaa
     6361 atgccgtctg aagcgttcag acggcaacga aacgggttct gtatcataca gaacccgttt
     6421 tttgtcgcaa atcggcttca gacagccctc ttgccttatc ccgatttgaa tctgacttgc
     6481 catacaaaca ggcttcagac ggca
//
LOCUS       DAWGNT010000110         6453 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.110, whole genome shotgun sequence.
ACCESSION   DAWGNT010000110 DAWGNT010000000
VERSION     DAWGNT010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6453
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.110"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(39..1073)
                     /gene="purM"
                     /locus_tag="WHR98_001458"
     CDS             complement(39..1073)
                     /gene="purM"
                     /locus_tag="WHR98_001458"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEZ2308128.1"
                     /translation="MSTSLSYRDAGVDIDAGDQLVENIKPFAKRTMRPEVLGDLGGFG
                     ALVEIGKKYKNPVLVSGTDGVGTKLKLAFDWDKHDTVGIDLVAMSVNDILVQGAEPLF
                     FLDYFACGELDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVG
                     VVEKENVITGRSIGAGDVVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLRE
                     AVIAPTRLYVKPILAALEKFTIKGMAHITGGGITENVPRVLPENTVAQIDAKSWELPK
                     LFQWLQKVGNVETQEMYRTFNCGIGMVVIVAAEDADAVQDLLGEQGETVYRLGLIRER
                     QGDEHQTQVA"
     gene            complement(1593..1677)
                     /locus_tag="WHR98_001459"
     tRNA            complement(1593..1677)
                     /locus_tag="WHR98_001459"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1641..1643),aa:Leu,seq:tag)
     gene            1827..2501
                     /locus_tag="WHR98_001460"
     CDS             1827..2501
                     /locus_tag="WHR98_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308129.1"
                     /translation="MPAALIKDFLLTQGLKLPLDEVRAAYLTAQTVMGMGTASIDRSV
                     LWRSDEGWKLADYLSCDNVREDALKRLFMALDSVFSRSTGVRSAAVYALMPSENQAFQ
                     LICLSQQGEGLENIWNLDENVADVSLACRCAQSGWMNVASDVRRWLDLGELSGERNHA
                     SAAQISIPICTESGGVLGVVHVEFECAECAGTAAQAEWVALALALSEPLKQLLGITAA
                     EGDENV"
     gene            2494..3087
                     /gene="ribA"
                     /locus_tag="WHR98_001461"
     CDS             2494..3087
                     /gene="ribA"
                     /locus_tag="WHR98_001461"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEZ2308130.1"
                     /translation="MSELLNYVASCRLPTEWGVFTMHGFEEANGQEHVALTVGDFSDG
                     NPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLRQEGRGIGLINK
                     IRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLK
                     DAGINVVERIPLHVGENLENKRYLQTKADKLGHLMSE"
     gene            3243..4256
                     /locus_tag="WHR98_001462"
     CDS             3243..4256
                     /locus_tag="WHR98_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEZ2308131.1"
                     /translation="MIFSIIVPIYNVEKYLRCCVDSVLAENFTDYEMILVDDGSPDGC
                     GKICDEYAGKYPHIKVIHQENGGLSDARNAGIRAAKGDYLIFLDSDDYWADTNRSKNA
                     RGGVLFDLQQLADKKVDLILHPSSLNYHVIPKGADFSDNDFVRHFETLVEGRYYIANA
                     WTKIVRREIIIKNNLFFPKGYIHEDFPYSLQLARFIKTFAFYDNPFYQYRVLGNSISH
                     NIKYKNFSDMLTHLDRGVDFLVENKNSPIYGGLQKFVFDNIGYLRSISVRLYFSKNII
                     VVYREYFSFKEKCRKIFGAKAIRPVFIGKTAFIIGLPILRLLVPPMLYPAIKAVYQKF
                     FSE"
     gene            4471..5808
                     /gene="ribB"
                     /locus_tag="WHR98_001463"
     CDS             4471..5808
                     /gene="ribB"
                     /locus_tag="WHR98_001463"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEZ2308132.1"
                     /translation="MTDTAGLRRRNLRQWIAEHYGGLQTRFAEAVALNTGELSALLKN
                     KSFGEKKARKIEQAAKMPAFWLDTEHTARPPEHTGKHTMSHISPIPEILADIKAGKMV
                     IITDAEDRENEGDLLMAAQFVTPEAINFMIKHARGLVCLPMDGEMVEKLGLPMMTQKN
                     GAQYGTNFTVSIEAAHGITTGISAADRALTIQTAVSPTAKPEDIVQPGHIFPLRAQKG
                     GVLVRAGHTEAGVDLAQMNGLIPASVICEIINDDGTMARMPELMKFAEEHKLKIGTIA
                     DLIEYRSRTESLLEDMGNAPVQTPWGEFQQHVYVDKLSGETHLALVKGTPSADTETLV
                     RVHEPFSVMDFIQANPRHSWSLPKALEHIQQAESGVVILLHRTEDGASLLDRTLPKGA
                     NQAYKWDSKSYGIGAQILAGLNVKKLRVLGQPSSFTGLTGFGLEVVGFEEAEK"
     gene            complement(5968..6105)
                     /locus_tag="WHR98_001464"
     CDS             complement(5968..6105)
                     /locus_tag="WHR98_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HEZ2308133.1"
                     /translation="MKPVKLKMPSESLSDGILFGLENTYAVLSLKERIQKTKATGIYR
                     K"
     gene            complement(6116..6346)
                     /locus_tag="WHR98_001465"
     CDS             complement(6116..6346)
                     /locus_tag="WHR98_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HEZ2308134.1"
                     /translation="MEDFSVVIGYDEIKAKNHSLSAGQYFEVKIDYVDISADEFAQKM
                     AGFSADLDKLFAESAELEKEIKDRLAMLKFNS"
BASE COUNT         1610 a         1696 c         1550 g         1597 t
ORIGIN      
        1 aaacccatgt ttgagacggc atttcgctat agaagcaatc aggcaacctg ggtttgatgc
       61 tcgtctccct gacgctcacg gatcaaacct aaacggtaaa ctgtttcacc ttgttcaccc
      121 aagagatcct gaaccgcatc ggcatcttcg gcagcaacaa taacgaccat gccgatgccg
      181 cagttaaagg ttcggtacat ttcttgggtt tccacattgc ccaccttttg aagccattgg
      241 aagagcttgg gcaattccca cgatttagca tcgatttgtg caaccgtgtt ttcaggcaac
      301 acgcgcggca cgttttcggt aatgccgccg ccggtaatgt gtgccatacc tttaatggta
      361 aatttttcca aagcggcaag aatcggtttc acatacagac gggtcggcgc aataacagcc
      421 tcacgcaagg ttttgccatt atcaaactcg gcatccaaat cgggattgtc gcgttcgatg
      481 attttacgga taagggaata gccgtttgaa tgtgcgccgt tggaagccaa acccaatacc
      541 acatcgcccg cgccgatgct gcggccggta atgacattct ctttttccac tacgccgacg
      601 gcaaaacccg ccaaatcgta ttctccgacg ggatacatac ccggcatttc ggcagtttcc
      661 ccgccaatca gggcgcagcc ggattcttcg caaccttgtg caatgccttt gatgacatcg
      721 gttgcgcgcg gaacatccaa ttcgccgcag gcgaaataat ccaagaaaaa cagaggttct
      781 gctccttgaa ccaaaatatc gttgacactc attgcaacaa ggtcgatgcc caccgtatcg
      841 tgtttatccc aatcaaaggc aagtttgagc ttggtaccca cgccgtccgt accgctgacc
      901 aatacgggat ttttatattt cttgccgatt tcgaccaatg cgccaaaacc gcccaaatcc
      961 cccaatactt ccggacgcat ggtgcgtttg gcaaacggtt tgatgttttc gaccagttgg
     1021 tcgcctgcgt cgatatcgac acctgcatcg cggtaactca atgaagtact catcgttttt
     1081 ccttggtaaa tggggattgg acggtaaaat aacggggcgt attctacctt atttcacgtt
     1141 tgcaggttca gatttttaga caatattgta aacagtccgc catatacccg cgcgtgtcgg
     1201 gtttggcggg accgtccgca ggattaacgg gcagaaaccc gcctgccctt cccctcaatt
     1261 ccttatatat cgcgttccat caaaagacgc attgcttttc ttaaccattc cttttggcag
     1321 acgagcggaa ggggtttttt gatgccatca tcaaaatcaa tattttcttc tttccggttg
     1381 aaaccccggc attaggggcg gtgaatctga ttgcgggcgg aagcacccgt ttccgattcg
     1441 gtgcggaaca aatggcggca ctttatgtac cgttctgcgt gttgaaacat ataggcagat
     1501 aaaaaagccg cccgctgaaa agcagacgac ttatgttttg tggcactaat ttgtcccgat
     1561 aagcattaac tatataattt atttatcatt attggtgcgg acggagagac tcgaactctc
     1621 acacctctcg gcgccagaac ctaaatctgg tgcgtctacc aatttcgcca cgtccgcatg
     1681 ggaattggac gattatacag attttgtttt tttgtgcaag gttttgggcg taatagttga
     1741 ggcttatgct ttgcagcggt aaaatccgct attcgtccgc ccggcatcgg aatccggcgg
     1801 ttttatttta ttgacggaat ttgagtatgc ctgctgcttt gattaaggat tttctgctga
     1861 ctcagggttt gaagctgccg cttgacgagg ttcgggcggc gtatctgacg gcgcagacgg
     1921 taatgggtat ggggacggct tcgatagacc gttcggtttt gtggcgcagt gatgagggtt
     1981 ggaaacttgc cgattacctg tcgtgcgaca atgtccgcga agatgcactg aaacggcttt
     2041 tcatggcttt ggattcggtg ttttcgcgct cgacaggcgt gcggagtgcg gcggtctatg
     2101 ccttgatgcc gtctgaaaac caggctttcc aactgatatg cctgtcccaa cagggagaag
     2161 gtttggaaaa catatggaat ctagatgaaa atgttgccga tgtttcactt gcctgccgtt
     2221 gcgcgcaaag cggctggatg aatgttgcct cggatgtacg ccgttggttg gatttggggg
     2281 agctttcggg agaacgcaat catgcttcgg cggcgcaaat ttccattcca atctgcacgg
     2341 aaagtggcgg tgtgttgggc gtggttcatg tggaatttga atgcgcagag tgtgcgggta
     2401 cggcagcgca ggcggaatgg gtggctcttg ccttggcttt gtccgaacct ttgaagcagc
     2461 ttttgggcat cactgccgca gaaggagatg aaaatgtctg aattattaaa ctatgttgct
     2521 tcctgccgcc tgccgaccga atggggcgta tttacgatgc acggctttga agaggcaaac
     2581 gggcaggaac acgtcgcgct gaccgtcggt gatttttcag acggcaatcc ggttctgacg
     2641 cgcatccact ccgaatgcct gacgggcgat gcgctgttct cgagaaaatg cgactgcgga
     2701 cctcaacttg aagcggccat gagggcggta cagacagagg ggcgcggcat catcgtctat
     2761 ctgcgtcagg aaggacgcgg catcgggctg attaacaaaa tccgcgccta tcatctgcaa
     2821 gaccaaggta tggatacggt tgaagccaat ttggcactcg ggctgcccgt cgatgcccgc
     2881 gatttccgtt tggcgcaatc tatctacgaa tatctgggca tccgctcggt caaactgctg
     2941 accaacaacc ccgaaaaaat ccaaaccctg aaagatgcgg ggattaacgt ggtcgaacgc
     3001 atccccctgc acgtcgggga aaaccttgaa aacaaacgct acctccaaac caaagcagac
     3061 aagctgggac atctgatgtc ggaataaggc aaagttgcag ggaacgggca tcctgcgccg
     3121 cctttcggga aacaggtttc cataccttga taaagcaata agttttatag tggatgcaaa
     3181 cgcattgcgg gtgcgggttt gaggcatacg cgcaaacatc ttaatataat ggattgatat
     3241 ttatgatttt ctccatcatc gtccctattt acaatgtgga aaaatatctc cgctgctgcg
     3301 tggattccgt gcttgccgaa aattttaccg attatgaaat gattttggtc gatgacggtt
     3361 cgccggacgg ctgcgggaag atttgcgacg aatatgcagg caaatatccg catataaaag
     3421 tgattcatca agaaaacggc gggctgtcgg atgcccgcaa cgccggtatc cgggcggcaa
     3481 aaggcgatta cctaatcttt ttggacagcg acgactattg ggccgacacc aatcgttcaa
     3541 aaaacgcgcg ggggggggtt ctctttgatt tacaacaact tgcagacaaa aaggttgatt
     3601 tgatcctgca tccctcgtcc ctcaattacc acgtcatccc caaaggggcg gacttttcgg
     3661 ataatgattt tgtccgccat tttgaaacgc tggtggaggg gcggtactat atcgccaacg
     3721 cgtggacaaa gattgtcagg cgggaaataa tcatcaaaaa caatctgttt ttcccaaaag
     3781 gatacattca cgaggatttc ccgtacagtt tgcaattggc gcgttttatc aagacttttg
     3841 ccttttacga taaccctttt taccagtacc gcgttctcgg caactctatc agccacaaca
     3901 tcaaatacaa aaatttcagc gatatgctga cgcatctcga ccggggcgtg gattttttag
     3961 tcgaaaacaa aaattccccc atctacggcg gtttgcaaaa atttgtcttc gacaatatcg
     4021 gctatctgag atctatatcg gtaaggcttt atttttccaa aaacattatc gttgtctacc
     4081 gagaatattt ttcatttaaa gagaaatgca gaaagatatt cggcgcgaag gcaatccgtc
     4141 cggtttttat cgggaagacc gcattcatca taggattgcc gatattgcgc ctgctcgtac
     4201 cgcctatgct gtacccggca atcaaggccg tttatcaaaa atttttttcg gaataagctt
     4261 ccggcaaacc ccgaatcgga agcgggcggg aagaaacagc cgccccgccg gcggggttgc
     4321 ggcaatgccg tctgaagcca cgaatccggc ttcagacggc atctgtttac caaaaagcaa
     4381 ataattcggt ttggcaaaaa aaacagattt gctttttggt aaatacgcgc ttacaatccg
     4441 ctacatccga tttctacaaa ggatgaaacg atgaccgaca cagccggtct gcgccgccgc
     4501 aacctgcggc aatggatagc agaacactac ggcggtttgc aaacccgttt tgccgaagcc
     4561 gttgccctca acacaggcga actctccgcc cttttgaaaa acaaatcctt cggcgagaaa
     4621 aaagcccgta aaatcgaaca ggcggcaaaa atgcccgcct tctggctcga taccgaacac
     4681 accgcccgcc cgcccgaaca cacaggaaaa cacaccatgt cccatatttc ccccatcccc
     4741 gaaatcctag ccgacatcaa agccggcaaa atggtcatca tcaccgatgc cgaagaccga
     4801 gaaaacgaag gcgacctgct gatggcggcg caattcgtca cgcccgaagc catcaacttc
     4861 atgatcaaac acgcgcgcgg cttggtctgc ctgccgatgg acggcgaaat ggtcgaaaaa
     4921 ctcgggctgc cgatgatgac ccaaaaaaac ggcgcgcaat acggcaccaa ctttaccgtc
     4981 tccatcgaag ccgcacacgg cattaccacc ggcatttccg ccgccgaccg cgccctgact
     5041 attcaaaccg ccgtttcccc gaccgctaaa cccgaagaca tcgtccaacc cggtcatatc
     5101 tttccgcttc gcgcccaaaa aggcggcgta ctcgtccgcg ccggacacac cgaagccggc
     5161 gtcgacctgg cgcaaatgaa cgggctgatt cctgcctccg ttatttgcga aatcatcaac
     5221 gacgacggca cgatggcgcg tatgcccgaa ctgatgaaat tcgccgaaga acacaagctc
     5281 aaaatcggca cgattgccga cctcatcgaa taccgcagcc gtaccgaaag cctgcttgaa
     5341 gacatgggca atgcgcctgt acaaaccccg tggggcgagt tccaacaaca cgtttacgtc
     5401 gacaaactct ccggcgaaac ccacctcgcc ctcgtcaaag gcacgccctc cgccgacacc
     5461 gaaaccctcg tccgcgtcca cgaacccttc agtgtgatgg acttcattca agccaacccg
     5521 cgccattcat ggtcgctgcc caaagccctt gagcacatcc aacaagccga aagcggcgtc
     5581 gtcatcctct tacaccgcac cgaagacggc gcatccctgc tcgaccgaac cctacccaaa
     5641 ggcgcaaacc aagcctacaa atgggacagc aaaagctacg gcatcggcgc acaaatcctc
     5701 gccggcctca acgtcaaaaa actgcgcgtc ctcgggcagc cctcatcttt caccggcctg
     5761 accggcttcg gtttggaagt cgtcggcttt gaagaagcgg aaaaataata tagtaaattc
     5821 aaatacttta tatttgcttt atttattgca ttatttccgt gcaaacgaaa acccggtctg
     5881 ttgggttaga ttttgttttt tcaaatttcg ggtaacttct aattcgtcat tcccgcgctg
     5941 gcgggaatcc ggttcgtcgg gtttttgtca tttccgataa attcctgtgg ctttggtttt
     6001 ttggattctc tctttcaggg aaagaacggc ataagtattt tccaaaccaa acaaaatgcc
     6061 gtctgaaagg ctttcagacg gcattttaag tttgaccggt ttcattcatc ggtatttatg
     6121 aattgaattt caacatcgcc aatctatcct taatctcttt ttccaattcg gcagattcgg
     6181 cgaaaagttt atccaaatcc gctgaaaatc ccgccatttt ttgcgcaaat tcgtcggcgg
     6241 aaatatccac ataatcaatc tttacctcga aatactgccc cgccgacaag ctgtgattct
     6301 tcgctttgat ttcatcgtag ccgattacca cactgaaatc ttccactgcc tgtttgtgcg
     6361 tgaaggtatt gcagattttt ttgttcttct tcgcgggaaa gtacggtttt tttgccgtct
     6421 ttaatttttt cgcccaagcc cgatgcgtcg att
//
LOCUS       DAWGNT010000111         6390 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.111, whole genome shotgun sequence.
ACCESSION   DAWGNT010000111 DAWGNT010000000
VERSION     DAWGNT010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6390)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6390)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6390
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.111"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            65..490
                     /locus_tag="WHR98_001466"
                     /pseudo
     CDS             65..490
                     /locus_tag="WHR98_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701621.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            493..1725
                     /locus_tag="WHR98_001467"
                     /pseudo
     CDS             493..1725
                     /locus_tag="WHR98_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712464.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase family maturation
                     protein NosD"
     gene            1783..2403
                     /locus_tag="WHR98_001468"
     CDS             1783..2403
                     /locus_tag="WHR98_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEZ2308135.1"
                     /translation="MTTHHVELRKVTKRFGAQKAVNQVDLVLKAGESVGLAGHNGAGK
                     STIMKLILGLITPTEGEVMLLGERTGSKAGARLRSQIGYLPETVALHPSLIGIETLDF
                     YAKLKKQPLTQNRGLLERVGISQAAHRRVGTYSKGMRQRLALAQALLGEPKVLLFDEP
                     TTGLDPASRQMFYEVVRELNGRGATVLLSTHALAELDGHADRIIVD"
     gene            2414..2545
                     /locus_tag="WHR98_001469"
                     /pseudo
     CDS             2414..2545
                     /locus_tag="WHR98_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016688339.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            2542..3036
                     /locus_tag="WHR98_001470"
     CDS             2542..3036
                     /locus_tag="WHR98_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide reductase accessory protein NosL"
                     /protein_id="HEZ2308136.1"
                     /translation="MKKTLLAIVAVSALSACRQAEEGPPPLPRQISDRSVGHYCSMNL
                     TEHNGPKAQIFLNGKPDQPVWFSTIKQMFGYTKLPEEPKGIRVIYVTDMGNVTDWTNP
                     NADTEWMDAKKAFYVIDSGFIGGMGAEDALPFGNKEQAEKFAKDKGGKVVGFDDMPDT
                     YIFK"
     gene            complement(3124..4785)
                     /locus_tag="WHR98_001471"
     CDS             complement(3124..4785)
                     /locus_tag="WHR98_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HEZ2308137.1"
                     /translation="MTESITRDSMQYDVVIVGAGPSGLSAAIKLKQLAEKNGREISVC
                     VVEKGSEAGAHSLAGAVIDPIALNELIPDWKEKGAPLTRAVTQDKVLFLTEKKAFNLP
                     VTPNFDNHGNYIVSLGEVVRWLAEQAENLGVEIYPGFAAAEVLYHKDGSVKGIATGNM
                     GVGKDGEPTDSFQPGMELWAQQTLFAEGCRGSLSKQIIERFKLDQNSQPQTYGLGIKE
                     VWEVPSEQHQPGLVMHSAGWPLDSKTYGGAFVYHFDDNKVAVGFVVGLDYQNPYLSPF
                     EEFQRFKTHPEIRKTFEGGRRIAYGARSLIEGGFQSLPKLSFKGGVLIGDAAGFLNMP
                     RIKGIHTAMKSAMLAAEAVFPLLENLEEVEGFDSGKEAADYQQRFEQSWLYQELYAAR
                     NVRPSFKWGVYLGSIYTGIDQMIFRGKAPWTLKHHGKDNEQLKKAAACKPIDYPKPDG
                     VLTFDRLSSVFLANLAHEENQPDHLVLNNPQTMIDVNYKEYASPETRYCPAGVYEIVE
                     ENGNPRLQINAANCVHCKTCDIKDPTQNITWICPEGASGPNYGGM"
     gene            complement(4915..5370)
                     /locus_tag="WHR98_001472"
     CDS             complement(4915..5370)
                     /locus_tag="WHR98_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEZ2308138.1"
                     /translation="MNNFHGQKLTEEDVLKKLDKEQMRASFEDMRRIMPDLGFEAKGY
                     ALSFEQLAQLKIPVIVYLKYRKDDHFSVLRGIDGNTVSLADPSLGHVSMSRAQFLDAW
                     QTREGNLAGKILAVVPKGRDAGGDKAFFTRSPKRQTEFAVGQVKWWRAY"
BASE COUNT         1526 a         1730 c         1619 g         1515 t
ORIGIN      
        1 tatcccgtat gcggattggt tttaagattt gtaaatttga tttgcatcaa aaaatcgccg
       61 atagatgatt catataatat caatattaaa gagtatcggt atatcgggga tagtcatgtc
      121 ctgtttttca atcaaacgta tgtccgcgtt tcgggcgcgg ataacagcgt tttttaccgc
      181 ctttgtcttt ttgacggcgg cactgcccgc ttatgcggag cgtctgcctg attttctggc
      241 gaaaatacag ccttcggaaa tttttccggg tgcggaccgt tacggcaagc cggaaggcaa
      301 gcctatggtt gcccgcgttt acaaaggcga tgagcagttg ggcttggtct atatcacgac
      361 cgatgcggtc aatacgcgcg gttattcgag caaaccgatc gatacgctga tggctttggc
      421 aaatgacggc acgatagccg gagcgaaact ggtcgatcat cacgaaccga ttatgctgat
      481 cggtatcccg catttgcccg cgcccgggcg ggcgatacgc ttaaactggc ttccggcgta
      541 tatcaaacca aactttatat cgacaaaccg attacgattg aagggcctgc cgaccgttcc
      601 gcaaccatcg aaggggacag gagcggccgc accatagccg tacacgcgcc ggacgtaacg
      661 ctccgcaacc tgaccattac acgttccggt atgagcctgc ccgcaatgga tgccggtatt
      721 tatctcgaag aaactgcccc gcgcgccctg attgaacaca acaatatttt ggataattcg
      781 gtcggcgtat atctgcatgg ttctgccgat gcgatggtgc gcgagaataa aatcgtcggc
      841 gacgcgactt tgcgcgtgaa cgagcgcggc aacggcgtta ccgtttggaa cgcacccggt
      901 gcgcaggtcg tcggcaacga catttccaaa gggcgggacg gcattttttc caataccagc
      961 acgcacaaca cctacaaaaa caaccgcttc agcgatttgc gtttcgccgt ccactatatg
     1021 tacaccaacg acagcgaaat cagcggcaat atttccgtgg gcaacaatat gggctatgtg
     1081 ctgatgtttt ccgagcggct caaagtattc gacaatatcg ccgtcggcag ccgcgatcag
     1141 ggcattatgc tcaactatgt caactattcc gatattcacg acaatattat caacaaagcg
     1201 ggcaagtgcg tttttgccta caatgccaac tacgataaac tgtccgccaa tcattttgaa
     1261 aactgccaaa tcggcataca ctttaccgcc gccatcgaag gcacgtctct gcacgacaat
     1321 tcctttatca acaacgaaag ccaggtcaaa tacgtcagca cgcgctttct cgactggagc
     1381 gagggcggac acggcaacta ttggagcgac aacagtgcgt tcgatttgaa cggcgacggc
     1441 ttcggcgaca gcgcgtaccg gcccaacggc atcatcgacc aaatcatctg gcgcgcgccc
     1501 gtattgcgcc tcttgatgaa cagtcccgca atcagcatcg tcaaatgggc gcaggcgcag
     1561 tttcccgccg ttctgcctgg cggcgtggtg gacagcaaac cgctgatgaa gccttatgcc
     1621 cccaaaattc aaacccgtta tcaggcgatg aaggacgagt tgctcaaaga agccgaaacg
     1681 cggcagtcgg aatggggcag ggcggaaaac ggttctttga actagtctgt ttcagacggc
     1741 atccggattc aaatgccgtc tgaaaacaca aaaggaaaaa ccatgaccac acatcatgtc
     1801 gaattgagga aggtaaccaa acggttcggg gcgcaaaaag ccgtcaacca agtcgatttg
     1861 gttttgaagg caggagaaag cgtcgggctt gccggacaca acggcgcggg caagtccacc
     1921 attatgaagc tgatactcgg gctgattacc ccgaccgaag gcgaagtgat gcttttgggc
     1981 gaacgtaccg gtagcaaagc gggggcgcgg cttcgcagcc aaatcggcta cctgcccgaa
     2041 accgttgcgc tgcacccttc gctgatcggc atcgaaacgc tggattttta tgccaaactt
     2101 aaaaaacagc cgctcacgca gaaccggggg ctgcttgagc gcgtcggcat ttcacaggcg
     2161 gcacaccgcc gcgtcggcac ttattctaaa gggatgcgcc aacgccttgc tttggcacaa
     2221 gccctgctgg gcgaacccaa agtcctgctg tttgacgaac cgacaaccgg cctcgaccct
     2281 gcatcaaggc aaatgtttta cgaagtcgtg cgcgaactca acgggcgcgg cgcgaccgta
     2341 ttgctcagca cccacgccct tgccgagttg gacgggcacg ccgaccgcat tatcgtggat
     2401 taaatttaat ccactatatg cgggtatggc gggtttgagc ggacaaatca gcctgaccgt
     2461 ccccgttttg ctgaccgctc aggttttatg ggttatcatt ccgcttgttt tggcagccgg
     2521 aatttttaga aagcgacaaa tatgaaaaaa accctgttgg caattgttgc cgtttccgcc
     2581 ttaagtgcct gccggcaggc ggaagaggga ccgccgcctt taccccggca gattagcgac
     2641 cgttcggtcg gacactattg cagtatgaac ctgaccgaac acaacggccc caaagcccag
     2701 attttcttga acggcaaacc cgatcagccc gtttggttct ccaccatcaa gcagatgttc
     2761 ggctatacca agctgcccga agaacccaaa ggcatccgcg tgatttacgt taccgatatg
     2821 ggcaatgtta ccgattggac gaatcccaat gccgacacgg agtggatgga tgcgaaaaaa
     2881 gccttttacg tcatcgacag cggctttatc ggcggtatgg gtgcggaaga cgcgctgccg
     2941 ttcggcaaca aggaacaggc tgaaaaattt gcaaaggata aaggcggtaa ggttgtcggt
     3001 ttcgacgata tgcctgatac ctatattttc aaataatatt gaaaaaaccg gccgaaactt
     3061 taaaaacgag tttcggtcgg tttttctttt cttgttcggt atagtgtcgg caggaaagaa
     3121 ccttcacatc ccgccgtaat tcggcccgct cgcgccttcg gggcaaatcc aagtgatgtt
     3181 ttgcgtcggg tctttgatgt cgcaggtttt gcagtgcacg cagtttgccg cgttgatttg
     3241 caggcgcgga ttgccgtttt cttcaacaat ttcgtacacg ccggccggac aatagcgcgt
     3301 ttcgggcgag gcgtattctt tgtagttcac gtctatcatc gtttgcggat tgttcagcac
     3361 caaatggtcg ggctggtttt cttcgtgcgc gagattggca aggaagacgc tgctcaagcg
     3421 gtcgaaggtc aacacgccgt cgggtttcgg ataatcaatc ggcttgcacg cggcggcttt
     3481 tttaagctgc tcgttgtctt tgccgtgatg tttcaaggtc cacggggctt tgcctctgaa
     3541 aatcatctga tcgatgccgg tgtagattga gccgaggtaa acgccccatt tgaatgacgg
     3601 acggacattg cgcgcggcgt aaagctcttg atacagccag ctttgttcaa aacgttgctg
     3661 ataatccgcc gcctctttgc cgctgtcgaa accctccact tcttcaaggt tttccaacaa
     3721 ggggaacacg gcttcggcgg cgagcatggc ggatttcatc gcggtatgga tgcctttgat
     3781 gcgcggcata ttgaggaaac ctgccgcatc gccgattaaa acgccgcctt tgaacgagag
     3841 cttcggcaaa ctttgaaaac cgccttcaat cagcgaacgc gcaccgtaag caatgcggcg
     3901 gccgccttca aaggttttgc ggatttcggg atgggttttg aaacgttgga actcttcaaa
     3961 cggcgacaga taaggatttt gatagtccaa accgaccacg aagccgacgg caactttgtt
     4021 gtcgtcgaaa tggtaaacaa acgcgccgcc gtaggttttg ctgtccagcg gccagcctgc
     4081 gctgtgcatc accaaaccgg gctgatgctg ttcggacggc acttcccaaa cttctttaat
     4141 gcccaagccg taagtttgcg gctggctgtt ttggtcgagt ttgaagcgtt cgatgatttg
     4201 cttggaaagc gaacctcggc aaccttcggc aaacagggtt tgctgtgccc aaagctccat
     4261 gccgggctgg aatgaatcgg tcggttcgcc gtctttgccc acgcccatat tgccggttgc
     4321 aatgcctttg accgaaccgt ctttgtgata cagcacttcg gcagcggcaa agcccggata
     4381 aatttccacg cccaaatttt ccgcctgctc cgccaaccag cgtacgactt cgcccaagct
     4441 gacgatgtag ttgccatgat tgtcgaaatt gggggtaacg ggcaggttga acgctttttt
     4501 ctcggtcagg aacaacacct tgtcctgcgt taccgcgcgc gtcagcggcg cgcctttttc
     4561 tttccagtcg ggaatcaact cattcagcgc aatcggatcg ataaccgcgc ccgccagcga
     4621 atgcgcgcct gcttcagaac ctttctccac cacgcaaacg ctgatttcgc gcccgttttt
     4681 ttcggcaagc tgcttgagtt tgatggcggc ggacaaaccc gacgggcctg cgccgacaat
     4741 cacgacatcg tattgcatac tgtcgcgggt gatggattct gtcatggcgg ttcctgtgta
     4801 tttattattg aattgcaaat ccgtaattat acaacgggaa catatagtta ccaaatacaa
     4861 caaaggtcgt ctgaaaacca tattttcggt tttcagacgg cctttgtcga aatttcaata
     4921 agcacgccac cattttacct gtccgaccgc aaactccgtc tgacgtttcg gactgcgtgt
     4981 gaaaaacgcc ttatccccgc cggcatccct ccctttcggc acaaccgcca aaatcttacc
     5041 tgccaaattt ccctcacggg tttgccaagc atccaaaaac tgcgccctgc tcattgaaac
     5101 atgacccagc gacgggtcgg caagcgaaac cgtattgccg tctataccgc gcaataccga
     5161 gaaatgatca tccttgcggt atttcagata cacgatgacg gggattttca actgcgcaag
     5221 ctgctcgaaa gacagggcat agcctttcgc ctcaaaaccc aaatcaggca tgatgcgccg
     5281 catatcctca aacgacgcgc gcatctgctc cttatccagc tttttcaaca cgtcctcttc
     5341 cgtcagcttt tgcccgtgaa aattgttcaa aagccgtcgc caccgaagcc gccccgcagg
     5401 aaaaatccaa atcctgcttt acaatattga aatcgcgcct ttctttccaa ctctgcactt
     5461 tgatttttcc ataagcaaca ggattatagt ggattaaatt taaaccagta cggcgttgcc
     5521 tcgccttgcc gtactatctg tactgtctgc ggtttcgtcg ccttgtcctg atttttgtta
     5581 atccactata ggtttccgtg cggacgtgtt cagattcccg ccttcgctgg aatgacggcg
     5641 gagcgatttc tacttttccg ataaatgacc gtaacttaaa atcccgtcat ccccacgaaa
     5701 gcaaaaatcc cgcctgtcgg atttcggttt ttttgggcgt ttcgggaaac ttataaatcg
     5761 tcattcccgc gcaggcggga atccggtttg ctcggtttcg gtttttcggg cgtttcggga
     5821 aactgatgaa tcgtcattcc cgcgcaggcg ggaatctaga acgcgggacg gcggcaatat
     5881 tcaaaggttg tctgaaaatt cagaggttct agattcccac tttcgtggga atgacgggat
     5941 ataggtttcc ctacggacgt gttcagattc ccgctttcgc gggaatgacg gcggagcgat
     6001 ttctactttt ccgataaatg accgcaacct aaaacccatc cttcccgcaa aaacagaaaa
     6061 acaaaaacct aaaatcccgt catccccacg ataacagttg cgtaattgcg tagagtgggc
     6121 ttcagcccaa cgttttttct ttttcggtcg ttgattggtg ggctgaagcc cacccttgta
     6181 tatcggaact cccgtatcat agcaacaaac cgcccggccg ccacccgcgc ccacccaagg
     6241 cacacaaccg ttgcgtagca cagggagcgg cagggcaacc catcgacaca accggacagt
     6301 tgccggacaa cacaaccgaa tgcaaggcag gttgatgatg agtacccgat accattacgc
     6361 aggtatagtg aattaaatct aaggggctgt
//
LOCUS       DAWGNT010000112         6355 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.112, whole genome shotgun sequence.
ACCESSION   DAWGNT010000112 DAWGNT010000000
VERSION     DAWGNT010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6355
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.112"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(387..1604)
                     /gene="nqrF"
                     /locus_tag="WHR98_001473"
     CDS             complement(387..1604)
                     /gene="nqrF"
                     /locus_tag="WHR98_001473"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HEZ2308139.1"
                     /translation="MEIILGIVMFTVIVLVLALMILFAKSKLVSEGDITIKVNGEKEL
                     TMPAGGKLLGALANEGIFIPSACGGGGSCGQCRVVVKSGGGDILPTELSHISKREARE
                     GCRLSCQVSVKTDMDIEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFR
                     AGGYIQIEAPPHTVAYKDFDIPKEYHEDWDKYNLWQYVSKVDEPILRAYSMASYPEEK
                     GIIMLNVRIATPPPRVPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAEMVFI
                     GGGAGMAPMRSHIFDQLKRLNSKRKITFWYGARSKREMFYVEDFDQLAAEFPNFTWHV
                     ALSDPLPEDNWDGYTGFIHNVVYENHLKNHEAPEDCEFYMCGPPIMNQSVIKMLKDLG
                     VEDENILLDDFGG"
     gene            complement(1618..2211)
                     /gene="nqrE"
                     /locus_tag="WHR98_001474"
     CDS             complement(1618..2211)
                     /gene="nqrE"
                     /locus_tag="WHR98_001474"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HEZ2308140.1"
                     /translation="MEHYLSLFIKSVFIENMALSFFLGMCTFLAVSKKVSTAFGLGVA
                     VIFVLGLSVPVNQLVYSLLKDGAIVEGVDLTFLKFITFIGVIAALVQILEMFLDKFVP
                     ALYNALGIYLPLITVNCAIFGAVSFMAQREYNFGESVVYGFGAGLGWMLAIVALAGIT
                     EKMKYSDAPKGLKGLGITFIAAGLMAMAFMSFSGIQL"
     gene            complement(2215..2841)
                     /locus_tag="WHR98_001475"
     CDS             complement(2215..2841)
                     /locus_tag="WHR98_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HEZ2308141.1"
                     /translation="MADMKRLKHLMFSPFIDNNPIALQVLGICSALAVTTKLQTAIVM
                     GISVALVTGFSSFFISLVRNYIPNSIRIIVQMAIIASLVTLVDQLLQAFAYELSKQLS
                     VFVGLIITNCIVMGRAEAFAMKEPPLESLIDGIGNGAGYGIMLLVVATVRELIGSGKL
                     LGYTVFQTVQDGGWYQTNGLFLLAPSAFFIIGFLIWGLRTWKPEQAEE"
     gene            complement(2841..3617)
                     /locus_tag="WHR98_001476"
     CDS             complement(2841..3617)
                     /locus_tag="WHR98_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HEZ2308142.1"
                     /translation="MAKKFDKDSFSGTLIVVLAVSLICSVIVAGAVVGLKPIQEKQKL
                     QDKQGYILSVAGLMDKNTDISKTFAERIEQRVVDLATGEYVADAPKDFSARVAGKDPA
                     QSIQIKPEDDLAGIKSRAKYTEVYLVKGEDGKIGQIILPMHGNGLWSVMYGFVAIQPD
                     GNTINGITYYEQGETPGLGGEIGNPLWQQKFVGKKLFDGQGKLALHVGKGAGSDKEHG
                     VDALSGASLTSKGVQGSFAYWFGENGYIPYLNKLKSAGAQ"
     gene            complement(3610..4842)
                     /locus_tag="WHR98_001477"
     CDS             complement(3610..4842)
                     /locus_tag="WHR98_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HEZ2308143.1"
                     /translation="MGLKHFLEKIEPHFLPGGKHEKWYALYEAAATIFYTSGAVTRKA
                     AHVRDALDSKRMMILVWLALFPAMFYGMYNVGVQAFGALTPDLLQQNIANDWHYTLAD
                     ALGINMSSEASVLGKMLFGAIYFLPIYATVFAVGGFWEVLFATVRKHEINEGFFVTSI
                     LFALIVPPTLPLWQAALGISFGVVVAKEVFGGTGKNFMNPALAGRAFLFFAYPANLSG
                     DAVWTAVDGYSGATALAQWAAHGADGLKNAVTGQTITWMDAFIGKLPGSIGEVSTLAL
                     LIGGAFIVFARIASWRIIAGVMIGMIAMSSLFNFIGSDTNAMFAMPWYWHLVVGGFAI
                     GMLFMATDPVSASFTNVGKWWYGALIGVMCVLIRVVNPAYPEGMMLAILFANLFAPIF
                     DYFVAQANIKRRKARSNG"
     gene            complement(4845..6188)
                     /locus_tag="WHR98_001478"
     CDS             complement(4845..6188)
                     /locus_tag="WHR98_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HEZ2308144.1"
                     /translation="MIKIKKGLNLPIAGRPEQVIYDGPVITEVALLGEEYAGMRPSMK
                     VKEGDAVKKGQVLFEDKKNPGVVFTAPVSGKIAAIHRGEKRVLQSVVIAVEGNDEIEF
                     ERYAPEALANLSGEEVRRNLIQSGLWTALRTRPFSKIPAVDAEPFAIFVNAMDTNPLA
                     ADPVVVIKEAAEDFRRGLLVLSRLTEHKIHVCKAAGADVPSENAANIETHEFGGPHPA
                     GLSGTHIHFIEPVGANKTVWTINYQDVIAIGRLFATGRLNTERVVALGGSQVNKPRLL
                     RTVLGAKVSQITAGELVDADNRVISGSVLNGAIAQGAHDYLGRYHNQISVIEEGRSKE
                     LFGWVAPQPDKYSITRTTLGHFLKNKLFKFTTAVNGGDRAMVPIGTYERVMPLDILPT
                     LLLRDLIVGDTDSAQALGCLELDEEDLALCSFVCPGKYEYGPLLRKVLETIEKEG"
BASE COUNT         1530 a         1629 c         1671 g         1525 t
ORIGIN      
        1 aaccggtgtt ttaccaaccg gtttgtcaag gtttaatggt cagcgcgtcc tgcgttgcca
       61 tttattgtag tagtattcgt aatcttcatc acgaccgccc gattcaatcc aatcatcgta
      121 ttcggggctg ttttcaaagc tgtcagacat tatccgtacc tcgcaaaatg ggtttatcga
      181 tactttttta gttatggaat caaccataac taaaaagaag tatacttctt tgcttttccg
      241 ccagaatatt taaccgcaca tccgccgcag ggtaaaaatg gaagttcaac gatattgata
      301 ctggtatggg cggatgccgt ctgaagggtg ttcggacggt atcggataaa aaaaggaaga
      361 aaccgaagtt tcttcctttt tgtctgttag ccgccgaaat cgtccaagag gatgttttcg
      421 tcttccacac ccaagtcttt gagcattttg atgacggact ggttcataat cggaggcccg
      481 cacatataaa attcgcagtc ttccggcgct tcgtgatttt tcaggtggtt ttcgtaaacc
      541 acgttgtgaa tgaagcctgt gtaaccgtcc cagttgtctt caggcagcgg atcggacagg
      601 gcgacgtgcc acgtgaagtt cgggaattct gccgcgagtt ggtcgaagtc ttcgacatag
      661 aacatctcgc gtttggaacg tgcaccatac cagaaggtaa ttttgcgttt ggagttcaaa
      721 cgtttcagct ggtcgaaaat gtgggaacgc atcggagcca tacccgcgcc gccgccgata
      781 aataccattt cggcatcggt atctttggca aagaattcgc caaacggacc ggaaatcgtt
      841 actttatcac cgggtttgag cgaccagatg taggacgaca tttgtcccgg aggcgcatca
      901 ggtacgcgtg ggggcggcgt ggcgatacgc acgttcagca taatgatgcc tttttcttca
      961 gggtatgaag ccatagagta ggcgcgcaaa atcggctcgt ccactttgga aacgtattgc
     1021 cacaaattgt atttgtccca gtcttcgtga tattccttag gaatgtcgaa gtctttgtag
     1081 gcaacagtgt gaggaggagc ttcaatttga atgtagccgc cggcgcggaa ggggacttct
     1141 tcgccttcgg gaatggcaag cttgagttct ttaatgaacg tggctttgtt atcgttggag
     1201 atgacggtgc attcccattt tttcacgccg aacacttctt cgggcacttc gatgtccatg
     1261 tcggttttga cgctgacttg gcacgacaga cggcagcctt cgcgtgcttc gcgtttgctg
     1321 atgtgggaca gctcggtcgg caggatgtcg ccgccgccgc tttttacgac gacgcggcat
     1381 tgtccgcacg aaccgccccc gccgcaggcg gaggggataa agatgccttc gttggcaagc
     1441 gcgcccaaga gtttgccgcc ggcgggcatc gtcagctctt tttcgccgtt gactttgatg
     1501 gtgatgtcgc cttcgctgac cagtttggat ttggcaaata gaatcatcag tgccaaaacc
     1561 aaaacgatga cggtaaacat cacgatacct aaaataatct ccataccggt ccctttctta
     1621 taactggatg ccggagaacg acataaacgc catcgccatc aggccggcgg cgataaaggt
     1681 aatgcccaag cctttgaggc ctttgggagc gtccgaatat ttcatttttt cggtaatgcc
     1741 cgccaaagcg acaatcgcca acatccagcc caagcccgcg ccgaagccgt atacaacgga
     1801 ctcgccgaag ttgtattcgc gttgcgccat aaacgatacg gcgccgaaaa tcgcgcagtt
     1861 cacggtaatc agcggcaggt agatgcccaa cgcgttatag agggcgggga cgaatttatc
     1921 caagaacatt tccaaaatct gcaccaaagc ggcaatcacg ccgatgaagg tgatgaattt
     1981 caaaaaggtc aaatccacgc cttcgacaat cgcgccgtct ttgagcagcg agtaaacgag
     2041 ttggttgaca gggacggaca gcccgagtac gaaaattacc gccacaccca aaccgaatgc
     2101 ggtggatact tttttggata ccgccaaaaa cgtgcacata cccaaaaaga aggatagtgc
     2161 catattttca atgaagacgg atttgatgaa gaggctcaaa tagtgttcca tagcttattc
     2221 ctccgcctgt tcgggtttcc aggtacgcag tccccaaatc aaaaagccga tgatgaagaa
     2281 cgcgctgggg gcgagcagga acaagccgtt ggtctgatac cagccgccgt cctgcacggt
     2341 ttggaaaacg gtgtagccca agagtttgcc cgagccaatc agttcgcgga cggtggcgac
     2401 gacaagcagc attatcccgt agcccgcgcc gttgccgatg ccgtcgatca ggctttccag
     2461 cggcggctct ttcatcgcaa atgcttcggc gcggcccatc acgatacagt tggtaataat
     2521 cagaccgacg aatacggaaa gctgtttgga caattcgtag gcaaatgcct gcaagagttg
     2581 gtcgaccagc gtaaccagcg acgcgataat cgccatttgc acgataatac ggatgctgtt
     2641 ggggatgtag ttgcgtacca gcgaaatgaa gaagctggaa aaaccagtta ccaaagctac
     2701 ggaaataccc atcacgatgg ccgtctgaag tttggtggta accgccaaag ccgaacaaat
     2761 acccaaaacc tgcaaggcaa tcgggttgtt gtcgataaag ggtgaaaaca tcaaatgttt
     2821 caagcgtttc atatcagcca ttattgcgct cctgctgatt tcaatttgtt caggtagggg
     2881 atatagccgt tttcgccgaa ccagtaggcg aacgaacctt gcacgccttt ggatgtcagc
     2941 gatgcaccgg agagggcatc tacgccgtgt tctttgtccg aacccgcgcc tttgccgacg
     3001 tgcagggcga gtttgccttg tccgtcaaac agttttttgc cgacgaattt ttgctgccac
     3061 aaaggattgc cgatttcgcc gcccaagccc ggggtttcgc cttgctcgta gtaggtaatg
     3121 ccgttgatgg tgttgccgtc gggttggatg gcgacaaagc cgtacatgac cgaccacaaa
     3181 ccgttgccgt gcatcggcag gatgatttgg ccgattttgc cgtcttcgcc ttttaccaaa
     3241 taaacctcgg tgtatttggc acggcttttg atgcctgcca aatcgtcttc aggtttgatt
     3301 tggatgcttt gggcagggtc tttgccggca acgcgtgcgc tgaagtcttt aggcgcatca
     3361 gcgacatatt cgccggttgc caagtccacg acacgttgct cgatacgctc ggcaaaggtt
     3421 ttgctaatgt cggtgttttt atccatcaaa ccggctacgc tcaagatata gccttgtttg
     3481 tcttggagtt tttgtttctc ttggatgggt ttcaagccga cgaccgcacc ggcaacgatg
     3541 accgagcaaa tcaggctgac cgccaacacg acaatcagcg tgccgctgaa gctgtcttta
     3601 tcgaatttct tagccattgc tgcgcgcctt tctgcgtttg atgttcgctt gtgcgacgaa
     3661 atagtcgaaa atcggggcaa acaggttggc aaacagaatc gccaacatca tgccttcggg
     3721 gtaagccgga ttgaccacac ggatcaatac gcacatcaca ccgattagcg cgccgtacca
     3781 ccatttgccg acattggtaa aggaagcaga aacggggtcg gttgccataa acagcatacc
     3841 gatggcgaag ccgccgacga ccaaatgcca gtaccaaggc atagcaaaca tagcgttggt
     3901 gtccgaaccg atgaagttga acagcgaaga catggcaatc ataccgatca tcacgccggc
     3961 aataatgcgc caagaagcga tgcgggcaaa cacgataaac gcgccgccga ttaagagtgc
     4021 caaagtggag acttcgccga tggagccggg cagtttgccg ataaacgcat ccatccaagt
     4081 gatggtttga ccggttacgg cgtttttcag gccgtctgca ccgtgtgccg cccattgcgc
     4141 cagcgcggtt gcgccggaat agccgtcaac cgccgtccaa accgcatcgc cgctcaagtt
     4201 ggcagggtag gcgaagaaca ggaaggcacg gcctgccagc gcagggttca tgaagttttt
     4261 acctgtaccg ccgaatactt ctttcgcaac cacaacgccg aaagaaatac ccaaagctgc
     4321 ctgccacagc ggcagcgtgg gcggaacgat taaggcaaac agaatcgagg taacaaagaa
     4381 accttcgttg atttcgtgtt tgcgcacggt ggcgaacaag acttcccaga aaccgccgac
     4441 ggcaaatacg gtcgcgtaaa tcggcaggaa gtaaatcgcg ccgaacagca ttttgcccaa
     4501 cacgctcgct tcagacgaca tattgatgcc caaagcgtcg gcaagggtgt aatgccagtc
     4561 gttggcgatg ttttgttgca gcaaatcagg cgttaacgca ccgaatgcct gtacgccgac
     4621 gttgtacata ccgtagaaca tggcagggaa caaagccagc cacaccaaaa tcatcatgcg
     4681 tttggagtcg agcgcatcgc ggacgtgtgc cgctttgcgc gttaccgcac cggatgtata
     4741 gaaaatcgtc gccgcagctt cgtagagggc ataccatttt tcatgtttgc cgcctggcag
     4801 gaagtgcggt tcgatttttt ccagaaaatg tttcaagccc ataatcagcc ttccttctca
     4861 atggtttcca gcaccttacg caacagcggg ccgtattcgt atttgcccgg gcagacgaag
     4921 ctgcacaaag cgaggtcttc ttcgtccaat tccaagcaac ccaatgcctg cgcgctgtcg
     4981 gtatcgccga cgattaaatc gcgcaaaagc agggtaggca ggatgtctag cggcattacg
     5041 cgctcgtaag taccaatcgg caccatggcg cggtcgccac cgttgacggc tgtcgtgaac
     5101 ttgaagagtt tgtttttcag gaaatgaccg agggtcgtac gcgtgatcga gtatttgtcc
     5161 ggttgtggcg caacccagcc gaacagttct ttactgcggc cttcttcgat aacggaaatc
     5221 tgattgtggt agcgtcccaa ataatcgtgc gcgccttgtg caatcgcgcc gttcaatacc
     5281 gaaccggaaa tcacgcggtt gtctgcgtca accaattcgc ccgcagtaat ttgcgatact
     5341 ttcgcaccca aaacggtacg caagaggcgt ggtttgttga cttgagaacc acccaaggca
     5401 accacgcgct cggtgttcag acggcctgtt gcaaacaaac gtccgatggc aattacatct
     5461 tgataattga tggtccaaac ggttttgttc gcaccgacag gctcaatgaa atgaatgtgc
     5521 gtgccactca aaccggcagg atgcgggccg ccgaattcat gtgtttcgat gttggcagca
     5581 ttttcagacg gcacgtctgc gccggctgcc ttacaaacat ggattttatg ctcggtcagg
     5641 cggcttaata ccaacaggcc gcgtctgaaa tcctcggcgg cttctttgat cacaaccaca
     5701 gggtctgccg ccagcggatt ggtgtccatc gcattgacga agatggcgaa cggctcggca
     5761 tcgacggcag ggattttgct gaacggacgg gtacgcagcg cagtccacaa accggattgg
     5821 atcagattgc ggcgcacttc ttcgccgctt aagtttgcca acgcttcggg cgcgtagcgt
     5881 tcgaactcga tttcgtcgtt gccttcaacg gcaatcacga ccgactgaag tacgcgcttt
     5941 tcgccgcgat ggatggcggc gattttgcct gaaaccggcg cggtaaacac cacgcccgga
     6001 ttctttttgt cttcaaacag cacttggcct tttttgacgg catcgccttc cttgactttc
     6061 atcgaggggc gcataccggc atattcttcg ccaagcaacg cgacttcggt aatgacgggc
     6121 ccgtcataaa tgacttgctc cggtctgccc gcgatgggca ggtttagacc ttttttgatt
     6181 ttaatcatat atttgcatta cttgtgatgg ttaaggtaaa aacggcgtgt tttgataccg
     6241 tgtcgcgtgg catcaaaagc attgaataaa ttaatgtagc aaagtgttag attctatcag
     6301 gaattgtacc tgtttgtcag atttgctgct tttttccttg cggaagccgt tttta
//
LOCUS       DAWGNT010000113         6351 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.113, whole genome shotgun sequence.
ACCESSION   DAWGNT010000113 DAWGNT010000000
VERSION     DAWGNT010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6351
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.113"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(35..301)
                     /locus_tag="WHR98_001479"
     CDS             complement(35..301)
                     /locus_tag="WHR98_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HEZ2308145.1"
                     /translation="MARMVFCVKLNKEAEGMKFPPLPNELGKRIFENVSQEAWAAWTR
                     HQTMLINENRLSLADPRAREYLAQQMEQYFFGDGADAVQGYVPQ"
     gene            complement(374..844)
                     /gene="rlmH"
                     /locus_tag="WHR98_001480"
     CDS             complement(374..844)
                     /gene="rlmH"
                     /locus_tag="WHR98_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEZ2308146.1"
                     /translation="MNITVLAVGTKMPRWVDEAVAEYAKRFGRDVAYALKEIKPEKRG
                     AGVNAAQGMAAEEKRILEAIPQGAFLVVLDERGKAPTSVELAEHLKSWQQNGEHVCFV
                     IGGADGMTDRLKQQARIMMRLSSLTLPHGMVRVLLTEQLYRAASILHNHPYHRE"
     gene            complement(898..1284)
                     /gene="rsfS"
                     /locus_tag="WHR98_001481"
     CDS             complement(898..1284)
                     /gene="rsfS"
                     /locus_tag="WHR98_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEZ2308147.1"
                     /translation="MNEQELQDLQKMVGVAVNALEDIKAKDISVLETQDKTSLFARMI
                     IASGDSTRQVKALANNVAVDLKEAGFEILSTEGDSGEWTLVDAGDLVVHVMLPAVRDF
                     YDIDTLWGGEKPSFHAGMQKPWHAAD"
     gene            complement(1343..1948)
                     /gene="nadD"
                     /locus_tag="WHR98_001482"
     CDS             complement(1343..1948)
                     /gene="nadD"
                     /locus_tag="WHR98_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEZ2308148.1"
                     /translation="MKKIGLFGGTFDPIHNGHLHIARAFADEIGLDTVVFLPAGGPYH
                     KDAASASAADRLAMVELATAEDARFAVSDCDIVREGATYTFDTVQIFRQQFPSAQLWW
                     LMGSDSLMKLHTWKKWQMLVRETNIAVAMRQGDSLHQTPRELHAWLGKSLQDGSVRIL
                     SAPMHNVSSTEIRRNLASQGVSDGIPPAAARYIREHGLYEK"
     gene            complement(1945..2544)
                     /locus_tag="WHR98_001483"
     CDS             complement(1945..2544)
                     /locus_tag="WHR98_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEZ2308149.1"
                     /translation="MSELDNILAHNRQFVESGEYEKYFTDKYPERGLAVLSCMDARII
                     GLLPDALGLKNGDAKLIKNAGALVTHPWGSVMRSLLVAVFELKVREIMVIAHHDCGMQ
                     GLNAEEFLGRVRESRIPEDRIETLRYAGVDLDGWLTGFDNVEDSVRHTVELIRRHPLM
                     PRHIAVHGLVIHPVTGKLTLVVDGSVSDGMDLSEGMETS"
     gene            complement(2573..4114)
                     /locus_tag="WHR98_001484"
     CDS             complement(2573..4114)
                     /locus_tag="WHR98_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEZ2308150.1"
                     /translation="MDGRRWAVWGAFALLPSAFLAVMVVAPLWAVAAYDGLAWRAVLS
                     DAYMLKRLAWTVFQAAATCVLVLPLGVPVAWVLARLAFPGRALVLRLLMLPFVMPTLV
                     AGVGVLALFGADGLLWRGRQDTPYLLLYGNVFFNLPVLVRAAYQGFVQVPAARLQTAR
                     TLGAGAWRRFWDIEMPVLRPWLAGGVCLVFLYCFSGFGLALLLGGSRYATVEVEIYQL
                     VMFELDMAVASVLVWLVLGVTAAAGLLYAWFGRCAVSDKAVSPVMPSPPQSVGEYVLL
                     AFAAAVLSVCCLFPLLAIVVKAWSAGESWRVLMESETWQAVWNTLRFSATAVYAAAVL
                     GVVYAAAARRSAWMRGLMFLPFMVSPVCVSAGVLLLYPQWTASLPLLLAMYALLAYPF
                     VAKDVLSAWDALPPDYGRAAAGLGANGFQTACRITFPLLKPALRRGLTLAAATCVGEF
                     AATLFLSRPEWQTLTTLIYAYLGRAGEDNYARAMVLTLLLSAFALGIFLLLDNGEGGK
                     QTETL"
     gene            4354..5739
                     /locus_tag="WHR98_001485"
     CDS             4354..5739
                     /locus_tag="WHR98_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HEZ2308151.1"
                     /translation="MDGWTQTLSAQTLLGISAAAIILILILIVKFRIHALLTLVIVSL
                     LTALATGLPTGSIVNDVLVKNFGGTLGGVALLVGLGAMLGRLVETSGGAQSLADALIR
                     MFGEKRAPFALGVASLIFGFPIFFDAGLIVMLPIVFATARRMKQDVLPFALASIGAFS
                     VMHVFLPPHPGPIAASEFYGANIGQVLILGLPTAFITWYFSGYMLGKVLGRTIHVPVP
                     ELLSGGTQDNDLPKEPAKAGTVVAIMLIPMLLIFLNTGVSALISEKLVSADETWVQTA
                     KIIGSTPIALLISVLVALFVLGRKRGESGSALEKTVDGALAPVCSVILITGAGGMFGG
                     VLRASGIGKALADSMADLGIPVLLGCFLVALALRIAQGSATVALTTAAALMAPAVTAA
                     GFTDWQLACIVLATAAGSVGCSHFNDSGFWLVGRLLDMDVPTTLKTWTVNQTLIALIG
                     FALSALLFAIV"
     gene            5759..6277
                     /locus_tag="WHR98_001486"
     CDS             5759..6277
                     /locus_tag="WHR98_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HEZ2308152.1"
                     /translation="MTTHFVVMGVCGCGKTTAALSLQKHLGQCPHAEGDEFHTQANRD
                     KMGAGIPLTDEDRYPWLGNLRDWMTQQAQNGANHTIVTCSALKRGYRDILRGAEGKAA
                     FIHLSPPQDINLERMMSRKGHYMKAGMLDSQLEILEELGEGEYGVKIANPGTPEAVEA
                     DILNWVASENLL"
BASE COUNT         1398 a         1979 c         1684 g         1290 t
ORIGIN      
        1 gtttcggaca gcctgtgttc aaaacggaaa accgttattg cggaacgtat ccctgaacgg
       61 catccgcgcc gtcgccgaag aaatactgct ccatctgctg agccaggtat tcgcgcgcgc
      121 gcggatcggc gaggcttaaa cggttttcgt taatcagcat cgtttggtgg cgcgtccacg
      181 ccgcccacgc ttcttgcgat acgttttcaa aaatgcgctt gcccaattcg ttgggaagcg
      241 gcggaaattt catgccttcg gcttctttgt tgagcttgac gcagaatacc atgcgtgcca
      301 tagcggattc ctttgctgtg ttcagaaata acggggtaat tttaaccgat tagggatacg
      361 gacaaaagcc ttcttattcc cgatgatagg gatggttgtg caggatggag gcggcgcggt
      421 agagctgctc ggtcagaagg acgcgcacca tcccgtgcgg cagggtcagg ctggacaggc
      481 gcatcattat acgggcttgt tgtttgaggc ggtcggtcat tccgtccgcg ccgccgatga
      541 cgaagcagac gtgttcgccg ttttgctgcc agcttttgag gtgttccgcc agctcgacgg
      601 aggtcggtgc tttgccgcgt tcgtcaagaa cgacgaggaa cgcgccttgc ggaatggctt
      661 caaggatgcg tttttcttcc gccgccatac cttgggcggc attcacgccc gcgccgcgtt
      721 tttcgggttt gatttctttg agtgcgtagg cgacgtcgcg tccgaagcgt ttggcgtatt
      781 cggcgacggc ttcgtcaacc cagcgcggca ttttggtgcc gactgccaaa acggtaatgt
      841 tcaatgcttt ctcccttaca ggaaaatgcc gtctgaacat tcagacggca tcgggaatca
      901 gtctgccgcg tgccacggct tctgcattcc ggcgtggaaa ctcggtttct cgccgcccca
      961 aagggtgtcg atgtcgtaga agtcgcgcac ggcagggagc atgacgtgga caacgaggtc
     1021 gcctgcgtca accagcgtcc attcgccgct gtctccttcg gtactgagga tttcaaaacc
     1081 ggcttctttc aaatcgacgg caacgttgtt ggccagtgct ttgacttggc gcgtactgtc
     1141 gccgctggcg ataatcattc tggcaaacag cgaagttttg tcttgcgttt cgagaacgga
     1201 aatgtctttg gctttgatgt cttcgagggc gttgacggcg accccgacca ttttttgcag
     1261 gtcttgcagt tcttgttcgt tcattatttt cctaacggga tgttttcaga cggcattata
     1321 gccgtttctt actgatttga ctttattttt catacaaacc gtgttcgcgg atgtagcgtg
     1381 cggcggcagg cgggatgccg tctgaaacgc cttggctggc aaggttgcgg cggatttccg
     1441 ttgacgacac attatgcatc ggggcggaca agatgcggac gctgccgtcc tgaagggact
     1501 tgcccagcca cgcgtgcagt tcgcgcgggg tttggtgcag gctgtcgccc tgcctcatgg
     1561 cgacggcgat attggtttcg cgcacgagca tctgccattt tttccatgtg tgcagcttca
     1621 tcaggctgtc gctgcccatc agccaccaga gttgcgcgga tgggaactgc tggcggaaga
     1681 tttggacggt atcaaaagta taggttgcac cttctcggac gatgtcgcaa tcgctgacgg
     1741 caaaacgcgc gtcttctgcc gtcgccagtt cgaccatggc aaggcggtcg gcggcggaag
     1801 cggaggctgc gtctttgtga tacgggccgc ctgccggcag gaaaacaacc gtgtccaagc
     1861 cgatttcgtc ggcaaaggcg cgggcgatgt ggagatgccc gttgtgtatc gggtcgaaag
     1921 tgccgccgaa cagtccgatt ttcttcatga tgtttccatt ccttccgata agtccatgcc
     1981 gtctgaaaca ctgccgtcca caaccagcgt cagtttgccg gtaacgggat ggatgaccag
     2041 tccgtgaacg gcaatatggc gcggcatcag cggatggcgg cggatgagtt cgacagtatg
     2101 gcgcacgctg tcttcgacgt tgtcgaaacc ggtcagccag ccgtcgaggt cgacacctgc
     2161 ataacgcagg gtttcgatac ggtcttcggg aatccggctt tcccggacgc gcccgaggaa
     2221 ttcttcggca ttcagcccct gcataccgca atcgtgatgg gcgatgacca taatctctct
     2281 gaccttcagt tcaaacacgg caaccaaaag gctccgcatc accgaacccc acgggtgcgt
     2341 aaccagcgcg ccggcatttt taatcagctt ggcatcgccg tttttcaaac ccaacgcgtc
     2401 gggcagcagc ccgataatcc gcgcatccat acaggacaaa accgccagcc cgcgttcggg
     2461 gtatttgtcg gtaaagtatt tttcatattc gcccgactcg acaaactgcc ggttatgggc
     2521 aaggatgtta tccaactcgc tcattttgcc gtcctctgaa aaagggttcg cattataacg
     2581 tttccgtctg ttttccgcct tcgccgttgt ccaacagcag gaaaatgccc agcgcgaacg
     2641 ccgacaacag caatgtcaac accattgccc gcgcgtaatt atcctcaccc gcgcgtccca
     2701 aataggcata aatcaaagtc gtcagcgtct gccactcggg acgcgacagg aacaaggttg
     2761 ccgcaaattc gcccacgcag gttgccgccg ccaaagtcag accgcgccgc aacgccggtt
     2821 tcaagagggg gaacgtgatg cggcatgccg tctgaaagcc gtttgcaccc aaacccgctg
     2881 ccgccctgcc gtaatccggc ggcagtgcat cccaggctga taaaacatct tttgccacaa
     2941 acggatacgc cagcagcgca tacatcgcca gcagcagcgg caacgaagcc gtccactgcg
     3001 gataaagcag cagcacgccc gccgaaacac aaaccggcga caccataaac ggcaaaaaca
     3061 tcagcccgcg catccacgcc gaccgccgcg ccgccgccgc atacaccaca cccaaaaccg
     3121 ccgccgcata caccgccgtc gccgagaagc gcaaagtatt ccacaccgcc tgccacgttt
     3181 cactttccat taacacacgc cacgattcgc cggccgacca cgctttcaca acaattgcca
     3241 acaaaggaaa caggcagcac acagacaaca ccgccgccgc aaacgccagc agcacatatt
     3301 ccccgaccga ctgcggcggc gacggcatca caggggaaac cgccttatcc gaaaccgcgc
     3361 acctgccgaa ccacgcatac agcaaccctg ccgccgccgt tacccccaac accagccaca
     3421 ccagcaccga agcaaccgcc atatcgagtt caaacatgac caactggtaa atttccactt
     3481 cgaccgtggc ataacggctg ccgcccagca gcaatgccag cccgaacccc gaaaaacaat
     3541 acaggaagac aaggcacacg ccgccggcaa gccacgggcg caaaacgggc atttcaatgt
     3601 cccaaaaccg ccgccacgcc cccgcgccca acgtccgtgc cgtctgaagc cgtgccgcag
     3661 gcacttgcac aaacccctga tacgccgccc tgaccaacac aggaaggttg aaaaacacat
     3721 tgccgtacaa caacagatac ggcgtatcct gccgtccgcg ccacaacagg ccgtccgccc
     3781 cgaacagagc cagcacgccc acgcccgcca ccaacgtggg catcacaaaa ggcagcatca
     3841 gcaggcgcag caccaaagcc cgccccggaa acgccagccg cgccagcacc cacgcgacag
     3901 gcacgcccaa aggcagcacc agcacacagg ttgccgctgc ctgaaatacc gtccacgcca
     3961 aacgtttgag catataggca tccgacagca ccgcgcgcca cgccaaaccg tcatacgccg
     4021 ccaccgccca caaaggcgca acgaccatta ccgccaaaaa agccgaaggc agcagggcaa
     4081 aagcacccca taccgcccaa cgccgtccat ccatcgcctt ccccacttga aacactgatg
     4141 ttgcgattgt acccaaaagc ccccacatac cgtatatttc aatccgacta cataccgtat
     4201 ccgccttcct cccgccgtct gaaataaatc gttcaaataa acaggaatat aacttcagac
     4261 aaacaactta ccgcccgatt tgtgctatcg ttttcgcaca acttaaaaaa acctgacaat
     4321 tttgtacttt tattacagag aaaggcttta caaatggacg gctggacaca gacgctgtcc
     4381 gcgcaaaccc tgttgggcat ttcggcggcg gcaatcatcc tcattctgat tttaatcgtc
     4441 aaattccgca tccacgcgct gctgacactg gtcatcgtca gcctgctgac ggctttggca
     4501 accggtttgc ccacaggcag cattgtcaac gacgtactgg tcaaaaactt cggcggcacg
     4561 ctcggcggcg tggcgctttt ggtcggtctg ggcgcgatgc tcggacgttt ggtcgaaaca
     4621 tctggcggcg cacagtcgct ggcggacgcg ctgatccgga tgttcggcga aaaacgcgca
     4681 ccgttcgcgc tgggcgttgc ctcgctgatt ttcggcttcc cgattttctt cgatgccgga
     4741 ctaatcgtca tgctgcccat cgtgttcgcc accgcacggc gcatgaaaca ggacgtactg
     4801 cccttcgcgc ttgcctccat cggcgcattt tccgtcatgc acgtcttcct gccgccccat
     4861 ccgggcccga ttgccgcttc cgaattttac ggcgcgaaca tcggccaagt tttgattttg
     4921 ggtctgccga ccgccttcat cacatggtat ttcagcggct atatgctcgg caaagtgttg
     4981 gggcgcacca tccatgttcc cgttcccgaa ctgctcagcg gcggcacgca agacaacgac
     5041 ctgccgaaag aacctgccaa agcaggaacg gtcgtcgcca tcatgctgat tcccatgctg
     5101 ctgattttcc tgaataccgg cgtatcggcc ctcatcagcg aaaaactcgt aagtgcggac
     5161 gaaacctggg ttcagacggc aaaaataatc ggttcgacac cgatcgccct tctgatttcc
     5221 gtattggtcg cactgtttgt cttgggacgc aaacgcggcg aaagcggcag cgcgttggaa
     5281 aaaaccgtgg acggcgcact cgcccccgtc tgttccgtga ttctgattac cggcgcgggc
     5341 ggtatgttcg gcggcgtttt gcgcgcttcc ggcatcggca aggcactcgc cgacagcatg
     5401 gcggatttgg gcattcccgt ccttttgggc tgtttccttg tcgccttggc actgcgtatc
     5461 gcgcaaggtt cggcaaccgt cgccctgacc accgccgccg cgctgatggc tcctgccgtt
     5521 accgccgccg gctttaccga ctggcagctc gcctgtatcg tattggcaac ggcggcaggt
     5581 tcggtcggtt gcagccactt caacgactcc ggcttctggc tggtcggccg cctcttggac
     5641 atggacgtac cgaccacgct gaaaacctgg acggtcaacc aaaccctcat cgcactcatc
     5701 ggctttgcct tgtccgcact gctgttcgcc atcgtctgac agacggaaag gatagtaaat
     5761 gactacgcat tttgtcgtta tgggcgtatg cggctgcggc aagaccaccg ccgcgctgtc
     5821 cctgcagaaa cacctcggtc aatgtcccca tgccgaaggc gacgagttcc acacccaagc
     5881 caaccgcgac aagatgggcg cgggtattcc gctgaccgat gaagaccgct atccgtggtt
     5941 gggcaatctg cgcgactgga tgacgcaaca ggcgcaaaac ggtgcgaacc acaccatcgt
     6001 aacctgttcc gccctcaaac gcggctaccg cgacattctg cgcggagccg aaggcaaagc
     6061 tgccttcatc cacctcagtc cgccgcaaga catcaacctc gagcgcatga tgtcgcgcaa
     6121 aggacattac atgaaagcag ggatgctcga ttcgcaactg gaaatcctcg aggaactggg
     6181 cgaaggcgaa tacggggtca aaatcgccaa ccccggcacg cccgaagcgg tcgaagccga
     6241 tattctgaac tgggttgcct cggaaaacct gctttgaagc aatatgccgt ctgaagcccg
     6301 acacaggatg ggtttcagac ggcataaaca tcgggaacag aatggattac a
//
LOCUS       DAWGNT010000114         6301 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.114, whole genome shotgun sequence.
ACCESSION   DAWGNT010000114 DAWGNT010000000
VERSION     DAWGNT010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6301
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.114"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(323..528)
                     /locus_tag="WHR98_001487"
                     /pseudo
     CDS             complement(323..528)
                     /locus_tag="WHR98_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003694731.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(534..2570)
                     /locus_tag="WHR98_001488"
     CDS             complement(534..2570)
                     /locus_tag="WHR98_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019270417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEZ2308153.1"
                     /translation="MTDNALLHLGEEPRFDQIKTEDIKPALQTAIAEAREQIAAIKAQ
                     THTGWANTVEPLTGITERVGRIWGVVSHLNSVADTPELRAAYNELMPEITAFFTEIGQ
                     DIALYNRFKTIKNSPEFATLSTAQKTKLNHDLRDFVLSGAELPPEQQAELAKLQTEGA
                     QLSAKFSQNVLDATDAFGIYFDDAAPLAGIPEDALAMFAAAAQSEGKTGYKIGLQIPH
                     YLAVIQYADNRELREQIYRAYVTRASELSDGGKFDNTANIDRTLANALQTAKLLGFKN
                     YAELSLATKMADTPEQVLNFLHDLARRAKPYAEKDLAEVKAFARESLGLADLQPWDLG
                     YAGEKLREAKYAFSETEVKKYFPVGKVLNGLFAQIKKLYGIGFTEKTVPVWHKDVRYF
                     ELQQNGETIGGVYMDLYAREGKRGGAWMNDYKGRRRFSDGTLQLPTAYLVCNFAPPVG
                     GREARLSHDEILILFHETGHGLHHLLTQVDELGVSGINGVEWDAVELPSQFMENFVWE
                     YDVLAQMSAHEETGVPLPKELFDKMLAAKNFQRGMFLVRQMEFALFDMMIYSEDDEGR
                     LKNWQQVLDSVRKEVAVIQPPEYNRFALSFGHIFAGGYSAGYYSYAWAEVLSADAYAA
                     FEESDDVAATGKRFWQEILAVGGSRSAAESFKAFRGREPRIDALLRHSGFDNAA"
     gene            complement(2658..3530)
                     /locus_tag="WHR98_001489"
     CDS             complement(2658..3530)
                     /locus_tag="WHR98_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEZ2308154.1"
                     /translation="MEIWNMLDTWLGAVPIRAEAVESVAAVAALLLARALLLNIHFKR
                     HPDFGIESKRRFLVASRNITLLLVLFSLAFIWSAQIQTLALSMFAVAAAVVVATKELI
                     MCLSGSILRSATQQYSVGDYIEINGLRGRVVDINLLNTLMMQVGPNPLVGQLAGTTVS
                     FPNSLLLSHPVRRDNILGDYVIHTVEIPVPIHLDSDEAVCRLKAVLEPLCAPYIPAIQ
                     RHLENVQAEKLFITPAARPRVTRVPYDDKAYRIIVRFASPVSKRLEIQQAVMDEFLRV
                     QYRLLNYPAGSETL"
     gene            3800..6190
                     /gene="gyrB"
                     /locus_tag="WHR98_001490"
     CDS             3800..6190
                     /gene="gyrB"
                     /locus_tag="WHR98_001490"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEZ2308155.1"
                     /translation="MTEQKHEEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMV
                     FEVLDNAIDEALAGHCDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVL
                     HAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNV
                     VGDSDKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGKHES
                     FALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNI
                     PQRDGGTHLTALRQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPK
                     FSSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAR
                     EITRRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLK
                     GKILNVEKARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAH
                     IRTLLLTFFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEK
                     AKIISDGRTIEGAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPVDLSTAESA
                     DRSVAELNGLLDEKEVALERIEGHEGHRFIKITRKLHGNVMVSYIEPKFLNSKAYQTL
                     TQTAAALKGMVGEGAKLYKGENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPE
                     QLWETTMDPAVRRLLKVRIEDAIAADEVFVTLMGDEVEPRRAFIENNALIAQNIDA"
BASE COUNT         1462 a         1663 c         1778 g         1398 t
ORIGIN      
        1 cctgattttt gttaatccac tataaaatgc cgtctgaagc gttgtttgac cgtttcagac
       61 ggcattttta tcaaattcaa aaatattccg tcattcccgc gaaagcggga atctagaacg
      121 taaaatctaa agaaaccgtt ttatccgata agtttccgca ccgacagacc tggattcccg
      181 cctgcgcggg aatgacggga tttctgtttt tgattttttt gtttttgggg aatgacagga
      241 tttgagattg cgggcattta tcaggtaaaa cggaaattaa acgttgcgaa aatttatccg
      301 aaatcacagc aacttttccg cgtcattccc acgaaagtgg gaatctagga cttaggaccg
      361 gagaaacctt tttacccgat aagtttccgt gccgaccggt ctggattccc gcctacgcgg
      421 gaatgacggg attttggctt actgtttttg tgaaaatggc gaaaccgcgc aaatgctgat
      481 gccgtctgaa acactgtttg attgtttcag acggcatttt ttgttcacat cgatcaagcc
      541 gcgttgtcga aaccgctgtg gcgcaagagt gcgtctatgc gcggttcgcg tccgcggaag
      601 gctttgaagg attctgccgc gctgcgcgat ccgccgacgg cgaggatttc ctgccaaaag
      661 cgtttgcctg tggcggcgac atcgtcgctt tcttcaaagg cggcgtatgc gtccgcgctc
      721 aatacttccg cccacgcgta gctgtaatag cctgcggaat agccgcctgc gaagatgtgg
      781 ccgaagctca aggcgaagcg gttgtattcg ggcggttgga tgacggcgac ttctttgcgc
      841 acgctgtcta aaacctgttg ccagtttttc agacggcctt cgtcgtcttc gctgtaaatc
      901 atcatatcaa agagggcgaa ctccatttgc cggacgagga acatgccgcg ttggaagttt
      961 ttggcggcga gcattttgtc gaagagttct ttcggcaggg gaacgccggt ttcttcgtgg
     1021 gcggacattt gtgccaagac gtcgtattcc cagacgaaat tttccataaa ctggctgggc
     1081 agttcgactg cgtcccattc tacgccgttg atgccggata cgcccagttc gtccacttgg
     1141 gtaagcaggt ggtgcagccc gtgtccggtt tcgtggaaga ggatgaggat ttcgtcgtgg
     1201 ctcaaacgcg cttctctgcc gccgacgggc ggggcgaagt tgcagacgag gtaggcggtg
     1261 ggcagttgca gcgtgccgtc tgaaaaacgg cggcgacctt tgtagtcgtt catccacgcg
     1321 ccgccgcgtt tgccttcgcg tgcgtacaaa tccatataaa cgccgcctat ggtttcgccg
     1381 ttttgttgca attcaaaata gcgcacgtct ttgtgccaga cggggacggt tttttcggta
     1441 aatccgatgc cgtagagttt tttgatttgg gcgaacagtc cgtttaatac tttgccgacg
     1501 gggaagtatt ttttgacttc ggtttcgctg aatgcgtatt tggcttcgcg cagtttttcg
     1561 ccggcgtagc ccaagtccca cggttgcaaa tcggcgagac cgaggctttc gcgggcgaag
     1621 gctttgactt cggcgaggtc tttttcggcg tagggtttgg cgcggcgggc aaggtcgtgc
     1681 aggaagttta aaacttgttc gggggtgtcc gccattttgg ttgccagcga caattcggcg
     1741 tagtttttga agccgagcag tttggcggtt tgcagggcgt ttgcgagcgt gcggtcgatg
     1801 ttggcggtgt tgtcgaattt gccgccgtct gacagttcgc tggcgcgggt aacgtaggcg
     1861 cggtagattt gttcgcgcag ttcgcggttg tcggcgtatt ggatgacggc gaggtagtgc
     1921 ggaatctgca aaccgatttt gtagcctgtt ttgccttcgc tttgcgcggc agcggcaaac
     1981 atggcgagcg cgtcttcggg aatgccggca agcggtgcgg catcgtcaaa gtaaatgccg
     2041 aacgcgtcgg tcgcgtctag gacgttttgg gagaatttgg cggaaagttg cgcgccttcg
     2101 gtttgcagtt ttgccagttc tgcctgctgt tcgggcggca gttccgcgcc gctgaggacg
     2161 aaatcgcgca ggtcgtggtt gagcttggtt ttttgtgcgg tggaaagcgt tgcaaattcg
     2221 ggggagtttt tgatggtttt gaagcggttg tataaggcaa tatcttgtcc gatttcggta
     2281 aagaaggcgg tgatttcggg cattaattca ttgtaggcgg cgcgcagttc gggcgtgtcg
     2341 gcgacggagt tgaggtgcga caccacgccc caaatcctgc cgacgcgttc ggtgatgccg
     2401 gtcaggggtt cgacagtgtt tgcccagccg gtgtgcgttt gggctttgat ggcggcgatt
     2461 tgttcgcgcg cttcggcgat ggcggtttgc agggcgggtt tgatgtcttc ggttttgatt
     2521 tgatcaaaac ggggttcttc gcccaaatgg agcagtgcgt tgtcagtcat aagatgggtt
     2581 tcctttgcgt gttgtgcttc agacagcata tcggcaatat gccgtctgaa gccggaaatg
     2641 gggtcggtca gggaaagtta aagtgtttcg gagccggcgg ggtaatttaa caggcggtat
     2701 tgtacgcgca aaaattcgtc cataaccgcc tgttggattt ccagccgctt tgaaacgggg
     2761 gaggcgaagc ggacgatgat gcggtatgcc ttgtcatcgt acggcacgcg ggtaacgcgc
     2821 ggtctggcgg cgggcgtgat aaacagtttt tccgcctgca cgttttccaa atgccgttgg
     2881 atggcgggga tgtagggcgc gcacaagggc tcgagtacgg ctttcagacg gcatacggct
     2941 tcatccgaat ccaaatggat gggaacgggg atttcgaccg tatggatgac atagtcgccc
     3001 aaaatattgt cgcggcgcac ggggtggctc aacaacaggc tgttggggaa agaaacggtg
     3061 gttcccgcaa gctgtccgac caaggggttc ggaccgacct gcatcatcag cgtgttcaac
     3121 aggttgatgt cgaccacgcg cccgcgcagg ccgttgattt cgatatagtc gccgaccgag
     3181 tattgctggg tggcagacct taaaatactg cccgacagac acataatcag ttccttcgtc
     3241 gccacgacga ccgccgccgc caccgcaaac atcgacaaag ccagcgtttg gatttgcgcc
     3301 gaccagataa atgccagcga aaacagcacc aaaagcagcg ttatattgcg gctggcaacc
     3361 aaaaaccgcc gcttgctttc gatgccgaaa tccggatgcc gtttgaagtg gatattcaac
     3421 agaagggcgc gcgccagcag caaagccgca accgccgcca cggattcgac cgcctccgca
     3481 cgtatcggga cggcaccgag ccaagtgtcc aacatattcc atatttccat ttccgcgccc
     3541 ctgtccgaaa agtatagggt gtagatttta gtggcaaaaa aacgcttttg ccactttacg
     3601 ggaaaatccc cgacctgatg ccggaggcaa acgtaccgtt tcatcttttc ccggcggcac
     3661 actgatgcgg ataacgctga attaggcggc aaaatcggct ataatacaca attatatatg
     3721 ccgtcccgcc cgctttttcc acaaggtgcg gacttgtttt ggcggcatcg caaaatcttt
     3781 tcaaaatccg gcaaaaaata tgactgaaca aaaacacgaa gaatacggcg ccgacagcat
     3841 tcaggtgctc gaaggcttgg aagcggtacg caaacgcccc ggcatgtaca tcggcgacac
     3901 gcaggacggc agcggtctgc accatatggt gtttgaagta ttggacaacg ccattgacga
     3961 agcactcgcc ggacattgcg acaaaatcac ggtaacgata cacgccgacc attccgtcag
     4021 cgtcgccgac aacgggcgcg gtatgcccac cggcatccac ccgaaagaag gacgctccgc
     4081 cgccgaagtc atcatgaccg tattgcacgc gggcggtaaa ttcgacaaca acagctacaa
     4141 aatctccggc ggcctgcacg gcgtgggcgt gtccgtcgtc aacgcgctgt ccgactgggt
     4201 aacgctgacc atctaccgcg acggcaaaga acacttcgtc cgcttcgtgc gcggcgaaac
     4261 cgaagagccg ctgaacgttg tcggcgattc cgataaaaaa ggcacgaccg tgcgcttcct
     4321 cgccagtacg gaaaccttcg gcaacgtcga atacagcttc gacatccttg ccaaacgcat
     4381 ccgcgaactt tccttcctga acaacggcgt ggacatcgaa ttgaccgacg agcgcgacgg
     4441 caaacacgaa agcttcgccc tttccggcgg cgtggctgga ttcgtgcaat acatgaaccg
     4501 caaaaaaacg cccttgcacg aaaaaatctt ctacgcgttc ggcgagaaag acggcatgag
     4561 cgtcgaatgc gcgatgcaat ggaacgacag ctatcaggaa agcgtgcaat gttttaccaa
     4621 caacattccg caacgtgacg gcggtacgca cttgaccgcg ctgcgccaag tgatgacccg
     4681 caccatcaac aactatatcg aagccaacga agtggccaaa aaagccaaag tggaaaccgc
     4741 cggcgacgat atgcgtgaag gtttgacctg cgtgttgtcc gtcaaactgc ccgaccccaa
     4801 attttcgtcc caaaccaaag acaaactggt ttccggcgaa atcggtcccg tcgtcaacga
     4861 agtcatcagc caagccctga ccgacttcct cgaagaaaac cctgccgaag ccaaaatcat
     4921 caccggcaaa atcgtcgatg ccgcccgcgc gcgcgaagcc gcccgcaaag cccgcgaaat
     4981 cacccgccgc aaaggcgtaa tggacggctt ggggctaccc ggcaaactcg ccgactgcca
     5041 agaaaaagac cccgcattgt cagaacttta tttggtcgag ggcgattctg caggcggttc
     5101 cgccatgcag gggcgcgacc gcaaattcca agcgattttg ccgcttaagg gcaagatttt
     5161 gaacgtcgaa aaagcgcgct ttgaaaaaat gctcgccagt caggaagtag ccgctttgat
     5221 taccgcgttg ggcgcgggca tcggcaaaga agaattcaat gccgagaagc tgcgttacca
     5281 ccgcatcatt atcatgaccg atgccgatgt ggacggtgcg catatccgca ccttgctttt
     5341 gaccttcttc taccgccaaa tgcccgaact ggtcgagcgc ggctacatct atatcgccca
     5401 gccgcctttg tacaaagcca aatacggcaa acaagaacga tatctcaaag acgaattgga
     5461 aaaagaccaa tggctgctcg gtttagcctt ggaaaaagcc aaaatcattt cagacggccg
     5521 caccatcgaa ggcgcagaac ttgccgacac cgccaaacaa ttcctgttgg caaaaaccgt
     5581 catcgaacag gaaagccgct tcgtagacga actcgtcctg cgcgccatgc tacatgcttc
     5641 gccggtcgat ctcagcacag cagaaagcgc agaccgctcc gttgccgaat tgaacggcct
     5701 cttggacgaa aaagaagtcg cgctcgaacg tatcgaaggc cacgaaggac accggttcat
     5761 caaaatcacg cgcaagctgc acggcaacgt catggtcagc tacatcgaac ccaagttcct
     5821 caacagcaaa gcctaccaaa ccctcaccca aaccgccgcc gcgctcaaag gcatggtcgg
     5881 cgagggtgcc aagctttaca aaggcgaaaa cgggtacgac gcggacagct ttgaaaccgc
     5941 tttggacatc ttaatgagcg ttgcccaaaa aggtatgtcc atccaacgat acaaaggctt
     6001 gggcgagatg aaccccgaac agctgtggga aaccacgatg gatcccgccg tgcgccgcct
     6061 gttgaaagtg cgcatcgaag atgccattgc cgccgacgaa gtattcgtta ccctgatggg
     6121 cgacgaggtc gaaccgcgcc gcgcctttat cgaaaacaac gcgctgattg cccaaaatat
     6181 cgacgcataa gtgccgtttt aaaaaaggag acgggcatcg tgccgcgtct ccttttggtt
     6241 tgtcaaacgg aagccatgcc gtctgaaacc gcctttcgga gcaaaaccat ggtcagcatt
     6301 t
//
LOCUS       DAWGNT010000115         6259 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.115, whole genome shotgun sequence.
ACCESSION   DAWGNT010000115 DAWGNT010000000
VERSION     DAWGNT010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6259
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.115"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(93..653)
                     /locus_tag="WHR98_001491"
     CDS             complement(93..653)
                     /locus_tag="WHR98_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase family protein"
                     /protein_id="HEZ2308156.1"
                     /translation="MNMKTLLALAVSAVCSVSVAQAHEHNTIPKGASIEVKVQQLDPV
                     NGNKDVGTVTITESNYGLVFTPDLQGLSEGLHGFHIHENPSCEPKEKEGKLTAGLGAG
                     GHWDPKGAKQHGYPWQDDAHLGDLPALTVLHDGTATNPVLAPRLKHLDDVRGHSIMIH
                     TGGDNHSDHPAPLGGGGPRMACGVIK"
     gene            complement(1070..2110)
                     /gene="mutY"
                     /locus_tag="WHR98_001492"
     CDS             complement(1070..2110)
                     /gene="mutY"
                     /locus_tag="WHR98_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEZ2308157.1"
                     /translation="MNTPIPFSERLIRWQKQHGRHHLPWQVKNPYCVWLSEIMLQQTQ
                     VATVLDYYPRFLEKFPTVQTLAAAPQDEVLSLWAGLGYYSRARNLHKAAQQVVRQFGG
                     TFPSERKDLETLCGVGRSTAAAICAFSFNRRETILDGNVKRVLCRVFARDGNPQDKKF
                     ENSLWTLAESLLPSENADMPAYTQGLMDLGATVCKRTKPLCHQCPMADICEAKKQNRT
                     AELPRKKTAAEVPTLPLYWLIVRNRDGAILLEKRPAKGIWGGLYCVPCFESLNGLSDF
                     AAKFSLTMADMDEQTALTHRLTHQLLMITPFEGQMPSESPSDGIWIKPAHLKDYGLPK
                     PLEIYLNGNRLE"
     gene            2273..3217
                     /locus_tag="WHR98_001493"
                     /pseudo
     CDS             2273..3217
                     /locus_tag="WHR98_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225132.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
     gene            complement(3229..3459)
                     /locus_tag="WHR98_001494"
     CDS             complement(3229..3459)
                     /locus_tag="WHR98_001494"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308158.1"
                     /translation="MPSEKPFPFQTAFCRLRAQSAYTAALIRHTAPKMPIRLPHNKNN
                     VQFIRQQPDSPFYAAEKMPSETHSDGIRLKNN"
     gene            complement(3474..4112)
                     /locus_tag="WHR98_001495"
     CDS             complement(3474..4112)
                     /locus_tag="WHR98_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEZ2308159.1"
                     /translation="MSKLTPREILSAGAVVPVMAIDDLSTAVDLSHALVEGGIPTLEI
                     TLRTPVGLDAIRLIAKEVPNAIVGAGTVTNPEQLKAVEDAGAVFAISPGLHESLAKAS
                     HNSGIPLIPGVATPGEVQLALEHGIDTLKLFPAEVVGGKAMLKALYGPYADVRFCPTG
                     GISLATAPDYLALPNVLCVGGSWLTPKEAVKNKDWDTITRLAKEAAALKPKA"
     gene            complement(4293..6128)
                     /gene="edd"
                     /locus_tag="WHR98_001496"
     CDS             complement(4293..6128)
                     /gene="edd"
                     /locus_tag="WHR98_001496"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HEZ2308160.1"
                     /translation="MNTTPIHSKLAEITGRIIERSRPTREKYLAKIRSAKQMGRLERN
                     QLGCSNLAHGYAAMPKSIKIEMLQETVPNLGIITAYNDMVSAHQPFKDFPDQIKDEAQ
                     KNGATAQVAGGTPAMCDGITQGYAGMELSLFSRDVIAMSTAVGLSHQMFDGSLFMGVC
                     DKIVPGLMIGALSFGHIPGIFVPAGPMSSGIGNKEKARTRQLFAEGKVGRNELLKSEM
                     GSYHSPGTCTFYGTANSNQMMMEMMGVHLPAAAFVHPYTDLREALTRYAAGHLARGIK
                     NGTIKPLGEMLTEKSFINALIGLMATGGSTNHTMHLVAMARAAGVILNWDDFDEISSI
                     IPLLIRVYPNGKADVNHFTAAGGLPFVIRELLNAGLLHDDVDTVVGHGMRHYTKEPFL
                     IDGKLEWREAPETSGNDDILRKAGNPFSPDGGLRLMKGNIGRGVIKVSAVREGCRIIE
                     APAIVFNDQREVLAAFERGELERDFVCVVRYQGPRANGMPELHKLTPPLGILQDRGFK
                     VALLTDGRMSGASGKVPASIHMTPEALMGGNIAKIRTGDLIRFDSVSGELNVLINETE
                     WNAREVESIDLGANQQGCGRELFANFRSMTSSAETGAMSFGGEFA"
BASE COUNT         1398 a         1497 c         1752 g         1612 t
ORIGIN      
        1 cactatactg ctgaagtcgt gaattaaatg ctaaatatct agcaaaaaag tgcggtcaaa
       61 attcaccgca cttttcgttt cgaacaatcg aattatttaa tcacgccaca tgccatacgt
      121 gggccgccac cgccaagtgg agctggatga tcggagtgat tatcaccacc cgtgtggatc
      181 ataatagagt gaccgcgaac atcatctaaa tgtttaagac gtggtgctaa aacaggattt
      241 gttgctgtgc catcatgcaa tacagttaat gcaggtaaat cacctaagtg tgcatcatct
      301 tgccatgggt aaccatgttg ttttgcacct ttaggatccc agtgaccgcc tgcgcctaaa
      361 ccagctgtca atttaccttc tttttctttt ggctcacagc ttgggttttc atggatgtgg
      421 aaaccatgta agccttcgct taatccttgt aaatcagggg taaacacaag accatagtta
      481 gattcagtaa tagtcactgt acccacatct ttgttaccgt ttactggatc aagttgttgc
      541 actttcactt caatagaagc acctttaggt atcgtattat gctcgtgtgc ttgcgcaaca
      601 ctaactgaac atactgcact aaccgctagt gctaataagg ttttcatatt cattgcaatc
      661 tcctttattg cagtaaaaac tcgcgactat tttagtcaat tttgttttaa aagccgataa
      721 atttttacga aaattttaca ttaattgtta tttgcagaaa attagaaccc gttatcacgt
      781 cttggataaa tgccaaaacc attgtgattc cgagaattaa aaagaaaaat ttcggaatcc
      841 tcatcctttt ctgaaacctg attgcggtat ccatggcttt gtctttgtca tttaagtttg
      901 tgttcatgtt tttgaccttc tttgcttttt aaatcctttt taaattgccg acttcttccg
      961 ttccaaatgt cccatttgaa cattatcccg ccgcctaaaa tacgacccaa attcatcggt
     1021 tgttcttgct gcgatacctg caaacaacag ttcaatgggt ttattttgtt tattctaacc
     1081 tattaccgtt taaataaatt tccaaaggct tgggcaaacc gtaatctttc aaatgcgccg
     1141 gctttatcca aatgccgtct gaagggcttt cagacggcat ttgtccttca aacggcgtaa
     1201 tcatcagcag ctggtgcgtc aggcggtggg tcagggcggt ttgttcgtcc atatctgcca
     1261 tggtcaggga gaatttggcg gcaaagtcgg aaagcccgtt caaactttca aaacacggca
     1321 cgcaatacag cccgccccaa atgcctttgg cggggcgttt ttccagcaaa atcgcgccgt
     1381 cccggttgcg gacaatcagc cagtaaagcg gcagggtcgg tacttcggcg gcggtttttt
     1441 tgcgcggcag ctcggcggtg cggttttgct tttttgcttc gcagatgtcc gccatcgggc
     1501 attggtggca caagggtttc gtccgtttgc acacggtcgc gcccaaatcc atcaaacctt
     1561 gtgtataggc aggcatatcg gcgttttcag acggcagcag gctttcggca agtgtccaga
     1621 gcgagttttc aaattttttg tcctgcggat tgccgtcgcg ggcgaacacg cggcagagta
     1681 cgcgtttgac gttgccgtcc aaaatggttt cgcggcggtt gaaggagaag gcgcaaatgg
     1741 cggcggcggt gcttctgcct acgccgcaga gcgtttccaa gtctttgcgt tccgatggaa
     1801 acgtgccgcc gaattgcctg acgacttgtt gcgcggcttt gtgcaggttg cgcgcgcggc
     1861 tgtaatagcc caagcccgcc cacaacgaca acacttcgtc ttgcggcgcg gcggcaagcg
     1921 tctgaacggt cgggaatttt tctaagaaac gcggatagta gtccaacacg gtggcgacct
     1981 gcgtttgctg gagcatgatt tcggaaagcc agacgcaata agggtttttg acctgccaag
     2041 ggaggtggtg gcgaccgtgt tgtttttgcc agcggatgag ccgttcggag aaggggatgg
     2101 gtgtgttcat taatatcaat cggtggtttt atttatattt aaaacagtat gttattgtat
     2161 aacattgtga aaataattct tattgactta ttttttgtag gggcatataa ctcatataaa
     2221 gaaactttat tgcggtattg aaattattta tcaacaagca aggagtatca gcatgaaagc
     2281 aatggtttat cacggcgcaa acgacatccg ttttgaagaa aaacccgtcc gcagattatc
     2341 gatccgaccg atgcggtggt gaaaatcgtc aaaaccacga tttgcggtac cgatttgggt
     2401 atttggaaag gcaaaaaaac ccgaagtcgc cgacggtcgt attctcggtc atgaaggcat
     2461 cggtattgta gaagaagtcg gcgaggctgt aaaaaacatc aaagtcggcg ataaagtcat
     2521 tatttcatgc gtcagcaaat gctgtacttg cgacaactgc aaaatccaac tttattcgca
     2581 ttgccgcaac ggcggctgga ttttgggcta catgattgac ggcacgcagg cagaatacgt
     2641 ccgcacgcct tatgccgaca acagcctcgt gccgctgccc gacaacgtca acgaagaagt
     2701 cgccctgttg ttgagcgatg ccttgccgac cgcccaactg tacagccccg ccgccatcat
     2761 tgtttgcgat atggacgaaa accgtttgaa actggcgaaa gagttgggcg caacccatac
     2821 cattaaccct gcttccggcg atgtaagcaa gcaagttgcc gctatcgtcg gcgaagacgg
     2881 cgtggactgc gcgatcgaag ccgtcggtat ccctgcaact tggaatatgt gccaagacat
     2941 tgtgaaaccc ggcggccata tcgccgttgt cggcgtacac ggtcaatccg ttgatttcaa
     3001 actggaaaaa ctgtggatta aaaagcttgc catcactacc ggcatggtaa acgccaatac
     3061 caccgaaatg ctgatgaagg caatttccag cagctccgtc gattacacca aaatgttgac
     3121 ccaccgtttc aaattcagcg aattggaaaa agcctacgac gtgttcaaac acgccgccga
     3181 aaatcaagcg atgaaagtgg ttttggaagc ggattaatcg gcgttgaatc agttgttttt
     3241 taagcggatg ccgtctgaat gcgtttcaga cggcattttt tcagctgcgt aaaacgggct
     3301 gtccggctgc tgtcgaatga actgaacgtt atttttatta tgcggaaggc ggatgggcat
     3361 tttaggggcg gtatgtctga tcagtgctgc cgtgtatgcc gactgtgccc tcaatcggca
     3421 aaatgccgtc tgaaacggga aaggtttttc agacggcatt tttacgatgc ggttcaggct
     3481 ttgggtttta acgccgccgc ttctttggcg aggcgggtga tggtgtccca gtctttgttt
     3541 ttcacagctt ctttcggggt cagccaagag ccgccgacgc acaagacgtt gggcagtgcc
     3601 aggtaatcgg gtgcggtggc gaggctgatg ccgccggtcg ggcagaagcg cacgtcggca
     3661 taaggaccgt aaagggcttt gagcatggct ttgccgccga cgacttcggc ggggaaaagt
     3721 ttgagggtgt cgatgccgtg ttccaaagcc agttggactt cgcccggagt ggcaacgccg
     3781 ggaatcaggg ggatgccgct gttgtggctg gctttggcga gggattcgtg caaacccggg
     3841 ctgatggcga aaaccgcgcc tgcgtcttcg acggctttga gctgttcggg gttggtaacc
     3901 gtacctgcgc cgacgatggc gttgggtact tctttggcaa tcaggcggat ggcgtcgagg
     3961 ccgacggggg tgcgcagggt aatttcgagg gtggggatgc cgccttcgac aagggcgtgg
     4021 gacaaatcga cagcggtgct caagtcgtca atcgccatca caggcacaac tgcgcctgcg
     4081 ctcaggattt cgcggggggt cagtttggac atttcggttc tccgggtgga atggggtatt
     4141 ttattaagat gggacaggtc gtaggtcgga ttcaagaaac cgacatcttg gacggctgtg
     4201 tcggattcga gaatccaacc tacgtctatc ttaaaacact tgaataattt ttcagacggc
     4261 cttcggtctg aaaaggccgt ctgaaacgcg catcaggcaa attcgccgcc gaaactcatg
     4321 gcaccggttt ccgcgctgct ggtcatgctg cggaagttgg cgaagagttc gcggccgcag
     4381 ccttgttggt tcgcgcccaa gtcgatgctt tcgacttcgc gggcattcca ttcggtttcg
     4441 ttaatcagga cgttgagttc gccgctaacg gagtcgaagc ggatcaggtc gccggtacgg
     4501 attttggcga tgttgccgcc catcagggct tcgggtgtca tgtggatgga ggctggaact
     4561 ttaccggatg cgccggacat acgaccgtcg gtcagcagtg ccactttgaa gccgcggtct
     4621 tgcaggatgc ccaaaggcgg ggtcagtttg tgcaattcgg gcataccgtt ggcacgcggg
     4681 ccttggtagc ggacgacgca gacgaaatcg cgttccaact cgccgcgttc aaatgccgcc
     4741 aacacttcgc gttggtcgtt gaacacgatg gcaggcgctt caataatgcg gcagccttcg
     4801 cgcacggcgg acactttaat cacgccgcgt ccgatgttgc ctttcatcag gcgcagaccg
     4861 ccgtcggggg agaacgggtt gccggctttg cgcaggatgt cgtcgttgcc gctggtttcg
     4921 ggggcttcgc gccattcgag tttgccgtcg ataaggaaag gctctttggt gtagtggcgc
     4981 ataccgtgtc cgacgacggt atcgacatcg tcgtgcaaca ggcctgcatt cagcaattcg
     5041 cggataacga aaggcagtcc gcccgctgcg gtaaagtgat tcacgtcggc cttgccgttc
     5101 ggataaacgc ggatgagcag cgggatgatg gaggaaattt cgtcgaagtc gtcccagttc
     5161 aaaatcacgc cggccgcacg cgccatagcg acgaggtgca tggtgtggtt ggtcgaaccg
     5221 ccggttgcca tcaggccaat caaggcgttg ataaaggatt tttcggtcaa catttcgccc
     5281 aaaggtttaa tcgtgccgtt tttgatgccg cgcgcgaggt gtccggcggc gtagcgggtc
     5341 agcgcttcgc gcaggtcggt gtaagggtgg acgaaggcgg cggcaggcag gtgcacgccc
     5401 atcatttcca tcatcatttg gttggagttt gccgtgccgt agaaagtgca ggtgcccggg
     5461 ctgtggtaag aacccatttc gcttttcaaa agttcgttgc gtccgacctt gccttcggcg
     5521 aaaagctggc gggtgcgggc tttttctttg ttgccgatac cgctggacat cgggcctgcg
     5581 gggacgaaga tacccggaat atgaccgaac gaaagcgcgc cgatcatcaa acctggaacg
     5641 attttgtcgc atacgcccat aaacaggctg ccgtcaaaca tttgatgcga cagcccgacg
     5701 gcggtactca tggcaatcac gtcgcgggag aacagcgaca gttccatacc ggcgtagcct
     5761 tgcgtgatgc cgtcgcacat ggcgggtgtg ccgccggcga cttgggcggt cgcgccgttt
     5821 ttctgcgctt cgtctttgat ttggtcaggg aagtctttaa acggctggtg tgcggaaacc
     5881 atgtcgttgt aggcggtgat gatgcctaag ttggggacgg tttcctgaag catttcgatt
     5941 ttgatacttt taggcatggc agcatagccg tgcgccaagt tggagcaacc gagctggttg
     6001 cgctctaagc gtcccatttg tttggcactg cggatcttcg ccagatattt ttcacgcgtc
     6061 ggacggctgc gttcaataat gcgcccggtg atttcggcga gtttggagtg gataggagta
     6121 gtgttcacgg tcggtctcct gtcggaacgg ggggtattgg ggatttgttt gtgcgtttct
     6181 gattttttgt attgggtgtg gggcatttgg cgtttcagac gacctttcaa accttacaag
     6241 gggtcgtctg aaaacctca
//
LOCUS       DAWGNT010000116         6179 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.116, whole genome shotgun sequence.
ACCESSION   DAWGNT010000116 DAWGNT010000000
VERSION     DAWGNT010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6179
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.116"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..201)
                     /locus_tag="WHR98_001497"
     CDS             complement(<1..201)
                     /locus_tag="WHR98_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEZ2308161.1"
                     /translation="MNILLLDGGKAFGHSHGGLNRTLHKKAKEVLTALGHNVQETVID
                     AGYDVEAEIEKFVWMDAVIWQMP"
     gene            440..1339
                     /gene="crgA"
                     /locus_tag="WHR98_001498"
     CDS             440..1339
                     /gene="crgA"
                     /locus_tag="WHR98_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151940473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator CrgA"
                     /protein_id="HEZ2308162.1"
                     /translation="MKTNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEK
                     LGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVHEIPQGVLRVDSAMP
                     MVLHLLAPLATKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLF
                     DSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGNPYKISPHF
                     TASSGEILRSLCLSGCGIACLSDFLVDNDIAEGKLIPLLAEQTSDKTHPFNAVYYSDK
                     AVNLRLRVFLDFLVEELGNNLCG"
     gene            complement(1566..4781)
                     /gene="carB"
                     /locus_tag="WHR98_001499"
     CDS             complement(1566..4781)
                     /gene="carB"
                     /locus_tag="WHR98_001499"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEZ2308163.1"
                     /translation="MPKRTDLKSILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     ILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILPTMGGQTALNCALDL
                     ARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFVCHTMNEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQSVLGWKEYEM
                     EVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAVNPENGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGFKLDE
                     LRNDITGGKTPASFEPSIDYVVTKIPRFAFEKFPAADDRLTTQMKSVGEVMAMGRTIQ
                     ESFQKALRGLETGLCGFNPRSSDKAEIRRELANPGPERMLFVADAFRAGFTLEEIHEI
                     CAIDPWFLAQIEDLMKEEKAVSDGILSDLDFAALRRLKRKGFSDKRLAQLLNVSEKEV
                     REHRYALKLHPVYKRVDTCAAEFATETAYLYSTYEEECESRPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHAALALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RTENPWGVIVHYGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLR
                     QPPNRIAHNEEEALVKAEEIGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSE
                     DSPVLLDFFLNNAIEVDVDCVSDGKDVVIGGIMQHVEQAGIHSGDSGCSLPPYSLSEE
                     IQDEIRRQTKAMAYALGVVGLMNVQFAVQDGVVFVLEVNPRASRTVPFVSKATGVPLA
                     KVGARCMAGISLKEQGVEKEVVPDFYAVKEAVFPFIKFPGVDTILGPEMRSTGEVMGV
                     GASFGEAYYKAQLGAGERLNPTGKIFLSVREEDKERVIKTAKNFQVLGYGICATRGTA
                     QYLTEQGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQ
                     QRVPQYTTTAGGEAMSEGAKSRDHLGVYSVQELHGRLKNRN"
     gene            complement(4788..5336)
                     /locus_tag="WHR98_001500"
     CDS             complement(4788..5336)
                     /locus_tag="WHR98_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308164.1"
                     /translation="MRTIFFSGSRSISRLNPQIRERINNILSNNFDIVIGDANGADKA
                     IQKFLQEQDYANVHIYFSGKIYRNNVGNWQFVQVDSKGTGRVFYTAKDKKMAEIADYG
                     FILWDGKSIGSLNNIAELLQLNKPSLVYHSQTKEFFKIKSSADLENILSNIEDDVLAS
                     ILEKGNTFLKSYVTKQPSLIQE"
     gene            complement(5339..5902)
                     /locus_tag="WHR98_001501"
     CDS             complement(5339..5902)
                     /locus_tag="WHR98_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEZ2308165.1"
                     /translation="MAIELNGNWTKGFALDHHMQKSILLGYDELGHPHFDSKRSVIGE
                     WVYQLKYRNQTQNVSLLVDYILQKFSGLESINLIVPAPFTTERINQPVQLIAKELSDR
                     LNIPYSPILRKSSSHTPLKNIEEKSEKLEILNNSITIDNIDLSNKNILVIDDLFDSGA
                     TLEISTEKLFSKNARSVIVLAMTKTRG"
BASE COUNT         1457 a         1535 c         1516 g         1671 t
ORIGIN      
        1 cggcatctgc caaatcacgg catccatcca aacgaatttt tcgatttctg cctcaacatc
       61 atagccggca tcaatcacgg tttcttgaac attgtgtccg agcgcggtca aaacttcttt
      121 cgcttttttg tgaagcgtgc ggtttaaccc gccgtgagaa tgtccgaacg ccttgccgcc
      181 gtctaataat aaaatattca tttgttacct cgtttgtgaa ttgatgaatg tattgtgccg
      241 ttttacttta taatttaaaa gtgcaaaaat aagaaaacac ttttgcgtca aatgaaataa
      301 tcagatgttt caacacacgg gatgacacat aaagcgtctc cctatgtgcc gtcctgattc
      361 ggaaggggtt acacccctcc caaataaagt ctgatcctgc cgccctaaag ggcggggttc
      421 caaccgaaaa ggaaacacga tgaaaaccaa ttcagaagaa ctgaccgtat ttgttcaagt
      481 ggtggaaagc ggcagcttca gccgtgcggc ggagcagttg gcgatggcaa attctgccgt
      541 aagccgcatc gtcaaacggc tggaggaaaa gttgggtgtg aacctgctca accgcaccac
      601 gcggcaactc agtctgacgg aagaaggcgc gcaatatttc cgccgcgcgc agagaatcct
      661 gcaagaaatg gcagcggcgg aaaccgaaat gctggcagtg cacgaaatac cgcaaggcgt
      721 gttgcgcgtg gattccgcga tgccgatggt gctgcatctg ctggcgccgc tggcaacaaa
      781 attcaacgaa cgctatccgc atatccgact ttcgctcgtt tcttccgaag gctatatcaa
      841 tctgattgaa cgcaaagtcg atattgcctt acgggccgga gaattggacg attccgggct
      901 gcgtgcacgc catctgtttg acagccgctt ccgcgtaatc gccagtcctg aatacctggc
      961 aaaacacggc acgccgcaat ctacagaaga gcttgccggt caccaatgtt taggcttcac
     1021 cgaacccggt tctctaaata catgggcggt tttagatgcg cagggaaatc cctataagat
     1081 ttcaccgcac tttaccgcca gcagcggtga aatcttacgc tcgttgtgcc tttcaggttg
     1141 cggtattgct tgcttatcag attttttggt tgacaacgac atcgctgaag gaaagttaat
     1201 tcccctgctc gccgaacaaa cctccgataa aacacacccc tttaatgctg tttattacag
     1261 cgataaagcc gtcaacctcc gcttgcgcgt atttttggat tttttagtgg aggaactggg
     1321 aaacaatctc tgtggataat tctataaaaa cctgtcataa aattgttttt actcacttaa
     1381 taactttgag aaaaaataaa taagatgatg tatagccggc ggcaatggca gtctatatgg
     1441 ggagcgtgat agggctgttc cttatgtacg gcttgtgtgt ggcaacatcg gctttccaaa
     1501 tgacaaaatg ccgtctgaca ccgtaaaaaa aggtttcaga cggcattttc aacctgattc
     1561 aggcatcagt tgcggttttt caaacgcccg tgcaactctt gaacgctgta cacgcccaga
     1621 tggtctcggc ttttcgcacc ttcgctcatc gcttcgccgc cggcagtggt ggtgtattgc
     1681 ggcacacgtt gctgcaatgc gctttggcgg atgatgtggc tgtcggacac ggattgcgga
     1741 tcgctggaaa cggtattcac gaccagtgcg atttcaccgt ttttcagtgc gtcgccgatg
     1801 tgcgggcggc cttcggggac tttattgatg gtttgtacaa tcagtccctg ttcggtcagg
     1861 tattgcgccg tgccgcgtgt ggcgcagatg ccgtagccta aaacctggaa gtttttagcg
     1921 gttttgataa cgcgttcttt gtcttcttcg cgcacggaga ggaagatttt gccggtcggg
     1981 ttgaggcgtt cgcccgcacc gagttgggct ttgtagtagg cttcgccgaa gcttgcgccc
     2041 acgcccatca cttcgccggt ggagcgcatt tccggtccca aaatcgtgtc tacgcccggg
     2101 aatttgatga atgggaacac ggcttcttta acggcataga aatcggggac aacttctttt
     2161 tccacgcctt gttctttcag ggaaatacct gccatgcagc gtgcgccgac tttggcgagc
     2221 ggcacgccgg tggctttgga gacgaagggc acggtacggc tggcgcgcgg gttcacttcc
     2281 aacacgaaca ccacgccgtc ctgcacggca aactgcacgt tcatcagacc gaccacgccc
     2341 agcgcgtacg ccatcgcttt ggtttggcgg cggatttcgt cttggatttc ttcgcttaag
     2401 gagtagggcg gcagcgagca gccggagtcg ccggagtgga tgcccgcctg ttcgacgtgc
     2461 tgcataatgc cgccgataac cacgtctttg ccgtctgaaa cgcagtccac atcgacttca
     2521 atcgcgttgt tgaggaagaa atcgagcaac acggggctgt cttcggaaac ctgcacggct
     2581 tcgcgcatgt atttttgcaa ggcttcggca gagtggacaa tctgcatggc gcggccgccc
     2641 aaaacataag acgggcgcac gaccagcgga tagccgattt cttcggcttt gacgagtgct
     2701 tcttcttcgt tgtgggcgat gcggttgggc ggttggcgca gacctaagtc gttcaacact
     2761 ttttggaagc gttcgcggtc ttcggcggcg tcgatgctgt cggcggatgt gccgatgatg
     2821 tttacgccgt tttcaaccag cgcgttggcg agtttgagcg gggtttgacc gccgtaatgc
     2881 acaatcacgc cccacgggtt ttcggtgcgg acgatttcca acacgtcttc caatgtcagc
     2941 ggctcgaaat agaggcggtc gctggtgtcg aagtcggtgg acacggtttc tgggttgcag
     3001 ttcaccataa tcgtttcaaa gcccgattcg cgcagggcga gtgcggcgtg aacgcagcag
     3061 tagtcaaact cgatgccctg accgatgcgg ttcgggccgc cgccgagaat catcactttt
     3121 ttacggtcgg aaggacggga ttcgcattct tcttcgtaag tggagtaaag ataggcggtt
     3181 tcggtggcga actcggcggc gcaggtgtca acgcgtttgt aaaccggatg cagcttcagc
     3241 gcgtagcggt gttcgcgcac ttctttttcg cttacgttca acaattgtgc caaacgtttg
     3301 tcggagaagc ctttgcgttt cagacggcgt agggcggcga aatccaaatc actcaaaatg
     3361 ccgtctgaaa ccgctttttc ttccttcatc aagtcttcga tttgcgccag gaaccaaggg
     3421 tcgatggcgc agatttcgtg gatttcttcc agcgtgaagc cggcgcggaa cgcgtctgcc
     3481 acaaacagca tacgttcggg gccggggttt gccagttcgc ggcggatttc cgctttgtcg
     3541 gagcttctcg gattgaagcc gcacaagcct gtttccaagc cgcgcagggc tttttggaag
     3601 ctttcctgaa tcgtgcggcc catcgccatc acttcgccca cggatttcat ctgcgtggtc
     3661 aggcggtcgt ctgcggcagg gaatttttca aacgcaaaac gcgggatttt ggttaccaca
     3721 tagtcgatgg acggctcgaa tgacgcgggg gttttgccgc cggtgatgtc gttgcgcaac
     3781 tcgtccagct taaagccgac cgccagtttc gccgccacct tcgcaatcgg gaagcccgtc
     3841 gctttggaag ccagcgcgga cgaacggctc acgcgcgggt tcatctcaat cacaatcatc
     3901 tcgccgtttt cagggttcac cgcaaactgc acgttcgagc cgccggtatc cacgccgatt
     3961 tcgcgcaata ctgccaacga agcattacgc atgatttggt attctttgtc cgtcagcgtt
     4021 tgcgcaggcg caaccgtaat cgagtcgccc gtatgcacgc ccatcgggtc gaagttttca
     4081 atcgagcaga taatgatgca gttgtcgttc ttgtcgcgca ccacttccat ctcgtactct
     4141 ttccagccga gaacagactg ctcaatcagc agctcgtgcg taggcgacgc atcgaaaccg
     4201 cgttcgcaaa tcgccaaaaa ctcatcttta ttgtaggcaa tgccgccgcc cgaaccgccc
     4261 atcgtgaaag acggacgaat cagggtaggg aagccgacct gttcttgcgc tgccaaagct
     4321 tcgttcatcg tgtggcagac aaaagatttc gggcaggaga ggccgatttt ttccatcgct
     4381 tctttaaaac gaccgcggtc ttccgccttg tcaatcgcgt cttccgtcgc gccgatcagc
     4441 tcgacattgt atttcgccag cacgccgttg cgcgccaaat ccagcgcaca gttcagcgcg
     4501 gtctgaccgc ccatcgtggg cagaatcgca tcaggacgct ccttggcgat aatcttctcc
     4561 accgtctgcc acataattgg ctcgatgtag gtaacatccg ccatttcagg gtcggtcatg
     4621 atggtggcgg ggttggaatt caccagaatg actttatagc cttcttcacg caaagcctta
     4681 caggcctgtg cgcccgaata gtcaaattcg caggcctgac cgataacgat agggccggcg
     4741 ccgatgataa ggatggattt taggtcggta cgtttgggca tgggtggtta ctcttgaatt
     4801 aaagaaggtt gttttgttac atagctttta agaaaagtat ttcccttttc taaaattgaa
     4861 gctaaaacat catcttctat gttagataaa atattctcta aatctgcgct tgatttaatt
     4921 ttaaagaatt cttttgtttg agaatggtat acaagagaag gtttatttag ctgtaaaagt
     4981 tctgctatat tatttaatga accaatactc ttaccatccc ataaaataaa gccataatca
     5041 gcaatttctg ccattttctt atcttttgct gtataaaata cccttccagt tcctttgctg
     5101 tctacttgga caaactgcca attccccaca ttatttcggt aaattttgcc agaaaagtaa
     5161 atatgcacat tagcataatc ttgttcttgt agaaattttt ggatagcttt atcagcccca
     5221 ttagcatctc caataacaat atcaaaatta ttgctaagaa tattgttaat tctttctcgt
     5281 atttgtggat ttagtcgtga aatgctgcgt gaaccagaaa agaaaatagt gcgcattttt
     5341 atcctctagt ctttgtcatt gctaaaacaa ttacagatct agcatttttt gaaaacaatt
     5401 tttcagttga tatttccaat gttgctccgc tatcaaataa atcatcaatt actaaaatat
     5461 tcttattgga tagatctata ttgtcaattg tgatggaatt attcagtatt tctagttttt
     5521 ctgatttttc ttcaatattt ttgagtggtg tgtgtgagct agattttctt aaaataggag
     5581 aatatggaat attcaagcga tcacttagtt ctttggcaat taattgaact ggttgattaa
     5641 tacgctctgt tgtaaaaggg gcgggaacaa ttaaatttat agattctaaa ccactaaatt
     5701 tttgtaaaat atagtctacc agcaaagaaa cattttgggt ttgattacga tattttaatt
     5761 gataaaccca ttctccaatc acacttctct tgctatcaaa gtgaggatgc cctaattcat
     5821 cataacctaa caaaatactt ttttgcatat gatggtctaa agcaaatcct tttgtccagt
     5881 taccatttag ttctatcgcc atttcattga ctccttgtca aaattaagta taacgagcaa
     5941 tcctagcaag ccgtagcccg catgtagggt atgtgcggta cgcacgcacg cgttcttcat
     6001 tttccctgta accccaaccc accgcatgcg cgccttgcgg cacacactct gccgacggat
     6061 tcaaaggtcg tctgaaaaaa cgctcgcggc gtttgttaca tctgccttgc gataaaggct
     6121 gcctgaaaaa ttcccactgt tgatatttcg ggcattcttt ctcaaaccgc ctgcaaccg
//
LOCUS       DAWGNT010000117         6175 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.117, whole genome shotgun sequence.
ACCESSION   DAWGNT010000117 DAWGNT010000000
VERSION     DAWGNT010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6175
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.117"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(4..462)
                     /locus_tag="WHR98_001502"
     CDS             complement(4..462)
                     /locus_tag="WHR98_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002257756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308166.1"
                     /translation="MLTKLKILLFLFLFVFVLAINLLFFFFSSDIESFGNYQFEYVYD
                     KGWPANYILVMKDGNEGNFDKIISGLVLEYYKEDDNIYFSYIDGQGFASDSCYYKPEI
                     LYGKIILNKNHIININSMEKNNFLSEDKIMKGTRNWLADPKNKCNIQTLD"
     gene            complement(1026..1229)
                     /locus_tag="WHR98_001503"
     CDS             complement(1026..1229)
                     /locus_tag="WHR98_001503"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308167.1"
                     /translation="MLSLEIQQEGFTIGGGLVLGGCAGAHLARKEPLILTGKTGAGAS
                     AIANASIGYQWTVNLSEPKEGAK"
     gene            complement(1794..2729)
                     /locus_tag="WHR98_001504"
     CDS             complement(1794..2729)
                     /locus_tag="WHR98_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 49 family protein"
                     /protein_id="HEZ2308168.1"
                     /translation="MGHNMMTTQKWYEHITNVIIGNTANFNSGCLDSIDYVDERKGVP
                     LAAMQHIFMDVRAAASHAYLFEHDLKKFKQYAYVAGKLGVLLSVNSTDPEPFFFPCDM
                     LNIQNPMFLMLMSDSPQLREFLVRNIDNIANDTEAFINRYDLNRHMIYNTLLMVEGKQ
                     LDRLKQRSEKVLAHPTPSKWLQKRLYDYRFFLAFAEQDAEAMKAALEPLFDKKTARMA
                     AKETLSYFDFYLQPQIVTYAKIASMHGFDLGIDHEIAPRDLIVYDPLPADEYQDIFDF
                     MKQYDLSYPYEYLQDWIDYYTFKTDKLVFGNAKRE"
     gene            complement(2732..5266)
                     /locus_tag="WHR98_001505"
     CDS             complement(2732..5266)
                     /locus_tag="WHR98_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-layer family protein"
                     /protein_id="HEZ2308169.1"
                     /translation="MLKTPPTLAAELSGKTGVSISAPYANENSRILLSTTDISSENGK
                     IKIQSYGDQYYYARQSELYTFERRSYKTGKWYNRKHITEVKEHKNAKPDAVNLSASQG
                     IDIKSGGSIDAYATAFDAPKGSINIEAGRKLTLYAVEELNYDKLDSQKRRRFLGISYS
                     KAHDTTTQVMKTALPSRVVAESANLQSGWDTKLQGTQFETTLGGATIRAGVGEQARAD
                     AKIILEGIKSSIHTETVSSSKSTLWQKQAGRGSNIETLQLPSFTGPVAPVLSAPGGYI
                     VDIPQGNLKTQIETLTKQPEYAYLKQLQVAKNINWNQVQLAYDKWDYKQEGLTEAGAA
                     IIALAVTVVTSGAGTGAVLGLNGAAAAATDAAFASLASQASVSFINNKGNIGNTLKEL
                     GRSSTVKNLVVAAATAGVADKIGASALNNVSDKQWINNLTVNLANAGSAALINTAVNG
                     GSLKDNLEANILAALVNTAHGEAASKIKQLDQHYIVHKIAHAIAGCAAAAANKGKCQD
                     GAIGAAVGEIVGEALVKNTDFSRMSATEIEKSKAKITAYSKLVAGTASAVVGGDVNTA
                     ANAAQIAVENNTLYPRCVGAKCDEFQKEQQKWIRENPEEYREVLLLQTGFIPIIGDIQ
                     SFVQAQTAADHLFALLGVVPGIGESIQAYKVAKAAKNLQGMKKALDKAVTVATAQGYV
                     SKTKIKVGQTELRVTAATDKQLLKAIGEGRDTTGKMTEQLFDSVAKQNGFRVLSGGKY
                     GGNNGFDHVWQAADGSVVLIVESKQIRNGTVQLNPNGAGGYTQMSEDWIRQVLDQLPD
                     GSPAKAAVFKANKNGTLKTAIAGVDRQTGKAVILPVKVPSKTNIRR"
     gene            complement(5626..6000)
                     /locus_tag="WHR98_001506"
     CDS             complement(5626..6000)
                     /locus_tag="WHR98_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF596 domain-containing protein"
                     /protein_id="HEZ2308170.1"
                     /translation="MDEKQKIKILDFQIDLSSIFNSYKNQMGINIQDKNLKNNFCSFM
                     EELLNDGSIRLHDYTDGIGIPLTGTSKEQVQKLKDIWPTLEDAQAIWPEDPWYYLEWL
                     WWDIACPIDLADLPNIDIYEQA"
BASE COUNT         1606 a         1363 c         1270 g         1936 t
ORIGIN      
        1 cgtttagtct agagtctgta tattacattt atttttaggg tctgctagcc aatttcttgt
       61 tcccttcatt attttatctt ctgaaagaaa attatttttt tccatgctat taatattaat
      121 gatatgattt ttatttaaaa taatttttcc atataaaatt tccggtttgt aatagcaaga
      181 gtctgaagca aatccttgcc cgtcaatata agaaaaataa atgttatcat cctccttata
      241 atattctaaa accaatccgg atattatttt atcaaaattc ccttcatttc catctttcat
      301 gactaaaata taattagcag gccaaccttt atcgtaaaca tattcaaact gatagttccc
      361 gaaactctcg atatccgaac taaaaaagaa gaaaagcaaa ttaatagcca atacaaaaac
      421 aaataagaac aaaaatagca aaattttcaa cttagttaac aatatttacc tctcctttaa
      481 attcaatcct gaaaggtacc ccttaccctg ggctaccaat tatagtttcc atatttctaa
      541 atattgtttt tacattactt ttttctcccc ccaaaggaat tcattttaaa atcatgcttt
      601 tcaggtgcta atcgatactt accattaaca tctttaatca cagatatatt tccatgtata
      661 gcccaacgtg aaaaatctga gtattatata cagttatacc ttactgaaac aaagctagct
      721 gtacatatct gtaccatatt tttactacaa acaaaaaata tttataatta ttaaggataa
      781 gataaaaacc cccaacgcca gattaattct taataatttc aaataaaaaa tatttgagat
      841 tttttctttt ccaaataata tattgaaata tttaaagtta aggtagcttg atttaagtag
      901 aaaatcaaaa aaaccattaa ttaatttttc ttctttaaat attttatatg atattataaa
      961 attaaataac attgcgaaaa catatgaaat catcaaaata ccaaatatat agtgggaatg
     1021 cattattatt tagctccttc ttttggctct gacaaattga cagtccattg atatccaatg
     1081 cttgcatttg caattgctga cgcacctgcc cctgttttcc ctgttagtat caatggttct
     1141 tttcttgcaa gatgtgcacc tgcacaacca cctaatacta aaccaccacc tattgtaaat
     1201 ccttcctgtt gtatctctaa tgataacatt ttcttcttgt gccgccctta atacagattg
     1261 tggaattgga ttgacctgag caggaacttc taaaataagt tttcctgtaa gttttcttcc
     1321 tcttagcgga gcaggtgtac ttggaacatt ggaaatgaca aagtgagtgc gcaaagccac
     1381 ctgaaggcga tgtgtttgaa cctgttgaaa gcggccaaca ggctaaatgc gcccgctgcc
     1441 gcctaaaagg cagcccggat gcctgattat cgggtatccg gggaggatta agagggtgtt
     1501 tgggtagaat taggaggtgt tatggggcaa aaacagccga aaacctgtgt ttgggtttcg
     1561 gatgtcgggg aagggctttt ttgcaaaggt ctcaactcat gttattgcaa agatctcatg
     1621 ccttgttttg ccagcaggtt gagttcttct ccgacaatca gcgtggtaaa gccccgccac
     1681 aacacagatc tatgtactgt ggaagggctt caatttatag ctttcgaaaa tctttcagct
     1741 ttaagacggc ctaaagttgt aatctataaa acaggagctc agagttttac ggctcactct
     1801 cgcttcgcgt taccaaatac cagcttatcg gttttgaacg tatagtaatc tatccaatcc
     1861 tgcagatatt catacgggta agacaagtca tactgtttca taaaatcgaa gatgtcttga
     1921 tattcgtctg ccggcagcgg atcgtaaaca atcaaatccc tcggtgcgat ttcgtggtct
     1981 atgcccaaat cgaaaccgtg catggatgcg attttggcgt aggtaacgat ttgcggctgc
     2041 aggtagaaat cgaaatagga caatgtttct ttggcagcca tacgcgcggt ttttttatcg
     2101 aaaagcggct ctaaggcggc cttcatcgcc tcggcatcct gttcggcgaa agcgaggaag
     2161 aagcggtaat cgtacaaccg cttttgcagc catttgctag gggtgggatg cgccaagact
     2221 ttctcgctac gttgtttcaa ccgatcaagc tgcttaccct ccaccatcag cagagtattg
     2281 taaatcatat gccggttgag gtcgtagcgg tttataaagg cttctgtatc gttggcgatg
     2341 ttgtcgatat tgcgcaccag aaactcacgc agctgtgggc tgtcgctcat cagcatcaga
     2401 aacatcggat tttgaatgtt gagcatgtca cagggaaaga agaagggttc agggtctgta
     2461 gaatttacac tcagcaaaac ccccagcttt cctgcaacat aagcatattg cttgaatttc
     2521 ttaagatcat gttcaaatag ataggcatgg gaagctgcag ctctaacgtc catgaaaata
     2581 tgttgcatag ctgcaagcgg aacgcctttt ctttcatcta cataatctat agagtcaagg
     2641 caaccgctat tgaaattagc agtattgcct atgattacat tagtaatatg ctcataccat
     2701 ttttgggtgg tcatcatatt gtgccccatt gttatctcct tatattggtt ttagaaggaa
     2761 ctttgacagg aagaataacg gccttacctg tttgacgatc aacgcctgct attgctgttt
     2821 ttaatgtgcc gttcttattt gctttgaaga cagcagcttt agcgggacta ccatcgggta
     2881 attgatctaa aacttgtcta atccaatcct cactcatttg cgtatatcca cccgcaccat
     2941 tcggattcag ctgtaccgta ccgttcctaa tctgcttact ttctacaatc aaaacgacac
     3001 taccatcggc agcctgccat acatgatcaa aaccgttatt tccgccgtat ttgccgcccg
     3061 aaagcactct gaagccattt tgtttagcta cagagtcaaa taactgctcg gtcattttac
     3121 ctgtcgtgtc ccttccttcg ccaatagctt tcagcaattg tttgtcagtt gctgcagtaa
     3181 cccttaattc agtttgaccg actttgattt tggttttact gacatagccc tgtgcagtgg
     3241 caacggttac tgccttgtcc aaggcttttt tcatgccttg taaatttttt gccgctttcg
     3301 ctactttata ggcctgtatc gattcaccga tacccggaac cacacccagc aaagcaaaca
     3361 ggtgatcggc agcggtctgt gcttgtacaa aactctgtat atcaccgata attggaataa
     3421 atcctgtctg aagaagcaaa acttctcgat attcttcagg attttcacgt atccattttt
     3481 gttgttcctt ttgaaattca tcacactttg caccaacgca tctaggatac aaagtattat
     3541 tctccaccgc tatctgtgcc gcattcgccg ctgtattcac atccccgcct acaacggcag
     3601 acgcagtgcc ggcaaccagt tttgaatagg cagtaatctt cgctttagat ttttcgattt
     3661 cggtcgcact catacgactg aaatcagtat tcttaaccaa agcctcacca acaatctcac
     3721 cgactgcagc gcctatcgcg ccatcctgac acttgccctt attcgccgcc gctgccgcac
     3781 agcccgctat ggcatgggca atcttgtgga ctatgtagtg ctgatccaat tgtttgattt
     3841 tacttgctgc ctctccatgc gcagtattca ccaaagccgc aaggatattc gcttccagat
     3901 tgtctttcag gctgccgccg ttgacagcgg tattaatcag tgcggcactg cccgcattgg
     3961 ccaggttgac ggtcaggttg ttgatccact gcttatcgct gacattgttc aatgccgaag
     4021 cgccgatttt gtcggctacg cctgcggtag cggcggcaac caccagattt ttcaccgtgc
     4081 tgcttctgcc cagctctttc agggtgttac cgatattgcc tttgttgttg atgaacgata
     4141 cggaagcctg gctggccaaa gaggcgaatg ctgcatcggt tgcggcggcg gccgcaccgt
     4201 ttaatcccaa tacggctccg gttcctgcgc ctgaggtgac cacggtaacg gccagtgcga
     4261 taatcgccgc acctgcttcg gttaagccct cctgtttgta gtcccattta tcgtaagcaa
     4321 gctgcacctg attccagttg atgtttttcg caacttgaag ttgtttcaaa taagcatact
     4381 cgggctgttt ggtgagggtt tcgatttggg ttttcagatt gccttgggga atatcgacaa
     4441 tgtaaccgcc gggtgcggac agtacgggcg caacgggacc ggtgaaactc ggcaattgca
     4501 aggtttcgat gttactgccc cgtcctgcct gtttttgcca tagagtagat ttgctgctgc
     4561 tcacggtttc tgtgtggatg ctgcttttga tcccttcgag gataatcttg gcatctgccc
     4621 gtgcctgctc gcctacgcct gcgcgtatgg ttgcgccacc cagtgtggtt tcaaactgtg
     4681 tgccttgcag tttggtatcc cagcccgatt ggaggttggc tgattctgca actacccttg
     4741 agggcagcgc ggttttcatg acttgggtgg tggtgtcgtg tgctttgctg tagctgatgc
     4801 cgagaaatct gcgccttttt tggctgtcta gtttgtcgta gttgagctct tctacggcat
     4861 agagtgtcaa tttccgcccg gcttcgatgt taatgctgcc tttgggggca tcgaatgcgg
     4921 tggcgtaggc gtcgatgctg ccaccagatt tgatgtcgat gccttgggat gcgctgaggt
     4981 ttactgcgtc gggcttggcg tttttgtgtt ctttgacttc ggtaatgtgt ttgcggttgt
     5041 accatttgcc ggttttgtag ctgcggcgtt caaaggtata gagttcgctc tgtctcgcat
     5101 agtaatattg gtcaccgtaa gattgaattt tgattttgcc gttttccgaa ctgatatccg
     5161 tggtgctgag caggatgcga ctgttctcat tggcatacgg tgcgctaatg ctcacaccgg
     5221 ttttacccga aagttctgca gcaagcgtag ggggtgtctt cagcacgcac gcgtctgggc
     5281 agtatatagg gaatctgaat atttacttgc ataacaaatg ccgtctgaaa aattgtgagc
     5341 ttttcagacg gcattgagcc gtaaatcatg gaacgcgtgc gtgctgaagc acacacctta
     5401 cgcatggatt ttaggtttca tgcaggctac agcttgcttc cataaatcat ttttatcaga
     5461 gctcgtaggt acggttagcc gcctttagcg gcgtaaccgt acgaatgaaa tgccaagttg
     5521 caaggccgtc tgaaaaagtt gaaaaacaga tttcagacgg ccttgttatt ttataaagtt
     5581 tgctgatatg cgtacggtta cgccgctaaa ggcggctaac catacctacg cttgctcata
     5641 aatatcaata ttcggcaaat cggccaaatc tattggacac gcaatatccc accaaagcca
     5701 ttctaagtaa taccaagggt cttcaggcca tattgcttgg gcatcttcca aagtaggcca
     5761 tatgtctttc aatttctgca cttgttcttt tgaagttcca gttagaggaa ttccgatacc
     5821 gtcggtataa tcatgtaaac ggattgaacc gtcatttaac agttcttcca taaaagaaca
     5881 gaaattgttt tttaagtttt tatcttgaat attaataccc atttgatttt tataagagtt
     5941 aaaaattgag gataaatcga tttgaaaatc aagaatctta attttttgtt tctcatccac
     6001 ggtaaaatcc tttgtaaatt attggaattt aagctccaat ttagtacctt taataaatga
     6061 tggaggattc tgcaaatcta atgtccatcg tgcttgagtt gaattctctg tttttgaaaa
     6121 atttcttaat gcaatttttg ttcctgccca ttctccagta ctgataatgc cattt
//
LOCUS       DAWGNT010000118         6161 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.118, whole genome shotgun sequence.
ACCESSION   DAWGNT010000118 DAWGNT010000000
VERSION     DAWGNT010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6161
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.118"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            120..1016
                     /gene="glyQ"
                     /locus_tag="WHR98_001507"
     CDS             120..1016
                     /gene="glyQ"
                     /locus_tag="WHR98_001507"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEZ2308171.1"
                     /translation="MLTFQQIIFKLQTFWADKGCTVIQPFDMEVGAGTSHPATCLRAL
                     GPEPWFAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVALKPAPANIQDLYLDSLRELGI
                     DPKVHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCTPVLGEITY
                     GIERLAMYLQGVENVYDLVWAKTLDGNTVTYGDVYHQNEVEQSTYNFEYSDADWLLRQ
                     FNDYEAQAKRLLAEENASLALPAYELVLKAGHTFNLLDARGAISVTERATYIGRIRAL
                     SRAVAQKYVESREKLGFPLIKK"
     gene            1133..3196
                     /locus_tag="WHR98_001508"
     CDS             1133..3196
                     /locus_tag="WHR98_001508"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEZ2308172.1"
                     /translation="MTTQTLLIELLTEELPPKALNNLGNHFAAVVAEGLEKAQLVDGA
                     VEFTAYASPRRLAVQVKNVKAVQADQKIVKKGPAVANAMKDGAPTKALEGFARGAGAK
                     IEDLTIVHDGKQDVYAYEYVQTGKPLGELLEDIINQAVKKLPIPKVMRWGSSTFTFVR
                     PVHGLIVLHGGDIVNVSVLGLQSSNQTLGHRFLSNGEITIENADSYAEQMRGQGKVVA
                     SFAERKAAIQTALEGQARRLNATVAADEALLDEVTALVEYPVVLEAGFEEHFLAVPQE
                     CLILTMQQNQKYFPLLDQNGKLMNRFLLVSNLQTEDPSHIIQGNERVLRARLSDAEFF
                     YKQDQKATLESRLPKLSSVVYHNKIGSQAERIERLQSIAAHIAKALGADAAAAERAAR
                     LAKADLVTEMVGEFPELQGTMGKYYARLDGETEEIAEAVEQHYQPRFAGDKLPESKIA
                     TAVALADKLETLVGIWGIGLIPTGDKDPYALRRAALGILRMLMQYGLDVNELIQTAFD
                     SFPKGLLNEQTPSETADFMQARLAVLLQNDYPQDIVAAVLAKQPRRLDDVVAKLQAVA
                     AFKQLPEAAALAAANKRVQNLLKKADAELGAVNESLLQQDEEKALFAAAQGLQPKIAA
                     AVAEGNFQTALSELASVKPQVDAFFDGVMVMADDAAVKQNRLNLLNRLAEQMNAVADI
                     ALLGE"
     gene            3213..4259
                     /locus_tag="WHR98_001509"
     CDS             3213..4259
                     /locus_tag="WHR98_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEZ2308173.1"
                     /translation="MPSEAFRRHRAYRENKLQPLVSVLICAYNVEKYFAQSLAAVVNQ
                     TWCNLDILIVDDGSTDGTLAIAKDFQKRDSRIKILAQAQNSGLIPSLNIGLDELAKSG
                     GGEYIARTDADDIAAPDWIEKIVGEMEKDRSIIAMGAWLEVLSEEKDGNRLARHHRHG
                     KIWKKPTRHEDIADFFPFGNPIHNNTMIMRRSVIDGGLRYNTERDWAEDYQFWYDVSK
                     LGRLAYYPEALVKYRLHANQVSSKYSVRQHEIAQGIQKTARNDFLQSMGFKTRFDSLE
                     YRQIKAVAYELLEKHLPEEDFERARRFLYQCFKRTDTLPAGAWLDFAADGRMRRLFTL
                     RQYFGILHRLLKNR"
     gene            4301..5128
                     /locus_tag="WHR98_001510"
     CDS             4301..5128
                     /locus_tag="WHR98_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HEZ2308174.1"
                     /translation="MQNHVISLASAAERRAHIAATFGARGIPFQFFDALMPSERLEQA
                     MAELVPGLSAHPYLSGVEKACFMSHAVLWKQALDEGLPYIAVFEDDVLLGEGAEKFLA
                     EDAWLKERFDPDSAFIVRLETMFMHVLTSPSGVADYCGRAFPLLESEHWGTAGYIISK
                     KAIRFFLQHFVMLQPEQIKPIDLMMFSDFFDKEGMPVYQVSPALCAQELHYAKFHDQN
                     SALGSLIEHDRLLNRKQQRRDSPANTFKRRLIRALTKISREREKRRQRREQFIVPFQ"
     gene            5140..5235
                     /locus_tag="WHR98_001511"
     CDS             5140..5235
                     /locus_tag="WHR98_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lacto-N-neotetraose biosynthesis glycosyl
                     transferase"
                     /protein_id="HEZ2308175.1"
                     /translation="MDIVFAADGRMRRLFTLRQYFGILHRLLKNR"
     gene            5277..6119
                     /locus_tag="WHR98_001512"
     CDS             5277..6119
                     /locus_tag="WHR98_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HEZ2308176.1"
                     /translation="MQNHVISLASAAERRAHIAATFGRHDIPFQFFDALMPSEELNRV
                     MAELVPGLAKQHLLSEVEKACFMSHAVLWKQALDEGLPYVAVFEDDVLLGKDAEKFLA
                     EDTWLEERFDKDSAFIVRLETMFAKVIVRPDKVLNYENRSFPLLESEHWGTAGYIISR
                     EAMRFFLERFAVLPAEWIKAVDWMMFTYFFDKEGMPVYQVNPALCTQELHYAKFLSKN
                     SMLGSDLEKDREQERRHRRSLKVMFDLKRALGKFGREKKKRMERQRQAELEKAYGRRV
                     ISFK"
BASE COUNT         1598 a         1637 c         1606 g         1320 t
ORIGIN      
        1 aatttaatcc actatatcat gtatgccgtg ttttcaaatc agtctgtctt tgagataaac
       61 ctatccaaac agcaatggaa acagtaaaat aaacccttta ttttatcgaa tcataagcca
      121 tgcttacctt ccaacaaatc atcttcaaac tgcaaacatt ctgggcagac aaaggctgca
      181 ccgtcatcca acccttcgac atggaagtcg gtgcaggtac ttcccacccc gccacctgcc
      241 tgcgcgcact cggccccgag ccttggtttg ccgcctacgt ccaacccagc cgccgcccca
      301 aagacggccg ctacggcgac aaccccaacc gcctgcaaca ctattaccaa ttccaagtcg
      361 ccctcaaacc cgcccccgcc aatatccaag acctttatct cgactccctg cgcgaattgg
      421 gcatcgaccc caaagtgcac gacatccgct ttgtcgaaga cgactgggaa aaccccaccc
      481 tcggcgcgtg gggtttgggc tgggaagtct ggctcaacgg catggaagta acccagttta
      541 cctatttcca acaagtcggc ggcatcgact gcacgcccgt actcggcgaa atcacctacg
      601 gcatcgaacg cttggcgatg tacctgcaag gcgtggaaaa cgtctatgac ctcgtttggg
      661 caaaaacgct ggacggtaat acagtaactt acggcgacgt gtaccaccaa aacgaagtcg
      721 aacaatccac ctacaacttc gaatacagcg atgccgattg gctgctgcgc cagttcaacg
      781 actacgaagc gcaagccaaa cgtctgcttg ccgaagaaaa cgccagcctt gccttgcctg
      841 cctacgagct ggtcctcaaa gcggggcata cgttcaacct cttggacgcg cgcggcgcga
      901 tttccgtaac cgagcgggca acttatattg gacgtattcg tgcattgagc cgcgccgtgg
      961 cgcaaaaata tgttgaaagc cgcgaaaaac tgggcttccc gttgattaaa aaataacgat
     1021 acgtcgtctg aaacaggttt tcagacggcc ttttttgcgt atccattaat acaggccgta
     1081 cggcatatgc aggctttata agcagggcct acggacaaac agaaagtctc atatgacaac
     1141 ccaaaccctt ttaatcgaac tccttaccga agaactcccg ccaaaagccc tgaataatct
     1201 gggcaaccat tttgccgccg tcgttgccga aggcttggaa aaagcgcaac tggttgacgg
     1261 cgctgtcgaa tttacggctt atgcctcgcc gcgccgtttg gcggttcaag tcaaaaacgt
     1321 caaagccgtt caggccgacc aaaaaatcgt gaaaaaaggc cctgccgtag cgaatgccat
     1381 gaaagacggt gcgccgacca aggctttgga aggtttcgca cgtggtgcgg gcgcgaaaat
     1441 cgaagatttg accatcgtcc acgacggcaa acaggatgtg tacgcctacg aatacgtcca
     1501 aaccggcaaa ccgctgggcg aacttttgga agacattatc aatcaagccg ttaagaaact
     1561 gccgattccg aaagtgatgc gttggggcag cagcacgttt accttcgtgc gccctgttca
     1621 cgggctgatt gtgctgcacg gcggcgacat cgtaaacgtc agcgttttgg gtctgcaaag
     1681 cagcaatcaa accttgggac accgcttctt gtccaacggc gaaatcacca ttgaaaacgc
     1741 cgacagctac gccgaacaaa tgcgcgggca aggcaaagtc gtcgcttcgt ttgccgagcg
     1801 caaagccgcg attcagacgg cattggaagg gcaggcgcgt cgtctgaacg cgaccgttgc
     1861 cgccgatgaa gcattgctgg acgaagtaac cgcgctggtc gaataccccg ttgttttgga
     1921 agccggtttt gaggaacact tcctcgccgt gccgcaagaa tgcctgattc tgacgatgca
     1981 gcaaaaccaa aaatacttcc cgctgctcga tcaaaacggc aagctgatga accgcttcct
     2041 gttggtctcc aacctgcaaa ccgaagatcc gtcgcacatc atccaaggca acgaacgcgt
     2101 tttgcgcgcg cgcctgtctg atgccgagtt cttctacaaa caagaccaaa aagcgacttt
     2161 ggaaagccgc ctgccgaaat tgtccagcgt ggtgtaccac aacaaaatcg gctcgcaagc
     2221 cgaacgcatc gaacgcctgc aaagcattgc cgcccacatc gccaaagcat tgggcgcgga
     2281 tgccgccgct gccgaacgcg ccgcgcgtct tgccaaagcc gacttggtaa ccgaaatggt
     2341 cggcgagttt cccgaactgc aaggcacgat gggcaaatac tatgcccgct tggacggcga
     2401 aaccgaagaa atcgccgaag ccgtcgagca acattaccaa ccgcgttttg ccggcgacaa
     2461 gctgcccgaa agcaaaattg ccactgccgt tgcacttgcc gacaagctgg aaaccctggt
     2521 cggcatttgg ggcatcggtc tgattccgac cggcgacaaa gacccctacg ccctgcgccg
     2581 cgccgccttg ggtattttgc ggatgctgat gcagtacggt ttggacgtga acgaactgat
     2641 tcagacggca ttcgacagct tccccaaagg cttgctcaac gagcaaacgc cgtctgaaac
     2701 cgccgacttt atgcaggcgc gccttgccgt gttgctgcaa aacgattatc cgcaagacat
     2761 cgttgccgcc gtattggcga aacagccgcg ccgtttggac gacgtagtgg cgaaactgca
     2821 agccgttgcc gcgttcaaac aactgcccga agccgccgcg ctcgccgccg ccaacaaacg
     2881 cgtgcaaaat ctgctgaaaa aagccgatgc cgagttgggc gcggttaacg aaagcctgct
     2941 gcaacaggac gaagaaaaag ccctctttgc cgccgcgcaa ggtttgcagc cgaaaatcgc
     3001 cgccgccgtt gccgaaggca atttccaaac cgccttgtcc gaactggctt ccgtcaagcc
     3061 gcaagtcgat gccttctttg acggcgtgat ggtgatggcg gacgatgccg ccgtgaagca
     3121 aaaccgtttg aatctgctga accgtttggc agagcagatg aacgcggtag ccgacattgc
     3181 gcttttgggc gagtaaccgt tgtacagtcc aaatgccgtc tgaagccttc agacggcatc
     3241 gtgcctatcg ggagaataaa ttgcagcctt tagtcagcgt attgatttgc gcctacaacg
     3301 tagaaaaata tttcgcccaa tcattagccg ccgtcgtgaa tcaaacttgg tgcaacttgg
     3361 atattttgat tgtcgatgac ggctcgacag acggtacgct tgccattgcc aaggattttc
     3421 aaaagcggga cagccgtatc aaaatccttg cacaagctca aaattccggc ctgattccct
     3481 ctttaaacat cgggctggac gaattggcaa agtcgggggg gggggaatat attgcacgca
     3541 ccgatgccga cgatattgcc gcccccgact ggattgagaa aatcgtgggc gagatggaaa
     3601 aagaccgcag catcatcgcg atgggcgcgt ggctggaagt gttgtcggaa gaaaaggacg
     3661 gcaaccggct ggcgcggcat cacaggcacg gcaaaatttg gaaaaagccg acccggcacg
     3721 aagatattgc cgactttttc cctttcggca accccataca caacaacacg atgattatgc
     3781 ggcgcagcgt cattgacggc ggtttgcgtt acaacaccga gcgggattgg gcggaagatt
     3841 accaattttg gtacgatgtc agtaaattgg gcaggctggc ttattatccc gaagccttgg
     3901 tcaaataccg ccttcacgcc aatcaggttt catccaaata cagcgtccgc caacacgaaa
     3961 tcgcgcaggg catccaaaaa accgccagaa acgatttttt gcagtctatg ggttttaaaa
     4021 cccggttcga cagccttgaa taccgccaaa taaaagcagt agcgtatgaa ttgctggaga
     4081 aacatttgcc ggaagaagat tttgaacgcg cccgccggtt tttgtaccaa tgcttcaaac
     4141 ggacggacac gctgcccgcc ggcgcgtggc tggattttgc ggcagacggc aggatgcggc
     4201 ggctgtttac cttgaggcaa tacttcggca ttttgcaccg attgctgaaa aaccgttgaa
     4261 aaacgccgct ttatccaaca gacaaaaaac aggataaatt atgcaaaacc acgttatcag
     4321 cttagcttcc gccgcagaac gcagggcgca cattgccgca accttcggcg cgcgcggcat
     4381 cccgtttcag tttttcgacg cactgatgcc gtctgaaagg ctggaacagg caatggcgga
     4441 actcgtcccc ggcttgtcgg cgcaccccta tttgagcgga gtggaaaaag cctgctttat
     4501 gagccacgcc gtattgtgga aacaggcatt ggacgaaggt ctgccgtata tcgccgtatt
     4561 tgaggacgac gttttactcg gcgaaggcgc ggagaaattc cttgccgaag acgcttggct
     4621 aaaagaacgc tttgaccccg attccgcctt tatcgtccgc ttggaaacga tgtttatgca
     4681 cgtcctgacc tcgccctccg gtgtggcgga ctactgcggg cgtgcctttc cgctgttgga
     4741 aagcgaacac tgggggacgg cgggctatat catttccaaa aaagcgatac ggtttttcct
     4801 gcaacatttc gtaatgttgc agccggaaca gataaaacct atcgacttaa tgatgttcag
     4861 tgattttttc gataaggagg ggatgcctgt ttatcaggtc agtccggcct tatgcgccca
     4921 agagctgcat tatgccaagt ttcacgacca aaacagcgca ttgggcagcc tgatcgaaca
     4981 cgaccgcctc ctgaaccgca aacagcaaag gcgcgattcc cccgccaaca cattcaaacg
     5041 ccgcctgatc cgcgccttga ccaaaatcag cagggaaagg gaaaaacgcc ggcaaaggcg
     5101 cgaacagttc attgtgcctt tccaataaaa ggaggagaga tggacatcgt atttgcagca
     5161 gacggcagga tgcggcggct gtttaccttg aggcaatact tcggcatttt gcaccgattg
     5221 ctgaaaaacc gttgaaaaac gccgctttat ccaacagaca aaaaacagga taaattatgc
     5281 aaaaccacgt tatcagctta gcttccgccg cagaacgcag ggcgcacatt gccgcaacct
     5341 tcggcaggca cgacattccg tttcagtttt tcgacgcact gatgccgtct gaagaactga
     5401 atcgggtgat ggcggaattg gtgccgggat tggcaaaaca gcacctgttg agcgaagtgg
     5461 aaaaagcctg ctttatgagc cacgccgtat tgtggaaaca ggcattggat gaaggtctgc
     5521 cctatgttgc cgtatttgag gatgatgtcc tgcttggcaa agacgcagaa aagttccttg
     5581 ccgaagatac ttggttggaa gagcgttttg ataaggattc tgcctttatc gttcgtttgg
     5641 aaacgatgtt tgcgaaagtt attgtcagac cggataaagt cctgaattat gagaaccggt
     5701 catttccttt gctggagagc gaacattggg ggacggctgg ctatatcatt tcgcgtgagg
     5761 cgatgcggtt tttcttggaa aggtttgccg ttttgccggc agagtggatt aaagcggtag
     5821 attggatgat gtttacttat ttctttgata aggaggggat gcctgtttat caggttaatc
     5881 ccgccttatg tacccaagaa ttgcattatg ccaagttcct cagtaaaaac agtatgttgg
     5941 gtagcgattt ggaaaaagat agggaacaag aaagaagaca ccgccgttcg ttgaaggtga
     6001 tgtttgactt gaagcgtgct ttgggtaaat tcggtaggga aaagaagaaa agaatggagc
     6061 gtcaaaggca ggcggagctt gagaaagctt acggcaggcg ggtcatatcg ttcaaatagt
     6121 ttgtgtaaaa tatagcggat taaaattaga aatggataca c
//
LOCUS       DAWGNT010000119         6121 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.119, whole genome shotgun sequence.
ACCESSION   DAWGNT010000119 DAWGNT010000000
VERSION     DAWGNT010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6121)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6121)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6121
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.119"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(275..709)
                     /locus_tag="WHR98_001513"
     CDS             complement(275..709)
                     /locus_tag="WHR98_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEZ2308177.1"
                     /translation="MAFGSMNSGDDSPMSDINVTPLVDVMLVLLIVFMITMPVLTHSI
                     PLELPTASEQTNKQDKQPKDPLRLTIDANGGYYVGGDSASKVEIEEVESRLKAAKEQN
                     ENVIVAIAADKAVEYDYVNKALEAARQAGITKIGFVTETKAQ"
     gene            complement(712..1374)
                     /gene="exbB"
                     /locus_tag="WHR98_001514"
     CDS             complement(712..1374)
                     /gene="exbB"
                     /locus_tag="WHR98_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEZ2308178.1"
                     /translation="MNLKLVFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARK
                     GNAAVKRHMRDTLSLNDAVEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLN
                     EYLVIQIRNSMAQIMRRFDYGMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMS
                     IAAVAGPIGEALVATAAGLFVAIPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQK
                     DS"
     gene            complement(1440..2282)
                     /locus_tag="WHR98_001515"
     CDS             complement(1440..2282)
                     /locus_tag="WHR98_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEZ2308179.1"
                     /translation="MDKERILTPAVVFSVALLHLAMVALLWQAHKLPVIESGNVIEFV
                     DLGDFGGGDGAPEGAGAPAAPEPQPEPEPPKPVEPPKPVLKPVVTKKADADIQQPKEE
                     PKPEEKPKPEEKPKPEPKPEAKPVPKPAEKPVEKPSEKPAEHPSNASAKADSEQGNGE
                     DKGTGTKGDGTGRGEGSGKGSGGVKGEHGEGAGSSKGNPLRANGSIPRPAYPTLSMEN
                     DEQGTVVLSVLVSPGGHVESVKIVKSSGFSRLDNAARKAAQNGHFQANAWTEFKVPVK
                     FELN"
     gene            2537..3175
                     /locus_tag="WHR98_001516"
     CDS             2537..3175
                     /locus_tag="WHR98_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEZ2308180.1"
                     /translation="MFQNFDLGVFLLAVLPVLLAITVREVARGYTARYWGDNTAEQYG
                     RLTLNPLPHIDLVGTIIVPLLTLMFTPFLFGWARPIPIDSRNFRNPRLAWRCVAASGP
                     LSNLAMAVLWGVVLVLTPYVGGAYQMPLAQMANYGILINAILFALNIIPILPWDGGIF
                     IDTFLSAKYSQAFRKIEPYGTWIILLLMLTGVLGAFIAPIVRLVIAFVQMFV"
     gene            complement(3627..4427)
                     /locus_tag="WHR98_001517"
     CDS             complement(3627..4427)
                     /locus_tag="WHR98_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEZ2308181.1"
                     /translation="MKKTIFNITKMDCPSEEQLIRMRLKDVSDIYELQFDIAGRCLTV
                     YHDNQDTTILQVLEPLNFDSHIISTEVIVDKIVFNKPDEHLEKRLLYQVLMINFVFFI
                     IECSVGIFANSMGLIADSLDMLADSFVYILALSAIGMTLAYKKRVAFLAGITQIILAL
                     FGVIEVIRRFIGAEQLPNYQLMIGTAFLALIANWLCLYLLSKNQNKEIHIKASMIFTS
                     NDIIINIGVIAAGALTLLTHSSYPDLIIGMIVFVIVLFGARNILKLAK"
     gene            complement(4563..5044)
                     /locus_tag="WHR98_001518"
                     /pseudo
     CDS             complement(4563..5044)
                     /locus_tag="WHR98_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212587.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5381..6022)
                     /locus_tag="WHR98_001519"
     CDS             complement(5381..6022)
                     /locus_tag="WHR98_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002255853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxB family glutaredoxin"
                     /protein_id="HEZ2308182.1"
                     /translation="MKLYIYDHCPFCVRARMAAGLFGADVEEAVLANDDEVTPIGMIG
                     AKQVPVLQKEDGSFMGESLDIVRHFDREDRLKDEVRPEIRAWLDKVGGYNDKLVQPRV
                     IKIGLPEFATPEAVKYFTDKKEKSIGSFSANLNKTAQYLERINADLQELENLMDGASD
                     GINGGIGMEDILVFPVLRNLTVVRGIEWPQKVMGYLMTMSEKSGVPLYFDRAL"
BASE COUNT         1627 a         1539 c         1267 g         1688 t
ORIGIN      
        1 cggcttcgtt gccttgtcct gatttttgtt aatccactat aaaaattaga aatgcacatt
       61 ttcattattc tcgcgcaggc aggactccag acttacccat ttcagtaatg tttgaaaata
      121 aaagaaaaat cagatgtttg tattcccgcc tgcgcagaaa tggagacggc gctctgtcgt
      181 ctcatttttg ttttaatcaa ctatatatag ctgattaaac ataagaaatg ccgtctgaaa
      241 gactttcaga cggcattcgt tcaagcgtcg aactttattg cgccttggtt tcggttacaa
      301 aaccgatttt ggtgattcct gcctgacggg cggcttctaa agctttgttt acataatcgt
      361 attccaccgc cttgtctgcc gcaatcgcca caatcacgtt ttcattctgc tccttggcgg
      421 ctttcagacg gctttccact tcctcgattt ccactttgct tgcagaatcc ccgccgacat
      481 aatagccgcc gttcgcatca atcgtcaggc gcagggggtc tttaggctgt ttgtcctgct
      541 tgtttgtctg ctcggacgcg gtcggcagtt ccaaagggat ggaatgcgtc agcaccggca
      601 tagtaatcat aaacacaatc agcaacacca gcatcacgtc caccaacggc gtaacgttga
      661 tgtcggacat cggagaatcg tcgccggaat tcatcgaacc aaatgccata atcagctatc
      721 cttttgatta agcaggcgga cgtgcaaatc gtgcgccatc gcatccaaat cctgggtcag
      781 tatttttgtg ccgcgattga ggaagttgta tgccaacacc gccggaatcg ccacgaacaa
      841 acccgccgcc gtcgccacca gtgcctcgcc aatcgggccg gcaaccgccg caatactcat
      901 ctgcccgctt tgcccgatat tgatcagggc gtggtaaatc ccccaaaccg tgccgaacaa
      961 cccgataaac ggcgcggtcg cgccgatgga ggcaagcgcg gtcatcccgt aatcaaaccg
     1021 gcgcataatc tgcgccatac tgttgcggat ttgaatgacc aaatactcgt tcaacggcaa
     1081 agcctgcgcc agttcggacg cttcgtttcg gcggtagttg cggtaagact gcaatgcctc
     1141 ttgcgccagt ttggacaaag gcgcatcgac ggcgcgcact ttttcgaccg cgtcgttcag
     1201 cgacaaagta tcgcgcatat gccgtttgac ggcggcattc cctttgcgcg cccgatacag
     1261 cttgatgcag cgcaagacaa ccaaacacca cgttacgata ctcatcaaca gcatcaacac
     1321 aaacacaccg atcaggacgg gatcgcccga ttcaaatact aatttcaaat tcataatgat
     1381 tccaacactg aaaaaaccaa tcaaacatcc aagctgccgc aaaccgctgc ggcaaccgcc
     1441 taattcaatt caaacttgac ggggacttta aactccgtcc aggcattggc ttgaaaatgc
     1501 ccgttttgcg ccgccttgcg tgccgcattg tccaaccgag aaaaaccact gcttttcacg
     1561 attttaacgg actcgacatg accgcccgga gaaaccaaaa cgctcaaaac aaccgtaccc
     1621 tgctcgtcat tctccataga aagcgtggga taagccgggc gcggaatgct gccgttggcg
     1681 cgtaaaggat tgcctttgct gctgccggct ccttccccgt gttcgccttt gacaccgccg
     1741 ctacctttac cgctgccttc tccgcgcccc gttccgtctc ctttggtacc ggttccctta
     1801 tcttccccat taccctgctc gctgtctgct ttggcagaag cattgctggg atgttcggca
     1861 ggtttttcag acggcttctc gaccggtttt tccgccggtt tcgggacagg cttcgcttcc
     1921 ggcttaggct ctggtttcgg tttttcttcg ggtttcggct tttcttcagg tttcggctct
     1981 tccttaggct gctgaatatc cgcatccgcc tttttcgtaa ccaccggctt caaaaccggc
     2041 ttgggcggct cgacaggttt gggcggctca ggttcaggtt gcggctcagg cgcagcaggc
     2101 gcacctgcac cttcgggtgc gccgtcccct ccgccaaaat cgcccaaatc gacaaattca
     2161 ataacattgc ctgactctat cacgggcagc ttgtgcgcct gccagagcaa tgccaccatt
     2221 gccaaatgca gcagtgcgac ggaaaacacg actgcggggg ttaaaattcg ttctttatcc
     2281 ataattcggg cataataata gcaacaattc ctatttgcaa cctattttta caatttttgg
     2341 tcatatgaat gtctgttccg ttcacaggca aaccgtgttt aaacgctgta ttacagcaaa
     2401 tcatcagata acgggccggc agaaaaaatg attccgtctg atttcttatt ccaataaaat
     2461 caggttagat gatatattgc cgcttctgtc tgtcagccgt ttcgggctgc acaccacatc
     2521 tgttcaaagg aaaaccatgt ttcaaaattt tgatttgggc gtgtttctgc ttgccgtcct
     2581 gcccgtgctg ctcgccatta ccgtcaggga ggtggcgcgc ggctatacgg cgcgctactg
     2641 gggagacaac actgccgaac aatacggcag gctgacactg aaccccctgc cccatatcga
     2701 tttggtcggc acaatcatcg taccgctgct tactttgatg ttcacgccct tcctgttcgg
     2761 ctgggcgcgt ccgattccta tcgattcgcg caacttccgc aacccgcgcc ttgcctggcg
     2821 ttgcgttgcc gcgtccggcc cgctgtcgaa tctggcgatg gctgttctgt ggggcgtggt
     2881 tttggtgctg actccgtatg tcggcggggc gtatcagatg ccgttggctc aaatggcaaa
     2941 ctacggtatt ctgatcaatg cgattctgtt cgcgctcaac atcatcccca tcctgccttg
     3001 ggacggcggc attttcatcg acaccttcct gtcggcgaaa tattcgcaag cgttccgcaa
     3061 aatcgaacct tatgggacgt ggattatcct gctgcttatg ctgaccgggg ttttgggtgc
     3121 gtttattgca ccgattgtgc ggctggtgat tgcgtttgtg cagatgttcg tctgactggc
     3181 tttcagacgg cataaacgct ccagaaaacg cggcaggaca tattgccctg ccgcgttttc
     3241 ctgtagtgta atcttatttt tttcatcatt attagaacca agttgcatga taataccttt
     3301 cattaactga aacactgatt aagaaactcc agtctgtcta atgatgaggt tttcacatcg
     3361 ccaaaacttg ccaatcaaat gctggattta ttgccgtctg agatttggtc aaatccaaag
     3421 gcgacattct tagaccctgt gtgtaaatca ggggtatttt tgcgtgaaat cgtcaaacgc
     3481 ttggatgaag gcttgaccaa tcaaatacca gataaacaaa ctcgcattaa ccacatttta
     3541 aaaaatcaag tttttggaag tactgccacg tatgtaggta gctttgaccg atatttgcat
     3601 aaaaactcct ttgctggtga aaggaattat tttgccaatt ttaaaatatt tctggcacca
     3661 aatagtacaa tgacaaagac aatcatgcca atgattaaat caggatagct agaatgagtc
     3721 aataacgtca atgctcccgc cgctatcaca ccgatattga tgataatgtc attggatgta
     3781 aaaatcatgc tggctttgat atggatttct ttattttgat ttttgctcag tagatataag
     3841 cacagccagt ttgcaatcaa tgccaaaaat gccgtgccaa tcatcagttg ataattgggc
     3901 agctgctcag caccgataaa acgcctaatc acttctatca ccccaaataa cgccaatatt
     3961 atctgcgtta tccccgccaa aaatgccaca cgttttttat acgccagcgt cataccaatg
     4021 gctgatagcg ccaatatata gacaaagctg tccgccagca tatctagact atcagcaatc
     4081 agccccatag aattagcaaa aataccaacc gaacactcta tgataaaaaa cacaaagtta
     4141 atcatgagca cttgatataa taatcttttt tctaagtgct catcaggctt gttaaacact
     4201 atcttatcaa caatcacttc ggtggaaatg atatgactat caaaattaag cggttcaagt
     4261 acttgtaaaa tcgttgtatc ttgattatcg tgatagacgg ttaagcaccg cccagcaata
     4321 tcaaactgta attcataaat atcagacaca tcttttaaac gcatgcgaat gagctgttct
     4381 tcggacgggc agtccatttt ggtaatgtta aaaatggtct ttttcatcta tttagttcct
     4441 tgttttgatc aggttggctc aaataaatct gtgtttatat tgctgcttgg taatttttgg
     4501 atggtttgag taaattgatt aggttaaaat ttacctttgg aagtaccgcc acgcataata
     4561 gtttagatat gtttataatc tctggataaa aaaacgtaat aagtgcttac tggataacaa
     4621 agtccaaacc aatagcaggc aaaataaggc atccaccccc cttcttcatt aaggatatat
     4681 attgagaaac aaatcgcaac taaacagaaa aaacttggga gataaagcca tttcattccc
     4741 ctattcaaga atctagccaa gataggtatt ttgtattcta caaaaaagaa aggcatttcc
     4801 aagggaaaca tgtcagataa aaacttttgt ttatttttta ctatagatag aaccttgctt
     4861 ctcaagagaa agccattaat atatagagaa tagtataagt atgaataatc ttcattagac
     4921 aaaaagaaga aatggcagat aaattacata cgatatattg gaatataaaa tatttacggt
     4981 ctaaaccttg ttcagttgca atttttttaa aattgccttg cataaaaaaa tcaaaggcgt
     5041 ccattaaact atctttcaca ttagaaattt aaaagctaaa taatacgaca aacaatgtga
     5101 agtactattc atggtttatt taaaaaataa tactattctg aacattattt agatacagaa
     5161 attaacaaat tagaactaaa caagctttta aatactttaa ttttattgga aagctataaa
     5221 aggaactata actttacaca ctagtcactt ctttttaaga ggcaaaaggg attgggaagg
     5281 tcgtcttgga gataagcact ggtatttcgg ccaatggtaa atagagttta cctcaaatag
     5341 ggtagaacct ccttcatctg tcagttaata acagccactt ttacaatgcc ctgtcaaaat
     5401 aaagcggcac gcccgatttt tcactcatcg tcatcaaata acccatcacc ttttggggcc
     5461 attcgatgcc gcgcaccacg gtcagattcc tcaaaacggg gaaaaccaaa atatcctcca
     5521 taccgattcc gccgttgatg ccgtctgaag caccgtccat caaattctcc aactcttgca
     5581 aatctgcgtt tatccgttcg aggtattggg cggttttatt caaattggcg gaaaagctgc
     5641 cgatgctttt ctcttttttg tctgtaaaat atttcaccgc ttccggcgtt gcaaattcgg
     5701 gcagcccgat tttgatcacg cgcggctgca ccagtttgtc gttgtatccg cccaccttgt
     5761 ccagccacgc ccgtatctcg gggcggactt cgtctttcag acggtcttcg cggtcgaaat
     5821 gccgcacaat gtccaaactc tcgcccataa acgaaccgtc ttctttttgc aggacgggca
     5881 cttgtttcgc accgatcata ccgatcggcg ttacctcgtc gtcgtttgcc agcacggctt
     5941 cttcaacgtc cgcaccaaac agcccggcag ccatccgcgc acgcacacaa aacgggcaat
     6001 ggtcgtaaat atacagtttc atcaaaatat tcctcgtcaa cctgtcggta ccggctacct
     6061 taacaccccg cgccacccga aacaagttta tcttcccgcc tatgcaccgt aaataaataa
     6121 g
//
LOCUS       DAWGNT010000120         6118 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.120, whole genome shotgun sequence.
ACCESSION   DAWGNT010000120 DAWGNT010000000
VERSION     DAWGNT010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6118
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.120"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(152..2080)
                     /gene="dnaK"
                     /locus_tag="WHR98_001520"
     CDS             complement(152..2080)
                     /gene="dnaK"
                     /locus_tag="WHR98_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEZ2308183.1"
                     /translation="MAKVIGIDLGTTNSCLAISENGQTKVIENAEGARTTPSVIAYLD
                     GGEILVGAPAKRQAVTNAKNTIYAAKRLIGHKFEDKEVQRDIESMPFEIIKANNGDAW
                     VKAQGKELSPPQISAEVLRKMKEAAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGRI
                     AGLDVKRIINEPTAAALAFGMDKGDNKDRKVAVYDLGGGTFDISIIEIANLDGDKQFE
                     VLATNGDTFLGGEDFDQRLIDHIIAEFKKEQGIDLKQDVMALQRLKEAAEKAKIELSS
                     GQQTEINLPYITMDATGPKHLAMKITRAKFESLVEDLITRSIEPCKIALKDAGLSTGD
                     IDDVILVGGQSRMPKVQEAVRDFFGKEPRKDVNPDEAVAVGAAIQGEVLSGGRSDVLL
                     LDVTPLSLGIETMGGVMTKLIQKNTTIPTKASQVFSTAEDNQSAVTIHVLQGERERAS
                     ANKSLGQFNLGDIAPAPRGMPQIEVTFDIDANGILHVSAKDKGTGKAANITIQGSSGL
                     SEEEIERMVKDAEANAEEDKKLTELVASRNQAEALIHSVKKSLADYGDKLDAAEKEKI
                     EAALKEAEEAVKGDDKAAIDAKAEALGTASQKLGEMVYAQAQAEAQAGESEQANASAK
                     KDDDVVDADFEEVKDDKK"
     gene            complement(2288..2560)
                     /locus_tag="WHR98_001521"
     CDS             complement(2288..2560)
                     /locus_tag="WHR98_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308184.1"
                     /translation="MKKTGKYLIYAAAFTAFCFAFQENRSEAKQPDITLSASLCEQFN
                     ILNAKDMDAEQVSLSKECDIIESSHDWEKEYGNLNEQEMLAGIVYE"
     gene            2746..3432
                     /locus_tag="WHR98_001522"
     CDS             2746..3432
                     /locus_tag="WHR98_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEZ2308185.1"
                     /translation="METFKDRLVFLWKSEAKQAKIASDIEMTIAGFSRIWNEGGLPKS
                     ETLKKIKQLKGCSIDWLLTGEGNPFPDEAPKKSLAYDTLGNEVDTDEFVFVPRYDIRA
                     AAGYGQFVDHEEPVFTMAFRRHWIENYVTRDTKNLSVISVKGDSMEGVLNDGDSILVN
                     HGENTPRDGLYVLRINENLLVKRLQIVPGGIINVISANEAYPAFEINLNDLTDDVEII
                     GRVEWFGRTI"
     gene            3564..3902
                     /gene="erpA"
                     /locus_tag="WHR98_001523"
     CDS             3564..3902
                     /gene="erpA"
                     /locus_tag="WHR98_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HEZ2308186.1"
                     /translation="MSDESPIIFTDSCCAKVADLIAEENNPDLKLRVFVNGGGCSGFQ
                     YGFTFDEIKNDDDFEIEKNGLVFLVDPMSYQYLVGAEIDYTESLQGSQFVIRNPNAET
                     TCGCGSSFSV"
     gene            3919..4065
                     /locus_tag="WHR98_001524"
     CDS             3919..4065
                     /locus_tag="WHR98_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308187.1"
                     /translation="MPSERSDGIFTFGKYIIGMNSHIIRLFEDESGFPKGTGGTVSGV
                     FVPL"
     gene            4062..4526
                     /locus_tag="WHR98_001525"
     CDS             4062..4526
                     /locus_tag="WHR98_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HEZ2308188.1"
                     /translation="MIEMSKDYRNDLYDVYVSYPPQVDRGLIRECLRENLGEEKAEGL
                     IESLDSKPQVLVEEKCTWAKREELHDYFSYLGLDIITRRYMELETVVPPEEGEGEGEG
                     ADGEMPEYLELHGGREDDISAPSQPEPPTRNIKPLLFGLLIAFLGYLLGKIF"
     gene            4561..6072
                     /gene="ubiB"
                     /locus_tag="WHR98_001526"
     CDS             4561..6072
                     /gene="ubiB"
                     /locus_tag="WHR98_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HEZ2308189.1"
                     /translation="MKWLKRLTVIVGTFYRYRLAGLCASLMGSGWICALLKMMPQSSK
                     LKNEPPAVCLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLS
                     REQIEKSLGQPIEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPVIEQ
                     DLSLMRFGAGWVERLFSDGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNS
                     DMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFR
                     DGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINLLAFFNRDYRRVATA
                     HIESGWVPADTRAEELEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQ
                     LVLLQKTLLNIEGLGRQLDPDLDLWKTAKPFLVKWMNGQVGPKALWRNLKNEAPDWAQ
                     IIPSLPRKISALIDENRQQEMRDAYIHLVKVQQRQSLWLAVIAVVLLLILLLK"
BASE COUNT         1369 a         1360 c         1648 g         1741 t
ORIGIN      
        1 aaaaatttcc agagaaccga tacaacagtt ggaacttggg tttgggaata ttacggtaga
       61 tgaacttgga acctctgtta tgctatggtc ttttatctca attgaaaaaa gcgcgaatca
      121 aacggttcgc gcttttttca gacggcatca attatttttt gtcgtctttt acttcttcaa
      181 agtcggcatc tacgacatca tcgtctttct ttgcagaagc attggcttgt tcgctttcgc
      241 ctgcttgggc ttcagcttgt gcttgagcgt aaaccatttc gcccagtttt tggctggctg
      301 tgcccagtgc ttcggctttg gcatcgatgg cggctttgtc gtcgcctttc acggcttctt
      361 cggcttcttt cagcgcggct tcgatttttt ctttttcggc agcgtcgagt ttgtcgccgt
      421 agtccgccaa agattttttc acggagtgaa tcagggcttc ggcttggttg cgggaagcga
      481 ccaattcagt cagcttttta tcttcctcag cattggcttc ggcatctttc accatgcgtt
      541 cgatttcttc ttcgctcaaa cctgaagaac cttggatggt aatgttggcc gctttgccag
      601 tgcctttgtc tttggcggaa acgtgcagga tgccgttggc gtcgatgtcg aaggttactt
      661 cgatttgcgg cataccgcgc ggtgcgggtg cgatgtcgcc caagttgaac tgacccaaag
      721 atttgttggc agaagcgcgt tcgcgttcgc cttgcagtac gtggatggtt actgcgcttt
      781 ggttgtcttc ggcggtagag aacacttgcg acgctttggt cgggatggtg gtgttctttt
      841 gaatcagctt ggtcatcacg ccgcccatgg tttcgatacc caaggacaga ggggttacgt
      901 ccagtagcaa tacgtcgctg cggccgccgc tcaatacttc gccttggatc gctgcgccta
      961 cggcaacggc ttcgtcaggg ttcacgtctt tgcgcggttc tttgccgaag aagtctctca
     1021 cggcttcttg tactttcggc atacgggact gcccgccgac caagattacg tcgtcgatgt
     1081 cgccggtgct caagccggca tctttcaatg caattttgca aggttcgata gagcgggtaa
     1141 tcaggtcttc aaccaagctt tcgaatttgg cgcgggtaat tttcatcgcc aagtgtttcg
     1201 ggccggttgc gtccatggtg atgtacggca ggttaatttc ggtttgctgg ccgctggaca
     1261 attcgatttt ggctttttcg gcagcttctt tcaggcgttg tagagccatc acgtcttgtt
     1321 tcaaatcaat gccttgttct tttttgaact cggcgatgat gtggtcgatg aggcgttggt
     1381 cgaagtcttc accgcccaag aaggtatcgc cgttggttgc caatacttcg aattgtttgt
     1441 cgccgtcgag gttggcgatt tcgatgatgg aaatatcgaa agtaccgccg cccaagtcat
     1501 atacggctac tttgcggtct ttgttgtcgc ctttgtccat accgaatgcc aaagcggctg
     1561 cggtcggctc gttgatgatg cgtttcacgt ccaaaccggc gatacggcct gcgtctttgg
     1621 tggcttgacg ttggctgtcg ttgaagtagg cagggacggt aatcacggct tcggttactt
     1681 tttcgcccaa gtaagcttcg gcggcttctt tcattttacg caggacttct gcggaaattt
     1741 gaggaggaga cagctctttg ccttgtgctt ttacccatgc gtcgccgttg ttggctttga
     1801 tgatttcgaa aggcatagat tcgatgtcgc gttggacttc tttgtcttca aatttgtggc
     1861 cgatcaaacg tttggcggcg taaatagtgt ttttggcgtt ggttaccgct tggcgtttgg
     1921 caggcgcgcc gacgaggatt tcgccgccgt ccaaataagc gataacggac ggcgtggtgc
     1981 gtgcgccttc tgcgttttcg atcactttgg tttgaccgtt ttcggaaatg gccaaacaag
     2041 agttggttgt acctaagtcg ataccgatta cttttgccat gtggataatc ctatttgatt
     2101 ttgcttattt tgagaaatat gttggaacat tttgtcccga tgggctgtaa atagggcggg
     2161 cggcgggctg tttcaagcta cagcatggct ataagtatat aactttatga atatattggt
     2221 tttatatttg atttaataca tttggctcca atgcattcaa gcataatgtt tcaaatggca
     2281 ggcaggttta ttcatagacg atgccggcga gcatttcctg ttcgttcaag ttgccgtact
     2341 ctttttccca gtcgtgtgaa gactcgatga tgtcgcattc tttggaaagg gagacttgtt
     2401 ctgcatccat atctttggcg ttcagtatgt tgaattgttc gcacagggat gcggataaag
     2461 tgatgtcggg ctgtttggct tcagaacggt tttcttggaa ggcaaagcag aatgcggtaa
     2521 atgccgcagc atagataaga tatttgccgg ttttcttcat tttctatcct ttttctgtca
     2581 actcaggatt aaacctatgg aaaatcttaa aaattatgta ttgagtaaga aaaatcataa
     2641 tttaaattta gtttatcata gttgttccgt ttttgggata gctaaggtaa aatatatttc
     2701 atgtttactt tagatgattg aatgaagggg agcggaagga tatttatgga aacctttaaa
     2761 gacagactgg tttttttatg gaaaagcgaa gcgaagcagg caaaaatcgc atccgatatt
     2821 gaaatgacga ttgcgggctt cagcaggata tggaatgaag gcggtctgcc gaagtctgaa
     2881 acattaaaaa aaatcaagca gttgaagggg tgtagtatcg attggctgct gaccggggag
     2941 ggtaatccgt ttccggatga agccccaaaa aaatcccttg cttacgatac tttgggcaat
     3001 gaagtcgata cggacgagtt tgtcttcgtg ccgagatatg atattcgggc ggctgcggga
     3061 tacgggcagt ttgtcgatca tgaggaaccg gtatttacaa tggcgttcag acggcattgg
     3121 attgagaatt atgttacccg cgatacgaaa aacctgtctg taatttccgt caagggggat
     3181 tcgatggagg gggttttgaa tgacggcgat tcgattttgg tcaatcatgg tgaaaatacg
     3241 ccgagggacg gtctgtatgt gttgcggatt aatgaaaatc tgctggttaa acgtttacag
     3301 attgtaccgg gcgggattat caatgtgatt tctgcaaacg aggcttatcc tgcttttgaa
     3361 atcaatttga acgatttgac cgatgatgtg gagattatcg ggcgtgtcga gtggttcggc
     3421 aggacgattt gagtttgggg cttgaaattg caggcggtca aacttatcta ttggaacaat
     3481 tcctttttca aaggcgaagc ctgcttgcct ttgaaggggg tttgagagag aatgcagaaa
     3541 atattatatt aaggaataac accatgtcgg atgaaagccc tattattttt actgacagct
     3601 gctgtgccaa agttgccgat ttgattgccg aagaaaacaa tcccgatttg aaattgcggg
     3661 tttttgtcaa tggcggcggc tgttcgggtt tccagtacgg atttactttt gacgaaatca
     3721 aaaacgacga cgattttgaa attgagaaaa acggtttggt ctttttggtc gatccgatga
     3781 gctatcaata tctggtcggt gcggaaatcg actatacgga aagtttgcag ggttcgcaat
     3841 tcgtcatccg caatccgaat gcggaaacaa cctgcggttg cggatcgtcg ttttccgtat
     3901 gaccgcttgg tttgtgtgat gccgtctgaa cgttcagacg gcatttttac ttttggaaaa
     3961 tatattatcg ggatgaattc acatataatc cgattgtttg aagatgaatc gggtttcccg
     4021 aaaggaacgg gcggaacggt atcaggcgta tttgttccct tatgattgag atgagtaaag
     4081 attaccgaaa cgatttgtac gatgtatatg tttcctaccc gccccaagtg gatcgcgggc
     4141 ttatccggga gtgcctcagg gagaatctcg gcgaggaaaa ggcggaagga ttgatcgaat
     4201 cgctcgattc caaaccgcaa gtgctggttg aggaaaaatg cacttgggcg aaacgggaag
     4261 agttgcacga ttatttcagc tatttgggtt tggatattat tacccggaga tatatggagt
     4321 tggaaacggt cgtgccgccg gaggaaggtg agggcgaagg agagggcgcg gatggggaaa
     4381 tgcccgaata tcttgaactt catggcgggc gggaagatga tatttccgca ccttcgcaac
     4441 ccgaaccgcc gacccgcaat atcaaaccgc tgcttttcgg gctgctgatt gcctttttgg
     4501 gctatctgct cggtaagatt ttttgattgt ccgataaatg ctgtattcgg gattttatat
     4561 atgaaatggt tgaaacgcct gacggtcatt gtcgggactt tttaccgcta tcggctggca
     4621 ggtctgtgtg cttcgctgat gggtagcggt tggatatgcg ctctgctgaa aatgatgccg
     4681 cagtcgtcca aattgaaaaa cgaaccgcct gccgtctgtc tgcgccttgc cttggaaagc
     4741 ctggggccga ttttcatcaa gttcgggcag gttttgtcca cacgccccga tttgattccg
     4801 cacgattacg ccgtcgaact ggcaaagctg caagacaaag tgccgccttt tgacgcgcgg
     4861 ctttcgcgtg aacaaatcga aaaatcgctg ggtcagccca tcgaaaagct gtatgcggaa
     4921 tttgaaaccg agcccatcgc cagcgcgtcc atcgcccaag tacacaaagc ccgcctgcat
     4981 tcgggcgaac aagtggcggt caaagtcttg cgccccaacc ttttgcccgt gatcgaacag
     5041 gatttgtcgc tgatgcgctt tggtgcaggc tgggtcgaac gcttgttttc agacggcaag
     5101 cgtctgaagc cgcgcgaagt ggtggcggag ttcgacaaat atctgcacga cgagttggac
     5161 ttgatgcgcg aagccgccaa tgccagccag ctcggacgca atttccaaaa cagcgatatg
     5221 ctgattgtgc cgaaggtgtt ttacgactac tgcaccagcg acgtgctgac catcgaatgg
     5281 atggacggca cgccggtttc cgacatcgcc aaactcaaag cagacggcat cgatttgcac
     5341 aaactcgccg attacggcgt ggaaatcttt ttcacgcagg tcttccgcga cggttttttc
     5401 cacgcggata tgcaccccgg caatattttg gttgccgccg acaaccgcta catcgccctc
     5461 gatttcggca tcgtcggcac gctgaccgat tacgataaac gctacctcgc catcaactta
     5521 ctcgccttct tcaaccgcga ttaccggcgc gtcgccaccg cccacatcga atcgggctgg
     5581 gtgcctgccg acacgcgtgc ggaagaattg gaagccgccg tccgcgccgt gtgcgaaccg
     5641 gtgttcaaca aaccgatttc gcagatttcc ttcggcttgg tgctgatgcg cctgtttgaa
     5701 gtcagccgcc gcttcaatgt cgaaatccaa ccgcagcttg tgctgctgca aaaaacgctg
     5761 ctcaacatcg aaggcttggg ccgccagctc gatcccgatt tggacttgtg gaaaaccgcc
     5821 aaaccgtttt tggtgaaatg gatgaacggg caggtcggcc ctaaagccct ttggcgcaac
     5881 ctcaaaaacg aagcccccga ctgggcgcaa atcattcctt cattgccgcg caaaatcagt
     5941 gcgttgattg atgaaaaccg ccagcaggaa atgcgtgatg cctatatcca tttggtcaaa
     6001 gtgcagcagc ggcaaagcct gtggctggct gtgattgcgg ttgttttgct gctgattttg
     6061 cttttgaaat aggctttgtc cgaatcatcg cccgactccg cccgtttata aggaaatc
//
LOCUS       DAWGNT010000121         6087 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.121, whole genome shotgun sequence.
ACCESSION   DAWGNT010000121 DAWGNT010000000
VERSION     DAWGNT010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6087)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6087)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6087
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.121"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(53..1456)
                     /gene="mtrE"
                     /locus_tag="WHR98_001527"
     CDS             complement(53..1456)
                     /gene="mtrE"
                     /locus_tag="WHR98_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit MtrE"
                     /protein_id="HEZ2308190.1"
                     /translation="MDTTLKTTLTSVAAAFALSACTMIPQYEQPKVEVAETFKNDTAD
                     SGIRAVDLGWHDYFADPRLQKLIDIALERNTSLRTAVLNSEIYRKQYMIERNNLLPTL
                     AANANDSRQGSLSGGNVSSSYKVGLGAASYELDLSGRVRSSSEAALQGYFASTANRDA
                     AHLSLIATVAKAYFNERYAEEAMSLAQRVLKTREETYKLSELRYKAGVISAVALRQQE
                     ALIESAKADYAHAARSREQARNALATLINQPIPDDLPAGLPLDKQFFVEKLPAGLSSE
                     VLLDRPDIRAAEHALKQANANIGAARAAFFPSIRLTGSVGTRSAELGGLFKSGTGVWS
                     FAPSITLPIFTWGTNKANLDVAKLRQQAQIVAYESAVQSAFQDVANALAAREQLDKAY
                     DALSKQSRASKEALRLVGLRYKHGVSGALDLLDAERSSYAAEGAALSAQLTRAENLAD
                     LYKALGGGLKRDTQTDK"
     gene            complement(1511..4714)
                     /gene="mtrD"
                     /locus_tag="WHR98_001528"
     CDS             complement(1511..4714)
                     /gene="mtrD"
                     /locus_tag="WHR98_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MtrD"
                     /protein_id="HEZ2308191.1"
                     /translation="MAKFFIDRPIFAWVISIFIIAAGIFGIKSLPVSQYPSVAAPTIT
                     LHATYPGASAQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENL
                     AQVEVQNKLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSDVQSTEEMNDYAQRNI
                     VPELQRIEGVGQVRLFGAQRAMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIG
                     SLPAVRGQTVTATVTAQGQLGTAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSS
                     TRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEIS
                     IEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLT
                     MFAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISV
                     FVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCATMLKTIPKGHHEEKKG
                     FFGWFNKKFNSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQ
                     GFVMVSVQLPAGATQERTNATLAQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFA
                     ILKDWNERTAPGSDAVAIAGKLTGMMMGTLKDGFGIAVVPPPILELGNGSGLSINLQD
                     RNNTGHTALLAKRNELIQKMRASGLFDPSTVRAGGLEDSPQLKIDINRAAAAAQGISF
                     ADIRTALASALSSSYVSDFPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPL
                     STIATVSWENGTEQSVRFNGYPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLEW
                     GGQSREEAKGGSQTLILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVT
                     GRNLFEGLLGSVPSFANDIYFQVGFVTVMGLSAKNAILIIEFAKDLQAQGKSAVEAAL
                     EAARLRFRPIIMTSFAFILGVVPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVP
                     LFYVVVRKFFKETAHEHEMAIRHASEAGITGSNDSQH"
     gene            complement(4726..5964)
                     /gene="mtrC"
                     /locus_tag="WHR98_001529"
     CDS             complement(4726..5964)
                     /gene="mtrC"
                     /locus_tag="WHR98_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit MtrC"
                     /protein_id="HEZ2308192.1"
                     /translation="MAFYAFKAMRAAALAAAVALVLSSCGKGGDAAQGGQPAGREAPA
                     PVVGVVTVHPQTVALTVELPGRLESLRTADVRAQVGGIIQKRLFQEGSYVRAGQPLYQ
                     IDSSTYEAGLESARAQLATAQATLAKADADLARYKPLVAAEAVSRQEYDAAVTAKRSA
                     EAGVKAAQAAIKSAGINLNRSRITAPISGFIGHSKVSEGTLLNAGDTTVLATIRQTNP
                     MYVNVTQSASEVMKLRRQIAEGKLLAADGVIAVGIKFDDGTVYPEKGRLLFADPAVNE
                     STGQITLRAAVPNDQNILMPGLYVRVLMDQVAVDNAFIVPQQAVTRGAKDTVMIVNAQ
                     GGMEPREVTVAQQQGTNWIVTSGLKDGDKVVVEGISIAGITGAKKVTPKEWAPSENQA
                     AAPQSGVQTASEAKTASEAE"
BASE COUNT         1369 a         1716 c         1636 g         1366 t
ORIGIN      
        1 aaatgccgtc tgaaacctta tcgtttcaga cggcatttta ttgcccgacc ggttatttgt
       61 cggtttgggt atcccgtttc aatccgccgc cgagtgcctt gtacaaatcg gcaaggtttt
      121 cggcgcgggt cagttgtgcc gacaaagccg caccctccgc cgcatagctg ctgcgttccg
      181 catcgagcaa gtcgagcgcg ccggatacgc cgtgcttgta acgcaggccg accaagcgca
      241 acgcttcttt agaggcgcgg ctttgtttgc ttaaagcgtc ataggcttta tccagctgct
      301 cgcgcgccgc caatgcgttt gccacgtctt gaaatgcgga ttggacggcg gattcatagg
      361 caacgatttg tgcctgttgg cgcagcttgg ctacatcaag gttcgccttg ttcgtacccc
      421 aggtaaaaat cggcagggta atagacggcg caaacgacca aacgcccgtg ccgcttttga
      481 acagcccgcc caattcggca gaacgcgtac cgacgcttcc ggtcaggcgg atggatggga
      541 aaaaggcggc gcgtgccgca ccgatattgg cgtttgcctg tttgagcgcg tgttcggcag
      601 cacggatatc gggacggtcg agcaatactt cggaactcaa accggccggc agtttttcaa
      661 caaaaaactg cttgtccagc ggcaaaccgg cgggcaggtc gtcgggtatc ggttggttaa
      721 tcaaggttgc caaggcattg cgcgcctgtt cgcggctgcg cgcggcatgg gcataatcgg
      781 ctttggcaga ttcgattagg gcttcctgct gacgtagggc gacggcggaa atcacgcctg
      841 ccttgtaacg taattcggac agcttgtagg tttcctcgcg cgttttcaaa acacgttgcg
      901 ccaaagacat cgcttcttcg gcgtaacgtt cgttgaaata ggctttggca acggtggcaa
      961 tcaggctcaa atgtgccgca tcgcggttgg cggtgctggc gaaatagcct tgcagtgccg
     1021 cctcgctgct gctgcgtaca cgcccggaca gatcgagttc gtaagatgcc gcacccagtc
     1081 cgactttgta gctgctgctt acattgccgc cgctcaagct gccttggcgc gagtcgttcg
     1141 cattggcggc aagcgtgggc aggaggttgt tgcgctcaat catgtattgt ttgcggtaga
     1201 tttcgctgtt caatacggcg gtacgcaaac tggtattgcg ctcgagtgcg atgtcgatca
     1261 gcttttgcag gcgcgggtcg gcaaaatagt catgccaacc taaatcgacg gcgcggatgc
     1321 cgctgtcggc ggtatcgttt ttgaacgttt cggcaacttc gactttgggc tgctcgtatt
     1381 ggggaatcat ggtgcaggcg gataatgcga aggctgctgc aacagaagtc aaggtggttt
     1441 tcaatgtagt atccataaaa aagtcctgat gccgtctgaa aacccgtggg cgttcagacg
     1501 gcatggttgc ttaatgttgg ctgtcgttcg aaccggttat gcccgcttct gatgcatgtc
     1561 tgatcgccat ttcatgctcg tgtgcagttt ctttgaagaa tttgcgcacc accacataga
     1621 aaagcggaac aaggaacacg gacaagagcg tgccgatgag catcccccag aatacggttg
     1681 taccaatggc gcgctggctg gcagaacttg caccgccggc aatatacagg ggaaccacgc
     1741 ccaaaataaa ggcgaacgag gtcatgataa tcggacggaa acgcaggcgg gctgcttcca
     1801 aagcggcttc aaccgcgctt ttcccttgcg cttgaaggtc tttggcaaac tcgataatca
     1861 aaatcgcgtt tttcgcactc aaacccatca cggtaacgaa accgacttga aagtagatgt
     1921 cgttggcgaa cgagggaacg ctgcccaaca gtccttcaaa caggttgcgc ccggttacgc
     1981 ccgcagccgc accgatcaaa cccaacggaa tcacaaggat gaccgccagc ggaatcgacc
     2041 agctttcata aagcgcggca agtaccaaaa atacggctgc aaccgccaaa ccgtacaaaa
     2101 tcagggtttg cgagccgcct tttgcctctt cgcgcgactg tccgccccac tccaggctgt
     2161 aaccgccgcc caattcgtca accatttttt gaaccgccgc catagcctgc ccggtggaaa
     2221 cgccggttgc aggcgaagcg gacagcttca tcgaaggata accgttgaag cgtacgctct
     2281 gttccgtacc gttttcccaa gaaacagtag caatggtgga aagcggtacg gcgacgccgg
     2341 atttgttcgg cacggtcagg ttcaaaatat cggcaggctg catacgggca tcctcgtcgg
     2401 cctgcaccat cacgcgttgc agacggcctt ggttcgggaa gtcgctgaca taagacgaac
     2461 tcagcgcact tgccaatgcg gtgcggatgt cggcaaacga aatgccttgc gccgccgcgg
     2521 cggcacggtt gatgtcgatt ttcaactgcg gcgagtcttc caaaccgcca gcacggacgg
     2581 tgctggggtc aaacaaaccg ctggcacgca ttttctgaat caactcgttg cgcttcgcca
     2641 gcaatgcggt atggccggta ttattgcggt cttgcaggtt gatgctcagg cccgaaccat
     2701 tgcccaactc cagaatcgga ggcgggacga cggcgatgcc aaaaccgtct ttaagcgtcc
     2761 ccatcatcat acccgtcagc ttgccggcaa tcgcaacggc atcgctgccg ggcgcggtac
     2821 gctcgttcca atctttcaat atggcaaaac ccatcgccat attctgaccg ctgcccgaaa
     2881 agctgaagcc ggaaacggta atgatgtttt ctatttcagg aatgcttttc gccagttggg
     2941 taacttgcgc caaagtcgca ttggtgcgct cttgggtcgc tcctgcaggc agttgcacgc
     3001 tgaccatgac gaagccttgg tcttcggtcg gcaggaatga agtcggcagg cgcataaaca
     3061 ggaacacgcc cacaaccgcc aagccgatat agacaaccat catgcggaaa gtcttacgca
     3121 gcactttggc aacccggcct tcgtaaccgt gcgtccaact gttgaatttc ttgttaaacc
     3181 agccgaagaa accttttttc tcttcgtgat gccctttcgg gattgtcttc aacattgtgg
     3241 cacacaaagc aggggtaagg gtcagcgcaa ggaaggcgga gaatgcgatt gatgacgcca
     3301 tcgtcagggc aaactgtttg taaatattgc ccgtcgcccc gctgaacatc gccaacggta
     3361 cgaacacgga aatcagaacg gcggtaatac cgatgaccgc gcccgaaatc tgacccatcg
     3421 cttttttggt cgcttctttg ggcggcaagc cttcacccgc cataatgcgc tcgacgtttt
     3481 caaccaccac aatcgcgtca tcgaccacga tgccgatgac caaaaccatc gcaaacatgg
     3541 tcagtacgtt aatcgacatg cccatataag agatgaaggc gaaaccgccc aacagcgaaa
     3601 tcggtacgac gatggtcgga atcagcgtat aacggatgtt ttgcaggaag agatacatta
     3661 cgacaaacac cagcaccatc gcttcgatta aagtgtgaat cactttttca atcgaaattt
     3721 cgacgaattt ggaagtatcg taaggggttt tccagctcat accctgagga aagtattttt
     3781 ccaacgtcgc catgcgttct ttaaccgcct ttgccgtcgc catcgcattg ccgctgttgg
     3841 acagcatcac cgccataccg gtggtattta caccgttcag acgggttgag gaagaatagt
     3901 cttccatacc cagtccgacc cttgccacat ccttcaggta aacattagaa ccgtcggtat
     3961 tggcgcggag gatgacgttg ccgaattctt ctgccgtacc caactgccct tgcgccgtta
     4021 cggtagccgt aaccgtctgt ccgcgaacgg caggaagcga accgatagaa cccgctgaaa
     4081 tctggacgtt ctgggcggac agcgcactgc cgatatcggc aaacgacaaa ttgtagtttt
     4141 gcagtttctt aggatcaacc caaatccgca tcgcgcgttg cgcgccgaac aggcgtacct
     4201 gccccacgcc ttcgatacgc tgcagttcgg gaacgatatt acgctgcgcg tagtcgttca
     4261 tctcttcggt tgactgcaca tccgacgaaa gcatcacaat catcaggaaa ttggaacgcg
     4321 ccttggatac ggttacgccg tattgctgga cggttgccgg cagcgtgctc aatacttcgg
     4381 aaagcttgtt ctgcacttcc acctgcgcca gattctcgtc ggtatcgggc gtaaaggtca
     4441 ggctcacgct gccgctgccg ctcgaatcgg cggaagtgga catataatcc aaaccttcca
     4501 cgccgttcat attccgctcg ataacggaaa gtacgctgtc ttccatcact tgtgcggacg
     4561 cgcccggata agtggcgtgc aaagtaatgg tcggggcggc gacagacgga tattgcgaaa
     4621 caggcaggct tttgatgccg aaaatacccg ccgcaataat gaaaatcgaa ataacccacg
     4681 caaaaatagg gcggtcgata aaaaatttag ccatcgatgc cttccttatt ccgcttcaga
     4741 agcagttttg gcttcagatg ccgtctgaac gccggattga ggcgcggcgg cttggttttc
     4801 agacggcgcc cattctttgg gcgttacctt tttcgcaccc gttataccgg cgatactgat
     4861 gccttccaca accaccttgt ccccgtcctt cagacccgac gtaacaatcc aattcgtacc
     4921 ctgctgttgc gcaaccgtta cctcgcgggg ttccataccg ccttgggcat tcacaatcat
     4981 cacggtatct ttcgcaccgc gcgttactgc ctgctgtgga acgatgaatg cattatccac
     5041 cgccacttgg tccatcagca cgcgcacata caggccgggc atcaggatat tctgatcgtt
     5101 cggtacggcg gcgcgcaggg taatctgacc ggtcgattcg ttgacggccg gatcggcaaa
     5161 cagcaggcgg cctttttcag ggtaaactgt gccgtcgtca aatttgatgc cgaccgcaat
     5221 cacaccatcc gccgccagca gtttgccttc ggctatctga cggcgcaatt tcatcacttc
     5281 ggatgcagac tgggtaacgt tcacatacat cggattggtt tggcggatgg ttgccagcac
     5341 ggtcgtatcg cccgcattca acagcgtacc ttcggaaact ttggagtgac cgataaagcc
     5401 ggaaatcggc gcggtaatgc gcgaacggtt cagattgatg ccggcagatt tgattgccgc
     5461 ctgtgctgct ttgacacctg cctcggcaga acgtttcgcc gttaccgcag catcgtattc
     5521 ctgccggctg acggcttcgg cggcaaccaa aggcttgtat cgcgccaaat ccgcatccgc
     5581 tttggcaagc gttgcctgag ccgttgccag ttgcgcgcgc gcgctttcca gacctgcttc
     5641 ataagtggaa ctgtcgatct gatacagcgg ctgtccggca cggacataac tgccttcttg
     5701 gaacaggcgt ttttggatga tgccgccgac ttgggcgcgg acatcggcgg tacgcagcga
     5761 ttccaaacgc cccggcaact cgacggtcaa cgcgacggtt tgcggatgga cggttacgac
     5821 accgacgacg ggcgccggtg cttcccgacc cgcaggctgc ccgccctgcg ccgcgtctcc
     5881 gcctttaccg caagacgaca gtaccaatgc aacggcggca gccaacgcgg ccgcacgcat
     5941 cgccttaaaa gcataaaaag ccattattta tcctatctgt ctggtttgat gtaaagggtt
     6001 ttgccaatca acaggcattc ttatagtgga ttaacaaaaa ccagtacggc gttgcctcgc
     6061 cttagctcaa agagaacgat tctctaa
//
LOCUS       DAWGNT010000122         6063 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.122, whole genome shotgun sequence.
ACCESSION   DAWGNT010000122 DAWGNT010000000
VERSION     DAWGNT010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6063)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6063)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6063
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.122"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            20..403
                     /locus_tag="WHR98_001530"
     CDS             20..403
                     /locus_tag="WHR98_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEZ2308193.1"
                     /translation="MEPSSYAAEKKGKGGIRRVINAFGYSIDGIAAAYRYEAAFRQVL
                     WLNVLLVCAAFFWVSETAVRLPLIIASFVSVIVELFNTAVEAAVDHTSTEKHELAKRA
                     KDAGSAAQLFAMLMLAAVWLSALFG"
     gene            696..1169
                     /locus_tag="WHR98_001531"
     CDS             696..1169
                     /locus_tag="WHR98_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEZ2308194.1"
                     /translation="MKKLLAAVMMAGLAGAVSAAGVHVEDGWARTTVEGMKIGGAFMK
                     IHNDEAKQDFLLGGSSPVADRVEVHTHINDNGVMRMREVEGGVPLEAKSVTELKPGSY
                     HVMFMGLKKQLKEGDKIPVTLKFKNAKAQTVQLEVKTAPMPAMNHGHHHGEAHQH"
     gene            1295..2398
                     /gene="mnmA"
                     /locus_tag="WHR98_001532"
     CDS             1295..2398
                     /gene="mnmA"
                     /locus_tag="WHR98_001532"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEZ2308195.1"
                     /translation="MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWED
                     DDNDEYCSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDV
                     LCNAEIKFKCFLDYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLK
                     PFQLERAIFPLGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTD
                     NGKMVTPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDH
                     PLLYTRSLVMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELVFDEPQW
                     AVTPGQSAVLYEGDVCLGGGIIQSTDKPVIITR"
     gene            2469..4139
                     /locus_tag="WHR98_001533"
     CDS             2469..4139
                     /locus_tag="WHR98_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEZ2308196.1"
                     /translation="MKKIWLDSYEKGVNAEIDITQYGSVSDVFCQSVKKFAGQPAFQN
                     MGKTLTYAETGKLATDFASYLQNVLKLPRGERVAIMLPNVLQYPIALFGILQAGLVAV
                     NTNPLYTPRELEHQLKDSGATAIIVLENFANTLELVLPRTQIKHVIVASVGEMFGLLK
                     GSLINFVIRKIKKMVPEYRIRETISFQTALKEGAKHVFQPVALNREDTALLQYTGGTT
                     GVAKGAVLSHGNICANMLQAKEWIKNQLREGKETVIAALPLYHIFALTVNLMIFANAG
                     SKIVLITNPRDMKGFIGELKKQRVNVFIGVNTLFNAMVNRPDFAEVDFSGLRLTLGGG
                     MATQKAVAEKWKKITDTPIVEAYGLTEASPGVCCNPLNIESYSGSIGLPVSSTEVELR
                     DANGKEVPVGQPGELWVRGPQVMKGYWNRPEETAKAIDARGFLETGDIAVMDEKGWLK
                     LVDRKKDLVVVSGFNVYPNEIEEVIAHHGKVMEVACIGVPDEKTGEALKVFVVKKDPS
                     LTKEELIAFCRTELTAYKVPKNIEFRDELPKSNVGKILRRELRQSTGK"
     gene            4251..5885
                     /locus_tag="WHR98_001534"
     CDS             4251..5885
                     /locus_tag="WHR98_001534"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEZ2308197.1"
                     /translation="MTKFIFVTGGVVSSLGKGIAAASIAAILESRGLNVTMLKLDPYI
                     NVDPGTMSPFQHGEVFVTDDGAETDLDLGHYERFIDSTMTRRNSFSTGQVYENVIAKE
                     RRGDYLGGTVQVIPHITDEIKRRIHEGAAGYDVAIVEIGGTVGDIESLPFLEAIRQMR
                     SQLGRSNTLFAHLSYVPYIAAAGEIKTKPTQHTVKEMLSIGLQPDILICRMDREMPAD
                     ERRKIALFCNVEERAIVGSYDVDSIYECPEMLHNQGIDSIITEQLQLNVQQADLTAWK
                     KIVHAIQNPKHTVKIAMVGKYVDLTESYKSLIEALKHAGIHTETDVQITFVDSESIEK
                     NNGDVSMLKDMDAILVPGGFGSRGVEGKIAAVRYARENNVPYLGICLGMQIALIEYAR
                     DVAGLKGANSTEFDLKCAAPVVALIDEWQTADGSVETRDESADLGGTMRLGAQEVELK
                     AGSLAAKIYGSEHIRERHRHRYEVNNNYVPTLEQAGLVIGGVSAGRERLVETIELPNH
                     PWFFACQFHPEFTSNPRKGHPLFTAFVKAALNNKKA"
BASE COUNT         1587 a         1622 c         1539 g         1315 t
ORIGIN      
        1 acattttgaa aggataccga tggaaccttc ttcttacgcg gcagaaaaaa aaggcaaagg
       61 cggcatcagg cgcgtcatta acgcattcgg ctattcgata gacggcatcg ccgccgccta
      121 ccgttacgaa gcggcattcc gtcaggtttt gtggctgaac gtactgctgg tgtgcgcggc
      181 atttttttgg gtttccgaaa ccgccgtccg cctgccgttg attatcgcgt cttttgtgtc
      241 ggtcattgtc gaactgttca acaccgccgt cgaagctgcc gtcgatcata cttcgaccga
      301 aaaacacgag ctggccaaac gcgccaaaga cgcaggttct gccgcacaat tgttcgcgat
      361 gctgatgttg gcggcggttt ggctgtctgc cctgttcggg taaaacgctt gcagcaggat
      421 ttgtaatcct ttaggattag tatgtggtat ttattattca cttaatctac atcaaatttc
      481 caggcagtat ttgtatgtat agtggattaa caaaaatcag gacaaggcga cgaagccgca
      541 gacagtacaa atagtacgga accgatccac ttggtgcttc agcaccttag agaatcgttc
      601 tctttgagct aaggcgaggc aacgctgtac tggtttttgt taatccgcta taagattaag
      661 cacattcccc gtctgatatt ataaggagca gaaagatgaa aaaattattg gcggccgtga
      721 tgatggcagg tttggcaggc gcggtttccg ccgccggagt ccacgttgag gacggctggg
      781 cgcgcaccac cgtcgaaggt atgaaaatag gcggcgcgtt catgaaaatc cacaacgacg
      841 aagccaaaca agactttttg ctcggcggaa gcagccccgt tgccgaccgc gtcgaagtgc
      901 atacccacat caacgacaac ggcgtgatgc ggatgcgcga agtcgaaggc ggcgtgcctt
      961 tggaagcgaa atccgttacc gaactcaaac ccggcagcta tcatgtgatg tttatgggtt
     1021 tgaaaaaaca attaaaagag ggcgataaaa ttcccgttac cctgaaattt aaaaacgcca
     1081 aagcgcaaac cgtccaactg gaagtcaaaa ccgcgccgat gccggcaatg aaccacggtc
     1141 atcaccacgg cgaagcgcat cagcactaat ctgctgaaaa tatttgaaat gccgtctgaa
     1201 aaagcccggg ctttcagacg gcatttttat gactgccttt aaaatgtgtt aaaatccgcc
     1261 tttaaaaacc gccgtttcca accatattct acgcatgaat acgacagcaa acccttccaa
     1321 tatcatcgtc gggctctccg gcggtgtcga ttcttccgta accgccgccc tgctcaagca
     1381 gcagggttat caagtgcgcg gtgtgttcat gcagaactgg gaagacgacg acaacgacga
     1441 atattgcagc atcaaacagg attcgttcga tgccatcgcc gttgccgata ttatcggcat
     1501 cgatatcgac atcgttaatt tcgccgcgca atataaagac aaagtctttg cttattttct
     1561 tcaggaatac agtgcggggc gcacgccgaa tcccgatgtg ttgtgcaacg ccgaaatcaa
     1621 attcaaatgc tttttggatt acgccgtagg gcagggcgcg gataccatcg ccaccggaca
     1681 ctatgcgcgc aaagaagtcc gcaacggcgt gcattacctg ctcaaaggtt tggatcgaaa
     1741 caaagaccaa agctatttcc tctaccgcct caagcctttc caactcgagc gcgcgatttt
     1801 tccgttgggc ggtttggaaa aacccgaagt ccgccgcctt gccgccgagt tcaaactgcc
     1861 aaccgctgcc aaaaaagaca gcacgggcat ctgcttcatc ggcgaacgtc cgtttcgcga
     1921 gttcctgcag aaatacctgc cgaccgacaa cggtaaaatg gttacgcccg aagggaaaac
     1981 cgtcggcgaa cacgtcgggc tgatgttcta cacgctcgga cagcgcaaag gtttgggcat
     2041 tggcggtgcg ggcgaaccgt ggtttgttgc ggctaaagat ttgacgaaaa acgaactgat
     2101 tgtcgtacaa ggacacgacc atccgctgct ctatacccgc agccttgtga tgaacgattt
     2161 gagtttcacg ctgcccgaac gcccgaaagc agggcgttat acctgtaaaa cgcgttaccg
     2221 tatggcggac gcgccttgtg agttgcgcta tttggatgaa gaaaccgccg agctggtgtt
     2281 tgacgaaccg caatgggcgg taacgcccgg tcaatccgcc gtgctgtatg agggcgatgt
     2341 ctgcttgggc ggcggcatta tccaatcaac cgacaaaccc gtcatcatca cgcgataaag
     2401 gtaatgccgt ctgaaacggt tttcagacgg cattgttccg ctcaattcca ctttaaagac
     2461 cgatacctat gaaaaaaatc tggttagaca gctacgagaa gggcgtgaat gccgaaatcg
     2521 acatcacgca atacggttcc gtcagcgatg tattttgcca aagtgtcaag aaatttgccg
     2581 gccaacctgc ttttcaaaac atgggcaaga cgctgactta tgccgaaacc ggcaaactgg
     2641 caacagattt tgcttcttat ctgcaaaacg tcctgaagct gccgcgcggc gaacgtgttg
     2701 ccattatgct gcccaacgta ttgcaatacc cgattgccct tttcggcatt ttgcaggcag
     2761 gtttggtagc ggtgaacacc aatccgctct ataccccgcg cgagctggag catcagttga
     2821 aagacagcgg cgcgaccgcc atcatcgttt tggaaaattt cgccaacacg ctggagctgg
     2881 tgctgccgcg cacgcagatc aaacacgtca tcgtagcctc cgtcggcgaa atgttcgggc
     2941 tgcttaaagg ttcgctgatc aatttcgtca tccggaaaat caagaaaatg gtgcccgaat
     3001 accgtattcg ggaaaccatt tcctttcaga cggcattgaa agagggggcg aagcacgttt
     3061 tccaacctgt cgcattaaac cgcgaagata ccgcgctgtt gcaatacacg ggcggcacga
     3121 caggtgttgc caaaggggcg gtgctgagcc acggcaacat ctgcgccaat atgcttcagg
     3181 caaaagaatg gattaaaaac cagttgcgtg agggaaaaga aaccgttatc gccgccttgc
     3241 cgctgtacca tatttttgcc ttaaccgtga atctgatgat ttttgccaat gccggctcga
     3301 aaattgtcct gattaccaac ccgcgcgata tgaaaggctt tatcggagaa ctgaaaaaac
     3361 agcgggttaa tgtatttatc ggcgtgaaca cgctgtttaa cgcgatggtt aaccgtcctg
     3421 attttgccga agtcgatttt tcaggattgc ggctgacttt gggcggcggt atggcgaccc
     3481 aaaaagccgt tgccgaaaaa tggaaaaaaa tcaccgacac gcccatcgtc gaagcctacg
     3541 gtctgaccga agccagcccc ggcgtgtgct gcaacccctt aaacatcgaa tcatacagcg
     3601 gcagcatcgg tttgcccgtc tcgtccaccg aagtcgaact gcgcgacgca aacggcaaag
     3661 aagtccccgt cgggcagccg ggcgaattgt gggtgcgcgg cccgcaagtc atgaaaggct
     3721 attggaaccg tcccgaagaa accgctaaag ccatagacgc gcgcggcttc ttggaaaccg
     3781 gcgatattgc cgtcatggac gaaaaaggct ggttgaagct ggtcgatcgt aagaaagacc
     3841 tcgtcgttgt ttccggattc aatgtttatc cgaacgaaat cgaggaagtc atcgcgcatc
     3901 acggcaaagt catggaagtc gcctgtatcg gcgttcccga cgaaaaaacc ggcgaggcac
     3961 tcaaagtatt cgtcgtcaaa aaagacccgt cattgaccaa agaagaactt atcgcctttt
     4021 gccgcaccga attaaccgca tataaagtac cgaaaaatat cgaattccgc gacgagttgc
     4081 ccaagtccaa cgtcggcaaa atcctgcgcc gcgagttgcg gcaaagtacc gggaaataaa
     4141 gaaaagatgc cgtctgaaaa cagccgtcca ccgttcagac ggcatccgtc cgtttgccag
     4201 aaccgcgcgc ttcacgttaa aatcacgcat tccaacatgg gtattccatc atgaccaaat
     4261 tcattttcgt aaccggcggc gttgtctcct cactgggtaa aggtatcgcc gccgcttcta
     4321 ttgccgccat cctcgaatcg cgcggcttga acgttaccat gctcaagctc gatccttata
     4381 tcaacgtcga tcccggcacg atgagcccgt tccaacacgg cgaagtgttc gtaaccgacg
     4441 acggcgcgga aaccgacctc gacttgggac actacgaacg tttcatcgat tccacgatga
     4501 cccgccgcaa cagcttcagc acggggcagg tgtacgaaaa cgtcatcgcc aaagaacgac
     4561 ggggcgacta cctcggcggc acggttcaag tcattccgca cattaccgac gaaatcaaac
     4621 gccgcatcca cgaaggcgcg gcaggttatg atgtggcgat tgtcgaaatc ggcggcacgg
     4681 tcggcgacat cgaatcgctg ccgtttttgg aagccatccg ccaaatgcga agccagttgg
     4741 gacgcagcaa caccctgttc gcccacttga gctacgtccc ctacatcgcc gccgccggcg
     4801 aaatcaaaac caaaccgacc cagcatactg ttaaagaaat gttgagcatc ggtttgcaac
     4861 cggacatcct gatctgccgt atggacagag aaatgcctgc ggacgagcgc cgtaagattg
     4921 cattgttctg taacgttgaa gaacgtgcca tcgtgggcag ttacgacgtg gacagcattt
     4981 acgaatgccc tgaaatgctg cacaaccaag gcatcgacag cattattacc gagcagttgc
     5041 agcttaatgt gcagcaggcg gatttgaccg cgtggaaaaa aatcgtccac gccatccaaa
     5101 acccgaaaca caccgtcaaa atcgccatgg tcggcaaata cgtcgatttg accgagtcct
     5161 acaaatcgct gatcgaagcc ttgaaacacg caggcattca caccgaaacc gacgtacaaa
     5221 ttacctttgt tgacagcgaa agcatcgaga aaaacaacgg cgacgtttct atgcttaaag
     5281 atatggacgc catcctcgtt cccggcggtt ttggttcgcg cggcgtggaa ggcaaaatcg
     5341 ccgctgtgcg ctatgcccgc gaaaacaacg tgccatactt gggcatctgc ctcggtatgc
     5401 agattgcgct gatcgaatac gcccgcgacg tggcaggttt gaaaggtgcg aattccaccg
     5461 agttcgacct caaatgcgcc gcccccgtcg ttgccctgat tgacgaatgg caaactgccg
     5521 acggcagcgt cgaaacccgc gacgaatccg ccgatttggg cggcaccatg cgtttgggcg
     5581 cgcaagaggt tgagttgaaa gcaggcagcc tcgccgccaa aatctacggc agcgaacaca
     5641 tccgcgaacg ccaccgccac cgctacgaag tcaacaacaa ctacgttcct acgctggaac
     5701 aggcaggttt ggtcatcggc ggcgtatccg ccggacgcga acgcttggtc gaaaccatcg
     5761 aactgccgaa ccatccttgg ttcttcgcct gccagttcca ccccgagttt acctccaatc
     5821 cgcgcaaagg gcatcctttg ttcaccgcgt ttgtcaaagc tgcgttgaac aataaaaaag
     5881 cctgataaag cgttacttga tgatcaaaat gccgtctgaa agcctgaatg aagactttca
     5941 gacggcattt tcgcaaatcg gggattataa aagccatcaa tttaattttt atggttttat
     6001 ctaatattga ccaactgaat attgttaagc ggggcgtgaa acttaagttg agacctttgc
     6061 aaa
//
LOCUS       DAWGNT010000123         6021 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.123, whole genome shotgun sequence.
ACCESSION   DAWGNT010000123 DAWGNT010000000
VERSION     DAWGNT010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6021
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.123"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(47..970)
                     /gene="truB"
                     /locus_tag="WHR98_001535"
     CDS             complement(47..970)
                     /gene="truB"
                     /locus_tag="WHR98_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEZ2308198.1"
                     /translation="MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFRAEKAGHT
                     GVLDPLATGLLPVCFGEATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIAAARAD
                     ISLAEFQTACQALTGNIRQVPPMFSALKHEGKPLYEYARKGIVIERKPRDITVYAIDI
                     AEFDSPKAVIDVRCSKGTYIRTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEA
                     LANLDETERDSLLLPCDVLVAHFPQTVLNDYAVHMLQCGQRPRFDEDLTSDTPVRVYT
                     ENGRFVGLAEYQKEICRLKALRLMNTAVSAA"
     gene            complement(1003..1374)
                     /gene="rbfA"
                     /locus_tag="WHR98_001536"
     CDS             complement(1003..1374)
                     /gene="rbfA"
                     /locus_tag="WHR98_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEZ2308199.1"
                     /translation="MRKPQRGYARQDRVKEQIMRELAELVRTGLKDPRAGFITVNEVE
                     VTRDYSHATVFYTILNQDAREITEEVLEHARGHLRSELAKRIKLFKIPELHFKYDESL
                     ERGLNLSALIDQVAAEKPVED"
     gene            1565..2809
                     /gene="clpX"
                     /locus_tag="WHR98_001537"
     CDS             1565..2809
                     /gene="clpX"
                     /locus_tag="WHR98_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEZ2308200.1"
                     /translation="MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCIEILHED
                     GNDGTSSESVGQTSEEPGKLPTPAEIVANLNDHVIGQEQAKKALAVSVYNHYKRLRHP
                     KAGANVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
                     IITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VASVPPQGGRKHPNQEFINVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSK
                     DENADITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDALINILTEPKNALVK
                     QYQALFGMENVELEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLKGL
                     KKVVVGKAVIEEGREPELVFES"
     gene            complement(2912..4108)
                     /locus_tag="WHR98_001538"
     CDS             complement(2912..4108)
                     /locus_tag="WHR98_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEZ2308201.1"
                     /translation="MQNYLTPNFAFAPMIPERASGSRVWDTEGREYIDFSGGIAVNAL
                     GHCHPALVDALNAQMHKLWHISNIYTTRPAQELAQKLVKNSFADKVFFCNSGAEANEA
                     ALKLARKYARDRFGGGKSEIVACINSFHGRTLFTVSVGGQPKYSKDYAPLPQGITHVP
                     FNDIAALEAAVGEQTCAVIIEPIQGESGILPATAEYLQTARRLCDRHNALLILDEVQT
                     GMGHTGRLFAYEHYGIVPDILSSAKALGCGFPIGAMLATEKIAAAFQPGTHGSTFGGN
                     PMACAVGSRAFDIINAPETLNHVREQGQKLQTALRSLGEQTGVFKQVRGMGLLLGCVL
                     DEAYRGRASEITAAALKHGVMILVAGADVLRFAPSLLLNDEDMAEGLRRLEHALTEFA
                     ATSDNP"
     gene            4512..5012
                     /locus_tag="WHR98_001539"
     CDS             4512..5012
                     /locus_tag="WHR98_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308202.1"
                     /translation="MNAMPQTAAQNETLHTCSIIVDDARDFSPMLLDAGRDDTLISES
                     MIPQIRTVAALIAAERHDFSRSSPAEFTDAADFFAARILVLGVRRFHLDVSLLQILKT
                     ANSRARRFAEKHRLFFTPAQAELSLNKHKNRRLLTVETEHEVENKGNPVANSLAFVRK
                     LHTLPL"
     gene            5097..5651
                     /locus_tag="WHR98_001540"
     CDS             5097..5651
                     /locus_tag="WHR98_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308203.1"
                     /translation="MKKIIASALIATFALAACQDDTQARLEQQQKQIEALQQQLAQQA
                     DDTVYQLTPEAVKDTIPAEAQANGNNGQPVTGKDGQQYIYDQSTGSWLLQSLVGAAAG
                     AFIGNALANKFTRAGNQDSPVARRARAAYHQSAHPNARTSRDLNTRSLRAKQQAAQAQ
                     RYRPTTRPPANYRRPAMRGFGRRR"
     gene            5665..5859
                     /locus_tag="WHR98_001541"
                     /pseudo
     CDS             5665..5859
                     /locus_tag="WHR98_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009348581.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1413 a         1620 c         1628 g         1360 t
ORIGIN      
        1 tatatcaaca cattattcaa acacagcccg tatttttaac cgccgttcag gcggcagata
       61 ccgccgtgtt catcaggcgc aaggctttca gacggcatat ttctttttga tattccgcca
      121 ggccgacaaa gcggccgttt tccgtgtaaa cgcgtaccgg cgtatcggaa gtcaggtctt
      181 catcgaaacg cggccgttgc ccgcattgga gcatatggac ggcataatcg tttaaaacgg
      241 tttggggaaa atgggcaacc aatacgtcgc agggcagcag caggctgtcg cgttctgttt
      301 cgtccaagtt tgccaaggct tcgagcgtgt ggctttgggc gatggtaaag ccggcggttt
      361 cggtgcggcg cagggcggtc aggtgggcga acgtgccgat gtgtttggcg atgtcttcgc
      421 tgagggtgcg gatataggtg cctttgctgc aacgcacgtc gatgacggct ttgggtgagt
      481 caaactcggc aatatcgatg gcgtaaacgg taatatcgcg cggcttgcgt tcgatgacga
      541 tgcctttgcg ggcgtattcg tacagcggtt tgccttcgtg cttgagggcg gaaaacatcg
      601 gcggcacttg gcggatgttg cctgtcaggg cttggcaggc cgtctgaaat tcggctaagg
      661 aaatatcggc gcgtgcggca gcgatgattt cgccttcggc atcacccgtg ctgctggctt
      721 cgccgagttt cagcgtggcg gtgtaggctt tgtcggcatc cagcaggtat tgggcgaact
      781 tggtcgcttc gccgaagcag acgggcaaaa gcccggttgc caaagggtcg agcacgccgg
      841 tatgtccggc tttttcggca cggaacaaac gccgcgcttt ttgcagcgcg gtgttgctgg
      901 aaaggccttc gggtttgtcc aagagcaaaa caccgttgac ggcacgtttt tggggtttgc
      961 ctgtattcat ggttcgatgt tcggacggca tgggcatatc cgtcagtctt caaccggttt
     1021 ttccgccgct acttggtcga taagggcgga caggttcaaa ccgcgttcca aggattcgtc
     1081 gtatttgaaa tgcagttcgg ggattttgaa cagcttgatg cgtttggcca attcgctgcg
     1141 gaggtgtccg cgcgcgtgtt ccagcacttc ttccgtaatt tcgcgcgcgt cttggtttaa
     1201 aatggtgtag aacacggtgg cgtggctgta atcgcgggta acttcgactt cgttgacggt
     1261 aatgaagccg gcgcgcgggt ctttcagtcc ggtacggacg agttcggcaa gctcgcgcat
     1321 aatttgttct ttgacacggt cttggcgggc atagccgcgt tggggttttc tcatgaatat
     1381 cctcagattt cagatttggt ttcagacggc atttttgccg ccggggcggt tgcgaaaggg
     1441 cgtattatag cctaatcggc gggattttaa ggtaatacat tgataagaac ggatatagtt
     1501 attatacttg gcaacccgaa cggcacgtgc cgttttctgt aacgcataca ttgtaaagaa
     1561 agccatgtcc aacgaaaacc gtacctgttc cttttgcgga aaatccaaat cacacgtcaa
     1621 acatttaatt gagggcgaaa acgcctttat ctgtgacgaa tgcgtctcaa actgtattga
     1681 aatattgcat gaagacggaa atgacggcac gtcttcggaa agtgtcggac agacatcgga
     1741 agagcccggc aagctgccca cgcccgccga aatcgtcgcc aacctcaacg accacgttat
     1801 cggtcaggaa caagccaaga aagccttggc ggtgtcggtg tacaaccatt acaaacgcct
     1861 gcgccacccg aaagccggag ctaatgtcga attgtcgaaa tccaacatcc tgcttatcgg
     1921 cccgaccgga tcgggtaaaa ccctgctggc gcaatctttg gcgcgcaaac tggatgtgcc
     1981 gttcgtgatg gcagatgcaa ccacgctgac cgaagcaggt tatgtcggcg aagatgtcga
     2041 gcaaatcatc accaaactct tgggcaaatg tgatttcgat gtcgaaaaag cccaacgcgg
     2101 catcgtctat atcgacgaaa tcgataagat ttcacgcaaa agcgacaatc cgtccatcac
     2161 gcgtgacgtg tccggcgaag gcgtgcaaca agccttgctg aaactgattg aaggtacggt
     2221 ggccagcgtt ccgccccaag gcggccgcaa gcatccgaat caggaattta tcaacgtcga
     2281 taccaccaac atcctgttta tctgcggcgg cgcgtttgca ggcttggaaa aagtcatccg
     2341 ccagcgtact gaaaaaggcg gtatcggttt cggtgcgtct gttcacagca aggacgaaaa
     2401 tgccgacatt accaagctgt tcggcatcgt cgaaccggaa gatttgatta aattcggtct
     2461 gattccggaa ttaatcggac gtttgcccgt gattgcaaca ctagaagaac tggatgagga
     2521 cgcgctgatt aatattttga ccgagccgaa aaatgctttg gtcaagcagt atcaagcctt
     2581 gttcggtatg gaaaatgtcg agttggaatt tgaagaaggc gcattgcgtt ccatcgcgcg
     2641 tcaggcaatg gagcgcaaaa ccggcgcgcg cggcctgcgt tccatcgtcg aacgctgcct
     2701 gctcgatacc atgtaccgcc tgcctgattt gaaaggcttg aaaaaagtgg tggtcggtaa
     2761 ggcagtcatc gaagagggca gggaaccgga attggtgttc gagtcctgat ggcaaacaaa
     2821 accgcttcgg aacgttgaac cacgtttctg aagcggtttt ttgtttctga tgccgtctga
     2881 agccttcccg ccttcagacg gcatttgagt tttacggatt gtctgatgtc gcggcaaatt
     2941 ccgtcagcgc gtgttccaaa cgtcgcaaac cttccgccat atcctcatcg ttcaacagta
     3001 gcgaaggcgc gaaacgcaat acgtccgcac ccgcaaccaa aatcatcacg ccgtgtttca
     3061 aggcggcggc ggtgatttcg gatgcgcgtc cgcgataggc ttcgtccaac acgcagccga
     3121 gcagcagccc catgccgcga acttgcttaa acacgcccgt ttgttctccc aaagaccgca
     3181 atgccgtctg aagtttctgc ccctgttcac ggacatggtt taaagtttcc ggcgcgttga
     3241 tgatgtcgaa ggcgcggctg ccgaccgcac acgccatcgg gttgccgccg aaagtcgatc
     3301 cgtgcgtgcc cggttggaag gcggcggcaa tcttttctgt cgccagcatc gcgccgatcg
     3361 gaaagccgca gcccaaggct tttgccgaac tcaaaatatc gggaacaatg ccgtaatgtt
     3421 cataggcaaa cagcctgccc gtatgcccca tcccggtttg aacttcgtcc aaaatcaaca
     3481 acgcattgtg ccggtcgcac agacggcgcg cggtttgcaa atattccgca gtggcgggca
     3541 ggatgccgct ttcgccctgt atcggctcga tgatgaccgc gcaggtctgt tcgccgacgg
     3601 cagcttccag cgcggcaata tcgttgaacg gaacgtgcgt aatgccttgc ggcaggggtg
     3661 cataatcctt gctgtatttc ggctgaccgc cgacggacac ggtaaacagc gtgcgtccgt
     3721 ggaaactgtt gatacaggcg acgatttcgc tttttcctcc gccgaaacgg tcgcgcgcgt
     3781 atttcctcgc cagcttcaac gccgcctcat tcgcttccgc gcccgagttg cagaaaaaaa
     3841 ccttgtcggc aaagctgttc ttcaccaatt tttgcgccaa ttcctgcgcc ggacgtgtcg
     3901 tatagatatt ggaaatgtgc cacagcttgt gcatctgcgc gtttaaagca tcgacaaggg
     3961 cagggtggca gtgtcccagc gcattgacgg cgataccgcc tgaaaaatca atatattcac
     4021 gcccttccgt atcccaaacg cggctgcctg aagcgcgttc gggaatcatc ggggcaaagg
     4081 cgaaattggg ggtcagatag ttttgcataa ttgctcctga ttgcggtttt gctcgggatt
     4141 atgcaccgtt tttcaaagcg gataaaggga aattgccgac aatatcgggc agcggtaaaa
     4201 ataaaccgga atattttcaa tcggatagat gaaaaatcaa aaaaatttcg ataaaatgct
     4261 tgaggcgcgg cggcgttttg atttagaatc tccccaatat ttttatcttc agacggcatt
     4321 tcatcatgca aggcaaaaaa tttacaaccg cttattgcta ttggtaccac acagacgtgc
     4381 ggtacttttt tgcgcttgct tgaaatccat cccatacgca aaacaggccg ctcgaaaacg
     4441 gggcggcttt tttgttacct tcacacaggt cgcccgattc ggcaacacac gacagaatca
     4501 ggaaaatgac catgaatgca atgccccaaa ccgccgcaca aaacgaaacc ctgcacactt
     4561 gcagcattat tgtcgatgat gcacgggatt tttcccccat gcttctcgat gcagggcggg
     4621 acgacacact catcagcgaa tcgatgattc cgcaaatccg caccgttgcc gccctgatag
     4681 ccgccgaacg gcacgacttc agccgcagca gccccgccga gtttaccgat gccgccgatt
     4741 tttttgccgc acggattctc gtattgggcg tgcgacgctt ccatctggac gtatcgctgc
     4801 ttcagatttt gaaaaccgcc aacagccgcg cccgccgctt tgccgaaaaa caccgcctgt
     4861 ttttcacacc cgcacaagcc gaattgagcc tgaacaaaca caaaaaccgc cgcctgctga
     4921 ccgtagaaac cgaacacgaa gtcgaaaaca aaggcaaccc agtcgccaac agcctcgcat
     4981 ttgtccgcaa actgcacacc ctgcccctgt aaacatcacg atttgtcggc agaatgcttg
     5041 ccaaaattcc cgacggcgat acaataaaac cgattttcca cccaaacagg acacacatga
     5101 aaaaaatcat cgcctccgcg cttatcgcaa cattcgcact cgccgcctgc caagacgaca
     5161 cgcaggcgcg gctcgaacag cagcagaaac agattgaagc cctgcaacag cagctcgcac
     5221 agcaggcaga cgatacggtt taccaactga ctcccgaagc agtcaaagac accattcctg
     5281 ccgaagcaca ggcaaacggc aacaacgggc aacccgttac cggtaaagac gggcagcagt
     5341 atatttacga ccaatcgaca ggaagctggc tgctgcaaag cctggtcggc gcggcggcag
     5401 gcgcgtttat cggcaacgcg ctggcaaaca aattcacacg ggcgggcaac caagacagtc
     5461 ccgtcgcccg acgcgcgcgt gccgcctacc atcagtccgc acatcccaat gcgcgcacca
     5521 gcagggattt gaacacgcgc agcctccgtg caaaacaaca ggcggcgcag gcgcagcgtt
     5581 accgcccgac aacgcgcccg cccgccaatt accgccgccc cgctatgcgc ggtttcggca
     5641 ggaggcggta aacccggcgt gccaatgccg tctgaagggc tttcagacgg catttttgca
     5701 tttgttaggg gcattgttat gttgccgttt gattttcaga cggcattttg tttccaagcg
     5761 tttgatgtcg ggatggcaat tctgatctac gtgcgttggc agggtggcat tgtcatgccg
     5821 ccgttgggtt ttcagacggc atcatatcga accgtcaggt cgtggggtga gcattcttgc
     5881 ccaccgttgc aagggcggga ttttttggtg aacaggaatg cccaccctgc atctgaaacc
     5941 cttctgcgtc attcccgtgc aggaaggaat ctagatattt gaatttacgg aaattttcaa
     6001 tcgttgccaa agcggaaaag g
//
LOCUS       DAWGNT010000124         6004 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.124, whole genome shotgun sequence.
ACCESSION   DAWGNT010000124 DAWGNT010000000
VERSION     DAWGNT010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 6004)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6004)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6004
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.124"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(52..360)
                     /locus_tag="WHR98_001542"
     CDS             complement(52..360)
                     /locus_tag="WHR98_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308204.1"
                     /translation="MTNNVDLKVPAKRYFTLDELCGLLQISPYGFAQWQHNHGVVVGY
                     GGERYTRLDVVKLLKLQSTFAPYAEGAESGSDGNRPVTLQEIGDGLKDLLADLDKELC
                     "
     gene            complement(344..646)
                     /locus_tag="WHR98_001543"
     CDS             complement(344..646)
                     /locus_tag="WHR98_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002641098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HEZ2308205.1"
                     /translation="MTLTKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEE
                     IKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKLKSMVEHYYDKQR"
     gene            complement(720..3083)
                     /locus_tag="WHR98_001544"
     CDS             complement(720..3083)
                     /locus_tag="WHR98_001544"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEZ2308206.1"
                     /translation="MQFSYSWLKTQADTELSADKLEHLLTMSGLEVEEAETAAPAFTG
                     VVIAEVKSVEKHPDADRLNVTQVDAGTGGLVQIVCGAPNVKAGIKVPCSLPGAVLPGN
                     FKIKPTKMRGVVSDGMLCSTDELGLPDDGVNGLHILPEDAPVGTNIREYLDLDDTLFT
                     LKITPNRADCLSIKGIAREVSALTGCAFRQPEIHTAPITGSRKQPVQINAPADCGRFI
                     SRVIENVNAKAATPDWMKQRLERSGIRSISVLVDIGNYVMLEIGQPMHVFDADKLSGS
                     LHIRRAREGETLECLNEKTVSLSENTLVVADEKGALSLAGLMGGAASAVSDGTQNIVL
                     EAAWFAPEIIAGKSRQYGFGSDSSFRFERGVDYRLQADAIERATELVLQICGGAAGEM
                     VEAQGELPEAKQVGLRLDRLKTVLGVDIPAEQVETILQHLDLQPEKTAEGFRVTAPSF
                     RFDIEIEADLIEEIGRVYGYENIPDDYTSGRLKMLELPETRRPRFAVYNEMAARGYRE
                     VVSYAFVDEQWEQDFAANADPIRLQNPLAAQYAVMRSTLIGGLVEILQNNLNRKQNRV
                     RVFEIARVFSKGSDGRFVQNERIGGLWYGAAMPEQWGGKTRNADFYDIKADVENLLKN
                     KAVEFVKTGHPALHPGRAANIVSDGNVIGFVGELHPKWLQKYDLPQAPLVFEIDMAAV
                     LECGKTRYRAVSKFQPVRRDLAFVMPEAMSHDDLLLVLKGAANKLVQEISVFDVYRGT
                     GLPEGMKSVAVKVILQDMENTLTDEAVEPLIGKLIGAATAAGARLRS"
     gene            complement(3119..3637)
                     /locus_tag="WHR98_001545"
     CDS             complement(3119..3637)
                     /locus_tag="WHR98_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308207.1"
                     /translation="MSEIINLTESGITFNLVKNNLFYIEPYIRKRRQEGIKTVEFIYL
                     QEDNLLFVEAKQSIPNQERSPERFDEYISEIYQKWCNALNVEILGILGREDIKETIMP
                     SAFSNLQWGSIEIKLLLVIPDVPLNYLGQLNELIKQEFNKKDTLRLISLWNISVEVIN
                     RDLAIQKGLASS"
     gene            complement(3644..4708)
                     /locus_tag="WHR98_001546"
     CDS             complement(3644..4708)
                     /locus_tag="WHR98_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEZ2308208.1"
                     /translation="MIKSFWLENFGPISLLKADNLGKINLIIAENSKGKTFILKALYS
                     VLKSHEEAHKGKNIRDFSEELRDKLYWTFQVEEIGDLVTRGKENPNERPLKLSMTLED
                     SSSVLFSFGRTTKKLIKPELYELSPRINANSIFLPPKEVLSLFDVIKKSEEEKRFGFD
                     ATYIDLVKALDIKPTKGRNYPEAAEARKDLEALFGGYVSYNDKKKAWVYEKDRQTFSI
                     NSTAEGVKKIGILDTLLGNRFLSPGSILFIDEPEANLHPKAINQFLEILFSLSKSKLG
                     IQIFMSTHSYFVIKKLCLLARKHSESIPVFMPGKEKEQTTWVQENLQNSMPDNEIIGE
                     SIRLFREEIGVLSPETAWIG"
     gene            complement(4885..5877)
                     /gene="pheS"
                     /locus_tag="WHR98_001547"
     CDS             complement(4885..5877)
                     /gene="pheS"
                     /locus_tag="WHR98_001547"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEZ2308209.1"
                     /translation="MENVNRIVAEGIAAVEAAQDFNALEQIKARYLGKTGELTGLLKT
                     LGQMSPEERKTIGAHINECKNRFQTAFNAKRDALNEAKLQARLAAEALDITLPGRAQE
                     GGSLHPVTLTLQRVVELFHGMGFEVADGPEIEDDFHNFQALNIPANHPARAMQDTFYV
                     ENGDVLRTHTSPIQIRYMLDKKEPPIRIIAPGRVYRVDSDATHSPMFHQAEGLWVEEG
                     VTFADLKAVFTDFIRRFFERDDLQVRFRPSFFPFTEPSGEIDIMGENGKWLEVGGCGM
                     VHPNVLRNVNIDPEKYTGFAFGIGLDRFAMLRYNVNDLRLFFDNDLNFLKQFVK"
BASE COUNT         1515 a         1539 c         1274 g         1676 t
ORIGIN      
        1 ttttttagcg tgtaaaacaa aaccggctgc atacctgcaa ccggcctcaa atcagcacaa
       61 ttccttatcc aaatccgcca acaggtcttt cagaccgtct ccgatttcct gaagcgtaac
      121 cggacggttg ccgtccgaac ccgattccgc accttctgca tacggtgcaa acgtgctctg
      181 caatttcaac agtttcacca catccaaacg ggtgtagcgt tcgccgccgt aaccgacaac
      241 cacaccgtga ttatgctgcc attgcgcaaa accatagggg ctgatttgca acagtccgca
      301 caactcgtcc agcgtgaaat agcgttttgc gggaaccttc aaatcaacgt tgtttgtcat
      361 agtagtgttc caccatgctt ttgagtttct ggctggcatg gaaagttacc acgcggcggg
      421 cggtaatcgg cacttcctcg ccggttttag gattacgacc cgggcgttgc ggcttgtcgc
      481 gcaactggaa atttccgaaa ccggaaattt tgatttcttc gccgcttgcc aaagtgctgc
      541 ggatttcttc aaaaaagagt tcgacgattt ctttggcatc gtttttggtg acgttgctga
      601 ctttgtctac caaaatatcg gccagttctg ctttagtgag agtcatatga ttaccttctg
      661 ttgtaacagt tgtggattat taccaatttt tatttaaaat tcaagcgaat atttattttt
      721 taactgcgaa gccgcgcccc tgccgccgtt gccgcgccaa tcagttttcc gataagcggc
      781 tcgactgcct catccgtcag cgtgttttcc atatcctgca aaatcacttt gaccgccacg
      841 ctcttcatcc cttcgggcag tcccgtgccg cgatacacgt caaacacgct gatttcctgt
      901 accaacttgt ttgccgcgcc tttcaagaca agcagcaaat catcatggct catagcttcc
      961 ggcatcacaa acgccaaatc gcggcgcacc ggctggaatt tcgatacggc ccgatagcgc
     1021 gttttcccgc attccaacac ggccgccata tcgatttcaa ataccagcgg cgcttgcggc
     1081 aggtcgtatt tttgcagcca tttcggatgc agttcgccga caaagccgat gacgttgccg
     1141 tctgaaacga tattggcggc gcgtccggga tgcagggcag gatgtccggt tttaacgaac
     1201 tcgaccgctt tgtttttcaa cagattttcc acatctgcct taatgtcgta aaaatccgca
     1261 ttgcgcgttt tcccgcccca ttgttcgggc attgccgcgc cgtaccacaa gccgccgatg
     1321 cgttcgtttt ggacaaaccg gccgtctgaa cctttgctga acacgcgggc gatttcaaac
     1381 acgcgcacgc ggttttgttt gcggttcagg ttgttttgca aaatttccac caagccgccg
     1441 atgagtgtgg aacgcatcac ggcatactgc gccgccagcg ggttttgcag gcggatgggg
     1501 tcggcgttgg cggcaaaatc ttgttcccac tgctcgtcaa cgaaggcata gctgaccact
     1561 tcgcggtaac cgcgagccgc catttcgttg taaacggcaa aacgcgggcg gcgtgtttcg
     1621 ggcagttcca gcattttcag acggcctgac gtgtaatcgt cggggatgtt ttcatagccg
     1681 taaacgcgtc cgatttcttc aatcaaatca gcctcaattt cgatgtcaaa acggaagctc
     1741 ggcgcggtaa cgcggaagcc ttccgccgtt ttctcgggct gcaggtccaa gtgttgcaaa
     1801 atggtttcca cctgttcggc aggaatgtcc acgcccaaca cggttttcag acggtccaaa
     1861 cgcaatccaa cctgcttcgc ttcaggcaat tcgccttgcg cttccaccat ctcgcctgcc
     1921 gcaccaccgc aaatctgcaa caccaattcg gtagcacgtt caatggcatc cgcctgcaaa
     1981 cggtaatcca cgccgcgctc gaagcggaac gacgaatccg aaccgaaacc gtattggcgc
     2041 gatttgccgg cgatgatttc gggcgcaaac caagccgctt ccagcacgat attttgcgtg
     2101 ccgtctgaaa ccgcgctcgc cgcgccgccc attaagcccg ccaaactcaa cgcgcctttt
     2161 tcgtctgcca cgaccagcgt attttcagac agggaaacgg ttttctcgtt caggcattcc
     2221 agcgtttccc cttcgcgcgc gcggcggatg tgcaggctgc cggaaagttt gtcggcatcg
     2281 aaaacgtgca tcggctggcc gatttccagc attacataat tgccgatgtc caccagcacg
     2341 gaaatactgc ggatgccgct gcgctccaaa cgttgtttca tccaatcggg agtagccgct
     2401 ttcgcattga cattttcaat aacgcggctg ataaaacggc cgcaatcggc aggcgcgtta
     2461 atctgcacgg gctgttttcg actgcccgtg atcggcgcgg tatggatttc gggctgcctg
     2521 aacgcgcacc ccgtcaatgc ggacacttcg cgcgcaatgc ctttgatgct caagcagtcg
     2581 gcgcggttag gcgtaatttt caacgtaaac agcgtatcgt ccaaatccaa gtattcgcgg
     2641 atattggtac cgacgggcgc atcttcaggc agaatgtgca ggccgttcac accgtcgtcg
     2701 ggcagaccga gttcgtcggt ggaacacaac atcccgtccg acaccacgcc gcgcattttg
     2761 gtcggcttga ttttgaaatt acccggcaaa acggcacccg gcagcgaaca cggcactttg
     2821 atgcccgctt tcacattcgg cgcaccgcac acgatctgaa ccaacccacc cgtacccgca
     2881 tcgacttggg taacgttcaa acggtcggca tcaggatgtt tttcaacgga tttcacttcg
     2941 gcaattacca cacccgtaaa cgcaggcgcg gcagtctcgg cttcttccac ttccaagccg
     3001 gacatcgtta acaggtgttc cagcttatcg gcggaaagtt cggtatcggc ttgggttttc
     3061 agccatgagt aggagaattg catgttatgt tctcaattaa ctaattaact ttagattttc
     3121 aagagctagc taaacctttt tgaatggcta agtccctatt aattacttct acagaaatgt
     3181 tccataaaga aatcaaccgc aaagtatctt tcttattaaa ttcttgcttt attaattcat
     3241 tcaattgccc aagataatta agcggcacat ccgggataac cagtaataat ttgatttcta
     3301 tgctacccca ttgcaaattt gaaaaagcac taggcataat tgtttctttg atatcttctc
     3361 tgcctaatat tcccaaaatt tcaacattta atgcattaca ccatttttga taaatctctg
     3421 aaatatattc atcaaaacgc tcaggagatc tttcttgatt tggaatactt tgttttgcct
     3481 caacaaataa caaattatct tcttgcagat agataaactc tactgtctta ataccttctt
     3541 gccttctctt ccggatatat ggttctatat aaaacaggtt attttttact agattaaaag
     3601 ttatacctga ttcagtgaga tttattattt cactcataaa aacctaacca atccatgctg
     3661 tttccggaga taaaacacct atttcttctc tgaacaatcg aatagactca ccaataattt
     3721 cattatccgg catgctattt tgtaaatttt cctgcaccca agtagtctgt tccttttctt
     3781 tgccaggcat aaaaacagga atactttcac tatgctttct agctaataaa cacagcttct
     3841 tgataacaaa atatgaatgc gtactcataa aaatctgtat tcccaatttg gatttagata
     3901 aggaaaacag aatttctaga aattgattaa ttgctttcgg atgtagatta gcttctggct
     3961 catcaataaa taagattgat ccaggactca aaaaccgatt tcctaataga gtgtctaata
     4021 tcccaatctt ttttaccccc tctgctgtag aattgataga gaaagtttgt ctatcttttt
     4081 catataccca tgccttcttt ttatcattgt agctaacata accgccaaac aatgcttcta
     4141 gatcctttct agcttccgct gcctcagggt aattcctccc ttttgttggt ttaatatcca
     4201 atgcttttac caaatcaatg taagtagcat caaaaccaaa tctcttttct tcctctgatt
     4261 ttttaattac atcaaatagt gatagaactt ctttgggtgg taaaaaaata gagttagcgt
     4321 ttattctggg agaaagttcg tatagctccg gtttaattag ctttttggta gttctaccaa
     4381 aagaaaacaa aactgaagaa ctatcttcta aagtcatact taacttaaga ggccgttcgt
     4441 ttggattttc ttttcctctt gtaactaaat caccaatttc ctctacttgg aacgtccaat
     4501 atagcttatc tcgcaattcc tcagaaaaat cacgaatatt ctttccttta tgagcttcct
     4561 catgactttt taaaacacta tataatgcct ttaaaataaa agttttccct ttgctatttt
     4621 ctgcaataat taaatttatt ttccctaaat tatcagcctt caataagcta atcggcccga
     4681 aattttcaag ccaaaatgat ttaatcatat aatcccccta atatatatca acaatatttg
     4741 tacaagacac attgtgaaaa gacagcaacc acagcaccat agtaaacgca tagcaggcgg
     4801 ataatggagc gacatagcgt ttcatgattt agctttctga ggtaggcaca ggctgctttt
     4861 ttcattttta ggcagcctac acaatcattt tacaaactgc ttcaaaaaat tcaaatcgtt
     4921 atcaaaaaac aagcgcaaat cgttcacgtt gtaacgcagc atcgcgaaac ggtcgagacc
     4981 gataccgaaa gcgaaaccgg tgtatttttc gggatcgata ttcacatttc tcaacacgtt
     5041 gggatgcacc ataccgcagc cgccgacttc cagccatttg ccgttttcgc ccataatgtc
     5101 gatttcgcca gacggttcgg tgaacgggaa gaaagacggg cggaaacgta cttgcaaatc
     5161 atcgcgttca aagaagcgac ggataaaatc cgtgaacact gcttttaagt cggcaaaagt
     5221 tacgccctct tctacccaca aaccttccgc ctgatggaac ataggcgagt gcgtggcatc
     5281 gctgtccaca cggtaaacgc ggccgggggc gataatgcgg atgggcggct cttttttatc
     5341 gagcatatag cggatttgaa tcggggaagt gtgcgtacgc aaaacatcac cgttttcaac
     5401 gtaaaacgta tcctgcatcg cacgggcagg atggtttgca gggatgttca gggcttggaa
     5461 attgtgaaaa tcgtcttcga tttcaggccc gtccgccact tcgaaaccca ttccgtgaaa
     5521 gagttcgacc acacgttgca aggtcagggt tacgggatgc aggctgccgc cttcctgagc
     5581 gcgtccgggc agggtaatgt cgagggcttc ggcggcaagt cgggcttgca gcttggcttc
     5641 gttgagggca tcgcgtttgg cattaaaagc cgtctgaaac cggtttttgc attcattgat
     5701 atgcgcacct atggttttgc gctcttcagg cgacatttgc cccaaagttt tcagaagtcc
     5761 ggtcaactcg ccggttttgc caagataacg ggctttgatt tgttctagag cgttgaagtc
     5821 ttgcgcagct tctactgcgg caatgccttc tgcaacgatg cggtttacat tttccataat
     5881 atcaagtctg tcaattaatg atatgccacc tgaaacaacg aggccgcctg tatagcctga
     5941 catatcagac tcttcagacg accttatttt cttcacggtc aatccattgg ataaattttc
     6001 tgta
//
LOCUS       DAWGNT010000125         5797 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.125, whole genome shotgun sequence.
ACCESSION   DAWGNT010000125 DAWGNT010000000
VERSION     DAWGNT010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5797
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.125"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            131..565
                     /locus_tag="WHR98_001548"
     CDS             131..565
                     /locus_tag="WHR98_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HEZ2308210.1"
                     /translation="MPLPAPCRFAKPAASFLSMALLSCQLSHAATAYIPPNDFQPNCD
                     IRRLGLTQSQHNELRKIRTAFKMAGDRARLKVMHSEHSRRRSVVEIISSDVFNRNEAR
                     DYVESRYLSGMDFAVDELEIQHRFFHILTPQQQQMWLSSCLK"
     gene            complement(578..1441)
                     /locus_tag="WHR98_001549"
     CDS             complement(578..1441)
                     /locus_tag="WHR98_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEZ2308211.1"
                     /translation="MELNEFLDKAYAVLRRLDAVLPPEPGHTDWNALAFRWQSAGKKG
                     FLEHLPDPHTFPLVRLAGVGRQTELLVRNTEQFIVGRPANNVLMSGARGTGKSSLVKA
                     LLHEYADKGLRLIEVDKSDLIGLPYLLTLLKERPEKFIVFCDDLSFESGDETYKALKT
                     ALDGGLSQRCANVLVYATSNRRHLMPEYFDENAGTTGMRGEIHQKEAVEEKISLSDRF
                     GLWLSFYPFDQNDYLAAVQNWLEDFGVPYDETAQMAALQWAQTRGSRSGRSAWQFACD
                     WAGRLPKQRAL"
     gene            complement(1449..2066)
                     /locus_tag="WHR98_001550"
     CDS             complement(1449..2066)
                     /locus_tag="WHR98_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEZ2308212.1"
                     /translation="MFTGIVQGLGKLTAIHRPSEAFHTYVVELPQEAADNLQRGASVA
                     NNGCCLTITEIEGNRVSFDLMAETLAKTNLGLLKEGDCVNIERAARFGDEIGGHVMSG
                     HIMATVPIVEIERDGFNRTVWFSLPHELKPYILTKGFVGLDGCSLTIGKVEDGRFNVH
                     LIPETLERTLFGSRKVGDRINIEIDPNTQAIVDTVERLMAQRYAK"
     gene            complement(2229..2844)
                     /locus_tag="WHR98_001551"
                     /pseudo
     CDS             complement(2229..2844)
                     /locus_tag="WHR98_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575380.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
     gene            3056..4828
                     /locus_tag="WHR98_001552"
     CDS             3056..4828
                     /locus_tag="WHR98_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite sensor histidine kinase"
                     /protein_id="HEZ2308213.1"
                     /translation="MILPARFSDGISLSLRLKLLTGLWVGLAALSVVLTLLLSLRLEN
                     AASVIEEAGNLRMQAYRLAYMAGEGSPRSQIDNQVDEFEKSLNRISQSDAIHPLIPSD
                     TPLAYDLIQSMLIIDWQAHILPPLQSYRRPTQVDLYRFAGNIELFLQALENANEKNTW
                     WLRRFQWAIMLMTLVSSVLMLFWHQIWVIRPLQALREGAERIGQRHFDIPVPEDGTPE
                     FKQVGRCFNQMGGRLKILYDDLEGQVAEQTRSLEKQNQNLTLLYQTTRDLHQSYIPQQ
                     AAEHFLNRILPAVGADSGRVCLDGGSDVYVSIHHADCGTAASDLGKYHEEIFPIEYQN
                     ETLGRLLLSFPNGISLDEDDRILLQTLGRQLGVSLAGAKQEEEKRLLAVLQERNLIAQ
                     GLHDSIAQALTFLNLQVQMLETAFAENKREEAVENIGFIKTGVQECYEDVRELLLNFR
                     TKISNKEFPEAVADLFARFTQQTGITVETAWENGSFLPPQEAQLQMIFILQESLSNIR
                     KHARATHVKFTLSEHGGRFTMTIQDNGQGFDTEKIGEPTGSHVGLHIMQERAKRIHAV
                     LEIRSQAQQGTTVSLTVASEESLK"
     gene            4825..5481
                     /locus_tag="WHR98_001553"
     CDS             4825..5481
                     /locus_tag="WHR98_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEZ2308214.1"
                     /translation="MTIKIILIDDHTLFRSGIKSLLSRQHDFEVIGEAADGLSGIKMI
                     NRLQPDVVLLDLDMPGMNGREALSQIISINPQQAVIMLTVSEDNDDLTECMRIGARGY
                     LLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRELEI
                     LGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRHNVPQPVLE
                     "
BASE COUNT         1439 a         1641 c         1328 g         1389 t
ORIGIN      
        1 ttccgattcc gccgttatgt ctgcctgccg gacatacgta cgcattatta acaaaagtta
       61 accgcgataa taccatcttt cacacgtcaa tctagtatat ttcctaaaat ttccaacaag
      121 aggaaaagcc gtgccactgc ctgctccctg ccgttttgcc aaacctgccg cctctttttt
      181 aagtatggct ttgctttcct gccagctttc ccacgccgcc acggcttata tccccccgaa
      241 cgattttcaa ccgaactgcg acatacgccg actcgggctg acccaaagtc agcacaatga
      301 gctgcgtaaa atccgcaccg ccttcaaaat ggcgggcgac agggcgcgtt tgaaggttat
      361 gcattccgaa cacagccgcc gccggtctgt cgtcgaaatc atttcctcgg atgtttttaa
      421 tcggaacgag gcgcgcgatt atgtcgaaag ccgctatttg tccggtatgg attttgcggt
      481 ggacgaattg gaaatccaac accggttctt ccatatcctc acaccgcaac agcagcaaat
      541 gtggctttct tcctgcctca aataatcccc gaaacgctca caacgcccgt tgtttcggca
      601 gcctgcccgc ccagtcgcag gcaaactgcc acgcggaacg tcccgaacgg ctgccccgcg
      661 tctgcgccca ctgcaatgcc gccatctgtg cggtttcatc atacggcacg ccgaaatctt
      721 ccagccaatt ttgcaccgcc gccagataat cgttttgatc gaacggataa aaactgagcc
      781 acaatccgaa tcggtcggac agggatattt tttcttccac cgcttctttc tgatggattt
      841 ccccccgcat ccccgtcgta ccggcattct cgtcaaaata ttcgggcatc aggtgccgtc
      901 tgttggaagt cgcgtaaacc aaaacgttgg cgcaacgttg agacagaccg ccgtctaacg
      961 cggttttcaa tgccttatag gtttcatcgc cgctttcaaa cgacaaatcg tcgcaaaata
     1021 cgataaattt ttccggacgt tccttcaaaa gcgtcaacag gtaaggcagg ccgattaaat
     1081 cgcttttatc gacttcgatc aggcgcaatc ccttatccgc atattcgtgt agcagggctt
     1141 tgaccagcga ggatttgcct gttccgcgcg cgccgctcat caatacattg ttcgcgggtc
     1201 tgccgacaat gaactgttcg gtattacgca ccagcaattc ggtttgcctg ccgactcccg
     1261 ccagccttac caagggaaag gtgtgcggat cgggcaagtg ttccaaaaaa ccttttttgc
     1321 ccgcactctg ccagcggaag gcaagcgcgt tccaatccgt atgcccgggt tcgggcggaa
     1381 gcacggcatc caaacgccgc aaaacggcat aggctttatc gagaaattcg ttcaattcca
     1441 tctctgcctc actttgcata tctttgcgcc atcagccgtt cgacggtatc gacgattgcc
     1501 tgcgtattcg gatcgatttc gatgttgatc ctgtcgccga cctttctgct gccgaacagc
     1561 gtccgttcca aagtttcggg aatcagatgg acattgaaac ggccgtcttc gactttgcct
     1621 atggtcaggc tgcaaccgtc caagccgacg aaccctttgg tcaggatata gggtttgagt
     1681 tcatgcggga gcgaaaacca aaccgtgcgg ttgaacccgt cccgttcgat ttcgacaata
     1741 ggcacggttg ccataatgtg tccgctcatg acgtgtccgc cgatttcgtc tccgaaacgc
     1801 gccgcccgtt cgatgttgac gcaatcgcct tccttcagca gccccaaatt ggtttttgcc
     1861 aaagtttccg ccattaaatc gaaactaacg cggtttcctt cgatttcggt aatcgtcagg
     1921 cagcagccgt tattggcaac cgatgcgccg cgttgcagat tgtccgccgc ctcttgcgga
     1981 agctcgacga cataagtgtg aaatgcctcc gacgggcggt ggattgccgt cagttttccc
     2041 aatccttgaa caatgcctgt aaacataatc ctgtttccct gtgtcggtaa aaatggtgca
     2101 aattgtagca tctccccgcg aaaaatgccg tctgaaatgc cttcagacag cattatgcct
     2161 ccgattcggg caaaaaccgc ccggtacggc ttgacctttc ctttccacgc cggtcggcgg
     2221 tcttaccctt atccctcctg caaatcggtt tgcgtgttca agtcggcaaa atgcccgtca
     2281 aactcgaatc tgaccgaccg cgccctttgc tgctgcaacc agcttcttaa tgttttcata
     2341 cccgaaaaca gatagggaat cgcgctttgc agaatctgcg ggcggatata cataatgttg
     2401 tagtgcatcg ttatcggcgt ttccacataa tacgcattgc acaacggtgt gcgtttcgac
     2461 acggtttcaa acctcgccac caaatcgtcc ggcagatacg gcatatcgca cggcacaacc
     2521 aaaagccagt cagcagtcgc caactgcaaa tcgttggctg cggtacacaa tgccgaaagc
     2581 gggccgaaat gctgccactg ccgcgcatcg ggaaaaatat gcggacttct tcgagcatat
     2641 tcttccaaat tccggttggt gctgatggcg atatggctga cctgcggcct gaccctgtcg
     2701 atgacatggt ctatcagtgc cttacccccc caaaagagca agccccttgt cctcgcctcc
     2761 catacggctc gcctgaccgt cggccagtat cagggcaaaa gttttcattg cggatgttct
     2821 cttggaaaag ttcgaggttt tcatgattgc agtctgccgt tcccaatgac tcaaaatgcc
     2881 gtctgaagca gacggcaaat aaattcatat tatctgaatt ttatcataac atgatttaac
     2941 actgaagcgg tacggattaa gttttcctta accaattctt tctgagcagt tgtatctaat
     3001 tccaaagaat gatattgttt gcattattta gaacaatttt tatttttcgc cgagcatgat
     3061 actgccagcc cgtttttcag acggcatcag cctttcccta cgcctgaaac tcctgaccgg
     3121 actgtgggtc gggttggcgg cattgtctgt cgttttgaca ctgctgctct ctttgcgtct
     3181 ggaaaacgcg gcctccgtca tcgaagaggc gggcaacttg agaatgcagg cataccgtct
     3241 ggcatacatg gcgggtgaag gatctccccg ctcccaaata gacaatcagg ttgacgaatt
     3301 tgaaaaaagc ctgaatcgta tttcacaaag tgatgccatc catccgctga ttccttcgga
     3361 cacccctctt gcttatgatt tgatacaatc catgctgatt atagattggc aggcacacat
     3421 cctccccccg ctccagtcct accggcgacc gactcaggtc gatctctacc gctttgccgg
     3481 aaacatcgaa ctgtttttgc aggcattgga aaatgccaac gaaaaaaaca catggtggct
     3541 caggcgtttt caatgggcaa ttatgttgat gacgctggtg tcgtctgtac tgatgctgtt
     3601 ttggcaccag atttgggtta tccggccgct gcaggcgtta agggaaggtg cggaacgcat
     3661 cggtcagcgg cattttgaca tccctgttcc cgaagacggt acgccggaat tcaaacaggt
     3721 cgggcgttgt ttcaatcaaa tgggcggcag gttgaaaatt ttatatgatg atttggaagg
     3781 acaagtcgcc gagcagacac gcagtctcga aaaacaaaat caaaacctga ccctgctgta
     3841 ccaaactaca cgggacctgc accaatccta cataccgcaa caggctgcag aacattttct
     3901 aaaccgtatc ctgcccgccg taggagcaga ttccggcaga gtttgtttgg acggcggatc
     3961 cgatgtttat gtttccattc atcatgcgga ttgcggcaca gcagcttcgg atttggggaa
     4021 gtaccatgag gaaatcttcc ccattgagta ccagaacgaa acattgggca ggctgttgct
     4081 cagctttcca aacggcattt ctcttgatga agacgaccgc atcctgcttc aaacactagg
     4141 caggcaattg ggcgtatcgc ttgccggcgc aaaacaggag gaagaaaaac gcctgcttgc
     4201 agtattgcag gaacgcaacc tgattgcgca aggattacat gacagcatcg cacaagcatt
     4261 aacgttccta aacctacagg tacagatgct ggaaaccgcc tttgccgaaa acaaacggga
     4321 ggaagccgta gaaaacatcg gcttcatcaa aacaggcgtg caggaatgtt atgaagatgt
     4381 ccgcgaactg ctgctcaact tccgtaccaa aatcagcaat aaagaatttc ccgaagccgt
     4441 tgccgaccta ttcgcccgct ttacgcaaca aaccgggata acggtcgaaa ccgcctggga
     4501 aaacggttcg ttcctgccgc ctcaggaagc gcagctccaa atgattttta tcctgcagga
     4561 aagcctgtcc aacatccgca aacacgcccg cgccacccat gtaaaattca ccctttccga
     4621 acacggcgga cgctttacca tgaccatcca agacaacgga caaggtttcg acacggagaa
     4681 aataggagaa cccacgggca gccatgtcgg actgcacatc atgcaggagc gtgccaaacg
     4741 catccatgcc gttttagaaa tccgttccca agctcaacag ggaaccaccg tctcattgac
     4801 ggttgcatct gaagaaagct tgaaatgacc attaaaatta tcctgataga cgaccatacc
     4861 ctcttccgca gcggcattaa atcccttttg tcgcgccaac atgattttga ggtcatcggc
     4921 gaagccgcag acggcctctc gggcattaaa atgatcaacc ggctccaacc cgatgtcgtc
     4981 ctgcttgacc ttgatatgcc cggtatgaac ggacgcgaag cactctccca aatcatcagc
     5041 atcaatccgc agcaggcagt gattatgctg accgtttccg aagacaacga cgacttgacc
     5101 gaatgtatgc gcatcggcgc gcgcggctac ctgctgaaaa acatcaacgc cgactttctg
     5161 ctcgaaagca tacgcaaagc cgccgaaggc gataatgtat tctcgcccga gatgaccgcc
     5221 aaactcgtca aaagcctgat ttccccccaa cctgcccaag ggacgcaggc actctcctca
     5281 cttacccctc gtgaactgga aatcttgggc tatctcgccg caggacacag caacaaaatc
     5341 atcgcccgcc acctcgatct tgccgaatcc accgtcaaag tccacgttca aaacctgctc
     5401 cgcaaactca acctcagcag ccgggtgcag gccgctgttt acgccatccg gcacaacgtc
     5461 ccccaacccg tgctggaata aggcgggttc agacggcata ttaggggttt taatccccgt
     5521 acggtcattc ggataacaga ccaagcatgt aagtttatgc ccccataagt acgcttggca
     5581 tagcagtaat attgttcggt tcagtgtttt ccgtttgccc ctatctgata ctgcaatatc
     5641 agctatgccg tctgaaaacg catcatcatg atattttcag acggcataat aaaaagcgga
     5701 aatactaatg cagggtaaaa tgttccattc cgaatcccat aaatatacaa tggcttatat
     5761 cgtttaagca tgtgtaaccc accctcatat caatcaa
//
LOCUS       DAWGNT010000126         5741 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.126, whole genome shotgun sequence.
ACCESSION   DAWGNT010000126 DAWGNT010000000
VERSION     DAWGNT010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5741
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.126"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(128..889)
                     /locus_tag="WHR98_001554"
     CDS             complement(128..889)
                     /locus_tag="WHR98_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308215.1"
                     /translation="MDANKEPNWEKRLENLRQTRRMKAVPTYAPLSRPSETGTDAPVP
                     KLDDESRDRVLKAYLKKWQEEHNAAVADCGEEVETDPMVILQENWLNAQASLQMSVSE
                     KHIESRRRILFDAKKDSAEFETGQIEGGENADAAESGTAADGVAENGDGGAEEALMPV
                     QINILNPKAVNRREVFCLSEQELTERLIKRLRPHLTDTVNGIIRTAVQKQMAVFTYQL
                     QQMLHEQAGAVVEDVLEHDIRKILNDIKYELKYKR"
     gene            989..1240
                     /locus_tag="WHR98_001555"
     CDS             989..1240
                     /locus_tag="WHR98_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308216.1"
                     /translation="MGSIEQRLEYLEEANDVLRMQNHVLSTAFKALIRALPAETAEVA
                     VESIQLAFEDALAELSYEDSPHTDLFHDVTYAFFREKER"
     gene            1292..2098
                     /locus_tag="WHR98_001556"
     CDS             1292..2098
                     /locus_tag="WHR98_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEZ2308217.1"
                     /translation="MNMKKWIAAALACSALALSACGGQGKDAAAPAANPDKVYRVASN
                     AEFAPFESLDSKGNVEGFDVDLMNAMAKAGNFKIEFKHQPWDSLFPALNNGDADVVMS
                     GVTITDDRKQSMDFSDPYFEITQVVLVPKGKKISSSDDLKNMNKVGVVTGYTGDFSVS
                     KLLGNDNPKIARFENVPLIIKELENGGLDSVVSDSAVIANYVKNNPTKGMDFVTLPDF
                     TTEHYGIAVRKGDEATVKMLNDALEKVLESGEYDKIYAKYFAKEDGQAAK"
     gene            2405..3928
                     /locus_tag="WHR98_001557"
     CDS             2405..3928
                     /locus_tag="WHR98_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HEZ2308218.1"
                     /translation="MTVIKQEDFIQSICDAFQFISYYHPKDYIDALYKAWQKEENPAA
                     KDAMTQILVNSRMCAENNRPICQDTGIATVFLKVGMDVQWDADMSVEEMVNEGVRRAY
                     TWEGNTLRASVLADPAGKRQNTKDNTPAVIHMSIVPGDKVEVTCAAKGGGSENKSKLA
                     MLNPSDNIVDWVLKTIPTMGAGWCPPGILGIGIGGTPEKAVLMAKESLMSHIDIQELQ
                     EKAASGAELSTTEALRLELFEKVNALGIGAQGLGGLTTVLDVKILDYPTHAASKPIAM
                     IPNCAATRHVEFELDGSGPVELTSPRVEDWPDLTYSPDNGKRVDVDKLTKEEVASWKT
                     GDVLLLNGKILTGRDAAHKRLVDMLNKGEELPVDFTNRLIYYVGPVDPVGDEVVGPAG
                     PTTATRMDKFTRQMLEQTDLLGMIGKSERGVATCEAIADNKAVYLMAVGGAAYLVAKA
                     IKSSKVLAFPELGMEAIYEFEVKDMPVTVAVDSKGESIHATAPPQWQAKIGIIPVES"
     gene            4026..5438
                     /gene="trkA"
                     /locus_tag="WHR98_001558"
     CDS             4026..5438
                     /gene="trkA"
                     /locus_tag="WHR98_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003714638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HEZ2308219.1"
                     /translation="MKILILGNGQVGSTVAQNLAAIPNNDVTVIDIDEKALQETGSRL
                     DVQTVFGNGASPFTLERAGAEDADLLLALSRSDETNIVACKVAADLFNIPGRIARVRS
                     SEYLEYLSPKLENNENGSLSIFGITETISPEQLVTEQLAGLIDCPGALQVLRFADDRV
                     RMVIIQARRGGLLVGRSIADIAQDLPDGADCQICAVYRNNRLIVPAPQTVIIEGDEIL
                     FAAAAENIGAVIPELRPKETSTRRIMIAGGGNIGYRLAKQLEHAYNVKIIECRPRRAE
                     WIAENLDNTLVLQGSATDETLLDNEYIDEIDVFCALTNDDESNIMSALLAKNLGAKRV
                     IGIVNRSSYVDLLEGNKIDIVVSPHLITIGSILAHIRRGDIVAVHPIRRGTAEAIEVV
                     AHGDKKTSAIIGRRISGIKWPEGCHIAAVVRAGTGETIMGHHTETVIQDGDHIIFFVS
                     RRRILNELEKLIQVKMGFFG"
BASE COUNT         1441 a         1725 c         1396 g         1179 t
ORIGIN      
        1 cggcttcgtc gccttgtcct gatttttgtt aatccactat attaatattt tgcgcctgtt
       61 ccatgaggct ttcaagtcgg acgggcagga aaatgccgtc tgaaacggct ttcagacggc
      121 atggcaatca gcgtttgtat tttaactcgt acttgatgtc gttgaggatt ttgcggatat
      181 cgtgttccaa cacgtcttcg actaccgcac ccgcctgctc gtgcagcatc tgctggagct
      241 gataggtaaa aaccgccatc tgcttttgca ccgccgtacg gatgataccg ttgacggtat
      301 cggtcagatg cgggcgcagg cgtttgatca gccgttcggt cagctcctgt tcggacaggc
      361 agaacacttc gcgccggttg acggctttcg ggttcaggat attgatttgg acgggcatca
      421 acgcctcttc cgcaccgccg tcgccgtttt ccgcaacccc gtctgccgcc gtacccgatt
      481 ctgccgcatc ggcgttttcc ccgccttcaa tctgtccggt ttcaaattcg gcactgtctt
      541 ttttggcatc gaacaggatt ctccgccgcg attcgatgtg tttttccgaa accgacattt
      601 gcagggaagc ctgcgcgttg agccagtttt cctgaagaat gaccattggg tcggtttcga
      661 cttcttctcc gcaatcggca acggcggcat tgtgttcttc ctgccatttt ttcagatacg
      721 ctttcaacac acggtctcgg ctctcatcgt ccagtttcgg cacaggcgcg tccgttccgg
      781 tttcagaggg gcgggacagc ggcgcgtaag tcggcactgc cttcatacgg cgcgtctgac
      841 gcaggttttc caaacgtttt tcccaattcg gctctttatt cgcatccatt ttcggcttcc
      901 ggttcttaat ctttgcaggc agacaaaccc gcgcccaaag cgcggtttga tataatggcg
      961 cattttaaca gattcgcgag gatacatcat gggcagcatc gaacagcgtt tggaatatct
     1021 ggaagaggcg aacgacgtgc tgcgtatgca gaaccacgtc ctgtccaccg ccttcaaagc
     1081 cctaatccgc gcccttcccg ccgaaaccgc cgaagtcgcg gtcgagtcga ttcagcttgc
     1141 ttttgaagac gcactggcgg aattgagcta tgaggacagc ccgcatacgg atttgttcca
     1201 cgacgttact tatgcgtttt tccgtgaaaa agaacgttaa ttttgtgtta aactgatttt
     1261 ttaggctttt tgattaccga aaggaatttt gatgaatatg aaaaaatgga ttgccgccgc
     1321 ccttgcctgt tccgcactcg cgctgtctgc ctgcggcggt cagggcaaag atgccgccgc
     1381 gcccgccgca aaccccgaca aagtgtaccg cgtggcttcc aacgccgagt ttgccccctt
     1441 tgaatcttta gactcgaaag gcaatgtcga aggtttcgat gtggatttga tgaacgcgat
     1501 ggcgaaggcg ggcaatttta aaatcgaatt caaacaccag ccgtgggaca gccttttccc
     1561 cgccttgaac aacggcgatg cggacgttgt gatgtcgggc gtaaccatta ccgacgaccg
     1621 caaacagtct atggacttca gcgacccgta ttttgaaatc acccaagtcg tcctcgttcc
     1681 gaaaggcaaa aaaatatctt cttccgacga tttgaaaaac atgaacaaag tcggcgtggt
     1741 aaccggctac acgggcgatt tctccgtttc caaactcttg ggcaacgaca atccgaaaat
     1801 cgcgcgcttt gaaaacgttc ccctgattat caaagaactg gaaaacggcg gcttggattc
     1861 cgtggtcagc gacagcgcag tcatcgccaa ttatgtgaaa aacaatccga ccaaagggat
     1921 ggacttcgtt accctgcccg acttcaccac cgaacactac ggcatcgcgg tacgcaaagg
     1981 cgacgaagca accgtcaaaa tgctgaacga tgcgttggaa aaagtactcg aaagcggcga
     2041 atacgacaag atttacgcca aatattttgc aaaagaagac ggacaggccg caaaataagc
     2101 ccgcccgtcc gaacacaatg ccgtctgaag ccctttcaga cggcattgtt catcaatcgg
     2161 cctacaatga actgcctgct gatttctccc taccgcaaag caacaggcaa agattacaaa
     2221 tatcaaaatc cgagtaaaac agtattttat taaaacaaat tgataatcaa gagattagaa
     2281 ttatgtattg tctttaccgt acaaacgctg gcactatttc aacctgataa aaaacagcct
     2341 tcaaaaaggt tgtttaaaac agcagcagac acttaccgcc acaaccttga aaaggaacac
     2401 aatcatgacc gtcatcaaac aggaagactt tatccaaagc atttgcgatg ccttccaatt
     2461 catcagctac taccatccca aagactacat cgacgcgctc tataaagcgt ggcagaagga
     2521 agaaaacccc gccgccaaag acgcgatgac gcagattttg gtcaacagcc gcatgtgtgc
     2581 cgaaaacaac cgccccatct gccaagacac aggtatcgca accgtgtttt tgaaagtcgg
     2641 tatggatgtg cagtgggatg cggacatgag cgtggaagaa atggttaacg aaggcgtgcg
     2701 ccgcgcctac acttgggaag gcaacaccct gcgcgcctct gtcctcgccg atccggccgg
     2761 caaacgtcaa aacaccaaag acaacacccc cgccgtcatt catatgagca tcgtgccggg
     2821 cgacaaagtc gaagtaacct gcgcggcaaa aggcggcggt tctgaaaaca aatccaaact
     2881 cgccatgctc aacccttccg acaacatcgt cgattgggta ttgaaaacca ttccgacgat
     2941 gggcgcgggc tggtgtcctc ccggcatctt gggcatcggc atcggcggta cgcccgaaaa
     3001 agccgtgttg atggcgaaag aatccctgat gagccacatc gacattcaag agttgcagga
     3061 aaaagcagcg tcaggtgcag aattgtccac caccgaagcc ctgcgcctcg aactctttga
     3121 aaaggtcaac gcgctgggca tcggcgcaca aggtttgggc ggtctgacca ccgtgttgga
     3181 cgtgaaaatc ctcgattacc cgacccacgc cgcctccaaa ccgattgcca tgattccgaa
     3241 ctgcgccgcc acccgccacg tcgaatttga attggacggc tcaggccctg tcgaactcac
     3301 atcgccgcgc gtcgaagact ggcccgattt gacttacagc cccgacaacg gcaaacgcgt
     3361 cgatgtcgac aagctgacca aagaagaagt cgccagctgg aaaaccggcg acgtattgct
     3421 gttgaacggc aaaatcctca ccggccgcga tgccgcacac aaacgcctcg tcgatatgct
     3481 caacaaaggc gaagaattgc ccgtcgattt caccaaccgc ctgatttact acgtcggccc
     3541 cgtcgatccg gtcggcgatg aagtcgtcgg tccggcaggt ccgaccacag ccacccgcat
     3601 ggacaaattc acccgccaaa tgctcgaaca aaccgacctc ttgggcatga tcggcaaatc
     3661 cgagcgcggc gtggccacct gcgaagccat cgccgacaac aaagccgtgt acctcatggc
     3721 agtcggcggc gcggcgtatc tcgtggcaaa agccatcaaa tcttccaaag tcttggcgtt
     3781 ccccgaattg ggcatggaag ccatttacga atttgaagtc aaagacatgc ccgtaaccgt
     3841 cgccgtagac agcaaaggcg aatccatcca cgccaccgcc ccgccccaat ggcaggcgaa
     3901 aatcggcatc atccccgtcg aatcttgagg caccatgccg tctgaacaca aaatctgcct
     3961 tcagacggca tttccgcccc cggttgcggt acaatccacc atttcatcac tcggcgaccc
     4021 acaccgtgaa aatcctcatt ttaggcaacg gacaggtagg ttctaccgtc gcacaaaacc
     4081 ttgccgccat acccaacaac gacgtaaccg ttatcgacat cgacgaaaaa gcattgcagg
     4141 aaacaggcag ccgcctcgat gtccaaaccg ttttcggcaa cggcgcatcc cccttcacat
     4201 tagaacgcgc cggcgcggaa gatgccgact tgctgctcgc gctctcccgc agcgacgaaa
     4261 ccaacatcgt cgcctgcaaa gttgccgccg acctgttcaa catccccggc cgcatcgcgc
     4321 gcgtccgttc cagcgaatac ctcgaatacc tcagccccaa gctcgaaaac aacgaaaacg
     4381 gcagcctttc catattcggc ataaccgaaa ccatcagccc cgaacagctc gttaccgaac
     4441 agcttgccgg cctgatagac tgcccgggcg cattgcaggt tttacgtttt gcagacgacc
     4501 gcgtgcggat ggtcatcata caggcgcggc gcggcggact gcttgtcgga cgcagcattg
     4561 ccgacatcgc ccaagatttg cccgacgggg ccgactgcca aatctgcgcc gtttaccgca
     4621 acaaccgcct catcgtcccc gcgccgcaaa ccgtcatcat cgaaggcgac gaaatcctgt
     4681 ttgccgccgc cgccgaaaac atcggcgcgg tcatacccga attgcgcccc aaagaaacca
     4741 gcacccgccg catcatgatt gccggcggcg gcaacatcgg ctaccgtctc gccaagcagc
     4801 tcgaacacgc atacaacgtc aaaatcatcg aatgccggcc gcgccgtgcc gaatggatag
     4861 ccgaaaacct cgacaacacc ctcgtcctgc aaggttcggc aaccgacgaa accctgctcg
     4921 acaacgaata catcgacgaa atcgacgtat tctgcgccct gaccaacgac gacgaaagca
     4981 acattatgtc cgcccttttg gcgaaaaacc tcggcgcgaa gcgcgtcatc ggcatcgtca
     5041 accgctcaag ctacgtcgat ttgctcgaag gcaacaaaat cgacatcgtc gtctcccccc
     5101 acctcatcac catcggctcg atactcgccc acatccggcg cggcgacatc gttgccgtcc
     5161 accccatccg gcgcggcacg gcggaagcca tcgaagtcgt cgcacacggc gacaaaaaaa
     5221 cttccgccat catcggcagg cgcatcagcg gcatcaaatg gcccgaaggc tgccacattg
     5281 ccgccgtcgt ccgcgccgga accggcgaaa ccattatggg acaccatacc gaaaccgtca
     5341 tccaagacgg cgaccacatc atctttttcg tctcgcgccg gcgcatcctg aacgaactgg
     5401 aaaaactcat ccaggtcaaa atgggctttt tcggataaac cgccccattc cggacatatt
     5461 gccgccaagc ggtatggaag cggaataatg gtaggtgggc ttcagacggc atccgccctc
     5521 cccgtcattc ccgcgtaagc gggaatccag accttgggat agcggcaata ttcaaaggtt
     5581 ataaaagacc cgtcattccc gcgcaggcgg gaatccagac cttgggatag cggcaatatt
     5641 caaaggttag ctgaagcttt agagattcta gattcccgtt tccacgggaa tgacgaaagg
     5701 ttgcgggaat ccaaaccatt gggcaacagc aatattcaaa g
//
LOCUS       DAWGNT010000127         5645 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.127, whole genome shotgun sequence.
ACCESSION   DAWGNT010000127 DAWGNT010000000
VERSION     DAWGNT010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5645
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.127"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            9..185
                     /locus_tag="WHR98_001559"
     CDS             9..185
                     /locus_tag="WHR98_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308220.1"
                     /translation="MAHQAPHCVLPERDYPPIRFYRYKQTDFNRKGMGIKSVSDTSRA
                     IPSENQSPLSDGIV"
     gene            262..1209
                     /locus_tag="WHR98_001560"
     CDS             262..1209
                     /locus_tag="WHR98_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HEZ2308221.1"
                     /translation="MNILSKISSFIGKTFSLWAALFAAIAFFAPDTFKWAGPYIPWLL
                     GIIMFGMGLTLKPSDFDILFEHPKVVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGV
                     ILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAG
                     SMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKI
                     MESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKTLTIEVGMQNSGLAAALAAAH
                     FAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKP"
     gene            complement(1362..2486)
                     /gene="rluD"
                     /locus_tag="WHR98_001561"
     CDS             complement(1362..2486)
                     /gene="rluD"
                     /locus_tag="WHR98_001561"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HEZ2308222.1"
                     /translation="MQNTSFDNESDYSDDSDFASASETENRIGLTVPLELAGGRLDAV
                     LAKLLPDYSRSRLTSWIKEGAVIVNDKPSQPKDKMIGGEQICVTVRPSEENLAFVPEP
                     MALDIIYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQVPRAGIVHRLD
                     KETSGLMVVAKTLPAQNSLVQQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHNRL
                     KMAVVKFGGKPAVTHVKVLERYLAHSYIECSLETGRTHQIRVHMREANHPLAADPVYG
                     NPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPKTGETVSFEAPIPDDIYHLLSVLRL
                     EAGLDSSLSNEEEWQDKFGADDDDDWNEDDYDVEVVYVRE"
     gene            2485..3288
                     /locus_tag="WHR98_001562"
     CDS             2485..3288
                     /locus_tag="WHR98_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEZ2308223.1"
                     /translation="MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQD
                     ELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAYAYYKDDEKDKALAAIERFRRLH
                     PQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
                     KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESL
                     AILELAYQKLGKPQLAADTRRVLETNFPKSPFLTHAWQPDDMPWWRYWH"
     gene            complement(3346..5565)
                     /locus_tag="WHR98_001563"
     CDS             complement(3346..5565)
                     /locus_tag="WHR98_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HEZ2308224.1"
                     /translation="MFRRWFLPCWVVGAAASFALPVVPHWLFWLAAFAVFAVFARRFA
                     FAGLMLCVLAGAAYGVFRTEAALSSQWWAEAVSGVPLTVEVADMPRSDGRRVQFAAKA
                     VDSGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGA
                     GTVGADRVLLHGGSGWGIAVWRSRISRNWQQADADGGLSDGIGLMRALSVGEQSALRP
                     ELWQAFRPLGLTHLVSISGLHVTMVAVMFAWLAKRLLACSPRLPARPRAWVLAAGCAG
                     ALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLSAWATWWQALAAVLLFDPSAVLGVG
                     TWLSFGLVAALIWACSGRLHEGKRQTALRGQWAASVLSLVLLGYLFASLPLISPLVNA
                     VAIPWFSWVLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVASAPLP
                     LLVLAVCAALLLLLPRGLGLRPWAVLLLAGFVFYRSPGVPENEVAVTVWDAGQGLSVS
                     VQTANHHLLFDTGTAAAAQMGIVPSLNAAGVRRLDKLVLSHHDSDHDGGFQAVGKIPN
                     GGIYAGQPEFYEGARHCAEQRWQWDGVDFEFLMPSERKNIDDNGKSCVLRVVAGGAAL
                     LVTGDLDTKGEESLVGKYGGNLYSQVLVLGHHGSNTSSSGVFLNAVSPEYAVASSGYA
                     NAYKHPTEAVQNRVRAHGIKLLRTDLSGALQFGLGRGGVKAQRLRGYKFYWQKKPFE"
BASE COUNT         1358 a         1788 c         1367 g         1132 t
ORIGIN      
        1 aacaggggat ggcacatcaa gcaccgcact gcgtgttgcc cgaacgagac taccctccga
       61 ttagattcta tcgctataaa cagacggatt tcaaccggaa aggaatgggg ataaagtccg
      121 tttccgacac ctctcgggcg ataccgtctg aaaaccaatc tccactttca gacggcattg
      181 tttaggcacg gtcattttgc aaattaaggt taaggcgtgt atgcttgcct tcccttaaaa
      241 acaaacacgc aacgcattat tatgaatatc ctcagtaaaa tcagcagctt tatcggaaaa
      301 acattttccc tctgggccgc gctctttgcc gccatcgctt ttttcgcgcc cgacaccttc
      361 aaatgggcgg ggccttatat tccttggctg ttgggcatta ttatgttcgg tatgggtttg
      421 acgctcaaac cttccgactt cgatattttg ttcgaacatc ccaaagtcgt catcatcggc
      481 gtaatcgcac aattcgccat tatgccggca accgcctggc tgctgtccaa actgttgaac
      541 ctgcctgccg aaatcgcggt cggcgtgatt ttggtcggct gctgcccggg cggtacggct
      601 tccaatgtga tgacctatct ggcgcgcggc aatgtggctt tgtcggttgc cgttacgtct
      661 gtttccaccc tgatttcccc attgctgact cccgccatct tcctgatgct tgccggtgaa
      721 atgctggaaa tccaagcggg cagtatgttg atgtccatcg tcaaaatggt tttgctcccc
      781 attgttttgg gtttgattgt ccataaggtt ttgggcagta aaaccgaaaa gctgaccgat
      841 gcgctgccgc tggtttccgt tgccgccatc gtgctgatta tcggcgcggt tgttggggca
      901 agcaaaggca agattatgga aagcggcctg ctgatttttg cggttgtcgt actccacaac
      961 ggcatcggct acctgctcgg cttctttgcc gccaaatgga ccggcctgcc ttatgatgca
     1021 caaaaaacgc tgaccatcga agtcggtatg caaaactcgg gcctggccgc cgcgcttgcc
     1081 gccgcacact ttgccgccgc gccggtcgtt gccgttccgg gcgcattgtt cagcgtgtgg
     1141 cacaatatct ccggctcgct gctggcaact tattgggcgg ccaaagccgg taaacataaa
     1201 aaaccctaaa cgcctttcat cataatgccg tctgaacggg gcaaacaaaa ctggcggttt
     1261 ctgcccggcc ccttcagacg gcctttgttt gaaatcggcg gggacgattg cccggctgct
     1321 ccgattcggc tgcctgcgtt cgccccgcct ttcaagccgc ctcactccct tacataaacc
     1381 acttcgacat cgtagtcgtc ttcgttccaa tcgtcatcgt cgtccgcgcc gaatttgtcc
     1441 tgccattcct cttcattgct caaagacgaa tccaaaccgg cttcaagacg gaggacagac
     1501 aacaaatgat atatgtcgtc cggaatcggt gcttcaaacg aaacggtttc gccggttttc
     1561 ggatgagtga aacttaagcg gtaggcgtgc aatgcctgac gcgcacccaa acttttaacg
     1621 gcttctttca ccgtgtcgcc gcacggatgg cgcgggttgc cgtaaaccgg gtcggcggca
     1681 agcggatggt tggcctcacg catatggacg cggatttggt gcgtcctgcc tgtttcgagc
     1741 gagcattcga tatagctgtg cgccagatag cgttccaaca ctttgacgtg ggtaacggct
     1801 ggtttgccgc cgaatttgac gactgccatt ttcaggcggt tgtgcggatc gcgtccgatt
     1861 tgggtttcga ttttaccgtc aaagggaacg atgccgttgg cgacggcgcg gtaaatgcgt
     1921 ttgaccgtgc gctcttgaag ctgttgcacg agggaatttt gcgccggcag ggttttggca
     1981 accaccatca gcccgctggt ttctttgtcc aaacggtgta cgatgcctgc acgaggtact
     2041 tggctcaatt cgggacagtg cgccaacagg ccgttgagca gcgtccccgt ccagttgccc
     2101 gccgccggat gcaccaccag tccggccggt ttgttgacga cgatgacggt atcgtcttcg
     2161 taaataatat ccaaagccat aggctctgga acaaacgcca gattttcctc actcggacgg
     2221 acggttacac aaatttgctc gccgcctatc attttgtctt tgggttgcga aggtttatcg
     2281 tttacaataa ccgcgccttc tttaatccat gatgtcaggc ggctgcgcga gtagtcgggc
     2341 agaagtttcg ccaacaccgc atccaaccgc ccgccggcaa gctcgagcgg aacggtcaga
     2401 ccgatacggt tttcagtttc ggaagctgac gcaaagtctg aatcgtcgct ataatcggat
     2461 tcattatcaa aggaagtatt ctgcatgaaa aaaattcttt taacggtttc attaggtttg
     2521 gcactgagtg cctgtgccac tcaaggtacg gtcgataaag atgctcagat tacccaagat
     2581 tggagtgtgg agaagctcta tgccgaagcc caggacgaat tgaacagcag caattatacg
     2641 cgggctgtca agttatacga aatcttggaa tcgcgcttcc ccaccagccg ccatgcccgg
     2701 caatcccaac tggataccgc atacgcctat tataaagacg atgaaaaaga caaggctctg
     2761 gcggcaatcg aacgcttccg ccgcctccat ccgcagcatc cgaatatgga ttacgcgctg
     2821 tatctgcgcg gcttggtgct gttcaacgaa gaccagtcct tcttgaacaa actggcctcg
     2881 caagactggt ccgaccgcga cccgaaagcc aaccgcgaag cgtatcaggc ctttgcggaa
     2941 ctcgtccaac gcttcccgaa cagcaaatac gccgccgatg caaccgcacg catggtcaaa
     3001 ctggtcgatg cactgggcgg caatgaaatg tcggtggcgc gttactacat gaaacgcggc
     3061 gcatatatcg ccgccgccaa ccgcgcccaa aaaattatcg gcagctatca aaatacacgc
     3121 tatgtcgaag aatcactcgc catattggaa cttgcctacc aaaaactcgg caaaccgcag
     3181 cttgccgccg atacgcgccg cgtgttggaa accaacttcc cgaaaagccc gtttttgacg
     3241 cacgcctggc agcccgacga tatgccctgg tggcgttact ggcattaagc ccatcttcgt
     3301 aatgccgtct gaagccgttt cagacggcat tttatgtttc aaacctcatt caaacggttt
     3361 tttctgccaa tagaatttat accctctcaa acgttgagcc ttcacgccgc cgcgtcccaa
     3421 gccgaattgc agtgcgcccg acaaatcggt acgcagcagt ttgatgccgt gtgcgcggac
     3481 acggttctgc accgcttcgg tcggatgttt gtaggcgttg gcataaccgc ttgaagcaac
     3541 ggcatattcg ggcgagacgg cattgaggaa cacgcccgac gaggacgtat tgctgccgtg
     3601 atgtcccaaa accaaaacct ggctgtacag gttgcctcca tacttgccga ccaggctttc
     3661 ctcgcccttc gtatccaaat cgcccgttac cagcagtgcc gcaccgcccg ccacaacacg
     3721 caaaacacaa cttttcccat tatcatcgat gtttttgcgt tcagacggca tcaaaaactc
     3781 aaaatccacg ccgtcccatt gccaacgctg ttccgcacaa tgccgcgccc cctcataaaa
     3841 ttccggctgc ccggcataaa tcccgccgtt cggtatcttg ccgactgcct gaaaaccgcc
     3901 gtcgtggtcg ctgtcgtgat gcgacagaac cagcttgtcc aaacggcgga cacccgccgc
     3961 attcaaactc ggcacaatcc ccatctgcgc cgccgctgcc gttccggtgt caaacaaaag
     4021 atgatgattt gccgtctgaa ccgacaccga caaaccctgc cccgcatccc aaaccgtaac
     4081 cgcaacctca ttttccggca cgccaggtga acggtaaaac acaaaccctg ccaacagcaa
     4141 caccgcccac ggacgcaaac ccaagccgcg cggcagcagc aacagcaaag cggcacacac
     4201 cgccaacacc aacagcggca aaggtgcgga ggcaacggca aactcgggcg acacatcggc
     4261 aagccacacc aaaaaccgca aagtatattc cgccaaaaat gcccccaact gttgcaaagg
     4321 cgcaaacggc acgaccgaac ccagcaacgc cagcggcgtc aatacccaag aaaaccacgg
     4381 aattgccacc gcattgacca aagggctgat taaaggcagc gaagcaaaca gataaccgag
     4441 caaaaccagc gacaacaccg aagccgccca ctgcccgcgc aaagcagttt gccgttttcc
     4501 ctcgtgcaaa cgccccgagc acgcccatat cagggccgcc accaaaccga aagacagcca
     4561 agtccccaca cccaagaccg ccgacgggtc gaacagcagc accgccgcca acgcctgcca
     4621 ccacgtcgcc cacgccgaca atcttcccct gcgccaagcc cacgcaaacg ccgccaacat
     4681 caaaacgctg cgctgcgtcg gcacggaaaa accggcaagc agcgcgtaaa acagcgcgcc
     4741 tgcacacccc gccgccaaaa cccacgcgcg cggccgggca ggaaggcgcg gggaacaggc
     4801 aagcagccgc ttcgccagcc acgcaaacat taccgccacc atcgtaacgt gcaaacccga
     4861 aatactgacc aaatgcgtca gccccaacgg ccggaacgcc tgccacaatt cggggcgcaa
     4921 tgccgactgt tcgcccacgc tcaacgcgcg catcagcccg atgccgtctg aaagcccgcc
     4981 gtccgcatcc gcctgctgcc aattacggct gatgcggctg cgccaaaccg caatccccca
     5041 accgcttccg ccatgcagca aaaccctgtc cgcaccgacc gtccccgcgc cgcctattcc
     5101 gttggataat gcccacgcct cacggttcaa accgcgcagg ttcaactccc cgacgacagg
     5161 gtgcacacgt gccgttatcc gccatctgct cccgaccgcc cattcgcgcc gtttgtagtc
     5221 cgacagcagc aaatcaaacg tccgaccacc gctgtccaca gcctttgccg caaactgcac
     5281 acgccgcccg tccgacctcg gcatatccgc cacttccacc gtcaaaggca cgcctgaaac
     5341 ggcttctgcc caccattggg aagacaatgc cgcctccgtc ctgaatacgc cgtaagccgc
     5401 gcccgccaac acgcacagca tcagaccggc aaacgcaaaa cgccttgcaa acacagcaaa
     5461 aaccgcaaaa gccgccagcc aaaacagcca atgcggcacg accggcagcg caaacgaagc
     5521 cgccgcaccg acaacccaac acggcaaaaa ccaacgacgg aacacgtctc cccaccccag
     5581 atatttcaaa aataaacgga taataaagca aatccgaaaa accgtcataa caagatttga
     5641 aaatg
//
LOCUS       DAWGNT010000128         5626 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.128, whole genome shotgun sequence.
ACCESSION   DAWGNT010000128 DAWGNT010000000
VERSION     DAWGNT010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5626
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.128"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(189..1256)
                     /gene="murG"
                     /locus_tag="WHR98_001564"
     CDS             complement(189..1256)
                     /gene="murG"
                     /locus_tag="WHR98_001564"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEZ2308225.1"
                     /translation="MGGKTFMLMAGGTGGHIFPALAVADSLRARGHHVIWLGSKDSME
                     ERIVPQYGIRLETLAIKGVRGNGIKRKLMLPVTLYQTVREAQRIIRKHRVECVIGFGG
                     FVTFPGGLAAKLLGVPIVIHEQNAVAGLSNRHLSRWAKRVLYAFPKAFSHEGGLVGNP
                     VRADIAKLPAPAERFQGREGRLKILVVGGSLGADVLNKTVPQALALLPDNARPQMYHQ
                     SGRGKLGSLQADYDALGVKAECVEFITDMVSAYRDADLVICRAGALTIAELTAAGLGA
                     LLVPYPHAVDDHQTANARFMVQAEAGLLLPQTQLTAEKLAEILGGLNREKCLKWAENA
                     RTLALPHSADDVAEAAIECTA"
     gene            complement(1260..2585)
                     /locus_tag="WHR98_001565"
     CDS             complement(1260..2585)
                     /locus_tag="WHR98_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HEZ2308226.1"
                     /translation="MQTDWQVVFLKISEVLVKVGDGVHTLLLDRPIVRDGRKFDAPLL
                     WMVVLMTAFSLLMIYSASVYLASKEGGDQFFYLTRQAGFVVAGLIASGLLWFLCRMRT
                     WRRLVPWIFALSGLLLVVVLIAGREINGATRWIPLGPLNFQPTELFKLAVILYLASLF
                     TRREEVLRSMESLGWQSIWRGTANLIMSATNPQARRETLEMYGRFRAIILPIMLVAFG
                     LVLIMVQPDFGSFVVITVIAVGMLFLAGLPWKYFFVLVGSVLGGMVLMITAAPYRVQR
                     VVAFLDPWKDPQGAGYQLTHSLMAIGRGEWFGMGLGASLSKRGFLPEAHTDFIFAIIA
                     EEFGFFGMCVLIFCYGWLVVRAFSIGKQSRDLGLTFNAYIASGIGIWIGIQSFFNIGV
                     NIGALPTKGLTLPLMSYGGSSVFFMLISMMLLLRIDYENRRKMRGYRVE"
     gene            complement(2711..4048)
                     /locus_tag="WHR98_001566"
     CDS             complement(2711..4048)
                     /locus_tag="WHR98_001566"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009312754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEZ2308227.1"
                     /translation="MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVS
                     QIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDIELLA
                     DIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREGKK
                     ADVWVLELSSFQLENTESLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQV
                     LNADDAFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATKDIPLQGLHN
                     AANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGAT
                     AAAIAGLQNPLFVILGGMGKGQDFTPLRDALAGKAKGVFLIGVDAPQIRRDLDGCGLN
                     MTDCATLEEAVQTAYAQAEACDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL"
     gene            complement(4133..4405)
                     /locus_tag="WHR98_001567"
     CDS             complement(4133..4405)
                     /locus_tag="WHR98_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HEZ2308228.1"
                     /translation="MKQTVKWLAAALIALGLNQAVWADDVSDFRENLQAAAQGNAAAQ
                     YNLGAMYYKGHGVRQDRALAQEWLGKACQNGNQDGCDNDQRLKAGY"
     gene            complement(4520..5602)
                     /locus_tag="WHR98_001568"
     CDS             complement(4520..5602)
                     /locus_tag="WHR98_001568"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEZ2308229.1"
                     /translation="MFLWLAHFSNWLTGLNIFQYTTFRAVMAALTALAFSLMFGPWTI
                     RRLTALKCGQAVRTDGPQTHLVKNGTPTMGGSLILTAITVSTLLWGNWANPYIWILLG
                     VLLATGALGFYDDWRKVVYKDPNGVSAKFKMVWQSSVAIIAGLALFYLAANSANNILI
                     VPFFKQIALPLGVVGFLVLSYLTIVGTSNAVNLTDGLDGLATFPVVLVAAGLAIFAYA
                     SGHSQFAQYLQLPYVAGANEVVIFCTAMCGACLGFLWFNAYPAQVFMGDVGALALGAA
                     LGTVAVIVRQEFVLVIMGGLFVVEAVSVMLQVGWYKKTKKRIFLMAPIHHHYEQKGWK
                     ETQVVVRFWIITIVLVLIGLSTLKIR"
BASE COUNT         1347 a         1656 c         1435 g         1188 t
ORIGIN      
        1 ctcaggattt catatcgatg gcaatatagt taaaaataag gctgcaccca gcggcaaacc
       61 ctgctttcct gcccattttc aaactcgatt tcatataccg aaacaccaga aaaaacaaaa
      121 tataaggccg tctgaaaccg gtttcgtggt tttcagacgg catctgtttc gtttatcgca
      181 tcatgtcatc atgccgtaca ctcgatagcg gcttccgcca cgtcgtccgc actgtgcggc
      241 agtgccaacg tacgggcgtt ttctgcccat ttgaggcatt tttcgcggtt taagccgccg
      301 agaatctcgg cgagtttttc cgccgtcaac tgggtttgcg gcaacagcaa tcccgcctcc
      361 gcctgcacca taaaacgcgc gttggcggtt tggtgatcgt caaccgcgtg ggggtacgga
      421 acgagcaacg cacccaatcc cgccgccgtc aactcggcaa tcgtcagcgc gccggcacgg
      481 caaatcacca aatcggcatc gcggtaggcg gacaccatat cggtaataaa ttccacgcat
      541 tcggctttca cgcccagcgc gtcgtaatcc gcctgcaagc tgcccagctt gccccgtccc
      601 gattggtggt acatctgcgg acgcgcattg tcgggcagca aagccaatgc ctgcggtacg
      661 gttttgttca aaacgtccgc gcccaaactg ccgccgacca ccaaaatttt cagacggcct
      721 tcacgccctt ggaagcgttc ggcaggcgcg ggcagcttgg caatatcggc gcggacggga
      781 ttgccgacca aaccgccttc gtggctgaac gctttcggaa aagcgtacaa cacccgcttc
      841 gcccagcgcg acaggtggcg gttggacaaa cctgccacgg cgttttgctc gtgaatcaca
      901 atcggcacgc ctaatagctt cgccgccaaa ccgccgggga aggtaacgaa gccgccgaag
      961 ccgatgacgc actcgacacg gtgtttgcgg ataatccgct gcgcttcgcg gacggtttga
     1021 tacaaagtaa ccggcagcat cagtttgcgt ttgatgccgt tgccgcgcac gcctttaatc
     1081 gccagcgttt ccaagcgtat gccgtattgc ggcacgatac gctcttccat cgaatccttg
     1141 ctgcccagcc aaatcacatg atggccgcgc gcgcgcaatg aatccgccac cgccagcgcg
     1201 gggaaaatat gtccgcccgt tccgcccgcc atcagcataa aggttttacc gcccatgatt
     1261 tactccaccc gataaccgcg cattttccgg cggttttcat aatctatacg caacagcagc
     1321 atcatgctga tcagcatgaa aaagactgac gaaccgccat aggacatcaa cggcagcgtc
     1381 agacctttgg tcggcaaagc accgatgttc acaccgatat tgaagaaact ttggataccg
     1441 atccaaatgc cgatacccga agcgatatag gcgttgaaag tcaaacccaa atcgcgcgac
     1501 tgcttgccga tggaaaacgc ccgcaccacc agccagccgt aacagaatat cagcacgcac
     1561 ataccgaaga aaccgaattc ttcggcgatg atggcaaaaa taaaatcggt atgcgcttcc
     1621 ggcagaaagc cgcgtttgct caaactcgca cccaaaccca taccgaacca ctctccgcgc
     1681 ccgattgcca tcagagagtg ggtaagctgg tagccggcac cctgcgggtc tttccacggg
     1741 tccaaaaatg ccactacccg ctgcacacgg tagggagcgg cggtaatcat cagcaccatc
     1801 ccgcccaaga cgctgcctac caggacgaaa aaatatttcc acggcaatcc tgccaaaaac
     1861 agcattccaa cggcaatgac ggtaatgacg acaaacgaac cgaaatccgg ctgtaccatt
     1921 atcagcacca aaccgaacgc caccagcata atcggcagga tgatcgcccg gaaacggccg
     1981 tacatttcta atgtttcacg acgtgcctgc ggattggtgg cggacatgat cagattggcc
     2041 gtcccccgcc aaatcgactg ccaacccaaa ctttccatgc tgcgcaacac ttcttcacgg
     2101 cgcgtgaaca ggcttgccaa ataaaggatg accgccagct tgaacagctc ggtcggctgg
     2161 aaattcaacg gacccaaagg tatccaacgg gtcgcgccat tgatttcgcg cccggcaatc
     2221 aatacgacta ccagcaacag gccggatagg gcaaaaatcc acggcacaag ccgccgccat
     2281 gtcctcatcc tgcaaagaaa ccataacaaa ccgctcgcta tcaagccggc aacgacgaac
     2341 cccgcctgtc tggtcaaata gaaaaactga tcgccgcctt cttttgatgc caaatacaca
     2401 gaagccgaat aaatcatcag caggctgaac gccgtcatca gcaccaccat ccacaaaagc
     2461 ggcgcgtcga atttcctgcc gtcgcgcaca atcggcctgt cgagcagcag agtgtggaca
     2521 ccgtcgccca cttttaccaa tacttccgaa atcttcaaaa aaaccacctg ccagtctgtt
     2581 tgcacctgcc gcaaagggca aaaatttcag acggcagaca atgccgtccg aacatacgat
     2641 acatcccaaa tcggtattct aaatctttac ttgccgccca acaatgacgg cgtttgcatt
     2701 tcagacggca tcacaaagcc ttaaacgctt cgataaacac ttccgaacgg tgcgcgtagc
     2761 ctttaaacat atcaaaactc gcacaagccg ggctgagcag cacgatatcg cacgcttcgg
     2821 cttgggcata tgccgtctga acggcttctt ccaaagtggc gcagtcggtc atattcagac
     2881 cgcagccgtc caaatcgcgg cggatttgcg gcgcatcaac gccgatcagg aacacgcctt
     2941 ttgccttgcc ggcaagcgcg tcgcgcagag gcgtgaagtc ctgccctttg cccatgccgc
     3001 ctaaaatcac gaagagcgga ttttgcaaac cggcaatcgc ggcggcggtc gcaccgacgt
     3061 tcgtgccttt gctgtcgtcg atgaacacca cgccattttt ctcgccgatt ttttccacgc
     3121 ggtgcggcag gccttgaaag gttttgacgt gttcaagcaa tgcttcgcgc ggcaaaccga
     3181 cggcttcgca caaagccacg gcagccatga cgttggcggc gttgtgcaag ccttgcaacg
     3241 gaatgtcttt cgtggcaatc aaatcttcat tgccttgttt caggcggcct gtctcgcgtt
     3301 ccaaccaaaa atcggcttcg tgttccaacg aaaaccattt tacctcgcgc cctgcccgtt
     3361 tcatggcacg gcagaacgca tcgtccgcat tcaaaacctg cacaccgtcg ccacggaaaa
     3421 tcttggcttt ggtatgcgcg tagtcgagca agtcgtcgta gcggtcgaga tggtcttcgg
     3481 aaatgttcag taccgtcgcc gcagtcgggc gcaggctttc ggtgttttcc agttggaagc
     3541 tggaaagctc caacacccac acgtccgctt ttttgccttc gcgctgcaat tctgcctcca
     3601 aaaccggcgt gccgatattg cccgcgataa cggtatccag cccgcacttg atgcagagat
     3661 agccgaccag gctcgttacc gtggttttgc cgttgctgcc ggtaatcgca attaccttgt
     3721 cgcctcggcg gttcacaatg tccgccagca attcgatgtc gcccaacacg cgtccgccgt
     3781 tttgcttgaa cgcctcaata tccggctgcc gctcgctgat gccggggctg agtgccagaa
     3841 tatcgaaacc gttgtccagc gcatctttca gacgacccgt gtaaaacacc agcccgtcaa
     3901 acatcttacc aatttgcgac acgcgctccg gtttcagctc cgcatcatac gcggcaacct
     3961 ccgcgccgtt tttgcgcagg taggcaatca tggaaatacc cgtgccgcca agtccggcga
     4021 cgaggatttt tttgttttgg aaagtcattt tggtttgtcc taaaacaaat catattgggc
     4081 agggggatgt ctgctcctgc tcaagccgct ttcagacggc atcgcgagcc gattaataac
     4141 ccgccttcag gcgttggtca ttgtcgcagc cgtcttggtt tccgttttga caagccttgc
     4201 caagccattc ttgtgcaagg gcgcggtctt ggcgcacgcc gtgccctttg taatacattg
     4261 cgcccaaatt gtattgggct gctgcatttc cctgtgctgc cgcctgcaag ttttcccgaa
     4321 aatccgatac gtcatccgcc cacaccgctt ggttcaagcc caaggcaatc agggcggcgg
     4381 caagccattt gactgtctgt ttcatggttt tacttctgtt ttagtataag ccgccgttaa
     4441 cgataaggct gggcggattg tcgccgcagg tttattgcgc gttcaaatgc cgtctgaaag
     4501 atgttcagac ggcataggtt cagcggattt tgagggtact caaaccgatc aacaccaaga
     4561 cgatagtgat aatccaaaag cggacgacga cttgggtttc tttccagcct ttttgttcgt
     4621 aatggtggtg gatgggcgcc atcaggaaga tgcgtttttt ggttttcttg taccagccga
     4681 cttgaagcat aacggatacg gcttctacga caaataatcc gcccataatg acgaggacaa
     4741 actcttggcg gacgatgacg gcgacggtac cgagcgcggc acccaatgcc aatgcaccga
     4801 catcgcccat aaagacttgc gcgggatagg cgttaaacca caagaaaccg aggcacgcgc
     4861 cgcacatggc ggtacagaaa atcaccactt cgtttgcgcc ggcaacgtaa ggtaattgca
     4921 ggtattgggc aaattgtgag tggccgctgg cataggcgaa gatggcgagg ccggcggcaa
     4981 cgaggacgac ggggaaggtc gcaaggccgt ccaagccgtc ggtgaggttg acggcattgg
     5041 atgtgccgac gatggtcagg taagacaaca ccaaaaagcc gaccacgccc agcggcaggg
     5101 cgatttgttt gaagaacggg acaatcaaaa tattgttggc ggaattggcg gcaaggtaaa
     5161 acaatgccaa accggcgata atggcaacgc ttgactgcca caccattttg aatttggcgg
     5221 acacgccgtt ggggtcttta tagacgactt tgcgccagtc gtcgtaaaaa ccgagcgcac
     5281 cggtggcaag cagtacgccc aagagaatcc agatatacgg gttcgcccag ttgccccaca
     5341 acagggtgga cacggtaatg gcggtcagaa tcagcgaacc gcccatcgtc ggcgtgccgt
     5401 ttttgacgag gtgggtttgc gggccgtcgg tacgcactgc ctgcccgcat ttgagcgcgg
     5461 tcagcctgcg tatcgtccac gggccgaaca tcagggaaaa cgctaaggcg gtcaacgccg
     5521 ccatgacggc gcggaatgtg gtgtattgaa aaatattcag accggttaac cagttgctga
     5581 aatgtgcgag ccataaaaac atggggcttc ctttttttgt tttgtc
//
LOCUS       DAWGNT010000129         5548 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.129, whole genome shotgun sequence.
ACCESSION   DAWGNT010000129 DAWGNT010000000
VERSION     DAWGNT010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5548
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.129"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(328..1587)
                     /gene="rho"
                     /locus_tag="WHR98_001569"
     CDS             complement(328..1587)
                     /gene="rho"
                     /locus_tag="WHR98_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEZ2308230.1"
                     /translation="MHVSELQTLHISKLLELAEEHGIENANRFRKQDLVFAIVRQMMK
                     QNVSFTCSGTLEILPDGFGFLRSADTSYLAGPDDIYVSPTQIRRFNLHTGDTIEGSVR
                     VPKDNERYFALVRLDTINGDHPEVCRHKILFENLTPLFPTEQLKLERDLKSEENLTGR
                     AIDLISPIGKGQRALLVAPPKSGKTVMLQNIAHAVTANYPEVELIVLLIDERPEEVTE
                     MSRSVRGEVVSSTFDEPAQRHVQVAEMVLEKAKRMVEHKKDVVILLDSITRLARAYNT
                     VVPTSGKILTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVETGSRMDDVIYEE
                     FKGTGNMELHLDRRMAEKRLFPAININKSGTRREELLVPNDQLQRMWLLRKFLHPMDE
                     IEATEFLNGKIKASKNNDDFFELMRGK"
     gene            complement(1807..4191)
                     /gene="ppsA"
                     /locus_tag="WHR98_001570"
     CDS             complement(1807..4191)
                     /gene="ppsA"
                     /locus_tag="WHR98_001570"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HEZ2308231.1"
                     /translation="MADNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGG
                     FATTADAYRAFLAHNGLSERISAALAKLDVEDVAELARVGKEIRQWILDTPFPEQLDA
                     EIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLDNVKEAMHH
                     VFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVF
                     VTSSYGLGENVVQGAVNPDEFYVFKPTLKAGKPAILRKTMGSKHIKMIFTDKAEAGKS
                     VTNVDVPEEDRNRFSITDEEITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQAR
                     PETVKSQEEGNRNLRRFAINGDKTVLCEGRAIGQKVGQGKVRLIKDASEMDSVEAGDV
                     LVTDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATELLKNGQE
                     VTVSCAEGDTGFIYAGLLDVQITDVALDNMPKAPVKVMMNVGNPELAFSFANLPSEGI
                     GLARMEFIINRQIGIHPKALLEFDKQDDELKAEITRRIAGYASPVDFYVDKIAEGVAT
                     LAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFA
                     LECKALKRVRDEMGLTNVEIMIPFVRTLGEAEAVVKALKENGLERGKNGLRLIMMCEL
                     PSNAVLAEQFLQYFDGFSIGSNDMTQLTLGLDRDSGLVSESFDERNPAVKVMLHLAIS
                     ACRKQNKYVGICGQGPSDHPDFAKWLVEEGIESVSLNPDTVIETWLYLANELNK"
     gene            4602..5423
                     /locus_tag="WHR98_001571"
     CDS             4602..5423
                     /locus_tag="WHR98_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HEZ2308232.1"
                     /translation="MSSPRHVFYISDRTGLTAENIGEALLNQFGNLSFKRHTHPFVDT
                     PEKARAVVEKVNRSRQENGQRPIAFVSVVDDEIRRIIKGADAFQINFFETFLGLLEKE
                     LNTEATASEQGHHSIGNTKRYDARMEAVNFSLNHDDGVSDKNLQEADVILMGVSRSGK
                     TPTCLYLALQYGIRAANYPLIPDDLESADLPRMVKPYRDKLFGLTIQPERLQAIRQER
                     RPNSTYAKIDTCRSEVADAQSMFRRHGIPFANTTDKSVEELAVHILQACKLKRRF"
BASE COUNT         1207 a         1302 c         1601 g         1438 t
ORIGIN      
        1 ggcttagacg actttttctc ataggggcaa ctctaactta atttgaattt ccctagttat
       61 ctaggacagc cccaaattta tacaaaaatg agcgcggttc ggcgcaacct tgaatcaagt
      121 tcccgcatcg gttttcattg ccggtacgga tgcgttcaag ccggtttttc aaaggccgcg
      181 ctttcggcaa gcggacacgg acactgccga cggttgcgcc gttaacgggg ggagggagga
      241 gctgcgccga ccgtgtgaat gaaagtgccg tctgaaaccc gattttcagg cttcagacgg
      301 catttcgcat taatgcgggc ggcgcgttta tttgccgcgc atcagttcaa agaaatcgtc
      361 gttgttttta gaggctttga ttttcccgtt taagaactcg gtagcttcga tttcatccat
      421 cgggtgcagg aacttgcgta agagccacat acgttgcaac tggtcgttcg gcacaagcag
      481 ctcttcgcgg cgcgtgccgg atttgttgat gttgatggcg gggaagaggc gtttttccgc
      541 catacggcga tcaaggtgca attccatatt gccggtgcct ttgaattctt cgtaaatcac
      601 atcgtccata cggctgccgg tttcaaccaa tgcggtggcg ataatggtca gcgaaccgcc
      661 ttcttccacg ttgcgcgccg caccgaagaa acgtttgggg cggtgcagcg cgttggcatc
      721 gacaccgccg gtcaggattt tgcccgaggt ggggacgacg gtattgtagg cgcgggcaag
      781 gcgggtaatc gaatccagca ggatgaccac gtcttttttg tgttccacca tacgcttggc
      841 tttttcaagc accatttcag caacttggac gtggcgttgc gccggttcgt caaaggtgga
      901 ggaaaccact tcgccgcgga cggaacggct catttcggtt acttcttcgg gacgctcgtc
      961 aatcaagagg acgatgagtt cgacttcggg atagtttgcg gtaacggcgt gggcaatatt
     1021 ttgcagcatc acggttttac cgcttttggg cggggcaacc aagagggcgc gctgaccttt
     1081 gccgatgggg gaaatcaggt cgatggcgcg tccggtcagg ttttcttcgg actttaagtc
     1141 gcgttccagc ttcaactgtt cggtcggaaa cagcggggtc aggttttcaa acaggatttt
     1201 atggcggcat acttccgggt ggtcgccgtt gatggtatcg aggcggacaa gcgcgaaata
     1261 acgctcgttg tctttaggca cgcgcacgct gccttcgatg gtgtcgccgg tgtgcagatt
     1321 gaagcggcgg atttgcgtgg gcgaaacata aatatcgtca gggccggcaa ggtaagaagt
     1381 atctgcgctg cgcaggaaac cgaagccgtc aggcaggatt tctagcgtac cggaacaggt
     1441 aaagctgaca ttctgtttca tcatctggcg gacgatggca aaaacgaggt cttgtttgcg
     1501 gaaacggttg gcgttttcga tgccgtgttc ttccgccaat tctaagagtt tggaaatgtg
     1561 cagggtttgt aattcggaga cgtgcataat aatgatgtat tttgaagagg aaaaagacag
     1621 gcagatgccg tctgaaagaa gaagctgacc gttgccggtt gctcggggaa aggggaattg
     1681 taggcagtcg gcgcgtgggt gtcaaatatt atcgcggacg gggcatcggc aggaaatgcc
     1741 gtctgagcgg agctgcttgg aaaaaaatac ccccgcgctt ttcaggctcg ggggtatggg
     1801 cattgattat ttgttcaatt cattcgccaa atacagccaa gtttcgatga cggtatccgg
     1861 gttcagggaa acgctttcaa tgccttcctc aaccagccat ttggcgaagt ccggatggtc
     1921 ggacgggcct tgaccgcaga tgccgacata tttgttctgc ttgcggcagg cggagatggc
     1981 aaggtgcagc atcactttga cggcagggtt gcgttcgtca aacgattcgg ataccaagcc
     2041 gctgtcgcgg tcgagaccga gggtcagttg ggtcatgtcg ttcgagccga tggagaagcc
     2101 gtcgaagtat tgcaggaatt gttccgccaa taccgcgttg ctcggcagct cgcacatcat
     2161 aatcaggcgc aggccgtttt tgccgcgttc caagccgttt tctttcaggg ctttgacaac
     2221 ggcttcggct tcgcccaagg tgcggacgaa cggaatcatg atttcaacgt tggtcaaccc
     2281 catttcatcg cggacgcgtt tcaaggcttt gcattccaag gcgaaacagt ctttgaagtt
     2341 gtcggcgaca taacgcgccg cgccccggaa gcccaacatc gggttttctt catgcggttc
     2401 gtatacgttg ccgccgacca ggttggcgta ttcgttggat ttgaagtcgg acatacggac
     2461 gatggtttta cgcggataaa ccgatgcggc caaagttgcc acgccttctg cgattttatc
     2521 gacgtagaag tcgacagggg acgcatagcc agcgatgcgg cgggtaattt ccgctttcaa
     2581 ttcgtcgtct tgtttgtcaa attccaacaa ggctttgggg tggataccga tttggcggtt
     2641 gatgataaat tccatacgcg ccaagccgat gccttcgctg ggcaggttgg cgaagctgaa
     2701 tgcgagttcg ggattgccga cgttcatcat gactttaacc ggtgctttgg gcatattgtc
     2761 taaggcgaca tcggtaatct gtacgtccaa cagaccggca tagataaagc cggtatcgcc
     2821 ttcggcacag gatacggtaa cttcttgacc gtttttcagc aattcggttg cattgccgca
     2881 gccgacaacg gcaggaatgc ccaattcacg cgcgatgatg gcggcgtggc aggtacggcc
     2941 gccgcggttg gtcacgatgg cagaagcacg tttcatcacg ggttcccaat ccggatcggt
     3001 catgtcggta acgagtacgt cgccggcttc gacggaatcc atctcggaag catctttaat
     3061 caggcgcacc ttgccctgac cgactttctg accgatggcg cggccttcgc ataatacggt
     3121 tttgtcgccg ttgatggcga agcggcgcag gttgcggttg ccctcttctt gggattttac
     3181 ggtttcggga cgggcttgca ggatgtagag tttgccgtcc aagccgtcgc gtccccattc
     3241 gatatccatc gggcggccgt agtgtttttc gatggtcagt gcgtaatgcg ccaactcagt
     3301 aatttcttcg tcggtaatgg agaagcggtt gcggtcttcc tcggggacat cgacgttggt
     3361 tacggattta ccggcttctg ctttgtcggt aaaaatcatt ttgatgtgtt ttgaacccat
     3421 ggttttacgc aggatggcgg gcttgcccgc tttgagcgtg ggtttgaaca cataaaattc
     3481 gtccgggttg accgcacctt gtacgacgtt ttcgcccaga ccgtaagagg aggtaacaaa
     3541 gacgacttga tcgtagccgg attcggtgtc gagggtgaac atcacacctg atgcgccgct
     3601 gtcggaacgc accatgcgtt gaacgccggc ggaaagggcg acgatgtcgt gttcgaagcc
     3661 tttgtggaca cggtaagaaa tggcacggtc gttatacagg gaagcgaata catggtgcat
     3721 cgcttcttta acgttatcca agccgttgat gttcaagaag gtttcctgtt gtccagcgaa
     3781 tgatgcgtcc ggcaggtctt cggcagttgc ggaagaacgt acggcaacgg aaatgtccgc
     3841 accgccggca tcggcaacca ttttgttcca tgccgcttcg atttcggcat cgagctgttc
     3901 ggggaaaggc gtatccaaaa tccattggcg gatttctttg ccgacgcgtg ccagttcggc
     3961 aacgtcttcg acatccaatt ttgccagtgc ggcggaaatg cgttcgctca gaccgttgtg
     4021 tgcgaggaat gcgcggtagg catcggctgt ggtggcaaag ccgccgggga cgcgaacgcc
     4081 tttttcggtc agctgactga tcatttcgcc cagcgaggcg tttttaccgc ccacgcgttc
     4141 aacatctgtc atacgcaggt tttcaaacca gattacgtag ttgtcggcca tttgtgtgtc
     4201 caatccaaaa tatgttaaaa aagaaacaaa tccgcgtgct tattttaagc gattcgttcc
     4261 tctgctgtca tgtgttttat ccattttaaa atcatgatgc cgtctgaaaa attgcggttt
     4321 cggcgtgtgt agcggtttga aacttgcagc cggtatactt ctttttttgg gtattttctt
     4381 tgtaaaacag gtggtttgaa taggttaatg ttttttctgt ttgatttttt tgtttatttt
     4441 ttaaaatttt ctgccaaaaa atactttata taaataattt tatttcaaaa ttatattgtg
     4501 tctgtttggg tgtaatccga ggtaggcgtg ctgcgggtgc tttccttgtg tctgccgctg
     4561 ctgttatgat gatattttta ttctgtattt aaggatggaa gatgagcagt ccgcgccatg
     4621 tgttttacat ttccgaccgt accggtctga ctgccgagaa tatcggcgag gctttgctga
     4681 accagtttgg caatctgtcg ttcaaacgcc atacgcatcc gtttgtcgat acgccggaaa
     4741 aggcgcgcgc ggtggtggag aaggtcaatc ggagccggca ggaaaacggt cagcgtccga
     4801 ttgcgtttgt cagtgtggtt gatgacgaaa tccgtcggat tatcaaaggg gcggatgctt
     4861 ttcagattaa tttctttgag acttttttgg gactgttgga gaaagaactc aataccgaag
     4921 ccacggcatc cgagcagggg catcacagta tcggtaatac gaagcgttac gatgcgcgta
     4981 tggaggcggt gaatttctca ttgaaccacg atgacggggt cagcgataag aaccttcagg
     5041 aagcggatgt aatcttgatg ggtgtatcgc gttcgggcaa aacgccgacc tgcctttacc
     5101 tcgccctgca atacggcatc cgtgcggcaa actatccgct gattcccgac gatttggaat
     5161 cggccgatct gccgcgtatg gtcaagcctt atagggataa gctgttcggg ttgaccatcc
     5221 agccggaacg tttgcaggcc atccgccaag agcgccgccc gaattcaact tatgccaaaa
     5281 tcgatacatg ccgcagcgag gtggcggacg cgcagagtat gttcagacgg catggcattc
     5341 cgtttgcgaa tacgacggat aaatcagtgg aagagcttgc cgtacacatc cttcaggcgt
     5401 gcaagctcaa acgcaggttt tgacgggctt tgattcggtt tgaaggcgga aatgccgtct
     5461 gaaatcaggt ttcagacggc agttttatag tggattaaca aaaatcagga caaggcgacg
     5521 aagccgcaga cagtacaaat agtacgga
//
LOCUS       DAWGNT010000130         5545 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.130, whole genome shotgun sequence.
ACCESSION   DAWGNT010000130 DAWGNT010000000
VERSION     DAWGNT010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5545
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.130"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            27..1364
                     /locus_tag="WHR98_001572"
     CDS             27..1364
                     /locus_tag="WHR98_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEZ2308233.1"
                     /translation="MSNHTSWSSKIGFVLAAAGSAIGLGAIWKFPYTAGTNGGAVFFL
                     LFLIFTVLVALPVQLAEFYIGRTGGKNAVDSFRALRPSTQWLWVGRMGVSACFILLSF
                     YSVVGGWVLNYVVHSFTGAVHTGADFEALFGTTISNPAGSLSYQALFMLITVWVVKGG
                     ISDGIEKANRYLMPGLFILFIALAIRSLTLPGAMEGVSFLLKPNWLYFKADTMITALG
                     QAFFALSIGVSAMITYASYLGKDQDMFRSGHTIMWMNLLVSLLAGLVIFPAVFAFGFE
                     PSQGPGLIFIVLPAVFMKMPFGTVLFAVFMLLVVFATLTSAFSMLETVIASTIRQDER
                     KRKKHTWLIGTAIFIVGIPSALSFGVWGEFKVFGKTIFDLWDYVISAVIMPIGALSVS
                     IFTAWIQDKQSVLKDAGAGSTVPRAVLLLWLNTLRYLAPIAIIIVFVNSLGIL"
     gene            complement(1426..2190)
                     /locus_tag="WHR98_001573"
     CDS             complement(1426..2190)
                     /locus_tag="WHR98_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEZ2308234.1"
                     /translation="MFSLYREDSLISRLNRDGYLTSPSADFLELLSLCRDIHALTEGA
                     FDPTVQVLWKLYADYFSAHPDAETPPPQNSVDEALKRVGFGKVSFDDREIRFTEKGMG
                     LSLNGIAQGYITDKVVALLKANGVPAALVDMGEIRGFDTNGRRTWNVGIRNPDDEEGV
                     LANITMKDKAFATSGGYGTVMDKAGRFTHLFDPRTGVSTPRYKSISVMADDAAVADAL
                     STAFSIMDLHLIRSVAESRQLKVWLLMPDNTLNEIG"
     gene            complement(2171..2452)
                     /locus_tag="WHR98_001574"
     CDS             complement(2171..2452)
                     /locus_tag="WHR98_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEZ2308235.1"
                     /translation="MGRHFGRRRFLTAAAVAAAGAAVSFLPNPFAADDEKRNGDEKRS
                     ENVFFWKGVALGSGAELRLFGVDDRRAADLVNKVLAEVARLEKIVQPLP"
     gene            complement(2461..3255)
                     /locus_tag="WHR98_001575"
     CDS             complement(2461..3255)
                     /locus_tag="WHR98_001575"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEZ2308236.1"
                     /translation="MKAYLDLMRHVLDNGTDKSDRTGTGTRSVFGYQMRFDLGKGFPL
                     LTTKKLHLRSIIHELLWFLKGDTNIKYLKDNNVSIWDEWADENGDLGPVYGYQWRNWP
                     APDGRHIDQIANVLEQIKKNPDSRRLIVSAWNPALVDEMALPPCHALFQFYVADGKLS
                     CQLYQRSADIFLGVPFNIASYALLTMMMAQVCGLEAGEFVHTFGDAHLYRNHFEQAAL
                     QLEREPRALPVMKINPEVKDLFSFKFEDFELEGYDPHPHIKAAVSV"
     gene            3639..4973
                     /gene="gdhA"
                     /locus_tag="WHR98_001576"
     CDS             3639..4973
                     /gene="gdhA"
                     /locus_tag="WHR98_001576"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEZ2308237.1"
                     /translation="MTDLNTLFANLKQRNPNQEPFHQAVEEVFMSLDPFLAKNPKYTQ
                     QSLLERIVEPERVVMFRVTWQDDKGQVQVNRGYRVQMSSAIGPYKGGLRFHPTVDLGI
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMTELYRHIGADTD
                     VPAGDIGVGGREIGYLFGQYKKIRNEFSSVLTGKGLEWGGSLIRPEATGYGCVYFAQA
                     MLQTRNDSFEGKRVLISGSGNVAQYAAEKAIQLGAKVLTVSDSNGFVLFPDSGMTEAQ
                     LAALIELKEVRRERVATYAKEQGLQYFENQKPWGVAAEIALPCATQNELDEEAAKTLL
                     ANGCYVVAEGANMPSTLGAVEQFIKAGILYAPGKASNAGGVATSGLEMSQNAIRLSWT
                     REEVDQRLFGIMQSIHESCLKYGKVGDTVNYVNGANIAGFVKVADAMLAQGF"
     gene            5115..5489
                     /locus_tag="WHR98_001577"
     CDS             5115..5489
                     /locus_tag="WHR98_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308238.1"
                     /translation="MIMDQYYMELKNKLSNRPILLDNTNDFLFVLVNTVKAMIENTDK
                     SQLSELDKILDGVTSQELKLAYDFCQGKFGQAGFSYRRHPNYFYLSSLIATFPEFELS
                     KADRDYLKGIINFDNYLLYELD"
BASE COUNT         1362 a         1465 c         1329 g         1389 t
ORIGIN      
        1 tatcttcaca tttcttaata aattttatga gtaaccatac ttcttggtcg tccaaaatcg
       61 gtttcgtgct tgctgcggca ggttcggcca tcggtttggg cgcgatttgg aaatttcctt
      121 atacggcagg caccaacggc ggcgcggtgt ttttcctgct gtttttgata tttaccgtct
      181 tggtcgccct gcccgtccag cttgccgagt tttatatcgg gcgcacaggc ggtaaaaatg
      241 ccgtcgattc cttcagggct ctgcgtccga gtacgcaatg gctttgggtc gggcgcatgg
      301 gcgtttccgc ctgctttatt ttgctgtcgt tttacagcgt ggtcggcgga tgggtattaa
      361 attatgtcgt ccacagtttc acgggggcgg ttcataccgg cgcggacttt gaagccctgt
      421 tcggcacaac gatttccaat ccggcaggtt cgctgtccta tcaggcactg tttatgctga
      481 ttacggtttg ggtggtcaaa ggcgggattt cagacggcat tgaaaaggca aaccgttatc
      541 tgatgccggg gctgtttatc ctctttattg cactggcaat ccgttcgctg acgctgccgg
      601 gggcaatgga gggcgtgtct ttcctgctca aaccgaattg gttgtacttt aaagccgata
      661 cgatgattac ggctttaggc caggcgtttt ttgccttgag catcggcgtt tccgccatga
      721 ttacctacgc ttcgtatttg ggaaaagatc aggatatgtt ccgttccggc catacgatta
      781 tgtggatgaa cctcttggtt tcgctgcttg ccggcttggt gattttcccg gcggtattcg
      841 ccttcggttt tgaaccgagc caggggccgg gattgatttt tatcgtattg cccgcagtgt
      901 ttatgaagat gccgttcggt acggttttgt ttgcggtatt tatgctgctg gtcgttttcg
      961 ccacgctgac ttcggcattt tcgatgttgg aaacggtcat tgcctcaacc atccgccaag
     1021 acgagcgcaa acgcaaaaaa cacacttggc ttatcggcac ggccattttc attgtcggca
     1081 tcccatccgc gctgtctttc ggcgtatggg gcgagtttaa ggttttcggc aaaaccattt
     1141 ttgatttgtg ggactatgtt atttccgccg tcattatgcc gattggtgct ttgagtgttt
     1201 ccatctttac cgcctggatt caggacaagc agtctgtgtt aaaagatgcc ggcgcgggca
     1261 gcaccgtacc acgggcagtg ctgctgctgt ggctgaatac cttgcgctac ctcgccccga
     1321 ttgccattat tatcgttttc gtcaattctt tgggcatcct ttaaaagccc tccaaacggc
     1381 aaaaatgccg tctgaaagcc tttcagacgg cattttgctt caagttcagc ctatttcgtt
     1441 caaagtattg tccggcatca gcagccaaac cttaagctgc ctgctttcgg caaccgaccg
     1501 tatcaagtgc agatccataa tggaaaacgc cgtcgacaag gcatcggcaa ccgccgcatc
     1561 atccgccatt acgctgatgc ttttataacg cggcgtactc acgccggttc gcggatcgaa
     1621 caaatgggta aacctgcccg ctttgtccat caccgtccca tagccgcccg aagtggcaaa
     1681 cgctttgtct ttcatcgtga tatttgccaa cacgccttct tcgtcgtccg gattgcggat
     1741 gccgacattc caagtccgcc tgccgtttgt atcaaacccc ctgatttcgc ccatatcgac
     1801 cagcgcggca ggcacgccat ttgctttcag caacgcgacg accttatccg taatatagcc
     1861 ttgcgcgatg ccgttcaagg acaaacccat acccttttcg gtaaaacgga tttcacggtc
     1921 gtcaaacgag actttgccga agccgacccg cttcagggct tcgtccacgc tgttttgagg
     1981 cggcggcgtt tccgcatcgg gatgggcgga aaaataatcg gcatacagtt tccacaaaac
     2041 ctgaaccgtc ggatcgaacg cgccttccgt cagcgcgtga atatcgcggc acaggctcaa
     2101 cagttccaaa aaatccgccg acggcgaagt cagataaccg tccctgttca ggcggctgat
     2161 caggctgtct tcacggtaaa ggctgaacaa ttttttccaa acgcgccact tccgccaaaa
     2221 ccttgttgac caaatccgcc gcacgcctgt cgtccacacc gaacagacgg agctccgcac
     2281 cggaacccag tgcgacacct ttccagaaaa acacattttc actgcgtttt tcatccccgt
     2341 tgcgtttttc atcatcggcg gcaaaaggat tcggcaaaaa agaaaccgcc gcgcccgccg
     2401 ccgcaacggc ggcagccgtc aaaaaacgcc tgcgcccgaa atgcctgccc ataccgcctc
     2461 ctaaaccgac actgccgcct tgatgtgcgg atgcggatcg tagccttcca actcgaaatc
     2521 ttcaaacttg aaggaaaaca aatctttgac ttcaggattg attttcatca ctggcaaggc
     2581 gcgcggttcg cgttccaact gcaatgcggc ctgctcgaaa tggttgcggt acaaatgcgc
     2641 gtcgccaaac gtatggacaa actcgcccgc ctccagcccg cacacttgcg ccatcatcat
     2701 cgtcaacagc gcgtagctgg caatattaaa cggcacacca aggaaaatat ctgcactacg
     2761 ctggtaaagc tggcaggaca gtttgccgtc ggcaacgtaa aactgaaaca gcgcgtggca
     2821 gggcggcaag gccatttcat cgaccaaagc cggattccac gccgatacaa tcaggcggcg
     2881 cgagtcggga ttcttcttga tttgttccag cacattggcg atttggtcga tatgcctgcc
     2941 gtcgggcgcg ggccagttac gccactggta gccgtaaacc gggcctaagt cgccgttttc
     3001 gtccgcccac tcgtcccaaa tggaaacatt gttgtccttt aggtatttga tattggtatc
     3061 gcctttgaga aaccaaagca gctcgtggat aatcgaacgc agatgcagct ttttggtcgt
     3121 cagcagcgga aaacctttgc ccaagtcaaa acgcatctga taaccgaata cggagcgcgt
     3181 acccgtaccg gtgcggtctg atttgtccgt accgttgtcg aggacgtggc gcatcaagtc
     3241 caaataggct ttcatagcag tctttcatca aattaaacgg cgcatattgt aacatttccg
     3301 gataatgccc aaaacacgga tacaggcagg caggattgtt ggcaatttca gtccttttcc
     3361 acagtaaaac ccggtgggaa aacaaaatta ccttgattgg aatcaaaaaa tctagtttaa
     3421 ttacttagaa taaaatttca ataatatttt tatttacgaa attaatttat gattattgat
     3481 tgattatcgg caacaaacat caaacatcga aaatatggaa aaaataatgt caacaatttt
     3541 tgccaaatcg ggcttggcat cagaaaaaaa taggtttata ttcccaccta caaatttgtt
     3601 ttcccattag tacactatca accaaaagga gtatccgaat gactgacctg aacaccctgt
     3661 ttgccaacct caaacaacgc aatcccaatc aggagccgtt ccatcaggcg gttgaagaag
     3721 tcttcatgag tctcgatccg tttttggcaa aaaatccgaa atacacccag caaagcctgc
     3781 tggaacgcat cgtcgaaccc gaacgcgtcg tcatgttccg cgtaacctgg caggacgata
     3841 aagggcaagt ccaagtcaac cggggctacc gtgtgcaaat gagttccgcc atcggtcctt
     3901 acaaaggcgg cctgcgcttc catccgaccg tcgatttggg catattgaaa ttcctcgctt
     3961 ttgaacaagt gttcaaaaac gccttgacca ccctgcctat gggcggcggc aaaggcggtt
     4021 ccgacttcga ccccaaaggc aaatccgatg ccgaagtaat gcgcttctgc caagccttta
     4081 tgaccgaact ctaccgccac atcggcgcgg acaccgatgt tccggccggc gacatcggcg
     4141 taggcgggcg cgaaatcggc tacctgttcg gacaatacaa aaaaatccgc aacgagtttt
     4201 cttccgtcct gaccggcaaa ggtttggaat ggggcggcag cctcatccgt cccgaagcga
     4261 ccggctacgg ctgcgtctat ttcgcccaag cgatgctgca aacccgcaac gatagttttg
     4321 aaggcaaacg cgtcctgatt tccggttccg gcaacgtggc gcaatacgcc gccgaaaaag
     4381 ccatccaact gggcgcgaaa gtgctgaccg tttccgattc caacggcttc gtcctcttcc
     4441 ccgacagcgg tatgaccgaa gcgcaactcg ccgccttgat cgaattgaaa gaagtccgcc
     4501 gcgaacgcgt tgccacctac gccaaagagc aaggtctgca atactttgaa aaccaaaaac
     4561 cgtggggcgt cgccgccgaa atcgccctgc cctgcgcgac ccagaacgaa ttggacgaag
     4621 aagccgccaa aaccctgttg gcaaacggct gctacgtcgt tgccgaaggt gcgaatatgc
     4681 cgtcgacttt gggcgcggtc gagcaattta tcaaagccgg catcctctac gccccgggaa
     4741 aagcctccaa tgccggcggc gtagcaactt caggtttgga aatgagccaa aacgccatcc
     4801 gcctgtcttg gactcgtgaa gaagtcgacc aacgcctgtt cggcatcatg caaagcatcc
     4861 acgaatcctg tctgaaatac ggcaaagtcg gcgacacagt aaactacgtc aatggtgcga
     4921 acattgccgg tttcgtcaaa gttgccgatg cgatgctggc gcaaggcttc taagcaaacg
     4981 ccgccgctcc gcaaacaaaa tgccgtccga accgcaaatg ctgttcagac ggcatttcat
     5041 tatccgcccg ttcgaatcgg gtgatactat ttgtatccag aattgttgga tagtttggga
     5101 gtggagagga agaaatgatt atggaccaat actatatgga gttaaagaat aagttatcta
     5161 acagaccaat cctactggat aatactaatg attttctttt tgttttagta aatacagtga
     5221 aagctatgat agaaaatact gataaaagtc agctttcaga gttagataaa attttagacg
     5281 gtgtcacaag tcaagaattg aaacttgcct atgatttttg tcaagggaaa ttcggtcaag
     5341 caggtttttc ttatcgtagg cacccgaatt atttttattt gtccagttta attgcgactt
     5401 ttccagaatt tgagttgtct aaagcagacc gagattacct caaaggaatc ataaattttg
     5461 ataactacct tttatatgag ttagattagt ctttaatcac ctcaaaaccc tatttattca
     5521 aaaggagaaa aaatgattga gctga
//
LOCUS       DAWGNT010000131         5403 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.131, whole genome shotgun sequence.
ACCESSION   DAWGNT010000131 DAWGNT010000000
VERSION     DAWGNT010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5403
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.131"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(643..2919)
                     /locus_tag="WHR98_001578"
     CDS             complement(643..2919)
                     /locus_tag="WHR98_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEZ2308239.1"
                     /translation="MAQTTLKPIVLSILLINTPLLAQAHETEQSVDLETVSVVGKSRP
                     RATSGLLHTSTASDKIISGDTLRQKAVNLGDALDGVPGIHASQYGGGASAPVIRGQTG
                     RRIKVLNHHGETGDMADFSPDHAIMVDTALSQQVEILRGPVTLLYSSGNVAGLVDVAD
                     GKIPEKMPENGVSGELGLRLSSGNLEKLTSGGINIGLGKNFVLHTEGLYRKSGDYAVP
                     RYRNLKRLPDSHADSQTGSIGLSWVGEKGFIGVAYSDRRDQYGLPAHSHEYDDCHADI
                     IWQKSLINKRYLQLYPHLLTEEDIDYDNPGLSCGFHDDDNAHAHTHSGRPWIDLRNKR
                     YELRAEWKQPLPGFEALRVHLNRNDYRHDEKAGDAVENFFNNQTQNARIELRHQSIGR
                     LKGSWGVQYLQQKSSALSATSEAVKQPMLLDNNVQHYSFFGVEQAEWDNFTLEGGVRV
                     EKQKASIRYDKALIDRENYYKQPLPDLGAHRQTARSFALSGNWYFTPQHKLSLTASHQ
                     ERLPSTQELYAHGKHVATNTFEVGNKHLNKERSNNIELALGYEGDRWQYNLALYRNRF
                     GNYIYAQTLNDGRGPKSIEDDSEMKLVRYNQSGADFYGAEGEIYFKPTPRYRIGVSGD
                     YVRGRLKNLPSLPGREDAYGNRPFIAQDDQNAPRVPAARLGFHLKASLTDRIDANLDY
                     YRVFAQNKLARYETRTPGHHMLNLGANYRRNTRYGEWNWYVKADNLLNQSVYAHSSFL
                     SDTPQMGRSFTGGVNVKF"
     gene            3329..3919
                     /locus_tag="WHR98_001579"
     CDS             3329..3919
                     /locus_tag="WHR98_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEZ2308240.1"
                     /translation="MLLFIDNYDSFTYNIVQYFTELGQEVAVRRNDDITLEEIEALNP
                     QYLVIGPGPCSPKEAGISVAAMRHFAGRLPIMGVCLGHQTIGEAFGGRVVRAKTLMHG
                     KVSPVSHSGKGMFKGLPNLVTCTRYHSLVIDRNTMPECLEVTAWTEDGEIMGVRHKEY
                     AVEGVQFHPEALLTEHGHDMLNNFLIEFQNFKPQKI"
     gene            3983..5041
                     /gene="trpD"
                     /locus_tag="WHR98_001580"
     CDS             3983..5041
                     /gene="trpD"
                     /locus_tag="WHR98_001580"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEZ2308241.1"
                     /translation="MITPQQAIERLISNNELFYDEMTDLMRQIMRGQVLPEQIAAILT
                     GLRIKVETVSEITAAAAVMREFATKVPLENAEGLVDIVGTGGDGAKTFNISTTSMFVA
                     AAAGAKVAKHGGRSVSSSSGAADVVEQMGANLNLTPEQVAQSIRQTGIGFMFAPNHHS
                     AMRHVAPVRRSLGFRSIFNILGPLTNPAGAPNQLLGVFHTDLCGILSRVLQQLGSKHV
                     LVVCGEGGLDEITLTGKTRVAELKDGKISEYDIRPEDFGIETRRNLDEIKVANTQESL
                     LKMNEVLEGREGAARDIVLLNTAAALYAGNVAASLSDGISAAREAIDSGRAKSKKEEF
                     VGFQPQQRCHFLGKMELG"
     gene            complement(5193..>5403)
                     /locus_tag="WHR98_001581"
     CDS             complement(5193..>5403)
                     /locus_tag="WHR98_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEZ2308242.1"
                     /translation="YTVIVPNAQSATLLPIIRKKVKPDGIVYTDTFRSYDVLDISEFS
                     HLRKFNGIPKEHLGLHLKKCQWHLK"
BASE COUNT         1298 a         1237 c         1486 g         1382 t
ORIGIN      
        1 ggaatgacaa ctcattagtt acctaaaact taaaaaacag aaacctttac accgtcattc
       61 ccacgaaagt gggaatccgg gaacttaacg ttacagtgat ttatcggaaa taacagaaac
      121 cgaacgaatt ggattcccgc ctgcgcggga atgacgactt attagttacc taaaacttaa
      181 aaaacagaaa cctttacgcc gtcattccca cgaaagtggg aatctaaaac ccaaatgcta
      241 aggcgattta tcggaaacgg ctgaaaccga acgaattgga ttcccgcctg cgcgggaatg
      301 atggcacatt agttacctaa aacttaaaaa acagaaacct ttacgccgtc attcccacga
      361 aagtgggaat ccgggaactt aacgttacga cgatttatcg gaaacggctg aaaccgaatg
      421 aattggattc tcgcctgcgc gggaatgatg ggtttctgct tttgattttt ctgcttttgc
      481 gagaatgacg gcgtgaaagc aagaatgatg aaacaaagaa aatgggaatg atggcatagt
      541 ggtttgttct ttgtctttgc catatttcct aacaaattga ttaaaaagaa aaaaggtttt
      601 cagaatgccg tctgaaaacc ttttttgttt gcctgtccga ttttaaaact tcacgttcac
      661 gccgccggta aagctgcggc ccatttgcgg cgtatcagag agaaagctgc tgtgggcgta
      721 aacggattgg ttgagcaggt tgtcggcttt gacgtaccaa ttccactcgc catagcgcgt
      781 attgcggcgg tagtttgcgc cgaggttgag catatggtgt ccgggcgtac gtgtttcgta
      841 gcgggcgagt ttgttttggg cgaacacgcg gtagtagtcc aaattggcat cgatacggtc
      901 ggtcagcgag gctttcaggt ggaagccgag gcgcgcagcc ggaacgcgag gggcgttttg
      961 gtcgtcctgc gcgatgaaag gacggttgcc gtaggcatct tccctgccgg gtagggaagg
     1021 caggtttttc agacggcctc gtacatagtc gccggaaacg ccgatgcggt agcgcggtgt
     1081 cggtttgaag tagatttctc cttccgcgcc gtagaagtcg gcgccggatt ggttgtagcg
     1141 cacgagcttc atttcgctgt cgtcttcgat ggatttgggg ccgcgtccat cgtttaaggt
     1201 ttgggcgtaa atgtagttgc cgaagcggtt gcggtagagt gccagattgt attgccagcg
     1261 gtcgccttcg tagcccaacg cgagttcgat attgttggaa cgctctttgt tcaggtgttt
     1321 gttgccgact tcaaaagtgt tggtggcaac gtgtttgccg tgtgcgtaca gctcttgcgt
     1381 tgacggcagg cgttcctgat gggaggcggt caggctgagt ttgtgttgtg gcgtgaaata
     1441 ccagttgccc gaaagtgcga atgagcgggc ggtttggcgg tgcgcgccga ggtcgggcag
     1501 gggctgcttg tagtagtttt cccgatcaat caatgccttg tcgtaccgga tggaagcttt
     1561 ttgtttttcc acgcgtacgc cgccttcaag cgtgaagttg tcccattctg cctgttctac
     1621 accgaaaaag ctgtaatgtt gcacattgtt gtcaagcagc atcggttgtt tgaccgcttc
     1681 ggatgtggca gataaagcac tggatttttg ctgtaaatat tgcacgcccc agctgccttt
     1741 cagacggcct atggattggt ggcgcaactc gatacgggcg ttttgcgttt ggttgttgaa
     1801 gaagttttct actgcatcgc ctgctttttc gtcgtggcgg tagtcgttgc ggttcaggtg
     1861 tacgcgcagg gcttcaaaac cggggagcgg ctgcttccat tcggcgcgga gttcgtaacg
     1921 tttgttgcgc aggtctatcc acggtctgcc gctgtgggtg tgtgcgtgtg cattatcgtc
     1981 gtcgtggaag ccgcagctca agcccggatt gtcgtaatcg atgtcttctt cggtcaacag
     2041 gtgcggataa agctgtaaat agcgtttgtt aatcaagctc ttttgccaga tgatgtcggc
     2101 gtggcaatca tcgtattcgt ggctgtgggc aggcagacca tattggtcgc gacggtcgct
     2161 gtacgctacg ccgataaaac ctttttcgcc aacccaagac agcccgatgc tgcccgtttg
     2221 cgaatcggcg tggctgtcgg gcaggcgttt cagattgcgg taacgcggta cggcgtaatc
     2281 ccccgatttg cggtacagcc cttccgtgtg caatacaaag tttttgccca aaccgatatt
     2341 gatgccgccg gacgtgagtt tttccagatt gccgctgctc aaacgcaatc cgagttcgcc
     2401 cgatacgccg ttttcaggca ttttttcggg gattttgcca tcggcaacat cgaccagccc
     2461 cgccacattg cccgagctgt acaagagcgt aaccggcccg cgcaggattt cgacctgttg
     2521 cgacaaggcg gtatctacca taatggcgtg atcgggcgaa aaatccgcca tatcgcctgt
     2581 ttcgccgtga tggttcaaca ctttaatccg cctgcctgtt tgaccgcgaa tgacgggagc
     2641 agacgcgccg ccgccgtatt gcgaagcgtg gatgcccggt acgccgtcta aagcgtcgcc
     2701 caagttgacg gctttttggc gcaaggtatc gccggagatg attttgtcgg aggcggtcga
     2761 agtgtgcaac agccccgacg tggcgcgcgg acggcttttg ccgacgacgc tgaccgtttc
     2821 caaatccacc gattgctcag tttcatgcgc ttgggcgagg aggggtgtgt tgattaaaag
     2881 aattgataaa acaatgggtt tgagtgtagt ttgtgccatt ttggcttctc gtcgcatttc
     2941 aaaagtttgt tattatataa cattgcattc cttatatcat aagattttga gaacactcag
     3001 agggcatagg caaaagtttt tcaaatgaca cggttgtgat atttaatggc gttaatttgt
     3061 attaacccta attttaggga agttaatgat gtgaacacga acgccgctat atttggctat
     3121 cggataacca aaatttatga gtgcataaaa acggtacgtt cccgaacggt cgaaaaggtg
     3181 gcaaaatggc gtacttgtca gaacgcgagg ctctgcgcca ggttcacgag ggcgcatcgg
     3241 gcacgctaag atataagagg gtatggatgg gggtatcgga aatgcagtta ataacaaaca
     3301 aattataaat caataggtta atcacaaaat gcttttgttt atcgacaatt acgacagttt
     3361 tacttacaac atcgtccagt atttcactga attggggcag gaagttgccg tgcgccgcaa
     3421 cgatgatatt acgttggagg aaatcgaggc attgaatccg caatatctcg ttatcggccc
     3481 cggtccgtgt tcgcccaaag aagcggggat ttccgtggcg gcgatgcgcc atttcgccgg
     3541 ccggctgccg attatgggcg tgtgcctcgg gcatcagacg ataggcgagg cgttcggcgg
     3601 cagggtagtc cgcgccaaaa cgctgatgca cggtaaggtg tcgcccgtgt cccattcggg
     3661 caagggtatg tttaagggtt tgcccaatct ggttacctgt acgcgttatc acagcctcgt
     3721 tatcgatcgg aatacgatgc ccgaatgttt ggaagtaacg gcttggactg aggacggcga
     3781 gattatgggt gtgcgccata aggaatatgc cgtcgagggc gtgcagttcc accccgaagc
     3841 cctcttgacc gagcacggac atgatatgtt aaacaatttt ttaatcgaat ttcaaaactt
     3901 caaaccgcaa aaaatctgac gtgatgccgt ctgaagccct tcagacggca ttttcgtccg
     3961 aatattgaac ggaggacaaa aaatgattac accgcaacag gccatcgaac gattaatcag
     4021 caataacgag ttgttttacg atgaaatgac cgacttgatg cgtcagatta tgagaggaca
     4081 ggttctgccg gagcagatag cggccatttt gacaggattg cgtatcaagg ttgaaaccgt
     4141 ttccgaaatt accgcagctg cagccgtcat gcgcgagttt gcgacaaaag tgccgctgga
     4201 gaatgcagag gggctggtcg atatcgtcgg tacgggcggg gatggcgcga aaaccttcaa
     4261 tatttcgacg acttcgatgt ttgttgccgc agcggcaggc gcgaaggttg ccaaacacgg
     4321 aggccggtcg gtctcttcct ccagcggtgc ggctgacgtg gtggagcaga tgggcgcaaa
     4381 cctcaacctg actcccgaac aggttgccca aagtatcagg cagaccggca tcgggtttat
     4441 gttcgcgccc aatcaccaca gtgccatgcg ccatgtcgcc cctgtacgcc gttcgctcgg
     4501 tttccgaagt attttcaaca tattgggtcc gttaacgaat cctgcgggcg cgccgaacca
     4561 gcttttgggc gtgttccaca ccgatttgtg cggcattttg tcgcgggtct tgcaacaact
     4621 tggttcaaaa cacgttttgg ttgtttgcgg ggagggcggt ttggatgaaa ttacactgac
     4681 gggcaaaaca cgcgttgccg agctcaaaga cggaaaaatc agcgaatacg acatccgccc
     4741 agaagatttc ggtatcgaaa cccgccgcaa tttggatgaa atcaaagttg ccaatactca
     4801 ggaatctttg ttgaaaatga atgaggtgct ggaaggaaga gaaggggctg cgcgcgatat
     4861 cgtattgctc aacaccgccg ccgccctgta tgccggaaat gtcgctgctt cgctttcaga
     4921 cggcatatct gccgcacggg aagccatcga ttcaggcagg gccaaatcga aaaaagagga
     4981 gtttgtcggt tttcaaccac aacaaagatg ccattttctt ggaaagatgg agcttgggtg
     5041 atgccgccat gattatggaa cttttgtggc aaaacataag cacttcacga agagaactta
     5101 ccaaactgtt tttatataaa aacttggggc tgtactagat aaccagacca aattcccatt
     5161 aactaattgt cttaaaatct gaatttgaga ttctatttca aatgccattg gcatttcttt
     5221 aaatgcagcc ccaaatgctc tttgggaatg ccgttaaact tacgtaaatg gctaaattca
     5281 ctaatatcaa gcacatcata actacgaaag gtatccgtgt atacaatgcc atcaggctta
     5341 actttctttc ggataattgg caacaatgtc gctgattgcg cattaggaac aatgacggta
     5401 taa
//
LOCUS       DAWGNT010000132         5387 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.132, whole genome shotgun sequence.
ACCESSION   DAWGNT010000132 DAWGNT010000000
VERSION     DAWGNT010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5387
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.132"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            112..807
                     /gene="pgl"
                     /locus_tag="WHR98_001582"
     CDS             112..807
                     /gene="pgl"
                     /locus_tag="WHR98_001582"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HEZ2308243.1"
                     /translation="MFVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRS
                     PIAFFNALSQKDLDWKNVGITLADERIVPTVHADSNTGLVREYLLKNKAEAAMWIPMV
                     EDGKTETELHPDAVVDYALKHYKQPDVLVLGMGNDGHTASIFPKAPQFQTAIDGSAGV
                     ALVHTTPVTAPHERVSMTLDAIAHTGHVFLAIRGEEKKAVFDQAAQGENREYPINLVL
                     NHQGVNCHVFYAE"
     gene            788..1774
                     /locus_tag="WHR98_001583"
     CDS             788..1774
                     /locus_tag="WHR98_001583"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HEZ2308244.1"
                     /translation="MSSTPNKQAGYPRLVADIGGTNARFALETAPRVIEKAAVLPCKD
                     YDTVTDAVRAYLNQSGATAVRHAAFAIANPILGDWVQMTNHHWAFSIETTRQTLGLDT
                     LILLNDFTAQALAVTQTSSKDLMQVGGQKPVEFAPKAVIGPGTGLGVSGLVHSHAGWV
                     ALAGEGGHTSFPPFDDMEVLIWQYAKNKYGHVSAERFLSGAGLSLVYEALAAKQKAKP
                     AKLMPSEITEKALSGASPLCRQTLDIFCAMLGTVASNLALTLGARGGVYLCGGIIPRV
                     LEYFKTSPFRSRFENKGRFEAYLAAIPVYVVLSEFPGISGAAAALDNHLRNV"
     gene            1824..2672
                     /gene="hexR"
                     /locus_tag="WHR98_001584"
     CDS             1824..2672
                     /gene="hexR"
                     /locus_tag="WHR98_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HexR"
                     /protein_id="HEZ2308245.1"
                     /translation="MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEISERASV
                     SQPTVIRFCRSLGYKGLPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAA
                     ASLLGERRFLKESELENAIATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYV
                     DTHTQLMAASVLSDQDVLVAISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLA
                     DCVLSVATQENAELYTPMVSRLLQLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKH
                     IDYDKD"
     gene            2793..4439
                     /gene="pgi"
                     /locus_tag="WHR98_001585"
     CDS             2793..4439
                     /gene="pgi"
                     /locus_tag="WHR98_001585"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEZ2308246.1"
                     /translation="MKHFHDLPAWPKLWNHFDDSKTLHMREMFEQDPQRAERYWLQVG
                     GLTLDYSKNRINDETMSLLFELAREAGVPERMRQMFHGEKINTTENRAVLHVALRNRT
                     NSPIVVDGEDVMPKVNRVLQRMGEFAHEVRSGSWLGYTNQVITDVVNIGIGGSDLGPL
                     MMCTALKPFGHPRLNMHFVSNVDGSQLRDVLSKVHPETTLFIIASKTFTTQETLTNAL
                     TAREWFLNHAGDESAVAKHFVAVSTNQKAVAEFGIDTANMFEFWDWVGGRYSLWSAIG
                     LPIMLYLGEENFIEMLNGAHLMDQHFINTPLERNLPAILALIGIWYINYYGGGSHVIA
                     PYDQHLHRLPKFIQQLDMESNGKQVTLDGKAVGHETSPIIWGETGINGQHAFFQLLHQ
                     GTHITPIDLIASLEKRSNLPGHHEILLANVFAQAEAFMRGKTPDEVRAELKAQGMDEA
                     RIEELVPHKTFSGNRPTNLILMDKVNPRNMGSLIAMYEHKTFVQGIIWGINSFDQWGV
                     ELGKQLAKTILGELTGETGPQKHDSSTERLIRLYLQTNRK"
     gene            4453..5004
                     /locus_tag="WHR98_001586"
     CDS             4453..5004
                     /locus_tag="WHR98_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1311 domain-containing protein"
                     /protein_id="HEZ2308247.1"
                     /translation="MPSERRPFQTAFLSNRKTVGKLAERVQSRYDGLHKFKHICSAAM
                     ALIKEPLDKAKQRNEELEAAEEAAAQEALGREQEAARVSEWEERYKLSRSEFEQFWKG
                     LPQTVQNKLQASQKTWKSGMDKICANNAKAEGETPNGIKVSELACKTVETEARLEELY
                     NRKKALIDEMVREADKKELPKRL"
     gene            5049..5189
                     /locus_tag="WHR98_001587"
     CDS             5049..5189
                     /locus_tag="WHR98_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003698491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308248.1"
                     /translation="MPEYRNWQNGLNAKCADGDEYGVAQSDCRTREINAKTKEIQGYL
                     ID"
BASE COUNT         1361 a         1496 c         1422 g         1108 t
ORIGIN      
        1 aagcagtccc gatatttggt atcaaaagca taaacaactg ttcggccgac atattgctca
       61 acccgtttcc ataacggaat atgccgtctg aaataaaaaa aggacacaaa tatgtttgtt
      121 tggcacgaat acgaaaatgc ggcagaagcg gcgcagtctt tggctgacgc agtggcggat
      181 gctttgcagg gcgcactgga cgagaagggc ggtgcggtgt tggcagtttc cggcggacgt
      241 tcgccgattg catttttcaa cgccctgtcg caaaaagatt tggattggaa aaacgtcggc
      301 atcaccttgg cagatgaacg catcgtgccg accgtccacg ccgacagcaa taccggtttg
      361 gtgcgcgaat acctgttgaa gaacaaagcg gaagcggcaa tgtggattcc tatggtggaa
      421 gacggaaaaa ctgaaaccga attacatccc gatgctgttg tcgattatgc actgaaacat
      481 tacaaacagc ccgatgtttt ggttttgggt atgggaaacg acgggcatac ggcttcgatt
      541 ttcccgaaag ctccgcagtt tcagacggca atcgacggtt cggcaggtgt cgcgttggtg
      601 cataccacgc ccgttaccgc gccgcacgag cgcgtcagta tgaccttgga tgcgattgcc
      661 catacggggc atgtgttttt ggcgatacgg ggcgaagaga aaaaagccgt gttcgaccaa
      721 gccgcacaag gcgaaaaccg cgaatatccg atcaacctcg ttttgaacca tcaaggagtg
      781 aactgccatg tcttctacgc cgaataaaca agccggatat ccccgactgg tcgccgatat
      841 cggcgggacg aatgcacgct ttgcgctgga aaccgcgccg cgcgtcattg aaaaagccgc
      901 cgtgcttccg tgtaaagact acgatacggt taccgatgcg gtgcgtgcct atctgaatca
      961 aagcggtgca acagccgtac ggcacgcggc atttgccatc gccaacccga ttttgggcga
     1021 ctgggtgcag atgaccaacc accattgggc gttttccatc gaaaccaccc gtcagacttt
     1081 ggggctggac accctcatcc ttttgaacga ctttaccgcg caggcattgg cggtaacgca
     1141 gacttcaagc aaagacctga tgcaggtagg cgggcaaaag cctgtcgaat ttgcccccaa
     1201 agccgttatc ggccccggta ccggcctggg cgtgagcgga ttggtgcaca gccacgcagg
     1261 ctgggtggct ttggcgggcg agggcgggca taccagtttc ccgccgtttg acgatatgga
     1321 agtgctgatt tggcagtacg ccaaaaacaa atacggccat gtttccgccg aacgcttttt
     1381 gagcggcgcg ggcttgagct tggtttacga ggctttggct gcaaaacaga aagccaaacc
     1441 cgccaaactg atgccgtctg aaatcacgga aaaggctttg agcggcgcgt cgcctttgtg
     1501 ccgtcagact ttggacatct tctgcgccat gctcggcacg gttgcttcca acctcgccct
     1561 gacgctgggc gcgcgcggcg gcgtgtacct gtgcggcggc attattcccc gcgtgttgga
     1621 atatttcaaa acttccccgt tccgcagccg tttcgagaac aagggcaggt ttgaagcata
     1681 tcttgccgcg attcccgtgt atgtcgtctt gagcgagttc cccggaattt ccggtgcggc
     1741 tgcggctctc gacaaccatt tgagaaacgt ttaaccacag cggctccttg cagcggggct
     1801 gcattatcga agggcatatc attatgttaa gcaaaatcag cgaatcactg gcaaaccttt
     1861 ccggtgcgga acgcaaagtc gccgaatgtg cattggcgga acccaaatgg ttcgttcatg
     1921 ccgccgttgc cgaaatttcc gaacgtgcgt ccgtcagcca gccgaccgtc atccgattct
     1981 gccgcagctt gggttataaa gggctgcccg agttcaagct cgccttgtcc gccagcatcg
     2041 gtcatgaggg tatgccctat gtccacgaag aactcaatgc cgacgacgat atggcaagcg
     2101 tggtcgagaa agtgttgggc aatgccgccg cctcgctgtt gggcgaacgc cgcttcctga
     2161 aagagtcgga gctggaaaac gccattgcca cgctgatgca cgcccgtcgc gtcgagtttt
     2221 acggtgtcgg caattccggt atcgttgcgc aggacgcgca acacaagttt ttccgtttcg
     2281 gaatgtccac ggtcgcctat gtcgatacgc acacgcagct gatggcagca tccgttttga
     2341 gcgatcagga tgttttggtt gccatttcca acacgggttc gtctatcgaa cttttggatg
     2401 cggtcagcat cgccaaagaa aacggcgcgt ccgtcatcgc actgacccgc aacgattcgc
     2461 ctctggcgca acttgccgac tgcgtgttga gcgttgccac acaggaaaat gccgaactct
     2521 acacgcccat ggtttcccgc ctcttgcagc ttgccgtcat cgacattctc gccatcggac
     2581 ttgccctgcg cttgggcgat gctgccagcc tgcaattgca gaaaagcaaa aaaagcatac
     2641 acaacaagca catcgattac gacaaagatt gaccttcaga cggcatccca caaatgccgt
     2701 ctgaaatgcc gaacaacggc cgtcggcggc ttgcggcagt ttccggcagc cttttcatcc
     2761 cacaacaaaa aacctcattc aggagcatat agatgaaaca ctttcacgac ttacccgcat
     2821 ggccgaaatt gtggaaccac tttgacgaca gcaaaacatt gcatatgcgc gaaatgttcg
     2881 agcaagaccc gcagcgtgcg gaacgctact ggctgcaagt cggcggactg acgctggact
     2941 actccaaaaa ccgcatcaac gacgaaacca tgtcgctttt gttcgagttg gcgcgtgaag
     3001 caggcgtgcc ggagcggatg cggcagatgt tccacggcga aaaaatcaat acgacggaaa
     3061 accgcgccgt cctccacgtc gcccttcgca accgcaccaa ttcgccgatt gtggttgacg
     3121 gtgaagatgt gatgccaaaa gtcaaccgcg ttttgcaacg tatgggcgaa tttgcacacg
     3181 aagtccgcag tggaagctgg ctgggctata ccaaccaagt cattaccgac gttgtcaaca
     3241 tcggcatcgg cggatcggat ttgggcccgt tgatgatgtg taccgcgctc aaacctttcg
     3301 gtcatccacg cctcaatatg cacttcgtct ccaacgtgga cggctcgcaa ctgcgcgacg
     3361 tattgtccaa agtccacccc gaaaccacgc tgttcattat cgcctccaaa acctttacca
     3421 cgcaggaaac gctgaccaac gcgctgaccg cgcgcgaatg gtttttgaat catgcgggcg
     3481 atgaaagcgc cgtcgccaaa catttcgttg ctgtttccac caaccaaaaa gccgttgccg
     3541 aattcggcat cgacaccgcc aatatgtttg aattttggga ctgggtcggc ggccggtaca
     3601 gcctgtggtc cgccatcgga ttgccgatta tgctgtatct cggcgaagaa aacttcatcg
     3661 aaatgctcaa cggcgcgcac ctgatggacc aacatttcat caacactccg ctcgagcgca
     3721 acctgcccgc catcctcgcc cttatcggca tctggtacat caactactac ggcggcggaa
     3781 gccacgtcat cgcaccttac gaccaacacc tccaccgcct gcccaaattc atccagcagc
     3841 tcgatatgga aagcaacggc aaacaggtta cgttggacgg caaagcagtc ggacacgaaa
     3901 cctcgccgat tatttggggc gaaacgggca tcaacggcca gcacgccttc ttccaactgc
     3961 tgcaccaagg cacgcacatc acccccatcg acctcatcgc ctcgcttgaa aaacgcagca
     4021 acctgcccgg acaccacgaa atcctgcttg ccaacgtctt cgcccaagca gaagccttta
     4081 tgcgcggcaa aacccccgac gaagtccgcg ccgaactcaa agcgcagggt atggatgagg
     4141 cgcgtatcga agagctggtt ccgcacaaaa ccttctccgg caaccgcccg accaacctca
     4201 tcctgatgga taaggtcaac ccccgcaata tgggcagcct gattgccatg tacgaacaca
     4261 aaaccttcgt acaaggcatc atttggggca tcaacagctt cgaccagtgg ggcgtggaac
     4321 tcggcaaaca actggctaaa accattttgg gcgaactgac cggcgaaacc gggccgcaaa
     4381 agcacgacag ttcgaccgaa cgcctgatca ggctttacct gcaaaccaac cgcaaataaa
     4441 acctgcggaa aaatgccgtc tgaacgccga ccgtttcaaa cggcattttt atcgaacagg
     4501 aaaaccgtcg gtaaacttgc agagcgtgtg caatcccgat atgatggttt gcataaattt
     4561 aaacatatat gttccgcagc tatggcactg attaaagagc cgttggacaa agcgaaacaa
     4621 aggaacgaag aacttgaagc ggcagaagaa gcggcggcgc aggaggcatt gggtcgggag
     4681 caggaagccg cccgcgtatc cgaatgggaa gaacgctaca agttgtcgcg cagcgagttc
     4741 gagcagttct ggaaaggatt gccgcaaact gtacagaata aactgcaagc ttcgcagaaa
     4801 acatggaaaa gcggtatgga caaaatctgt gccaacaatg cgaaagccga aggtgaaacg
     4861 ccaaacggca taaaagtcag cgaactggca tgcaaaacgg tggaaaccga agcacgcttg
     4921 gaagagctgt acaaccgtaa aaaagccctt atcgacgaaa tggtcaggga agcggacaag
     4981 aaagaactgc caaagcggct ctgaacagcg cggttcaggc actgcccgcc gatattgccg
     5041 aaaccgtcat gcccgagtac cgcaactggc aaaacggtct gaatgccaaa tgcgctgacg
     5101 gcgacgaata cggcgtggca caatctgact gccgtaccag agaaatcaat gcgaaaacca
     5161 aagaaatcca aggttatctg attgactgaa acttggatgc gggaatgtcg gcggcttttg
     5221 cgtttttgtc gtttttatag tgaattaaat ttaaaccgat acatcgttgg ctcgccttag
     5281 ctcaaagaga acgattctct aaggtgctga agcaccaagt gaatcggtcc gtactatttg
     5341 tactgtctgc ggcttcgccg ccttgtcctg atttttgtta atccact
//
LOCUS       DAWGNT010000133         5328 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.133, whole genome shotgun sequence.
ACCESSION   DAWGNT010000133 DAWGNT010000000
VERSION     DAWGNT010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5328
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.133"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            205..2343
                     /locus_tag="WHR98_001588"
     CDS             205..2343
                     /locus_tag="WHR98_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HEZ2308249.1"
                     /translation="MNNPLVNQAAMVLPVFLLSACLGGGGSFDLDSVDTEAPRPAPKY
                     QDVSSEKPQAQKDQGGYGFAMRLKRRNWHTQANPKEDEIKLSENDWEATGLPGNPKNL
                     PERQKSVIEKVETDDGSNIYSSPYLTQSNHPNGNTGNGTNLPKNEVTDYKDFKYVYSG
                     WFYKHAKRNFDITNKIVRQGDDGYIFYHGKEPSRQLPVSEKITYKGVWHFVTDTKNGQ
                     KFYDIIQHSKKQGDRYSGFSGDDDEQYSNKNDMLKGDQEGYGFTSNLEVDFNNKKLTG
                     KLIRNNRVTGATNDKYTTQYYSLEAQVTGNRFNGTATATDKPEQDGTKEHPFVSDSSS
                     LSGGFFGPQGEELGFRFLSDDKKVAVVGSAKTKDKDANGNTEAASGGTGAAASGGAAA
                     MPSENGKLTTVLDAVELKSGDKEVKNLDNFSNAAQLVVDGIMIPLLPKNSESESNQAD
                     KGKNGGTAFTYTTTYTPESDKKDTQAGTPTNGAQTASNTAGDANGKTKTYEVEVCCSN
                     LNYLKYGLLTRKTAGNTGEGGNGSPTAAQTAQGAQSMFLQGERTDENKIPSEQNVVYR
                     GSWYGHIANGTSWSGNASNATSGNRADFTVNFGEKKITGTLTAENRQAATFTIEGDIE
                     GNGFSGTAKTADSGFDLDQSNNTRTPKAYITDAKVQGGFYGPKAEELGGWFAYPSDKQ
                     TKNAPDASGNGNSASSATVVFGAKRQQPVQ"
     gene            2430..5183
                     /gene="tbpA"
                     /locus_tag="WHR98_001589"
     CDS             2430..5183
                     /gene="tbpA"
                     /locus_tag="WHR98_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein TbpA"
                     /protein_id="HEZ2308250.1"
                     /translation="MQQQHLFRFNILCLSLMTALPAYAENVQAGQAQEKQLDTIQVKA
                     KKQKTRRDNEVTGLGKLVKTADTLSKEQVLDIRDLTRYDPGIAVVEQGRGASSGYSIR
                     GMDKNRVSLTVDGLAQIQSYTAQAALGGTRTAGSSGAINEIEYENVKAVEISKGSNSV
                     EQGSGALAGSVAFQTKTADDVIGEGRQWGIQSKTAYSGKNRGLTQSIALAGRIGGAEA
                     LLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDDNQYAHFVVEEECESGSYEKCKSKP
                     KKDVVGKDERQTVSTRDYTGPNRFLADPLSYESRSWLFRPGFRFENKRHYIGGILEHT
                     QQTFDTRDMTVPAFLTKAVFDANKKQAGSLPGNGKYAGDHKYGGLFTNGENGALVGAE
                     YGTGVFYDETHTKSRYGLEYVYTNADKDTWADYARLSYDRQGIGLDNHFQQTHCSADG
                     SDKYCRPSADKPFSYYKSDRVIYGESHRLLQAAFKKSFDTAKIRHNLSVNLGFDRFGS
                     NLRHQDYYYQNAKRAYSLKTPPKNGNGGSNPNPNGDKDKPYWVSIGGGNVVTGQICLF
                     GNNTYTDCTPRSINGKSYYAAVRDNVRLGRWADVGAGLRYDYRSTHSDDGSVSTGTHR
                     TLSWNAGIVLKPADWLDLTYRTSTGFRLPSFAEMYGWRAGVQSKAVKIDPEKSFNKEA
                     GIVFKGDFGNLEASWFNNAYRDLIVRGYEAQIQNGKETAKGDPAYLNAQSARITGINV
                     LGKIDWNGVWDKLPEGWYSTFAYNRVHVRDIKKRADRTDIQSHLFDAIQPSRYVVGLG
                     YDQPEGKWGVNGMLTYSKAKEITELLGSRALLNGNSRNTKATARRTRPWYIVDVSGYY
                     TIKKHFTLRAGVYNLLNYRYVTWENVRQTAGGAVNQHKNVGVYNRYAAPGRNYTFSLE
                     MKF"
BASE COUNT         1528 a         1339 c         1359 g         1102 t
ORIGIN      
        1 ccggattccc actttcgtgg gaatgacggg atatacgtgg gaatgacggg atataggttt
       61 ccgtgcggac gcgttcggat tcacgactgc gcgggaatga cgggattttg gtgtattccc
      121 taaaaaaata aaaaagtatt tgcaaatttg ttaaaaataa ataaaataat aatccttatc
      181 attctttaat tgaattgggt ttatatgaac aatccattgg taaatcaggc tgctatggtg
      241 ctgcctgtgt ttttgttgag tgcttgtttg ggcggaggcg gcagtttcga tcttgattct
      301 gtcgataccg aagccccgcg tcccgcgcca aagtatcaag atgtttcttc cgaaaaaccg
      361 caagcccaaa aagaccaagg cggatacggt tttgcaatgc gcctcaagcg gcggaattgg
      421 catacgcagg caaatcctaa agaagatgag ataaaacttt ctgaaaatga ttgggaggcg
      481 acaggattgc cgggcaatcc caaaaactta cctgagcgac agaaatcggt tattgaaaaa
      541 gtagaaacag acgacggcag caatatttat tcttccccct atctcacgca atcaaaccat
      601 ccaaacggca acactggcaa cggtacaaac ctgccaaaaa acgaagtaac agattataaa
      661 gatttcaaat atgtttattc cggctggttt tataaacatg ctaaacgaaa ttttgatatt
      721 acaaataaaa ttgtacgaca aggcgacgac ggttatatct tctatcacgg caaagaacct
      781 tcccgacaac ttcccgtttc tgaaaaaatt acctataaag gtgtgtggca ttttgtaacc
      841 gatacgaaaa atggacaaaa attttatgac attatccagc attcaaaaaa acaaggcgac
      901 aggtatagcg gattttctgg cgatgatgat gaacaatatt ctaataaaaa cgacatgctg
      961 aaaggtgatc aagagggtta tggttttacc tcaaatttag aagtggattt caataataaa
     1021 aaattgacgg gtaaattgat acgcaataat agagttacag gcgctactaa cgataaatac
     1081 accacgcaat attatagcct tgaggctcaa gtaacaggca accgcttcaa cggcacggca
     1141 acggcaactg acaaacctga acaagacgga accaaggaac atccctttgt ttccgactcg
     1201 tcttctttga gcggcggctt tttcggcccg cagggtgagg aattgggttt ccgctttttg
     1261 agcgacgata aaaaagttgc cgttgtcggc agcgcgaaaa ccaaagacaa agacgcaaat
     1321 ggcaatactg aggcggcttc aggcggcaca ggtgcggcag catcgggcgg tgcggcagct
     1381 atgccgtctg aaaacggtaa gctgaccacg gttttggatg cggttgagct gaaatcgggc
     1441 gataaggaag tcaaaaatct cgacaacttc agcaatgccg cccaactggt tgtcgacggc
     1501 attatgattc cgctcctgcc caagaattcc gaaagcgaga gcaatcaggc agataaaggt
     1561 aaaaacggcg gaacagcctt tacctacaca acaacctaca cgccggaaag tgataaaaaa
     1621 gacacccaag caggtacgcc gacgaatggg gcgcaaaccg cttcaaatac ggcaggtgat
     1681 gccaatggca aaacaaaaac ctatgaagtc gaagtctgct gttccaacct caattatctg
     1741 aaatacgggt tgctgacgcg caagactgcc ggcaatacgg gggaaggcgg caacggcagc
     1801 ccaaccgccg cccaaacggc acagggtgca caaagtatgt tcctccaagg cgagcgcacc
     1861 gatgaaaaca agattccaag cgagcaaaac gtcgtttatc gggggtcttg gtacgggcat
     1921 attgccaacg gcacaagctg gagcggcaat gcttccaatg caacgagtgg caacagggcg
     1981 gactttaccg tgaattttgg cgagaaaaaa attaccggca cgttaaccgc tgaaaacagg
     2041 caggcggcaa cctttaccat tgagggcgat attgagggca acggtttttc cggtacggcg
     2101 aaaactgctg actcaggttt tgatctcgat caaagcaata acacccgcac gcctaaggca
     2161 tatatcacag atgccaaggt gcagggcggt ttttacgggc ccaaagccga agagttgggc
     2221 ggatggtttg cctatccgag cgataaacaa acgaaaaatg caccagatgc atccggcaat
     2281 ggaaattcag caagcagtgc aactgtcgta ttcggtgcga aacgccaaca gcctgtgcaa
     2341 taagcacggt tgccgaacaa tcaagaataa ggcttcagac ggcatcgctc cttccgatgc
     2401 cgtctgaaag cgaagattag ggaaacatta tgcaacagca acatttgttc cgattcaata
     2461 ttttatgcct gtcgctgatg actgcgctgc ctgcttatgc agaaaatgtg caagccggac
     2521 aagcacagga aaaacagttg gataccatac aggtaaaagc caaaaaacag aaaacccgcc
     2581 gcgataacga agtaaccggt ctgggcaaat tggtcaaaac cgccgacacc ctcagcaagg
     2641 aacaggtact cgatatccgc gacctgacgc gttacgaccc cggcatcgcc gtcgtcgaac
     2701 aggggcgcgg cgcaagctct ggctactcga tacgcggtat ggacaaaaac cgcgtttcct
     2761 tgacggtgga cggcttggcg caaatacagt cctacaccgc gcaggcggca ttgggtggga
     2821 cgaggacggc gggcagcagc ggcgcaatca atgaaatcga gtatgaaaac gtcaaagctg
     2881 tcgaaatcag caaaggctca aactcggtcg aacaaggcag cggcgcattg gcgggttcgg
     2941 tcgcatttca aaccaaaacc gccgacgatg ttatcgggga aggcaggcag tggggcattc
     3001 agagtaaaac cgcctattcc ggcaaaaacc gggggcttac ccaatccatc gcgctggcgg
     3061 ggcgcatcgg cggtgcggag gctttgctga tccacacggg tcggcgcgcg ggggaaatcc
     3121 gcgcccacga agatgcagga cgcggcgttc agagctttaa caggctggtg ccggttgagg
     3181 acgacaacca atacgctcat ttcgtggtcg aagaagaatg cgaaagcggg agttatgaaa
     3241 agtgtaaaag caaaccgaaa aaagatgttg tcggcaaaga cgaacgtcaa acggtttcta
     3301 cccgagacta cacgggccca aaccgcttcc tcgccgatcc gctttcatac gaaagccgat
     3361 cgtggctgtt ccgcccgggt tttcgttttg aaaacaaacg gcactacatc ggcggcatac
     3421 tcgaacacac gcaacaaact ttcgacacgc gcgatatgac ggttccggca ttcctgacca
     3481 aggcggtttt tgatgcaaat aaaaaacagg cgggttcttt gcccggcaac ggcaaatacg
     3541 cgggcgacca caaatacggc ggtctgttta ccaacggcga aaacggtgcg ctggtgggcg
     3601 cggaatacgg tacgggcgtg ttttacgacg agacgcacac caaaagccgc tacggtttgg
     3661 aatatgtcta taccaatgcc gataaagaca cttgggcgga ttatgcccgc ctctcttacg
     3721 accggcaggg catcggtttg gacaaccatt ttcagcagac gcactgttct gccgacggtt
     3781 cggacaaata ttgccgtccg agtgccgaca agccgttttc ctactacaaa tccgatcgcg
     3841 tgatttacgg ggaaagccac aggctcttgc aggcggcatt caaaaaatcc ttcgataccg
     3901 ccaaaatccg ccacaacctg agcgtgaatc tcgggtttga ccgctttggc tctaatctcc
     3961 gccatcagga ttattattat caaaatgcca aacgcgccta ttcgttgaaa acgcccccta
     4021 aaaacggcaa cggcggctca aaccccaacc ccaacggcga caaggacaaa ccctattggg
     4081 tcagcatagg cgggggaaat gtggttacgg ggcaaatctg cctctttggc aacaatactt
     4141 atacggactg cacgccgcgc agcatcaacg gcaaaagcta ttacgcggca gttcgggaca
     4201 atgtccgttt gggcaggtgg gcggatgtcg gcgcgggctt gcgctacgac taccgcagca
     4261 cgcattcgga cgacggcagc gtttccaccg gcacgcaccg caccctgtcc tggaacgcag
     4321 gcatcgtcct caaacctgcc gactggctgg atttgactta ccgcacttca accggcttcc
     4381 gcctgccctc gtttgcggaa atgtacggct ggcgggcggg tgttcaaagc aaggcggtca
     4441 aaatcgatcc ggaaaaatcg ttcaacaaag aagccggcat cgtgtttaaa ggcgatttcg
     4501 gcaacttgga ggcaagttgg ttcaacaatg cctaccgcga tttgattgtc cggggttatg
     4561 aagcgcaaat tcaaaacggc aaagaaacag ccaaaggcga cccggcttac ctcaatgccc
     4621 aaagcgcgcg gattaccggc atcaatgttt tgggcaaaat cgattggaac ggcgtatggg
     4681 ataaattgcc cgaaggttgg tattctacat ttgcctataa tcgtgtccat gtccgcgaca
     4741 tcaaaaaacg cgcagaccgc accgatattc aatcacacct gtttgatgcc atccaaccct
     4801 cgcgctatgt cgtcggcttg ggctatgacc aaccggaagg caaatggggt gtgaacggta
     4861 tgctgactta ttccaaagcc aaggaaatca cagagttgtt gggcagccgt gctttgctca
     4921 acggcaacag ccgcaataca aaagccaccg cgcgccgtac ccgcccttgg tatattgtgg
     4981 atgtgtccgg ttattacacg attaaaaaac acttcaccct ccgtgcgggc gtgtacaacc
     5041 tcctcaacta ccgctatgtt acttgggaaa atgtgcggca aactgccggc ggcgcagtca
     5101 accaacacaa aaatgtcggc gtttacaacc gatatgccgc ccccggtcgc aactacacat
     5161 ttagcttgga aatgaagttt taaacgtcca aacgccgcaa atgccgtctg aaaggcttca
     5221 gacggcattt tttacacaat tcccgccatt ttccatcatt cccaacaaca ccgtaatcct
     5281 gaaatccgtc attcccacgc aggcgggaat ccagtccgtt cggtttag
//
LOCUS       DAWGNT010000134         5302 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.134, whole genome shotgun sequence.
ACCESSION   DAWGNT010000134 DAWGNT010000000
VERSION     DAWGNT010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5302
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.134"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(99..2933)
                     /gene="lbpA"
                     /locus_tag="WHR98_001590"
                     /gene_synonym="tbpA"
     CDS             complement(99..2933)
                     /gene="lbpA"
                     /locus_tag="WHR98_001590"
                     /gene_synonym="tbpA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin-binding protein LbpA"
                     /protein_id="HEZ2308251.1"
                     /translation="MNKKHGFQLTLTALAVAAAFPSYAANPETAAPDAAQTQSLKEVT
                     VRAAKVGRRSKEATGLGKIVKTSETLNKEQVLGIRDLTRYDPGVAVVEQGNGASGGYS
                     IRGVDKNRVAVSVDGVAQIQAFTVQGSLSGYGGRGGSGAINEIEYENISTVEIDKGAG
                     SSDHGSGALGGAVAFRTKEAADLISDGKSWGIQAKTAYGSKNRQFMKSLGAGFSKDGW
                     EGLLIRTERQGRETRPHGDIADGVAYGINRLDAFRQTYDIQSKDKPGQFFSVEGERES
                     KPLAKLAGYGKYLNNQLNRWVKERVEQNKPLSAEEEAMVREAQARHENLSAQAYTGGG
                     RILPDPMDYRSGSWLAKLGYRFGGRHYVGGVFEDTKQRYDIRDMTEKQYYGTDEAEKF
                     RDKSGVYDGDDFRDGLYFVPNIEEWKGDTNLVKGIGLKYSRTKFIDEHHRRRRMGLLY
                     RYENEAYSDNWADKAVLSFDKQGVATDNNTLKLNCAVYPAVDKSCRASADKPYSYDSS
                     DRFHYREQHNVLNASFEKSLKNKWTKHHLTLGFGYDASKAISRPEQLSHNAARISEST
                     GFDDNNQDKYRLGKPEVVEGSVCGYIETLRSRKCVPRKINGSNIHISLNDRFSIGKYF
                     DFSLGGRYDRKNFTTSEELVRSGRYVDRSWNSGIVFKPNRHFSVSYRASSGFRTPSFQ
                     ELFGIDIYHDYPKGWQRPALKSEKAANREIGLQWKGDFGFLEISSFRNRYTDMIAVAD
                     HKTKLPNQAGQLTEIDIRDYYNAQNMSLQGVNILGKIDWNGVYGKLPEGLYTTLAYNR
                     IKPKSVSNRPGLSLRSYALDAVQPSRYVLGFGYDQPEGKWGANIMLTYSKGKNPDELA
                     YLAGDQKRYSTKRASSSWSTADVSAYLNLKKRLTLRAAIYNIGNYRYVTWESLRQTAE
                     STANRHGGDSNYGRYAAPGRNFSLALEMKF"
     gene            complement(2930..5143)
                     /locus_tag="WHR98_001591"
     CDS             complement(2930..5143)
                     /locus_tag="WHR98_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HEZ2308252.1"
                     /translation="MCKPNYGGIVLLPLLLASCIGGNFGVQPVVESTPTAYPVTFKSK
                     DVPTSPPAGSSVETTPVNRPAVGAAMRLPRRNTAFHREDGTVIPDSKQAEEKLSFKEE
                     DILFLYGSKKDQRQQLKDKIRQPNSTASIITSEKKNARYSYKFVDAGYVYVRGEDEIK
                     WTSDYKQFSNRLGYDGFVYYSGERPSQSLPSAGTVEYSGNWQYMTDAKRHRAGKAVGI
                     DNLGYITFYGNDIGATSYAAKDVDEREEHPAEYTVDFDKKILKGELIKNQYVQKRNDR
                     KEPKKPLTIYNITAKLDGNRFTGSAKVNTELKTSHADKEHLFFHTDADQRLEGGFFGD
                     NGEELAGRFISNDKSVFGVFAGKQKTETENAADTKPALSSGKHTKILDSLKISVDEAS
                     DKNPREFAISPMPDFGHPDKLLVEGREIPLVNQEQTIDLADGRKMTVSACCDFLTYVK
                     LGRIKTERPAAKPKAQDEEDSDIDNGEESEDEIGDEEEGTEDAAAGDEGSEEDEATEN
                     EDGEEDEAEEPEEESSAEGNGSSNAILPVPEASKGRDIDLFLKGIRTAETNIPQTGEA
                     RYTGTWEARIGKPIQWDNQADKEAAKAEFTVDFGKKSISGTLTEKNGVKPAFHIENGK
                     IEGNGFHATARTRENGIDLSGQGSTRSQSFKADNLLVTGGFYGPKAEELGGTIFNNDG
                     KSLSITENIENKVEAEVEAEVEVEADVGKQLEPDEVKHKFGVVFGAKKDMQEVEK"
BASE COUNT         1128 a         1419 c         1237 g         1518 t
ORIGIN      
        1 attttgttta tatcgaatca aaaaaacctg caccttaatc agttggcggt ttagtccgac
       61 ttttggggtg cagatcaagc tttcagacgg tatttccttt aaaacttcat ttcaagcgcg
      121 aggctgaagt tcctgcccgg tgcggcatac cttccatagt tgctgtcgcc gccgtgccgg
      181 tttgccgtgc tttccgcagt ctggcgcaag gattcccaag taacgtagcg gtagttgccg
      241 atattgtaga tagccgccct caaggtcagc cgttttttca gattcagata ggcggaaacg
      301 tctgccgtcg accaagaaga cgacgctctt tttgtcgaat atcgtttttg atcgcctgcc
      361 agataagcaa gctcgtcagg gtttttccct ttggaatagg tcagcataat gtttgcgccc
      421 catttcccct ctggctggtc gtatccgaac cccaaaacat aacgcgacgg ctgtaccgca
      481 tccaaagcat agctgcggag ggacagtccc ggccggttgg ataccgattt cggtttgata
      541 cggttgtacg ccaatgtggt gtacaaacct tcgggcagtt tgccgtacac accgttccag
      601 tcgatttttc ccaatatatt aacgccttgg agcgacatat tttgggcatt gtaataatcg
      661 cgtatatcaa tctctgtcaa ttgtcctgcc tgattcggca atttggtttt gtgatcggca
      721 acggcaatca tatcggtata gcggttgcgg aagctgctga tttccaaaaa gccgaaatcg
      781 cccttccact gcaaaccgat ttcgcggttg gctgcctttt ccgatttcag ggcgggacgc
      841 tgccagcctt tcggataatc gtgataaatg tctatcccga aaagttcttg gaatgagggc
      901 gttctgaagc cgctggaggc gcggtaagac acggaaaaat gccggttcgg tttgaacacg
      961 atgccgctgt tccacgaacg gtcaacatac cgtccgctgc ggacgagttc ttccgacgtg
     1021 gtgaagtttt tccggtcata cctgccgccc aagctgaaat cgaaatattt gccgattgaa
     1081 aaacggtcgt tcaaagaaat atggatattg ctgccgttga tttttcttgg cacgcatttg
     1141 cgggaacgca gggtttcgat gtagccgcag accgaccctt cgacgacttc gggcttaccc
     1201 aaacggtact tatcttgatt gttatcatcg aatcccgtgg attccgaaat ccttgccgca
     1261 ttgtgggaaa gctgttcggg gcgggagatc gctttggaag catcgtaacc gaagcccaaa
     1321 gtcagatggt gtttcgtcca tttgtttttc agcgatttct caaacgaggc attcaaaaca
     1381 ttgtgctgtt cgcggtagtg gaaacggtcg ctgctgtcgt aggaatacgg tttgtccgcc
     1441 gacgcgcggc aggatttgtc cacagcagga tacacggcgc aattcagctt cagcgtgttg
     1501 ttgtcggttg ccacgccctg tttgtcaaac gacaacaccg ccttgtccgc ccaattgtca
     1561 gaatacgctt cgttttcata acggtacagc aaacccatac ggcggcggcg gtgatgttcg
     1621 tcaataaatt tggtgcggga atatttcaaa cctatgccct tgaccaaatt tgtatcgccc
     1681 ttccactctt ctatattcgg cacaaaatac aagccgtcgc ggaaatcgtc gccgtcgtac
     1741 accccgctct tgtctctaaa cttttccgcc tcgtccgtac cgtaatactg tttttccgtc
     1801 atatcgcgga tgtcgtaacg ctgtttggta tcctcaaaca caccgccgac ataatgcctg
     1861 ccgccgaagc ggtagcccag cttggcaagc cacgaaccgc tgcggtaatc catcggatcg
     1921 ggcaatatcc tgccgccgcc cgtgtaagct tgggcggaca ggttttcgtg gcgcgcctgc
     1981 gcctcccgca ccatcgcctc ttcttcagca cttaaaggct tattttgttc aacacgttct
     2041 tttacccagc ggttgagctg gttgttcaaa tatttcccgt agcccgccaa ttttgccaag
     2101 ggcttggatt cacgctcgcc ctctactgag aaaaattgcc ctggtttatc tttgctttga
     2161 atatcgtatg tctggcggaa cgcgtccaaa cggtttatgc cgtatgccac cccgtccgca
     2221 atatcgccgt gcgggcgcgt ttcccgcccc tgacgttcgg tacggattag cagcccttcc
     2281 caaccgtctt tactgaaccc cgcgccgagc gacttcataa attggcggtt tttactgccg
     2341 taggcggttt ttgcctgtat cccccagctt ttgccgtctg aaatcaggtc tgccgcctct
     2401 ttggttcgga aggcgaccgc gccgccgagt gcgccgctgc cgtgatcgga cgaaccggca
     2461 cctttatcga tttccaccgt gctgatgttt tcatattcga tttcgttgat tgcaccgctg
     2521 ccgccgcgtc cgccgtatcc gctcaacgat ccctgcacgg taaacgcctg tatttgggca
     2581 acgccgtcaa ccgaaaccgc cacacggttt ttatccacgc cgcgtatcga gtagccgccg
     2641 ctcgcgccgt tgccctgttc gacaaccgcc acgcccggat cgtagcgcgt caggtcgcgg
     2701 ataccgagta cctgttcttt gttcaacgtt tccgacgttt tgacgatttt gcccaaaccg
     2761 gtcgcctctt tcgatcgccg tcccactttg gcggcacgga cggtaacctc tttcagggat
     2821 tgggtctgcg ccgcatcagg tgccgccgtt tcagggtttg ccgcatatga cgggaaggcg
     2881 gcggcaacag ccaaggcagt cagggtaagc tgaaaaccgt gtttcttatt catttttcca
     2941 cctcctgcat atctttcttc gcaccgaata ccacgccgaa tttgtgttta acttcatcag
     3001 gttctaactg tttgccaaca tcagcttcaa cttcaacttc agcttcaact tcagcttcaa
     3061 ctttattttc aatattttca gttatactaa gagatttccc atcattattg aaaatagtac
     3121 cgcccaattc ctccgccttc gggccgtaaa agccgcccgt tacaagaaga ttgtcggctt
     3181 tgaagctctg cgatctggtc gaaccctgcc cggaaaggtc gatgccgttc tcccgagtgc
     3241 gcgctgtcgc gtggaaaccg ttgccctcaa tcttgccgtt ttcaatatgg aaagcaggtt
     3301 ttacaccgtt tttctccgtc agcgttccgg aaatcgattt cttgccgaaa tcaacggtaa
     3361 attctgcttt tgccgcttct ttatccgcct gattgtccca ttgaatgggt ttgccgatac
     3421 gcgcttccca agtgccggta tagcgtgctt ctccagtttg cggaatattc gtttctgccg
     3481 tgcggatacc tttcaggaaa aggtcgatgt ccctgccttt agaggcttcc gggacaggca
     3541 ggatggcgtt tgaactgccg ttgccttctg ccgacgattc ttcttcaggt tcttcagctt
     3601 cgtcttcttc gccgtcttcg ttttctgtgg cttcgtcttc ttcgctgcct tcatctcctg
     3661 cggctgcatc ttcggtgcct tcttcttcat cgccgatttc gtcttcgctt tcttcgccat
     3721 tatcaatgtc cgaatcctct tcgtcctgcg ccttcggttt ggcggcgggg cgttcggttt
     3781 ttatccgtcc gagtttcaca taggtcaaaa agtcgcaaca agcactgacg gtcattttcc
     3841 tgccgtcggc aagatcgatg gtttgttctt ggtttaccaa aggaatttca cgcccttcga
     3901 caagaagttt gtcgggatga ccaaaatcgg gcatagggga aatggcaaac tcacggggat
     3961 ttttatcact tgcctcgtca acggaaattt tcagagaatc caagattttg gtgtgttttc
     4021 cagacgacag ggcaggtttt gtatctgctg cgttttctgt ctctgttttt tgtttgcctg
     4081 cgaatacgcc gaatacgctt ttgtcgttgc tgataaaccg tccggcaagc tcttctccgt
     4141 tatcgccgaa aaaaccgccc tcaagccgct gatcggcatc ggtatggaaa aacaaatgct
     4201 ctttatcagc gtggctcgtc ttcaactcgg tgttaacttt ggcactgccg gtaaagcggt
     4261 tgccgtccaa ttttgcagta atgttgtaaa tggtcagcgg ttttttaggt tcctttcgat
     4321 catttctctt ttgcacatac tgatttttaa tcagctcgcc ctttaggatt tttttgtcga
     4381 aatcaaccgt atattcggca ggatgctctt ccctttcgtc gacatcctta gccgcataag
     4441 aagttgcacc aatatcgtta ccataaaatg tgatataacc caaattgtca atgccaaccg
     4501 ccttacctgc tcgatgacgt ttggcatcgg tcatatattg ccagttacca gaatattcca
     4561 ccgttcccgc actcggtaaa gattgggaag gacgttctcc ggaataatat acaaaaccgt
     4621 cataacctaa gcggttggaa aactgcttgt aatctgaagt ccacttaatt tcatcttccc
     4681 cccttacata tacataacct gcatctacaa atttataact atatcttgca tttttctttt
     4741 ccgatgtgat aatgcttgcc gtagaatttg gttgacgaat tttatcttta agctgctgac
     4801 gttgatcttt tttggaaccg tataaaaaca ggatatcttc ctctttaaac gacagctttt
     4861 cttctgcttg tttgctatcg ggaattaccg tgccatcttc acgatgaaaa gcagtattcc
     4921 gccttggcag ccgcattgcc gcaccgacgg cgggccggtt gaccggcgtg gtttctaccg
     4981 aagacccggc agggggcgaa gtgggaacgt ccttagactt gaaagtgacg gggtacgcgg
     5041 tcggcgttga ttcgacaaca ggctgcacgc cgaaattgcc gccgatgcaa gatgccaaaa
     5101 gtaagggcaa caagacaatg ccgccataat tcggtttaca catccctact tttcctccta
     5161 tttgattaat aataattatc attatattaa tatgtacaga taatatcaac ccgtttttat
     5221 agtgaattaa caaaaatccg gacaaggcga cgagccgcag acagtacaga tacatcccgt
     5281 cattcccacg aaagtgggaa tc
//
LOCUS       DAWGNT010000135         5272 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.135, whole genome shotgun sequence.
ACCESSION   DAWGNT010000135 DAWGNT010000000
VERSION     DAWGNT010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5272
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.135"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(125..337)
                     /locus_tag="WHR98_001592"
     CDS             complement(125..337)
                     /locus_tag="WHR98_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEZ2308253.1"
                     /translation="MELGYTPYNLRTLRNRCKLTQAELAQIVGVKHYIQVGRWEAEPD
                     TETRRADMPLEKWRQFLDWTEKTNAV"
     gene            complement(349..630)
                     /locus_tag="WHR98_001593"
     CDS             complement(349..630)
                     /locus_tag="WHR98_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308254.1"
                     /translation="MNRAALFNRYPEWIIGQDGASRFITHCRYPRLIAKIHRQTDGEC
                     PGGHYRHSENGITLYDFIFFDGKPADEARFAAVLTETCRRAVKKICETK"
     gene            complement(668..871)
                     /locus_tag="WHR98_001594"
     CDS             complement(668..871)
                     /locus_tag="WHR98_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308255.1"
                     /translation="MNIIEQEMKHSSLRKVDVEIAKIIADAHKINAESVKIAQESRWY
                     PMMAATGLVTAIAAVLALIFKFA"
     gene            complement(951..1523)
                     /locus_tag="WHR98_001595"
     CDS             complement(951..1523)
                     /locus_tag="WHR98_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEZ2308256.1"
                     /translation="MGKPGKSSRPSALLSARWQDIDLTARLWHIPAADMKTKHPFTVP
                     LSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTP
                     GKSKHTMHGFRHLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYR
                     LQERRELAEWYSRRHRQAYEAAAQNTCNKT"
     gene            1502..1813
                     /locus_tag="WHR98_001596"
     CDS             1502..1813
                     /locus_tag="WHR98_001596"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308257.1"
                     /translation="MTSPVSPSIRAASIFPLARSISTACRTDINRLPLRLIASTKTAE
                     INLASSVLSSVLPASLRRLRVGLMLTASSLRYSVARLMPNSCACCLRYAERAPRPIAS
                     A"
     gene            complement(1835..2092)
                     /locus_tag="WHR98_001597"
                     /pseudo
     CDS             complement(1835..2092)
                     /locus_tag="WHR98_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237890.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2094..2423
                     /locus_tag="WHR98_001598"
                     /pseudo
     CDS             2094..2423
                     /locus_tag="WHR98_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222574.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2416..2610
                     /locus_tag="WHR98_001599"
     CDS             2416..2610
                     /locus_tag="WHR98_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEZ2308258.1"
                     /translation="MNNYYLYRNCSSDVLWVKRIQRQIDGSLLLISDNSTYPPMPLAL
                     AEHPDIQIIGQVVQVSKDLN"
     gene            2634..3194
                     /locus_tag="WHR98_001600"
     CDS             2634..3194
                     /locus_tag="WHR98_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308259.1"
                     /translation="MKILALLIAATCALSACGGQAEEQPASAQPQEQAQSELKTMPVS
                     YTDYQSVANKGLADQKTGLTLPEHVVPADNAEGKNLLHDFSDGLTLTVDTDKADKITA
                     VRVVWNTDAVPQKAEKLSKAAAALIAATAPGDRTLLRDTGDQIKMAIDSHNAQKEPTR
                     EWARGGIAYKVTVTNLPSVVLTAKAE"
     gene            3335..4393
                     /locus_tag="WHR98_001601"
     CDS             3335..4393
                     /locus_tag="WHR98_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308260.1"
                     /translation="MKNKLTLRYFKITRCGYWSGSSKEPNHYEDLLKTLTHLETYVKG
                     KTIEETGISRDDKEPSTFLLDICKKNGLWLLAFWNPAAESSSDEIVSLNMKSKLGQVD
                     SSPVTAGNGKTFGFVSYFLIWPEHNFYSTILSPNATLAGRTEFEEYMLNFLWIDPNFI
                     EKTTYEETSTDGIIHTMERTNFKLPLKINGTPVPRFAGKLAKSPSEKEYVISNYDQVT
                     QVHNQCTVKVTSGQSSSGILKKMLPSFFGSTELFAPLKTIRVNHSVSAAFENKSNLKD
                     WIEDWEKNSFDLDKDDCGFKLKNDDKIYWIRGNVIKCELDVNLHKENGIYPAAKILDI
                     IDQRKDYVLNEFKLSDDS"
     gene            4383..4889
                     /locus_tag="WHR98_001602"
     CDS             4383..4889
                     /locus_tag="WHR98_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308261.1"
                     /translation="MILRNIFLICSAFMIGVAWYLGANIRFEEQWVLYEALRTTASII
                     FAVVGVWLAIVYPERLKSPFSQTFSSPVYRRGFKQLFSPVISSIFILSIVLLVGLLAP
                     LLKHIEAIIQYIPLCRKISFSLLASLTMWQIYTVLSVLVPLLNILSKNENDCHASNII
                     NKLKGEQN"
     gene            4993..>5272
                     /locus_tag="WHR98_001603"
     CDS             4993..>5272
                     /locus_tag="WHR98_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HEZ2308262.1"
                     /translation="MSTKFNQFINRVLSHEGGYVNHPKDPGGETNWGITKRTAQANGY
                     NGSMRAMTREQAIGIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNA"
BASE COUNT         1332 a         1142 c         1305 g         1493 t
ORIGIN      
        1 gtgagtttat tttggggcgg cggcaggtcg ggggcaagcg gcgtggggct tggttgtggt
       61 ttttaggttt gggggtgggt aaaaaatgcc gtacccggcg ggcaggcttc gcactctgaa
      121 ggtttcagac ggcgtttgtt ttttctgtcc aatcgaggaa ctgccgccat ttttccagcg
      181 gcatatcggc ccgccgcgtt tcggtatcgg gttcggcttc ccagcggcct acctgtatgt
      241 agtgcttcac cccgacgatt tgcgccaact cggcctgtgt cagtttgcag cggttgcgca
      301 gggtgcgaag gttgtaaggc gtgtagccga gttccatgtc gttgcggttt attttgtttc
      361 gcatattttt ttgactgccc ggcggcaggt ttcggtaagg acggcggcaa atcgggcttc
      421 gtctgccggt tttccgtcga aaaaaataaa atcgtaaagg gtgatgccgt tttcggaatg
      481 gcggtaatgc ccgcccgggc attcgccgtc tgtctgcctg tggattttgg caatcaggcg
      541 gggatagcgg caatgggtaa tgaaacggct tgcgccgtct tgcccgataa tccattcggg
      601 gtagcggttg aatagtgcgg ctctgttcat tttgttcggg ggataaagcc cctcgcgggg
      661 cttgtggtca ggcaaatttg aatatcagtg ccaacacggc ggcgatggcg gtaaccagcc
      721 cggtggccgc catcatggga taccatcggg attcttgggc tatttttacg gattcggcgt
      781 tgattttgtg cgcgtctgca atgattttgg cgatttcgac atctactttt ctcagactgg
      841 agtgtttcat ttcttgttcg attatgttca tcgtacttcc tttcgttttt ggcggttgcc
      901 gccgcttgtc ggatggcagg atgtctgcca tgtgtatata ttgatacctt ttaggtttta
      961 ttgcaagtgt tttgggcggc ggcttcgtat gcttggcggt ggcggcggct gtaccattcg
     1021 gcgagttcgc gccgctcttg gaggcggtag ctgtcggcgg tcaggtagtg gtgcaggctt
     1081 gagaagccgg cgcgttggag ggcggcgcgg ctgatgtggc cgagggcgag gtctgttgtg
     1141 agggtgtctt ttccggcggt caggctgatg ttggtgaaga ggtggcggaa tccgtgcatt
     1201 gtgtgtttgg atttgccggg ggtgctgccg tcatagccca gtcgtcggat ggcgttgtgg
     1261 gcgaatttga tgctgatgtg gtcgggatgg ggggcgggtt tgcgccgtgg gcggatgccg
     1321 gggaaaaggt ggatgttgtc gccggtctgt gtgtgcagct ctcggagtat ttctaccgcc
     1381 cagtccgaca gtgggacggt aaaggggtgt ttggtcttca tgtcggcggc ggggatgtgc
     1441 cataaccggg cggtgaggtc gatgtcttgc cagcgggcgg aaagcagtgc ggacggacgg
     1501 gatgacttcc ccggtttccc catcaatccg cgccgcctcg atttttccgt tggcgcgcag
     1561 catttccacc gcctgccgca ccgacatcaa ccgcttgccg ttgcgcctca tcgcctccac
     1621 caaaaccgcc gaaatcaatt tggcttcttc cgttttaagc tccgtcttgc ccgcatcgct
     1681 gcgccgtttg cgcgtcggct tgatgctgac cgcctccagc ttgcggtata gcgtggcaag
     1741 gctgatgccc aattcctgcg cctgctgctt aagatatgca gagcgtgcgc cgcgtcccat
     1801 tgcttccgcc tgattctcga ctgccttaag acgctcaatc attgccggat tcatcgcctt
     1861 ctcccgtttc accgcccaac cattccggca cattgtctgt cggtgcttca gtcggcaggg
     1921 catagctttc gcgcagttgc tcgcagtcca aaataatttg attgagcgtg ccgaccatct
     1981 ttgcctgatg gctgatctcg tgtgcctcac tgtgcgcatt aagttggtcg aacaaatctt
     2041 tcaaacggct cacttgactg cggataccga cctcaaggct tgttaactgc atcatttatg
     2101 atttgttagg ggttttagac tgctatcaaa aatcacagtc ctgtcccaac cctaaaagcc
     2161 actgttgctt tgtttcagac gacatttttc tatggcatgg atcaagacca acgtttgaaa
     2221 tcagtcttga tctaactgga aagaaaaaag aaacatcctc tgcaaagaaa tttgtgatgc
     2281 cttgtattaa tttccgtcac cataggattg aaaaagaaac ctacttagga aattggaatg
     2341 aacaaattgc cgcattggca gtaaaacaaa atatagattg gtgtccaagt tttgatattg
     2401 agaattttag acagtatgaa taattactat ctatatagga attgcagcag cgatgtgtta
     2461 tgggtcaaac gtatccaacg ccaaatcgac ggcagcctac tcttgatttc tgacaattca
     2521 acctatccac ccatgccctt ggcactggcg gaacaccccg atattcaaat catcgggcag
     2581 gtagtgcagg tatcaaaaga cttgaactag acacaatcaa aaagggaaat agaatgaaaa
     2641 tactcgcttt attaattgcc gctacctgtg ctttatctgc gtgtggcggc caagctgaag
     2701 aacaaccggc atctgcccaa cctcaagagc aggcacaatc cgaattaaaa accatgccgg
     2761 taagctatac cgactatcaa tcagtagcca ataaagggct tgccgaccaa aaaactggtc
     2821 tgacccttcc agaacatgtt gttcctgccg acaatgcgga agggaagaat ctgctgcatg
     2881 acttttcaga cggcctcaca ttaaccgttg ataccgataa agccgacaaa attactgccg
     2941 tccgagtagt ttggaataca gatgcagtgc ctcaaaaagc ggaaaaactg tccaaagccg
     3001 ccgcagcctt gattgcggca accgccccag gagaccgcac actgctgcgt gataccggcg
     3061 accaaatcaa aatggcaatt gacagccata atgcgcaaaa agagccaacc cgagaatggg
     3121 cgcgtggtgg gattgcttat aaagtcactg ttactaattt gccgagcgtg gttttgacag
     3181 caaaagctga ataacctgca ttacagccac aattaggagc agacggagat gatgtttata
     3241 gagcctgctg agaataaata actgataaaa aagctgtctg aaaaggtttc ggatagttag
     3301 gatagctatc tatttttaat atattagaga gaatatgaaa aataaactga ctttacgtta
     3361 tttcaaaata actcgttgcg gttattggtc tggttcttca aaagaaccta atcattatga
     3421 ggacttatta aaaactttaa ctcatttaga gacatatgtt aaaggtaaaa ctattgaaga
     3481 gactggaatt agtcgtgatg ataaagagcc aagcactttc ttgctcgata tctgcaaaaa
     3541 aaatggtctg tggttgcttg ctttttggaa tcctgccgca gaaagctctt cagatgaaat
     3601 tgtttcttta aacatgaaaa gtaaactagg tcaagttgat tctagcccag taacagcagg
     3661 aaatgggaaa acttttggct tcgttagtta ttttcttatt tggccagaac ataattttta
     3721 ctcaacgatt ctttctccta atgcaacttt agctggacga acagagtttg aagagtacat
     3781 gcttaatttc ttgtggattg atcctaattt tatagaaaag actacctacg aagaaacttc
     3841 aacagacgga ataattcata ccatggagcg aactaatttt aaattgcctc ttaaaattaa
     3901 tggaactcct gtgccacgtt ttgcggggaa actagctaaa tctccttcag aaaaagagta
     3961 tgtcattagt aattatgacc aagtaaccca agtgcataat caatgcacgg taaaggttac
     4021 ctctggacaa agttcaagtg gaattttgaa gaaaatgtta ccaagctttt ttggttcaac
     4081 agaattgttt gctccattaa aaaccattcg tgtaaatcat tctgtttctg ctgcatttga
     4141 aaacaaatca aatcttaagg attggattga agactgggaa aaaaattctt ttgatttaga
     4201 taaagatgat tgtggcttta agttaaaaaa cgatgacaag atttattgga ttcgaggaaa
     4261 tgtcatcaaa tgtgaattag acgtcaacct tcataaggaa aatgggattt atccagctgc
     4321 taaaattcta gatataatag accaaaggaa agattacgtt ttaaacgaat tcaaattaag
     4381 tgatgattct tagaaatatt ttcctaatat gctctgcatt catgattggt gtagcctggt
     4441 atttaggtgc taatatccga tttgaagagc aatgggtatt gtatgaagcc ttgagaacaa
     4501 ctgcatcaat tatttttgca gttgttgggg tttggttggc tattgtctat cccgaacgat
     4561 taaaaagccc ttttagtcaa actttctcct ctccggtata tcggcgtgga ttcaaacagc
     4621 ttttttcccc tgttataagt tccattttta ttttaagtat tgtgttactt gttggtttgt
     4681 tggctccttt gctcaaacat attgaggcaa taattcaata tatcccactt tgtcggaaaa
     4741 tctcatttag cctgttagca agcttgacga tgtggcaaat ttatacggtt ttatctgtat
     4801 tagtgccttt gttaaatatt ttaagtaaaa atgaaaatga ctgtcatgca tccaacatta
     4861 ttaacaagct aaagggtgaa cagaattagc tatgtgattt ttagtgtaaa ctgcttttaa
     4921 ctcgtattaa aaggccactc ttttaatacc tcctaaaatc cctgtaccta tcaatagata
     4981 cagggatttt ttatgtccac caaattcaac caattcatca accgcgtcct ctcccacgag
     5041 ggcggttacg tcaatcatcc caaagacccc ggcggcgaaa ccaattgggg catcactaag
     5101 cgcaccgcac aggcaaacgg ctacaacggc tccatgcgcg ccatgacgcg tgaacaggct
     5161 atcggcattt accgaaaggc gttttgggag cgttaccgcg ccgaccaaat gccggaagcg
     5221 gtcgcgttcc aattttttga tgcctgcgtc aaccacggtt acggcaatgc cg
//
LOCUS       DAWGNT010000136         5210 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.136, whole genome shotgun sequence.
ACCESSION   DAWGNT010000136 DAWGNT010000000
VERSION     DAWGNT010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5210
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.136"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(14..430)
                     /gene="dksA"
                     /locus_tag="WHR98_001604"
     CDS             complement(14..430)
                     /gene="dksA"
                     /locus_tag="WHR98_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HEZ2308263.1"
                     /translation="MAKLTEQDILNWSGPEDDYMNDDHLAFFRELLVKMQDELIENAS
                     ATTGHLQEHESAPDPADRATQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCA
                     DTGEPIGLKRLLARPTATLSVESQERRERMKKQFAD"
     gene            complement(577..1368)
                     /locus_tag="WHR98_001605"
     CDS             complement(577..1368)
                     /locus_tag="WHR98_001605"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEZ2308264.1"
                     /translation="MNVYFLGGGNMAAAVAGGLVKQGGYRIHIANRGAEKRERLQKEL
                     GVETSETLPELHSDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLPVDTLSRYIGG
                     TRRIVRVMPNTPGKIGLGVSGMFAEAEVSETDRRIADRIMKSVGLTVWLDDEEKMHGI
                     TGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQ
                     KNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACVRRSQEMERQYQ"
     gene            complement(1459..1824)
                     /locus_tag="WHR98_001606"
     CDS             complement(1459..1824)
                     /locus_tag="WHR98_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEZ2308265.1"
                     /translation="MEIRAIKYTAMAALLAFTVAGCRLAGWYECSSLSGWCKPRKPAA
                     IDFWDIGGESPPSLEDYEIPLSDGNRSVRANEYESAQQSYFYRKIRKFEACGLDWRTR
                     DGKPLIETFKQEGFDCLKK"
     gene            complement(1824..2510)
                     /locus_tag="WHR98_001607"
     CDS             complement(1824..2510)
                     /locus_tag="WHR98_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEZ2308266.1"
                     /translation="MTVLQERYCEVSDRIGKLVLQAGRDPHSVSLIAVGKTFPSDGIR
                     EVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTIC
                     RLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRG
                     LMCVAKAGGSEAELKTQFQTMQKLLADLNTAGVKADVLSMGMSDDMPAAIACGATHVR
                     IGSAIFGKRG"
     gene            2630..3673
                     /locus_tag="WHR98_001608"
     CDS             2630..3673
                     /locus_tag="WHR98_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011798741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HEZ2308267.1"
                     /translation="MQITDLLAFGAKNKASDLHLSSGISPMIRVHGDMRRINLPEMSA
                     EEVGNMVTSVMNDHQRKIYQQNLEVDFSFELPNVARFRVNAFNIGRGPAAVFRTIPST
                     VLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMINYINETQPAHILTIED
                     PIEFVHQSKKSLINQRELHQHTLSFANALRSALREDPDVILVGEMRDPETIGLALTAA
                     ETGHLVFGTLHTTGAAKTVDRIVDVFPAGEKEMVRSMLSESLTAVISQNLLKTHDGNG
                     RVASHEILIANPAVRNLIRENKITQINSVLQTGQASGMQTMDQSLQSLVRQGLIAPEV
                     ARRRAQNSESMSF"
     gene            3836..5062
                     /locus_tag="WHR98_001609"
     CDS             3836..5062
                     /locus_tag="WHR98_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HEZ2308268.1"
                     /translation="MNTDNLHDILDEMVQVYSQKKQSRSETPAEIGAHFHPLLDRLCE
                     TAEAQNASDILISKGFPPSLKINSALTPQPQKALTGEETAAIAASTMNAEQSEIFRRD
                     GEINYSVQSRSGTRYRANAYHSQGSAGLVLRRINHVIPQMQELGLPEKLKDLAVAPRG
                     LLIIVGPTGSGKSTTMATMLEHRNKTLPSHIVTIEDPIEFIYKPRRCIFTQREIGVDT
                     INWQTAVQNAMRQSPDVVCIGEVRSRESMEYAMQLAQTGHLCIFTLHANTAPQSLERI
                     LNFYPKEQHNQILIDIALNLTGIICQRLALKQDKTGRTAVVDLLINTPAIQDFILKGD
                     LMNISKIMETAKTDGMQTMDQNLFELYRHGIISYEEALRQSVSANNLRLHIQLHKEGK
                     TPELLYDRVNGLNLIS"
BASE COUNT         1310 a         1611 c         1175 g         1114 t
ORIGIN      
        1 ttgtttgccg ccatcagtcg gcaaactgtt ttttcatcct ctctcggcgt tcttgggact
       61 caacagataa agtggctgtc gggcgtgcca gcagccgctt cagaccgata ggctctcccg
      121 tatcggcaca gaatccataa tccccttcat caatattgcg gatggtcgcc tgtattttac
      181 tgagaagttt ccgttcccga tcgcgggtac ggagttccaa tgcgtactct tcttcctgtg
      241 tggcacggtc ggcaggatcg ggggctgatt cgtgttcttg gagatgccct gtcgtagcgg
      301 aagcattttc gatgagttcg tcttgcattt ttaccagcaa ttcgcggaaa aaagccaaat
      361 ggtcgtcatt catataatcg tcttccggcc cgctccaatt caaaatatct tgttctgtca
      421 gctttgccat aatgtatatc ctctcggttc accgcaaaaa acaaagcacc acaaagtggc
      481 tttattcctt tgatttttat aaggcttatt gcctaaggcg tttttgaaaa cgcgcatcat
      541 aacacgtttt ggattggttt ttttattttc tttacattat tgatattgcc gttccatttc
      601 ctgcgaacgg cgcacacagg cacaaacgcc ctcgcttatg gcttcggcga cacgatgccg
      661 cctgaaagct tccacggctt cgtgggttgt cccgcctttt gacgttacat ttttttgaag
      721 cttctcgaaa tcttcacccg tctgctcggc aagggcaacc gctcctttaa acgttgccag
      781 actgagcgcg cgtgcttctg ccatatcaaa cccttgtcgg atggcggcat tttgcaatgc
      841 gtccagcaga taaaacacat aagccggtcc gctgccgctg ataccggtaa tgccgtgcat
      901 tttttcctca tcatccaacc aaacagtcaa accgactgat ttcatgattc gatcggcaat
      961 cctgcggtct gtttccgata cttccgcttc ggcaaacata ccggatacgc ccagcccgat
     1021 ttttccgggt gtattcggca taacccggac aatgcggcgt gttcccccaa tgtaacggct
     1081 gagcgtatcg accggcaatc cggctgcgac agaaagcacc aatgcgccgt tggtgcggat
     1141 atttttgcac gcggcttcca tatcctgcgg cttgacggca aggattaaaa catcgtcgga
     1201 atgaagctcc ggcaaggttt cagaagtttc gacccccaac tctttttgca aacgttcgcg
     1261 cttttccgca ccccgattgg ctatatggat gcggtaaccg ccttgtttga ccaatccgcc
     1321 cgcaacggca gccgccatat tgccgccgcc gagaaaataa acattcatta tttctaccct
     1381 attcaaaatt acctgactaa attcattccc aattttttac catcggacgc gctcggacag
     1441 accgttgcgc cgcaacccct actttttcaa acaatcaaaa ccttcctgtt tgaacgtctc
     1501 aatcaaaggt ttgccgtcac gcgtacgcca atccaacccg caggcttcaa acttccttat
     1561 tttcctgtaa aagtaagatt gttgtgcgga ttcatattca tttgccctga cggaacgatt
     1621 gccgtctgaa agcggtatct cgtagtcctc taaagacggc ggactctcgc cgccaatatc
     1681 ccaaaaatcg atggcggcag gttttctcgg cttacaccag ccggacaggg acgaacactc
     1741 ataccaacct gccaaccggc agcctgcaac cgtaaatgca agcaacgcag ccattgccgt
     1801 atattttatt gcccgaattt ccatcagccc cttttcccga aaatcgcact gccgatacgg
     1861 acatgtgttg caccgcacgc aatggcggca ggcatatcgt ccgacatccc catagacagc
     1921 acatccgcct taacgccagc cgtattgagg tcggcaagca acttttgcat ggtctgaaac
     1981 tgggttttca attctgcctc gctgccgccg gctttggcaa cacacatcag tccgcgtacg
     2041 acgatattcg gcaacttcgc cacttcgacc gcaagcacga ccgcttcttc gggcgcgaca
     2101 ccgtgtttcg ccgcctcgcc cgcaatgttc acctcgatac acacctgcaa aggcggcatt
     2161 gaggaaggac gttgcccgct cagccggaca gcggttttca gacggcatat ggtatgcacc
     2221 caatgcgcgc gttcggcgac aaacttggtt ttgttggact gcacatcgcc gatgacgtgc
     2281 cacacgatgt cggtcaaatc cgccaactct tccgttttgc cgtaccactc ctgaatatag
     2341 ttctcgccga aatcacgctg tccggcggcg taaacttcgc ggatgccgtc tgaagggaaa
     2401 gtcttaccga cggcaatcag gctgacggaa tgcggatccc tgcccgcctg cagaaccaat
     2461 tttccgatac ggtcggacac ctcacaataa cgttcttgca acaccgtcat agattatccc
     2521 ctaattaaaa atgattaaac agttgaaacc cctccagtca gggcggtaca atcaaggttg
     2581 ttagaaccat tccaaccaat cgaaacatta tactaaacag agccgcatta tgcagattac
     2641 cgacttactc gccttcggcg ctaaaaacaa agcatccgac cttcacctga gttcgggcat
     2701 atcccctatg attcgggttc acggcgatat gcggcgcatc aaccttcccg aaatgagcgc
     2761 ggaagaggtc ggtaatatgg taacttcggt gatgaacgac caccagcgga aaatctacca
     2821 gcaaaacttg gaagttgact tctcgttcga actgcccaac gtcgcccgat tccgcgtcaa
     2881 cgccttcaac atcggccgcg gtcccgccgc cgtattccgc accattccca gcaccgtctt
     2941 atcgctggaa gaattgaaag ccccgagcat tttccaaaaa atcgcagaat cgccgcgcgg
     3001 catggtattg gttaccggcc ctaccggttc gggcaaatcg accacgcttg ccgcaatgat
     3061 caactacatc aacgaaaccc agccggcaca catcctgacc atcgaagacc cgatcgaatt
     3121 cgtccaccaa agcaaaaaat ccctgattaa ccagcgcgag ctgcaccagc acaccctcag
     3181 cttcgccaac gcgctgcgtt ccgcattgcg cgaagacccc gacgttatcc ttgtcggcga
     3241 gatgcgcgac ccagaaacca ttggcttggc actgaccgcc gccgaaaccg gacacttggt
     3301 tttcggcacg ctgcacacga ccggcgcagc aaaaaccgtc gaccgtattg tggacgtatt
     3361 cccggcggga gaaaaagaaa tggtgcgctc tatgctgtcc gaatcgctga ccgccgtcat
     3421 ctcccaaaac ctgctgaaaa cgcacgacgg caacggccgt gtcgcctcgc acgaaatcct
     3481 gattgccaac cccgccgtcc gcaacctcat ccgcgaaaac aaaatcacgc agattaactc
     3541 cgtcctgcaa accgggcagg cgagcggtat gcagacaatg gaccaatcgc tgcaatcgct
     3601 ggtgcgccaa gggctgatcg caccggaagt cgcacgcaga cgcgcgcaaa acagcgaaag
     3661 tatgagtttc tgacacacaa ccgccttccg gccataccgg cgggaaaaca aggcgcaaac
     3721 acgcgaggcg ggacgcagca tcccgcccgg ctacctttcc gaacaagaag cgtccgcctt
     3781 cctgttgaaa cctgccgccg caaactgcaa ggcttaaacc gaaaagaagc taacgatgaa
     3841 taccgataac ctgcacgaca tcttggacga aatggttcaa gtgtattctc aaaaaaaaca
     3901 aagccgatcc gaaaccccgg ccgaaatcgg cgcacacttc cacccgctgc tcgaccgcct
     3961 gtgcgaaacc gcagaagcac aaaacgcgtc cgacatcctt atcagcaaag gattcccgcc
     4021 ctcgttgaaa atcaacagcg cattaacccc gcagccgcaa aaggcgctga cgggcgagga
     4081 aaccgccgcc atcgccgcat cgacgatgaa cgccgaacaa tcggaaatat tccggcgcga
     4141 cggcgaaatc aactactccg tccagtcgcg cagcggcacg cgctaccgcg ccaacgccta
     4201 ccacagccaa ggcagcgcag gtttggtttt gcggcgcatc aaccacgtca tcccgcaaat
     4261 gcaggaattg ggcctgcccg aaaaactcaa agacctcgcc gtcgcaccgc gcgggctgct
     4321 gattatcgtc gggcctaccg gttcgggcaa atccaccacg atggcgacta tgctcgaaca
     4381 ccgcaacaaa accctgccca gccatatcgt taccatcgaa gacccgattg aatttatcta
     4441 caaaccgcgc cgctgcatct ttacccagcg cgaaatcggc gtcgacacca taaactggca
     4501 gacggcggta caaaacgcta tgcgccagtc ccccgacgtg gtctgcatcg gcgaagtccg
     4561 cagcagggaa agtatggaat acgcgatgca gctcgcccaa accggccacc tgtgcatttt
     4621 tacgctccac gccaacaccg cgccgcagtc gctcgaacgc atactcaact tctaccccaa
     4681 agaacagcac aaccaaatac tgatcgacat cgccctcaac ctgaccggca tcatctgcca
     4741 acgcctcgcc ctcaaacaag acaaaacggg caggacggcg gttgtcgact tgctcatcaa
     4801 cacgcccgcc atccaagact tcatcctgaa gggcgacctg atgaacatca gtaaaatcat
     4861 ggaaaccgcc aaaaccgacg gaatgcagac gatggatcaa aaccttttcg aactgtaccg
     4921 tcacggcatc atcagttacg aagaagccct gcgccagtcc gtttccgcca acaacctgcg
     4981 attgcacatc caactgcaca aagaaggcaa aacgcccgaa ctcctttacg acagggtcaa
     5041 cggtctcaac ctcatttcct gatccgcaaa acccaatgcc gtctgaaaac cgcatccccg
     5101 ttttcagacg gcatgatttt atccgcccca ttcatgtgct acactttata gtggattaaa
     5161 tttatagtgg attaacaaaa atcaggacaa ggcgacgaag ccgcagacag
//
LOCUS       DAWGNT010000137         5203 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.137, whole genome shotgun sequence.
ACCESSION   DAWGNT010000137 DAWGNT010000000
VERSION     DAWGNT010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 5203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5203
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.137"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            188..1372
                     /gene="ubiM"
                     /locus_tag="WHR98_001610"
     CDS             188..1372
                     /gene="ubiM"
                     /locus_tag="WHR98_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-demethoxyubiquinol-8 5-hydroxylase UbiM"
                     /protein_id="HEZ2308269.1"
                     /translation="MSLHSDILVVGAGPAGLSFAAELAGSGLKVTLIERSPLTVLQNP
                     PYDGREIALTHFSREIMQRLGMWDKIPENEIYPLRDAKVLNGRSDYQLHFPQPTEARG
                     EPADCLGYLISNHNIRRAAYEVVSQLDNITILTDTVVKEVKTSDNEAQVILENGKILT
                     ARLLLAADSRFSQTRRQLGISSDMHDYSRTMFVCRMKHTLSNQHTAYECFHYGRTIAL
                     LPLEEHLTNTVITVDTDKINSVQNLSPEELAASVKEQLKGRLGDMELVSSIHHYPLVG
                     MIAKRFYGKRSALIGDAAVGMHPVTAHGFNLGLSSADILAKLILEAEQRGQDIGAASL
                     LEKYSSKHMLHAHPLYHGTNMMLKLFTNETAPAKLLRGLVLRAGNNFPPLKKLITKQL
                     TG"
     gene            complement(1643..1798)
                     /gene="rpmG"
                     /locus_tag="WHR98_001611"
     CDS             complement(1643..1798)
                     /gene="rpmG"
                     /locus_tag="WHR98_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009766925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEZ2308270.1"
                     /translation="MRDKIKLESSAGTGHFYTTTKNKRTMPGKLEIKKFDPVARKHVV
                     YKETKLK"
     gene            complement(1830..2063)
                     /gene="rpmB"
                     /locus_tag="WHR98_001612"
     CDS             complement(1830..2063)
                     /gene="rpmB"
                     /locus_tag="WHR98_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007586227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEZ2308271.1"
                     /translation="MARVCKVTGKRPMSGNNVSHANNKTKRRFLPNLQSRRFWVESEN
                     RWVRLRVSNAALRTIDKVGIDVVLADLRARGEA"
     gene            complement(2313..3839)
                     /gene="farB"
                     /locus_tag="WHR98_001613"
     CDS             complement(2313..3839)
                     /gene="farB"
                     /locus_tag="WHR98_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     permease subunit FarB"
                     /protein_id="HEZ2308272.1"
                     /translation="MDYPPLKGAALAWVTLSLGLAVFMEVLDTTIANVAVPVIAGNLG
                     AATTQGTWVITSFSVANAVSVPLTGFLAKRIGEVKLFTAAAVGFVITSWLCGIAPNLQ
                     SLVVFRILQGFIAGPLIPLSQSLLMASYPPAKRTLALALWAMTVVVAPVLGPILGGWI
                     SGNWHWGWIFFINIPIGIISAWITWKHLKYRETETVKMPTDYVGLTLMVVGIGALQMM
                     LDRGKELDWFASGEIITLGVVALVCLSYFIVWELGEKYPIVDLSLFKDRNFTVGVIAT
                     SLGFMVYMGTLTLLPLVLQTNLGYTSTWAGLAAAPVGILPVFLSPLIGRFGNKIDMRL
                     FVTASFLTFAFTFYWRTDFYADMDIGNVIWPQFWQGAGVAMFFLPLTTITLSHMKGGQ
                     IAAAGSLSNFLRVLMGGVGVSFVSTLWERREALHHTRFAEHITPYSATLHETAAHLSQ
                     HGVSDIQTLGIINNTITQQGFIIGSNEIFMAGSLLFIIMIPVIWLAKPPFHNGGGGGH
                     "
     gene            complement(3863..5017)
                     /gene="farA"
                     /locus_tag="WHR98_001614"
     CDS             complement(3863..5017)
                     /gene="farA"
                     /locus_tag="WHR98_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002224866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid resistance MFS efflux transporter
                     adaptor subunit FarA"
                     /protein_id="HEZ2308273.1"
                     /translation="MDTHTDETKLQNTQAKRKRRLTALTLLFALAAAAAGSAFFLWWQ
                     HEEETEDAYVAGRVVQVTPQKGGTVRKVLHDDTDAVKKGDVLAVLDDDNDVLAYERAK
                     NELVQAVRQNRRQNAATSQAGAQVALRRADLARAQDDLRRRSALAESGAVSAEELAHA
                     RAAVSQAQAAVKAALAEESSARAALGGQVSLREQPAVQTAIGRLKDAWLNLQRTQIRA
                     PADGQVAKRSVQVGQQVAAGAPLMAVVPLSDVWVDANFKETQLRHMKIGQPAELVSDL
                     YGKQIVYRGRVAGFSAGTGSAFSLIPAQNATGNWIKVVQRVPVRIVLNREDVDRHPLR
                     IGLSMTVKVDTSAAGAPVSKTPGAALPEMESTDWSEVDRTVDEILGQSAP"
BASE COUNT         1346 a         1455 c         1237 g         1165 t
ORIGIN      
        1 ataccccaca cccgatttga tacacattaa gctgaaagta aaaatccgca tacaccctcc
       61 cctgcatatt tcttcaacag tgggttttga tataatcgcc tatctgttac agatagttca
      121 aacggcattc aaacccttac aaataccgtc tgaaatcatc ggcatccgtc tatgcaaagg
      181 atattttatg agtttacaca gcgacatcct cgtcgtcggc gcaggtccgg cgggtttaag
      241 ttttgcagcc gaacttgccg gcagcggttt gaaagttacc ctgatcgaac gcagcccact
      301 gactgttctg caaaatcctc catatgacgg acgcgaaatc gccctgaccc atttttcccg
      361 cgaaatcatg cagcgtctgg gtatgtggga caaaattccc gaaaatgaaa tttacccttt
      421 gcgcgatgcc aaagtgctga acggacgttc cgactaccag ctccactttc cccaaccgac
      481 cgaggcgcgc ggcgaacctg ccgactgttt gggctatctt atttccaacc acaatatccg
      541 acgcgctgcc tacgaagtcg tatcccaact cgacaacatt accattctga ccgatacggt
      601 tgtcaaagaa gtcaaaacat ctgacaacga agcacaagtc attttggaaa acggcaaaat
      661 cctgactgca cgcctgcttt tggcggcaga cagccgtttc tcacaaaccc gacgacaact
      721 cggtatctcc tccgatatgc acgattacag ccgaaccatg ttcgtctgcc gtatgaaaca
      781 taccctttcc aaccaacata ccgcttacga atgcttccat tacggacgca ccatcgcact
      841 gctgccgctg gaagagcacc tgaccaatac cgtcattacc gtcgataccg ataaaatcaa
      901 cagcgttcaa aacctttcgc ccgaagaatt ggcggcaagc gtaaaagaac aactcaaggg
      961 taggcttggc gacatggaac tggtcagcag catccaccat tacccccttg tcggtatgat
     1021 tgccaaacgt ttctacggca aacgcagcgc gctgatcggc gatgcggctg tcggtatgca
     1081 ccccgttaca gcacacggtt tcaacttggg gctttccagc gcagatattt tggcaaaact
     1141 gatactcgaa gccgagcagc gcggtcagga catcggcgcg gcttccttgt tggaaaaata
     1201 cagcagcaaa catatgctgc acgcccatcc gctttatcac ggaaccaata tgatgctgaa
     1261 actgtttacc aacgaaaccg cgccggcaaa actgctgcgc ggtttggtat tgcgtgccgg
     1321 caacaacttc ccgccgctga aaaagctgat taccaaacaa ctgaccggtt gaaaactgcc
     1381 gaaatgccgt ctgaaacgtt tcagacggca tttttgtatt atagtggatt aacaaaaatc
     1441 aggacaaggc gacgaagctg cagacagtac aaatagtacg gaaccgattc acttggtgct
     1501 tcagcacctt agagaatcgt tctctatcct tggcagacgg tttgcagcag attcgcatac
     1561 ggcagatgtt tcaagcggaa aagaaacacg ataaaaataa aaaagcctcc gaacagtcgg
     1621 aggctttgct ttcaaactga aattatttca gtttggtttc tttgtacact acgtgtttgc
     1681 gggcaaccgg atcgaatttt ttaatttcca gtttgccggg catagtgcgt ttgtttttgg
     1741 tagtggtgta gaagtgacca gtacctgcac tggattccag tttgatttta tcgcgcattg
     1801 cagtaatcct taattaaata gtgtttaaat taagcttcgc cgcgagcacg caaatcagcc
     1861 aatacgacat caatgcctac tttgtcgatg gtacgcagtg cagcgttgga aacgcgcagg
     1921 cgaacccagc ggttttcact ttctacccaa aaacgacgtg attgcaagtt gggcaaaaaa
     1981 cggcgtttgg ttttgttgtt ggcgtgcgat acgttgttgc cggacatcgg gcgcttaccg
     2041 gtcactttgc aaactcgtgc catggtcagt ctccaaactt ctaaaatagt aaaacgcgat
     2101 ttataccacg aaaaacagtg ttcgttcaag tgttttagag aaaaacggct gttttacgcg
     2161 aattatcctg ccgattgttg cattcgggaa acgtttgccg atacgaaaca gacggaatgc
     2221 gattatagcg ggtttcacag atgcctgcat tctaaatact gtccgaacat atttccagta
     2281 ttttcagacg gcatttcaag ttttcaaatc cctcaatgtc caccgccgcc gccgttgtgg
     2341 aacggcggtt ttgccagcca tatgacgggt atcatgataa tgaataacaa gctgcccgcc
     2401 ataaagattt cgttcgagcc gataataaaa ccctgctggg taatggtatt gttgatgatg
     2461 cctagggttt gaatgtcgga aacgccgtgc tgggacaaat gagcggccgt ttcgtgcaat
     2521 gttgcggaat agggcgtgat gtgttcggca aagcgtgtat ggtgcaacgc ttcacgccgt
     2581 tcccacaggg tactgacgaa tgatacgccg acaccgccca tcagcacgcg caagaaattc
     2641 gacaggctgc cggcggcggc aatctgcccg cccttcatat gcgacagtgt gatggtggtc
     2701 agcggcagga agaacatggc aacgcctgcc ccctgccaaa actgcggcca gatgacgttg
     2761 ccgatatcca tatcggcata aaaatccgta cgccaataga aagtaaaggc aaaggtcagg
     2821 aagctggcag ttacgaacag gcgcatatcg attttattgc cgaacctgcc gattaacgga
     2881 gacaggaaaa caggcaggat gccgacaggt gcggcggcaa gccctgccca cgtggaggta
     2941 tagcccaggt tggtctgcaa cactaacggc agcagggtca gcgtccccat atacaccata
     3001 aaacccaatg acgtggcaat gacgccgacg gtaaaattcc gatctttaaa cagcgataaa
     3061 tcgacaatcg gatatttttc tcccaattcc caaacaataa aatacgacaa gcacaccagt
     3121 gcgactacgc ccaaggtaat gatttctcca gaggcgaacc agtcgagttc cttacccctg
     3181 tccagcatca tctgtaacgc gccgataccg actaccatca atgtaagccc gacatagtcg
     3241 gtcggcattt taacggtttc cgtttcccga tatttcaaat gtttccatgt aatccatgcc
     3301 gatatgatac cgatagggat attaatgaag aaaatccaac cccaatgcca gtttccggaa
     3361 atccagccgc cgagtatcgg cccgagaaca ggggcgacaa cgacggtcat tgcccacaat
     3421 gccagtgcca gcgtccgttt tgcgggcgga taggatgcca ttaacaggct ttgcgacaag
     3481 ggaatcagcg gcccggcgat aaagccctgc aagatgcgga aaacaaccag cgactgaagg
     3541 ttgggggcaa taccgcacag ccacgatgtg atgacgaaac cgacagcggc ggcggtaaac
     3601 aatttgacct cgccgatgcg ttttgccaaa aagcccgtca gcggcacgga aacggcgttt
     3661 gccacagaaa aggaagtgat gacccacgtc ccctgagtgg ttgccgcacc gaggttgccg
     3721 gcgatgacgg gaacggcgac attggcgata gtcgtatcta aaacttccat aaatacggca
     3781 agccccaaag acagcgtaac ccacgccaat gccgcaccct taagcggtgg ataatccatt
     3841 gtgtcctccg tttcagacgg catcagggcg cggattgccc gaggatttca tcgaccgtcc
     3901 gatcgacttc cgaccagtcg gtactttcca tttccggcaa tgccgcaccc ggcgtttttg
     3961 aaacaggcgc gcctgcggcg gaagtatcca ctttaaccgt catcgacaaa ccgatacgca
     4021 acggatgcct gtccacatct tcgcggttca gcacgatacg gacggggacg cgctgcacca
     4081 ctttaatcca gttgcccgtt gcgttttgcg ccggaatcag cgaaaacgcg ctgcccgtac
     4141 ctgccgaaaa acctgccacc ctgccgcgat aaacaatttg tttgccgtac aaatcggaca
     4201 ccagctcggc aggctgtccg attttcatat gccgcaactg cgtctcttta aaattagcat
     4261 ccacccacac atccgacagc ggcaccaccg ccatcagcgg cgcgcctgcc gccacctgct
     4321 gcccgacctg caccgaacgc ttcgccacct gaccgtccgc cggcgcgcgg atttgcgtcc
     4381 gctgaaggtt caaccacgca tctttcaacc tgccgattgc cgtctgaacc gccggctgtt
     4441 cgcgcaaaga aacctgaccg cccaaagccg cacgtgccga agattcttcc gccaaagccg
     4501 ctttgaccgc cgcctgcgcc tgagacactg ccgcacgggc gtgtgccagc tcttcggcgg
     4561 acaccgcgcc cgattccgcc aaagcagacc ggcggcgcaa atcatcctgt gcgcgtgcca
     4621 aatccgcccg gcgcaaggca acctgcgccc ccgcctgcga agtggcggca ttttgccggc
     4681 ggttttgccg caccgcctga accagctcgt tttttgcccg ctcgtaagcc agcacatcat
     4741 tatcgtcgtc caataccgcc agcacgtcgc cttttttcac ggcatccgta tcgtcgtgca
     4801 aaaccttccg caccgtaccg cccttttgcg gcgtaacctg aaccacgcgt ccggcaacat
     4861 aagcgtcttc cgtttcctct tcgtgctgcc accataaaaa aaacgccgac ccggcggctg
     4921 cggcggcaag cgcgaacagc agcgtcaatg ccgtcaggcg gcgtttgcgt ttggcttgcg
     4981 tgttttgaag ttttgtttcg tccgtgtgcg tatccataag attgggttcc gaatttcctg
     5041 atttcatata aacaatgttc tttcaatagg aagcagattc tatatccgcg caataacgca
     5101 atcaagtcag tattttagat gcaatattca aaaaacaacg cttcaggcgg caaaactgaa
     5161 aatatatttc gtttatataa tggattaaca aaaatcagga caa
//
LOCUS       DAWGNT010000138         4928 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.138, whole genome shotgun sequence.
ACCESSION   DAWGNT010000138 DAWGNT010000000
VERSION     DAWGNT010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4928
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.138"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(54..1538)
                     /gene="tldD"
                     /locus_tag="WHR98_001615"
     CDS             complement(54..1538)
                     /gene="tldD"
                     /locus_tag="WHR98_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HEZ2308274.1"
                     /translation="MPYNQAPDFLCADTMHPTYSAVQARLLEANRLSPELLAKSLCII
                     GAHHVDYADIYCQRTAYESWHLEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCI
                     DSINRSARAVRAIGAAGGKVSAKMPSETRGKPVCSASDPIAGLDSAAKVALLNKVEAI
                     AKAADPRIVQVMAGLTCEYDMVYIARLDGKHAADIRPMVRMNVTVIAKQGERREQGSA
                     GGGGRYDLAYFDENLVHRFVDSAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAV
                     GHGLEGDFNRKGTSVFSGRIGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVL
                     IEDGILVGYMQDETNARLTGTQSTGNGRRESYASAPMPRMTNTFMENGSYEPEEIIAS
                     IDKGIYAVNFGGGQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHVS
                     MIGNDTALDSGVGVCGKEGQSVPVGVGQPTLRIDAGLTVGGSAI"
     regulatory      1613..1716
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1783..3006
                     /gene="cytX"
                     /locus_tag="WHR98_001616"
     CDS             1783..3006
                     /gene="cytX"
                     /locus_tag="WHR98_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003519479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HEZ2308275.1"
                     /translation="MSGNASSPSSSAAIGLIWFGAAVSIAEISTGTLLAPLGWQRGLA
                     ALLLGHAVGGALFFAAAYIGALTGRSSMESVRLSFGKRGSVLFSVANMLQLAGWTAVM
                     IYAGATVSSALGKVLWDGESFVWWALANGALIVLWLVFGARKTGGLKTVSMLLMLLAV
                     LWLSAEVFSTAGSTAAQVSDGMSFGTAVELSAVMPLSWLPLAADYTRQARRPFAATLT
                     ATLAYTLTGCWMYALGLAAALFTGETDVAKILLGAGLGAAGILAVVLSTVTTTFLDAY
                     SAGVSANNISAKLSETPIAVAVAVVGTLLAVLLPVTEYENFLLLIGSVFAPMAAVLIA
                     DFFVLKRREEIEGFDFAGLVLWLAGFILYRFLLSSGWESSIGLTAPVMSAVAIATVLV
                     RLFFKKTQSLQRNPS"
     gene            3003..4103
                     /locus_tag="WHR98_001617"
     CDS             3003..4103
                     /locus_tag="WHR98_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEZ2308276.1"
                     /translation="MTRIAILGGGLSGRLTALQLAEQGYQIALFDKGCRRGEHAVAYV
                     AAAMLAPAAEAVEATPEVIRLGRQSIPLWRGIRCRLNTHTMMQENGSLIVWHGQDKPL
                     SSEFVRHLKRGGVADDEIVRWRADDIAEREPQLGGRFSDGIYLPTEGQLDGRQILSAL
                     ADALDELNVPCHWEHECAPEDLQAQYDWLIDCRGYGAKTAWNQPPEYTSTLRGIRGEV
                     ARVYTPEITLNRPVRLLHPRYPLYIAPKENHIFVIGATQIESESQAPVSVRSGLELLS
                     ALYAVHPAFGEADILEIATGLRPTLNHHNPEIRYSLARRLIEINGLFRHGFMISPAVT
                     AAAVRLAVALFDGKDAPERDEESGLAYIRRQD"
     gene            4124..4741
                     /gene="thiE"
                     /locus_tag="WHR98_001618"
     CDS             4124..4741
                     /gene="thiE"
                     /locus_tag="WHR98_001618"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEZ2308277.1"
                     /translation="MTFPPLKSPLKFYAVVPTADWVGRMVKAGADTVQLRCKALHGDE
                     LKREIARCVAACQGSHTQLFINDHWREAIEAGAYGVHLGQEDMDTADLAAIAAAGLRL
                     GLSTHSVAELDRALSVHPSYIASGAIFPTTTKQMPTAPQGLDKLREYVKQAGGTPVVA
                     IGGIDLNNARAVLATGVSSLAAVRAVTEAANPEAVVKAFQALWDG"
BASE COUNT          973 a         1524 c         1387 g         1044 t
ORIGIN      
        1 aatgtaaaag gccgcctgaa aacctttcag acggcatcgt gccggattcc gcgtcagatt
       61 gcgctgccgc cgacggtcag cccggcatcg atacgcaggg tcggctgccc cacgccgacg
      121 gggacgctct gcccttcttt gccgcacacg ccgacaccgc tgtccaacgc ggtatcgttg
      181 cctatcatcg aaacgtgttt cagcacttcg ggcccgttgc cgataatggt cgcgcctttg
      241 acggggtatt gcagcctgcc gccttccacc caccatgctt cggacgcgct gaacacaaat
      301 ttgccgctgg taatgtccac ctgtccgccg ccaaagttga cggcgtaaat gcctttgtcg
      361 atggacgcga tgatttcttc cggctcatag ctgccatttt ccataaaggt attggtcatg
      421 cgcggcatag gggcggaagc gtaactttcg cggcggccgt tgccggtgga ttgcgtaccc
      481 gtcaggcggg cgttggtttc gtcctgcata tagccgacca aaataccgtc ttcaatcaat
      541 acggtgcggc gggtttcgtt gccttcgtcg tcgatattga gcgaaccgcg ccggccggca
      601 atatcgccct gatcgacgac ggtaacgcct ttggcggcga cgcgctcgcc gattctgccg
      661 gaaaagacgc tggtcccctt gcggttgaaa tcgccttcca aaccgtgtcc gaccgcttcg
      721 tgcagcaaca cgcctggcca gccgttgccc aaaacgacgg tcatttcgcc ggcaggcgca
      781 ggacgggatt caagattggt cagggcttgt ttgacggcgg aatcgacaaa ccgatgcacc
      841 aagttttcat cgaaatacgc caaatcataa cgtccgccgc cgcccgcgct gccctgttcg
      901 cggcgttcgc cctgtttggc gataacggta acgttcatgc gcaccatcgg gcggatatcg
      961 gcagcgtgtt taccgtccag acgggcgatg tacaccatgt cgtattcgca ggtcaaaccg
     1021 gccatcactt gcacgatgcg cggatcggcg gctttggcga ttgcttccac tttgttcaac
     1081 agcgcgactt tggcggcgga atcgaggccg gcaatggggt cggacgcgga acaaaccggc
     1141 ttgccgcgcg tttcagacgg cattttggcg gacaccttgc cgcctgccgc cccaatcgcg
     1201 cggacggcgc gggcggaacg gtttatcgaa tcgatgcaca ggctgtcggc gtaggcaaag
     1261 gcagttttat cgcccgaaac ggcgcgcacg cccacgccct gattgatttg gaagctgccc
     1321 gatttgacga tgccctcttc caaatgccag ctttcataag cggtgcgctg gcagtagatg
     1381 tcggcgtaat cgacgtggtg cgcgccgatg atgcacaggc ttttggcgag cagttcgggg
     1441 gaaaggcggt tggcttcgag cagccgcgcc tgtacggcgg aataggtcgg atgcatagtg
     1501 tcggcgcata aaaaatcagg ggcttgatta tacggcattt gttatggaaa tgtgccgtgc
     1561 cgcctgaaat gtaagatttt tgccaacgcc ccctgctttt gtgtacactt aaagctcctt
     1621 gtcggagtgc cgccgccggg cggctgagat tgcgaaagca gaatccgtag aacctgtcgg
     1681 ggtaatgcct gcgtaggaaa caaaccgtca aatgccttat caggcttccg ttcccttttc
     1741 cgcacttccc cgcccacctt ccttcttttt aaaggacgtc atatgtcggg caatgcctcc
     1801 tctccttcat cttccgccgc catcgggctg atttggttcg gcgcggcggt ctcgattgcc
     1861 gaaatcagca cgggtacgct gcttgccccc ttgggctggc aacgcggtct ggcggctcta
     1921 cttttgggtc atgccgtcgg cggcgcgctg ttttttgcgg cggcgtatat cggcgcactg
     1981 accggacgca gctcgatgga aagcgtgcgc ctgtcgttcg gcaaacgcgg ttcagtgctg
     2041 ttttccgtgg cgaatatgct gcaactggcc ggctggacgg cggtgatgat ttacgccggc
     2101 gcaacggtca gctccgcttt gggcaaagtg ttgtgggacg gcgaatcttt tgtctggtgg
     2161 gcattggcaa acggcgcgct gattgtgctg tggctggttt tcggcgcacg caaaacaggc
     2221 gggctgaaaa ccgtttcgat gctgctgatg ctgttggcgg ttctgtggct gagtgccgaa
     2281 gtcttttcca cggcaggcag caccgccgca caggtttcag acggcatgag tttcggaacg
     2341 gcagtcgaat tgtccgccgt catgccgctt tcctggctgc cgctggccgc cgactacaca
     2401 cgccaagcac gccgcccgtt tgcggcaacc ctgacggcaa cgctcgccta tacgctgacg
     2461 ggctgctgga tgtatgcctt gggtttggca gcggcgttgt tcaccggaga aaccgacgtg
     2521 gcaaaaatcc tgctgggcgc aggtttgggt gcggcaggca ttttggcggt cgtcctgtcg
     2581 accgttacca ccacttttct cgatgcctac tccgccggcg taagtgccaa caatatttcc
     2641 gccaaacttt cggaaacacc catcgccgtt gccgtcgccg ttgtcggcac actgcttgcc
     2701 gtcctcctgc ccgttaccga atatgaaaac ttcctgctgc ttatcggctc ggtatttgcg
     2761 ccgatggcgg cggttttgat tgccgacttt ttcgtcttga aacggcgtga ggagattgaa
     2821 ggctttgact ttgccggact ggttctgtgg ctggcgggct tcatcctcta ccgcttcctg
     2881 ctctcgtccg gctgggaaag cagcatcggt ctgaccgccc ccgtaatgtc tgccgttgcc
     2941 attgccaccg tactggtgcg ccttttcttt aaaaaaaccc aatctttaca aaggaacccg
     3001 tcatgacccg tatcgccatc ctcggtggcg gcctctcggg aaggctaacc gcattgcagc
     3061 ttgcagaaca aggttatcag attgcacttt tcgacaaagg ctgccgccgg ggcgaacacg
     3121 ccgtcgctta tgttgccgcc gccatgctcg cgcctgcggc ggaagcggtc gaagccacgc
     3181 ctgaagtcat caggctgggc aggcagagca ttccgctttg gcgcggcatc cgatgccgtc
     3241 tgaacacgca cacgatgatg caggaaaacg gcagcctgat tgtgtggcac gggcaggaca
     3301 agccattatc cagcgagttc gtccgccatc tcaaacgcgg cggcgtagcg gatgacgaaa
     3361 tcgtccgttg gcgcgccgac gacatcgccg aacgcgaacc gcaactcggc ggacgttttt
     3421 cagacggcat ctacctgccg accgaaggcc agctcgacgg gcggcaaata ttgtctgcac
     3481 ttgccgacgc tttggacgaa ctgaacgtcc cttgccattg ggaacacgaa tgtgcccccg
     3541 aagacctgca agcccaatac gactggctga tcgactgccg cggctacggc gcaaaaaccg
     3601 cttggaacca acctcccgaa tacaccagca ccttgcgtgg catacgcggc gaagtggcgc
     3661 gggtttacac acccgaaatc acgctcaacc gccccgtgcg cctgctgcac ccgcgttatc
     3721 cgctctacat cgccccgaaa gaaaaccaca tcttcgtcat cggtgcgacc caaatcgaaa
     3781 gcgaaagcca agcccccgtc agcgtgcgtt ccgggctgga actcttatcc gcactctatg
     3841 ccgtccaccc cgctttcggc gaagccgaca tcctcgaaat cgccaccggc ctgcgcccca
     3901 cgctcaacca ccacaacccc gaaatccgtt acagcctcgc ccgacgcctg attgaaatca
     3961 acggcctttt ccgccacggc ttcatgattt cccccgccgt aaccgccgcc gccgtcagat
     4021 tggcagtggc actgtttgac ggaaaagacg cgcccgaacg tgatgaagaa agcggtttgg
     4081 cgtatatccg aagacaagat taaagccgtc tgaaaggaac cccatgacct tcccgccact
     4141 caaatccccg ctcaaattct acgccgtcgt ccccaccgcc gattgggtgg ggcgcatggt
     4201 caaagcaggt gccgacacgg tgcaactgcg ctgcaaggcc ctgcacggcg atgaattgaa
     4261 acgcgaaatc gcccgctgtg tcgccgcctg tcagggcagc catacgcagc ttttcatcaa
     4321 tgaccactgg cgcgaggcaa tcgaagcagg cgcgtacggc gtgcatctcg gacaagaaga
     4381 catggacacc gccgaccttg ccgccatcgc cgccgccggt ttgcgcttgg gtttgagtac
     4441 gcactccgtt gccgaactcg accgcgccct gtccgtacac cctagctaca tcgccagcgg
     4501 cgcgattttc ccgaccacga ccaagcaaat gcccaccgcc ccgcaaggct tggacaaact
     4561 gcgcgaatac gtcaaacagg caggcggcac gcccgtcgtc gccattggcg gcatcgattt
     4621 gaacaacgcc cgagccgtac tcgccaccgg cgtttcctca ctcgccgccg tccgcgccgt
     4681 aaccgaagcg gcaaatcccg aagcggtggt taaagcgttt caggctttgt gggatggata
     4741 aaaccgaaag aagaaaattc aattgccgtg tcggcaaaac ttagcccgtt atcgcaaata
     4801 tgcttaactt taaatgtggc atatcatcaa attccgtcat tcccgcgcaa gcgggaatcc
     4861 gccttaaaac ttgagaaacc atcatttgaa aaacagtttc cgaatttcaa aaatggattc
     4921 ccgcctgc
//
LOCUS       DAWGNT010000139         4883 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.139, whole genome shotgun sequence.
ACCESSION   DAWGNT010000139 DAWGNT010000000
VERSION     DAWGNT010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4883
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.139"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            244..4881
                     /gene="iga"
                     /locus_tag="WHR98_001619"
     CDS             244..4881
                     /gene="iga"
                     /locus_tag="WHR98_001619"
                     /EC_number="3.4.21.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IgA-specific serine endopeptidase
                     autotransporter"
                     /protein_id="HEZ2308278.1"
                     /translation="MKTKRFKINAISLSIFLAYALTPYSEAALVRDDVDYQIFRDFAE
                     NKGKFFVGATDLSVKNKQGQNIGNALSNVPMIDFSVADVNRRTLTVIDPQYAVSVKHV
                     KGDEISYYGHHNGHLDVSNDENEYRSVAQNDYEPNKNWHHGNQGRLEDYNMARLNKFV
                     TEVAPIAPTSAGGGVETYKDKNRFSEFVRVGAGTQFEYNSRYNMTELSRAYRYAIAGT
                     PYQDVNVTSNLNQEGLIGFGDNSKHHSPEKLKEVLSQNALTNYAVLGDSGSPLFAYDK
                     QEKRWVFLGAYDYWAGYQKNSWQEWNIYKKEFADKIKQRDNAGTIKGNGEHHWNITFG
                     TNSKIGSTAVRLAGNEKDANNGQNVTFEDNGTLVLDQNINQGAGGLFFKGDYTVKGIN
                     NDITWLGAGIDVTDGKKVVWQVKNPNGDRLAKIGKGTLEINGTGVNQGQLKVGDGTVI
                     LNQQADADKKVQAFSQVGIVSGRGTLVLNSSNQINPDNLYFGFRGGRLDANGNDLTFE
                     HIRNVDEGARIVNHNTSHASTITLTGKSLITNPNSLSVHSIQNDYDEDDYSYYYRPRR
                     PIPQGKDLYYKNYRYYALKSGGSVNAPMPENGVTENNDWVFMGYTQEEAKKNAMNHKN
                     NQRISGFSGFFGEENGKGHNGALNLNFNGKSAQNRFLLTGGTNLNGKISVTQGNVLLS
                     GRPTPHARDFVNKSSARKDAHFSKNNEVVFEDDWINRTFKAAEIAVNQSASFSSGRNV
                     SNITANITATDNAKVNLGYKNGDEVCVRSDYTGYVTCNTGNLSDKALNSFGATQINGN
                     VNLNQNAALVLGKAALWGQIQGQGNSRVSLNQHSKWHLTGDSQVHNLSLADSHIHLNN
                     ASDAQSANQYHTLKINHLSGNGHFHYLTHLAENLGDKVLVKESASGHYQLHVQDKTGE
                     PNQEGLNLFDASSVQDRSRLSVSLANNHVDLGALRYTIKTENGITRLYNPYAENRRRV
                     KPVPSPATNTASQAQTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQAE
                     AEKVAHQKAEEAKRQQDALARQQAEQERQRLEAERQAAEIAKQKAEAEEAKRRAAEIA
                     EQKAAAEEAKRQAAELARQQEEARKAAELAAKQKAETERKAAEIAEQKAEAEREAAEL
                     AKQKAEEEEGRQAAQSQPKRRNRRAIPPELSSDATTRALPRIARNSNPDDSDYEEIPL
                     DELEDEEVLKAASTSNNQPQNHEESNKDIEAVGLQPRSAQPQPGVAATQADAVSTNTN
                     SALSDAMASTQSILLDTGASLTRHIAQKSRADAEKNSVWMSNTGYGRDYASAQYRRFS
                     SKRTQTQIGIDRSLSENMQIGGVLTYSDSQHTFDQASGKNTFVQANLYGKYYLNDAWY
                     VAGDIGAGSLRSRLQTQQKANFNRTSIQTGLTLGNTLKINQFEIVPSAGIRYSRLSSA
                     DYKLGDDSVKVSSMSVKTLTAGLDFAYRFKVGNLTVKPLLSAAYFANYGKGGVNVGSN
                     SFVYKADNQQQYSAGAALLYRNVTLNVNGSITKGKQLEKQKSGQIKIQIRF"
BASE COUNT         1652 a         1120 c         1057 g         1054 t
ORIGIN      
        1 caaaagcggg aatccaaaaa caaaaagccg cagaaattta acggaagaac cgaaccccga
       61 aaatcggctt cccgccttcg cttgaataac agaacaaagg aagcggaaat aaaaacatcg
      121 ggattctttt tttaaattgg caataaaaca ccaaaattaa tgattcacac aacaaaaaat
      181 agtcaacacc gccaaaccgg cgtaaaatac aaaacattat cacccttaaa acggtaaaac
      241 cttatgaaaa ccaaacgttt taaaattaac gccatatcct tatccatctt tcttgcctat
      301 gcccttacgc catactcaga agcggcattg gtcagagacg atgtcgatta tcaaatattc
      361 cgtgactttg cagaaaacaa aggcaaattt tttgtcggcg caaccgattt atcagtgaaa
      421 aacaaacaag gtcaaaacat cggcaacgca ttatccaacg taccgatgat tgattttagc
      481 gttgcagatg tcaacagacg tacattaacc gtcatcgatc cccagtatgc cgtcagcgtc
      541 aaacatgtaa aaggagacga aatctcttat tacgggcatc acaatgggca cttagatgtt
      601 agcaatgatg aaaacgaata tcgttcagtt gcacaaaatg actacgaacc aaataaaaat
      661 tggcatcacg gtaatcaagg tcgtcttgaa gactacaaca tggcacgcct taataaattc
      721 gtaacagaag tcgcacctat tgcaccaacc agtgcaggcg gcggcgttga aacctataaa
      781 gataaaaacc gtttttctga gtttgtgcga gttggagcag gtacgcaatt tgaatataac
      841 agccgctaca atatgacaga gctttcacga gcttatcgtt atgccattgc aggtacgcct
      901 tatcaagacg tgaatgtcac atcgaatcta aatcaagaag gcttgattgg cttcggtgat
      961 aattcaaaac atcattcccc agaaaaactc aaagaagttt tatctcaaaa cgcattgact
     1021 aactatgctg tgttaggcga tagcggttca ccattatttg cttatgataa acaagaaaaa
     1081 cgctgggtct ttttaggtgc ttacgattat tgggcaggct atcaaaaaaa ctcttggcaa
     1141 gaatggaata tctataaaaa agaatttgca gataaaatca aacaacgcga taacgccggc
     1201 accatcaaag gtaatggaga acatcattgg aacattactt ttggcacaaa cagcaagatt
     1261 ggttctacag cggtaaggct tgccggcaat gaaaaggatg caaacaacgg acagaatgtt
     1321 acctttgaag acaacggcac tttggtattg gatcaaaaca tcaaccaagg cgcgggcggt
     1381 ctgtttttca aaggcgatta cacagtcaaa ggtataaata atgacatcac ttggctaggt
     1441 gcggggattg atgttaccga cggcaaaaaa gtcgtttggc aagtcaaaaa tccgaatggc
     1501 gacagattgg caaaaatcgg caaaggcaca ttagaaataa acggcacagg cgttaaccaa
     1561 gggcaattaa aagtcggcga cggtacggtt attctgaatc aacaagccga tgccgacaaa
     1621 aaagtccagg ctttctccca agtcggcatt gtcagcggac gcggtacatt ggtattaaat
     1681 agttcaaatc agattaatcc cgataaccta tatttcggtt tccgtggcgg tcgtttggat
     1741 gccaatggca atgacttgac ttttgaacac atccgcaacg tggatgaagg cgcgcgcatt
     1801 gtcaaccaca acacaagcca cgcctccaca atcacgctaa cgggtaaatc tttaattacc
     1861 aatccgaaca gcctttcggt acatagcata caaaatgact atgacgaaga tgattatagt
     1921 tattactacc gaccaaggcg cccgattccg caaggcaaag acctttatta caaaaactat
     1981 cgttattacg ccctaaaatc cggcggcagc gtgaacgcac cgatgcccga gaacggtgta
     2041 acagaaaata acgactgggt ctttatggga tatacgcaag aagaagccaa gaaaaacgcg
     2101 atgaaccaca aaaacaatca gcgtattagc ggttttagcg gtttctttgg cgaagaaaac
     2161 ggaaaaggac ataacggtgc attaaacctt aatttcaacg gcaaaagcgc gcaaaaccgt
     2221 ttcttgttaa caggcggcac taatttaaac ggaaaaataa gcgtaactca aggcaatgtc
     2281 ttgttatcag gtcgtccaac accacacgca agagattttg tgaacaaatc ttcagcccga
     2341 aaagacgcac atttctccaa aaacaatgaa gtcgtatttg aagacgactg gataaaccgc
     2401 acattcaaag ccgcagaaat tgcggttaat caatccgcat cattctcttc cggtagaaat
     2461 gtatccaaca ttaccgccaa catcaccgcg acagacaacg ccaaagtaaa tttgggttac
     2521 aaaaacggcg atgaggtttg cgtgcgctcg gactataccg gttatgttac ctgcaacaca
     2581 ggcaacttat ccgataaggc tttaaacagc tttggagcga cacagattaa cggcaatgtg
     2641 aatctgaacc agaatgcggc attggtcttg ggcaaggctg cattatgggg gcaaattcaa
     2701 gggcaaggaa acagccgtgt cagcctaaac caacatagca aatggcattt gactggcgac
     2761 agccaagtac acaatctgtc attggcggat agccatattc atttgaacaa tgcctccgat
     2821 gcgcaaagtg caaatcaata ccacacgctc aaaatcaatc atttatccgg taacgggcat
     2881 tttcattatc tgacgcactt ggcggaaaat cttggggata aagtgcttgt gaaggaatcc
     2941 gcatccggtc attatcagct ccatgttcaa gataaaacag gcgaacccaa tcaggaaggg
     3001 ctgaatctct ttgatgcatc atccgtacaa gaccgctccc gcctttctgt ttccttggcg
     3061 aataaccatg tagatttagg cgcattgcgt tatacaatca aaacagaaaa cggtattacc
     3121 cgattgtaca atccttatgc cgagaaccgc cgccgagtca aaccggtccc gtctcctgcc
     3181 acaaacacgg cttctcaagc acaaacggac agtgcacaaa ttgccaagcc tcaaaatatc
     3241 gtcgtcgcac cgcctagccc gcaggcaaat caagccgaag aagcaaaacg ccaacaagca
     3301 aaagcggagc aagtgaagcg tcagcaagca gaggcagaaa aagtcgcaca tcaaaaggct
     3361 gaagaagcga aacgtcagca agatgccctt gcccgccaac aagcagagca agaacgccaa
     3421 cgattggaag ccgaacgcca agctgccgaa attgccaaac aaaaagcaga agccgaagaa
     3481 gcgaaacgcc gagccgctga aattgccgag caaaaagcag ctgccgaaga agcaaaacgc
     3541 caagctgccg aacttgcacg ccaacaagaa gaagcacgaa aagctgcaga gttggctgct
     3601 aagcaaaaag cggaaactga acgcaaagca gcagaaattg ccgagcaaaa agcggaagcc
     3661 gaacgtgaag ccgccgaact tgccaagcaa aaggcggaag aagaagaagg tcgccaagca
     3721 gcacaatctc aacccaaacg tcgtaaccgc agggctatac caccggaact gtcatctgat
     3781 gcaacaaccc gagctttgcc taggatagcg agaaattcaa atcctgatga cagcgattat
     3841 gaagaaatcc cattggatga attagaagat gaggaagtat taaaagctgc ttccacatca
     3901 aataatcagc ctcaaaatca tgaggaatcc aataaggata ttgaggctgt cgggttgcaa
     3961 ccgagatctg cccaacctca acctggggtg gcggcaacac aagccgatgc agtcagcacc
     4021 aataccaact cggctttatc tgacgcaatg gcaagcacgc aatctatctt gttggataca
     4081 ggtgcttcat taacacggca cattgcacaa aaatcacgcg ctgatgccga aaaaaacagt
     4141 gtttggatgt cgaacaccgg ttatggccgt gattatgctt ccgcacaata tcgccggttt
     4201 agttcgaaac gcacgcaaac acaaatcggc attgaccgca gcttgtccga aaatatgcag
     4261 ataggcggcg tattgactta ctctgacagt cagcatactt ttgatcaggc gagcggcaaa
     4321 aatacttttg tgcaagccaa cctttatggt aagtattatt taaatgatgc ttggtatgta
     4381 gccggcgata ttggtgcagg cagcttgaga agccggttac aaacgcagca aaaagcaaac
     4441 tttaaccgaa caagcatcca aaccggcctt actttgggca atacgctgaa aatcaatcaa
     4501 ttcgagattg tccccagtgc ggggatccgt tacagccgcc tgtcatctgc agattacaag
     4561 ttgggtgacg acagtgttaa agtaagttct atgtcagtga aaacactgac ggccggactg
     4621 gattttgctt atcggtttaa agtcggcaac cttaccgtaa aacccttgtt atctgcagct
     4681 tactttgcca attatggcaa aggcggcgtg aatgtgggca gtaattcctt cgtctataaa
     4741 gcagataatc aacagcaata ttcagcaggt gccgcgttac tgtaccgtaa tgttacatta
     4801 aacgtaaatg gcagtattac aaaaggaaaa caattggaaa aacaaaaatc cggacaaatt
     4861 aaaatacaga ttcgtttcta aaa
//
LOCUS       DAWGNT010000140         4857 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.140, whole genome shotgun sequence.
ACCESSION   DAWGNT010000140 DAWGNT010000000
VERSION     DAWGNT010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4857
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.140"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(72..554)
                     /locus_tag="WHR98_001620"
     CDS             complement(72..554)
                     /locus_tag="WHR98_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEZ2308279.1"
                     /translation="MTQQRQLPSHELIMSELMMPDTANFSGNVHGGELLLLLDQVAYS
                     CASRYSGNYCVTLSVDKVLFKEPIHIGDLVTFYAAVNYTGRTSMEIGIRVEAQNIRTG
                     EIRHTNSCYFTMVAVKDGKPVPVPPLEILTDRQRCRYEKAKKRRDISLQASEDMSCGC
                     "
     gene            complement(707..868)
                     /locus_tag="WHR98_001621"
     CDS             complement(707..868)
                     /locus_tag="WHR98_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308280.1"
                     /translation="MSGQPEKHHTSPIEDERKNPVYRMGRAVAGFMLVVWVAVLALVF
                     FLVFRFWLS"
     gene            complement(942..1403)
                     /gene="recX"
                     /locus_tag="WHR98_001622"
     CDS             complement(942..1403)
                     /gene="recX"
                     /locus_tag="WHR98_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HEZ2308281.1"
                     /translation="MKPQKSLRARAMDILSRQEVSRIGLKRKLAPHAESEEELENVLN
                     EFAERNWQSDLRYAEAYIRSKSRKHGSLRLKQALAQQGIDEETSRNLLPDRSSEKQTA
                     IDVLRKKFKHPAADLKEKQKQARFLAYRGFDADTVQTALKHAWDENWEDGC"
     gene            complement(1478..2188)
                     /locus_tag="WHR98_001623"
     CDS             complement(1478..2188)
                     /locus_tag="WHR98_001623"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HEZ2308282.1"
                     /translation="MNAAIEHVQAVAFDLDGTLCDSVPDLAAAAEAMLEQLGMKPLPA
                     KVVESYVGDGIGKLVHRVLTNDRDREADSELWEKGFVSYMKYYRDHLSVFTRPYPETE
                     AGLALLKSLGIPLAVITNKNEILAVELLKQLGLADYFSLILGGDSLPEKKPSPLPLRH
                     AAEVLGIDVANMVMVGDSRNDIIAAKAAGCLSVGVTFGYGDMTLLSQDDATRPDWIIG
                     SLPEIYENLQPQKNKDEE"
     gene            2595..3860
                     /locus_tag="WHR98_001624"
     CDS             2595..3860
                     /locus_tag="WHR98_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003420866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HEZ2308283.1"
                     /translation="MSEALAKETLNPFEIARKQVKTACDRLKTDPAVYEILKSPTRVL
                     EVNFPVKLDDGTVKTFTGYRSQHNNAVGPYKGGVRFHPSVNLDEVKALSIWMTIKCCV
                     AGIPYGGGKGGITLDPRDYSEAELERIARAYAEAIAPLIGEKIDIPAPDVNTNGKIMS
                     WMVDAYENVVKHSAPGVFTGKPVEFGGSLARTEATGYGVNLAAVQALEKLGKDVKGAT
                     YAIQGFGNVGHHTGYYAHQSGAKVVAVSTVDVAIYNENGLDMEALFKEFQEKGFITNE
                     AGYGKEITNAELLALDVDVLAPCALENQLTSENAGKVRATIVVEGANGPTTPEADVIL
                     RQNGVLVVPDILANCGGVVVSYFEWVQNLQGYYWEFDEVQEKETVVLRRAFRDIWNLA
                     QEYDVDLRTASYMMSIRRVEKAMKLRGWY"
     gene            complement(3918..4724)
                     /locus_tag="WHR98_001625"
     CDS             complement(3918..4724)
                     /locus_tag="WHR98_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4198 domain-containing protein"
                     /protein_id="HEZ2308284.1"
                     /translation="MKKTLTLLAVSALFATSAHAHRVWVETAHTHGGEYLKADLGYGE
                     FPELEPIAKDRLHIFSKPMQLVTEKGKENMIQRGTYNYQYRSNRPVKDGSYLVIAEYQ
                     PTFWSKNKAGWKQAGIKEMPDASYCEQTRMFGKNIVNVGHESADTAIITKPVGQNLEI
                     VPLDNPANIHVGERFKVRVLFRGEPLPNATVTATFDGFDTSDRSKTHKTEAQAFSDST
                     DDKGEVDIIPLRQGFWKANVEHKADFPDQSVCQKQANYSTLTFQIGHSHH"
BASE COUNT         1043 a         1102 c         1436 g         1276 t
ORIGIN      
        1 cttgatttca tccgtttgca atggaaacgg atggcgcgat gtgcctgtct ttcagacggc
       61 atagtccgcc gtcagcagcc gcaggacatg tcttcagagg cttgcaggct gatgtctctg
      121 cgttttttgg ctttttcgta gcggcagcgt tggcggtcgg tcaggatttc cagcggaggg
      181 acagggacgg gtttgccgtc tttgaccgca accatcgtga agtagcagct gttggtgtgg
      241 cggatttcgc cggtgcggat gttttgtgct tcgacacgga tgccgatttc catcgaggtg
      301 cgtcccgtgt agttgacagc ggcgtaaaag gtaaccaaat cgccgatgtg gatgggttct
      361 ttaaacagga ctttgtcaac cgacagggta acgcaataat tgccgctgta acggctggcg
      421 caggaatagg cgacttggtc gagcaggagc aggagttcgc cgccgtgtac gttgccgctg
      481 aaattggcgg tgtccggcat catcagttcg gacataatga gttcgtggga aggcagttgg
      541 cgttgttgtg tcatggtgta cctgttttaa gaaagggtgt tttgaaatgg gtgcggggaa
      601 attctaggga atggggaagt ggaattcaag ctaaaaaaag ctatgatggg atagtctgcc
      661 gaaatggacc gccgatgccg tctgaagcct tcagacggca ttttgtttag gaaagccaaa
      721 aacggaagac caggaaaaac acgagtgcca atacggcgac ccaaacgacg agcatgaatc
      781 cggcaactgc ccgtcccata cggtaaaccg ggtttttgcg ttcgtcttcg atgggggagg
      841 tgtggtgttt ttcgggttgt ccggacattt tgttctcaat cggaaaagtt ggaaacgggc
      901 gtaaggttat gttgccgtgc aaaaagattc aagaaggaag gtcagcagcc gtcttcccaa
      961 ttttcgtccc aagcgtgttt caatgccgtc tgaacggtat cggcatcgaa tccgcgatag
     1021 gcgaggaaac gcgcctgttt ttgtttttct ttaaggtcgg cggcggggtg tttgaatttt
     1081 ttacgcaaca cgtctatggc ggtctgtttt tcgcttgagc ggtcgggaag caggttgcgg
     1141 ctggtttctt catctatgcc ctgttgcgcc aaagcctgtt tcagcctcaa tgaaccgtgt
     1201 ttgcggcttt tgctgcggat ataggcttcg gcatagcgca aatccgactg ccagttgcgt
     1261 tcggcaaatt cgtttaacac gttttccaac tcttcttcgc tttcggcgtg cggtgcaagt
     1321 ttgcgtttca gaccgatgcg gctgacttct tggcgcgaga ggatgtccat cgcgcgggcg
     1381 cgtagggatt tttgcggttt catggcggcg gtttcggcgt ggggcaggtt tcagacggca
     1441 tgggaaacgg attccgatgc cgtctgaaca gattgtttta ttcttcgtct ttatttttct
     1501 gcggttgcag gttttcgtaa atttcgggca gcgagccgat aatccagtcg gggcgggtcg
     1561 catcgtcttg cgagagcagc gtcatatcgc cgtaaccgaa ggtaacgccg acgctcaggc
     1621 agccggcggc tttggcggcg atgatgtcgt tgcgcgagtc gccgaccata accatgtttg
     1681 caacatcgat acccaaaact tcggcggcat gccgcagcgg cagggggctg ggttttttct
     1741 cgggcaggct gtcgccgccg agtatcaggc tgaagtagtc ggcaagtccg agctgtttca
     1801 acagttcgac ggcaaggatt tcgtttttgt tggtaatgac tgccagcggg atgcccaaag
     1861 atttgagcaa tgccagcccg gcttcggttt cgggataggg gcgggtgaag acgctcaaat
     1921 ggtcgcggta gtatttcata taggatacga aacctttttc ccacagttcg gaatcggctt
     1981 cgcggtcgcg gtcgttggtg aggacgcggt gaaccagttt gccgatgccg tcgcccacat
     2041 agctttcgac cacttttgca ggcagcggtt tcataccgag ttgctccaac atcgcttctg
     2101 cggcggcggc aaggtcgggg acggaatcgc acagtgtgcc gtccaaatcg aaggcgacgg
     2161 cttggacgtg ttcgatggct gcattcataa tctgatttcc tgtcgggttg aaagggttta
     2221 ttttaacatc gtttgcacag ggcttctaat gtatagattg ttaacaatcg caacaggttt
     2281 tgcaggcggt gttttcggat ttcggggcgg aatcgggcaa gggtttgaaa tcccagcgat
     2341 gttccaatta aatttttaaa aaataaaagg atgcctatat ctttatttaa tttgacattt
     2401 atttttcgga cgcgcgcgct gctttttcag gcgaagtccg ggctgattcc gtgcggcttg
     2461 aaaaataaaa tcatatatag attaatcaaa tcgggcttat gccgactaca cgctattaca
     2521 ttttgtcggg aaattggtta tagtaatgag cgaaatgcac gcccctgaaa atctttttgt
     2581 gaaaaggaag caaaatgtct gaagcccttg caaaagaaac cctcaatccg tttgaaatcg
     2641 cgcgcaaaca ggtcaaaacc gcctgcgacc ggctgaaaac cgatccggcc gtttatgaaa
     2701 tcctgaagag tccgacccgc gtgttggaag tcaatttccc cgtcaaactc gacgacggca
     2761 cggtcaaaac cttcacgggc taccgttcgc aacacaacaa cgccgtcggc ccctataaag
     2821 gcggcgtgcg cttccatccc agtgtgaatt tggacgaagt caaagccctg tcaatttgga
     2881 tgaccatcaa atgctgcgtt gcgggtattc cttacggcgg cggcaaaggc ggcattacct
     2941 tggatccgcg cgattattcc gaggcggaac tggaacgcat cgcccgcgct tatgctgaag
     3001 cgattgcccc gctgattggt gaaaaaatcg atattcccgc ccccgatgtg aacaccaacg
     3061 gcaaaattat gtcgtggatg gtggatgcct atgaaaacgt ggtgaaacat tccgcgccgg
     3121 gcgtatttac cggcaaaccg gtcgagttcg gcggctcttt ggcgcgtacc gaagccaccg
     3181 gttacggcgt gaacctcgcc gccgtccaag ccttggaaaa actgggcaag gacgtgaagg
     3241 gtgccactta cgccattcaa ggtttcggta atgtgggtca ccacacaggt tattacgcgc
     3301 atcaatccgg cgcgaaagtt gttgcggttt ctactgttga cgttgccatt tacaacgaaa
     3361 acggtttgga tatggaagcc ctgttcaaag agttccaaga aaaaggcttc atcaccaacg
     3421 aagccggtta cggcaaggaa attaccaacg ccgaactttt ggctttggat gtggacgtac
     3481 tcgccccttg cgcgctggaa aaccaactga cttctgaaaa tgccggtaaa gtccgcgcga
     3541 caatcgtggt cgaaggcgcg aacggcccga ctacgcccga agccgacgtt atcctgcgtc
     3601 aaaacggcgt attggtcgtg cccgatattt tggcgaactg cggcggcgtg gtggtatctt
     3661 attttgaatg ggtacaaaat ctgcaaggct attattggga gtttgacgaa gttcaggaaa
     3721 aagaaaccgt cgtcctgcgc cgtgcgttcc gcgatatatg gaacttggcg caagagtatg
     3781 atgtcgattt gcgaaccgcg tcttacatga tgagtatccg ccgtgttgaa aaagcgatga
     3841 aactgcgcgg ttggtattga tgtttgaaca aaaaatgccg tctgaagcct tcagacggca
     3901 tttttgtgcg ggcgggatta atggtgcgaa tggccgattt ggaaggttaa agtcgagtag
     3961 ttcgcctgtt tttggcacac gctttgatcg gggaagtcgg ctttgtgttc gacattggct
     4021 ttccagaagc cttggcgcaa ggggatgatg tccacttcgc ctttgtcgtc tgtgctgtcg
     4081 gagaaagcct gtgcttcggt tttgtgcgtt ttgctgcggt cgctggtgtc gaagccgtca
     4141 aaggtggcgg taacggtggc attgggcagc ggttcgccac ggaacagaac gcggactttg
     4201 aagcgttcgc ctacgtgaat gttggcggga ttgtccagcg ggacgatttc caagttttgt
     4261 ccgaccggtt tggtgatgat ggcggtgtcc gcgctttcgt gtccgacgtt gacgatgttt
     4321 ttgccgaaca ttcgggtttg ttcgcaatag cttgcgtcag gcatttcttt gatgcccgcc
     4381 tgtttccagc ctgctttgtt ttttgaccag aaagtaggct gatattcggc gatgacgagg
     4441 taactgccgt ccttaacggg acggttgctt cggtactggt agttgtatgt gccgcgttga
     4501 atcatgtttt ccttgccttt ttcggtaacc agctgcatcg gtttgctgaa gatgtgcagg
     4561 cggtctttgg cgatgggttc gagttcggga aattcgccgt agcccaagtc ggctttaagg
     4621 tattcgccgc cgtgcgtgtg ggcggtttcg acccagacgc ggtgggcgtg ggcggatgtg
     4681 gcaaataggg cggaaacggc gagcagtgtc aatgttttct tcatggtgca gcctttgtct
     4741 cgtgtgggtt aaagattttg ttatgttata acaaaatagg tatcgtgtga agacggattt
     4801 gctgtctgaa aactgtcttt ttgtatagtg gattaacaaa aaccagtacg gcgttgc
//
LOCUS       DAWGNT010000141         4776 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.141, whole genome shotgun sequence.
ACCESSION   DAWGNT010000141 DAWGNT010000000
VERSION     DAWGNT010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4776
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.141"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            214..993
                     /gene="pgeF"
                     /locus_tag="WHR98_001626"
     CDS             214..993
                     /gene="pgeF"
                     /locus_tag="WHR98_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HEZ2308285.1"
                     /translation="MKTITETLNLAPKGKNFLTADWPAPANVKTLITTRNGGVSQGAY
                     QSLNLGTHVGDNPEAVRRNREIVQQQVGLPVAYLNQIHSTVVVNAAEALGGTPDADAS
                     VDDTGKVACAVMTADCLPVLFCDRAGTAVAAAHAGWRGLAGGVLQNTIAAMKVPPVEM
                     MAYLGPAISADAFEVGQDVFDAFCTPMPEAAAAFEGIGGGKFLADLYALARLILKREG
                     VGGVYGGTHCTVLERDTFFSYRRDGATGRMASLIWLDGNAV"
     gene            1045..1524
                     /locus_tag="WHR98_001627"
     CDS             1045..1524
                     /locus_tag="WHR98_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308286.1"
                     /translation="MNKLFLTAAVLMLGACGFHLKGADGISPPLTYRSWHIEGGQALQ
                     FPLETALYQASGRVDDAAGAQMTLRIDSVSQNKETYTVTRAAVINEYLLILTVEAQVL
                     KRGEPVGKPMTVSVRRVLAYADNEILGKQEEEAALWAEMRQDAAEQIVRRLTFLKAE"
     gene            1526..2524
                     /locus_tag="WHR98_001628"
     CDS             1526..2524
                     /locus_tag="WHR98_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEZ2308287.1"
                     /translation="MAAHIGHIDTDAPLKPLYVIHGEEELLRIEALDALRAAAKKQGY
                     LNREVYTADNAFDWNELLQTAGSAGLFADLKLLELHIPNGKPGKTGGEALQDFAARLP
                     EDTVTLVLLPKLEKTQLQSKWFAALAAKGEVWEAKPVGAAALPQWIRGRLDKIGLGIG
                     ADALALFAERVEGNLLAARQEIDKLGLLYPKGHTVNIDEAQTAVANVARFDAFQLAGA
                     WMKGDVLRVCRLLDGLREEGEEPVLLLWAVAEDVRTLIRLAAALKQGQSVQSVRNSLR
                     LWGEKQTLAPLAVKRISVVRLLDALKTCAQIDRIIKGAEDGDAWTVFKRLVVSLAE"
     gene            2645..3064
                     /locus_tag="WHR98_001629"
     CDS             2645..3064
                     /locus_tag="WHR98_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308288.1"
                     /translation="MDNKTKLRLGGLILLTTAVLSLIIVLIVDSWPLAILLAAVIVAA
                     AAGGFVWTSRRQQRQFIERLKKFDIDPEKGRINEANLRRMYHSGGQHQKDAITLICLS
                     QKCSVDEAHAMFKKRPTRQEINQMAAKQSRGQKRPHR"
     gene            3140..3655
                     /locus_tag="WHR98_001630"
     CDS             3140..3655
                     /locus_tag="WHR98_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEZ2308289.1"
                     /translation="MMTLKTAPLKRRFAAMLYEMLLVGAATCLAALFAGIAAIFLNPV
                     SIAVSALVTSILIMGSWWLYFRANWHGQGQTLAMRTWKIGLCDLNGIQPSLHLLRLRF
                     IWACIFIVFIPMLAYAGLRHFLGIPPKGAAGAALIWLILPWGFALLNPDRQFLYDFLA
                     GTRLVAVKGKP"
     gene            complement(3739..4623)
                     /locus_tag="WHR98_001631"
     CDS             complement(3739..4623)
                     /locus_tag="WHR98_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HEZ2308290.1"
                     /translation="MSSGNIHIHSMTGFANAAAECGSKRINLDIRAVNHRFLDIQIRM
                     PDDLRYLESGIREKISSHIARGKVECKIQIQDTENSRQSLELNSDLVNQLAEINKNLR
                     KHHDLAKLGVADILRFPGVLASQRENTEELAKSITELTEKALKDFTAARRREGKKLGE
                     HLLQRLESMEEIIDALSELFPTLLETHKEKIRARLVEAVGDINNDRLQQEFALFIQKS
                     DIDEEFSRLRTHIDEVRRIVTEHKGSSGKRLDFLMQELNREANTLGSKSIAAECTQAS
                     VELKVLIEQMREQVQNIE"
BASE COUNT         1065 a         1258 c         1332 g         1121 t
ORIGIN      
        1 gccgtactgg tttttgttaa tccactatat aaagctcgga gaaggtatat aaggacatca
       61 ttcctgcacc ggcaagaatc cgaacccgaa cgtttgaaaa caatcccgaa tctccgaatt
      121 cccgcctgtg cgggaatgac gaaaaaacaa gcatccattt gccccgaagg cagttaatca
      181 accctttccg ccacacacct attccaatat ccaatgaaaa ccatcacaga aaccctaaat
      241 ctcgccccga aaggcaaaaa cttcctgacc gccgattggc ccgcgcccgc caatgtgaaa
      301 accctgatta ccacgcgcaa cggcggcgtg agccaaggtg cgtatcagag tttgaacctc
      361 ggtacgcacg tcggcgacaa tcccgaagcc gtgcgccgca accgcgaaat cgtgcaacag
      421 caggtcggat tgcccgttgc ctacctcaat caaatccaca gtaccgtcgt cgtcaatgct
      481 gccgaagctt tgggaggcac acccgatgcg gacgcttccg tagacgacac gggcaaagtt
      541 gcctgtgctg tcatgactgc cgactgtctg cccgttctat tttgcgacag ggcgggtacg
      601 gcggttgccg ccgcacacgc gggctggcgc ggtttggcgg gcggcgtatt gcaaaacacc
      661 attgccgcga tgaaggttcc acccgtcgaa atgatggcgt atctcggtcc cgccatcagt
      721 gcggatgcgt ttgaagtcgg acaggatgtg tttgatgcgt tctgcacgcc catgcccgaa
      781 gccgccgccg catttgaagg cataggcggc ggcaaattcc ttgccgacct ttacgcgctc
      841 gcccgcctga ttctgaagcg cgaaggcgtg ggcggcgtat atggcggcac gcattgtacg
      901 gttttggaac gggatacttt cttttcctac cgccgcgacg gagcgacagg gcgtatggcg
      961 agcctgattt ggctggacgg caatgccgtc tgaacacgcc gctgatataa tctaccgact
     1021 ttgtgctttt gagaaaggca agccatgaac aaactgtttc ttactgccgc agtgctgatg
     1081 ctgggcgcgt gcggtttcca cctgaaaggt gcagacggca tttctccgcc gctgacctac
     1141 cggagctggc acatcgaagg cggacaggca ttgcagtttc ctttggaaac cgcgctgtat
     1201 caggcttcgg gcagggtgga cgatgctgcc ggcgcgcaga tgaccctgcg tatagacagc
     1261 gtttcccaaa acaaggaaac ctacaccgtt acccgtgcgg cagttatcaa cgaatatctt
     1321 ttaatcttga cggttgaagc gcaggtattg aaacgcggcg agccggtcgg caaaccgatg
     1381 accgtgtccg tccgccgcgt ccttgcttat gccgacaacg agatcttggg caaacaggaa
     1441 gaggaagcgg cattgtgggc ggaaatgcgg caggatgccg ccgaacagat tgtccgccgc
     1501 ctgacctttc tgaaggcgga atgacgtggc ggcacatatc ggacacattg atacggacgc
     1561 gcctttgaaa cccctgtacg tcatccacgg cgaggaagaa ctgttgcgta tcgaggcatt
     1621 ggacgcattg agggcggcgg cgaagaaaca aggttacctt aatcgggaag tttatacggc
     1681 agacaatgcc ttcgattgga acgaactgtt gcaaaccgca ggcagtgcgg gtctgtttgc
     1741 cgatttgaag ctgttggaac tgcatatccc caacggaaaa cccggcaaaa ccggcggcga
     1801 ggcgttgcag gattttgccg cccgcctgcc ggaagatacg gtaacgctgg ttttgctgcc
     1861 caaactggag aaaacccagc tccagtccaa atggtttgcc gcattggcgg caaaggggga
     1921 agtgtgggaa gccaaaccgg tcggcgcggc ggctttgccc caatggatac gcggacggct
     1981 ggacaaaatc ggtttgggta tcggggcaga cgcattggca ctgtttgccg agcgcgtgga
     2041 aggcaatctg ttggcggcgc gtcaggaaat cgacaagctc gggctgctgt atccgaaagg
     2101 gcataccgtc aatatcgatg aggcgcaaac cgccgttgcc aacgtcgccc gcttcgacgc
     2161 gttccaactg gcaggcgcgt ggatgaaggg cgatgtcctg cgcgtatgca ggcttttgga
     2221 cggattgcgg gaagagggcg aagaaccggt gctgttgctg tgggcggttg ccgaagacgt
     2281 gcggacgctg atccggcttg ctgccgccct gaagcagggg cagagtgtcc aatccgtacg
     2341 caacagtctc agactttggg gtgaaaagca gacgctcgca ccgcttgcag tcaagcggat
     2401 ttccgtcgtc cgcctgcttg acgcgctcaa aacctgcgcc caaatcgacc gaatcatcaa
     2461 aggtgcggaa gacggcgacg catggacggt attcaaacgg cttgtcgtgt cgctggcgga
     2521 ataaagcggt aatccccaaa atccgaaaat actgtaaaat accgttaatc ctgaaaagta
     2581 ttcaccaatc cgtccgaaaa catttcagac ggcacgacca cctcaataaa ggaacattaa
     2641 ccctatggac aataagacca aactgcgctt gggcggcctg attttactga ctaccgccgt
     2701 tttaagcctc attatcgtat tgattgtcga ctcctggccg cttgccatcc tgcttgccgc
     2761 cgtcatcgtc gccgccgctg cgggcggttt tgtttggaca tcccgccgac agcaacgcca
     2821 gtttatcgaa cgcctgaaaa aattcgacat cgatcccgaa aaaggcagaa tcaacgaggc
     2881 aaacctgcgc cgtatgtacc acagcggcgg acaacaccag aaagatgcga ttaccctgat
     2941 ctgcctgtcg caaaaatgtt cggtggacga ggcgcacgct atgttcaaaa aacgcccgac
     3001 acgtcaggaa atcaatcaaa tggcggcaaa acagtcgcgc ggtcagaaac gtccgcaccg
     3061 ttaaccgccg caaggcatct ttgcataaat gccgtctgaa gcctgttggc gtttcagacg
     3121 gcatattctg attgaaaaga tgatgacact gaaaaccgcc ccgctcaaac gccgctttgc
     3181 cgccatgctg tacgaaatgc tgctggtcgg tgcggcaacc tgtttggcag cattgtttgc
     3241 cggtattgcc gccatttttc tgaatcccgt ttctatcgcg gtttctgcat tggtaacgag
     3301 tatcctgata atgggatcat ggtggcttta ttttcgcgcc aactggcacg gtcaggggca
     3361 gaccttggcg atgaggacat ggaaaatcgg cttgtgcgac cttaacggca tacagccgtc
     3421 tttgcacctg ctgcgcctgc gctttatttg ggcgtgcata ttcatcgtct tcattcctat
     3481 gcttgcttat gccggattgc gccacttcct cggcattccg cccaagggcg cggccggcgc
     3541 ggcattgatt tggctgattt taccgtgggg gttcgcactg ctgaatcccg atcggcagtt
     3601 tctgtatgat tttcttgcag gaacaagatt agtggcggtc aaaggaaagc cttaagcctt
     3661 tataccgcaa aggtttcaac ctgaaaaaat gccgtctgaa agggctttca gacggcattt
     3721 ggttatcggg gaaaccgatt attcgatatt ctgcacttgt tcccgcatct gctcgattaa
     3781 gactttcagt tcgaccgagg cttgggtgca ttcggcggca atggatttgc tgcccaaagt
     3841 gttggcttcg cggtttaatt cctgcatcag gaagtccagc cgtttgccgc tgctgccttt
     3901 gtgttcggta acgatgcggc gtacttcgtc gatatgcgtg cgcaggcggc tgaactcttc
     3961 gtcgatgtcg gatttttgaa taaagagggc aaattcctgt tgcagcctgt cattattgat
     4021 gtcgccgact gcttcgacga ggcgggcgcg gattttttct ttatgtgttt ccagcagggt
     4081 aggaaagagt tcgctcaatg catctatgat ttcttccatg ctttcgaggc gttgtaacag
     4141 gtgctcgccc aattttttcc cttcgcgccg gcgtgcggca gtaaagtctt ttaacgcttt
     4201 ttcggtcagt tcggtaatgc tttttgccaa ttcctccgta ttttcccttt ggcttgccaa
     4261 tacgccgggg aaacgcagga tgtcggcaac gcccagtttt gccaaatcgt gatgcttgcg
     4321 gaggtttttg ttgatttcgg caagctggtt caccaaatcc gagttgagtt ccaaggactg
     4381 tctgctgttt tccgtatctt gaatttggat tttgcattcg actttgccgc gcgcgatatg
     4441 ggatgaaatt ttctcgcgga taccgctttc caaatagcgc aaatcatccg gcatcctgat
     4501 ttgaatgtcc aaaaagcggt ggttgacggc gcggatgtcg aggttgatgc gtttgctgcc
     4561 gcactctgcc gccgcgttgg caaagccggt catgctgtgg atgtggatat ttccgctgct
     4621 catgtcgttc tccgaagccc gttaaaatgg aatcaatata tcacatctgt atggcggcaa
     4681 gcgttttcgg gtgtgaaaaa ttgaaggttt tgcagcggca gattggaatc acgctctttt
     4741 gttgctgcaa ggaagggaaa tgtatagtgg attaac
//
LOCUS       DAWGNT010000142         4705 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.142, whole genome shotgun sequence.
ACCESSION   DAWGNT010000142 DAWGNT010000000
VERSION     DAWGNT010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4705
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.142"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(192..437)
                     /locus_tag="WHR98_001632"
     CDS             complement(192..437)
                     /locus_tag="WHR98_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308291.1"
                     /translation="MLKSIELNSHIRNRLAEYLKGRGMDFQTAMQEEKGNKEIAAIVH
                     SGLPTLVRKLYSEQKMQKFFWEKRDLIADYISRRMQG"
     gene            549..977
                     /locus_tag="WHR98_001633"
     CDS             549..977
                     /locus_tag="WHR98_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HEZ2308292.1"
                     /translation="MMFSWFKLFHLFFVISWFAGLFYLPRIFVNMAMIDVPRGNPEYV
                     RLSGMAVRLYRFMSPLGFGAVVFGAAIPFAAGWWGSGWVHVKLCLGLMLLAYQLYCGV
                     LLRRFQDYSNAFSHRWYRVFNEIPVLLMVAALYLVVFKPF"
     gene            989..1465
                     /locus_tag="WHR98_001634"
     CDS             989..1465
                     /locus_tag="WHR98_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEZ2308293.1"
                     /translation="MPIEIERRFLIGNDNWRQYADEPLLLRQGYLSVEKERTVRVRIA
                     GKQAWLTLKGYISEISRSEFEYEIPLADAEKMMETMCPFKMEKWRYPVRWGGSLFEID
                     VFLGDNAPLVVAEIELPDENADFDRPDWLGREITADGMFTNAYLSRHPFSSWKNAV"
     gene            complement(1815..2303)
                     /locus_tag="WHR98_001635"
     CDS             complement(1815..2303)
                     /locus_tag="WHR98_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEZ2308294.1"
                     /translation="MLKITLIAACAENLCIGAGNAMPWHIPEDFAFFKAYTLGKPVIM
                     GRKTWESLPVKPLPGRRNIVISRQADYCAAGAETAASLEAALALCAGAEEAVIMGGAQ
                     IYGQAMPLATDLRITEVDLSVEGDAFFPAIDRTHWKEAERTERRVSSKGTRYAFVHYL
                     RY"
     gene            complement(2371..3426)
                     /gene="aroG"
                     /locus_tag="WHR98_001636"
     CDS             complement(2371..3426)
                     /gene="aroG"
                     /locus_tag="WHR98_001636"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HEZ2308295.1"
                     /translation="MTHHYPTDDIKIKEVKELLPPIAHLYELPISKEASGLVHRTRQE
                     ISDLVHGRDKRLLVIIGPCSIHDPKAALEYAERLLKLRKQYENELLIVMRVYFEKPRT
                     TVGWKGLINDPHLDGTFDINFGLRQARSLLLSLNNMGMPASTEFLDMITPQYYADLIS
                     WGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLKIAIDAIGAASHSHHFLSVTKAG
                     HSAIVHTGGNPDCHVILRGGKEPNYDAGHVSEAAEQLRAAGVTDKLMIDCSHANSRKD
                     YTRQMEVAQDIAAQLEQDGSNIMGVMVESHLVEGRQDKPEVYGKSITDACIGWGATEE
                     LLALLAGANKKRMARAG"
     gene            complement(3588..3815)
                     /locus_tag="WHR98_001637"
     CDS             complement(3588..3815)
                     /locus_tag="WHR98_001637"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308296.1"
                     /translation="MGNTRIPIKSFFKQLVLFVFNIFLAYEILPDVQAESAAGCPVPD
                     CRGNGKTDVPCGFVRMNGGYCFYQSVSFSLE"
     gene            3751..3983
                     /locus_tag="WHR98_001638"
                     /pseudo
     CDS             3751..3983
                     /locus_tag="WHR98_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212266.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4042..4350
                     /locus_tag="WHR98_001639"
     CDS             4042..4350
                     /locus_tag="WHR98_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308297.1"
                     /translation="MTPWADAYADLRGKTKVMTTQMGASRDVSKSAKGWSVGIGLNVG
                     KQLTDSVGLEFDPYYRHKTIYKPREIVLDGDKTKMGRSKSNEYGFRVAATFYSQLKSK
                     "
     gene            complement(4332..>4705)
                     /locus_tag="WHR98_001640"
     CDS             complement(4332..>4705)
                     /locus_tag="WHR98_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003755953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEZ2308298.1"
                     /translation="QISGKRYQRLSLVSAQVGNRLIAPMVYQNTMTGVFFEAWFQQCL
                     LPALTQKSVIILDNARFHRMGVLREMAEKLGHKVLPLAPYSPELNPIEKVWANIKRYL
                     RTVLSDYARFDDALLSYFDFN"
BASE COUNT         1149 a         1214 c         1093 g         1249 t
ORIGIN      
        1 gaaacgagaa aaagaaccga aaccgaacaa gccggattac cgcctgcgcg ggaatgacgg
       61 ctcaaaagtt acgaaacgaa aaataaccga aaccaaacaa gtcggattcc cgcgcgggcg
      121 ggaatgacga taagcgtaat ttcaatctgc catattgtct tttcacttgc ctgaaaacag
      181 atttcagcca cctatccctg catccggcgg ctgatgtagt cggcaatcaa atcccgcttt
      241 tcccaaaaaa acttctgcat tttttgttcg gaatacagtt tgcggaccag agtgggcaaa
      301 ccgctgtgga cgatggcggc gatttctttg ttgccttttt cttcctgcat tgccgtctga
      361 aaatccatac ccctgccttt cagatattct gcaaggcggt tgcggatgtg ggaattgagt
      421 tcgatggatt tgagcatttt gcctccgttt tgcggtaagg atttattcga tttgtttatc
      481 cgcctgattt tatcacgttt cccaagcggt ttgcctgtac aataccgctt ttcggcaggg
      541 tgtgggcgat gatgttttct tggttcaagc tgtttcactt gttttttgtc atttcgtggt
      601 ttgcagggct gttttacctg ccgaggattt tcgtcaatat ggcgatgatt gatgtgccgc
      661 gcggcaatcc cgagtatgtg cgtctgtcgg gcatggcggt gcggctgtac cgttttatgt
      721 cgccgttggg cttcggcgcg gtcgtgttcg gcgcggcgat accgtttgcc gccggctggt
      781 ggggcagcgg ctgggtacac gtcaaactgt gtttgggctt gatgctcttg gcttaccagt
      841 tgtattgcgg cgtgctgctg cgccgttttc aggattacag caatgctttt tcacaccgct
      901 ggtaccgcgt gttcaacgaa atccccgtgc tgctgatggt tgccgcgctg tatctggtcg
      961 tgttcaaacc gttttgacgg agcatcttat gccgatagaa atcgaacgcc gttttttgat
     1021 tggaaacgac aactggcggc aatacgccga cgaaccgctg ctgttgaggc agggttatct
     1081 gtctgttgaa aaagaacgca ccgtccgtgt ccgcattgcc ggaaaacagg cgtggctgac
     1141 gctgaaaggc tatatttcgg aaatcagccg cagtgagttt gaatacgaaa tcccgcttgc
     1201 cgatgcggaa aagatgatgg aaacgatgtg cccgtttaaa atggaaaaat ggcgttatcc
     1261 ggtcagatgg ggcggcagcc tgtttgaaat cgatgttttt cttggcgata atgcgccttt
     1321 ggtcgtcgcg gaaatcgagt tgcccgacga gaatgccgat tttgaccgtc cggactggct
     1381 gggacgggaa atcactgccg acggtatgtt taccaatgcc tatttgagca ggcatccgtt
     1441 ctcaagctgg aaaaatgccg tctgaaacgg cttcagacgg cattctccga caaccatcgc
     1501 aaatccaaag acagcctcta tatccttatt tctgctttct ttgttccatt attcccaata
     1561 aatccccata acctaaaatc tcgtcattcc cgcgcaggcg ggaatccggt tctttaaact
     1621 tcggtttttt ccgataaatt gctttagctt ttcgtttccg gattcccgct tttgcgggaa
     1681 tgacgatgga agattgttgt tatttcggat aaattaccct aactttaaaa tcccggattc
     1741 ccatcttcgg gggaataaca atattttcta tttcagccca tcatttgcgg gggattttat
     1801 agagagttta tatttcaata tctcaaataa tgcacaaaag catagcgcgt gcctttgctg
     1861 ctgacacggc gttccgtccg ctctgcttct ttccaatgcg tccggtctat tgcggggaaa
     1921 aatgcatctc cttccacaga caaatccact tcggttatcc gcaaatcggt cgccaatggc
     1981 atcgcttgtc cgtatatctg cgcgccgccc ataatgacgg cttcttccgc gcctgcgcac
     2041 aatgccaatg ccgcctccaa acttgccgcc gtttccgcgc ctgccgcgca ataatccgcc
     2101 tgccggctga tgacgatgtt cctccgtccg ggcaggggtt tgacgggcag ggattcccac
     2161 gttttccgcc ccataatgac gggtttgccc aaggtatagg ctttgaaaaa tgcgaaatct
     2221 tcggggatgt gccaaggcat agcattgccc gccccgatgc acaggttttc cgcacacgcc
     2281 gcaattaggg ttattttgag catatttcct ccacaaaaat gccgtctgaa cgcttcagac
     2341 ggcattttat gacattccgt gtcaaaaatc tcaaccggcg cgcgccatac gttttttgtt
     2401 tgcacctgcc aacaatgcca acagttcttc agtcgcgccc caaccgatac acgcatcggt
     2461 aatgcttttg ccgtacactt ccggcttatc ctgtctgcct tcgaccaaat ggctttccac
     2521 catcacgccc ataatattgc tcccgtcctg ttccaattgg gcagcaatat cttgtgccac
     2581 ttccatctgc cgggtgtaat ccttgcggct gttggcgtgg ctgcaatcta tcatcagctt
     2641 atcggttacc cctgccgcac gcagttgttc cgccgcctcg ctgacgtgtc ccgcatcata
     2701 attcggctct tttccgccgc gcaaaatgac atgacagtcg ggattgccgc cggtatggac
     2761 aatggcggaa tgtccggcct tggttacaga caagaaatga tgcgaatggc tcgccgcacc
     2821 gattgcgtcg atggcaatct tcaaattgcc atccgtaccg tttttaaagc cgacggggca
     2881 ggacagcccg cttgccaatt cgcggtgaac ttggctttcg gtcgtccgcg caccgattgc
     2941 cccccaagaa atcaagtccg cataatattg cggcgtaatc atatccaaaa actcggtaga
     3001 ggcaggcata cccatattgt tcagcgacaa caacaggctg cgcgcctgac gcaaaccgaa
     3061 attgatatcg aacgtaccgt ccaaatgcgg gtcgttaatc aaacctttcc aacccaccgt
     3121 cgtcctcggc ttctcgaaat aaacgcgcat cacaatcaaa agctcgtttt catactgctt
     3181 gcggagtttc aacaaacgct ccgcatattc caacgccgct ttcggatcgt gaatcgaaca
     3241 cggcccgata ataaccaaca gccgcttgtc cctgccgtga accaaatcgg aaatttcctg
     3301 acgggtgcgg tgaaccaagc ccgaagcctc tttggaaatc ggcagctcgt aaagatgggc
     3361 aatcggcggc aacaactctt taacttcttt aatcttaata tcgtctgtgg ggtaatggtg
     3421 tgtcatcttg catctttcct gatggttttt tatacgcggc ttaggttaca tcgtttacct
     3481 tgcacaaaca agtgcaacat attactacaa agctatttta tttcaaaata actgatatat
     3541 cttttttcat agattttaaa tttcatattt ttaatatttt aggaatttta ttccaaagaa
     3601 aaagaaacag attgataaaa acaatacccg ccattcattc ggacaaaacc gcacggaaca
     3661 tccgttttcc cgtttccacg acaatccggt acaggacacc ccgctgccga ttccgcctgc
     3721 acatccggca aaatttcata cgcaaggaaa atgttgaaaa caaaaagaac taattgcttg
     3781 aaaaaagatt taattggaat gcgggtattt cccacacttt ctccatttat tcatcctcat
     3841 tataggaaga aaaacatgaa aaaaccctgc ttgcactctc acttgcagcc gtgtccgccg
     3901 ttacggtagc cgatattccc gagtctaacg gcaagggcaa agccatcatc ggcgataagg
     3961 aaaaacaccg ttaccaagca tgaaaacctt gctttgaaag tccatggcga aatccgccaa
     4021 gatttggggg acggatgatc cttgacccct tgggcggatg catatgcaga tttgcgcggc
     4081 aaaaccaaag tgatgacgac ccagatgggt gcttcccgcg atgtcagcaa aagcgccaaa
     4141 ggttggagtg tcggtatcgg tctgaatgta ggcaaacagt tgaccgacag cgtcggtctc
     4201 gagtttgatc catactaccg tcacaaaaca atctacaaac cccgtgagat tgtcttggac
     4261 ggtgacaaaa ccaaaatggg ccgctccaaa tccaacgagt acggcttccg cgtagccgca
     4321 acgttctata gtcaattaaa atcaaaatag gacagtagtg catcgtcaaa tcgggcgtaa
     4381 tcagacaaaa cggttcgcag ataccgctta atattcgccc acactttctc aatcgggttg
     4441 agctcaggtg aataaggtgc aagaggcaat accttatgtc ccaatttttc cgccatttcc
     4501 cgtaagacac ccatacggtg aaatcgcgca ttatctaaaa taatcaccga tttttgagtc
     4561 aatgcgggca gtaggcattg ctgaaaccac gcttcaaaaa agactccggt catcgtattt
     4621 tgataaacca tcggagcaat cagccggttg ccgacttgtg cggacaccaa agataagcgt
     4681 tggtatcttt ttccacttat ctgcg
//
LOCUS       DAWGNT010000143         4698 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.143, whole genome shotgun sequence.
ACCESSION   DAWGNT010000143 DAWGNT010000000
VERSION     DAWGNT010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4698
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.143"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(416..952)
                     /locus_tag="WHR98_001641"
     CDS             complement(416..952)
                     /locus_tag="WHR98_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003754827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEZ2308299.1"
                     /translation="MDLREVKLGGETIYEGGFVSISKDKVRLPNGNEGQRIVIRHPGA
                     ACVLAVTDEGKVVLVRQWRYAANQATLELPAGKLDVAGEDMAACALRELAEETPYVAD
                     SVRLLYSFYTAVGFCNEKMYLFEAEGVRLGSTLANDEDEITETVLMSKEEVRQALAND
                     EIKDGKTLIGLQYWLMKD"
     gene            complement(986..1342)
                     /gene="folB"
                     /locus_tag="WHR98_001642"
     CDS             complement(986..1342)
                     /gene="folB"
                     /locus_tag="WHR98_001642"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003688545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEZ2308300.1"
                     /translation="MDKIFLHGMKADTLIGVYGWERERLQTLIVDLDIGVPEKAGSDD
                     DIANTVHYAEVCETLRRHLKEQDFLLLEALAEYIADLVLGYFGAVWVRVKIVKPGILE
                     GVREVGVEIERGKRED"
     gene            1398..2000
                     /gene="plsY"
                     /locus_tag="WHR98_001643"
     CDS             1398..2000
                     /gene="plsY"
                     /locus_tag="WHR98_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEZ2308301.1"
                     /translation="MFNISAVAVSYLIGSLSFAVIVSKYYGMNDPRTYGSGNPGATNV
                     LRSGKKKAAALTLLGDAAKGLVAVLLARVLQEPLGLSDSAIAAVALAALVGHMWPVFF
                     GFKGGKGVATALGVLLALSPATALVCALIWLVMAFGFKVSSLAALTATIAAPLAALFF
                     MPHTSWIFATLAIAILVLLRHKSNILNLIKGKESKIGEKR"
     gene            2088..2933
                     /locus_tag="WHR98_001644"
     CDS             2088..2933
                     /locus_tag="WHR98_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HEZ2308302.1"
                     /translation="MLSYRHAFHAGNHADMLKHFTLFLVLQYFNRKDKPYWYIDTHGG
                     AGVYNLEGSEAQKVGEYRQGIALLRQAQNLPAELSDFAAHIQKILPSPELYCGSPWLA
                     QSLTRVGDKLRLFELHPTDFVHLQNNMGEAGLGKRGQVLREDGYKGLISLLPPPPRRA
                     AVLIDPPYEEKQDYWRVTETLKSALKRFESGCYLIWYPCLSREESRKLPEELKKLVPD
                     NYLHAELHVHAPKADGFGMHGSGMFVINPPYLLAEQLAANLPALTRLLAQDEGARYLL
                     DSKIR"
     gene            3179..4153
                     /locus_tag="WHR98_001645"
     CDS             3179..4153
                     /locus_tag="WHR98_001645"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEZ2308303.1"
                     /translation="MDTLTRFLPEHLQQNQLPEALGGVLLSVVSACTEINAKVRLGAL
                     AGVLGMAGTGNIQGEDQKKLDVIANNIMIDTLKANPAVAGLASEEEDSFVSAGENGRY
                     LVLFDPLDGSSNIDVNISVGTIFSILEKPEGALATESFLQTGRQQLAAGYILYGPQTQ
                     LVFTFGHGVYMFTLNAENEFVLTKEKPKVPESTKEFAINMSNRRHWLPPVQQYIDELL
                     AGETGTRGKNYNMRWVASMVAEIHRILMRGGVFMYPQDKRDPSKPGKLRLMYEANPMS
                     LILEQAGASASNAYQAMLDIQPENLHQRVAVFMGSSEEVAYLDRLHAK"
     gene            complement(4296..4514)
                     /locus_tag="WHR98_001646"
     CDS             complement(4296..4514)
                     /locus_tag="WHR98_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEZ2308304.1"
                     /translation="MFPEYRDLISKLKQENSRFARLFDEHNELDDKITGLVNNPVTSG
                     AETIDELKKAKLKLKDELYAILQKAAGK"
BASE COUNT         1214 a         1405 c          984 g         1095 t
ORIGIN      
        1 ctcaaattca aattgggctt ttaggtctat aacaaagaaa aagccttggt aggataaacc
       61 taccaaggct ttttcttaaa aaaacgctct attaccgtgc ctaaaaatgc aaaaaagtaa
      121 ccgtcataac ccttttgcca aaatcaatat catcatccga tgaatgaatt gacggtatat
      181 aagaaagaat taataagctc ataaaccggt aagaaaaatc agtaacaaag atattcatta
      241 ttaaccattt taaaaattat catgttcgtt tgggtaatta ttataccctt ttccctctta
      301 ttactaaagc acgaatgact ttaaaggacg cgcccagaga caagccgaaa aggcatatct
      361 catccgccaa acaaaatgcc caccgactta ctccggcagg cagttcaaca ccctgtcaat
      421 ccttcatcag ccagtattgc aaaccgatta atgtcttgcc gtctttaatt tcatcgtttg
      481 ctaatgcctg acggacttct tctttcgaca tcaatacggt ttccgtaatc tcgtcttcgt
      541 cattggcaag cgtactgccc aaacgcacgc cttccgcttc gaacagatac attttttcgt
      601 tgcaaaaacc gaccgccgta taaaaactgt aaagcaggcg cacgctgtcg gcaacataag
      661 gcgtttcttc agccagttct ctcagcgcac acgctgccat atcctcgccc gccacatcca
      721 gcttgcccgc aggaagttcc aatgtcgcct gatttgccgc ataacgccac tgccgcacca
      781 aaaccacttt cccctcgtcc gtaaccgcca acacgcatgc cgcacccgga tggcggatga
      841 cgatacgctg cccttcattg ccgttgggca acctgacctt atccttgctg atgctgacga
      901 aaccgccctc gtaaatggtt tcgccgccta attttacttc cctcaaatcc acttcatatc
      961 tcctttccgt ttcctattct gccgttcaat cttcacgctt gccgcgctcg atttccacgc
     1021 caacctcgcg cacgccttcc aaaatacccg gcttgacgat tttcacgcgc acccacaccg
     1081 cgccgaaata tcccaaaacc aaatcggcaa tatattccgc caacgcttcc aaaagcagga
     1141 aatcctgttc tttcagatgt cggcgcagcg tttcgcatac ctcggcataa tgcaccgtat
     1201 tggcaatatc gtcgtccgaa cccgctttct cgggaacacc gatgtccaaa tcgacaatca
     1261 gggtctgcaa ccgttcgcgc tcccagccgt acacgccgat aagcgtatcc gccttcatac
     1321 cgtgcaaaaa gattttatcc ataatccgcc ccgttttttg ctaaaataac cgcaccattc
     1381 taagtaaagt accgcaaatg ttcaacatat cggctgttgc cgtttcctat ctgatcggct
     1441 cactttcttt cgccgtcatc gtgtccaaat attacggcat gaacgacccg cgcacctacg
     1501 gatcgggcaa tccgggggca accaatgttt tacgcagcgg caaaaaaaag gcggccgcgc
     1561 tgacgctctt gggcgatgcc gccaaaggtt tagttgccgt tttgcttgca cgcgtgcttc
     1621 aagaaccgct cggtttatcc gacagcgcaa tcgcggccgt cgcactcgcc gcgctggtcg
     1681 ggcatatgtg gccggtgttt ttcggattta aaggcggcaa aggcgtggca acggcattgg
     1741 gcgtgcttct ggcactctct cctgcaactg ccttggtctg cgcgttgatt tggcttgtga
     1801 tggcattcgg cttcaaagta tcctcccttg ccgcattaac cgccacaatc gccgcccccc
     1861 ttgccgcact gttttttatg ccgcatactt cttggatttt cgcaaccctc gcaatcgcca
     1921 tattggtgtt gctccgccat aagagcaaca tcctcaacct gattaaaggc aaagaaagca
     1981 aaatcggtga aaaacgctga ttcggcattt gttttccatt acgtcatgcc gtctgaaacc
     2041 atgttcccgc gttcagacag catttccgca caaacggctt tcataccatg ctcagttaca
     2101 gacacgcatt ccacgccggc aaccacgccg atatgctcaa acactttacc ttgtttttag
     2161 tgctgcaata tttcaaccgc aaagacaagc cctactggta catcgacacg cacggcggcg
     2221 cgggtgtgta caatctcgaa ggcagcgagg cgcagaaagt cggcgaatac cggcaaggca
     2281 tcgccctgct ccgacaggcg caaaacctgc ctgccgaact ctctgacttt gccgcgcaca
     2341 tacaaaaaat cctgccctcg cccgaacttt actgcggttc tccgtggctg gcacaatcgc
     2401 tgacccgcgt cggcgacaaa ttacgcctgt ttgagctgca ccccaccgac tttgtccatc
     2461 tgcaaaacaa tatgggcgaa gcaggattgg gcaaacgcgg acaagtgttg cgcgaagacg
     2521 gttacaaagg gctgatttcc ctgctgccgc ccccgccgcg ccgtgccgcc gtcctcatcg
     2581 acccgcctta cgaggaaaaa caggactact ggcgtgtaac ggaaacgctg aaatccgctt
     2641 taaaacggtt tgagtccggc tgttatctca tctggtatcc ctgcctcagc cgcgaagaaa
     2701 gccgcaagct gcccgaagaa ctgaaaaaac tcgttcccga caactacctt cacgccgaac
     2761 tgcacgtcca cgcgccgaaa gccgacggtt tcggtatgca cggcagcgga atgttcgtca
     2821 tcaatccgcc ctatctgttg gcggaacaat tggcggcaaa cctccccgcc ctgacgcggc
     2881 tgctggcgca agacgaaggc gcgcgctacc ttttggacag caaaatccgc tgaccccgat
     2941 gccgtctgaa acccttcaga caacatctcc cgtcaaataa acaaaaccgg acgatatacc
     3001 ggcagtcggc acttttaaga ataaatatcc cctcatccgc ctgccgcgtt ccgacttgcc
     3061 ccatgccgtt tttttacact acaatcccct agactatcct gcaaaacgca ccaaaggaat
     3121 acgccacaat aacctgccgc ctttcagacg gcacaaacct ttccgaaacg agcaaactat
     3181 ggacacactg acccgattcc tccccgaaca cctgcaacaa aaccagctgc ccgaagcact
     3241 cggcggcgtt ttactgtccg ttgtttccgc ctgcaccgaa atcaacgcca aagtccgcct
     3301 cggcgcactg gccggcgtat tgggtatggc gggcacgggc aatattcagg gcgaagacca
     3361 aaaaaaactg gatgttatcg ccaacaacat catgattgac acactcaaag ccaaccctgc
     3421 cgttgccggt ttggcaagcg aggaagaaga ctctttcgta agtgccggtg aaaacggacg
     3481 ctatctcgtc ctattcgacc ctttagacgg atcgtccaat attgatgtca acatttccgt
     3541 cggtacaatt ttctccatcc ttgaaaaacc cgaaggcgca ttggcaaccg aatcattcct
     3601 tcaaacgggc agacagcagc ttgccgcagg ctatatcctc tacgggcctc aaacccagct
     3661 cgtattcaca ttcggacacg gcgtatatat gttcacgctc aatgccgaaa acgaatttgt
     3721 gctgaccaaa gaaaaaccga aagtacccga aagtaccaaa gaatttgcca tcaatatgtc
     3781 caaccgccgc cactggctgc cccccgtcca acaatacatc gacgagctct tggcgggcga
     3841 aaccggcacg cgcggcaaaa actacaatat gcgctgggta gccagcatgg ttgccgaaat
     3901 ccaccgcatc ctgatgcgcg gcggcgtgtt catgtatccg caagacaaac gcgacccgtc
     3961 caaacccggc aaactgcgcc tgatgtacga agccaaccct atgagcctga tactcgaaca
     4021 ggcgggcgca tcggcaagca acgcatatca agccatgctc gacatacagc ccgaaaacct
     4081 gcaccaacgc gtcgccgtct tcatgggcag cagcgaagaa gtcgcctatc tcgaccgcct
     4141 gcacgcaaaa tagacagaca gccgttcaca caagtacacg gcggcggcaa tccgataccg
     4201 ccgccgttat ttcaaacagc acaagccttc tggtcaaatg acaaaaatgc cgtctgaaaa
     4261 catttcagac ggcatttcaa aaactcaaac ccgaattatt ttcccgctgc tttttgcagg
     4321 atggcgtaca actcgtcttt cagtttcaat ttggcttttt tcagctcatc gatggtttcc
     4381 gcaccgctgg taaccggatt gttgaccaga ccggtaattt tatcgtccag ctcgttgtgt
     4441 tcgtcgaaca gacgggcgaa gcgggaattt tcctgtttca atttggaaat caaatcacgg
     4501 tattctggga acatatcgct ttcctctctt ggtttacggt taaaaagtca aactgaatct
     4561 ttacattaat tataacaaag ataatatttt tatccagtgt tttatcggat acggcaaaat
     4621 tttcttttaa caccgccgtc cggttgataa aaacgttgac aatatcacgc tttacgcata
     4681 aattttcagc ctttccta
//
LOCUS       DAWGNT010000144         4632 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.144, whole genome shotgun sequence.
ACCESSION   DAWGNT010000144 DAWGNT010000000
VERSION     DAWGNT010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4632
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.144"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(99..1037)
                     /locus_tag="WHR98_001647"
     CDS             complement(99..1037)
                     /locus_tag="WHR98_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003753550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEZ2308305.1"
                     /translation="MLELNGLCKRFGGKTVADNICLTVGRGKILAVLGRSGCGKSTLL
                     NMIAGIVRPDGGEIWLNGENITRMPPEKRRISLMFQDYALFPHMSALENAAFGLKMQK
                     MPKAEAERLAMAALAEVGLENEAHRKPEKLSGGEKQRLALARALVVRPSLLLLDESFS
                     SLDTHLRDRLRRMTAERIRKGGIPAVLVTHSPEEACTAADEIAVMHEGKILQCGTPET
                     LVQTPAGVQVARLMGLPNTDDDRHIPQHAVRFDQDGMECRVLSRTCLPESFSLSVLHP
                     EHGILWLNLDMPHAGEISGNDTVRIHIEDREIVRFR"
     gene            complement(1046..1921)
                     /locus_tag="WHR98_001648"
     CDS             complement(1046..1921)
                     /locus_tag="WHR98_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEZ2308306.1"
                     /translation="MPTVRFTESVSKHDLDALFEWAKASYGAESCWKTLYLNRLPLGN
                     LSPEWAERVKKDWEAGCSESSDGIFLNADGWSDMGGRLQHLARTWNKAGLLHGWRNEC
                     FDLTDGGGNPLFTLERAAFRPFGLLSRAVHLNGLTESDGRWHFWIGKRSPHKAVDPDK
                     LDNIAAGGVSGGEMPSEAVCRESSEEAGLDKTLFPFIRPVSRLHSLRPVSRGVHNEIL
                     YVFDAVLPETFLPENQDGEVACFEKMDIGSLVATMLSGNMMHDAQLVTLDAFCRYGLI
                     DAAHPLSEWLDGIRL"
     gene            complement(2103..2179)
                     /locus_tag="WHR98_001649"
     tRNA            complement(2103..2179)
                     /locus_tag="WHR98_001649"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2143..2145),aa:Met,seq:cat)
     regulatory      2329..2428
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2519..4420
                     /gene="thiC"
                     /locus_tag="WHR98_001650"
     CDS             2519..4420
                     /gene="thiC"
                     /locus_tag="WHR98_001650"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEZ2308307.1"
                     /translation="MTTPKKTAKTSGNEARELADLSEDIGIRFKYPNSERVYLQGSRD
                     DIRVPLREIRQDDTYTAQGAEANPPIPVYDTSGVYGDPAAHIDLKQGLPHIRTAWLNE
                     RGDTEILPKLSSEYGIERAHDPKTAHLRFNQITRPRRAKSGSNVTQLHYARQGIITPE
                     MEFVAIRERLKLDELSQKSEYAKLLKQHAGQSFGANIPTRPDQITPEFVRQEIAAGRA
                     IIPANINHPELEPMIIGRNFRVKINGNLGNSAVTSSLTEEVEKMVWSLRWGADTIMDL
                     STGAHIHETREWIIRNAPVPIGTVPIYQALEKTGGIAEDLTWDLFRDTLIEQAEQGVD
                     YFTIHAGVLLRYVPMTANRLTGIVSRGGSIMAKWCLAHHRENFLYTHFDEICEIMKAY
                     DVSFSLGDGLRPGCIADANDESQFAELHTLGELTDKAWKHDVQVMIEGPGHVPLQRVK
                     ENMTEELQHCFEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWYGTAMLCYVTPKEHL
                     GLPDKEDVRTGIITYKLAAHAADLAKGWPGAQLRDNALSKARFEFRWRDQFRLSLDPE
                     RAESFHDETLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYADKQKAQRQGMEEKAVEF
                     VKKGAKIYS"
BASE COUNT         1133 a         1329 c         1213 g          957 t
ORIGIN      
        1 ttcggataaa ttttgcagcc ctgataaaaa atatggctgc tttggtaaaa aaatgccgtc
       61 tgaaaggttt tcagacggca ttttgttttt aagaagcatc aacggaagcg gacgatttcc
      121 ctgtcttcga tatggatgcg taccgtatcg tttcccgata tttcaccggc gtgcggcata
      181 tcgaggttca gccacaggat gccgtgttcc ggatggagga cggacaggct gaacgattcg
      241 ggcaaacagg tacgggataa tacgcggcac tccatgccgt cttggtcgaa acgcaccgca
      301 tgttgcggaa tatggcggtc atcgtcggta ttgggcaaac ccatcagtcg ggcgacctgc
      361 acgccggcag gcgtttgaac caaggtttcg ggcgtaccgc attgaaggat tttcccctcg
      421 tgcatgacgg cgatttcgtc cgccgccgtg caggcctctt cgggcgaatg cgtcaccaaa
      481 acggcaggga tgccgccctt gcggatacgt tcggcagtca tgcggcgcag ccggtcgcgc
      541 aaatgcgtgt ccaaactgga aaacgattcg tccaacagca gcagggaagg gcggacaacc
      601 aaagcgcgcg ccaacgccaa ccgttgcttc tcgcctccgg aaagtttttc aggcttgcgg
      661 tgcgcctcgt tttccagtcc gacttcggca agtgccgcca tggcaaggcg ttcggcttcg
      721 gctttcggca ttttttgcat tttcaaaccg aatgccgcat tttccagcgc actcatatgg
      781 ggaaacagcg cgtaatcttg aaacatcaga gaaatacggc gtttttcggg cggcatacgg
      841 gtaatgtttt ccccgttcag ccatatttcc ccaccgtccg gccggacaat ccccgcaatc
      901 atattcagca gggtggattt tccgcatccc gaccgcccca gtacggcgag tattttgccg
      961 cgcccgacag tcaggcagat gttgtcggca accgttttgc cgccgaagcg tttgcagagt
     1021 ccgttcagtt caagcatggc gcatcctata aacgtatgcc gtccagccac tcggacagcg
     1081 gatgggcggc atcaatcaga ccgtaacggc aaaacgcgtc cagcgtaacc agttgcgcgt
     1141 cgtgcatcat gtttcccgac aacatggtgg caaccaagct gccgatgtcc attttttcaa
     1201 aacacgcaac ctcgccgtcc tgattttcag gcaggaaggt ttcgggtagg acggcatcga
     1261 atacatacag gatttcattg tgcacacccc ggctgacggg gcgcaggctg tgcagccgag
     1321 ataccggacg gataaacgga aacagcgttt tatccaaacc ggcttcttcg ctgctttcgc
     1381 ggcacacggc ttcagacggc atttcgccgc cggaaacacc gccggcggca atattgtcga
     1441 gtttgtcggg atcgactgct ttgtgcggac tgcgcttgcc tatccagaaa tgccatcggc
     1501 cgtccgattc ggtcagtccg ttgagatgga cggcgcggct gagcagtccg aacggacgga
     1561 aagcggcgcg ttcgagcgtg aacaaggggt tgccgccgcc gtcggtcagg tcgaaacact
     1621 cgttgcgcca tccgtgaagc agccccgcct tgttccatgt gcgggcgagg tgctgcaagc
     1681 ggccgcccat atctgaccag ccgtccgcat tcaggaaaat gccgtctgaa gactccgagc
     1741 agcctgcctc ccagtctttt ttgacgcgct ccgcccattc cggcgacaga ttgcccaaag
     1801 gcagacggtt cagatacagc gttttccagc aactttctgc accgtaactt gcttttgccc
     1861 actcgaacag ggcatcaagg tcgtgtttgc tgacggattc ggtaaaacgg acggtcggca
     1921 tagtcggctt tcttgaagac aatgcggaag attgtagcca aactgcctga atttgcaacc
     1981 gcaaacagac ggcgggctgc cgttccgata ttgcggcagg aaggaaaatc cggcaaaaaa
     2041 cggaggcggc aggaaacagg caaaacaaaa cccctcggca ttgaaccgag gggtttgata
     2101 tttggttgcg ggagcaggat tcgaacctac gaccttcggg ttatgagccc gacgagctac
     2161 catgctgctc catcccgcgt cagaagatga aactatacgg cagatttttt atgttgtcaa
     2221 acattatttc cgcgaaaaat cataaaattt tgccgtccgg tggtttatgc ctgatttgaa
     2281 atattatttt ctttacaaaa gttcatgttc gtgatttaat tttggttaac attgaaacag
     2341 gggtgctgca tgatgttcag gcggctgaga aatacccttt acacccgatc tggataatac
     2401 ctgcgtgggg agttttcacg gattctgctt ttcagacggc attggttttc aaatgccgtc
     2461 tgaaaacgca aaacgctcct gtttctttat tctaaacgag aaaacaggag cattttttat
     2521 gactacgcca aaaaaaaccg ccaaaacttc cggcaacgaa gcgcgcgaac ttgccgactt
     2581 gagcgaagac atcggtatcc gcttcaaata tccgaactcg gaacgcgtgt atctgcaagg
     2641 cagccgcgac gacatccgcg tgcctttgcg tgaaatccgt caggacgaca cctatacggc
     2701 gcaaggcgcg gaagccaacc cgccgattcc cgtctatgac accagcggcg tgtacggcga
     2761 tccagcggca cacatcgacc tgaaacaagg tctgccgcac atccgcaccg catggctgaa
     2821 cgaacgcggc gataccgaaa tcctgcccaa gctctccagc gaatacggca tcgaacgcgc
     2881 acacgatccg aaaaccgccc atctgcgctt caaccaaatc acccgcccgc gccgcgcgaa
     2941 aagcggtagc aacgtaaccc agcttcacta cgcgcgccaa ggcattatca cgcccgaaat
     3001 ggagtttgtc gccatacgcg aacgtttaaa attagacgaa ttgtcccaaa aatcggaata
     3061 cgccaaactc ttgaaacaac acgcagggca aagtttcggc gcgaacatcc caacccgtcc
     3121 cgaccaaatc acgcccgaat tcgtgcgcca agaaatcgcc gccggacgcg cgattatccc
     3181 cgccaacatc aaccatcccg aactcgaacc gatgattatc ggccgcaact tccgcgtcaa
     3241 aatcaacggc aacttgggca attccgccgt cacttccagc ctgaccgaag aagtcgaaaa
     3301 aatggtgtgg tcgctgcgtt ggggcgcgga cacaattatg gacttatcca caggcgcgca
     3361 catccatgaa acgcgcgaat ggattatccg caacgcgccc gtccccatcg gcaccgtgcc
     3421 tatttatcag gctttggaaa aaaccggcgg cattgccgaa gatttgactt gggatttgtt
     3481 ccgcgacacc ttaatcgagc aggcggaaca aggcgtggac tatttcacca tacacgcggg
     3541 cgtgttgctg cgttatgtac cgatgaccgc caaccgcctc accggcatcg tctcgcgcgg
     3601 cggttcgatt atggcgaaat ggtgtttggc acatcatcgg gaaaacttcc tctacacgca
     3661 tttcgacgaa atctgcgaaa tcatgaaagc gtatgatgtg tcgttcagcc tcggcgacgg
     3721 cctgcgcccc ggctgcattg ccgatgccaa cgacgaatcc caattcgccg agctgcacac
     3781 cttgggcgaa ttgaccgata aggcgtggaa acatgacgta caagtcatga tcgaaggccc
     3841 cggccatgtg ccgctgcaac gcgtcaaaga aaacatgacc gaagagctgc aacactgctt
     3901 tgaagcacct ttttacacac tcggcccgct cgttaccgac atcgcacccg gctacgacca
     3961 catcacctcg ggcataggcg cggccaatat cggctggtac ggcacggcga tgctttgtta
     4021 cgttaccccc aaagaacatt tggggctgcc cgacaaagaa gacgtgcgca ccggcatcat
     4081 cacctacaaa ctcgccgccc acgccgccga tctcgccaaa ggctggccgg gcgcacagtt
     4141 gcgcgacaac gccctgagca aagcgcgttt cgagttccgc tggcgcgacc aattccgcct
     4201 cagcctcgac cctgaacgtg ccgagagctt ccacgacgaa accctgcctg ccgaaggcgc
     4261 gaaaatcgcc cacttctgct caatgtgcgg ccccaaattc tgctcgatga aaatcacgca
     4321 ggaagtgcgc gactacgccg acaagcaaaa agcccaacgg cagggcatgg aggaaaaagc
     4381 ggtcgagttc gtcaaaaaag gcgcgaagat ttacagttga aacgtcaagc aaaaaatgcc
     4441 gtctgaaacc cggaaaaaag gcttcagacg gcattctttc gcttgtgaaa atatagtgga
     4501 ttaacaaaaa tcaggacaag gcgacgaagc cgcagacagt acagatagta cggaaccgac
     4561 tcacttggtg cttcagcacc ttagagaatc gttctctttg agctaaggcg aggcaacgcc
     4621 gtactggttt tt
//
LOCUS       DAWGNT010000145         4568 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.145, whole genome shotgun sequence.
ACCESSION   DAWGNT010000145 DAWGNT010000000
VERSION     DAWGNT010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4568
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.145"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..387)
                     /locus_tag="WHR98_001651"
     CDS             complement(<1..387)
                     /locus_tag="WHR98_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton exchanger"
                     /protein_id="HEZ2308308.1"
                     /translation="MMPPVTGVPNSHLLFDVAFAVVVLSLLIRGMTIPVMARLLKVAM
                     PNKPEPKDTHDIWLAKKEIVRMSAFKVVAESEAEGHHPDTVEPISDSFDARCFALIRN
                     GIRIEMQSDTVLQAGIWRGTSCPTARS"
     gene            complement(387..668)
                     /locus_tag="WHR98_001652"
     CDS             complement(387..668)
                     /locus_tag="WHR98_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308309.1"
                     /translation="MDWMGSLFLPGGALLFLSVVSTTLPARLGMPLLLVSPAGVLDGA
                     AEALAIAAFLMLVARPPAVFGGLWKFNYSLREKAYISWLGLAEPCRFRR"
     gene            864..1322
                     /locus_tag="WHR98_001653"
                     /pseudo
     CDS             864..1322
                     /locus_tag="WHR98_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237797.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 family protein"
     gene            1222..1590
                     /locus_tag="WHR98_001654"
     CDS             1222..1590
                     /locus_tag="WHR98_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 family protein"
                     /protein_id="HEZ2308310.1"
                     /translation="MAAIGIGMTVLVYGIVAVIVKLDDLGMLLMRRPQTFSRSLGQML
                     TAFMPCFMRGLSVVGTLAMFLIGGVLVAHNLGLLHDFLHAQHWDAGWAEYFANLVVGL
                     LSGSIACAPALPLMNRFGRH"
     gene            1659..3197
                     /gene="lnt"
                     /locus_tag="WHR98_001655"
     CDS             1659..3197
                     /gene="lnt"
                     /locus_tag="WHR98_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEZ2308311.1"
                     /translation="MVSKLDKYWQHPALYWPLLILFAAATPFTFAPYYHFWLMPLIFG
                     AFVRLIELRPRFAVSSAYLFGLTAYTTQFYWIHTALHDVSGLPDLYAVPLTFLLPAYL
                     ALYPALCFWLWKKFTLPRGIKIGLVLPILWTLTEFARERFLTGFGWGAIGYSQITPDS
                     PLAGFAPLGGIHMVTLATAFLGVWLVLASDNTTRSGKRLLPIILIAALLAAGYTARQT
                     DFTRPDGSRSTVALLQGNIDQTLKWREDQVIPTIQKYYEQVGKTTADIVILPETAIPV
                     MRQNLPENILAKFAEQAQNNGSALAVGISQYTSDGNGYENAVINLTGYQENNQDGIPY
                     YAKNHLVPFGEYKPLPFLTTPLYKMMNMPLSDFRKGGGKQSALLMKNQKIAFNICYED
                     GFGDELIAAAKDATLLANASNMAWYGKSNAMYQHLQQSQARAMELGRYMVRATNTGAT
                     AIISPKGNIIAQAQPDTETVLEGHIKGYVGETPYMKTGSSWWLMGILTLAALILFIFR
                     NKEH"
     gene            3461..4324
                     /gene="rpoH"
                     /locus_tag="WHR98_001656"
     CDS             3461..4324
                     /gene="rpoH"
                     /locus_tag="WHR98_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HEZ2308312.1"
                     /translation="MNNAFALPAIQSGNGSLEQYIHTVNSIPMLSQEEETRLAERRIK
                     GDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLF
                     SFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNALSPKEAQDIADD
                     LGVKLSEVLEMEQRMTGHDIAIMADNSDDEDSFAPIDWLADHDSEPSRQLSKQAHYAL
                     QTEGLQNALAQLDDRSRRIVESRWLQDDGGLTLHQLAAEYGVSAERIRQIEAKAMQKL
                     RGFLTEEAEAV"
BASE COUNT         1120 a         1421 c         1053 g          974 t
ORIGIN      
        1 cgaccttgcc gtcgggcagg atgtaccacg ccaaatcccc gcctgaagca cggtgtcgga
       61 ctgcatttct attcggatgc cgttgcgtat caatgcgaaa cagcgtgcgt caaacgaatc
      121 ggaaatcggt tcgaccgtat cgggatggtg tccctccgct tcagattcgg caaccacttt
      181 aaacgccgac attctgacaa tttccttttt cgccagccaa atatcatgcg tatctttcgg
      241 ttcgggcttg ttgggcatgg caaccttcaa cagccgcgcc atcacaggaa tcgtcattcc
      301 ccgaatcagc agcgacagca ccaccacggc aaacgccaca tcaaacagca ggtgcgaatt
      361 gggaacgccc gttaccggcg gcatcatcac cggcgaaatc ggcacggctc cgccaaaccc
      421 aaccaactga tatacgcctt ttcacgcagg ctgtaattga atttccacaa accgccgaac
      481 actgccggcg gacgcgcgac cagcatcagg aacgccgcaa tcgccaaggc ttccgccgcc
      541 ccgtccaaca cgccggcggg agaaaccagc agcaaaggca ttcccaaacg tgcgggtaaa
      601 gtggtcgaaa ccacgctcag aaacaacagt gcgccacccg gcaggaacag actgcccatc
      661 caatccacgc taacgattct cccttaaaat tcatgaaatt aaaatcgaaa gactgtaaca
      721 cggcattttc ttttcacgaa actttacttc acgtccgcca cagcgttcag acggcatttt
      781 cctgtttcat gccgcctgaa accgcccaaa tccgcgttct cctatataat gtcggacttt
      841 gcgccgcatt tcaggattct ttaatggcat ttgcctcact atttaccctg ccggacgaca
      901 tcaccgccgt tttggacgat gttgccctga tgaccaaagc cgccgcaaag aaaaccgccg
      961 gcgtggtcgg cgacgatttg gcacccaatg ccaaccgggt tacgggcgta tcggcagaac
     1021 gcgagttgcc gattgtttgg tcgatggcga aaggttcttt ttccaacaag ccggttttgg
     1081 tgcctgcggc cctgctgctt tccgccttcc tgccgcaact cattacgccg cttttgacgg
     1141 caggcggcat ttatctgtgc tttgacggcg tagaaaagct gctgcacaag tttctgcacc
     1201 gacatgacgc gcatgctcgt aatggcggca atcggcatcg gcatgactgt tttggtgtac
     1261 ggaatcgttg ccgtcatcgt caaactcgac gacttaggca tgctgctgat gcgccgccca
     1321 caaacctttt cgcgcagttt ggggcaaatg ctgactgcct ttatgccttg ctttatgcgc
     1381 ggtttgagcg tggtcggcac gcttgccatg tttcttatcg gcggcgtact ggtcgcccac
     1441 aacctcggcc ttctgcacga tttcctgcac gcgcaacact gggacgctgg ctgggcggag
     1501 tacttcgcca acctcgttgt cgggctgctt tccggttcga ttgcctgcgc ccccgccttg
     1561 ccgctgatga atcgtttcgg caggcattga tttctttttc aaataccgat gccgtttgaa
     1621 agatgttcag acggtatctt ccgaacagac agatgaatat ggtttccaaa ctggacaaat
     1681 actggcagca ccccgccctc tactggcctt tgctcatcct ttttgccgcc gccaccccct
     1741 ttaccttcgc accctactac cacttttggc tgatgccctt gattttcggt gccttcgtcc
     1801 gcctcatcga actgcgtccg cgttttgctg tctcttccgc ctacctgttc ggcctgaccg
     1861 catacacgac acagttctac tggatacaca ccgccctgca cgacgtttcc ggcctgcccg
     1921 acctctatgc cgtaccgctg accttcctac tccccgccta ccttgccctt tatccggcac
     1981 tgtgtttctg gctgtggaaa aaatttaccc tgcctcgggg cataaaaatc ggtttggtac
     2041 tgcccatcct gtggacgctg accgagtttg cccgcgaacg tttcctgacc ggattcggct
     2101 ggggcgcaat cggctactcc caaatcaccc cggacagccc gctcgccggc tttgccccat
     2161 tgggcggcat ccacatggtt acactggcaa ccgcctttct cggtgtctgg ctggttttgg
     2221 cgagtgataa caccacacgt tcgggcaaac gcctgcttcc aattatcctg attgccgccc
     2281 tgcttgccgc aggctacacc gcccgacaaa ccgacttcac ccgccccgac ggcagccgca
     2341 gcaccgtcgc cctgcttcaa ggcaacatcg accaaaccct caaatggcgt gaagaccaag
     2401 tcatcccgac catacagaaa tattacgaac aggtcggcaa aaccactgcc gacatcgtca
     2461 tcctgcccga aaccgccatc cccgttatgc gccaaaacct gccagaaaac atactggcaa
     2521 aatttgccga acaggcgcaa aacaacggca gcgcgctcgc cgtcggcatc agccaataca
     2581 cttcggacgg caacggttac gaaaacgccg tcatcaacct gaccggttat caggaaaaca
     2641 atcaggacgg catcccctac tacgccaaaa accacctcgt ccccttcggc gaatacaaac
     2701 cgctgccttt cctgaccacg ccgctttaca aaatgatgaa tatgcccctt tccgacttcc
     2761 gcaaaggcgg cggtaagcaa tccgccctgc tgatgaaaaa ccaaaaaatc gccttcaaca
     2821 tctgttacga agacggattc ggcgacgaac tgattgccgc cgccaaagat gccaccctgc
     2881 ttgccaatgc cagcaatatg gcgtggtacg gaaaatccaa cgccatgtac cagcacctcc
     2941 aacaatcgca ggcgcgggct atggaactcg gacgctatat ggtccgtgcc accaacaccg
     3001 gcgcaaccgc catcatctcc cccaaaggca acatcatcgc ccaagcccaa cccgatacgg
     3061 aaaccgtatt ggaaggacac atcaaaggct atgtcggcga aacgccctat atgaaaaccg
     3121 gcagttcatg gtggttgatg ggcatattga ccctagccgc actgattctt ttcatcttcc
     3181 gaaacaaaga acactgatac ctgcacagcc cgtccggacg ggctgtcttt tttcaaaccg
     3241 gctgtttaca tacaactacg tatgtaatat aattccgaaa tcggattgag ccatcaggtt
     3301 tacaaaatca atcaaacctg ccttacaaaa ttttcctgtc tttcaaacct tagcgcatat
     3361 ctcctgccaa acatacaaaa tacaagccaa gcagtgatat actgcatccc aacacagcaa
     3421 accgccgata cgcagtttca gccgaaagga aatgccccaa atgaataacg ctttcgcatt
     3481 acccgccatc caaagcggca acggcagcct cgaacaatac atccacaccg tcaacagcat
     3541 cccgatgctg tcccaggaag aagaaacccg cctcgccgaa cgccggataa agggcgacct
     3601 caacgccgcc aaacaactca tcctgtccca cctgcgcgtc gtcgtttcca tcgcgcgcgg
     3661 ctatgacggc tacgggctga atcaggcaga cctgattcag gaaggcaata tcggactgat
     3721 gaaggcggtc aaacgctacg agccaggtcg aggtgcacgc ctgttttcat ttgccgtgca
     3781 ttggattaaa gcggaaattc acgaattcat cctgaggaac tggcgtttgg tccgcgttgc
     3841 caccaccaaa ccgcaacgca agctgttttt caatttacgc agtatgcgta aaaacctcaa
     3901 cgccctgtct cccaaagagg cacaagacat cgccgacgat ttgggtgtca aactttccga
     3961 agttctggaa atggaacagc gcatgacggg acacgacatc gccatcatgg cagacaacag
     4021 cgacgacgag gacagtttcg cccccatcga ctggcttgcc gaccacgatt ccgaaccgag
     4081 ccgacaacta tcgaaacagg cgcattacgc cctgcaaaca gaaggtttac aaaacgcttt
     4141 ggcgcaactg gatgacagga gccgccgtat tgtggaaagc cgctggcttc aagacgacgg
     4201 cgggctgacc ctgcaccagc ttgctgcaga atacggcgtc tctgccgagc gcatccgcca
     4261 aatcgaagca aaagccatgc agaaactgcg tggtttcctg accgaagaag ccgaagcggt
     4321 ttgaaatata cgcaataaaa tacccgacaa attgttttgt cgggtatttt atttggtaaa
     4381 catcaatgcg gtttgtgcgt cgtgccgtac acgattttat ccgtccaaac catcgcaatc
     4441 gccgaaatca aaaagcagac atgcaccaga cactgccgca tcagctgctt ttccgacaga
     4501 ttggcggaat tgatatagtg gattaacaaa aatcaggaca aggcggcgaa gccgcagaca
     4561 gtacaaat
//
LOCUS       DAWGNT010000146         4540 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.146, whole genome shotgun sequence.
ACCESSION   DAWGNT010000146 DAWGNT010000000
VERSION     DAWGNT010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4540
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.146"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(245..352)
                     /locus_tag="WHR98_001657"
                     /pseudo
     CDS             complement(245..352)
                     /locus_tag="WHR98_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            complement(398..1126)
                     /gene="pdxJ"
                     /locus_tag="WHR98_001658"
     CDS             complement(398..1126)
                     /gene="pdxJ"
                     /locus_tag="WHR98_001658"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEZ2308313.1"
                     /translation="MLLGVNIDHIATVRNARGTTYPSPVEAALVAETHGADLITMHLR
                     EDRRHIKDADVFAVKNAIRTRLNLEMALTEEMLENALKVMPEDVCIVPEKRQEITTEG
                     GLDVLAQQDKIAEFTKILTDAGIRVSLFIDADDRQIQAARDVGAPVVELHTGAYADAR
                     SHAEQIRQFERLQNGAHFASDLGLVVNAGHGLTIHNVTPIAQILAIRELNIGHSLISQ
                     ALFLGLPEAVRQMKEAMFRARLLP"
     gene            complement(1150..1941)
                     /gene="recO"
                     /locus_tag="WHR98_001659"
     CDS             complement(1150..1941)
                     /gene="recO"
                     /locus_tag="WHR98_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEZ2308314.1"
                     /translation="MSEHRVNHEPVFLLASSPWRESSLRVEAFSRRYGRVALLARSAR
                     KRQSELRGVLVSFVPVSASWYGSQELKTLHRAEWVGGWRQPQGRALFSGLYVNELVLK
                     LTAREDPMPELYDALAKVMEAVCREANHIADLRRFEWKLLNALGVAPDLHADGTGGDI
                     LADKTYRLMPEEAVMPVCRDTDALSHEAGAIVEGQSLIDLREGSFRTAESLQQALKIT
                     RLFIRHLLPEGLKSRQVLEQIRQFDRKETARETVPTSDGTASNAV"
     gene            complement(1975..3102)
                     /gene="pheA"
                     /locus_tag="WHR98_001660"
     CDS             complement(1975..3102)
                     /gene="pheA"
                     /locus_tag="WHR98_001660"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017629317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEZ2308315.1"
                     /translation="MLECTINYCSGEIMSQTIDELLLPHRNAIDTIDAEILRLLNERA
                     QHAHAIGELKGTGAVYRPEREVAVLRRIQDLNKGPLPDESVARLFREVMSECLAVERP
                     LTIAYLGPQGTFTQQAAIKHFGHAAHTMACPTIDNCFKQVETRQADYLVAPVENSTEG
                     SVGRTLDLLAVTALQACGEVVLRIHHNLLRKNNGSTEGIAKVFSHAQALAQCNDWLGR
                     HLPNAERIAVSSNAEAARLVAESDDGTVAAIAGRTAAEIYGLDMVAECIEDEPNNTTR
                     FLVMGHHETGASGSDKTSLAVSAPNRAGAVASLLQPLTESGISMTKFESRPSKSVLWE
                     YLFFIDIEGHRRDAQIQTALERLGERASFVKVIGSYPTAVL"
     gene            complement(3141..4373)
                     /locus_tag="WHR98_001661"
     CDS             complement(3141..4373)
                     /locus_tag="WHR98_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEZ2308316.1"
                     /translation="MPSAHYPEMSEKLMAVLMAMLVTLMPFSIDAYLPAIPEMAQSLG
                     ADVHRIEQSLSLFMFGTAFGQVVGGSVSDIKGRKPVALTGLAVYCLAVAAIVFASSAE
                     QLLNLRVVQAFGAGMTVVIVGAMVRDYYSGRKAAQMFALIGIILMVVPLVAPMVGALL
                     QGLGGWQAIFVFLAAYSLVLLGLVQYFLPKPAVGGKIGRDVFGLVAGRFKRVLKTRAA
                     MGYLFFQAFSFGSMFAFLTESSFVYQQLYRVTPHQYAWAFALNIITMMFFNRITAWRL
                     KTGAHPQSILLWGIVVQFAANLSQLAAVLFFGLPPFWLLVACVMFSVGTQGLVGANTQ
                     ACFMSYFKEEGGSANAVLGVFQSLIGAGVGMAATFLHDGSATVMAATMTASTSCGIAL
                     LWLCSHRAWKENEQSEYL"
BASE COUNT         1007 a         1309 c         1251 g          973 t
ORIGIN      
        1 ctatattaca taatcatcgc ctcaatattt aatatcccaa aatatagatt taaaaccatc
       61 gcctttgtgg tttgtcagca ttcctaattg agatagaaag tcaaataatt tcttgtttct
      121 ccggctgcca tcaagatggt ttagattaag acctcgaaca atacaatacc caatacgctg
      181 tactgtattg tgaatttctt ctatcaaact attattgttt gcagataaaa tatacttttg
      241 attcatatag tgaattaaat ttaaaccagt acggcgttgg cttgccttgc cgtactattt
      301 gtactgtctg cggcttcgcc gccttgtcct gatttaaatt taatccacta taacatatcc
      361 ctgtcgtgaa atgctgtctg aaagggtttg cctgccctta cggcagcagc cttgccctga
      421 acatcgcctc cttcatttgg cgcacggcct cgggcaatcc gaggaaaagt gcctgcgaaa
      481 tcagcgaatg cccgatgttc agttcgcgga tggcgaggat ttgggcgatg ggggtaacgt
      541 tgtgtatggt cagtccgtgt ccggcgttga cgaccaagcc caaatcgctg gcaaaatgcg
      601 cgccgttttg cagacgctcg aactgcctga tttgttcggc gtggctgcgc gcgtcggcat
      661 acgcgcctgt gtgcagctcg acaacgggcg cgccgacatc acgggcggct tggatttgcc
      721 tgtcgtcggc atcgataaac aaggacacgc gtatgcccgc gtcggtcagg attttggtga
      781 attcggcaat tttgtcttgt tgcgccaata cgtccaagcc gccttcggtc gtgatttcct
      841 gacgtttttc cggcacgatg cacacgtctt ccggcatcac tttaagcgcg ttttcgagca
      901 tttcttccgt caacgccatt tcaaggttca ggcgcgtgcg gatggcgttt ttgacagcaa
      961 acacgtccgc gtctttgatg tggcggcggt cttcgcgcag gtgcatggta atcaggtcgg
     1021 caccgtgcgt ttcggcaacc agtgccgcct ccacggggct gggataagtc gtgccgcgcg
     1081 cattgcggac ggtagcgatg tggtcgatgt tgacacctaa aagcataatc tttcctttta
     1141 tttctgcctt cagacggcat ttgaagccgt gccgtccgaa gtcgggacgg tttcccgggc
     1201 ggtttctttg cggtcaaact gccgtatctg ttccaacacc tgccgcgatt tcagcccctc
     1261 gggcaacagg tggcggataa aaagccgtgt gattttcaat gcctgttgca ggctttcggc
     1321 ggtgcggaaa ctgccttcgc gcaaatcgat caggctttgc ccttcgacaa ttgcgccggc
     1381 ctcgtgcgaa agcgcgtccg tgtcccggca tacgggcatg accgcctctt cgggcatcag
     1441 ccggtaggtt ttatccgcca aaatatcgcc gcccgtgccg tcggcgtgca aatcgggggc
     1501 aacgcccaag gcattgagca gcttccactc gaagcggcgc aaatcggcaa tgtggttggc
     1561 ttcacgacac accgcctcca tcacttttgc caacgcgtcg tacagttcgg gcatcgggtc
     1621 ttcgcgcgcg gtcagtttca acaccagttc gttcacatac agaccgctga acaacgccct
     1681 gccctgcggc tgccgccatc cgccgaccca ttcggcacgg tgcagggttt tgagttcctg
     1741 actgccgtac cacgacgcac tgacgggcac gaaggaaacc agcacgccgc gcaattcgct
     1801 ctgccgcttg cgcgcgcttc ttgccaaaag tgccacacgc ccgtaacggc ggctgaacgc
     1861 ttcgacccgc aggctgcttt cgcgccatgg cgaggaagcc aacaggaaga caggttcgtg
     1921 gttgactcgg tgttcggaca tcatgcctga aatgccgtct gaacgctgct gccgctacaa
     1981 aacggcggtc gggtacgaac cgatgacttt gacgaacgaa gcgcgttcgc ccaagcgttc
     2041 caatgccgtc tgaatctgcg cgtcccggcg gtgtccttcg atgtcgatga agaacaggta
     2101 ttcccacaaa acggatttac tcggacggct ctcaaacttg gtcatggaaa tacccgactc
     2161 agtcagcggt tgcagcagcg aggcaaccgc gcctgcccgg ttgggcgcgg aaacggccag
     2221 cgaagtcttg tcgctgccgc ttgcaccggt ttcgtgatgt cccatcacca agaagcgcgt
     2281 ggtgttgttc ggttcgtctt cgatgcactc ggcaaccata tcgagtccgt agatttccgc
     2341 cgccgtgcgt ccggcgatgg cggcaaccgt accgtcgtcc gattcggcaa ccagccttgc
     2401 ggcttcggca ttgctggaca cggcaatccg ttcggcgttg ggcaggtgtc tgcccaacca
     2461 gtcgttgcac tgcgccaacg cctgcgcgtg ggaaaagact ttggcaatgc cttcggtgct
     2521 gccgttgttt ttacgcaaaa ggttgtggtg gatgcgcaaa acgacttcgc cgcacgcctg
     2581 caacgcggta acggcaagca aatccaacgt gcgcccgacc gagccttcgg tcgagttttc
     2641 cacgggggcg accagatagt ctgcctgacg ggtttcaacc tgcttgaagc agttgtctat
     2701 ggtcggacac gccatggtgt gcgcggcgtg tccgaaatgc ttaatcgccg cctgctgggt
     2761 aaacgtgccc tgcggcccca gataggcgat ggtcagcggg cgttcgacgg cgagacactc
     2821 gctcatcact tcccgaaaca ggcgtgctac cgattcgtcg ggcagcgggc ctttgttcaa
     2881 atcctgaatg cggcgcaaca cggcgacttc gcgttcgggg cggtacactg cgcccgtgcc
     2941 tttcagctcg ccgatggcgt gggcgtgttg cgcacgttcg ttgagcaggc gcaggatttc
     3001 ggcatcgatg gtgtcgatgg cgttgcggtg gggaaggagg agttcgtcga tagtttggga
     3061 cataatttcg cctgaacagt aatttatcgt gcattctaac atcaaatgcc gtctgaaacg
     3121 gtttcagacg gcattttccg ttaaaggtat tcgctctgtt cgttttcctt ccacgcccgg
     3181 tgcgaacaca gccacagaag cgcaatgccg caagaggtgg acgcggtcat cgttgccgcc
     3241 atcacggttg ccgaaccgtc gtgcaagaag gtcgccgcca tacccacccc cgcgccgatt
     3301 aaggactgga acacgcccaa cacggcgttc gcgctgccgc cctcttcttt gaaataagac
     3361 ataaagcatg cctgcgtgtt tgcaccgacc aagccctgcg taccgacgga aaacatcacg
     3421 cacgcaacca gcagccaaaa cgggggcaac ccgaaaaaca gcacggcggc gagttgggac
     3481 aggttggcgg caaactggac gacaatcccc catagcagga tgctttgcgg atgcgcgccg
     3541 gttttgagcc gccacgcggt aatgcggttg aaaaacatca tcgtgatgat gttgagtgca
     3601 aacgcccaag cgtattgatg aggcgtaaca cggtaaagct gctggtacac gaaggaagat
     3661 tcggtcagaa aggcgaacat cgaaccgaag ctgaatgcct gaaaaaacag ataacccatc
     3721 gcggcacggg ttttcaatac gcgtttgaac cgcccagcca ccagcccgaa cacatcccgt
     3781 ccgattttgc cgccgacggc aggcttgggc aggaaatact gcaccaaacc gagcagcacc
     3841 agcgaatacg ccgccagaaa aacaaaaatc gcctgccagc cacccaagcc ctgcaacagt
     3901 gcgccgacca tgggtgcgac cagcggcaca accatcaaaa tgatgccgat aagggcaaac
     3961 atctgggcgg ctttgcgtcc ggaataataa tcgcgcacca ttgcgccgac gatgaccaca
     4021 gtcatgcccg caccgaatgc ctgcacgacg cgcaggttga ggagctgttc ggcactcgaa
     4081 gcaaatacga tggcggcaac ggcaaggcag tagacggcca gtccggtcag cgcgacgggt
     4141 ttgcgccctt tgatgtcgga caccgaaccg ccgaccacct gtccgaacgc cgtgccgaac
     4201 ataaacaaac tcaggctctg ttcgatgcgg tggacatccg cacccagcga ctgcgccatt
     4261 tcgggaatcg cgggcaggta ggcatcgatg gaaaacggca tcagcgtaac cagcatcgcc
     4321 atcaaaaccg ccatcagttt ttcgctcatt tcaggataat gagcagaagg cataaattct
     4381 cgtccgattc gcaaacaaac cgcccggcgg cggaaaacac aatacgcgga aacggaaaat
     4441 tttaacacac cggcacaaac aggcggcaac aaaagccccg gcaaaaccgg acgaaccgga
     4501 acgatatagt ggattaacaa aaaccagtac agcgttgcct
//
LOCUS       DAWGNT010000147         4521 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.147, whole genome shotgun sequence.
ACCESSION   DAWGNT010000147 DAWGNT010000000
VERSION     DAWGNT010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4521
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.147"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(1022..1792)
                     /gene="xth"
                     /locus_tag="WHR98_001662"
     CDS             complement(1022..1792)
                     /gene="xth"
                     /locus_tag="WHR98_001662"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEZ2308317.1"
                     /translation="MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPA
                     AALQMMGWHCVWSGQKTYNGVAIVSRNAPEDVHIGLPALPDDPQRRVIAATVGGVRVI
                     NVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPE
                     KWHEKIHCSSVERQWFKNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDH
                     ILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW"
     gene            complement(1852..2133)
                     /locus_tag="WHR98_001663"
     CDS             complement(1852..2133)
                     /locus_tag="WHR98_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEZ2308318.1"
                     /translation="MNTIPLHTILKLMAHPERMAILLQLLDGDCNIAELSESLSMPAT
                     AVSNHLSRLRVEGLVDFTRYHRIIEYRLISEDAATILRTIRDLENKRAV"
     gene            complement(2225..2511)
                     /locus_tag="WHR98_001664"
                     /pseudo
     CDS             complement(2225..2511)
                     /locus_tag="WHR98_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009346305.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2539..3420)
                     /gene="nadC"
                     /locus_tag="WHR98_001665"
     CDS             complement(2539..3420)
                     /gene="nadC"
                     /locus_tag="WHR98_001665"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003689485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HEZ2308319.1"
                     /translation="MPSENTLFPLPDTLLRPMVEQALSEDLGRRGDITSAAVIAPEKT
                     AKLFLVSREDGVIAGMDLARLAFQTMDPSVRFQAEIRDGQVVRAGQTLAAVEGNARAL
                     LAAERTALNYLTHLSGIATATARAVAEVAEYGTDIVCSRKTIPLLRVLQKYAVRAGGG
                     VNHRMGLDDAVLIKDNHLAYCGSIAQAVRQAKQAVGALTCVEIEVDTLAQLDEAIAAG
                     AERILLDNMDDETLKEAANRCHTQTAHPHTVYCEASGGIGFDRLKRVAQTGVDGIALG
                     YLTHSSRSLDIGLDFLA"
     gene            complement(3495..4433)
                     /locus_tag="WHR98_001666"
     CDS             complement(3495..4433)
                     /locus_tag="WHR98_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308320.1"
                     /translation="MDAYPEAEAPPQSIVELVPVLIAVTDGGLRVLTVAQGTLLPNGP
                     LSPLRNSLQAGVKLWVAKQTSQPMGYVEQLYTFVDTHRRNEYGMPVLYVSYLGLVREA
                     ADSILHPDAKWQDCYGYFPWEDLRTDGGQRDAVVGRLRIWANSADTEEVRQMRLKRIH
                     LCWGVEPENWSEEYVLQRYEMLYESGLIVEAAEPQANFDFALTGQPMRHDHRRVLATA
                     LSRLRAKIKYRPVIFELMPPEFTLLQLQNSVEAISGRLLHKQNFRRQIQQQNLIEPSD
                     TGVSGSKGRPAQLCRFRDDVLPDRLISDIGLPLGSR"
BASE COUNT         1055 a         1132 c         1203 g         1131 t
ORIGIN      
        1 tgaaactgat gcagatatag tggattaaca aaaatcagga caaggcgacg aagccgcaga
       61 cagtacaaat agtacggcaa cgctgtactg gtttaaattt aatccactat attttgtaat
      121 agctgccatt atgcctacta ggatatatac cttctatata atccttattt aaataaaaac
      181 ccttataaaa atctgtgtta tctgtcggga ttgaaaaaaa gattttatct ttctcatcag
      241 gtttatattt gctatcaata tcaaaaagag aataaggatt acaatgagtt cgacatacta
      301 ggtaaaaatt tatatcttgg atcatgaaat attcgatatt tatcaggatc gaaagatgct
      361 aaaaattcat caatatcggt actggatatt ttgtcatcac taataaacat cgctagagat
      421 gggcgacttt gattttccat ttgttgatta gtaaaggata taaatactaa cttgccattg
      481 tcaaaccaca tagatttata tagtggatta aatttaaacc agtacgtcgt tgcctcgcct
      541 tgccgtacta tttgtactgt ctgcggcttc gtcgccttgt cctgattttt gttaatccac
      601 tatagttatt gcctttggga gaatcaattc tgacagcaca taacataggt tcatctttac
      661 agtcgttata ttgggtttca tcaaactcaa ctgcacagca caataaagac aataggaaaa
      721 aaaggagatt aatttattac tatacataag gcagcctgat tattcattct aaaataaatc
      781 cggttttcaa tatttgattt tattccagat tatatacaca ataaatttta ccgctccaaa
      841 atctgatatt aaccctatgg atttcataaa ttcttcagaa aaataggctg tgcttgatca
      901 atccgccgac tccggctgtt tgtcagggaa aggcaattat ttttcggtca ggcagaaagt
      961 tatcctatcg aatcacttga agatatgaat gcttgtcaac gccatatcaa aacacggtct
     1021 tttaccaatc gaattctgcc gtcaccggcg cgtggtcgct cggacgctcc agcgcgcgcg
     1081 tctccaaatc aacgcggaca tccttcaacg ccgccgccat cgcaggcgac accaaaatat
     1141 ggtcgatacg caggcccagt ttgcgttgga acatcgcgcc gcgatagtcg aaccaggtat
     1201 agaacgcgcc ttcgggatgg acttggcgca ggctgtcggt cagtcccaaa tccagcaggt
     1261 ttttgaacca ctgccgttcg acggacgaac agtggatttt ttcgtgccat ttttcagggt
     1321 cgtaacagtc cgcatcggca ggcgcgatat tgaaatcgcc cagtagcacc agtttgccgt
     1381 agcgggtcat ttcatcgcgg acaaactccg tcagtgcggc aaaccattgt tctttatatt
     1441 tgaatttcgg gctgtcgagg gcttcgccgt tgacgcaata gacattgatg acgcgcacac
     1501 cgccgacggt tgccgcaatc acgcgccgtt gcggatcgtc cggcagcgcg ggcagcccga
     1561 tatgcacgtc ttccggcgcg ttgcggctga cgattgccac gccgttgtag gttttctgcc
     1621 cgctccaaac acagtgccag cccatcattt gcaaagcggc ggccggaaat ttgtcctgat
     1681 cgagtttgag ttcctgcaaa accaaaatat cgggcggatt gtcggcaagc aggttttgca
     1741 cctgcggcag ccgcacattg agcgaattga cgttccaagt ggtgattttc ataacatttc
     1801 cgaaaaatgc cgtctgaaac gttcagacgg caaaaggaaa ggattttaac actataccgc
     1861 gcgtttgttt tccaaatcgc ggattgtccg cagaatcgtt gccgcgtctt cggaaatcag
     1921 gcggtattcg ataatgcggt ggtaacgcgt aaagtccacc agaccttcca cgcgcagtcg
     1981 gctcaaatgg ttggaaaccg ctgtcgcagg catggacagg gattcggaca gctcggcaat
     2041 attgcaatcg ccgtccaaca gttggagcag tatcgccata cgttcgggat gcgccataag
     2101 tttgagtatg gtgtggagcg gtattgtgtt catcggtatt cctaaaacct tttccgcccg
     2161 ccaagcggat tgacgggcgg cagatatgga tgattgtgat tatctttata aattatatta
     2221 taaatcaatt atttatatat gattgtacag gattgtatgt tccttttacc actatttttg
     2281 caaacacgcg taaaggcggg ctttcagaca gcataaaact gccgcgcccg tcctttcccc
     2341 tgccctgccg atgcctccgc gctgtcgggc aaacaaaata cctgcctgaa acgctgtttt
     2401 ttctaaagca tcacgacctt cacgaaaaat gccgtctgaa gaatatttca gacggcattt
     2461 cctccttgag gcaataaccg gattacggtt aggcggttcc ttgtctgaca tatcagacaa
     2521 ctgccgacac cctaaaactc atgccaagaa atccaaacct atgtccaacg aacggctgct
     2581 gtgggtcaga tagccgagag cgatgccgtc cacgccggtt tgcgccacgc gcttcagtcg
     2641 gtcgaagccg atgccgcccg atgcttcgca atagacggtg tgggggtggg cggtttgcgt
     2701 gtggcagcgg tttgccgctt ctttcagggt ttcgtcgtcc atgttgtcca gcaaaatccg
     2761 ttccgcgccc gctgcgatgg cttcgtccag ttgtgccaac gtgtccactt cgatttccac
     2821 gcaggtcaat gctccgaccg cctgttttgc ctgccgaacg gcttgggcga tgctgccgca
     2881 ataggcgagg tggttgtctt tgatgagcac ggcgtcgtcc aagcccatgc ggtggttcac
     2941 gccgccgcct gccctgacgg cgtatttttg caggacgcgc agcaggggga tggttttgcg
     3001 gctgcacacg atgtctgtac cgtattcggc gacttcggca acggcacgcg cggtggcggt
     3061 ggcgatgccg cttaagtgcg tgaggtagtt gagcgcggtg cgttcggcgg cgagcagcgc
     3121 gcgggcgttg ccttcgacgg cggcaagcgt ctgacctgcg cggacgactt gcccgtctcg
     3181 gatttcggct tggaagcgaa cggacggatc catcgtctga aaggcgaggc gcgccaagtc
     3241 catgccggcg ataacgccgt cttcgcggct gacgaggaag agtttggcgg ttttttcggg
     3301 ggcgataacg gcggcggacg taatatcgcc gcgcctgccc aaatcttcgc tcaaggcttg
     3361 ttccaccatg gggcgcaaca gggtgtcggg cagggggaag agggtgtttt cagacggcat
     3421 ggggtttcct ttgttgaaaa agattgatgt tgcaccgatg ggcaaaactt cgtttgatgt
     3481 cgtctgaaaa cgggctaacg gctgcccagc ggcaatccga tgtccgaaat cagcctgtcg
     3541 ggcaggacgt cgtcgcggaa gcggcaaagc tgcgcgggac ggcctttgct gcccgatacg
     3601 ccggtatccg acggctcgat aaggttttgc tgctgaatct ggcggcggaa gttttgcttg
     3661 tgcagcaatc tgccgctgat ggcttcgacg ctgttttgca gttgcagcaa cgtgaattcg
     3721 ggcggcatca gttcgaaaat cacggggcgg tatttgattt tggcgcgcag gcgggacagg
     3781 gcggtcgcca atacgcggcg gtggtcgtgg cgcatgggct gccctgtgag cgcgaaatcg
     3841 aagtttgcct gcggctcggc ggcttccact atcaggccgc tttcatacag catttcatag
     3901 cgttgcaaaa cgtattcttc cgaccagttt tccggttcga ccccccaaca caaatgaatg
     3961 cgcttgagcc gcatttgacg cacttcctcc gtgtccgccg agtttgccca aatgcgcagt
     4021 cggccgacga cggcgtcgcg ctgtccgccg tcggtgcgca agtcttccca cgggaaatag
     4081 ccgtagcagt cctgccattt cgcatccggg tgcaggatgc tgtcggctgc ctcgcgcacc
     4141 agccccaaat agctgacgta caagacgggc atgccgtatt cgttgcggcg gtgggtatcg
     4201 acaaaggtgt aaagctgttc cacatagccc ataggctgcg aagtctgctt ggcaacccac
     4261 agcttcacgc ccgcctgcag ggaattgcgc agaggggaga gcgggccgtt gggcaggagc
     4321 gtgccttggg cgacggttaa tacccgcagg ccgccgtcgg taacagcaat caatacggga
     4381 accagctcga cgatgctttg cggcggggct tcggcttcgg ggtaggcatc catgctcggc
     4441 tttctgcggg tggaaaaggc tttattgtat agtggattaa caaaaatcag gacaaggcga
     4501 cgaagccgca gacagtacaa g
//
LOCUS       DAWGNT010000148         4445 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.148, whole genome shotgun sequence.
ACCESSION   DAWGNT010000148 DAWGNT010000000
VERSION     DAWGNT010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4445
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.148"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(63..1205)
                     /locus_tag="WHR98_001667"
     CDS             complement(63..1205)
                     /locus_tag="WHR98_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HEZ2308321.1"
                     /translation="MNTLYTLFATCPRGLETVLSQELGSLGCTDVQAFDGGVSCRGGL
                     EQVYAANLHSRTASRILLRLTKGTYRNERDIYKLAKNINWFNWFTLQQTFKVKVEAKR
                     ANVKSIQFVGLTVKDAVCDAFRDIYDARPSVDKAAPDVRIHAFLDERNVEIFIDTSGE
                     ALFKRGYRLDTGEAPLRENLAAGLLLSAGYDGTQPFQDPFCGSGTIAIEAAWIAARRA
                     PGMMRRFGFEKLQNFDKTLWSDLRRRAEAQVKPAFAPISGSDSDRRIIQTALANARSA
                     GVDDIVSFSVADAQSVRPNGENGIMVSNPPYGVRLEEVRALQALYPQLGTWLKKYYAG
                     WLAAMFTGDREMPKFMRLSPKRKIPLYNGNLDCRLFLIDMVQGSNR"
     gene            complement(1254..1676)
                     /locus_tag="WHR98_001668"
     CDS             complement(1254..1676)
                     /locus_tag="WHR98_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308322.1"
                     /translation="MNKNRKLLLAALLLIAFAAVKLVLLQWWQAQQPQAVAAQCDLTE
                     GCTLPDGSRVRAAAVSTKKPFDIYIEHAPAGTEQVSISFSMKNMDMGFNRYMFERQPS
                     GTWQAVRIRLPICVEGRRDFTADITIGSRTFQTAFTAE"
     gene            complement(1669..2478)
                     /locus_tag="WHR98_001669"
     CDS             complement(1669..2478)
                     /locus_tag="WHR98_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003701594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEZ2308323.1"
                     /translation="MIQDTRPLIRVVAGILLNRDGDYLLSSRPEGKPYAGYWEFAGGK
                     VEAGETDFQALQREFEEELGIRILAATPWLTKIHSYEHARVCLKFLWVNPGQWTGEPQ
                     SREGQEWSWQKAGDFTVAPMLPANGALLRSLSVPRRLYGSLKTGLHGENSMGAYRVLP
                     LGSAEGSGANVLMEAAQWQDRPEHADSVWMVVQTREQWRRAQEKGADAVVWRVCDDVQ
                     AQEAAEALRQGVSVPLVLAANGQTVARYGKLWLGLGAHVVVRDETIGKNHE"
     gene            complement(2560..2937)
                     /locus_tag="WHR98_001670"
     CDS             complement(2560..2937)
                     /locus_tag="WHR98_001670"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEZ2308324.1"
                     /translation="MIYGIGTDIVSLKRIIRLNKKFGQAFAGRILTPEELLEFPQAGK
                     PVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGIGHDALGKPEFFYGPALSKWLEEQG
                     IIRVSLSMSDEEDTVLAFVIAEK"
     gene            complement(3137..3904)
                     /locus_tag="WHR98_001671"
     CDS             complement(3137..3904)
                     /locus_tag="WHR98_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013107841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEZ2308325.1"
                     /translation="MQEIMQSIVFVAAAILHGITGMGFPMLGTTALAFNMPLSKVVAL
                     VALPSLLMSLLVLCSNNKKGFWQEIVYYLKTYKLLAIGSVVGSILGVKLLLILPVSWL
                     LLLMAIITLYYSVNGILNVCAKAKNIQVVANNKNMVLFGFLAGIIGGSTNAMSPILLI
                     FLLSETENKNRIVKSSNLCYLLAKIVQIYMLRDQYWLLNKSEYGLIFLLSVLSVIGLY
                     VGIRLRTKISPNFFKMLIFIVLLVLALKIGHSGLIKL"
     gene            complement(3914..>4445)
                     /locus_tag="WHR98_001672"
     CDS             complement(3914..>4445)
                     /locus_tag="WHR98_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEZ2308326.1"
                     /translation="DITFSEDVGECPLHSDSSFSENPESYLVMYVVKSANDGGNSLFL
                     SSSDIVNQLSKTETGKKHLKTLTGNLYPFKTPASFDKKQGVRWGNILSVNTQMIRFRS
                     DCIYKGIEENRNKVSKEMVLALDYLVNAIKNASDIQEFSAQDDDLIIIDNVNGLHART
                     DYTDKNRHYIRARITV"
BASE COUNT         1100 a         1109 c         1079 g         1157 t
ORIGIN      
        1 tcggccggat attaaaaaaa gccgtctgaa catttttcag acggcatttt tgtacacttt
       61 cctcaacggt tcgatccctg caccatatca atcaggaaca ggcggcaatc gaggttgccg
      121 ttataaagcg gaattttgcg ttttggcgac aggcgcatga atttgggcat ttcccgatct
      181 ccggtaaaca ttgccgccaa ccagcctgcg taatatttct tcaaccacgt ccccaactgc
      241 ggataaagcg cctgcaaggc gcggacttcc tcaaggcgca cgccgtaggg cggattggac
      301 accataatgc cgttttcgcc gttcggacgg acggattgcg cgtcggcaac gctgaaggaa
      361 acgatgtcgt ccaccccggc actgcgtgcg ttggccaatg ccgtctgaat gatgcggcgg
      421 tcgctgtcgc tgcccgaaat cggtgcaaaa gccggtttaa cctgcgcttc ggcacggcgg
      481 cgcaaatccg accacagcgt tttatcgaaa ttttgcagtt tttcaaaacc gaaacggcgc
      541 atcatacccg gcgcgcggcg ggcggcaatc caagcggctt cgatagcaat cgtgccgctg
      601 ccgcaaaacg ggtcttgaaa cggctgcgtg ccgtcgtagc ctgccgagag cagcaatccg
      661 gcggcaaggt tttcgcgcag cggggcttcg ccggtatcga gacggtagcc gcgtttgaac
      721 agggcttcgc ccgaagtgtc gatgaagatt tcgacattgc gttcgtccaa aaaggcgtgg
      781 atgcgaacat cgggcgcggc tttgtccacg ctcggacgtg cgtcgtaaat gtcgcggaaa
      841 gcgtcgcaga cggcatcttt gacggtcagt ccgacaaatt ggatgctctt aacgttggca
      901 cgctttgcct cgactttgac tttgaacgtc tgctgtaaag taaaccaatt aaaccagttg
      961 atatttttgg cgagtttgta gatgtcgcgc tcattgcggt atgtcccttt ggtcaggcgc
     1021 agcaggatac ggctggcagt acgcgaatgc aggttggcgg cgtaaacctg ttccaatccg
     1081 ccgcggcagg aaacgccgcc gtcaaacgct tgaacatcgg tacagccgag gcttccgagt
     1141 tcttgagata aaacggtttc caagccgcgc gggcaggtgg cgaaaagtgt atataaagta
     1201 ttcataacgt gtcctttccg gacggatgtt ccggcaatgg cggattgaaa ggtttattcg
     1261 gcggtaaatg ccgtctgaaa tgtccggctg ccgattgtaa tgtccgccgt aaaatcgcgc
     1321 ctgccttcga cacagatggg caggcggatg cgtactgcct gccaagtccc cgacggttgc
     1381 cgctcgaaca tatagcggtt gaaacccata tccatatttt tcatactgaa gctgatgctg
     1441 acctgttccg tgccggcggg cgcgtgttcg atataaatat caaacggttt tttggttgaa
     1501 acggcggcgg cgcggacgcg gcttccgtcc ggcagcgtgc aaccctcggt caaatcgcat
     1561 tgcgccgcca cagcttgcgg ctgctgcgcc tgccaccatt gcaacaaaac gagcttgacg
     1621 gcggcaaagg caatcagcag cagtgcggca agcagtaatt tacggttttt attcatgatt
     1681 cttccctatt gtttcatccc ttaccaccac gtgcgccccc aatccgagcc atagttttcc
     1741 ataacgtgca accgtctgtc cgtttgctgc aagtacgagc ggcacggata cgccctgccg
     1801 cagggcttct gccgcctctt gtgcctgaac atcatcgcac acgcgccaaa cgaccgcatc
     1861 cgcgcccttt tcctgcgccc gccgccattg ttcgcgggtc tgcaccacca tccacacgct
     1921 gtcggcgtgt tcgggtctgt cctgccattg cgccgcctcc atcaaaacgt tcgcaccgct
     1981 tccctctgcc gaacccaaag gcaggacgcg gtacgcgccc atactgtttt ctccgtgcaa
     2041 acccgttttc aggctgccgt acaaacggcg cgggacggac agcgaacgca aaagcgcgcc
     2101 gttggcgggc agcatggggg caacggtaaa atcacccgcc ttctgccaag accattcctg
     2161 cccttcgcgg gattgcggtt cgcccgtcca ttggccgggg tttacccata ggaatttcag
     2221 gcagacgcgg gcgtgttcgt aggaatggat tttggtcagc caaggcgtgg cggcgaggat
     2281 gcggatgccg agttcttctt caaactcgcg ttgcaaggct tggaagtcgg tttcgcccgc
     2341 ttcgaccttg ccgccggcaa attcccaata tccggcatag ggtttgcctt cggggcgcga
     2401 gctgagcagg tagtcgccgt ctcggttgag caggatgccg gcaacgacgc ggataagggg
     2461 tcgggtgtct tgaatcatgg cgggtacgcg gttggtcggt cggagtgcaa atgagggacg
     2521 ggcaatgccg tcaacgggtt tgccgcattt cagacggcat tatttttcgg caatgacaaa
     2581 cgccaatacg gtgtcttctt cgtcgctcat gctgaggctg acgcggatga tgccttgttc
     2641 ctccagccat ttggacaggg cggggccgta gaaaaattcg ggcttgccca atgcgtcatg
     2701 cccgatgccg atgttgcgga aggaaaccgc gccgcgtatg cccgtaccga cggctttggc
     2761 gaaggcttct ttggcggcaa agcgtttggc gaggtagttg acgggtttgc ccgcttgcgg
     2821 aaattcaagc agctcttctg gagtgaggat gcgcccggca aacgcctgtc cgaatttttt
     2881 gtttaagcgg atgatgcgct tgagggaaac aatgtctgtg ccgatgccgt aaatcatatt
     2941 tgcgctcctt cgcccttggt tgcgggtagt gatgaatgtg atgatgaatg ccgtcaattt
     3001 cttggggcgt taaaatggcg tgaatatcca cttttggggt tttgtcggta acaattttca
     3061 ctgtaacctt ttgcatttga aattctaaaa catcgtgcca attatttaat aaggagttaa
     3121 ggcatttaat aatgaattaa agtttgatta aacccgaatg cccgattttc aaagccaata
     3181 ccaataaaac aataaaaatt aacattttaa aaaaatttgg gctaatctta gtccttaacc
     3241 gaattccaac atacaatcca ataacagaca atacggacag taaaaatatt aaaccgtatt
     3301 cactcttatt taataaccaa tactggtctc ttagcatata tatttgaaca attttcgcca
     3361 aaagatagca tagattgctt gattttacga tacgattttt attttctgtt tcgctaagca
     3421 aaaatattaa caatatggga gacatggcat tggttgaacc gccgatgatg cctgccaaaa
     3481 acccaaaaag aaccatattc ttattattgg caactacttg aatatttttt gcttttgcac
     3541 atacatttaa aataccattg acagaataat acaatgtaat gattgccatc agtaaaagca
     3601 gccaagacac tggaagtatc aaaagcaact tcacccccaa aatgctgcca acgacgctgc
     3661 cgatagcaag caatttatag gtttttaaat aataaacaat ctcttgccaa aaaccttttt
     3721 tgttattgct gcatagaacc aacaagctca ttaacaggct tggtaatgcc accaaggcaa
     3781 caaccttaga caatggcatg ttaaaagcca atgcggttgt accgagcatc ggaaatccca
     3841 tgcctgtaat tccgtgcagt attgcggcag caacaaaaac gatagattgc attatttctt
     3901 gcataaccgt cctttataca gtaattcttg ctctaatata atgcctgttt ttatccgtat
     3961 aatcagttct ggcatgcaaa ccattgacat tgtcaataat aatcaaatca tcatcttgtg
     4021 cagaaaattc ttgaatatca ctcgcatttt ttatagcatt tacaagataa tcaagtgcaa
     4081 gtaccatttc ctttgatact ttatttctat tttcttcaat acctttatag atacaatcac
     4141 ttctaaatct aatcatttga gtattgaccg ataagatatt accccatctc acaccttgtt
     4201 ttttatcaaa tgatgctggt gttttaaatg gatataaatt gcccgttaat gtttttaagt
     4261 gttttttacc ggtttctgtt ttagataact gattgacaat atctgatgaa cttaaaaata
     4321 gggaattacc tccatcattg gctgatttta ctacatacat aaccaaataa ctttccgggt
     4381 tttcactaaa agatgaatca ctatgaagtg gacattctcc aacatcttcc gagaaagtta
     4441 tatca
//
LOCUS       DAWGNT010000149         4369 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.149, whole genome shotgun sequence.
ACCESSION   DAWGNT010000149 DAWGNT010000000
VERSION     DAWGNT010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4369
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.149"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(69..2045)
                     /locus_tag="WHR98_001673"
     CDS             complement(69..2045)
                     /locus_tag="WHR98_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002228904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEZ2308327.1"
                     /translation="MNEFSLAPIVIVLLVSVITVILCRKFNIPSMLGYLLVGFLAGPG
                     MLSLIPKSHATDYLGEIGIVFLMFSIGLEFSLPKLRAMRRLVFGLGGLQVGVTMLSVM
                     GILMLTGVPFNWAFAVSGALAMSSTAIVSRILSEKTELGQPHGQMAMGVLLMQDIAVV
                     PLMILIPALAGGGDGNIWAALGLAFAKMLLTLGLLFFVGSKIMSRWFRMVAKRKSSEL
                     FMINVLLVTLGVAYLTELEGLSMALGAFVAGMLLSETEYRFQVEDDIRPFRDILLGFF
                     FITVGMKLDIQALIGGWRQVLMLLAMLLVLKALVVFAIAFKMKHSVGDSLKTALYLAQ
                     GGEFGFVMLAIAGQLDMVSPEWEQAATAAVLLSMIIAPFLLGGSDALVGRLVKSSWDM
                     KSLDLHSMLVETMSKSDHVLIVGFGRGGQTVGRVLAQEDIPYFALDLDIARVQVARSA
                     GEPVSFGDAKRREVLEAAGLGRAKMVVVTLNNMHETQHVLDNVLSMYPNMPVYVRATN
                     DDYVKTFTDIGAEEAVSDTKETGLVLAGYAMLGNGASYRHVYQTMANIRHSRYAALEG
                     LFVGSDDEAGFGENGETVRHAFPLAAEAYAVGKTVGTLPMAAYGIKLLFVRRRTGRIE
                     NPDASFTLKGGDVLVVAGKKEEIISFENWSLQGI"
     gene            2194..3033
                     /locus_tag="WHR98_001674"
     CDS             2194..3033
                     /locus_tag="WHR98_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfABCDGE type electron transport complex
                     subunit B"
                     /protein_id="HEZ2308328.1"
                     /translation="MTATAAAIDRLLPQTQCRECGYDGCLPYAQAVATGEAYNLCAPG
                     GETVIRDISALLGKPLVAPAKTQAKALARIDETACIGCTACIRACPADAIMGAGKLMH
                     TVIADECTGCGLCVAPCPVDCIHMQPVADTVLPRARRFSLSADSRFAAAEHARARYLK
                     RNERKQREADERKAMLAEREAAVRNARPQTPDTPKKPAFNPADLIAKAMAKAQTQQDR
                     LAAADNRKDYQAKQIAEARERAELRRAQRDMKYGSDSEKAAALEYLKQYKAKQEAAQN
                     TAS"
     gene            3233..4264
                     /gene="gap"
                     /locus_tag="WHR98_001675"
     CDS             3233..4264
                     /gene="gap"
                     /locus_tag="WHR98_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEZ2308329.1"
                     /translation="MGIKVAINGYGRIGRQVLRAIYDYQIQDQLQIVAVNASGSLETN
                     AHLTKFDTVHGRFEADVSHDGGNLIVNGDKIPFFSTRNPAELPWKELGVDLVMECTGA
                     FTSKEKAKIHLKSGAKKVLISAPGGDDVDATVVYGVNDSILTADMTVVSNASCTTNCL
                     SPVAKVLSESVGIVKGTMTTIHALTNDQTVTDVRHKDLRRARSGVENMIPTKTGAAKA
                     VGLVLPELKGRLDGLAIRVPTVNVSLVDLSFQAARDTTVEEINALMKAASEAGALKGV
                     LGYNTLPLVSMDFNHTTEASHFDATLTKVVDGNMVKVFAWYDNEWGFSCQMLNTARRM
                     FELEVRPLK"
BASE COUNT         1109 a         1463 c         1013 g          784 t
ORIGIN      
        1 tgcgatttgc gaaagcgtta ttaaaccaaa taaccggaaa tggcgcaagc cttatttcgg
       61 catttcattt atattccctg caaactccag ttttcaaaag agataatttc ttcttttttg
      121 cctgcgacca ccaacacgtc accgcctttc aatgtaaacg aggcatccgg gttttcaatc
      181 cggccggtgc ggcggcggac gaacaagagt ttgatgccgt aagccgccat cggaagcgtg
      241 ccgactgttt tgccgacggc gtatgcttct gcagccaaag gaaaggcgtg gcggacggtt
      301 tcgccatttt cgccgaatcc tgcctcatca tcactaccga caaacagtcc ctccaacgcg
      361 gcataacggc tgtggcggat atttgccatc gtctgataga cgtgccgata cgacgcgccg
      421 ttgcctaaca tcgcatagcc tgccagcacg agtccggttt ctttggtgtc cgacacggct
      481 tcttccgcac ctatatcggt aaacgttttc acataatcgt cgttggtggc gcgcacatat
      541 acgggcatat tgggatacat ggacagcaca ttgtctaaaa cgtgttgcgt ttcgtgcata
      601 ttgttgagcg taaccaccac cattttcgcc cgtcccagac cggcggcttc caatacttcc
      661 ctgcgtttcg catcgccgaa cgacaccggt tcgcccgcac ttctggcaac ctgcacccgc
      721 gcgatgtcca aatcgagcgc gaaatacgga atatcctctt gggcaaggac gcgtccgacc
      781 gtctgcccgc ccctgccgaa gccgacaatc agcacatggt cggacttgct catggtttct
      841 accagcatac tgtgcagatc gagcgacttc atgtcccagc ttgacttgac caaacgcccg
      901 accagcgcat cgctgccgcc caagaggaag ggcgcgataa tcatcgacag cagaaccgcc
      961 gccgtcgccg cctgttccca ttctggcgaa accatatcaa gctgcccggc aatggccagc
     1021 atcacgaagc cgaactcgcc gccttgcgcg agatacaaag ccgttttgag gctgtcgccg
     1081 accgaatgtt tcattttgaa ggcaatggca aacacaacca gtgccttcaa caccagcagc
     1141 attgccaaca gcatcaatac ctgccgccag ccgccgatca atgcctgaat gtccagcttc
     1201 atgccgaccg tgataaagaa aaagccgagc aaaatatcgc ggaacgggcg gatgtcgtct
     1261 tcgacttgga aacggtattc cgtttccgaa agcagcatgc cggcaacgaa tgcgcccaac
     1321 gccatagaca aaccttccag ctcagtcaga taagccacac ccaaggttac cagcagcaca
     1381 ttgatcataa agagttcgga cgatttgcgt tttgccacca tcctgaacca tcgcgacata
     1441 attttgctgc cgacgaaaaa cagcagcccc agcgtcagca gcatttttgc aaacgccaaa
     1501 cccaaggccg cccaaatatt tccgtcccct ccgcccgcca gcgcgggaat cagaatcatc
     1561 agcggcacga cggcgatgtc ctgcatcagc agcacgccca tcgccatctg accgtgcggc
     1621 tgccccaatt ccgtcttttc cgacaaaatc cggcttacaa tcgccgtgga cgacatcgcc
     1681 aacgcgcccg acacggcaaa cgcccaattg aacgggacgc ccgtcagcat cagtatgccc
     1741 attaccgaca gcatcgtaac gccgacctgc aaaccgccca gcccaaacac cagccgcctc
     1801 atcgccctca acttgggcag cgagaactcc aaaccgatgc tgaacatcag gaacacaatc
     1861 ccgatttcgc ccaaataatc cgtcgcatgg cttttcggaa tcaggctgag cataccgggc
     1921 cccgccaaaa agcccaccag caggtagccc agcatggagg gaatgttgaa cttgcggcac
     1981 aggatcaccg taatgaccga caccagcaaa acaatcacaa taggggcaag cgaaaattcg
     2041 ttcatagacc gtccgaacag gaaaatacag aaaaatgccg tctgaaacgg catacgccgc
     2101 cgcattataa caaaacaccg cgcaccatcc gaaacgggcg cggcatacaa ttctgctaaa
     2161 atacgccctt tcgattttga gccgcacacc gacatgaccg ccacagccgc cgccatagac
     2221 cgcctgcttc cccaaaccca atgccgcgaa tgcggctacg acggctgcct gccctacgca
     2281 caggcagtcg caacaggcga agcgtacaac ctctgcgccc cgggcggaga aaccgtcatt
     2341 cgggacattt ccgccctgct cggcaaaccc cttgtcgcac ctgccaaaac ccaagccaaa
     2401 gcactcgccc ggatagacga aaccgcctgt atcggctgca ccgcctgcat ccgcgcctgc
     2461 cctgccgatg ccattatggg cgcgggcaaa cttatgcaca ccgtcatcgc cgacgaatgc
     2521 accggctgcg gactctgcgt cgccccctgc cccgtcgact gcatccatat gcagcccgtt
     2581 gccgacaccg tcctgccccg cgcgcgccgc ttcagcctgt ccgccgacag ccgttttgcc
     2641 gccgccgaac acgcgcgcgc gcgctacctc aaacgcaacg aacgcaaaca gcgcgaagcc
     2701 gacgaacgca aggccatgct tgccgaacgc gaagccgccg tccgtaacgc gcgtccgcaa
     2761 acacccgaca caccgaaaaa accggcgttt aaccctgccg acctcatcgc caaagccatg
     2821 gcaaaagcgc aaacccaaca agaccgcctc gccgccgccg acaaccgcaa agactatcag
     2881 gcgaaacaga tagccgaagc ccgcgaacgc gccgagttgc gccgcgccca acgcgatatg
     2941 aaatacggca gcgacagcga aaaagccgcc gccctcgaat atctcaaaca atacaaagcc
     3001 aaacaggaag ccgcacagaa taccgcctcc tgacccttcc ctgatatgcc gtctgaaaac
     3061 cgtttcagac ggcattttat caagctctcc gtccgccgca cccgtgccgt ccgcatctta
     3121 ccgcccaccc ttccggccgc gccgttttca ataaaatatt aattacacgc cactacaaat
     3181 ttgctataat ccgccccgaa aatctaccca accctcaaca aaggaacgaa ccatgggcat
     3241 caaagtcgcc atcaacggct acggacgcat cggccgccag gttttgcgcg ccatctacga
     3301 ttatcagatt caagaccaac tccaaatcgt cgccgtcaac gccagcggca gccttgaaac
     3361 caacgcccat ctgaccaaat tcgacaccgt gcacggacgc tttgaagccg acgtatccca
     3421 cgacggcggc aacctcatcg tcaacggcga caaaatcccc ttcttctcga cccgcaaccc
     3481 tgccgaactg ccgtggaaag aactcggtgt cgatttggtc atggaatgca ccggcgcgtt
     3541 caccagcaaa gaaaaagcca aaatccacct caaaagcggc gcgaaaaaag tcctcatttc
     3601 cgcaccgggc ggcgacgatg tcgatgcaac cgtcgtatac ggcgtgaacg acagcatcct
     3661 gaccgccgac atgaccgtcg tttccaacgc ttcctgcacc accaactgcc tctcgccggt
     3721 tgccaaagtg ttgagcgaaa gcgtcggcat cgtcaaaggc acgatgacca ccatccacgc
     3781 gctgaccaac gaccaaaccg ttaccgacgt gcgccacaaa gacctgcgcc gcgcccgcag
     3841 cggcgtggaa aacatgattc cgaccaaaac cggcgcggca aaagccgtcg gtttggtgct
     3901 gcccgaattg aaaggcaggc tcgacgggct tgccatccgt gtgccgaccg tcaacgtatc
     3961 cctggtagat ttgagcttcc aagccgcgcg cgacaccaca gtcgaagaaa tcaacgcact
     4021 gatgaaagcc gcctcggaag caggcgcgct caaaggcgtt ttgggctaca acaccctgcc
     4081 attggtttcc atggacttca accacaccac cgaagccagc cacttcgacg ccacactgac
     4141 caaagtcgtc gacggcaata tggtcaaagt gttcgcgtgg tatgacaacg aatggggctt
     4201 cagctgtcaa atgctgaaca ctgcacgccg catgttcgaa cttgaagtgc gcccgctcaa
     4261 ataagcaata aaccgtcaaa caaaatgccg tctgaaaccc gatgttttca agttccagac
     4321 ggcatttttc atttttcacc gtgattttac ccggctgtcg tcatttcca
//
LOCUS       DAWGNT010000150         4368 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.150, whole genome shotgun sequence.
ACCESSION   DAWGNT010000150 DAWGNT010000000
VERSION     DAWGNT010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4368
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.150"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..106
                     /locus_tag="WHR98_001676"
     CDS             <1..106
                     /locus_tag="WHR98_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HEZ2308330.1"
                     /translation="PYGDTTAQNRPDFKQNNGKNPDVGNEVIRRRKGG"
     gene            110..1606
                     /gene="mafB"
                     /locus_tag="WHR98_001677"
     CDS             110..1606
                     /gene="mafB"
                     /locus_tag="WHR98_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 1"
                     /protein_id="HEZ2308331.1"
                     /translation="MKPLRRLTNLLAACAVAAAAFGQPALAADLAQDPFITDNAQRQH
                     YEPGGKYHLFGDPRGSVSDRTGQINVIQDYTHQMGNLLIQQANINGTIGYHTRFSGHG
                     HEEHAPFDNHAADSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGA
                     RDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANRKMFEHNAKL
                     DRWGNSMEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKF
                     AVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEALVNVLPFAKVKNLTKAAKPGKA
                     AVSGDFSAAYNTRTTRKVTTETEGLNRIRQNQKNSNIHEKNYGRDNPNHINVLSGNSI
                     QHILYGDEAGGGHLFPGKPGKTTFPQHWSASKITHEISDIVTSPKTQWYAQTGTGDKY
                     IAKGRPARWVSYETRDGIRIRTVYEPATGKVVTAFPDRTSNPKYNPVK"
     gene            1621..1851
                     /locus_tag="WHR98_001678"
     CDS             1621..1851
                     /locus_tag="WHR98_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MafI family immunity protein"
                     /protein_id="HEZ2308332.1"
                     /translation="MKTLDERIKNLGKSLEDRIDANLIDAALEYITFSERLLAFETLC
                     DYIEDFNIQLTEKESQEISFINKEFGIESTSD"
     gene            2000..2698
                     /locus_tag="WHR98_001679"
     CDS             2000..2698
                     /locus_tag="WHR98_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HINT domain-containing protein"
                     /protein_id="HEZ2308333.1"
                     /translation="MVKTADGYKAIAHIQAGDRVLSKDEASGETGYKPVTARYGNPYQ
                     ETVYIEISDGIGNNQTLISNRIHPFYSDGKWIKAEDLKAGSRLFAENGAEQTVQNITL
                     KQQPLKAYNLTVADWHTYFVKGSQAETEGVWVHNSCPPYKRPNNATTKAQRESVQGKP
                     CVECGKLAEKMIADHKKPLVVEYYETGTIDKSKMRAIESVQPQCPTCSAKQGGRLSQY
                     SKEQKRKLSNGNKK"
     gene            2682..3035
                     /locus_tag="WHR98_001680"
     CDS             2682..3035
                     /locus_tag="WHR98_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308334.1"
                     /translation="MGIKNEQIIICKKYNTEIYPVSDVSKIGVAENVKQTGLYPINGL
                     RHRPKGDTNGWYIWAGENFSYDKNFFLPLHTFHLQIWRPEIIPFLTLPPGYRFLIGEN
                     GYEDVWFDELLLNDN"
     gene            3025..3348
                     /locus_tag="WHR98_001681"
     CDS             3025..3348
                     /locus_tag="WHR98_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003676511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HEZ2308335.1"
                     /translation="MIIDKKSTSDVLKQYQELGFDLTKPMIIEFFIGGSQKNLQSIES
                     RLISYRQDFQISIEQDEFGEMWTCYCSVNIVPSLENILAIETTLFGIAQKNDCNYEGF
                     GSYGN"
     gene            3407..3634
                     /locus_tag="WHR98_001682"
     CDS             3407..3634
                     /locus_tag="WHR98_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308336.1"
                     /translation="MDIKFNTLGVILNGVNPEEKFIKIIDDQENTGGFLILLSSNDKF
                     SSFDSYDDWVENLEILKEYLQESHWIIKWVG"
     gene            3762..4304
                     /locus_tag="WHR98_001683"
     CDS             3762..4304
                     /locus_tag="WHR98_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="suppressor of fused domain protein"
                     /protein_id="HEZ2308337.1"
                     /translation="MINHIEKYTGTISHGSKSDSGSQYKLNIAAIPSSPNRDLKTYIT
                     LELSKHDLNYKSRFEILFVCSLKYDENQIFPFLRWLAETIIENKKILLRGQVVYLPRS
                     IVNSTKMDALYVSAPFYFDDDFQVCYGEHYNIVFFLLVPLYKQEAELVEKKGWNAFEQ
                     FLLNNEVDNLSDMNRKPFVW"
BASE COUNT         1426 a          968 c          924 g         1050 t
ORIGIN      
        1 cccctacggc gacacaaccg cccaaaaccg tcccgacttc aaacaaaaca acggtaaaaa
       61 ccccgatgtc ggcaacgaag tcatccgccg ccgcaaagga ggataaaccg tgaaaccgct
      121 gcgcagactg acaaacctcc ttgccgcctg cgccgtagcg gccgccgcct tcggacagcc
      181 cgccctcgca gcggacttgg cgcaagatcc gttcattacc gataacgccc aacggcagca
      241 ctacgaaccc ggaggcaaat accacctctt cggcgacccg cgcggcagcg tctccgaccg
      301 caccggtcaa atcaacgtca tccaagacta tacccaccag atgggcaacc tgctcatcca
      361 acaggcaaac atcaacggca caatcggcta ccacacccgc ttttccggac acggacacga
      421 agaacacgcc cccttcgaca accacgccgc cgacagcgca agcaaagaac aaggcaacgt
      481 tgacgaaggc tttaccgtgt accggctcaa ctgggaagga cacgaacatc atcccgccga
      541 tgcctacgac ggcccgaagg gcggcaatta ccccaaacct acgggtgcac gcgacgaata
      601 cacctatcac gtcaacggca cagcccgcag tatcaaactc aatccgaccg acacccgcag
      661 catccggcaa cgcatatccg acaactacaa caacctcggc agcaatttct ccgaccgcgc
      721 cgatgaagcc aacagaaaaa tgttcgagca caatgccaag ctcgaccgct ggggcaacag
      781 catggagttt atcaacggcg tcgccgccgg cgcgctcaac ccctttatca gcgcgggcga
      841 agccttgggc ataggcgaca tactgtacgg aacgcgctat gccatagaca aagccgcaat
      901 gcgcaacatc gcccccttgc ccgccgaggg caaattcgcc gtcatcggcg gcttgggcag
      961 cgtggcgggc tttgaaaaaa atacgcgcga agccgttgac cggtggatac aggaaaaccc
     1021 caatgccgcc gaaaccgtcg aagccctggt caacgtcctg ccgtttgcca aagtcaaaaa
     1081 cctgacaaag gcggcaaaac cggggaaggc tgcggttagc ggggattttt ctgctgcata
     1141 caatacaaga acaactagaa aagttactac agaaacagag gggttaaata gaatcagaca
     1201 gaaccagaaa aatagtaata tacatgagaa aaattatgga agagataatc ctaatcatat
     1261 taatgtttta tctggaaatt ctatacaaca tatactgtat ggagatgaag caggaggtgg
     1321 gcatcttttt cctggcaaac ctggtaagac aacattcccc caacattggt cagccagtaa
     1381 aataactcat gaaattagtg atatcgttac atccccaaaa acgcaatggt atgcacagac
     1441 tggaacaggc gacaaatata ttgctaaagg aagaccagcc aggtgggtat catatgaaac
     1501 gagagatgga attcgtatca gaacagttta tgaacctgca acaggaaaag tggtaactgc
     1561 attccccgat agaacctcta atcccaaata taaccctgta aaataatgag tatttgaaag
     1621 atgaaaacat tagacgaacg aataaaaaat ttaggaaaat ctcttgaaga tagaattgac
     1681 gctaatctaa ttgatgccgc actagagtac attacttttt cagaacgttt gctagctttt
     1741 gaaacgctat gtgattatat agaagatttc aatatccagc ttacggaaaa agaatcccaa
     1801 gaaatctctt ttattaataa ggaatttgga attgaaagta catcagatta ataaatatta
     1861 ggtcggttta aaaacccaac aatcaaaaag tcgtctgaaa ctgtgtttaa tttacagacg
     1921 acctttcctt catttgaagc aggatattga gaactgagtt cttcaaaaat cctacacctg
     1981 ctccttccac ggcagcacct tggtcaaaac ggcagacggc tacaaagcca ttgcccatat
     2041 tcaagccggc gaccgcgtcc tttccaagga cgaggcaagc ggagaaacgg gatacaaacc
     2101 cgttaccgcc cgatacggca atccgtatca agaaaccgtt tacattgaaa tttcagacgg
     2161 catcggcaac aaccaaaccc tgatttccaa ccgcatccac ccgttttatt cggacggcaa
     2221 atggattaaa gcggaagatt tgaaagcggg aagcaggctg tttgccgaaa acggtgcgga
     2281 gcagacggtt caaaacatta ccctcaaaca gcagccgctc aaagcctaca atctgaccgt
     2341 tgccgactgg catacttact tcgtcaaggg cagtcaggcg gaaacggaag gggtttgggt
     2401 tcataattct tgtccgccat ataagagacc aaataacgca acgacaaaag cgcaacgaga
     2461 aagtgtacaa ggaaaaccct gcgttgaatg cggtaaatta gccgaaaaaa tgattgccga
     2521 ccataaaaaa ccattagttg tcgagtatta tgaaacaggg acaattgaca aatctaagat
     2581 gagagcaatt gaatcagtac aaccgcaatg tccgacttgt tctgcaaaac aaggagggag
     2641 attaagccaa tattcaaaag aacagaaaag gaaactgagt aatgggaata aaaaatgaac
     2701 aaataataat ttgtaaaaaa tataatacag aaatatatcc tgtttccgat gtttcaaaaa
     2761 tcggtgttgc tgaaaatgtc aaacagacag gcctgtatcc gattaacggg ttaaggcacc
     2821 gtcccaaagg tgatactaac ggttggtata tctgggccgg tgaaaacttc tcctatgata
     2881 aaaatttttt cctgcccttg catacgttcc atttgcaaat atggcgaccc gaaatcatcc
     2941 cctttttaac acttccgccc ggttaccgtt ttttaattgg ggaaaacggt tatgaagatg
     3001 tatggtttga tgaattgcta ttaaatgata attgacaaaa aatctacttc agatgtactg
     3061 aaacaatatc aagaactagg gtttgatttg acaaaaccta tgataataga gttttttata
     3121 ggaggttctc aaaagaatct gcaatcaata gaaagccggc tcatttctta tcggcaagat
     3181 tttcaaatca gtattgaaca agatgaattc ggagaaatgt ggacttgcta ttgttccgtc
     3241 aatatcgtcc cttcccttga aaacatttta gctattgaaa ctacgttatt tggtattgca
     3301 caaaaaaatg attgtaatta tgaaggtttt ggttcgtatg ggaactaaca aaaagtgtag
     3361 gttgggttga aaaaaccata ttcccattaa agattagggt gtgtctatgg acataaaatt
     3421 caatactttg ggggttatcc tgaatggggt caatcctgaa gaaaaattca taaaaattat
     3481 tgatgatcag gaaaataccg ggggatttct gatactgtta tcttcaaatg acaaattctc
     3541 atcatttgac agttacgatg actgggtcga aaacttagaa atattaaaag aatacctgca
     3601 agaatctcat tggataataa agtgggtcgg atagtcggca aacgtagtcc gtctgaaacg
     3661 cttttacttt tcagacggac tttctatcaa tgggaacaag gcgttttgtc tcaatctggt
     3721 ctatgattat ttcgatacag tgatgggaag ctaagaaaaa tatgattaat catattgaaa
     3781 aatatacagg cactatttct catggctcga aaagtgattc gggaagtcag tacaaattaa
     3841 atatcgcagc tattccctct tcccctaaca gggatttaaa aacttatatt actttagagt
     3901 taagcaaaca tgatctgaat tataaaagca gatttgaaat actttttgta tgttctttaa
     3961 aatatgatga aaatcagatt ttcccatttt taagatggct ggcagaaacc atcattgaga
     4021 ataaaaaaat ccttcttcgg gggcaggttg tttatttgcc cagaagcatt gttaattcaa
     4081 caaaaatgga tgcactgtat gtttccgccc cattttattt cgacgatgat tttcaggtct
     4141 gttatggcga acactacaat atcgttttct ttttgcttgt cccgttgtat aaacaggaag
     4201 cagaattggt agaaaagaaa ggttggaatg cttttgagca gttcttgctg aataatgaag
     4261 ttgacaacct ttcggatatg aatcggaaac cgtttgtttg gtaagggctt tcttaaattt
     4321 gattaaaggt cgtctgaaat taagcttgtt tttcagacgg tctttcct
//
LOCUS       DAWGNT010000151         4354 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.151, whole genome shotgun sequence.
ACCESSION   DAWGNT010000151 DAWGNT010000000
VERSION     DAWGNT010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4354
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.151"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            124..1971
                     /locus_tag="WHR98_001684"
     CDS             124..1971
                     /locus_tag="WHR98_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017628941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEZ2308338.1"
                     /translation="MYLPSMKHSLPLLAALVLAACSSTHAPSSKTLADNIETADLSAS
                     VPTRPAEPEGKTLADYGGYPSALDAVKQKNDAVVAAYLENAGDSAMAENVRNEWLKSL
                     GARRQWTLFAQEYAKLKPEGRAQEVECYADSSRNDYTRAAELVKNTGKLPSGCTKLLE
                     QAAASGLLDGNNAWRRVRGLLAGRQTTDARNLAAALGSPFDGGTQGSREYALLNVIGK
                     EARKSPNAAALLSEMESGLSLEQRSFAWGVLGHYQSQNLNVPAALDYYGKVADRRQLT
                     DDQIEWYARAALRARRWDELASVISHMPEKLQKSPTWLYWLARSRAATGNTQEAEKLY
                     KQAAATGRNFYAVLAGEELGRKIDTRNNVPDAGKNSVLRMAEDGAVKRALVLFQNSRT
                     TGDAKMRRQAQAEWRFATRGFDEDKLLTAAQTAFDHGFYDMAVNSAERTDRKLNYTLR
                     YISPFKDTVIRHAQNVNVDPAWVYGLIRQESRFVIGAQSHVGAQGLMQVMPATAREIA
                     GKIGMDAAQLYTADGNIRMGTWYMADTKRRLQNNEVLATAGYNAGPGRARRWQADTPL
                     EGAVYAETIPFSETRDYVKKVMTNAAYYASLFGAPHIPLKQRMGIVPAR"
     gene            2260..2472
                     /locus_tag="WHR98_001685"
     CDS             2260..2472
                     /locus_tag="WHR98_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEZ2308339.1"
                     /translation="MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTE
                     RKRKKAAAVKRLQKRLRSQQLPPKMY"
     gene            2604..3050
                     /locus_tag="WHR98_001686"
     CDS             2604..3050
                     /locus_tag="WHR98_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010356294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEZ2308340.1"
                     /translation="MSLKIRLTEDMKTAMRAKDQVSLGTIRLINAAVKQFEVDERTEA
                     DDAKITAILTKMVKQRKDSAKIYTEAGRQDLADKENAEIEVLHRYLPQMLSAGEIRTA
                     VDAAVAETGAAGMADMGKVMGVLKTRLAGKADMGEVNKILKAVLTA"
     gene            complement(3098..3244)
                     /locus_tag="WHR98_001687"
     CDS             complement(3098..3244)
                     /locus_tag="WHR98_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308341.1"
                     /translation="MPSERNRVSDGILSDGAQTESVYRQNPFRCIETVLPLPIRYWDI
                     ENAV"
     gene            complement(3249..3641)
                     /locus_tag="WHR98_001688"
     CDS             complement(3249..3641)
                     /locus_tag="WHR98_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016670768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HEZ2308342.1"
                     /translation="MPTSTKPYILRALCEWCSDNSLTPHILVWVNEHTRVPMQYVRDN
                     EIMLNIGATATQNLQIDNDWISFSARFGGQAHDIWIPVGHVLSLFARETSEGMGFELE
                     EYRPDTPPENTPAETAPRPAKKGLKLVK"
     gene            complement(3713..4318)
                     /locus_tag="WHR98_001689"
     CDS             complement(3713..4318)
                     /locus_tag="WHR98_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HEZ2308343.1"
                     /translation="MMTLYSGITCPFSHRCRFVLYEKGMDFEIKDVDIYNKPEDLAVM
                     NPYNQVPVLVERDLVLHESNIINEYIDERFPHPQLMPGDPVMRGRGRLVLYRMEKELF
                     NHVQVLENPAATNKEQAKAREAIGNGLTMLAPSFSKSKYILGEDFSMIDVALAPLLWR
                     LDHYDVKLGKSAAPLLKYAERIFQREAFIEALTPAEKAMRK"
BASE COUNT         1058 a         1233 c         1200 g          863 t
ORIGIN      
        1 tatgtcggaa acattccaaa ggcggtgcag tttcggcata taattcgggc aaacgcctgt
       61 tcagacggca ttttgtcttt tccaaccctg accgttcagg gttccgattc ttaaggaaat
      121 ccgatgtacc taccctctat gaagcattcc ctgccgctgc tggcggccct ggtgcttgcc
      181 gcgtgttctt cgacacacgc gcccagcagc aagaccctgg cagacaatat agaaactgcc
      241 gatctttcgg caagcgttcc cacccgccct gccgaacccg aaggaaaaac gctggcagat
      301 tacggcggct acccgtccgc actggatgca gtgaaacaga aaaacgatgc cgtcgtcgcc
      361 gcctatttgg aaaacgccgg cgacagtgcg atggcggaaa atgtccgcaa cgagtggctg
      421 aagtctttgg gcgcacgcag acagtggacg ctgtttgcac aggaatatgc caaactcaaa
      481 cctgaagggc gcgcccaaga agtcgaatgc tacgccgatt cgagccgcaa cgactatacg
      541 cgtgccgccg aactggtcaa aaatacgggc aaactgcctt cgggctgcac caaactgttg
      601 gaacaggcag ccgcatccgg cttgttggac ggcaacaatg cctggaggcg cgtgcgcgga
      661 ctgctggccg gccgccaaac cacagacgca cgcaaccttg ccgccgcatt gggcagcccg
      721 tttgacggcg gtacacaagg ttcgcgcgaa tatgccctgt tgaacgtcat cggcaaagaa
      781 gcacgcaaat cgccgaatgc cgccgccctg ctgtccgaaa tggaaagcgg tttaagcctc
      841 gaacaacgca gtttcgcgtg gggcgtattg gggcattatc agtcgcaaaa cctcaatgtg
      901 cctgccgcct tggactatta cggcaaggtt gccgaccgcc gccaactgac cgacgaccaa
      961 atcgagtggt acgcccgcgc cgccttgcgc gcccgacgtt gggacgagct ggcttccgta
     1021 atctcgcata tgcccgaaaa actgcaaaaa agcccgacct ggctctactg gctggcacgc
     1081 agccgcgccg caacgggcaa cacgcaagag gcggaaaaac tttacaaaca ggcggcagca
     1141 acgggcagga atttttatgc ggtgctggca ggggaagagt tgggtcgcaa aatcgatacg
     1201 cgcaacaatg tgcccgatgc cggcaaaaac agcgtcctcc gtatggcgga agacggcgca
     1261 gtcaaacgcg cgctggtgct attccaaaac agccgaacca ccggcgatgc gaaaatgcgc
     1321 cgtcaggctc aggcggaatg gcgttttgcc acacgcggct ttgacgaaga caagctgctg
     1381 accgccgcgc aaaccgcgtt cgaccacggt ttttacgata tggcggtcaa cagcgcggaa
     1441 cgcaccgacc gcaaactcaa ctacaccttg cgctatattt cgccgtttaa agacacggta
     1501 atccgccacg cgcaaaatgt taatgtcgat ccggcttggg tttacggtct gattcgtcag
     1561 gaaagccgct tcgttatagg cgcgcaatcc cacgtaggcg cgcaggggct gatgcaggtt
     1621 atgcctgcca ccgcgcgcga aatcgccggc aaaatcggta tggatgccgc acaactttac
     1681 accgccgacg gcaatatccg tatggggacg tggtatatgg cggacaccaa acgccgcctg
     1741 caaaacaacg aagtcctcgc caccgcaggc tataacgccg gccccggcag ggcgcgccga
     1801 tggcaggcgg acacgcccct cgaaggcgcg gtatatgccg aaaccatccc gttttccgaa
     1861 acgcgcgact atgtcaaaaa agtgatgacc aatgccgcct actacgcctc cctcttcggc
     1921 gcgccgcaca tcccgctcaa acagcgtatg ggcattgttc ctgcacgctg acgtaccgat
     1981 gccgtctgaa acccgcccgg tctttcagac ggcattttta tcccgaacgg cattgacggc
     2041 gaaccataaa tataagacaa tccgaaaatt gtttttcctg ctttttcaag cagcttgaca
     2101 cggcacaagc cgacccgtta ggaggtgatg tttccgtcac ggcgcgtatc ccgccgccgc
     2161 aaggcacagc gatacggtaa accttcaaca ccgtccgccc taccctttcc accgatatga
     2221 tgggcagatg aaacaaccga atttattaaa ggaaataaaa tgcctgcaat ccgcgtaaaa
     2281 gagaatgaac catttgaagt cgctatgcgc cgtttcaaac gcgccgtaga aaaaaccggc
     2341 ctgctgaccg agctgcgcgc ccgcgaagcc tacgaaaaac cgactaccga acgcaaacgc
     2401 aaaaaagcgg cagccgtaaa acgcctgcaa aaacgcctgc gcagccaaca actgccaccc
     2461 aaaatgtact aaacgttcaa gtacagatta caggtcagcc ctgtgatatg aggacacacc
     2521 gcaagacctg ctctgcggtg tgttttgctt ttcagacggc atcgaaaccc gccgtttcca
     2581 tccgacatcc cagcgaggac attatgagcc tgaaaatccg ccttaccgaa gacatgaaaa
     2641 ccgcgatgcg cgccaaagac caagtttccc tcggcaccat ccgcctcatc aacgccgccg
     2701 tcaaacagtt tgaagtggac gaacgcaccg aagccgacga tgccaaaatc accgccatcc
     2761 tgaccaaaat ggtcaaacag cgcaaagaca gcgcgaaaat ctacactgaa gccggccgtc
     2821 aggatttggc agacaaagaa aacgccgaaa tcgaggtact gcaccgctac cttccccaaa
     2881 tgctctccgc cggggaaatc cgtactgcgg tcgatgccgc cgttgccgaa accggcgcgg
     2941 caggtatggc ggatatgggc aaagtgatgg gcgtattgaa aacccgactt gccggcaaag
     3001 ccgatatggg cgaagtcaac aaaatcctga aagccgtgct gaccgcctga ttgcccgaat
     3061 atcggacaaa atgccgtctg aagcccgtat cgcaggttca gacagcattt tcaatgtccc
     3121 aatatcgaat cggcaggggc aacacggttt cgatacaccg aaacgggttt tgccgataaa
     3181 cggattccgt ttgcgcccca tcggacaaaa tgccgtctga aacacgattc cgttcagacg
     3241 gcatagattt atttgaccaa tttcaagcct tttttggcgg gtcggggcgc ggtttcggca
     3301 ggggtgtttt caggcggcgt atcggggcgg tactcctcca attcaaaccc cataccttcg
     3361 ctggtctccc gtgcgaaaag gctgaggacg tgtccgacag gtatccatat atcgtgcgcc
     3421 tgtccgccga agcgggcgga aaagctgatc caatcgttgt cgatttgaag gttttgcgtg
     3481 gcggtcgcgc cgatgttgag cataatttcg ttgtcgcgga cgtactgcat ggggacgcgc
     3541 gtgtgttcgt tgacccaaac aaggatgtgc ggtgtgaggc tgttgtcgct gcaccattcg
     3601 cagagagcgc ggaggatgta gggtttggtt gaggtgggca tgatgggttc cgtgttgtac
     3661 gccaaaatag gaaaatgcct gcaaaacggc gggttttgca agcattccgg acttatttac
     3721 gcatggcttt ttcggcgggt gtcagtgctt cgataaaggc ttcgcgctgg aagatgcgct
     3781 cggcgtattt gagcagcggc gcggcacttt tgcccagttt gacatcgtag tggtcgagcc
     3841 gccacagcag cggagcaagg gcgacatcaa tcatagaaaa atcttcgccg aggatgtatt
     3901 tgcttttgct gaacgaaggg gcgagcatgg tcagaccgtt gccgatggct tcgcgcgctt
     3961 ttgcctgctc cttattggta gcggcggggt tttccaacac ttggacgtgg ttgaacaatt
     4021 ctttttccat acggtacagc accagccggc ccctgccgcg cataacggga tcgccgggca
     4081 taagctgcgg atgagggaag cgttcgtcga tgtattcgtt gatgatgttg gactcgtgca
     4141 gcaccaaatc gcgctcgacc agtacgggga cctggttgta cgggttcatg acggcgaggt
     4201 cttcgggttt gttgtaaata tcgacgtctt tgatttcaaa atccatacct ttttcgtaca
     4261 aaacgaagcg gcagcggtgg ctgaaggggc aggtaatgcc ggaatagagg gtcatcataa
     4321 taattgtcgc tcctgtgtga tgcctacaaa acgg
//
LOCUS       DAWGNT010000152         4287 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.152, whole genome shotgun sequence.
ACCESSION   DAWGNT010000152 DAWGNT010000000
VERSION     DAWGNT010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4287
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.152"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            565..2292
                     /gene="ilvB"
                     /locus_tag="WHR98_001690"
     CDS             565..2292
                     /gene="ilvB"
                     /locus_tag="WHR98_001690"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HEZ2308344.1"
                     /translation="MQLSGAQIIVQSLKAEGVEYVFGYPGGAVIEIYDALFQLNKFKH
                     ILTRHEQAAVHAADAYARVSGKVGVALVTSGPGVTNALTGIATAYTDSIPMVVISGQV
                     GNSLIGTDAFQEVDTVGITRPCVKHNFLVTDINELAETIKKAFQIAASGRPGPVVVDV
                     PKDVTQAMAKFSYPQEDIFIRSYQPVVQGHIGQIKKAVQMLASAKRPVVYFGGGVVLG
                     NASEELTRFVRMTGAPCTGTLMGLGAYPSSDRQFLGMLGMHGTYEANLAMQNADVVLA
                     VGARFDDRVVSVPSKFFEKAKKVIHIDVDPSSIAKRVKVDIPIVGDVKNVLSEMVALW
                     QKQESVPSEDALGKWWKTIEEWRSQDCLWFDNGSEIIKPQYVIQKLAEITGNSAIITS
                     DVGQHQMFAAQYYPFERPRQWLNSGGLGTMGVGLPYAIGAKLAAPDQDVFCITGDGSI
                     QMNIQELSTCFQYRIPVNVITLNNGYLGMVRQWQEIYYGGRESETYFDSLPDFVKLAE
                     AYGHIGIRVDKKSDVEGALLEALNQKDRLVFIDFLTDQKQNVMPMVGNGKGLDEMVLP
                     PHMRADGKA"
     gene            2303..2794
                     /gene="ilvN"
                     /locus_tag="WHR98_001691"
     CDS             2303..2794
                     /gene="ilvN"
                     /locus_tag="WHR98_001691"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEZ2308345.1"
                     /translation="MRHILSVLIENESGAMSRVVGLFSARDYNIDSLAVAPTEDKTLS
                     RMTIVTHGDEQVIEQITKQLNKLIEVIKVVDLNESRFVERELMLVKVRAAGKDRDEFL
                     RLTEIYRGSIIDVTDRSYTIEITGSTDKLDSFLETVGRAQILETVRTGAAGIGRGERI
                     LKI"
     gene            2861..3154
                     /locus_tag="WHR98_001692"
     CDS             2861..3154
                     /locus_tag="WHR98_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEZ2308346.1"
                     /translation="MSNIKIVALVTVKPEYTETLAAQFKELVKASRAEEGNISYDLHQ
                     EIGKPNRFVFVENWKSQAAIDEHNASAHFQAFVQSVDGKTEALEIVLMNEVAD"
     gene            3234..4247
                     /gene="ilvC"
                     /locus_tag="WHR98_001693"
     CDS             3234..4247
                     /gene="ilvC"
                     /locus_tag="WHR98_001693"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011239815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEZ2308347.1"
                     /translation="MQVYYDKDADLSLIKGKTVAIIGYGSQGHAHAANLKDSGVNVVI
                     GLRHGSSWKKAEAAGHVVKTVAEATKEADVVMLLLPDETMPAVYHAEVTANLKEGATL
                     AFAHGFNVHYNQIVPRADLDVIMVAPKGPGHTVRSEYKRGGGVPSLIAVYQDNSGKAK
                     DIALSYAAANGGTKGGVIETTFREETETDLFGEQAVLCGGVVELIKAGFETLTEAGYA
                     PEMAYFECLHEMKLIVDLIFEGGIANMNYSISNNAEYGEYVTGPEVVNASSKEAMRNA
                     LKRIQTGEYAKMFIQEGNVNYASMTARRRLNADHQVEKVGAQLRAMMPWITANKLVDQ
                     DKN"
BASE COUNT         1116 a         1029 c         1077 g         1065 t
ORIGIN      
        1 tcctgatttt tgttaatcca ctatacaatc aatatattaa gtcgttgtta gccctcttgg
       61 ttctgtcaat gccgtccaat acagtccggt gcaatgagcc attttcagga agtatggttg
      121 ggaatatttt tgatatatca aaaataaaat caagttcaat caatatcccg agtctttatt
      181 gggatgaaac cctgtaaatt ttacaattct tgatatcgaa gaagggtttt tcacatctgc
      241 ccctcctaca caaactgtca acaatttcca tctttcaaaa aaggtactcc tgattttatt
      301 cttttaaaat caatcaataa tttctctgct ttcaaaaaat attaaaagat gaaagatttt
      361 tcttgattga actgtcggtt tgcgttatcg tttccactct ttttcacaaa ctctgtgttc
      421 ctttccaatt gattggataa tccgtctgtt gccgtgttcc cccaatgcgc gtaccctaaa
      481 tcgctgcttg gtggaattgc attacaggtg ctgtggcaaa gcggtttgtc cctattggtt
      541 tgaaaccgta taaaagaggt cgttatgcag ttatcaggcg cgcaaatcat agtgcagagt
      601 ctcaaagccg aaggtgtcga gtacgttttc ggttatcccg gcggtgcggt tatcgaaatc
      661 tacgatgccc ttttccaact caataaattc aagcacattc tgacccgtca cgagcaggcg
      721 gcagtacacg cggcagatgc gtatgcgcgc gtcagcggta aggtgggcgt ggcattggtt
      781 acatccggcc cgggcgttac caatgcactg accggtattg ctactgccta tacggattcg
      841 attccgatgg tggtcatcag cgggcaggta ggcaattccc tgattggtac ggatgcgttc
      901 caagaagttg atacggtggg tattacccgt ccgtgcgtca aacacaattt cctggttacg
      961 gatatcaatg agttggcgga aaccattaaa aaggcgttcc aaattgccgc aagcggccga
     1021 ccggggcctg tggtggttga tgtcccgaaa gatgttacgc aggcgatggc gaaattcagc
     1081 tatcctcagg aagacatttt tatccgttcg tatcaaccgg ttgttcaagg gcatatcggt
     1141 cagattaaaa aggccgtgca gatgttggca tctgccaaac gtccagtcgt ctattttggc
     1201 ggcggcgtgg tgttgggtaa tgcttctgaa gagctgaccc gatttgtccg aatgacgggt
     1261 gctccgtgca cgggtacgct gatgggcttg ggcgcttatc cttccagcga ccgccaattc
     1321 ctcggtatgc tcggtatgca cggtacttac gaggcaaacc ttgccatgca gaatgcggat
     1381 gtcgttcttg ccgtaggtgc gcgttttgac gaccgtgtgg tttccgtacc gtccaaattt
     1441 ttcgagaagg ctaagaaggt tatccatatc gatgtcgatc cttccagcat cgccaaacgc
     1501 gtgaaggtgg acattccgat tgtcggcgac gtgaaaaacg ttttgtccga gatggttgcg
     1561 ctgtggcaaa aacaagagtc cgtgccgtct gaagatgctt tgggcaaatg gtggaaaacc
     1621 atagaggaat ggcgttccca agattgcttg tggtttgaca acggcagcga aattatcaag
     1681 ccacaatatg tgattcagaa gcttgccgag attaccggca attcggcaat catcacatcg
     1741 gatgtagggc agcatcaaat gtttgcggct caatattatc ccttcgaacg tccgcgccaa
     1801 tggctcaatt ccggcggttt gggtacgatg ggcgtgggtc tgccttatgc gattggtgca
     1861 aaacttgccg ccccggatca agacgtattc tgtattaccg gcgacggctc gatccagatg
     1921 aacatccaag agctgtccac ctgtttccaa tatcggattc cggttaacgt cattacgctg
     1981 aacaacggtt atctcggtat ggtacgccag tggcaggaaa tatattacgg cggacgagag
     2041 tcggaaacct atttcgattc tttgcccgat ttcgtcaaac ttgccgaggc atacggccat
     2101 atcggtatcc gcgtggacaa gaagtctgat gtggaaggtg cgttgttgga agcattgaac
     2161 caaaaagaca ggctggtgtt tatcgacttc ctgaccgacc agaaacagaa tgtgatgccc
     2221 atggtcggca acggcaaagg tttggacgaa atggtacttc cgccgcatat gcgtgcggac
     2281 ggaaaggcgt aaggagaggc aaatgcgaca tatcttatct gttctgatcg aaaacgaatc
     2341 aggtgcgatg agccgcgtgg tcggtttgtt ctctgcacgc gattacaata tcgattcttt
     2401 ggcggttgcg ccgaccgaag acaaaaccct gtcccgtatg accatcgtta cacacggcga
     2461 cgagcaggtc atcgaacaaa tcaccaagca actcaataaa ttgattgaag tgattaaagt
     2521 ggtcgatttg aacgaaagcc gttttgtcga acgcgaactg atgttggtaa aagtccgtgc
     2581 cgccggcaaa gaccgcgacg aatttttacg cttgaccgaa atctaccggg gcagcatcat
     2641 cgacgtaacc gaccgcagct atacgattga aattaccggc tcgaccgaca agctggattc
     2701 ctttttggaa acggtcggac gcgcccaaat tttggaaacc gtacgtacag gcgcggccgg
     2761 catcggtcgc ggtgagcgta ttttgaaaat ttaacgccgt aacctttcag acggcacggt
     2821 atttgaatgt cgtctgaaaa acgaacggca ggagagattt atgtcgaaca ttaaaattgt
     2881 cgcactggtt accgtcaaac cagaatacac agaaacactg gcagcacagt ttaaagaact
     2941 ggtcaaagcc agccgtgcag aagagggcaa catcagctac gatctccatc aggaaatcgg
     3001 caaaccgaac cgttttgttt tcgtggaaaa ttggaaatcc caagcagcta ttgacgaaca
     3061 taacgccagc gcgcatttcc aagccttcgt ccagtccgtc gacggcaaaa ccgaagcgtt
     3121 ggaaatcgta ttgatgaatg aagttgccga ttaagcggca cactctgttt aacccgtccg
     3181 aagccgctca acattttaag gcttcgacaa ccatttacct taaaggaaat caaatgcaag
     3241 tctattacga taaagatgcc gatctgtccc tgatcaaagg caaaaccgtt gccatcatcg
     3301 gttacggttc gcaaggtcat gcccatgccg ccaacctgaa agattcgggt gtaaacgtgg
     3361 tgatcggtct gcgccacggc tcttcttgga aaaaagccga agcagccggc catgtcgtca
     3421 aaaccgttgc tgaagcgacc aaagaagccg atgtcgttat gctgctgctg cctgacgaaa
     3481 ccatgcctgc cgtctatcac gccgaagtta cagccaattt gaaagaaggc gcaacgctgg
     3541 catttgcaca cggcttcaac gtgcactaca accaaatcgt tccgcgtgcc gacttggacg
     3601 tgattatggt tgctcccaaa ggtccgggtc ataccgtacg cagtgaatac aaacgcggcg
     3661 gcggcgtgcc ttctctgatt gccgtttacc aagacaattc cggcaaagcc aaagacatcg
     3721 ccctgtctta tgcggctgcc aacggcggca ccaaaggcgg tgtgattgaa accactttcc
     3781 gcgaagaaac cgaaaccgat ctgtttggcg aacaagccgt attgtgcggc ggcgtggtcg
     3841 agttgatcaa ggcgggtttt gaaaccctga ccgaagccgg ttacgcgcct gaaatggctt
     3901 acttcgaatg tctgcacgaa atgaaactga ttgttgacct gattttcgaa ggcggtattg
     3961 ccaatatgaa ctactccatt tccaacaatg cggagtacgg cgaatacgtt accggccctg
     4021 aagtggtcaa tgcttccagc aaagaagcca tgcgcaatgc cctgaaacgc attcaaaccg
     4081 gcgaatacgc aaaaatgttt atccaagagg gtaatgtcaa ctacgcgtct atgactgccc
     4141 gccgccgtct gaatgccgac caccaagttg aaaaagtcgg cgcacaactg cgtgccatga
     4201 tgccttggat tactgccaac aaattggttg accaagacaa aaactgattg ttttcaaacg
     4261 ggactgccta cacatcgtgt aggcagt
//
LOCUS       DAWGNT010000153         4233 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.153, whole genome shotgun sequence.
ACCESSION   DAWGNT010000153 DAWGNT010000000
VERSION     DAWGNT010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4233
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.153"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            266..1186
                     /gene="ribF"
                     /locus_tag="WHR98_001694"
     CDS             266..1186
                     /gene="ribF"
                     /locus_tag="WHR98_001694"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEZ2308348.1"
                     /translation="MRIRLGRHNAPDFPHGAAVTIGNFDGVHLGHKHILQKLRLEADT
                     RGLPVVTVVFEPQPKEFFALRTGRMPPCRISPLRTKLELLEGTGCVDAVWVLRFDQNF
                     SEISAQGFIDRLLRQTLNTRYLLVGDDFRFGAGREGCFELLAQQPDMQTERTPSVIVE
                     DIRTSSTAVRQALSDGNLAYAKKLLGHDYVLSGRVVHGRKLGRTLNAPTANIRLPRHR
                     YALGGVFVVEADGAFGTRRGVASFGFNPTVDSGCSQKLEVHLFDFQGDLYGQRLNVRF
                     LHKLRDEEKFDGMEELKRQIEADMEAAKCW"
     gene            1327..4116
                     /gene="ileS"
                     /locus_tag="WHR98_001695"
     CDS             1327..4116
                     /gene="ileS"
                     /locus_tag="WHR98_001695"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEZ2308349.1"
                     /translation="MTDYSKTVNLLESPFPMRGNLAKREPAWLKSWYEQKRYQKLREI
                     VKGRPKFILHDGPPYANGDIHIGHAVNKILKDIIIRSKTQAGFDAPYVPGWDCHGLPI
                     EVMVEKLHGKDMPKARFRELCREYAAEQVARQKKDFIRLGVLGDWDKPYLTMDFKTEA
                     DTVRMLGEIYKSGYLYRGAKPVQFCLDCGSSLAEAEVEYKDKISPAIDVAYLFKDTAA
                     LAAAFGLAGFEGKAFAVIWTTTPWTLPASQAVSAGADVVYQLIDTPKGKLVLAKDLAE
                     DALKRYGFSDGIAILAETTGDKLENLHMNHPFLERDILILNGEHVTTDAGTGLVHTAP
                     AHGLEDYAVCNKYGIELYNPVNAEGKYISETPRVAGMRVWEANSVILQWLEETGNLLA
                     SSKIEHSYAHCWRHKTPLIYRATGQWFVGMDKAGADGKTLRDKAIKAVDDTEFFPSWG
                     RARLEAMIEGRPDWVVSRQRYWGTPMTFFVHKETGELHPNSAELLEKVAQRIEEKGIE
                     AWFSLDKSELLSAEDCEHYDKLPDTMDVWFDSGSTHYSVVKQREELEWPADLYLEGSD
                     QHRGWFQSSMLTGCASSMGRAPYKQLLTHGFVVDGEGKKMSKSIGNVVAPQEVYNEFG
                     ADILRLWAASTDYSGELAISKEILKRVTESYRRIRNTLSFLFANLSDFNPIEDAVQQA
                     DMVEIDRYALVLARRLQERLAGDYYPRYAFHFAVKDIVSFCSEDLGAFYLDILKDRLY
                     TTKADSRARRSAQTALYHITRSLVLLIAPILCFTGEEAWDIIGGGEEDSVLFHTWHEF
                     PTINEKTEAELVKKWTAIREAREAVTAAIEPLRADKTVGSSLQAEAEITAPEEMAGYL
                     NALGEELRFALLVSKAEVKVGSELAVAAKASDGEKCERCWHYTRDVGAVAGYETVCKR
                     CAENVGGEGETRHYA"
BASE COUNT         1034 a         1173 c         1122 g          904 t
ORIGIN      
        1 tgcgcgggaa tgacggcgga gggttgcttg tctcggttta cctggttaaa aaagaacgat
       61 tttcactgat gttgcatcag gtttggggcg atgtttcaac acatagcacc gcgcctgctg
      121 cgcgctttat gcgtttggcg cgttcggctg cgggaaattt gcctactttt cccgcgtcgg
      181 gcgggcgtaa cgggcggcac actgtctata aaccgcaata ccgtttacaa tgaccgcctg
      241 tttcaccaca tacccgaaca taacaatgag aatcaggctg gggcggcaca acgcgcccga
      301 ctttccgcac ggggccgccg taaccatagg caattttgac ggcgtacacc tcggacacaa
      361 acacatcctc caaaaactcc gcctcgaagc cgatacgcgc ggattacccg tcgtgaccgt
      421 cgttttcgaa ccccaaccca aagaattttt cgcactccgc accggcagga tgccaccgtg
      481 tcggatcagc cccctgcgca ccaagctcga attattggaa ggcacaggct gtgtcgatgc
      541 cgtctgggtt ttgcgtttcg atcaaaattt ttccgaaata tccgcgcaag ggtttatcga
      601 ccgcctgctg cgtcaaacct tgaatacgcg ttatttgctc gtcggcgacg atttccgttt
      661 cggtgcgggg cgggaaggct gttttgaact tttggcacaa cagcccgata tgcagaccga
      721 gcgtacgcct tccgtcatcg tcgaagacat ccgcaccagc agcaccgccg tccgccaagc
      781 cctttcagac ggcaaccttg cctatgcgaa aaaacttttg ggacacgact acgtcttgag
      841 cggcagggtg gtgcacggca gaaaactcgg acgcacctta aacgccccga ccgccaatat
      901 ccgcctgccc cgccaccgtt atgccctcgg cggcgtgttt gtcgtcgaag cggacggcgc
      961 attcggcacg cggcgcggcg tggcgagctt cggtttcaat cccaccgttg atagcggctg
     1021 ttctcaaaag cttgaagtcc acttgttcga ctttcaaggc gacttgtacg gacaacggct
     1081 gaacgtccgc ttcctgcaca aactgcgcga tgaggaaaag tttgacggta tggaagaact
     1141 gaaaaggcag attgaagccg atatggaagc cgcaaagtgt tggtagaaaa accttataca
     1201 aaccatccga ttgggctaca atcaatcttt taacttttca gacggcatag gggtttcccg
     1261 ttgtgaaata ctgtttgagg cgcaatgccg tctgaaccga aatattgtaa caatagagat
     1321 taaaaaatga ccgattacag caaaaccgtc aacctgctcg aaagcccgtt cccgatgcgc
     1381 ggcaatcttg ccaagcgcga gcctgcatgg ctgaaaagct ggtacgagca aaaacgctac
     1441 caaaaactgc gcgaaatcgt caaaggccgt ccgaaattca tcctgcacga cggcccgccg
     1501 tatgccaacg gcgacatcca catcggtcat gccgtcaata aaattctcaa agacatcatt
     1561 atccgcagca aaacccaagc cggttttgac gcgccttatg tgccgggttg ggactgccac
     1621 ggcctgccca tcgaagtgat ggtagaaaaa ctgcacggca aagatatgcc caaagcacgt
     1681 ttccgcgaat tgtgccgcga atatgccgcc gaacaagttg cccgccagaa aaaagacttt
     1741 atccgtctgg gcgtgttggg cgactgggac aagccctacc tgaccatgga ttttaaaacc
     1801 gaagccgata ccgtgcgtat gctcggcgaa atctacaaat ccggctatct ctaccgcggt
     1861 gcgaaaccgg ttcagttctg cttggactgc ggctcttcct tggctgaagc cgaagtggaa
     1921 tataaagaca aaatctcgcc cgcgattgac gttgcctatc tgtttaaaga cactgccgcg
     1981 cttgccgccg cattcggttt ggctggtttc gaaggcaaag cgtttgccgt catttggacg
     2041 actacgcctt ggacgctacc ggcgagccaa gccgtgtctg cgggtgcaga cgtggtgtat
     2101 caactgattg atacgccgaa aggcaaattg gtattggcga aagatttggc agaagacgcg
     2161 ctcaaacgtt acggtttttc agacggcatt gctattctcg ccgaaaccac cggcgacaag
     2221 ctggaaaacc tgcacatgaa ccatccgttc ctcgaacgcg atatcctcat actcaacggc
     2281 gaacacgtta ccaccgatgc cggtaccggc ttggtacaca ccgcccccgc gcacggtttg
     2341 gaagactacg ccgtctgcaa taaatacggc atcgagcttt acaaccccgt caacgccgaa
     2401 ggcaaataca tcagcgaaac gccgcgtgtc gccggtatgc gcgtttggga agccaattcc
     2461 gttatcctgc aatggctgga agaaaccggc aaccttttgg caagcagcaa aatcgaacac
     2521 agctacgccc actgctggcg ccacaaaacg ccgctgattt accgcgcgac aggtcaatgg
     2581 tttgtcggta tggacaaagc cggtgccgac ggcaaaaccc tgcgcgacaa agccatcaag
     2641 gccgtggacg ataccgaatt cttcccgtct tggggtcgcg cgcgtttgga agccatgatt
     2701 gaaggtcgtc ctgactgggt ggtttcacgc caacgctatt ggggcacgcc gatgactttc
     2761 tttgttcaca aagaaacggg cgagctgcat ccgaactctg ccgaactttt ggaaaaagtc
     2821 gcgcaacgca ttgaagaaaa aggcatcgag gcttggttct ccctcgataa aagcgaatta
     2881 ttaagcgcgg aagattgcga acattacgac aaactccccg atacgatgga cgtatggttc
     2941 gattccggtt cgacccatta ttccgttgtg aaacaacgcg aagaattgga atggccggcg
     3001 gatttgtatc tcgaaggcag cgaccagcac cggggctggt ttcaatcgtc catgctgacc
     3061 ggctgcgcct catcaatggg acgcgcaccg tataaacagc tgctgaccca cggttttgtt
     3121 gtagacggcg aaggcaaaaa aatgtcgaaa tccatcggca acgtcgtcgc gccgcaagaa
     3181 gtctataacg aattcggcgc ggacatcctg cgtctgtggg cggcatctac cgattacagc
     3241 ggcgaattgg cgatttctaa agaaatcctt aagcgcgtaa ccgaaagcta ccgccgtatc
     3301 cgcaatacct tgagcttttt gtttgccaac ttgagcgact ttaatccgat tgaagatgcc
     3361 gtgcaacagg cggatatggt ggaaatcgac cgctatgccc tggtgttggc gcgtcggctg
     3421 caagagcgtc tggcaggcga ttactatccg cgttatgcct tccattttgc cgtgaaagac
     3481 attgtttctt tctgctcgga agacttgggc gcgttctacc tcgatatcct gaaagaccgc
     3541 ctctacacca ccaaagccga cagccgcgcc cgccgcagcg cgcaaaccgc cctgtaccac
     3601 atcacgcgca gcctggttct cttgattgca ccgattttgt gctttaccgg cgaagaagcg
     3661 tgggacatca tcggcggcgg cgaagaagac agcgtcctct tccatacttg gcacgagttc
     3721 ccgaccatca acgaaaaaac cgaagccgaa ctggtgaaaa aatggacggc aatccgcgaa
     3781 gcccgcgaag cggtaaccgc cgccatcgag cctttgcgcg ccgacaaaac cgtcggttcg
     3841 tccttgcaag ccgaagccga aattaccgcg ccggaagaaa tggccggcta tctgaatgct
     3901 ttgggcgaag aattgcgctt tgctttgctg gtgtctaaag cagaagtgaa agtaggcagc
     3961 gaacttgccg ttgccgctaa agccagtgat ggtgaaaaat gcgaacgctg ctggcactac
     4021 acccgcgatg tgggcgcggt tgcaggctat gaaaccgtct gcaaacgctg tgcagagaat
     4081 gtcggcggag aaggcgaaac gcgccattac gcctgataaa gtttgagcaa atgccgtctg
     4141 aaaccgccga acagcatttc agacggcatt ttttgtaccg cgatttgtct ttataacggc
     4201 ggaggggttt caagattacg gtgttgtcgg aac
//
LOCUS       DAWGNT010000154         4211 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.154, whole genome shotgun sequence.
ACCESSION   DAWGNT010000154 DAWGNT010000000
VERSION     DAWGNT010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4211)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4211)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4211
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.154"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(82..1128)
                     /gene="recA"
                     /locus_tag="WHR98_001696"
     CDS             complement(82..1128)
                     /gene="recA"
                     /locus_tag="WHR98_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEZ2308350.1"
                     /translation="MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGS
                     LGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAVAQCQKNGGVCAFVDAEHAFDPV
                     YARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
                     DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFY
                     SSVRLDIRRTGSIKKGEEVLGNETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELID
                     IGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEVANEIDAKIRALNGVEMHIT
                     EGTQDETDGERPEE"
     gene            1382..2146
                     /locus_tag="WHR98_001697"
     CDS             1382..2146
                     /locus_tag="WHR98_001697"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEZ2308351.1"
                     /translation="MCSCLVVKNTVIGSGRTKIAVPLVARDAAELSAVLDQIKNLPFD
                     IVEFRADFLECAGSIGEVLRHTQTVRDALPDKPLLFTFRRHGEGGAFPCSDDYYFKLL
                     DALIESRLPDIIDIELFAGETAVRRAVANAQKNGIAALLCNHEFHRTPPQEEIVCRLK
                     QMEDCGADICKIAVMPQSAEDVLTLLSATLEAKRLAAKPVVTMSMGQTGAVSRLAGQV
                     FGSSITFGSGTQNSAPGQIGVSALRAALDCLESGAD"
     gene            2166..4181
                     /gene="rep"
                     /locus_tag="WHR98_001698"
     CDS             2166..4181
                     /gene="rep"
                     /locus_tag="WHR98_001698"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HEZ2308352.1"
                     /translation="MMKLNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNV
                     GYLPHTVAAITFTNKAAAEMQERVAKMLPKSQTRGLTICTFHSLGMKILREEANHIGY
                     KKNFSILDSTDSAKIIGELLGGTGKEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQ
                     QTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRHKWQRRLRYLLVDECQDTN
                     TCQFTLMKLLTGAEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQMKVIKLEQNYR
                     STARILKIANKVIENNPKLFTKKLWSQLGEGEPVKVVACQNEQHEADWVVSQIVKQKL
                     IGGDKTQYADFAVLYRGKHQARIFEEALRGARIPYRLSGGQSFFDKAEIKDVLSYVRL
                     LANPNDDPAFLRAVTTPKRGIGDVTLGKLNTYAHEHECSLYEAAQNEEALATLNNTNR
                     QHLQAFMDMFGSYRAKAETGEAGEFINSLLEEIDYENHLLASEEGKAGEIKWRNVGDL
                     VSWFARKGGEDGKNIIELAQTVALMTLLEGKDEEETDAVSLSTLHAAKGLEYPYVFLV
                     GCEEGVLPHNDSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEPSRF
                     IDEMPQEDLKILGRKGGEPIVSKEEGRRNLADIIGRLDSMKKGGPED"
BASE COUNT          992 a         1155 c         1161 g          903 t
ORIGIN      
        1 aaactcaaat caagccgttc ggaggcggct caaaaaaacg gtacttcgca gcagaagtac
       61 cgtttatcgg gatttcaggt tttattcttc ggggcgttcg ccgtcggttt cgtcctgcgt
      121 cccttcggtg atgtgcattt ctacgccgtt gagggcgcgg atttttgcgt cgatttcatt
      181 ggcgacttcg ggattttcct tcagccagac gcggacgttg tctttgccct gaccgatttt
      241 cgcgccgttg tagctgtacc acgcgccgga tttgttgatg atgtcgtttt tcacgccgat
      301 gtcgatcaat tcgccttccc aactgatgcc ttctccgtag aggatgtcaa actctgcctg
      361 acggaacggg ggggcgactt tgtttttgat gactttgacg cgggtttcgt tgcccaatac
      421 ttcttcgcct tttttgatag atccggtgcg gcggatgtcg aggcggacgg aagaatagaa
      481 tttcagcgcg ttgccgccgg tggtggtctc ggggctgccg aacattacgc cgatcttcat
      541 ccggatttgg ttgatgaaca caaccagcgt gttggttttt ttgatgtgtc cggtcagttt
      601 gcgcaaagcc tgactcatca ggcgcgcctg cagtccgaca tggctgtccc ccatatcgcc
      661 ttcgatttcg gctttgggga cgagtgcggc tacggaatcg acgactacca tatctatgcc
      721 gcccgaacgg acgagtgtgt cgcagatttc caaagcctgt tcgccggtat cgggctggga
      781 caggtaaagc tcttcgactt ttacgccgag tttgcgggcg taaacgggat caaaggcgtg
      841 ttcggcatcg acaaaggcgc acacgccgcc gtttttctgg cattgggcga cggcttcgag
      901 gcagagggtg gttttgccgg aggattcggg gccgaagatt tcgacgatgc gcccgcgcgg
      961 cagaccgccg actccgaggg cgaggtctaa tccgagcgat ccggtggaaa tgacttcgag
     1021 gttttcttcc tgctggctgc cgtccatttt catgatggcg cctttgccga aacttttttc
     1081 gatttgcgcc agtgcggcgg caagggcttt gcttttgtcg tctgacattg gggttactcc
     1141 ggaacaaatg cggtatgtag gatgcggcgc aacacgggct gcggcgcggg atgtgtatcg
     1201 ttttcccgat gtgcgggcta tcggtaatgc tgcttcacga ggttgccatt atcgcatatt
     1261 tccttgcttg ccgatatgcg gcaggacgcg gcggcttgtg ccggaatgga atctggatgc
     1321 cgtctaaaag gcggccggct ttgttataat ggcggctgtt ttttctgtgt gtgcctgttt
     1381 tatgtgttcc tgccttgttg tcaaaaatac cgttatcgga agcggacgca ccaaaatcgc
     1441 cgtgccgctt gtcgcccgcg atgccgccga actttccgcc gtacttgacc aaatcaaaaa
     1501 cctgcccttc gacatcgtcg agttccgcgc cgattttttg gaatgcgcgg gcagcatcgg
     1561 cgaagtattg cgccacacgc agaccgtccg cgacgcgctg cccgacaagc cgctgctgtt
     1621 tacgttcaga cggcatggcg aaggcggcgc gttcccgtgt tcggacgatt attatttcaa
     1681 actgctcgac gcgctgatcg aaagccgcct gcccgacatc atcgacatcg agctgtttgc
     1741 cggcgaaacc gccgtccggc gcgccgtggc aaatgctcaa aaaaacggca tcgccgccct
     1801 gctctgcaat catgagtttc accgcacgcc gccgcaagaa gaaatcgtat gccgtctgaa
     1861 acagatggag gactgcggcg cggacatctg caaaattgcg gtgatgccgc aaagcgcgga
     1921 agatgtgctg actttgcttt ccgccacgct cgaagcgaaa cggcttgccg ccaaaccggt
     1981 tgttacgatg tcgatggggc agacgggtgc ggtcagccgc cttgccggac aggtgttcgg
     2041 ctcaagcatc acgttcggtt cgggaacgca aaactccgcg ccggggcaaa tcggcgtatc
     2101 cgccctccgt gcggcactcg actgtctcga aagcggcgca gactgatttc agacggcatc
     2161 aaaacatgat gaaactcaat ccccaacagc tcgaagccgt ccgttacctc ggcggtcccc
     2221 tgctcgtcct cgccggcgct ggcagcggca aaaccggcgt gattacgcaa aaaatcaagt
     2281 atttgattgt caatgtcggc tatctgccgc ataccgttgc cgcgattacc tttaccaata
     2341 aagccgccgc ggaaatgcag gagcgcgtcg ccaaaatgct gcccaagtcg caaacgcgcg
     2401 ggctgacgat ttgcacgttc cattctttgg gcatgaagat tttgcgcgaa gaggcgaacc
     2461 atatcggtta caaaaaaaac ttctccattc tcgattctac cgacagcgcg aaaatcatcg
     2521 gcgaactctt aggcggtacg ggcaaagaag ccgtattcaa ggcgcagcac cagatttcct
     2581 tgtggaaaaa cgatttaaaa acgcctgaag atgtcgttca gacggcatcg aacatttggg
     2641 aacaacaaac cgcacgcgtg tatgcgagct atcaggaaac cttacaaagc tatcaggcag
     2701 tggactttga cgacttaatc cgcctgcctg ccgtgctgtt gcagcaaaac agcgaagtgc
     2761 gccacaaatg gcagcggcgg ctgcgttatc tgctggttga cgaatgccaa gatacgaata
     2821 cctgccaatt tacgttgatg aaacttctga ccggcgcgga aggtatgttt accgccgtcg
     2881 gcgacgacga ccagtccatc tacgcatggc gcggtgcgaa catggaaaac ctgcgtaaaa
     2941 tgcaggaaaa ctatccgcag atgaaggtca tcaaactgga gcaaaactac cgctccaccg
     3001 cgcggattct caaaatcgcc aacaaagtca tcgaaaacaa ccccaagctg tttaccaaaa
     3061 aactttggtc gcaattgggc gaaggcgagc cggtcaaagt cgttgcctgc caaaacgagc
     3121 aacacgaagc cgactgggtc gtcagccaaa tcgtcaaaca aaaactcatc ggcggcgaca
     3181 aaacccaata tgccgatttc gccgtgttgt accggggaaa gcatcaggcg aggattttcg
     3241 aggaagcatt gcgcggcgcg cgcatcccct accgtctctc cggcggacaa agctttttcg
     3301 acaaagccga aatcaaagac gtgttgtctt atgtgcggct gcttgccaac cccaacgacg
     3361 atcccgcctt tctgcgtgcc gttaccacgc ccaaacgcgg catcggcgat gtaacgctgg
     3421 gcaagctcaa cacttacgcg cacgaacacg aatgcagcct gtatgaagcc gcgcaaaacg
     3481 aagaagccct cgccacgctg aacaatacca accgccaaca cctgcaagcc tttatggata
     3541 tgttcggcag ttaccgtgcc aaagccgaaa ccggcgaagc gggcgagttc atcaacagcc
     3601 tgctcgaaga aatcgactat gaaaaccacc tgcttgccag tgaagaaggc aaagctggcg
     3661 aaatcaaatg gcgcaacgtc ggcgatttgg tatcatggtt tgcgcgaaaa ggcggggaag
     3721 acggcaaaaa catcatcgaa ctcgcccaaa ccgtcgcctt gatgacgctt ttggaaggaa
     3781 aagacgaaga agaaaccgat gccgtctcgc tatccacgct acacgccgcc aaaggtttgg
     3841 agtatccgta tgttttcctt gtcggttgcg aagaaggcgt tttgccgcac aacgacagca
     3901 tcgaagaagg caacgtcgaa gaagaacgcc gcctgatgta cgtcggcatc acccgcgcca
     3961 aacgccaact cacactgacc cactgcgtca aacgcaaaaa acaaggcaca tggcagttcc
     4021 ccgaacccag ccgattcata gacgaaatgc cgcaggaaga tttgaaaatc ctgggtcgca
     4081 aaggcggcga accgattgtc agcaaagaag aaggcagacg caaccttgcc gatataatcg
     4141 gaaggctcga cagcatgaaa aaaggcggtc cggaggatta aaccaagata gggaaacgaa
     4201 gccggagaca a
//
LOCUS       DAWGNT010000155         4205 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.155, whole genome shotgun sequence.
ACCESSION   DAWGNT010000155 DAWGNT010000000
VERSION     DAWGNT010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4205
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.155"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(235..675)
                     /locus_tag="WHR98_001699"
     CDS             complement(235..675)
                     /locus_tag="WHR98_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEZ2308353.1"
                     /translation="MQAIREYTQNRLPESYYLFLQQCGTGDFFYSWYTSVIDQTVSQM
                     PKIEIYNLTQLKEENIYYQQLLREELDDIPPDEHPDIGKILIIGAHHSMGDWFGFDLS
                     RAEPNFDIFIHDAANHATYAEEAEWRRFEDWIIRCVESEGEDTL"
     gene            complement(1044..2021)
                     /locus_tag="WHR98_001700"
     CDS             complement(1044..2021)
                     /locus_tag="WHR98_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308354.1"
                     /translation="MEKIYLDYQFIIDEVDDRKNWKLSNIDDNKYQIVYSPAHIEEIV
                     RGKKCNKLKGNIFLYTNYVSNLTKDRQLIRTDASTAKILEKPFGENGIFLVEENPRYC
                     CQRVLKYLDKNEIAEEGQKQILEDGNRKFEQFNQKNRQKKVVGIQKLSILDIFNRDDD
                     VFNEFLTKIVYSYILKNIVSENLNKFNLDNNLYMELLCKSFFSNININNRIEKERNRF
                     EKIFRDKDNIFKEISSEHHLVENIIDNLMKTLMSCGFYLEAERKATSNLHDTTHCIYA
                     AYSDFFITRDKKLKYRVEAIYKYLGVKTQVIFVDSSDNEDILVDRFGKP"
     gene            complement(2056..4083)
                     /gene="uvrB"
                     /locus_tag="WHR98_001701"
     CDS             complement(2056..4083)
                     /gene="uvrB"
                     /locus_tag="WHR98_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HEZ2308355.1"
                     /translation="MEVIRYPDSPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLL
                     GVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYY
                     QPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
                     QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENAL
                     RISLFDDEIDRLDMFDPLSGSLHQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRER
                     IDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDY
                     LPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVM
                     PQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQK
                     GERVLVTTLTKRMAEQLTDYYSELGIKGRYLHSDIDTVERVEIIRDLRLGLFDVLVGI
                     NLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYADKITDSM
                     KAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEDDGGKGRRQGKNKVKV
                     GEIHNEEDAIKEIAKLEKAMQQAAKDLQFEEAAVLRDRIRGIKENLLFGAE"
BASE COUNT         1011 a          862 c         1016 g         1316 t
ORIGIN      
        1 atgggtttct catcgaaaat actattttca tctcacaata aaataaaaga attcaattca
       61 aataaatatg attaaataca acaagcaagc cgtaacacgc ataaaatctt tagttttccg
      121 taggtcggat tctcgaatcc gacattttgg ttatttctgc aatgaattgc aacgacagga
      181 atattaaaga ttttgtcgga tacaagtatc cgacctactc ttgctacggc ttgtttaaag
      241 cgtatcttct ccctcgcttt ccacgcaacg aataatccag tcttcaaaac gccgccattc
      301 ggcttcctcg gcataggtgg cgtgattggc ggcatcgtgg ataaaaatat cgaagttggg
      361 ttcggcacgg gataggtcaa agccgaacca atctcccatg ctgtgatgtg cgccgatgat
      421 aaggatttta cctatgtcgg ggtgttcgtc aggcggtatg tcatcaagtt cttcgcgtaa
      481 tagttgttgg taatagatat tttcttcttt cagttgggtg aggttgtaga tttctatttt
      541 gggcatttga gatacggttt gatctatcac gctggtgtac catgaataga agaaatcccc
      601 cgtgccgcat tgttgtaaaa ataaataata gctttcaggc agtctgtttt gcgtatattc
      661 gcgtatcgcc tgcaattcat cggttaaaag gggatgtgca ttaaaattta gatggtttgt
      721 gtgagagaat tggctgtttg tgagccaata ttgaagttat tgcagggctt gcggataggt
      781 catgatggtc agattcttct ttttaatgga ttatcgttgg actttgaatc aactggtagg
      841 aatcagccta tgcgttatta tattcgttgc ctgaaatgaa acaaaggtcg tctgaaagtt
      901 tgaaacaatg gtgtaaacgg cacaaaacgc gcacgtgcgt accgcacaca ccctacacct
      961 cggttttaaa gtttgtgccg cccgcaggta gagtgtgtgg tgcagtcatg cacgcggttg
     1021 gtggggaagc gggctacggc ttgctacggc ttaccgaatc tatctactaa aatatcttca
     1081 ttatctgagc tatctacaaa aattacttgt gttttcacgc ctaaatattt atagatagcc
     1141 tcgactctat atttgagctt tttgtctcta gtaataaaaa aatcactata cgcagcgtat
     1201 atacaatgtg ttgtgtcatg taaattagaa gtggcttttc tttctgcttc taaataaaat
     1261 ccacaactca ttaatgtttt cataagatta tcaataatat tttcaactaa atgatgttca
     1321 gaggaaattt ctttaaaaat attatcttta tcgcgaaata ttttttcaaa cctatttctt
     1381 tctttttcta tcctattatt aatgttgata ttagagaaga aacttttaca taacaactcc
     1441 atatacaaat tattatctaa attaaattta tttaaatttt ctgatacaat attttttaaa
     1501 atatatgaat aaactatttt agttagaaat tcattaaaaa catcatcatc cctattaaaa
     1561 atatctaaaa tacttaattt ctgtattcct actacctttt tttgcctatt tttctgatta
     1621 aattgttcga atttcctatt tccatcttcc aaaatttgtt tttgaccttc ttctgctatt
     1681 tcatttttat ctaaatattt taagaccctt tgacagcagt atctggggtt ttcttcaact
     1741 agaaatatcc cattttctcc aaaaggtttc tccaaaattt ttgcagtaga cgcatctgtt
     1801 cttattagtt gcctatcttt agtaagatta cttacataat tagtatataa aaaaatattt
     1861 ccttttaatt tattacactt tttcccacgc actatttctt ctatatgcgc aggagaataa
     1921 acaatttggt atttgttatc atcaatattt gatagtttcc agtttttcct gtcatcaacc
     1981 tcatcaataa taaattgata atcaagatat atcttttcca taaattaccc taataattaa
     2041 atcaatatga atactttact cagccccaaa caacaaattc tctttaatac cccgtatcct
     2101 atccctcaac acagcagctt cttcaaactg taaatcctta gctgcctgct gcatggcttt
     2161 ttccagtttg gcgatttctt taatcgcgtc ttcttcgttg tggatttcgc cgactttaac
     2221 cttgtttttg ccttgtctac ggcctttgcc gccgtcgtct tcgtggtaca cgccgtcgat
     2281 gatgtctttg acctgttttt taatctgctg cggaacaata ccgtgttctt cgttgaattt
     2341 aatctgtttt tcgcggcggc gttcggtttc gtcgatggcg gctttcatgg agtcggtgat
     2401 tttgtcggcg tacaggatgg cgacgccgtt cacgttgcgc gcggcgcggc ctatggtttg
     2461 aatcaggctg cggtgggagc gcaggaagcc ttctttgtcg gcgtcgagga tggcaacaag
     2521 ggagacttcg gggatgtcga ggccttcgcg caagaggttg atgccgacga gtacgtcaaa
     2581 cagtccgagc cgcaaatctc taataatttc aacgcgctct acggtgtcga tgtcgctgtg
     2641 caggtagcgc cctttgatgc cgagttcgct gtaatagtcg gtgagttgct ccgccatgcg
     2701 tttggtaagg gtggtaacga gtacgcgttc gcctttttgg atgcggtcgt tgatttcgct
     2761 cattaagtca tcaacttggg tggcgacggg gcggatgatg atttgagggt cgaccagccc
     2821 tgtggggcgg acgacttgtt cgaccacttg tccggcgtgt tcttcttcgt atttggcggg
     2881 ggtggcggaa acgaagacgg tttgcggcat gactttttca aattcgtgga atttgagcgg
     2941 gcggttgtcg cgggcggaag gtaggcggaa gccgtaatcg acgaggtttt gcttgcgcga
     3001 tgcgtcgcct ttgtacatgc cgccgatttg tgtgacggta acgtggcttt cgtcgatgaa
     3061 catgatggcg ttgtcgggca ggtagtccat cagcgtgggc ggcggttcgc cttctttttt
     3121 gccggagaag tgacgggagt agttttcgat acctttgcag aagcccattt cgtagagcat
     3181 ttcgaggtcg aaacgggtgc gctgttcgat gcgttgttgc tcgacgggac ggttttcttt
     3241 ggtaaagaaa tcaatgcgtt cgcgcaattc ttctttgatg gactcgcagg cgcgcaatac
     3301 ggtgtcgcgc ggggtaacgt agtggctgga cgggaagacg gtgtagcggc cgacgcgttg
     3361 gtgcaggctg cctgaaagcg ggtcaaacat atcgaggcgg tcgatttcgt cgtcaaacag
     3421 gctgatacgc aaggcgtttt cggagctttc ggcggggtac acgtcaatca cgtcgccgcg
     3481 cacgcggaag ctgccgcgtt tgaaatccaa atcgccgcgt tcgtactgca tggaaacgag
     3541 cgtggcgatg atgtcgcgct gctcgatggt gtcgccttct ttgacggaca acaccatttg
     3601 ttgatactca gtcgggtcgc cgataccgta aatggcggac acagtggcaa cgataatcac
     3661 gtcatcgcgc gtcatcaggt ttttggtggc ggaaaggcgc atctgctcga tgtgttcgtt
     3721 gatcgcactg tctttttcga tgaacaaatc gcggcttggc acataggctt cgggttggta
     3781 atagtcgtag taggagacga aatattccac cgcgttttca gggaaaaact cgcgcatttc
     3841 ggcataaagc tgggcggcaa gggttttgtt gtgcgccatg atgatggcgg gtcggccgct
     3901 ttgggcgatg acgttcgcca tggtgtaggt tttgcccgaa ccggttacgc cgagcagggt
     3961 ttggtaggca aggccgtctg aaagcccttc gagcaagtcg gcaatagcgg taggctggtc
     4021 gcctgcgggc gggaagggtt ggtggagttt gaagggggaa tcggggtatc gaatgacttc
     4081 cataatcttg cctgtgatgc gtttgcggac aaagcgtgta gtagggatgg gtcggaaacg
     4141 tctttcagac ggcataaggc ggtgaaatcc tgaatgtatg ccgtctgaaa cccaatcgct
     4201 accca
//
LOCUS       DAWGNT010000156         4197 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.156, whole genome shotgun sequence.
ACCESSION   DAWGNT010000156 DAWGNT010000000
VERSION     DAWGNT010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4197
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.156"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(157..672)
                     /locus_tag="WHR98_001702"
     CDS             complement(157..672)
                     /locus_tag="WHR98_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308356.1"
                     /translation="MSAFRKILLIISCLLIASCSFVETIFYMAISPEPVVVDFPLGKK
                     TKRSIELKQKIGKPYAISLGTNFIHYDPKQGERWIDDKLNYPYNISVKIFKVEEDGKK
                     LIIDKLLTERSRKLGGGVFGAGGKYSMYIYDFYLPEGEYLFEISDNSEYIPLYDEINN
                     SIRIVVNARIQ"
     gene            complement(932..1489)
                     /locus_tag="WHR98_001703"
     CDS             complement(932..1489)
                     /locus_tag="WHR98_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FrpA"
                     /protein_id="HEZ2308357.1"
                     /translation="MENNKAKSDDNSVSIEFIQDFITASTDVINLSYENFRKNFYTQM
                     STDSTNYAAKHESLGKSVQRELQKTQSQLRQVVRKMQSKYNINNKARAAEISLLRQMQ
                     SQFSRKDVNKNLGNGNTLAQQGSYTKKDGTTAQAGDLLLAADNLHSRLTDKMLSISHV
                     RENTISPFVLGCLKQITINVSHYLK"
     gene            complement(2027..2311)
                     /locus_tag="WHR98_001704"
     CDS             complement(2027..2311)
                     /locus_tag="WHR98_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308358.1"
                     /translation="MKLALKRSGKYNVYDPLALDLDGDGIETVATKGFSGSLFDHTNN
                     GIRTATGWIAAYDGFSVRKLNSNGGIISTTDTIFQSLHTWLDHQPNDTCH"
     gene            complement(2308..2601)
                     /locus_tag="WHR98_001705"
     CDS             complement(2308..2601)
                     /locus_tag="WHR98_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated frpA domain protein"
                     /protein_id="HEZ2308359.1"
                     /translation="MNIDDFTPSKIANFFADPDTYSNVLEEVSRFIYSLVPDDANPWK
                     GGEDYIGRGISEWGELLEKWYKQDFLPYLEKNGTNFRNLKIGCLNSLNGQESG"
     gene            complement(2777..2998)
                     /locus_tag="WHR98_001706"
     CDS             complement(2777..2998)
                     /locus_tag="WHR98_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated frpA domain protein"
                     /protein_id="HEZ2308360.1"
                     /translation="MTYANFNINGFGDVKLTPYSPLLGYKAWDSFIGSIQSLSDLIYN
                     VDNNRNKMEITVNNAIQAADSFLSSNWKR"
     gene            4021..>4197
                     /locus_tag="WHR98_001707"
     CDS             4021..>4197
                     /locus_tag="WHR98_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin B"
                     /protein_id="HEZ2308361.1"
                     /translation="MAIVSTPHPALSALIILAHYHGIAAKSLGLKAKVVRQPVKRLAM
                     VTLPALVWCDDGNHF"
BASE COUNT         1400 a          765 c          580 g         1452 t
ORIGIN      
        1 agccccgatt tttttatctc tagccgaata cagttcaacc caaacgtacc cgtcttggat
       61 acaccccctc ttgtttcagt ggcgtaccct gcttcgcaaa ttttacagtt atcgcataat
      121 aatcagccat aagtaacccc acatttctag aaaaatttac tgaattcgtg cattaactac
      181 tattcttata gaattattta tttcatcgta aagtggaata tattcactat tatcagaaat
      241 ctcaaataaa tattcccctt ccggcaaata aaaatcataa atatacatac tgtattttcc
      301 cccagctcca aatactccgc ctcctaattt tctacttctc tctgtaagca acttatctat
      361 aataagtttt ttaccatctt cttccacttt aaatatttta accgatatat tatatggata
      421 gtttaactta tcatcaatcc acctctcccc ctgttttgga tcataatgta taaaattagt
      481 tcctaacgat attgcataag gtttaccaat tttctgtttg agttcaatag atctttttgt
      541 ttttttacca agaggaaagt ctaccacaac aggttctggg ctaatagcca tataaaaaat
      601 agtttcaaca aaactgcagc tagcaatcaa taggcaagat attattaata atatttttct
      661 aaatgcagac ataataaaaa tttccaaaaa atccatatca gaatatacta attatttgta
      721 taattaataa ggaagagaaa aattcaaaac ggctatgaga tttccgcctg aaaataatga
      781 aataaaagtc catagtaatg aataatagct ttatcagccc ccctttaatg caaacataga
      841 gaatacttcc cttgaagcac tatcaatttc tacttaacta aaactctagc tctattttaa
      901 aattttgtca aaaatagtta aatactttta tttattttaa ataatgagat acatttatgg
      961 ttatttgttt tagacagcct aaaacaaacg gggaaatcgt gttttcccga acatggctaa
     1021 tggatagcat tttgtccgtg aggcggctgt gcaggttgtc agcagccaac agcaaatcgc
     1081 ctgcttgcgc ggttgtgccg tcttttttgg tgtagctgcc ttgttgagcc aaagtgttgc
     1141 cgttaccaag atttttgttt acatcttttc gagaaaattg gctttgcatt tgccttaaca
     1201 aagatatttc tgctgctcgt gctttattat ttatattata tttactctgc atttttctta
     1261 caacttgtct caactgactt tgtgtttttt gtaattcacg ttgtaccgat tttcctaaac
     1321 tttcatgttt ggctgcataa ttggtagaat cagttgacat ttgtgtataa aaatttttac
     1381 gaaaattttc gtaactcaga ttaattacat ccgtacttgc agttataaaa tcttgtataa
     1441 attcaataga aactgaatta tcatcagatt tggctttgtt attttccata ttgagcctct
     1501 cttaatttga aaaaattaac ataaacattt aaaaataaaa caaaattata taataaaaaa
     1561 aataatgaga atataaagga taaaaagaga gttaagttat ttaatcggac ttgttctcta
     1621 taaatcataa ggcaccaaat aagccataat aaatttagta aataaaaact gcttataccc
     1681 aactttcttt tcttggaacc tattattatt tcaactctgg atgaaaaaat agaatttaaa
     1741 aatttttttc tttgatatat cgttaatatc tccctagttt ttcttaaaaa aaatataatc
     1801 atatatatat tacacaacat tggtaataaa taaattaaaa gcgaaaggta attaaattga
     1861 taattgtaaa ttatataata aacaacatac gaagaaaaaa ttattataga tgatttacta
     1921 tacgaataaa aaaatatcct acctagcccg aaccttctta taatttgtac tatgtgatca
     1981 ttcatttcaa tatccattta agctttcaat taattttcta tatttttcaa tggcatgtat
     2041 catttggttg atgatcaagc catgtatgca aagattggaa tatggtatct gtcgtgctaa
     2101 taatgccccc gttactgttt aatttgcgca cagaaaaacc gtcatatgca gcaatccagc
     2161 ccgtggcggt gcggatgccg ttgttggtgt gatcaaataa gctgcctgaa aagcctttgg
     2221 tggcaacggt ttctataccg tcgccgtcca aatctagggc gaggggatcg taaacgttat
     2281 atttgcctga acgtttgaga gctaatttca accactctct tgcccattca gggaattcag
     2341 gcagccaatc ttcaaatttc ggaaattggt cccattcttt tcaagataag ggagaaaatc
     2401 ttgtttatac catttttcca gtaactctcc ccattcactt atccctcgtc caatataatc
     2461 ttcgccccct ttccaagggt ttgcatcatc aggaactaag gaatatataa acctagatac
     2521 ttcttctaat acattgctgt atgtatcagg atccgcaaaa aagtttgcta tcttacttgg
     2581 tgtaaaatca tctatattca ttatagattc gccaagcctc tcgtttccat aatccttatt
     2641 taattcaatt catgctgtaa aacagtagag gattttagca tttttctcgt atatctcgag
     2701 atacatttct taaatttaaa aaaatgttat cgagggatgc aagtaaagaa gcagtatttg
     2761 ttattttgtt attttgttat ctcttccaat tactgcttaa aaagctatct gcagcttgaa
     2821 tagcattatt aacagtaatt tccattttat ttctattgtt atccacatta tagattaaat
     2881 cagataagga ttgaatagaa ccaataaatg aatcccaagc tttatatccc aagagtggtg
     2941 aatagggtgt taatttcaca tctccaaaac cgttaatatt aaaatttgca tatgtcatat
     3001 ctgctttcct ttcaagtaaa ttaaaaaaat aacgtgagga attaaaatta aaaataaatt
     3061 aattatcgac tcaatataat atgaatcaat tagctctctt atggtaaata taagaggtaa
     3121 aaatactaaa aataaactaa taaagttcag aaaaatagta aatggaatat tttcatatgg
     3181 aaaaattcta caaaatacaa gtaatattcc atgacatatt aacaaatgag taaaattcat
     3241 tataaaatat ataaatattt ccccatcgta agatatattc aaataaagac atataaacaa
     3301 tataaagtat ataaaatata ttttttggca tctaaaaaat aaacttttag caatcatata
     3361 tgaatagctt gtagaataga aaacgaaaat tattaattat cgtaggtgtg catttattcc
     3421 aacacggttt catgcagctt aaaaaccaga aattctttct ccctttatcc tttcttaaaa
     3481 atagcgtttc caaattctgc aacgacaggt ttcattcaag taggactgcc gtgattgcat
     3541 caattgcttc gcggcatggc atccatatca cacaacagga catttattct cgggtaagtc
     3601 caccttcatc ctcttcggcc agcaggaaca gtaaaatatg ctctgtactc ggatagtaaa
     3661 tatttccttt ctcactattg tttgtcattt aatcgacagt ctactctttc tctaaaattt
     3721 cgtcaataat agttaaatat atttaaatac atttaaaata ataatataca cctgtttcag
     3781 tctgtctaaa acacgggaaa atatgttatt tgatcacaac ggtgactttg ggcagcctgt
     3841 accttcaata acgcgtggaa aatagatata tacttatatc gtattcgagg ctgtcttgtt
     3901 tccctcaaac aaccattctt ccacactttt gctttacaat tttcgtgtgt atccttacaa
     3961 ttacccctat tgtttttgta tattcctttg ccaaccgtta ttgctatcca atctaatatt
     4021 atggctatcg tatctacacc acaccccgct ctttccgccc tcatcatcct cgcccattat
     4081 cacggcattg ccgccaaatc tttgggattg aaggcaaagg tagtacgcca gcctgtcaaa
     4141 cgtttggcta tggtgacctt acctgcattg gtatggtgtg atgacggcaa ccatttt
//
LOCUS       DAWGNT010000157         4185 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.157, whole genome shotgun sequence.
ACCESSION   DAWGNT010000157 DAWGNT010000000
VERSION     DAWGNT010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4185
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.157"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..394
                     /locus_tag="WHR98_001708"
     CDS             <1..394
                     /locus_tag="WHR98_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pretoxin"
                     /protein_id="HEZ2308362.1"
                     /translation="RLKKGDTLLSESGAKQTVQNITLKQQPLKAYNLTVADWHTYFVK
                     GSQAETEGVWVHNACPPKRTGSSKNEKHGDGGRSQISAESRIAELENKIIPGMPKNER
                     LKIKQKIRNITKNANRKAKGEEHGRRGR"
     gene            375..830
                     /locus_tag="WHR98_001709"
     CDS             375..830
                     /locus_tag="WHR98_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308363.1"
                     /translation="MVDAVVKTPEFVPFTSVGIFRFGADITEYKNILETFMYEPPDEF
                     GTEYYESPDSNLLISVEKNKIISIFCYQELYFMGVNIIGLNFEDFKQLFHHPKSYGVD
                     KYYLSNESYPTYVYEFDEIGVQAWEAKGKIVTIIAGGKDNYSTEPYYDE"
     gene            1421..1756
                     /locus_tag="WHR98_001710"
     CDS             1421..1756
                     /locus_tag="WHR98_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308364.1"
                     /translation="MMADKEQVEKMIYSENKQSVIDGMLGMTFSSEEDEIPWISEKLT
                     ELSKHKDLDIARLSLTCFGHLARMHENIGDCDKVIALLRSKQGNPDFQGFAEDALDDI
                     SFFIFKKRP"
     gene            1905..2399
                     /locus_tag="WHR98_001711"
                     /pseudo
     CDS             1905..2399
                     /locus_tag="WHR98_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233523.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2520..3653
                     /locus_tag="WHR98_001712"
     CDS             2520..3653
                     /locus_tag="WHR98_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308365.1"
                     /translation="MFKKFKPVLLSFFALVFAFWLGTGIAYEINPRWFLSDTATEVPE
                     NPNAFVAKLARLFRNADRAVVIVKESMRTEESLAGAVDDGPLQSEKDYLALAVRLSRL
                     KEKAKWFHVTEQEHGEEVWLDYYIGEGGLVAVSLSQRSPEAFVNAEYLYRNDRPFSVN
                     VYGGTAHGENYETTGEYRVVWQPDGSVFDAAGRGKIGEDVYEHCLGCYQMAQVYLAKY
                     RDVANDEQKVWDFREESNRIASDSRDYVFYQNMRELMPRGMKANSLVVGYDADGLPQK
                     VYWSFDNGKKRQSFEYYLKNGNLFIAQSSTVALKADGVTADIQTYHAQQTWYLDGGRI
                     IREEKQGDRLPDFPLNLENLEKEVRRYAEAAARRSGGRRDLSH"
     gene            complement(3740..4015)
                     /locus_tag="WHR98_001713"
     CDS             complement(3740..4015)
                     /locus_tag="WHR98_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308366.1"
                     /translation="MNEGEVVLTPEQIQTLRGYAFRGDTYGGWRYLANLGDRYADDAA
                     AIVGKDANLNGLNLWMKKGVENLWDDTVGKKIRLMCISVFWIVVFNL"
     gene            complement(4032..>4185)
                     /locus_tag="WHR98_001714"
     CDS             complement(4032..>4185)
                     /locus_tag="WHR98_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FrpC operon protein"
                     /protein_id="HEZ2308367.1"
                     /translation="TSVGSCINGFTVQYYPFIREKQQLTQQELVGYHQQVEQLVQSFV
                     NNSSKK"
BASE COUNT         1325 a          752 c          961 g         1147 t
ORIGIN      
        1 tcgtctgaaa aaaggcgaca ccctgctttc cgaaagcggt gcaaaacaga cggttcaaaa
       61 cattaccctc aaacagcagc cgctcaaagc ctacaatctg accgttgccg attggcatac
      121 ttacttcgtc aagggcagtc aggcggaaac ggaaggggtt tgggttcata atgcgtgtcc
      181 gcctaaaaga acaggaagct ccaagaatga aaaacatgga gatggcggtc gaagtcaaat
      241 atcagcagaa tcacgaattg ctgaattaga aaataaaatt attcccggaa tgcccaaaaa
      301 tgaacgctta aagattaagc aaaaaatcag aaatattaca aaaaatgcca atcgaaaagc
      361 aaaaggagaa gagcatggtc gacgcggtcg ttaaaactcc cgaatttgta ccttttactt
      421 ctgtaggaat attccgtttt ggtgcggata taacagagta caaaaacata ctggaaactt
      481 ttatgtatga acctcctgat gagtttggaa cagaatatta tgaatctccc gactcaaatt
      541 tactcatttc cgtcgaaaaa aacaaaatta tttcgatatt ttgttatcag gagctatatt
      601 ttatgggcgt taatataata ggtctgaatt ttgaagattt taaacagctt ttccatcacc
      661 ctaaatcata cggtgttgat aaatattatt tatcaaatga atcttatccg acatatgtct
      721 atgagtttga tgaaatagga gtacaagctt gggaagcaaa agggaaaatt gttactatca
      781 ttgccggggg caaagacaat tattcgacag aaccttacta cgatgaataa cattaatggc
      841 aggcataggt tgggttgaga actcaacaac aaaaggtcgt ctgaaaccgt aatcgatttt
      901 tcagacgacc tttctgtcaa tccaaacaga ttgtcgaatc ttaatccaac ctgtgcttgc
      961 tgtacggaac aggcacggtg ttcattcaca agttaagtca tatattgaat caaaaggcgg
     1021 cattgttaaa acaggtttag gagattaaac atggcatcat atgtttccat aaaaggatgg
     1081 attgaatgct ctgacgatga tataaaaatc atccaagaaa acattaataa tttttggaat
     1141 aattgtccct tcaatatcga agagaaagaa tctgcaaaaa tatataaaag tgggtgggtt
     1201 ttcccgacaa atagttttaa ttggagcagc tatatttttt tggtgcatgc gtaaaatctt
     1261 atttcattat ttattttgaa aaatgtatta aaacaataat ggaattggat attgaaatat
     1321 caggtttttt tgaattagat tattatgaag atagttataa agtaaattag aaaataaata
     1381 atggcaattt aatacaaacg actaattaaa tggacaaaaa atgatggctg ataaggaaca
     1441 agtagaaaag atgatttatt ctgaaaataa acagagtgtt attgacggta tgctcggtat
     1501 gaccttcagc tcggaggagg atgaaatccc ttggatttct gagaaattga cggagttgtc
     1561 gaagcataaa gacttggata ttgccagatt gtcattaacc tgtttcggac atcttgccag
     1621 gatgcatgaa aatatcggcg attgcgataa agtgattgct ttattgcgct caaaacaagg
     1681 taatccggat tttcaaggtt ttgccgaaga tgcgttagac gatatttcct tctttatatt
     1741 taaaaagcgt ccgtaagcac cggcaaggtc aaatctggca aatgccgtct gaagcggtat
     1801 tcggctttca gacggcattt tctccgattg gcacaggatg caggggcttg ccggcttgat
     1861 tttgccgaag ttgttggcaa acaatttgga gggggcggca atttatggaa aatagatttg
     1921 caaaaatcgt taaggatatt tttagtttta cccaatttgt ttccgaagcg gaaaataaaa
     1981 ttcctaacca atcctcccgt tattacgact gctggtagga attggaaatc ttgaatgctt
     2041 ccgcattgga agattgggaa atatcggaaa agcctgaaaa atgggagaaa tggacagaaa
     2101 aatatcagac cgaagcgtta cagttagtca agaatctatt tgccgaagaa gttcctgaaa
     2161 ataatatagt ttgcgatatt tctcattttt tgcattttgc caatcgggca gaagccgaca
     2221 ttcccaatca atcacgttta tatgccgaat attggtggga aatggaaacg ttcaaaatgt
     2281 cggttttaga agattgggaa cgctcgggaa agccgttaga ttgggaaaaa tggcaaaggc
     2341 aatatcaatt tgaagcattt gaattagtta aaaaattgaa tcaaagcaaa caagagtaac
     2401 aagccgcagc ctgcataggg ggtttttaaa gtacggcagc aaccgtagat taaattaaaa
     2461 atcaaacaat caaagctcgt ctgatataat cgatatattc tgttaaacga aaaataaata
     2521 tgtttaaaaa attcaaaccg gtactgttgt cattttttgc acttgtattt gccttttggc
     2581 tgggaacggg tattgcctat gagattaatc cgcgttggtt tttgagcgat acggcaactg
     2641 aagtacctga aaatccgaat gcttttgtgg cgaaacttgc ccgcctgttc cgaaatgccg
     2701 acagggcggt tgtcatcgtg aaggaatcga tgaggacgga ggaaagtctt gccggagctg
     2761 tggatgacgg tccgttgcag tcggagaagg attatcttgc actcgctgtc cggctcagtc
     2821 gtttgaaaga aaaggcgaaa tggtttcacg taacggagca ggaacatggg gaagaggttt
     2881 ggctggatta ctatatcggc gagggcggtt tggttgcggt ttcgctttcg caacgctcgc
     2941 cggaagcgtt tgttaatgcc gaatatctgt atcggaacga tcgtccgttt tctgtaaatg
     3001 tgtacggcgg aacggctcac ggggaaaatt atgaaacgac aggagaatat cgggttgttt
     3061 ggcaaccgga cggttcggta tttgatgcgg cagggcgcgg gaaaatcggg gaagatgttt
     3121 atgagcattg cctcgggtgt tatcagatgg cccaggtata tttggcgaaa taccgggatg
     3181 tcgcgaatga tgagcagaag gtttgggact tccgcgaaga gagcaaccgg attgcatcgg
     3241 actcgcgcga ttatgtgttt tatcagaata tgcgggaatt gatgccccga gggatgaagg
     3301 caaacagtct tgtggtcggc tatgatgcgg atggtctgcc gcagaaagtc tattggagtt
     3361 tcgacaatgg aaaaaaacgc cagagtttcg aatattattt gaaaaacgga aatcttttta
     3421 ttgcacaatc ttcgacggta gcattgaaag cggatggcgt aacggcggat atacagacct
     3481 atcatgcgca acagacgtgg tatttggatg gcgggcggat tatccgcgaa gagaaacagg
     3541 gagacagact gcctgatttt cctttgaact tggaaaattt ggaaaaagag gtgcgccgtt
     3601 atgcagaggc tgcggcgaga cgttcgggcg gcaggcgcga cctttctcac tgaacgcaaa
     3661 tgccgtctga aaccggtttt cagacggcat tggagagtca aacgcttttt gcaatgccgt
     3721 atatgccgaa tccaattcgc tacaaattga aaaccacaat ccaaaaaaca gaaatacaca
     3781 ttaaacggat ctttttaccg accgtatcat cccataggtt ttccacacct tttttcatcc
     3841 ataaattcaa accatttaag tttgcatcct taccgacaat tgcagcagca tcatccgcat
     3901 aacggtcacc caaattagcc aaataacgcc aaccgccata ggtatcgcca cggaaagcat
     3961 aaccacgcaa ggtttggatt tgttctggtg ttaaaacaac ttcaccctca ttcataataa
     4021 gatcctttaa attatttttt acttgaattg tttacaaaac tctgtaccaa ttgctctact
     4081 tgttggtgat aacctaccaa ctcctgctgt gtgagctgct gcttttcccg aataaacggg
     4141 taatactgta ccgtgaaacc gttaatacag gaacctacgc tagtg
//
LOCUS       DAWGNT010000158         4177 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.158, whole genome shotgun sequence.
ACCESSION   DAWGNT010000158 DAWGNT010000000
VERSION     DAWGNT010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4177
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.158"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..126)
                     /locus_tag="WHR98_001715"
     CDS             complement(<1..126)
                     /locus_tag="WHR98_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4177 domain-containing protein"
                     /protein_id="HEZ2308368.1"
                     /translation="MKEYKVVIYQESPLSSLFFGAAKVNPVNFSAFLNKQPPEGWR"
     gene            complement(201..1544)
                     /gene="argG"
                     /locus_tag="WHR98_001716"
     CDS             complement(201..1544)
                     /gene="argG"
                     /locus_tag="WHR98_001716"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEZ2308369.1"
                     /translation="MNQNHTILQNLPVGQKVGIAFSGGLDTSAALLWMKLKGALPYAY
                     TANLGQPDEDDYNAIPKKAMEYGAENARLIDCRAQLAHEGIAAIQCGAFHVSTGGIAY
                     FNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTYKGNDIERFYRYGLLTNPALKIYKPW
                     LDQQFIDELGGRHEMSEFLIANGFNYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIK
                     IVKPIMGVAFWDENVEIEPEEVSVRFEEGVPVALNGKEYADPVELFLEANRIGGRHGL
                     GMSDQIENRIIEAKSRGIYEAPGMALFHIAYERLVTGIHNEDTIEQYRINGLRLGRLL
                     YQGRWFDSQALMLRETAQRWVAKAVTGEVTLELRRGNDYSILNTESPNLTYQPERLSM
                     EKVEDAAFTPLDRIGQLTMRNLDITDTRAKLGIYSQSGLLSLGEGSVLPQLGNKQ"
     gene            1669..2469
                     /locus_tag="WHR98_001717"
     CDS             1669..2469
                     /locus_tag="WHR98_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003705157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEZ2308370.1"
                     /translation="MNAFNLIIIGDEILHGSRQDKHFVFFKSLLESKGLKLNQVQYLP
                     DEPDLLVKQLRRSFSDGIPTFVTGGIGATPDDHTRQAAAAALDLPVVRHPEAAKFIEG
                     VTLKRGEPLDSPEHAQRLKMADFPEGAELVPNPFNNIAGFSIHEHYFFPGFPVMAHPM
                     AEWVLETYYADRFNQTERGSRSVYVFEQPESRITPIMEHIEQTYLGVRSYSLPSVGWT
                     HSDGTQVKPHIEFGIKAEGEAVNLLDAAWAEVLHSLDGLGAELKNRVN"
     gene            2509..3495
                     /locus_tag="WHR98_001718"
     CDS             2509..3495
                     /locus_tag="WHR98_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HEZ2308371.1"
                     /translation="MQYRIRRENEAPEAKNTGETLWERDIMREVLLSAYQDRRRERMW
                     KNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKD
                     GMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASG
                     CYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFS
                     PETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLV
                     DGLGNIYSVARDVVKAPDVVDYTPKDDFGRILGRRFGAELKASVREALQAVR"
BASE COUNT          992 a         1062 c         1159 g          964 t
ORIGIN      
        1 ccgccagcct tcggggggtt gtttgttgag gaacgcgctg aaattgacgg ggttgacctt
       61 tgccgcgccg aaaaacaggc tggacaacgg gctttcctga taaatgacta ctttgtattc
      121 tttcatagga ttccttttaa cataagggat catcttttca gacgacccct taagttgcta
      181 atgatgcaaa acagcaaacc ttattgctta ttgcccaact gcggcaatac cgaaccttcg
      241 cccagcgaga gcaaaccgct ttgcgaataa atacccagtt tggcgcgggt gtcggtgatg
      301 tcgaggttgc gcatcgtgag ctgtccgatg cggtcgagcg gagtgaacgc agcgtcttcg
      361 actttttcca tactcaggcg ttcaggttgg taggtcagat tgggcgattc ggtgttcaga
      421 atcgagtagt cgttgccgcg ccgcagttcg agggtaactt cgccggtaac ggctttggcg
      481 acccagcgtt gggcggtttc gcgcaacatc agggcttggc tgtcgaacca gcggccttgg
      541 tagagcaaac gtccgaggcg caggccgttg atgcggtatt gttcgatggt gtcctcgttg
      601 tggatgccgg ttaccaagcg ttcgtaggcg atgtggaaca acgccattcc cggggcttcg
      661 tagatgccgc gcgatttggc ttcgatgatg cggttttcga tttggtcgct catgcctaag
      721 ccgtggcggc cgccgatgcg gttggcttcg aggaagagtt cgacgggatc agcgtattct
      781 ttgccgttca gtgcaaccgg cacgccttct tcaaagcgta cgctgacttc ttcgggttcg
      841 atttcgacgt tttcgtccca aaaggcaacg cccataatgg gtttgacgat tttgatgccc
      901 gagttcaaaa attccaagtc tttggcttcg tgggtggcac ccaacatatt ggaatcggtg
      961 gagtaggctt tttccaccga cattttgtag ttgaagccgt tggcaatcag aaattcgctc
     1021 atttcgtgac ggccgccgag ttcgtcgata aattgctgat cgagccaggg tttgtagatt
     1081 ttcagcgcgg gattggtgag caaaccgtag cggtagaaac gctcgatgtc gttgcctttg
     1141 taggtgctgc cgtcgcccca aatattcaca tcgtcttctt tcattgcgga aacgagcatg
     1201 gtgccggtca cggcgcggcc cagaggcgtg gtgttgaaat aggcgatgcc gccggtggaa
     1261 acgtggaacg cgccgcattg gatggcggcg atgccttcat gtgccaactg cgcgcggcag
     1321 tcgattaagc gggcgttttc cgcgccgtat tccatcgctt ttttaggaat ggcgttgtaa
     1381 tcgtcttcgt cgggctggcc gaggttggca gtgtaggcat aaggcagtgc gcctttgagt
     1441 ttcatccaca acagcgcggc ggaggtatca agtccgccgg agaaggcgat gccgactttc
     1501 tgaccgacgg ggaggttttg taaaatagta tggttttggt tcatgaaaaa atcctcggta
     1561 gcttgaaaaa tcaaagccat tatcttataa ataggaaata ttgtcagcca tcatgccgtc
     1621 tgaacgggta ttccgccgtt tcaggcggta tttaaaaccg aaaacattat gaacgcgttc
     1681 aaccttatca tcatcggcga cgaaatctta cacggcagcc gccaagacaa gcatttcgtc
     1741 tttttcaaat ccctgctcga atccaaaggg ctgaagctca atcaggtgca atacctgccc
     1801 gacgaacctg atttgttggt caaacaactg cgccgcagct tttcagacgg cataccgact
     1861 ttcgttaccg gcggcatcgg cgccacgccc gacgaccaca cgcgccaagc cgcagcggct
     1921 gctttggatt tgcccgtcgt ccgccatcct gaagccgcca agtttatcga aggcgtaacc
     1981 ctgaaacgcg gcgagccgct cgattcgccc gaacacgccc aacgcctgaa aatggcagat
     2041 ttccccgaag gcgcggaatt ggtgcccaat ccgtttaaca acatcgccgg attttccatc
     2101 cacgagcatt attttttccc cggctttcct gtgatggcgc acccgatggc ggaatgggta
     2161 ttggaaactt attatgccga ccgcttcaac caaaccgaac gcggcagccg cagcgtgtat
     2221 gtgtttgagc agcccgaatc gcgcattacg ccgattatgg agcatatcga gcaaacttat
     2281 ctcggggtgc gttcgtacag cctgcccagc gtcggttgga cgcattcaga cggcacgcag
     2341 gtcaaaccgc acattgagtt cggcatcaaa gccgaaggag aagccgtcaa ccttttggac
     2401 gcggcgtggg cggaagtgtt gcacagcttg gacggattgg gagcagagct gaaaaatcgg
     2461 gtaaactgaa aaccgtttgc ccaaatcgga caatatttaa ggaaaaccat gcaataccga
     2521 atcagaagag aaaacgaagc acccgaagca aaaaatacgg gggaaacctt atgggagcgc
     2581 gacatcatgc gcgaagtgct gctgtccgcc tatcaggaca ggcgcaggga gcggatgtgg
     2641 aaaaacatct ggcgcgccgt cagcaccctg attctggttg ccctgattgc aggcattttc
     2701 cgaaaagacg aagccgcatt gcagttggcg ggcaacacgc cgcataccgc agtcgtcaac
     2761 ctgtacggcg aaatcggcaa cggtgtagaa gaccaggtca aaaaactcaa agacggtatg
     2821 gaggccgcct acaaaaaccc gcaggcaaaa gccatcgtca tccgcgccaa cagccccggc
     2881 ggttcgcccg tcgtctccaa caccgctttt gaagaaatac gccgtctgaa ggcgcagcac
     2941 cctggcattc ccgtttatct cgtggcggaa gatatgtgcg cgtccggctg ctactacatc
     3001 gcggcggcgg cggacaaaat ctatgccgac ccgtccagca tcgtcggcag catcggcgtt
     3061 atcggcagca gtttcgacgc gaccggcctg atggaaaaaa tcggcgtgaa acgcagggtt
     3121 aaaattgcag gcagcaacaa aggcatgggc gatccgtttt cgcccgaaac gcccgaacag
     3181 tcaaaaatct gggaagaaat gctgaccggc atacacggtg agttcatcaa agccgtcaaa
     3241 accggacgcg gcggccgcct caaattccga caatatcccg acgtgttcag cggtcgcgtg
     3301 tacacaggcg cggatgcgct gaaagtcggg ctggtggacg gactcggcaa tatttacagc
     3361 gtggcgcgag acgtggtcaa agcccccgat gtggtggatt acactccgaa ggacgatttc
     3421 ggcagaatct tgggcagacg cttcggcgca gaactcaaag caagcgtgcg cgaagccctg
     3481 caggccgtcc ggtagcgttg tttacagtat ttctaaggga ataccaaaat aaaaatatac
     3541 acaaaaacac tcacctcccc agtatgctgc cactaagtca gccgcgtcac tatttaccgt
     3601 gcacttaaag ccgtaaaagg caggttgtcc cgggaggttt tgttcatcct gataccgatt
     3661 ggttgttgtt gctcaaagga cagaaggccg ccgataaacg agattacctg tttgtcgcta
     3721 ttgacgattt ttatactctg ccattttgcc ggacaaaacc gcagacagtg ctgccaagtt
     3781 tctgaccgaa catctggctg acccctgctt gtacctgatt gagtacgttt actctgacaa
     3841 tgataggtaa tataaagagc cgtccaacat gctttcggtg cagcttgtta taataatggg
     3901 attggttgga ggcttgcccg atttgcttgt ccgcagacca acggtaaggc ggagcgggtt
     3961 atccgtacct tgatggagat gtggcatgag gaacagtcgt ttgacagtcc ggaacatcgg
     4021 caaaaggagt tgtgctgctt tattaattta ggggctgccc tagatcacta gggaaattca
     4081 aattaagtta gaattatccc tatgagagaa agtcgtctaa gccggtataa acaaaataaa
     4141 ctcattttgt tatcgtggct atgatgtatt ggatgcg
//
LOCUS       DAWGNT010000159         4176 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.159, whole genome shotgun sequence.
ACCESSION   DAWGNT010000159 DAWGNT010000000
VERSION     DAWGNT010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4176
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.159"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            39..462
                     /locus_tag="WHR98_001719"
                     /pseudo
     CDS             39..462
                     /locus_tag="WHR98_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221878.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            568..1131
                     /gene="pgsA"
                     /locus_tag="WHR98_001720"
     CDS             568..1131
                     /gene="pgsA"
                     /locus_tag="WHR98_001720"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEZ2308372.1"
                     /translation="MPWNLPIFLTWLRVLLIPVMTALFYLPFPWFAEETINLTAAVIF
                     AVAALTDWFDGFLARLWKQTSDFGAFLDPVADKLMVAVSLLLLVKLDRTYVLFAMIII
                     GREITISALREWMAQMGKRNSVAVATVGKFKTAAQMLAIFLLLLNIPDFYGFNLVVIG
                     NVLMFIASLLTVWSMLYYLKMAWKEIA"
     gene            1211..1286
                     /locus_tag="WHR98_001721"
     tRNA            1211..1286
                     /locus_tag="WHR98_001721"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1244..1246,aa:Gly,seq:gcc)
     gene            1312..1387
                     /locus_tag="WHR98_001722"
     tRNA            1312..1387
                     /locus_tag="WHR98_001722"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1345..1347,aa:Gly,seq:gcc)
     gene            1411..1486
                     /locus_tag="WHR98_001723"
     tRNA            1411..1486
                     /locus_tag="WHR98_001723"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1444..1446,aa:Gly,seq:gcc)
     gene            1508..1583
                     /locus_tag="WHR98_001724"
     tRNA            1508..1583
                     /locus_tag="WHR98_001724"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1541..1543,aa:Gly,seq:gcc)
     gene            1609..1682
                     /locus_tag="WHR98_001725"
     tRNA            1609..1682
                     /locus_tag="WHR98_001725"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1641..1643,aa:Cys,seq:gca)
     gene            1785..1874
                     /locus_tag="WHR98_001726"
     tRNA            1785..1874
                     /locus_tag="WHR98_001726"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1819..1821,aa:Leu,seq:taa)
     gene            1978..3030
                     /gene="sohB"
                     /locus_tag="WHR98_001727"
     CDS             1978..3030
                     /gene="sohB"
                     /locus_tag="WHR98_001727"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003709418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HEZ2308373.1"
                     /translation="MWKEILLNYGIFLLELLTVFGAIALIVLAIVQSKKQSESGSVVL
                     TDFSENYKKQRQSFEAFFLSGEEAKHQEKEEKKKEKAEAKAEKKRLKEGGEKSSETQK
                     SRLFVLDFDGDLYAHAVESLRHEITAVLLIAKPEDEVLLRLESPGGVVHGYGLAASQL
                     RRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFAIVGSVGVVAEVPNIHRLLKK
                     HDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENRPQLDIEEV
                     ATGEHWFGRQALALNLIDEISTSDDLLLKAFENKQVIEVKYQEKQSLIQRIGLQAEAS
                     VEKLFAKLVNRRADVM"
     gene            complement(3081..3897)
                     /locus_tag="WHR98_001728"
                     /pseudo
     CDS             complement(3081..3897)
                     /locus_tag="WHR98_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201178.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter six-transmembrane
                     domain-containing protein"
     gene            complement(3952..4071)
                     /locus_tag="WHR98_001729"
     CDS             complement(3952..4071)
                     /locus_tag="WHR98_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEZ2308374.1"
                     /translation="MQRSHKVFATFGDKRTTRLFADLDALAEVMEKTISENKK"
BASE COUNT         1053 a         1004 c         1071 g         1048 t
ORIGIN      
        1 atcgctgggt atggtttgcc gccataagct gtctgctgtt gtccgccgtt tttattgcac
       61 cttacctgac ggcatttcac gaacaagaaa aaacattcga atatgcggaa ttgaccgtta
      121 ccgcccccaa ccgcagcgga cgggcaatca aactggatgc agacgggcag cattaccggc
      181 tttcctgcta tgggttcgac agtttgtgca caggcggcaa tatcggcaga accatcaggg
      241 cggagcaggt tagagccgtt ttaagcgaaa ccgtcggcaa aggtttttta aacggcgttc
      301 tgttggaata ccgcaacagt ggcagtgtct ataagcaata aagattttgc ccgcacggaa
      361 gaccgccttg tcgaagtgtt ggcacaacct gccgttttct gcctgaaact gggtattttg
      421 cttttattgc ccgccatttt cctgcgtttg aaaagaatgt gaaaacagat tggcggggcg
      481 ggggaatgcc catgcagcaa ttttacgttt tgggttatga ggataaccgt tataatcaca
      541 actttacagt ctgcacagag aaaaccgatg ccttggaatc tccctatctt cctcacatgg
      601 ttgagggtct tgctcattcc tgtcatgaca gccctttttt acctgccttt tccgtggttc
      661 gcggaggaaa cgattaatct caccgccgcc gtcatttttg ccgttgccgc cttaaccgac
      721 tggtttgacg gatttttggc aagactgtgg aaacagactt ccgatttcgg cgccttcctc
      781 gatcccgtcg ccgacaagct gatggttgcc gtatcgctac ttttactggt caaactcgac
      841 cggacctatg ttttgtttgc catgatcatt atcggcaggg aaattaccat ttccgcattg
      901 cgcgaatgga tggcgcaaat gggcaaaagg aacagcgttg ccgtcgccac cgtcggtaag
      961 ttcaaaaccg ccgcgcaaat gctggcaatt ttcctgctgc tgctgaatat tcccgatttt
     1021 tacggattta atcttgttgt tatcggcaat gtattgatgt ttatcgcatc tttgctgaca
     1081 gtctggtcga tgctgtatta tctgaaaatg gcgtggaaag aaatcgcctg aaaaaaacat
     1141 aaaaatagct tgacggcaaa aacagaatcc ataataattg cgtctcttcg atgttggaga
     1201 atgaaatcgg gcgggaatag ctcagttggt agagcgcaac cttgccaagg ttgaggtcgc
     1261 gagttcgaga ctcgtttccc gctccaaaaa tttcattttc ccacaatcat tgcgggaata
     1321 gctcagttgg tagagcgcaa ccttgccaag gttgaggtcg cgagttcgag actcgtttcc
     1381 cgctccaagt tttatttcaa acatatcaac gcgggaatag ctcagttggt agagcgcaac
     1441 cttgccaagg ttgaggtcgc gagttcgaga ctcgttttcc gctccaaaaa ccgatatgtt
     1501 tgaacgcgcg ggaatagctc agttggtaga gcgcaacctt gccaaggttg aggtcgcgag
     1561 ttcgagactc gtttcccgct ccaagttttt tagataagcc agttttaggg cgagatagca
     1621 aagtggttat gcagcggatt gcaaatccgt ctacgccggt tcgattccga ctctcgcctc
     1681 cattatcgta ctacggcggg gtggcagagt gtttatgcta tgaggagtgc aatcttcata
     1741 taggccggtt aaaatccgcg cccccgcctc cacctttcac aaatgcccgg gtggtgaaat
     1801 aggtagacac aacggactta aaatccgtcg ggactaaaca tcccgtgccg gttcgattcc
     1861 ggctccgggc accaagctga aaatgacaat gccgctccaa gcggttattt ttttatctgt
     1921 cggacggtga tggacaatat tgacatgttc atgcctgaac aagaggaaat ccaatcaatg
     1981 tggaaagaaa ttttactgaa ttacggtatt ttcctgctcg aactgcttac cgtgttcggc
     2041 gcaattgcgc tgattgtgtt ggctatcgta cagagtaaga aacagtcgga aagcggcagt
     2101 gtcgtactga cggatttttc ggaaaattat aaaaaacagc ggcaatcgtt tgaagcattc
     2161 tttttaagcg gggaagaggc aaaacatcag gaaaaagagg aaaagaaaaa ggaaaaggcg
     2221 gaagccaaag cagagaaaaa gcgtttgaag gagggtgggg agaaatcttc cgaaacgcaa
     2281 aaatcccgcc tttttgtgtt ggattttgac ggcgatttgt atgcacacgc cgtagaatcc
     2341 ttgcgtcatg agattacggc ggtgcttttg attgccaagc ctgaagatga ggttctgctt
     2401 agattggaaa gtccgggcgg cgtggttcac ggttacggtt tggcggcttc gcagcttagg
     2461 cgtttgcgcg aacgcaatat tccgctgacc gtcgccgtcg ataaggtggc ggcgagcggt
     2521 ggttatatga tggcgtgtgt ggcggataaa attgtttccg ctccgtttgc gattgtcggt
     2581 tcggtgggtg ttgtagcgga agtaccgaat atccaccgcc tgttgaaaaa acatgatatt
     2641 gatgtggatg tgatgacggc gggcgaattt aagcgcacgg ttacttttat gggtgaaaat
     2701 acggaaaagg gcaaacagaa attccgacag gaactggagg aaacgcatca gttgttcaag
     2761 cagtttgtca gcgagaaccg ccctcaattg gatattgagg aagtggcaac gggcgagcat
     2821 tggttcggtc ggcaggcgtt ggcgttgaac ttgattgacg agatttcgac cagtgatgat
     2881 ttgttgttga aagcgtttga aaacaaacag gttatcgaag tgaaatatca ggagaagcaa
     2941 agcctgatcc agcgcattgg tttgcaggcg gaagcttctg ttgaaaagtt gtttgccaaa
     3001 cttgtcaacc ggcgggcgga tgtgatgtag tttgccgaac ggatggaaat gccgtctgaa
     3061 gcgtgttcag acggcatttt tcaagttccg gctttgatgt tccgtttcga ccactctatc
     3121 cgttgtccga tgtctttcaa attggaatat tgttcgacca atcgcggcac gtcgtccaaa
     3181 ctcatggcaa acatccacag ataagtgccg accgaataga catgccccgc gctgctgtag
     3241 cctttgagcg tcatcatcac aaaagcaaag ccgaacaaaa tacccatcgc cgtgccgacg
     3301 cagagatagc cgaaggcttc gcggttggaa atcagcacac gcaggcgcgc aagcagtccg
     3361 taatggcggt ccagctgccg ctcgtcgcct tttcggataa agtggttgtc gcgttccaag
     3421 ctgttcttca ggcggaaata caggttttcg ctgatggcgg caaaacgtgg caaaagccat
     3481 aaaaacaacg caagtatgcc caccgccgac acgccgaccc aaaattccag caccagcagc
     3541 atgatgcacg cgccgaatat ggatacgacg gatgtcgcgg caatcggcag gtgttcttca
     3601 aaaaagctga caaactcacg cgacagggca acccgcgcag ttaccgccga atgcgggact
     3661 tgccgctgcc gctgttccaa cacaaccggc acggcgattt cggtataaat ccgcgtaaac
     3721 gtgcgcgtat cggcaatccg ccgcaccgac cagccacatc aaaagcacaa ccaaagcgta
     3781 cagcaacgcc tgccacgcct gccccgcaat cacggcatta atcgcccagc cgccaaacac
     3841 cggatacacc agcatcaaaa ggttttccag tccgaccaga aaaaatgtgc caatcaatcg
     3901 cttgcggtgg ttttggctat gtgtttcaac attttccaca tatttgcccc cctatttttt
     3961 attttccgag attgtttttt ccatcacttc agccagtgca tccaaatcgg caaacagccg
     4021 ggttgtgcgc ttgtcgccga atgtggcaaa tactttgtga gacctttgca aaattccttt
     4081 ccctcccgac agctgacacc caaacacagg ttttcggctg ttttcgtttc aaatatccac
     4141 taattttacc ccaatacccc cctaatcctc ctcgga
//
LOCUS       DAWGNT010000160         4154 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.160, whole genome shotgun sequence.
ACCESSION   DAWGNT010000160 DAWGNT010000000
VERSION     DAWGNT010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4154
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.160"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(164..1567)
                     /locus_tag="WHR98_001730"
     CDS             complement(164..1567)
                     /locus_tag="WHR98_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEZ2308375.1"
                     /translation="MTLLNLMIMQDYGISVCLTLTPYLQHELFSAMKSYFSKYILPVS
                     LFTLPLSLSPSVSAFTLPEAWRAAQQHSADFQASHYQRDAVRARQQQAKAAFLPHVSA
                     NASYQRQPPSISSTRETQGWSVQVGQTLFDAAKFAQYRQSRFDTQAAEQRFDAAREEL
                     LLKVAESYFNVLLSRDTVAAHAAEKEAYAQQVRQAQALFNKGAATALDIHEAKAGYDN
                     ALAQEIAVLAEKQTYENQLNDYTDLDSKQIEAIDTANLLARYLPKLERYSLDEWQRIA
                     LSNNHEYRMQQLALQSSGQALRAAQNSRYPTVSAHVGYQNNLYTSSAQNNDYHYRGKG
                     MSVGVQLNLPLYTGGELSGKIHEAEAQYGAAEAQLTATERHIKLAVRQAYTESGAARY
                     QIMAQERVLESSRLKLKSTETGQQYGIRNRLEVIRARQEVAQAEQKLAQARYKFMLAY
                     LRLVKESGLGLETVFAE"
     gene            complement(1636..3063)
                     /locus_tag="WHR98_001731"
     CDS             complement(1636..3063)
                     /locus_tag="WHR98_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HEZ2308376.1"
                     /translation="MFFSALKSFLSRYITVWRNVWAVRDQLKPPKRTAEEQAFLPAHL
                     ELTDTPVSAAPKWAARFIMAFALLALLWSWFGKIDIVAAASGKTVSGGRSKTIQPLET
                     AVVKAVHVRDGQHVKQGETLAELEAVGTDSDVVQSEQALQAAQLSKLRYEAVLAALES
                     RTVPHIDMAQARSLGLSDADVQSAQVLAQHQYQAWAAQDAQLQSALRGHQAELQSAKA
                     QEQKLVSVGAIEQQKTADYRRLRADNFISEHAFLEQQSKSVSNWNDLESTRGQMRQIQ
                     AAIAQAEQNRVLNTQNLKRDTLDALRQANEQIDQYRGQTDKAKQRQQLMTIQSPADGT
                     VQELATYTVGGVVQAAQKMMVIAPDDDKMDVEVLVLNKDIGFVEQGQDAVVKIESFPY
                     TRYGYLTGKVKSVSHDAVSHEQLGLVYTAVVSLDKHTLNIDGKAVNLTAGMNVTAEIK
                     TGKRRVLDYLLIPLQTKLDESFRER"
     gene            3299..3641
                     /locus_tag="WHR98_001732"
                     /pseudo
     CDS             3299..3641
                     /locus_tag="WHR98_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218854.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3578..3928
                     /locus_tag="WHR98_001733"
     CDS             3578..3928
                     /locus_tag="WHR98_001733"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308377.1"
                     /translation="MQNGGGKIYQTADNVEGIMLLKVVPERTVSADAKTRDPMWDNAA
                     LQTSEGVNFIARFLGFFSDGEYRYVDVLQPNHSDIIRYSGKDFPLNQILNHIHPARYA
                     VTFENNVDSKLRRH"
BASE COUNT          974 a         1102 c         1019 g         1059 t
ORIGIN      
        1 tatacatttg aattaattcg cacttaattt aaatgtgttt ttaactgtgc tttatttaaa
       61 ggcaatgaga atgtgaaagt atcggatcaa tcccaaagca gcctgcactt tcgaaacggg
      121 ggtgcaggct gctttgggaa tttcataacc gtttcagcct gctttattcc gcaaataccg
      181 tttccaaccc taacccgctc tctttcacca agcgcaaata agccagcatg aatttatacc
      241 gtgcttgagc cagtttctgt tctgcttggg cgacttcctg ccgcgcccgt attacttcca
      301 gccggttgcg gatgccgtat tgttggccgg tttcggtcga tttcagtttc aaacggctgc
      361 tttccaaaac ccgttcttgc gccatgattt ggtaacgcgc cgcaccgctt tcggtataag
      421 cctggcgtac ggcgagtttg atgtgccgct cggttgcggt cagctgtgct tcggcggccc
      481 cgtattgcgc ttcggcttca tggattttgc ccgacaattc tccgccggta taaagcggca
      541 aattcaactg tacgccgacg ctcatccctt tgccccgata gtggtagtca ttattctgcg
      601 cagatgaagt gtagaggtta ttctgatagc cgacatgggc agaaacggtg ggatagcggc
      661 tgttctgtgc tgcccgaagc gcctgtccgc tgctttgcag ggcaagctgc tgcatccggt
      721 attcatgatt gttggataag gcaatgcgct gccattcatc cagactgtaa cgttccagct
      781 tgggcagata gcgtgccaac aggttggcgg tatctatggc ctcgatttgt ttgctatcca
      841 ggtcggtgta gtcgttcaac tggttttcat aggtttgttt ctcagccaat acggcgattt
      901 cttgggccag ggcattgtcg taaccggctt tggcttcgtg aatatccagc gcggtggcag
      961 cacctttatt gaataaagcc tgcgcctgcc ttacctgctg ggcataagcc tctttttccg
     1021 ccgcatgggc ggcaacggtg tctcggctga gtaaaacgtt gaaataactt tcggcaactt
     1081 tcaacagcaa ttcttcgcgt gccgcatcga aacgctgttc tgcagcctgc gtatcgaacc
     1141 tgctttggcg gtattgtgca aatttggcag cgtcaaataa ggtttgtccc acctgcacgc
     1201 tccatccctg tgtttcgcgg gtggaagaaa tcgatggcgg ctggcgctgg tagctggcat
     1261 tggcggatac atggggaagg aatgcggcct tggcttgttg ttgccgtgcg cgcactgcat
     1321 cacgctggta atgggacgct tgaaaatcag ccgaatgttg ctgcgccgcc cgccatgctt
     1381 caggcagcgt aaaagccgaa acggatgggg aaagggatag tggcaaggta aaaagtgaaa
     1441 cgggtaggat atatttggaa aaataggatt tcatagccga aaatagttca tgttgcaaat
     1501 agggcgtcag tgtcaggcaa acggaaatac cgtaatcttg cattatcatt agattgagca
     1561 atgtcatccg ggcaatggtt tcaggcagtc tgcatgtccg aaccggcgga taacaaatgc
     1621 ccagtacgga tccgcctatc gctccctaaa gctttcgtcc aatttggttt gcagcgggat
     1681 taacagataa tccagcaccc gccgtttacc cgttttaatc tccgccgtga cattcatgcc
     1741 cgccgtcaga ttcactgctt tgccgtcaat attcaaggta tgtttgtcca gcgacaccac
     1801 cgccgtataa accaagccca actgttcgtg gcttaccgca tcatggctga cacttttcac
     1861 cttgcccgtc agataaccgt agcgcgtata gggaaagctc tcaatcttca ccaccgcatc
     1921 ctgtccctgt tccacaaaac cgatgtcttt gttcaatacc aaaacttcca cgtccatttt
     1981 gtcgtcatcg ggcgcaatca ccatcatttt ttgggcagcc tgcaccacac cgcccaccgt
     2041 ataggtggcc aattcctgca ccgtgccgtc cgcaggcgac tgtattgtca tcagctgctg
     2101 ccgctgcttt gccttatccg tttggccgcg gtattggtca atctgttcgt ttgcttggcg
     2161 cagcgcatcc agcgtatcgc gtttcaggtt ctgcgtattc agcacccgat tctgctccgc
     2221 ctgtgcaatg gccgcctgaa tctgcctcat ctgaccgcgc gtactttcca aatcgttcca
     2281 attgctgacc gatttgctct gctgctccaa aaacgcatgt tccgaaataa aattgtcggc
     2341 ccgcaaacgg cggtagtctg ctgttttctg ctgctcgatc gcccccaccg aaaccagctt
     2401 ctgctcctgc gccttggccg actgcaattc cgcctgatgg ccgcgcaaag ccgactgcaa
     2461 ttgcgcatcc tgcgccgccc atgcctgata ctggtgctgc gccaacacct gcgccgattg
     2521 cacatcggca tcggagagac ctaaagaccg tgcttgcgcc atatcgatat gcggcacggt
     2581 acggctttcc aatgccgcca ataccgcttc ataacgcagt ttggacaatt gggcagcctg
     2641 caaagcctgc tccgactgca ccacatcgct gtctgttccc acagcctcca gttccgccag
     2701 cgtttctccc tgtttcacat gctgcccgtc gcgcacatgt accgccttaa ccaccgccgt
     2761 ttccagcggc tggatggttt tgctgcgccc gcccgacacc gttttgcccg aagccgccgc
     2821 cacaatatcg attttgccga accaggacca caacaaagcc aaaagcgcaa acgccataat
     2881 aaaacgcgcc gcccatttcg gagcggcaga gaccggcgta tcggtcagtt ccaaatgcgc
     2941 gggcaaaaac gcctgttctt ccgccgtgcg tttgggcggt ttcaactggt cgcgcaccgc
     3001 ccaaacattg cgccatacag taatgtatcg agaaagaaag gatttcaggg cggagaaaaa
     3061 cataacgggt ataaccttgg caatatagaa acaggaaaca atataaatat gtaaaggaat
     3121 tttaacggaa agcgcggcag ctgttaaggg aaaggcggga atattgacaa aaaataccca
     3181 agtcgttaca aatattcatt attttactgc gtaacgcaac gctgaagcgc aggctgcttt
     3241 tgagatgcgg caaggttcgg caaaaagcag cctgcacatt taaccacagg aactacccat
     3301 gtttaccaca aacgatttac gccatttcct agaaggtttg gccatcctat tctcaatcgg
     3361 ctattgggat accatgctgc tgttgctttg gtttctcgtc cgctttgcct acaaaaaacc
     3421 ccggcaaaat cctttcaggc agcctgaccg ccgccgctat cctgatgctg tttgtttgga
     3481 ttattcccaa acaattctgc ccgagcaaag aagaaataca ggcacaagaa gagtgggaca
     3541 gaaaatacaa agaagccgaa gccgtgttta acgaacaatg caaaacggcg ggggaaagat
     3601 ttaccagacg gcggacaatg tggaagggat tatgctgttg aaggtagtac ctgagcgtac
     3661 cgtttcggca gatgcaaaaa ccagagaccc gatgtgggac aatgcggctt tacagaccag
     3721 cgaaggcgta aattttattg ctcgtttcct aggatttttt agcgatgggg aataccgcta
     3781 tgtggatgtc ctgcaaccca accattccga tattattcgg tattcaggta aagattttcc
     3841 gctaaatcaa atacttaacc atatacaccc cgcccgttat gcggtaacgt tcgaaaacaa
     3901 tgtcgattcc aagctgcgca ggcactgagt ggcaggtgcg accatacgga ttatcgaccg
     3961 ccaaactgac gaagtgattg ccaagaaaac catctatgtc tttgaaaaag gcttggacgg
     4021 cacgggtggg gcgagaatgc cgtggaagtt tgctatcttg tgcaataaag aaagacttac
     4081 ttcttcagag ccgttatcgg attttgttct tagcgtttta aaaccttata tattgcgtcc
     4141 cttatatatt gcgt
//
LOCUS       DAWGNT010000161         4128 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.161, whole genome shotgun sequence.
ACCESSION   DAWGNT010000161 DAWGNT010000000
VERSION     DAWGNT010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4128
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.161"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            43..675
                     /locus_tag="WHR98_001734"
     CDS             43..675
                     /locus_tag="WHR98_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002231645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEZ2308378.1"
                     /translation="MENTNRVPEQARYDAERRQADEALAGVFPAVSIFGSARTPQNHA
                     DYAFACRLARRLSDSGIAVISGGGPGIMEAANKGAFAGKSVSVGLNIVLPHEQKPNPY
                     QDIALRFSRFAERKAVFFRYSQAYVVMPGGFGTLDELFEILTLVQTGKVPPRPIVLVG
                     KAFWSGLAEWINAQLLARGLISEGAVSLFAISDDEDEIVAYLSEHGLQTA"
     gene            747..2117
                     /gene="purB"
                     /locus_tag="WHR98_001735"
     CDS             747..2117
                     /gene="purB"
                     /locus_tag="WHR98_001735"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEZ2308379.1"
                     /translation="MINPIASLSPLDGRYAQSVEALRPIFSEYGLMKARVKVELNWLK
                     ALAAEPKIVEVPPFSAETLAEIDTVIENFSLEDAAAVKAIEATTNHDVKAIEYWLKER
                     FSGVPEVAAASEFIHFACTSEDINNLSHALMLQEAREAVLLPKLAEIIEKLTGMAHEL
                     AAVPMMSRTHGQPATPSTLGKEIANVVYRLQRQFKNLQAQEFLGKINGAVGNYNAHMV
                     AYPDVDWETHCRNFVEISLGLTFNPYTIQIEPHDYMAEFFQAISRVNTILIDFNRDVW
                     GYISLGYFKQKVKAGEVGSSTMPHKVNPIDFENSEGNLGMANAVLGFLSEKLPISRWQ
                     RDLTDSTVLRNMGVGVGYAVLGFAAHLRGLNKLEPNPAALAADLDATWELLAEPIQTV
                     MRRYGVANPYEKLKDLTRGKGGITPEVLKGFIESLEIPVEAKAKLLELTPALYVGKAE
                     ALAKRI"
     gene            2198..4066
                     /locus_tag="WHR98_001736"
     CDS             2198..4066
                     /locus_tag="WHR98_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEZ2308380.1"
                     /translation="MQAVRYRPEIDGLRAVAVLSVMIFHLNDRWLPGGFLGVDIFFVI
                     SGFLITGIILSEIQNGSFSFRDFYTRRIKRIYPAFIAAVSLASVIASQIFLYEDFNQM
                     RKTVELSAVFLSNIYLGFQQGYFDLSADENPVLHIWSLAVEEQYYLLYPLLLIFCCKK
                     TKSLRVLRNISIILFLILTATSFLPSGFYTDILNQPNTYYLSTLRFPELLAGSLLAVY
                     GQTQNGRRQTANGKRQLLSSLCFGALLACLFVIDKHNPFIPGMTLLLPCLLTALLIRS
                     MQYGTLPTRILSASPIVFVGKISYSLYLYHWIFIAFAHYITGDKQLGLPAVSAVAALT
                     AGFSLLSYYLIEQPLRKRKMTFKKAFFCLYLAPSLILVGYNLYARGILKQEHLRPLPG
                     APLAAENHFPETVLTLGDSHAGHLRGFLDYVGSREGWKAKILSLDSECLVWVDEKLAD
                     NPLCRKYRDEVEKAEAVFIAQFYDLRMGGQPVPRFEAQSFLIPGFPARFRETVKRIAA
                     VKPVYVFANNTSISRSPLREEKLKRFAANQYLRPIQAMGDIGKSNQAVFDLIKDIPNV
                     HWVDAQKYLPKNTVEIYGRYLYGDQDHLTYFGSYYMGREFHKHESLLKHSHGNALQ"
BASE COUNT          952 a         1094 c         1065 g         1017 t
ORIGIN      
        1 tttttgacgg tgtacaatcg ctgtttttga acggaggatg gaatggagaa tacaaaccgt
       61 gtgccggagc aggcacgtta tgatgccgaa cgcaggcagg cagacgaagc attggcgggc
      121 gtgtttccgg cagtcagtat cttcggcagc gcgcgcacgc cgcagaatca tgcggattat
      181 gcgttcgcct gccgtctggc gcggcggctg tcggattcgg gcattgccgt catttcgggc
      241 ggcgggccgg ggattatgga ggcggcaaac aagggcgcgt ttgcagggaa gtcggtttcg
      301 gtggggctga acatcgtttt gccgcacgag cagaaaccga atccgtatca ggacatcgcc
      361 ttgcggtttt cccgttttgc cgaacgcaag gcggtgtttt tccgctattc ccaagcatat
      421 gtcgtgatgc cgggcggctt cgggacgctg gacgaattgt ttgaaatcct gaccttggtg
      481 cagacgggca aagtgccgcc gcgtccgatt gttttggtcg gaaaggcgtt ttggtcgggc
      541 ttggcggagt ggataaacgc gcagcttttg gcgcgcggtc tgatttccga aggggcggtc
      601 tctttgtttg ccatatcgga cgatgaagac gaaatcgttg cgtatctgtc ggaacacggg
      661 cttcagacgg catagcgtcc tgagagtgat gtataattgc aaacaattta acaatttttg
      721 atgtctttcc cgaacaggat gccgaaatga tcaaccccat cgcctcgctt tcccctttag
      781 atggccgtta tgcccaatcc gttgaagcat tgcgcccgat tttttcagag tacggcctga
      841 tgaaggcgcg cgtcaaagtc gaattaaact ggctcaaagc cctggccgcc gagccgaaga
      901 ttgtcgaagt gccgcccttc agtgccgaaa cgcttgccga aatcgacacg gtgattgaaa
      961 acttttcatt ggaagacgca gccgctgtca aagccatcga agccacgacc aatcatgatg
     1021 tcaaagccat tgaatattgg cttaaagaac gcttctccgg cgtgcctgaa gtggcagctg
     1081 ccagcgagtt catccacttt gcctgcacca gcgaagacat caacaacctg tcccacgctt
     1141 taatgctgca agaagcgcgt gaggctgttt tgctgccgaa actggccgaa atcatcgaaa
     1201 aactgaccgg catggcgcat gagttggctg ccgtcccgat gatgagccgc acccacggcc
     1261 agcctgctac accaagcaca ctgggtaaag aaatcgccaa tgtcgtgtac cgcctgcaac
     1321 gccagtttaa aaacctgcaa gcgcaagagt tcctcggcaa aatcaatggc gcagtcggca
     1381 actacaatgc ccatatggtc gcttatcccg atgtggattg ggaaacccat tgccgcaact
     1441 tcgttgaaat cagcctcggc ctgaccttca acccctacac cattcaaatc gagccgcacg
     1501 actatatggc ggaattcttc caagccatca gccgtgtcaa cacgattctg atcgacttca
     1561 accgcgatgt ttggggctat atttctttgg gttacttcaa acaaaaagtc aaagcaggcg
     1621 aagtcggttc ttccaccatg ccgcacaaag tcaacccgat cgactttgaa aactccgaag
     1681 gcaacctcgg tatggcaaac gccgtattgg gcttcttatc cgaaaaactg ccgatttccc
     1741 gttggcagcg cgacctgacc gacagcaccg tattgcgcaa tatgggcgta ggcgtgggct
     1801 atgccgtgtt gggtttcgcc gcccatctgc gcggtctgaa caagctcgaa cccaaccctg
     1861 ccgcgcttgc cgccgatttg gatgccactt gggagctgct cgccgagccg attcaaaccg
     1921 taatgcgccg ttacggtgtc gccaatcctt acgaaaaact gaaagacctg acgcgcggca
     1981 aaggcggcat cacgcccgaa gtgctgaaag gctttatcga atcgttggaa attccggtag
     2041 aagccaaagc aaaattgctt gagctgactc ctgcactgta tgtgggcaag gctgaagcgt
     2101 tggcgaaacg gatttgagcg tttactgaaa ccgatgccgt ctgaacgcgc gttcagacgg
     2161 catttttaag ataacgggac atacgggggc gatatttatg caagctgtcc gatacaggcc
     2221 tgaaattgac ggattgcggg ccgtcgccgt gctatccgtc atgattttcc acctgaatga
     2281 ccgctggctg cccggaggat tcctgggggt ggacattttc tttgtcatct caggattcct
     2341 cattaccggc atcattcttt ctgaaataca gaacggttct ttttctttcc gggattttta
     2401 tacccgcagg attaagcgga tttatcctgc ttttattgcg gccgtgtcgc tggcttcggt
     2461 gattgcctct caaatcttcc tttacgaaga tttcaaccaa atgcggaaaa ccgtggagct
     2521 ttctgcggtt ttcttgtcca atatttatct ggggtttcag caggggtatt tcgatttgag
     2581 tgccgacgag aaccccgtac tgcatatctg gtctttggca gtagaggaac agtattacct
     2641 cctgtatcct cttttgctga tattttgctg caaaaaaaca aaatcgctac gggtgctgcg
     2701 taacatcagc atcatcctat ttctgatttt gactgccaca tcgtttttgc caagcgggtt
     2761 ttataccgat attctcaacc aacccaatac ttattacctt tcgacactga ggtttcccga
     2821 gctgttggca ggttcgctgc tggcggttta cgggcaaacg caaaacggca gacggcaaac
     2881 agcaaatgga aaacggcagt tgctttcatc actctgcttc ggcgcattgc ttgcctgcct
     2941 gttcgtgatt gacaaacaca atccgtttat cccgggaatg accctgctcc ttccctgcct
     3001 gctgacggca ctgcttatcc ggagtatgca atacgggaca cttccgaccc gcatcctgtc
     3061 ggcaagcccc atcgtatttg tcggcaaaat ctcttattcc ctatacctgt accattggat
     3121 ttttattgcc ttcgcccatt acattacagg cgacaaacag ctcggactgc ctgccgtatc
     3181 ggcggttgcc gcgttgacgg ccggattttc cctgttgagt tattatttga ttgaacagcc
     3241 gcttagaaaa cggaagatga ccttcaaaaa ggcatttttc tgcctctatc tcgccccgtc
     3301 cctgatactt gtcggttaca acctgtacgc aagggggata ttgaaacagg aacacctccg
     3361 cccgttgccc ggcgcgcccc ttgctgcaga aaatcatttt ccggaaaccg tcctgaccct
     3421 cggcgactcg cacgccggac acctgcgggg ttttctggat tatgtcggca gccgggaagg
     3481 gtggaaagcc aaaatcctgt ccctcgattc ggagtgtttg gtttgggtag atgagaagct
     3541 ggcagacaac ccgttatgtc gaaaataccg ggatgaagtt gaaaaagccg aagccgtttt
     3601 cattgcccaa ttctatgatt tgaggatggg cggccagccc gtgccgagat ttgaagcgca
     3661 atccttccta atacccgggt tcccagcccg attcagggaa accgtcaaaa ggatagccgc
     3721 cgtcaaaccc gtctatgttt ttgcaaacaa cacatcaatc agccgttcgc ccctgaggga
     3781 ggaaaaattg aaaagatttg ccgcaaacca atatctccgc cccattcagg ctatgggcga
     3841 catcggcaag agcaatcagg cggtctttga tttgattaaa gatattccca atgtgcattg
     3901 ggtggacgca caaaaatacc tgcccaaaaa cacggtcgaa atatacggcc gctatcttta
     3961 cggcgaccaa gaccacctga cctatttcgg ttcttattat atggggcggg aatttcacaa
     4021 acatgaaagc ttgctcaagc attcacacgg caacgcattg cagtagcctg ccttcttgtc
     4081 ggatattgcc tttggcagcc tatgccgctg tttgcccttc ggggcggc
//
LOCUS       DAWGNT010000162         4059 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.162, whole genome shotgun sequence.
ACCESSION   DAWGNT010000162 DAWGNT010000000
VERSION     DAWGNT010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4059
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.162"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(88..906)
                     /locus_tag="WHR98_001737"
     CDS             complement(88..906)
                     /locus_tag="WHR98_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEZ2308381.1"
                     /translation="MKGMDKLRYQQDFLNIRPIFTAGEQEYLTGLSDRLPLSVLTDSV
                     RNIEEIGIDFVYSSAKLEGNTYNQYDTQALLKLGQTAGGKLYSDAVMLINLRESYRHL
                     LSGLDSPEPFDWLDFLKTTHSLISENLLEKGSGGVVRRDSVTISGTDYTPLSNPQSLD
                     TELKWLLQEAPKIENPFDRAVYLHNNLAYLQYFKDCNKRTARNCMTLSLMRSGFFPCV
                     FAPDSYPAYAEAVVAYYETGDYGLFKKYFISAYENTVNKYGPQPDVDIFRNFSL"
     gene            complement(973..2223)
                     /locus_tag="WHR98_001738"
     CDS             complement(973..2223)
                     /locus_tag="WHR98_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEZ2308382.1"
                     /translation="MTKLTRRQIIRRTAGTLFALSPIASAVAKTVRAPQFTAARIWPS
                     HTYTRLTLESTAALKYQHFALDNPGRLVVDIQNANINTVLHGLSQKVMADDPFIRNIR
                     AGQNTPDTVRLVIDLKQPSYAQVFSLPPVGGFKNRLVVDLYPQGMDPDDPMMALLNGS
                     LNKTRRGSPEADLAQNTPAQTERGKNGRRPVIMIDPGHGGEDPGAVSPGGLQEKHVVL
                     SIARETKKQLEALGYNVFMTRNEDVFIPLGVRVAKGRARRADVFVSIHADAFTSPSAR
                     GTGVYMLNTKGATSSAAKFLEQTQNNADAVGGVPTSGNRNVDTALLDMTQTATLRDSR
                     KLGKLVLEELGRLNHLHKGRVDEANFAVLRAPDMPSILVETAFLSNPAEEKLLGSESF
                     RRQCAQSIASGVQRYINTSVLKRG"
     gene            complement(2220..2681)
                     /gene="tsaE"
                     /locus_tag="WHR98_001739"
     CDS             complement(2220..2681)
                     /gene="tsaE"
                     /locus_tag="WHR98_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEZ2308383.1"
                     /translation="MSDLPSISRFLADEAATLDLGAAWSSRLNAPLVIYLEGDLGAGK
                     TTLTRGILRGLGHQGAVKSPTYAIVESYPLERFTLHHFDLYRFSFPEEWEDAGLDELF
                     AANSVCLIEWPQQGGEFTPPADITATLTHDGDGRKCLLTAHTERGRESLPL"
     gene            2883..3695
                     /locus_tag="WHR98_001740"
     CDS             2883..3695
                     /locus_tag="WHR98_001740"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEZ2308384.1"
                     /translation="MENIGRQRPIGVFDSGIGGLTNVRALMERLPMENIIYFGDTARV
                     PYGTKSKATIENFSMQIVDFLLEHDVKAMVIACNTIAAVAGQKIRQKTGNMPVLDVIS
                     AGAKAALATTRHNKIGIIATNTTVNSNAYARAIHRDNPDTLVRTQAAPLLVPLVEEGW
                     LEHEVTRLTVCEYLKPLLADGIDTLVLGCTHFPLLKPLIGREAHNVALVDSAITTAEE
                     TARVLAQEGLLNTDNNNPDYRFYVSDIPLKFRTIGERFLGRTMEQIEMVSLG"
BASE COUNT          901 a          993 c         1190 g          975 t
ORIGIN      
        1 cactataacc gaaggtaagg gaggggtgtg tccactgtgc cgccgcattt gccgcgtgcg
       61 gaagatacgg ataacaaccc cttggaatta aagggagaag ttgcggaaaa tatccacatc
      121 aggctgtggg ccgtacttat ttacggtatt ttcgtatgcc gaaataaaat atttcttgaa
      181 taaaccgtaa tcgccggttt cgtaataggc tacgacagcc tcggcatagg cgggataact
      241 gtcgggggcg aatacgcaag gaaaaaaacc ggagcgcatc agcgacaagg tcatgcagtt
      301 tctggcagta cgtttattgc aatctttaaa atattgaaga tacgccaaat tattatggag
      361 ataaacggcg cggtcgaaag gattttctat tttgggagct tcttgaagca accattttaa
      421 ttccgtatcc aaactttgcg ggttagataa aggggtgtag tctgtcccgc ttatggtaac
      481 gctgtcgcgg cggactacgc cgccggagcc tttttccagt aagttttcgg aaatcaggct
      541 gtgggtggtt tttaagaaat ccaaccagtc aaacggctcg gggctgtcca aaccggacag
      601 caggtgccgg taactttccc tcaggttgat taacattacg gcatccgaat ataacttccc
      661 gcctgcggtt tgcccgagtt taagcaatgc ctgcgtatcg tattgattat aagtgtttcc
      721 ttccaatttg gcagaactgt acacaaaatc gataccgatt tcttcaatat tacgcacgga
      781 gtccgttaaa acagataaag gaagccgatc ggacaatccg gtcaggtatt cttgttcgcc
      841 ggctgtaaaa atggggcgga tatttaaaaa atcctgttgg tatctcaatt tatccatacc
      901 tttcatcata aaaacgcggt ttggggcgga agtaggttta tgcctgcctt catccgacta
      961 ccgccttttc aatcaacccc gcttcaatac ggatgtattg atgtagcgtt ggacacccga
     1021 ggcaatggat tgggcgcact gccggcggaa ggattcgctg cccagcaact tctcttcagc
     1081 agggttggac aggaaggcgg tttcgaccag gatagacggc atatcgggtg cgcgcaaaac
     1141 ggcgaaattg gcttcgtcca ccctgccttt gtgcaagtgg ttgagcctgc ccaattcttc
     1201 aagcaccagt ttgccgagtt tgcggctgtc gcgcagcgtg gcggtttggg tcatatcgag
     1261 cagggcggta tcgacgttgc ggttgccgct ggtcggtacg ccgccgaccg cgtcggcatt
     1321 gttttgcgtc tgttccaaga atttggcggc ggagctggtc gcgcctttgg tgttcagcat
     1381 atagaccccc gttccgcgcg cggaggggct ggtgaaagcg tcggcgtgga tggagacgaa
     1441 tacgtccgcc cgccgtgcgc gccctttggc gacacgcacg cccaaaggga tgaacacgtc
     1501 ttcgttgcgc gtcataaaga cgttgtaacc caaggcttcc aattgttttt tggtttcgcg
     1561 ggcgatggag aggacgacgt gtttttcctg caaaccgccc gggctgacgg cgccggggtc
     1621 ttcgccgccg tgtccggggt cgatcataat gacgggtctg cgcccgtttt tgccgcgttc
     1681 ggtttgtgca ggagtgtttt gagcgaggtc ggcttcaggg gagccgcgac gggttttgtt
     1741 caggctgccg ttaagcagag ccatcatcgg atcgtcggga tccatccctt gcggatagag
     1801 atcgacgacg aggcggtttt taaagccgcc gacggggggg agggaaaaaa cttgcgcgta
     1861 ggaaggctgt ttcaaatcga tgacgaggcg gacggtgtcg ggcgtgttct gaccggcgcg
     1921 tatattgcgg ataaagggat cgtccgccat aaccttctga gacagtccgt gcaatacggt
     1981 attgatgttt gcgttttgta tgtcgacgac cagcctgccc ggattgtcga gcgcgaagtg
     2041 ctggtatttg agcgcggcgg tgctttccag cgtcaggcgg gtgtaggtgt gcgacggcca
     2101 tatccgtgcg gcggtgaatt gcggggcgcg taccgttttg gcaacggcgg atgcgatggg
     2161 gcttagggcg aacagtgtgc cggcggtgcg gcggatgatt tgtcttcgtg tcagtttggt
     2221 catagcggca ggctttcgcg tcctcgttcg gtatgggcgg tcagcaggca ttttctgccg
     2281 tcgccgtcgt gtgtcaatgt tgcggtgatg tcggcaggcg gcgtaaattc cccgccctgt
     2341 tgcggccatt cgatcaggca gacgctgttt gcggcaaaca gttcgtccaa tccggcatct
     2401 tcccattctt cggggaacga gaagcggtag aggtcgaaat ggtgcaaggt gaagcgttcc
     2461 agcggataag attcgacgat ggcgtaggtc gggcttttga ctgcgccctg atgacccaat
     2521 ccgcgcagga tgccgcgtgt cagcgtggtt ttgcccgcac ccaaatcccc ttcgagataa
     2581 atgaccagcg gtgcgtttaa acgggaagac cacgccgcgc ccaaatcgag tgtggcggct
     2641 tcgtcggcaa ggaatcggga gatagagggt aaatcagaca tggaaacggt ttgttgtaag
     2701 gtctagggta ttatgggcag ttttgcaggt tttgcaaact ttgcacccga ggggcggatg
     2761 cttcttgtcc gagcattata acagccaaat ccgcgttctg ctttcagacg gcaacggctg
     2821 tcaagaaaaa gcggcgcgtg tacaatacgc ggattgtatg tttaggacag attggaaaaa
     2881 ggatggaaaa tatcggcagg cagcgaccca tcggcgtttt tgactcggga atcggcggtt
     2941 tgaccaatgt gcgcgcgctg atggaacggc tgccgatgga aaacatcatt tatttcggcg
     3001 acacggcgcg cgtgccttac gggacgaaat ctaaggcgac catcgaaaat ttctcgatgc
     3061 agattgtcga ttttctgctg gaacacgatg tcaaggcgat ggttatcgcg tgcaatacga
     3121 ttgcggcggt ggcggggcag aaaatccgtc aaaagacggg caatatgccg gttttggacg
     3181 tgatttccgc cggcgcgaaa gccgcgctgg caacgacgcg ccacaataaa atcggcatta
     3241 tcgccaccaa taccacagtc aacagcaacg cctatgcgcg cgccatccac agagacaacc
     3301 ccgacacgct tgtccgcacg caggccgcgc cgctgctcgt ccctttggtg gaggaaggtt
     3361 ggttggaaca cgaagttacc cgcctgaccg tatgcgaata cctcaaacca ttgcttgcag
     3421 acggcatcga tacgctggtg ttgggctgca cgcactttcc cttgctcaag cccttaatcg
     3481 gcagggaggc gcacaatgtc gcactggtcg attccgcgat tacgactgcc gaagaaaccg
     3541 cacgcgtcct tgcacaggaa gggttgctca ataccgacaa caacaatccc gactaccgtt
     3601 tttacgtcag cgatattcct ttgaaattca gaaccatcgg cgagcgtttc ttgggcagga
     3661 cgatggagca gattgaaatg gtgtctttgg gttaaaacga tgacggaaag ctgcccgaga
     3721 ttacagaaac ctaaaatccc gtcattccca cgaaagtggg aatctagacc tgtcggtgcg
     3781 gaaacttatc ggataaaacg gtttctttag attttacgtt ctagattccc gctttcgcgg
     3841 gaatgacggg atgcaggttt ctgtgcagat gtattcggat tccctcctgc gcgggaatga
     3901 tgggattttt aaatgtccga atgccgcaaa tgccgtctga aaggcttcag acggcatttt
     3961 ttacacaatt cccaccgttt cccatccttc tcgatacact gtaatctcga aacccgtcat
     4021 tcccgcgcag gcgggaatcc agaccgttcg gtttaggtt
//
LOCUS       DAWGNT010000163         4028 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.163, whole genome shotgun sequence.
ACCESSION   DAWGNT010000163 DAWGNT010000000
VERSION     DAWGNT010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 4028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4028
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.163"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(92..1342)
                     /locus_tag="WHR98_001741"
     CDS             complement(92..1342)
                     /locus_tag="WHR98_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004520001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEZ2308385.1"
                     /translation="MFSKSVTLAQYDPDLAAAIAQEDQRQQDHVELIASENYVSCAVM
                     EAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRVKKLFGAQYANVQPHSGSQAN
                     QAVYASVLKPGDTILGMSLAHGGHLTHGASVNISGKLYNAVTYGLDENEVLDYAEVER
                     LALEHKPKMIVAGASAYALQIDWAKFREIADKVGAYLFVDMAHYAGLVAGGEYPNPVP
                     FCDFVTTTTHKTLRGPRGGVILCRDNTHEKALNSSIFPSLQGGPLMHVIAAKAVAFKE
                     ALQPEFKQYAKQVKINAAAMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAA
                     LGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNEADARVLANLVADVLSNPE
                     DEANLAKVREQVTALCNKYPVYGA"
     gene            complement(1409..1604)
                     /locus_tag="WHR98_001742"
                     /pseudo
     CDS             complement(1409..1604)
                     /locus_tag="WHR98_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221594.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1823..3598)
                     /gene="ggt"
                     /locus_tag="WHR98_001743"
     CDS             complement(1823..3598)
                     /gene="ggt"
                     /locus_tag="WHR98_001743"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEZ2308386.1"
                     /translation="MAKTYLLTALIMSMTISGCQVIHANQGKVNTHSAVITGADAHTP
                     EHATGLIEQKQVIASDFMVASANPLATQAGYDILKQGGSAADAMVAVQTTLSLVEPQS
                     SGLGGGAFVLYWDNTAKTLTTFDGRETAPMRATPELFLDKDGQPLKFMEAVVGGRSVG
                     TPAIPKLMETIHQRYGVLPWGKLFDTPIRLAKQGFEVSPRLAISVEQNQQHLARYPKT
                     AAYFLPNGVPLQAGSLLKNLEFADSVQALAAQGAKALHTGKYAQNIVSVVQNAKDNPG
                     QLSLQDLSDYQVVERPPVCVTYRIYEVCGMGAPSSGGIAVGQILGILNEFSPNQVGYD
                     AEGLRLLGDASRLAFADRDVYLGDPDFVPVPIRQLISKDYLKHRSQLLEQSDKALPSV
                     SAGDFIHEWVSSQAIELPSTSHISIVDKAGNVLSMTTSIENAFGSTLMANGYLLNNEL
                     TDFSFEPIKQGKQVANRVEPGKRPRSSMAPTIVFKAGKPYMAIGSPGGSRIIGYVAKT
                     IVAHSDWNMDIQDAISAPNLLNRFGSYELETGTTALQWQQALNDLGYKTDVRELNSGV
                     QAIIIEPSRLVGGADPRREGRVMGD"
     gene            complement(3766..4028)
                     /locus_tag="WHR98_001744"
                     /pseudo
     CDS             complement(3766..4028)
                     /locus_tag="WHR98_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007116440.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="monothiol glutaredoxin, Grx4 family"
BASE COUNT         1006 a          955 c          953 g         1114 t
ORIGIN      
        1 gattttgggg gattttgcaa aggtttccgc ctgaaacatt atgagatttc aggcggcatt
       61 ggattgcttg gcggaatatt tttaaaaagg cttacgcgcc gtaaacgggg tatttattgc
      121 acaaagcagt tacttgttcg cggactttgg cgaggttggc ttcgtcttcg gggttagaca
      181 atacgtcggc aaccaagttc gccaatacgc gcgcgtcggc ttcgttaaaa ccgcgtgtgg
      241 tcatggcggc ggaaccgatg cggatgccgg aggtaacgaa gggtttttcc ggatcgttcg
      301 gaatggcgtt tttgttgacg gtgatgtgcg ctttgcccaa agcggcttcg gcggctttgc
      361 cggtgatttt catcggttgc aggtcgacga ggaaaacgtg gctttcggtg cggccggaaa
      421 cgatgcgcaa accgcgtttg accagttctt ccgccatggc ggcagcattg attttcactt
      481 gttttgcgta ttgtttgaac tcgggttgca acgcttcttt aaacgctacg gctttggcgg
      541 cgatgacgtg catcagcgga ccgccttgca ggcttgggaa gatggaagag ttcaacgctt
      601 tttcgtgggt attgtcgcgg cacaaaatta cgccgccgcg aggaccgcgc agggttttgt
      661 gggtggtggt ggtaacgaag tcgcagaacg gcacgggatt gggatattcg ccgccggcaa
      721 ccagaccggc atagtgcgcc atatcgacaa agaggtatgc gccgacttta tcggcgattt
      781 cgcggaattt tgcccagtcg atttgcaacg cgtaggcaga cgcaccggcc acaatcattt
      841 taggtttgtg ttcgagagcc aagcgttcca cttcggcata atcgagcact tcgttttcat
      901 ccaagccata agtaacggcg ttgtagagtt tgccggaaat attaacgctc gcgccgtggg
      961 tcaggtggcc gccgtgcgct agagacatac ccaaaatggt gtcgcctggt tttaaaacgg
     1021 aagcgtacac ggcttggttg gcttgcgagc cggagtgcgg ttggacgttg gcgtattgcg
     1081 cgccgaacag ttttttgacg cggtcaatcg ccaattgttc gacaatatcg acgtattcgc
     1141 agccgccgta gtagcgtttg ccggggtagc cttcggcgta tttgttggtc agctgggaac
     1201 cttgcgcttc cattacggcg cagctgacgt agttttcaga ggcaatcagc tcgacgtggt
     1261 cttgctggcg ttggtcttct tgggcaatgg ctgctgccaa atcggggtca tattgtgcga
     1321 gggtaacgct ttttgaaaac atgttctcgg ctcctttgtg taatcagggt atcatgagtg
     1381 ttttttgtat aaaaaaatac ttcaaaacct aaggcagata gtccataatg cgtaaatttt
     1441 ctttggcatt atcaggtaat ttatttaaca tgctggtttt tagcgtctca ttacctttat
     1501 gttagtacaa ggctacccaa aggcaataca tcaaatggta aattttcggc agtttgtgca
     1561 aaatcaatca aataaccagc accaaccaca tctttatcag ccataacccg ctgatacacc
     1621 acttgccaag acaactctcc tgccccacca tgtcttaaaa tcagatgaat ggcttgtaat
     1681 gctgtgtttg gcgtctcaca aattgcgaag atctgctcag aagcttgctt gatggcttgt
     1741 atttttgttt gattactcac aatttccccc tattttaata ttaacttaat gcggtcaaat
     1801 tcacaaaata caagcttcac ctctaatcac ccatcactcg accttctcgg cgtggatcgg
     1861 caccaccaac cagcctgctt ggctcgataa taatggcttg aacacctgaa tttagctcac
     1921 gcacgtcagt cttatagccc aaatcattta atgcttgttg ccactggagg gcggttgtac
     1981 ccgtttctag ttcatagcta ccaaagcgat ttaataaatt gggtgcactg atggcatctt
     2041 ggatatccat attccagtca ctatgtgcca caatcgtctt agcgacatag ccaatgatac
     2101 ggctaccacc tggggagccg attgccatat aaggcttgcc tgctttaaat acgatggttg
     2161 gtgccattga ggagcgtggt ctcttgccgg gctcgacacg attggcgacc tgtttgccct
     2221 gctttattgg ctcaaaacta aagtctgtca gctcattatt cagcaggtag ccatttgcca
     2281 tcaaagttga gccaaacgca ttttcaatgg aagtcgtcat tgatagcaca ttgcccgcct
     2341 tatccacaat tgatatatga ctggtagaag gtaactcaat cgcttgtgag gacacccact
     2401 catgaataaa atcgcctgca gatacgctag gcaatgcctt atccgactgc tcaagcagct
     2461 ggctgcgatg ttttaggtag tctttagaaa tcaactggcg aatgggtact ggtacaaaat
     2521 cagggtcgcc caaatataca tcacgatccg caaacgcaag cctagaagcg tcgcccaaga
     2581 gacgtaaacc ttcagcatca taccccacct gattgggtga aaattcattt aaaatcccca
     2641 aaatttgacc cacagcaatc ccacctgagc ttggtgcacc cataccgcat acttcataaa
     2701 tacgataagt cacacaaaca ggcgggcgtt ccaccacttg ataatcagat aaatcttgta
     2761 aggataattg accggggtta tccttagcat tttggacaac tgaaacgata ttttgggcat
     2821 atttaccagt atgcagagct tttgcacctt gagctgctaa cgcctgaaca ctgtcagcaa
     2881 attctaaatt tttcagcaag ctgcctgctt gtagcggcac accattcggc aaaaaataag
     2941 cggctgtttt tggatagcgt gccaaatgct gctgattttg ctcaaccgag atggcaagcc
     3001 ttggcgacac ctcaaagcct tgttttgcca agcggatcgg tgtatcaaat aattttcccc
     3061 aaggcaatac accgtatcgc tgatgtattg tctccatcag tttagggata gcaggcgtac
     3121 ccaccgagcg accaccgacc accgcttcca taaatttcaa tggttgacca tctttatcca
     3181 aaaataattc cggcgtcgca cgcatcggtg ccgtctcacg cccatcaaat gtggtcaatg
     3241 ttttggcggt attatcccaa tacaacacaa atgcaccacc gcccaagcct gacgactgtg
     3301 gctctaccaa gcttagtgtc gtctgcaccg ccaccatcgc atctgcagcg ctaccgcctt
     3361 gctttaagat atcatagcca gcttgtgttg ctaatggatt ggctgacgct accataaaat
     3421 cacttgcaat cacctgcttt tgttcgatca gtcccgttgc atgttcaggc gtgtgagcgt
     3481 ctgcacctgt gatgacagca gaatgagtat taaccttacc ttgattggca tggatgactt
     3541 gacatccaga gattgtcata gacattatca atgcagtcaa taaatatgtt ttagccacaa
     3601 gcactccttc gcctgagttt gattgatgat tcatacaagg catgctgatt attgtattta
     3661 atatggctaa ataattcaat ccaaactatc aatcttgacc atcaaaaaaa gaccgctaat
     3721 gtcatcagca gtcttttttg atatttattt taagatatta agtaatcaga cctttgggct
     3781 atgctcttca atgagtggtt ttagctcacc tgattggtac atttgtagga taatatcact
     3841 accaccgatt aactcaccat taacccaaag ctgtggaaag gttggccgat tggcgatgag
     3901 tggtagagta ctgcgaattt ctgggttttc taggatatta acaaaagcaa agggtctgcc
     3961 aattgggtca gcacctctac tgcacgcgct gaaaatccac attggggaaa ctggggcgtg
     4021 cctttcat
//
LOCUS       DAWGNT010000164         3993 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.164, whole genome shotgun sequence.
ACCESSION   DAWGNT010000164 DAWGNT010000000
VERSION     DAWGNT010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3993
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.164"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(94..990)
                     /gene="argB"
                     /locus_tag="WHR98_001745"
     CDS             complement(94..990)
                     /gene="argB"
                     /locus_tag="WHR98_001745"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEZ2308387.1"
                     /translation="MESENIISAADKARILAEALPYIRRFSGSVAVIKYGGNAMTEPA
                     LKEGFARDVVLLKLVGIHPVIVHGGGPQINAMLEKVGKKGEFVQGMRVTDKEAMDIVE
                     MVLGGHVNKEIVSMINTYGGHAVGVSGRDDHFIKAKKLLIDTPEQNGVDIGQVGTVES
                     IDTGLVKGLIERGCIPVVAPVGVGEKGEAFNINADLVAGKLAEELNAEKLLMMTNIAG
                     VMDKTGNLLTKLTPKRIDELIADGTLYGGMLPKIASAVEAAVNGVKATHIIDGRVPNA
                     LLLEIFTDAGIGSMILGSGEDA"
     gene            1160..2290
                     /locus_tag="WHR98_001746"
     CDS             1160..2290
                     /locus_tag="WHR98_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase family protein"
                     /protein_id="HEZ2308388.1"
                     /translation="MIKISTRFDAGSVVVKDLTDPSNIRLALRPDNASDFAQWFYFRL
                     QGAAYQNCIMHFENAAEAAYPKGWEGYQACASYDRRNWFRVPTSYENGVLTVNHTPLS
                     NSVYYAYFEPYSEEQHLNLLGDAQGSGLCRIDDLGSTVQGRDINLLTIGNQVESDLKI
                     WITARQHPGETMAEWFVEGLLGRLLDPQDPTARTLLDRATFYIVPNMNPDGSALGNLR
                     TNAAGANLNREWENPTLEKSPEVFFVREKMLETGVDLFLDIHGDEGLPFIFVAGTEGV
                     PNYNPRISALETQFKTALLNASPDFQDEYGYEKDAPGQANMTLATNWVGNRFNCLAYT
                     LEMPFKDNANLPDDDFGWNGQRSLRLGEAALSAILNIIGDLR"
     gene            2366..3217
                     /locus_tag="WHR98_001747"
     CDS             2366..3217
                     /locus_tag="WHR98_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEZ2308389.1"
                     /translation="MITHPQFDPVLISIGPLAVRWYALSYILGFILFTFLGRRRIAQG
                     LSVFTKESLDDFLTWGILGVIFGGRLGYVLFYKFSDYLAHPLDIFKVWEGGMSFHGGF
                     LGVVIAIWLFGRKHGIGFLKLMDTVAPLVPLGLASGRIGNFINGELWGRVTDINAFWA
                     MGFPQARYEDLEAAAHNPLWAEWLQQYGMLPRHPSQLYQFALEGICLFAVVWLFSKKQ
                     RPTGQVASLFLGGYGIFRFIAEFARQPDDYLGLLTLGLSMGQWLSVPMIVLGIVGFVR
                     FGMKKQH"
     gene            complement(3300..3962)
                     /locus_tag="WHR98_001748"
     CDS             complement(3300..3962)
                     /locus_tag="WHR98_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecA family protein"
                     /protein_id="HEZ2308390.1"
                     /translation="MDSQKFTEASKRRLSELLDAKSEQGNTMRCDEVQGFMTALLSGP
                     DKLTPLDWLPEVLGDESQFTAAERSEIERLVLAMAMETTAAMSDKKLPDLWLYENEDG
                     GSDFYTWCNAYLYGLDIVPTDWFEAVDDEAFEELFYPIMALGGIYDEEDNGTIRLQFT
                     EGELAELESELPYALADIYRYWQAVINKPQTVRREGEKTGRNDPCPCGSGRKYKACCG
                     KN"
BASE COUNT          877 a         1178 c          976 g          962 t
ORIGIN      
        1 tcaggaatga cggtttggaa attgcccgaa accccaaaaa cagaaaccgg acaacccggc
       61 ttcccgccca agccggaatt ttccgacttt gcttcaggca tcttccccac tgcccaaaat
      121 catcgaaccg atacccgcat cggtaaagat ttccagcaaa agcgcgttag gcaccctgcc
      181 gtcgatgatg tgcgtggcct tcacgccgtt gacggcggct tcgaccgcag aagcgatttt
      241 cggcagcata ccgccataca gcgtgccgtc ggcaatcagt tcatcaatcc gtttcggcgt
      301 gagtttggtc agcagattgc ccgttttgtc catcacaccg gcgatattcg tcatcatcaa
      361 gagtttttcg gcgttcaatt cttccgccaa tttgcctgcc accaaatcgg cgttgatgtt
      421 gaacgcttcg cctttttcac ctacgccgac gggggcgacg acgggaatgc agccgcgttc
      481 tatcagccct ttaaccaaac cggtatcgat gctttccacc gtaccgacct gtccgatgtc
      541 cacgccattc tgttcgggcg tatcgatcaa aagtttcttc gccttaatga aatgatcgtc
      601 gcgtccgctc acgccgaccg cgtgtccgcc atatgtgtta atcatcgaca cgatttcttt
      661 attgacatgc ccgcccaaca ccatttcgac aatatccatc gcctctttgt cggtaacgcg
      721 cattccttgg acaaactcac cctttttgcc gactttttca agcatcgcat tgatctgcgg
      781 cccgccgccg tgaacgatga cgggatgaat gccgaccagc ttcagcagca cgacatcgcg
      841 ggcaaaccct tctttcaagg caggttcggt catcgcgttg ccgccgtatt tgatgacggc
      901 gaccgaaccg gaaaaccggc ggatgtaagg cagcgcttcg gcaaggatac gcgccttgtc
      961 ggcggcggaa ataatgtttt cagactccat aacggctccc tattgttgac aatttcggct
     1021 tatgttaacg ccaaacgccg tctgaaacaa tcttcagacg gcatccggca gactttcggg
     1081 caggttgaag ccttgcgata cgggcggtaa aatcgcggtt tatccggttc gagaaaccgg
     1141 cgacagcaag gactttccca tgattaaaat cagcacccgc ttcgatgccg gctcggtcgt
     1201 cgtcaaagac ctgaccgatc cttccaacat ccgcctcgcc ctgcgtcccg acaacgcctc
     1261 cgattttgca caatggttct acttccggct gcaaggcgcg gcatatcaaa actgcatcat
     1321 gcattttgaa aacgcggcag aagccgccta cccgaaaggc tgggaaggct atcaggcgtg
     1381 tgcctcatac gaccgccgca actggttccg cgtaccgact tcctacgaaa acggcgtact
     1441 gaccgtcaat catacgccgc tgtccaacag cgtgtattac gcctatttcg aaccttactc
     1501 cgaagaacag catttaaacc tcctcggcga cgcgcaaggc agcggcctgt gccgcatcga
     1561 cgacttgggc agcaccgtgc aagggcgcga catcaatctg ctgaccatcg gcaatcaggt
     1621 cgaaagcgat ctgaaaatct ggattaccgc ccgccagcat ccgggcgaaa ccatggcgga
     1681 atggtttgtc gaggggctgc tcggcaggct gctcgatccg caagacccga cagcgcgcac
     1741 cctgctcgac cgcgccacgt tctatatcgt ccccaatatg aaccccgacg gttcggcact
     1801 gggcaacctt cgtaccaacg ccgccggtgc gaacctcaac cgcgaatggg aaaatccgac
     1861 tttggaaaaa agccccgaag tgttcttcgt gcgcgaaaaa atgctggaaa ccggcgtgga
     1921 tttgttcttg gacatccacg gcgacgaagg gctgcccttt atctttgttg caggaactga
     1981 aggcgtgcca aactacaatc cgcgcatttc cgcgttggaa acacagttca aaaccgccct
     2041 tttgaacgcc agccccgatt tccaagacga atacggttac gaaaaagatg cgcccggtca
     2101 ggcaaacatg accttggcaa caaactgggt cggcaaccgt ttcaactgcc ttgcctatac
     2161 gttggaaatg ccgttcaaag acaatgccaa cctgcccgac gacgatttcg gatggaacgg
     2221 tcaacggtcg ttgcgcttgg gcgaagccgc gttgtccgcc atcctcaaca tcatcggcga
     2281 tttgcgctga aacccttatt gcagaaatgc cgtctgaagc atcatgcctt tcagacggca
     2341 tttgaaattg aaatcaagga acatcatgat tacccatccc caattcgatc ccgtcctcat
     2401 cagtatcggc ccgcttgccg tccgctggta tgccctaagc tacatcctcg gatttattct
     2461 ttttaccttt ctcggcagaa ggcgcatcgc gcaaggcttg tccgttttta ccaaagaatc
     2521 gcttgacgac ttcctgacat ggggcatttt gggcgtaatt tttggtgggc gtttgggtta
     2581 cgtcctgttt tacaagtttt ccgactacct cgcccatccg cttgatattt tcaaggtatg
     2641 ggaaggcgga atgtcgttcc acggcggctt tttgggtgta gttattgcca tatggttgtt
     2701 cggccgcaaa cacggcatcg gcttcctcaa actgatggac acggtcgcac cgctcgttcc
     2761 gctgggtctc gcttcgggac gtatcggcaa cttcatcaac ggcgaacttt ggggacgcgt
     2821 taccgacatc aacgcatttt gggcaatggg cttcccgcag gcgcgttacg aagacctcga
     2881 agccgccgcg cacaatccgc tttgggcaga atggctgcaa caatacggta tgctgccgcg
     2941 tcatccctcg cagctttatc agtttgcact tgaaggcatc tgcctgttcg ccgtcgtttg
     3001 gctgttctct aaaaaacagc ggccgaccgg acaagtcgcc tcgctcttcc tcggcggcta
     3061 cggcatattc cgcttcattg ccgaatttgc acgccaaccc gacgactatc tcgggctgct
     3121 gaccttgggg ctgtcgatgg ggcaatggtt gagcgtcccg atgattgttt tgggtatcgt
     3181 cggctttgtc cggttcggca tgaaaaaaca gcactgaccg cctgtgaaaa ataccgtctg
     3241 aaacatggaa atccggtttc agacggcatt tttacgtttg gttcatggaa acaaacgctt
     3301 caattcttac cgcaacacgc cttgtatttt ctgccgctgc cgcacggaca gggatcgttc
     3361 ctgcctgttt tttcgccttc cctgcggacg gtttgcggct tgttgatgac cgcctgccag
     3421 tagcggtaga tatccgccaa tgcataaggc aactcggatt ccagttccgc cagctcgcct
     3481 tctgtgaatt gcagacggat agtgccgttg tcctcttcgt cgtaaatacc gcccaatgcc
     3541 atgatgggat aaaacaactc ttcaaacgct tcatcatcga cggcttcaaa ccaatcggtc
     3601 ggcacaatat ccaaaccgta aagataagca ttgcaccatg tgtaaaaatc gctgccgccg
     3661 tcttcgtttt catacagcca caaatcgggc agttttttat ccgacatcgc ggcggttgtt
     3721 tccatcgcca ttgccaaaac cagccgttcg atttcggaac gttcggcggc ggtaaattgc
     3781 gattcgtcgc ccaacacttc gggcagccag tcgagcggtg tcaatttgtc cggcccgctc
     3841 aacagcgccg tcataaaacc ttgaacctcg tcgcaacgca tcgtgttgcc ttgttcgctt
     3901 ttggcatcca acaattcgct caaccgccgt ttggatgctt cggtaaattt ttgggaatcc
     3961 atcattttcc ttttcaaatg ggttttgcgc cct
//
LOCUS       DAWGNT010000165         3919 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.165, whole genome shotgun sequence.
ACCESSION   DAWGNT010000165 DAWGNT010000000
VERSION     DAWGNT010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3919
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.165"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            127..2712
                     /gene="acnB"
                     /locus_tag="WHR98_001749"
     CDS             127..2712
                     /gene="acnB"
                     /locus_tag="WHR98_001749"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003679951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEZ2308391.1"
                     /translation="MLEAYRKAAAERAALGIPALPLNAQQTADLVELLKSPPAGEGEF
                     LVELLAHRVPPGVDDAAKVKASFLAAVAEGSASSPLISPEYATELLGTMLGGYNIHAL
                     IELLDDDKLAPIAAKGLKHTLLMFDSFHDVQEKAEKGNKYAQEVLQSWADAEWFTSRA
                     KVPEKITVTVFKVDGETNTDDLSPAPDAWSRPDIPLHALAMLKNPRDGITPDKPGEVG
                     PIKLLEELKAKGHPVAYVGDVVGTGSSRKSATNSVIWHTGEDIPFVPNKRFGGVCLGG
                     KIAPIFFNTQEDSGALPIEVDVSALKMGDVVDILPYEGKIVKNGETVAEFELKSQVLL
                     DEVQAGGRINLIIGRGLTAKAREALKLPASTAFRLPQAPAESKAGFTLAQKMVGRACG
                     LPEGQGVRPGTYCEPRMTTVGSQDTTGPMTRDELKDLACLGFSADMVMQSFCHTAAYP
                     KPVDVKTHKELPAFISTRGGVSLRPGDGVIHSWLNRLLLPDTVGTGGDSHTRFPIGIS
                     FPAGSGLVAFAAATGVMPLDMPESVLVRFSGKLQPGVTLRDLVNAIPLYAIKQGLLTV
                     SKAGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTVKLNKEPIIEYMKSN
                     VVLMKNMIANGYQDPRTLERRIKAMEKWLANPELLEADKDAEYAAVIEINMDDIKEPI
                     IACPNDPDDVCFMSERSGTKIDEVFIGSCMTNIGHFRAASKLLEGKADTPVRLWIAPP
                     TKMDAKQLSDEGHYGVLGRAGARMEMPGCSLCMGNQAQVREGATVMSTSTRNFPNRLG
                     KNTFVYLGSAELAAICSKLGKIPTVEEYQANIGIINEQGDKIYRYMNFNEIDSYNEVA
                     ETVNV"
     gene            2854..3849
                     /locus_tag="WHR98_001750"
     CDS             2854..3849
                     /locus_tag="WHR98_001750"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEZ2308392.1"
                     /translation="MNLKNRHFLKLLDFTPEEITAYLDLAAELKAAKKAGREIQRMKG
                     KNIALIFEKTSTRTRCAFEVAARDQGAGVTYLEPSASQIGHKESIKDTARVLGRMYDA
                     IEYRGFGQEVVEELAKYAGVPVFNGLTNEFHPTQMLADALTMREHSGKPLNQTAFAYV
                     GDARYNMGNSLLILGTKLGMDVRIGAPQSLWPSEGIIAAAHAAAKETGAKITLTENAH
                     EAVKNVDFIHTDVWVSMGEPKEVWQERIDLLKDYRVTPELMAASGNPQVKFMHCLPAF
                     HNRETKVGEWIYETFGLNGVEVTEEIFESPASIVFDQAENRMHTIKAVMVAALGD"
BASE COUNT         1004 a         1134 c          993 g          788 t
ORIGIN      
        1 ttacctgtca taacagttcc atttttgtta aaactagtct atgatagcgg tacaaatatt
       61 gtttacaata tttaacgcaa atcatttgca acccgacaaa agaaaaacag aaaaaggaac
      121 aaagagatgt tagaagccta tcgtaaagcc gccgccgagc gcgccgccct cggcattccc
      181 gccctccctt tgaacgcgca gcaaaccgcc gatttggttg agctgctgaa aagcccgccc
      241 gcaggcgaag gcgagttctt ggtcgaactg cttgcccacc gtgttccgcc cggtgtggac
      301 gatgccgcca aagtcaaagc ctcattcctg gctgccgttg ccgaaggcag cgcgtccagc
      361 ccgctgatct cccccgaata tgcgaccgaa ctcttaggta cgatgctcgg cggttacaat
      421 atccacgcct taatcgaact cttggacgac gacaaactcg cgcccattgc cgccaaaggc
      481 ttgaaacata cgcttctgat gttcgattcc ttccacgacg ttcaggaaaa agccgaaaaa
      541 ggcaacaaat acgcgcaaga agttttgcaa tcttgggcag atgccgaatg gtttacctca
      601 cgcgccaaag ttcccgaaaa aatcaccgtt accgttttca aagttgacgg cgaaaccaat
      661 acagacgacc tctcccccgc gcccgacgcg tggagtcgtc ccgatattcc gctgcacgcg
      721 ctggcaatgc tgaaaaaccc gcgcgacggc atcacgcccg acaaaccggg cgaagtcggt
      781 ccgattaaat tgttggaaga actcaaagcc aaaggccatc cggttgctta cgtcggcgac
      841 gtggtcggta ctggttcttc acgcaaatcc gcgaccaact ccgtcatttg gcataccggc
      901 gaagacattc cgttcgtgcc gaacaaacgc ttcggcggcg tatgtttggg cggcaaaatc
      961 gcgccgattt tcttcaatac ccaagaagat tccggcgcgc tgccgattga agtcgatgta
     1021 tctgctctaa aaatgggcga tgtcgtcgat atcctgcctt atgaaggcaa aatcgtgaaa
     1081 aacggcgaga ctgttgccga gtttgaattg aaatcacaag tattgctgga cgaagtgcaa
     1141 gccggcggcc gtatcaacct gattatcggc cgaggtctga ccgccaaagc gcgcgaagcc
     1201 ctgaaactgc ctgcctctac tgcattccgc ctgccgcaag cgcctgccga aagcaaagcc
     1261 ggtttcacct tggcgcaaaa aatggtcggc cgcgcctgcg gtctgcccga aggacaaggc
     1321 gtgcgcccgg gtacttactg cgaaccgcgt atgacgacgg tcggctcgca agacacgacc
     1381 ggcccgatga cccgcgacga gttgaaagac ttggcttgtt tgggcttctc cgccgatatg
     1441 gtgatgcagt ctttctgcca caccgccgcc tatccgaaac ctgtcgatgt aaaaacccat
     1501 aaagaactgc ccgcctttat ttccacccgt ggcggcgtgt cactgcgtcc gggcgacggc
     1561 gtcatccact cgtggctcaa ccgcctgctg ctgcccgata ccgtcggcac cggcggcgac
     1621 agccataccc gtttccccat cggtatttcc ttccccgccg gctccggctt ggttgccttt
     1681 gccgccgcaa cgggcgtaat gccgctcgat atgcccgagt ctgtattggt acgcttcagc
     1741 ggcaagctgc aaccgggcgt aaccctgcgc gatttggtga acgccatccc gctgtacgca
     1801 attaaacaag gtttgctgac cgtttccaaa gccggtaaga aaaacatctt ctctggccgc
     1861 atcctcgaaa tcgaaggcct gcccgatttg aaagtggaac aagcctttga attgaccgac
     1921 gcatccgccg aacgctccgc cgccggctgt accgtgaagc tcaataaaga gccgattatc
     1981 gagtacatga aatccaacgt cgtgttgatg aaaaacatga ttgccaacgg ctatcaagac
     2041 ccgcgcactt tggaacgccg catcaaagct atggaaaaat ggctggcaaa tcccgagttg
     2101 ctcgaagcgg ataaagatgc cgaatacgcc gccgtgattg aaatcaacat ggacgacatc
     2161 aaagagccga ttatcgcctg cccgaacgac ccggacgacg tgtgcttcat gtccgaacgc
     2221 tccggcacca aaatcgacga agtattcatc ggttcgtgta tgaccaacat cggccacttc
     2281 cgcgccgcct ccaaactttt ggaaggcaag gcagacaccc ccgtccgcct gtggattgcg
     2341 ccgccgacca aaatggacgc gaaacaattg tccgacgaag gacactacgg cgtactcgga
     2401 cgtgccggcg cgcgtatgga aatgccgggt tgctccttat gtatgggtaa tcaggcgcaa
     2461 gtacgcgaag gtgcgaccgt tatgtccacc tccacccgca acttcccgaa ccgtttgggt
     2521 aaaaacacct ttgtttacct cggttcggcg gaattggcag cgatttgctc caaactgggt
     2581 aaaatcccga ccgttgaaga atatcaagcc aatatcggca tcatcaacga acagggcgat
     2641 aaaatctacc gctatatgaa cttcaacgaa atcgacagct acaacgaagt agccgagacc
     2701 gtgaacgttt aatccccgtc atccgtatga agtaagggat tgaccgcaat gccgtctgaa
     2761 caaccttcag acggcattgc aacattccgc taacccttct ttccgcaaac gctgcaaata
     2821 cggcgttcac gcccccacat aaaggaaacg acagtgaacc tgaaaaaccg ccattttctg
     2881 aaacttttag acttcacgcc ggaagaaatc accgcctacc tcgaccttgc cgccgaattg
     2941 aaagccgcca aaaaagcagg gcgcgagatt cagcggatga aagggaaaaa catcgccctg
     3001 atttttgaaa aaacctctac tcggacgcgc tgcgcgtttg aagtcgccgc gcgcgatcaa
     3061 ggcgcgggag tgacttattt agagccgtcc gccagccaaa tcgggcataa ggaaagcatc
     3121 aaagacaccg cccgcgtgtt gggcaggatg tacgatgcca tcgaatatcg cggtttcggt
     3181 caggaagttg ttgaagaatt ggcgaaatac gcgggcgtac ccgtgttcaa cgggctgacc
     3241 aacgagttcc atcccacaca aatgcttgcc gacgcactga ctatgcgcga acacagcggc
     3301 aaacctttga accaaaccgc gtttgcctac gtcggcgacg cgcgttacaa catgggcaat
     3361 tccctgctga ttttagggac aaaattgggg atggacgtgc gtatcggcgc accgcaaagc
     3421 ctgtggccgt ctgaaggcat tattgccgcc gcacacgccg ccgccaaaga aaccggcgca
     3481 aaaattaccc tgaccgaaaa cgcgcatgaa gccgtgaaga atgttgattt tattcatacc
     3541 gatgtgtggg tcagcatggg cgagccgaaa gaagtctggc aggaacgcat cgatttgctg
     3601 aaagattacc gcgttacgcc cgaactgatg gcggcatcgg gcaatccgca agtcaaattc
     3661 atgcactgcc tgcccgcctt ccacaaccgc gaaaccaaag tcggcgaatg gatttacgaa
     3721 accttcgggc tgaacggtgt ggaagttaca gaagaaatat tcgaaagccc cgccagcatc
     3781 gtgttcgatc aggcggaaaa ccgtatgcac acgattaaag cggtaatggt cgcggctctg
     3841 ggcgactgac agaactgtgc ctgtttaaat tcatccgcaa cacagatacc gtctgaacac
     3901 gatgttcaga cggtatcca
//
LOCUS       DAWGNT010000166         3904 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.166, whole genome shotgun sequence.
ACCESSION   DAWGNT010000166 DAWGNT010000000
VERSION     DAWGNT010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.166"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..373)
                     /locus_tag="WHR98_001751"
     CDS             complement(<1..373)
                     /locus_tag="WHR98_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HEZ2308393.1"
                     /translation="MRKSRLSRYKQNKLIELFVTGVTARTAAELVGVNKNTAAYYFHR
                     LRLLIYQNSPHLEMFDGEVEADESYFGGQRKGKRGRGAAGKVAVFGLLKRNGKVYTVT
                     VPNTRTATLFPIIREQVKPDSI"
     gene            632..2104
                     /gene="pyk"
                     /locus_tag="WHR98_001752"
     CDS             632..2104
                     /gene="pyk"
                     /locus_tag="WHR98_001752"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEZ2308394.1"
                     /translation="MNQTSRDLTRISHNTKIVATLGPGSNNVELLEDMIRVGGLNVVR
                     FNFSHGTPEFHQENARIVREAAKRAGQEIAIIADLQGPKIRVGKIAGGGIELNKGETL
                     VLDAALEGEGTREAVGLDYRDLPDDVAAGDVLWLDDGLLTLTVESVEGSRIITRVENS
                     HVLKSNKGINKRGGGLSAGALTEKDFRDLKTAIAIGCDYLAISFVKSAEDLHIARAKV
                     EEEMKGSTAVRPGLVSKIERVEAIENLDEIILAGDGIMVARGDLAVEVGHAAVPALQK
                     RMIRRARELRRFSITATQMMESMITNPVPTRAEVSDVANAVLDGTDAVMCSAETAVGA
                     YPFETVSQMAIICAAAEKEQDSLNGVAEQVEYPEAVSTNLAVAGGAVSVARAVHAKAI
                     VALTESGSTAFEISRHNITLPIFALTPSVSAQRRMAMYRGVRPLILATSTDHDTALNE
                     VETMLVEHNILHSGDQYIITSGSQMRESGSTNTLEVLRVK"
     gene            2414..3805
                     /locus_tag="WHR98_001753"
     CDS             2414..3805
                     /locus_tag="WHR98_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEZ2308395.1"
                     /translation="MTPSALKKTVLLLGTAFAAASAQASGYHFGTQSVNAQSTANAAA
                     AEAADASTIFYNPAGLTKLDSSQISVNANIVLPSIHYEADSATDFTGLPVQGSKSGKI
                     TKTTVAPHIYGAYKVNDNLTVGLGVYVPFGSATEYEKDSVLRHNINKLGLTSIAVEPV
                     AAWKLNDRHSFGAGIIAQHTSAELRKYADWGIMEKAKALKETPPNPTKAAQIKADGHA
                     DVKGSDWGFGYQLAWMWDINDRARVGVNYRSKVSHTLKGDAEWAADGAAAKAMWSTML
                     AANGYTANEKARVKIVTPESLSVHGMYKVSDKADLFGDVTWTRHSRFDKAELVFEKEK
                     TVVKGKSDRTTITPNWRNTYKVGFGGSYQISEPLQLRAGIAFDKSPVRNADYRMNSLP
                     DGNRIWFSAGMKYHIGKNHVVDAAYTHIHINDTTYRTAKASGNDVDSKGASSARFKNH
                     ADIIGLQYTYKFK"
BASE COUNT         1018 a         1153 c          957 g          776 t
ORIGIN      
        1 caatgctgtc aggtttcact tgttcacgga taataggaaa taaagtagcg gttcgagtat
       61 tcggtactgt aaccgtataa accttaccat ttcgcttcaa aagaccgaat acggcgactt
      121 taccggcagc accgcgaccg cgtttgcctt tgcgttgtcc gccaaaataa ctttcatctg
      181 cttctacttc gccatcaaac atttccaaat gcggactgtt ttgataaata agtaatcgta
      241 aacgatgaaa ataataggct gcggtatttt tattaacgcc tactaactct gctgccgttc
      301 ttgcagttac acctgtgaca aacagctcaa tgagtttatt ttgtttatac cggcttagac
      361 gactttttct catagggata attctaactt aatttgaatt tccctagtta tctaggacag
      421 ccccaaaata aatttagcct aagtcataaa accgtgtaat tttgcaccaa aaaaggcggt
      481 ttgcaggtaa aatatcaaac tattaattta aatcatattt ttacagaata ttccgccgcg
      541 ttcatcaaat ggcatcaaac cggttccaaa tttctgtaat tttgcaacaa aataccgcaa
      601 agcacccgat tgagaccgaa aggactttca tatgaaccag acaagccgcg atctgacccg
      661 catcagccac aacaccaaaa tcgtcgccac ccttgggccg ggcagcaaca acgtagaact
      721 gttggaagat atgatccgcg tcggcggcct gaacgtcgtc cgcttcaact tcagccacgg
      781 cacgcccgaa ttccatcagg aaaacgcccg catcgtgcgc gaggcggcaa aacgcgccgg
      841 acaggaaatc gccatcattg ccgacctgca gggcccgaaa atccgcgtgg gcaaaatcgc
      901 cggcggcggc atcgaattga acaaaggcga aacgctggta ctggatgccg cgctcgaagg
      961 cgaaggcacg cgcgaggcgg tcggtttgga ctaccgcgac ctgcccgacg acgttgccgc
     1021 aggcgatgtc ttgtggctgg acgacggcct gctgaccctg accgtggaat ccgtcgaagg
     1081 cagcaggatt atcacaaggg tggaaaacag ccacgtcctg aaaagcaaca agggcatcaa
     1141 caaacgcggc ggcggtctgt ccgcaggcgc gttgaccgaa aaagacttcc gcgacctgaa
     1201 aaccgcgatt gccatcggtt gcgactatct cgccatcagc tttgtgaaat ccgccgaaga
     1261 tttgcacatc gcgcgcgcca aagtcgaaga agaaatgaaa ggcagcacgg ccgtgcgccc
     1321 cggtttggtt tccaaaatcg aacgcgtaga agcgattgaa aaccttgatg aaatcatcct
     1381 cgccggcgac ggcattatgg ttgcacgcgg cgacttggcg gtcgaagtcg gacacgccgc
     1441 cgtccccgcc ctgcaaaaac ggatgatccg ccgcgcccgc gagttgcgcc gcttcagcat
     1501 tacggcgacg caaatgatgg aatcgatgat taccaacccc gtgccgaccc gcgcggaagt
     1561 cagcgatgtg gcaaacgcgg tattggacgg caccgatgcg gtgatgtgtt ccgccgaaac
     1621 cgccgtcggc gcgtatccgt ttgaaaccgt cagccaaatg gcgattatct gcgcggctgc
     1681 ggaaaaagag caggattcgc tcaacggcgt tgccgaacag gtcgagtatc ccgaagcggt
     1741 cagcaccaac ctggcggttg ccggcggtgc ggtcagcgtg gcgcgcgcgg ttcacgccaa
     1801 agccatcgtc gccctgaccg aaagcggttc gaccgccttt gaaatcagcc gccacaacat
     1861 caccctgccg attttcgcgc tgaccccgag cgtttccgcc caacgccgta tggcgatgta
     1921 ccggggcgtg cgcccgctga ttttggcaac cagcaccgac cacgacacgg cgttaaacga
     1981 agtcgaaacc atgctggtgg aacacaacat cctgcattcc ggcgaccaat acatcattac
     2041 cagcggctcg caaatgcgcg aatccggttc gaccaatacg ctggaagtgc tgcgcgtcaa
     2101 ataatccgcc ctgagtggaa aatgccgtct gaagtcgatg cccgaggctt cagacggcat
     2161 tttttgcagc ggcgcggcgg ttcgggcaaa ctctgaaaaa attgtgcaaa tccggcaaca
     2221 tcggataaaa tcgagtacct atactaaagc gaaacaaggc atttccgact gcctttttta
     2281 tagtggatta aatttaaacc agtacggcgt tgccttgccg tactatctgt actgtctgcg
     2341 gcttcgtcgc cttgtcctga tttttgttaa tccactatat ttatccaccg tccgcctttt
     2401 tacggaaacc gaaatgaccc cttccgcact gaaaaaaacc gtcctgctgc tcggcactgc
     2461 ctttgccgcc gcatccgcac aagcctccgg ctaccacttc ggcacacagt cggtcaacgc
     2521 gcaaagcacg gcaaatgccg ccgccgcaga agccgccgac gcatcgacca tcttctacaa
     2581 ccctgccggc ctgaccaaac tcgacagcag ccagatttcc gtcaacgcca acatcgtgct
     2641 gcccagcatt cattatgagg cggattccgc caccgacttt accgggcttc ccgtccaagg
     2701 ttcgaaaagc ggcaaaatca ccaaaaccac ggtcgcgccc cacatctacg gcgcatacaa
     2761 agtcaacgac aatctgaccg tgggcttggg cgtgtacgtc cccttcggtt ctgccaccga
     2821 atacgaaaaa gattccgtgt tgcgccacaa catcaacaaa ctcggtctga ccagcatcgc
     2881 cgtcgaacct gtcgccgcgt ggaaactcaa cgaccgccat tccttcggcg caggcatcat
     2941 cgcccaacat acttccgccg agctgcgcaa atatgccgac tgggggatta tggaaaaagc
     3001 gaaagcacta aaagaaacac cccccaatcc aactaaagcc gcccaaatca aagccgacgg
     3061 acacgccgat gtcaaaggca gcgattgggg cttcggctac caactggcgt ggatgtggga
     3121 catcaacgac cgtgcgcgcg tgggcgtgaa ctaccgttcc aaagtctcgc acacgctcaa
     3181 aggcgatgcc gaatgggcgg cagacggcgc ggcggcgaaa gcaatgtgga gtacgatgct
     3241 tgcagcaaac ggctacacgg cgaatgaaaa agcccgcgtt aaaatcgtta cgcctgagtc
     3301 tttgtccgta cacggtatgt acaaagtgtc cgataaagcc gacctgttcg gcgacgtaac
     3361 ttggacgcgc cacagccgct tcgataaggc ggaactggtt tttgaaaaag aaaaaaccgt
     3421 cgtcaaaggc aaatccgacc gcaccaccat cacccccaac tggcgcaaca cctacaaagt
     3481 cggcttcggc ggttcttatc aaatcagcga accgctgcaa ctgcgcgccg gcatcgcttt
     3541 tgacaaatcg cccgtccgca acgccgacta ccgcatgaac agcctgcccg acggcaaccg
     3601 catctggttc tccgccggta tgaaatacca tatcggtaaa aaccacgtcg tcgatgccgc
     3661 ctacacccac atccacatca acgacaccac ctaccgcacg gcgaaggcaa gcggcaacga
     3721 tgtggacagc aaaggcgcgt cttccgcacg tttcaaaaac cacgccgaca tcatcggcct
     3781 gcaatacacc tacaaattca aataaacggc ccgccgtttg aatgtaacaa tgccgtctga
     3841 aacagatttc cgtttcagac ggcattgttt taggcgcgat ttatagtgga ttaacaaaaa
     3901 tcag
//
LOCUS       DAWGNT010000167         3881 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.167, whole genome shotgun sequence.
ACCESSION   DAWGNT010000167 DAWGNT010000000
VERSION     DAWGNT010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3881
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.167"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(85..1446)
                     /gene="accC"
                     /locus_tag="WHR98_001754"
     CDS             complement(85..1446)
                     /gene="accC"
                     /locus_tag="WHR98_001754"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEZ2308396.1"
                     /translation="MLKKVLIANRGEIALRVLRACREMGIATVAVHSEADKDSLHVKL
                     ADESVCIGPAASAQSYLNVPAIIAAAEVSCADAVHPGYGFLAENADFAEQVEQSGFTF
                     IGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGSDGALPDDGEEILKIADKVGYPVIIKA
                     SGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVIADE
                     HGNAIYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIGYRGAGTFE
                     FLYEDGEFFFIEMNTRVQVEHPVTELITGVDIVQEQLRIAAGLPLQYKQKDIQVEGHA
                     FECRINAEDPYNFIPSPGPIESCHLPGGFGIRVDSHIYQGYRIPPYYDSLIGKICVVG
                     KDRDQAMAKMRVALAELAITGIKTNTPLHRDLFNDPGFQKGGVSIHYLEHWLEDRKAK
                     QDK"
     gene            complement(1559..2014)
                     /locus_tag="WHR98_001755"
     CDS             complement(1559..2014)
                     /locus_tag="WHR98_001755"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEZ2308397.1"
                     /translation="MDLRKLKKLIDLVEESGIAEIEVTEGEEKVRITRTIAAAPVYAA
                     PVPAAAPAVTPAAAPVAASAPAAAPAARDLSDAQKSPMVGTFYRAPGPNAAPFVEVGQ
                     QVKAGDTLCIIEAMKLMNEIEAEKSGTVKEILVENGTPVEFGEPLFIIG"
     gene            complement(1996..2253)
                     /locus_tag="WHR98_001756"
     CDS             complement(1996..2253)
                     /locus_tag="WHR98_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase"
                     /protein_id="HEZ2308398.1"
                     /translation="MRKIKLPAHFPQKPPFFDILLDIYRQLRENKHILTVVFHHRKTV
                     SEHHSARFAPLPQAGCFLKNQRNNPPEHRQPLKEQKWICAN"
     gene            2370..3410
                     /gene="queA"
                     /locus_tag="WHR98_001757"
     CDS             2370..3410
                     /gene="queA"
                     /locus_tag="WHR98_001757"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEZ2308399.1"
                     /translation="MDISDFDFTLPEKLIAQHPPEVRGSSRLLVALPDMPMQDRVFGD
                     LPDYVEAGDVLVFNNTKVMKARLFGQKDSGGRIEALIERVLDSHTALAHIRSSKSPKP
                     GMGLVFEGGIRAVMVGREGELFCLRFEGGQTVYELLEQNGHLPLPPYIERAADADDDS
                     RYQTVYAKYQGAVAAPTAGLHFTEELLRRLKDKGAVTAEVTLHVGAGTFQPVRVEKIE
                     EHKMHSEWFEVPSETVAAVEAAKARGNKVWAVGTTSMRALESAARATGRLKAGQGDTD
                     IFITPGYRFNVADRLVTNFHLPKSTLLMLVSAFSGMGHIRAAYRYAVEREYRFFSYGD
                     AMVLGRNEGVVR"
BASE COUNT          833 a          934 c         1176 g          938 t
ORIGIN      
        1 cgaaatcggt ttcagacggc gcggggcaag ggaaatgccg tctgaaaacg gacaaactgt
       61 ttcagacggc atatcgggga cggcttattt gtcctgtttg gctttgcgat cttccagcca
      121 gtgttccaaa tagtggatgc tgacgccgcc tttttggaaa cctgggtcgt tgaacaagtc
      181 gcggtgcagc ggcgtattgg ttttgatgcc ggtaatcgcc agttcggcaa gggctacgcg
      241 cattttagcc atggcttggt cgcggtcttt accgacgacg cagattttgc cgatcaggct
      301 gtcgtagtac ggtgggatgc ggtagccttg gtaaatgtgg ctgtccacgc ggataccgaa
      361 gccgccgggc aggtggcagc tttcaatcgg gcccgggctg gggatgaagt tgtacgggtc
      421 ttcggcgttg atacggcact caaacgcgtg gccttcgact tgaatatcct tttgtttgta
      481 ttgcaaaggc aggccggcgg cgatgcggag ttgctcctgc acgatgtcca cgccggtgat
      541 gagctcggta accggatgct cgacctgaac gcgcgtgttc atctcgataa agaaaaattc
      601 gccgtcttcg tataaaaact caaacgtacc cgcgccccgg tagccgatgc gtttgcaggc
      661 atcggcacag gcgttgccga ttttggcgcg ttctttttca gtgatgaacg gagccggtgc
      721 ttcctcgatg actttttggt ggcggcgttg cagcgaacag tcgcgctcgg caaggtagat
      781 ggcgttgccg tgttcgtcgg caatcacttg gatttcgacg tggcgcggac gttgcagata
      841 gcgttccatg taaaccatcg ggttgccgaa tgccgcgcct gcttcggctt tggtcatttc
      901 gacagattgg aggaggtctt cttttttctc gaccacgcgc ataccgcggc cgccgccgcc
      961 gccagaggct ttgataatga cgggataacc gactttatcg gcgattttga ggatttcttc
     1021 gccgtcgtcg ggcaatgcgc cgtcagaacc ggggacgcag ggtacgcctg ccgctatcat
     1081 cgcgtgtttg gcggagactt tgtcgcccat caggcggatg gtgtcgggtt tcgggccgat
     1141 aaaggtaaag ccggactgct cgacctgttc ggcgaaatcg gcgttttcgg caaggaaacc
     1201 gtagcccggg tggacagcgt ccgcgcagct tacttcggcg gcggcgataa tggcggggac
     1261 gttaaggtag ctttgcgcgg aagcggcagg gccgatgcac acggattcgt cggcgagttt
     1321 gacgtgcagg ctgtctttgt cggcctcgga atgcacggcg acggtggcaa tgcccatttc
     1381 gcggcaggca cggagtacgc gtaatgcgat ttcgcctcgg ttggcgatta aaactttttt
     1441 cagcatgatg actgttcctg tgattccggc aacccgtccg taaaaaaaag gtgcgggaac
     1501 gccgaagggg gaaagcattt cagacggcat cggaagttta tgccgtctga aaacaggatt
     1561 atccgataat gaagagcggt tcgccgaatt cgacgggcgt accgttttcg accaaaattt
     1621 ctttgaccgt gccggatttt tcggcttcga tttcgttcat cagcttcatc gcttcgatga
     1681 tgcacagcgt gtcgccggct ttaacctgtt gaccgacttc gacaaaaggc gcagcattcg
     1741 ggccgggcgc gcggtagaac gtgccgacca taggtgattt ttgcgcgtcg gacaaatcgc
     1801 gggcggcagg tgcggcggcg ggcgcggatg ccgcaacggg tgcggcggca ggcgttacgg
     1861 ccggcgcggc ggcaggtacg ggcgcggcgt aaacgggtgc ggcggcgatg gttcgggtga
     1921 tgcggacttt ttcctcgcct tcggttactt cgatttcggc gatacccgat tcttcaacca
     1981 aatcaatcag tttttttaat ttgcgcaaat ccatttctgt tcctttaaag gctgccggtg
     2041 ttccggcggg ttgttgcgtt ggtttttcag aaaacagccg gcttgcggca acggcgcaaa
     2101 ccgggcggaa tggtgttcgg atacggtttt cctgtggtgg aaaacaaccg tgagaatgtg
     2161 tttattttcc cgaagttgtc ggtaaatgtc cagtaaaata tcaaaaaacg gcggtttttg
     2221 ggggaaatgt gcaggaagtt tgattttgcg cacaagatgc cccgggtcaa gagtgtttat
     2281 tctaatctgt tggtttttcg gacaaagatg ccgtctgaaa aagggctaaa gtgcgtataa
     2341 tggcggcttg cccgaacgag agtgtaaaaa tggatatttc agattttgat tttaccctgc
     2401 ccgaaaagct gattgcccag catccgcccg aagtgcgcgg cagcagccgc cttttggttg
     2461 cgctgccgga tatgcccatg caagaccggg tattcggcga tttgcccgat tatgtcgagg
     2521 caggcgacgt tttggtgttc aacaacacca aggtaatgaa ggcgcggctg tttggtcaaa
     2581 aagacagcgg cggcaggatc gaagccctga tcgagcgtgt tttagacagt cataccgcac
     2641 tggcgcacat ccgttcgtcc aaatcgccca agcccggtat ggggctggtg tttgaaggcg
     2701 gcatccgtgc cgtgatggtc gggcgtgagg gcgaactgtt ctgcctgcgt tttgaaggcg
     2761 gtcaaaccgt ttacgaactt ttggaacaga acggccattt gcctctgccg ccttatatcg
     2821 aacgtgccgc cgatgcggat gacgacagcc gttatcaaac cgtttatgcc aaatatcagg
     2881 gtgcggtcgc cgcgccgacg gcgggtctgc attttacgga agaacttttg cgccgcctga
     2941 aagacaaagg cgcagtaacc gcagaagtaa ccctgcacgt cggtgcgggg acattccaac
     3001 ccgtgcgtgt ggaaaaaatc gaagaacaca aaatgcacag cgaatggttt gaagtgccgt
     3061 ctgaaaccgt cgccgccgtt gaggcggcaa aagcccgggg gaacaaagtc tgggcggtcg
     3121 gcacgacttc tatgcgcgcc ctcgagtctg ccgcgcgtgc gacgggtcgt ctgaaagcgg
     3181 ggcagggcga caccgatatt ttcatcacgc cgggctaccg ttttaatgtt gccgacaggc
     3241 tggttaccaa tttccatctg ccgaaatcga cgctgctgat gcttgtcagc gcgttttcgg
     3301 gtatgggtca tatccgcgcc gcgtatcgtt atgcggtcga acgcgaatac cgtttcttca
     3361 gctacggcga tgcgatggtt ttggggcgga acgaaggggt ggtacgttag aacagcccca
     3421 agtctattgg gggaagacaa gtgccgtctg aacggacgtt cggacggcat tcttttgttg
     3481 atttgaatga aaggaactgt atgacatata gtggattaaa tttaaatcag gacaaggcaa
     3541 cgaagccgta gacagtacaa atagtacggc aaggcgaggc aacgctgtac tggtttttgt
     3601 taatccacta tagattcagg cgcgagaggc gagaaactca gtcattgttg atgacgcgca
     3661 atacgttaaa attcattccg ttttggtcgt ataaacatat tacatacgcc attttttgta
     3721 ttcaaggctg cctgaaaaca gtgggcaaga atatctaacc caacgaaaag ctgaaaaagc
     3781 aacaaaaaat aatctgcacc ttagtcggtt ggttagtcca accttagggg tgcagaccat
     3841 tcaatctttc aggctgcctt tgtttgttta taagataaat t
//
LOCUS       DAWGNT010000168         3846 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.168, whole genome shotgun sequence.
ACCESSION   DAWGNT010000168 DAWGNT010000000
VERSION     DAWGNT010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3846
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.168"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(64..1122)
                     /gene="dinB"
                     /locus_tag="WHR98_001758"
     CDS             complement(64..1122)
                     /gene="dinB"
                     /locus_tag="WHR98_001758"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEZ2308400.1"
                     /translation="MSSRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICA
                     ASYEARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLS
                     LDEAYLDVTRNFKNIPYASEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPN
                     GQFVLPPYKVMAFLETLPLGKIPGVGKVTLKKMQSLGMQTAGDLRRFDRGELLNHFGR
                     YGYRLYDLARGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITR
                     KNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVPPQTEDAFRLI
                     GIGVGHLVPKNQQQDLWA"
     gene            1356..2135
                     /locus_tag="WHR98_001759"
     CDS             1356..2135
                     /locus_tag="WHR98_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HEZ2308401.1"
                     /translation="MAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSR
                     LGFYEGEGFIWRAYSIVSAEYADTLEYFAVLIQDGPMSARFAQMQQGDTILLDKNATG
                     FLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDR
                     LAALSEHPLVGEYGHSLRFVPVTTRAANPSGLSGKRIPELLKNSSIEQALHTKFTPES
                     TRFMICGNPEMVKDTFQTLLDMGYAMHRNRIPGQIMMENGF"
     gene            complement(2346..3758)
                     /locus_tag="WHR98_001760"
     CDS             complement(2346..3758)
                     /locus_tag="WHR98_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEZ2308402.1"
                     /translation="MLFEFKENKMIVASRWPLLEKVFLRFGMPVAVVDLESTGGNLYE
                     DRVTEVALVKFEQGRVVRHEWLVNPQKPIPQFVAGLTGISDGMVADAPVFAEIAGELF
                     SVLKGCVLVAHNSRFDYTFLKHEFHRVGIGFSSPALCSVQLSRCLYPQFYKHSLDSII
                     ERLGIVVEDRHRAMADVSALCDYLEYSLSEHGVEAWIRQCFRLMNPKPLPAALPERLR
                     EQLYGLPDGMGVLACFDGGGKVNYIGTFERVYSEVSALLDSGKAPFDWCNTEEVRFFP
                     ALGSLHAYKIKAELVGRYHSGCYVSAKNLLKTFTTVRFEKGSDGMLNAKTAALKNGVT
                     DNPPTGLFANKKAARRALSSWAETYGLCPASAGILPDGYAEDEPCPVYVSGRCDKACG
                     RSDEQVLAFAHKLPILDWGKMHEVEITETDPLTGEKVVLHGMGGALEMGDGLWYFDKD
                     LPDAFKAKFKTDRKNIKEIG"
BASE COUNT          999 a         1141 c          845 g          861 t
ORIGIN      
        1 gcagccatgc cgtctgaaag ccgttcagac ggcatgtttt ttggacggcg tgcgtaaagc
       61 ggtttacgcc cacaaatcct gctgctggtt tttcggcaca agatgcccca cgccgatacc
      121 gataaggcgg aacgcgtctt ccgtctgcgg cgggacgcgc gccatcaaca tttgcgcagc
      181 ctgcagcaga gctgcgcagt cgggcaatac ggaggaataa gtcagtgtgc gcgtgatgat
      241 gcggaaatcg taggtcttca gcttgagcgt tacgctttgg gcttcgacgt ttttgcgcgt
      301 gatttgccgc cacaggtctt cagcaagatg gggcaggtgt ccggcagcct gctcgagcgg
      361 caggtcttca ggcagggtga tttctgtgga gatttggagg cgttcgcgtt cggctttgac
      421 ggggcgttca tccgtaccgc gcgccaaatc atagaggcgg tagccgtagc gtccaaaatg
      481 gtttaagagc tcgccgcgat cgaaacggcg caagtcgccc gccgtctgca tacccagcga
      541 ctgcattttt ttcagcgtta ccttgcccac gccggggatt ttgcccaaag gcagggtttc
      601 caaaaatgcc atgactttgt acggcggcaa cacaaactgc ccgttcggct tgcgccagtc
      661 cgacgcgatt ttcgccagaa atttgttcgg cgcgatgcct gcggatgcag tcaaacctgt
      721 ttccgcaaaa atggcggcac ggatttcttt ggcaacttca ctggcgtaag ggatgttttt
      781 gaaattacgg gtaacgtcaa gataggcttc gtccagcgac aagggttcga ttaaatcggt
      841 ataacgcctg aatacggcgt gaatctgcgc ggaaacctga cggtacaaat cgaaatgcgg
      901 cggcacatac accgcttgcg gacacagcct tttcgccgtt gccaccgaca tcgcggaatg
      961 cagcccgaac tgccgtgcct catacgatgc ggcgcaaatc accgaacgcg cgccctccca
     1021 cgcgacgacc accggccgcc ctttcaaatg cggctgttcg cgcagttcta ccgatgcgta
     1081 gaacgcgtcc atgtcgatgt ggatgatttt gcgtgaagac atcggctctg ctgaggataa
     1141 aagggatatt ctactgccgg catcgggcaa attccaaata tacgccccga tatgggaagc
     1201 cccgcatccg cagcgttgga aacaggcaaa cgcctgcaaa caaagccggc aaacggataa
     1261 cggcatattg cctgattgtc attcagacat aggaaatgcg gaaaaaaaca cccaaattgg
     1321 ctataatccc gacaaacaca ctcaaggaca acaacatggc agcctcgccc gaagcaaaat
     1381 tcactgaaga aaagattttg tgggtcaaac accacacgcc gaaactcatc actttcgcca
     1441 tcagccgtcc cgaatcctac cgttttaaag ccggacagtt ctcccgactc ggtttctacg
     1501 aaggggaagg ctttatttgg cgtgcctact ccatcgtttc cgcagaatat gccgacacgc
     1561 tcgaatattt tgccgtactc atccaagacg gccccatgtc ggcccgtttc gcacaaatgc
     1621 aacagggcga caccatcctg ctcgataaaa atgccaccgg cttcctcctg cccgaacgct
     1681 tccccgacgg caaggatttg gtaatgctct gcaccggctc cggcatcgcc cccttccttt
     1741 ccattctcga acaacccgaa atccggcagc gtttcgatac cgtcaacctg atacattccg
     1801 tatcttttcc cgaagaattg attttcaacg accggctcgc cgcattgtcc gaacatcccc
     1861 tggtaggtga atacggacac tcgctccgtt tcgtccctgt taccacccgt gccgccaacc
     1921 cctcgggctt aagcggaaaa cgcattccgg aactcttaaa aaacagcagc atcgaacagg
     1981 cgctgcatac caagttcacc ccggaatcca cacggtttat gatttgcggc aacccggaaa
     2041 tggtcaaaga tactttccaa acgctgcttg acatgggtta cgccatgcac cgcaaccgca
     2101 ttcccggtca aatcatgatg gaaaacggct tctaaaaacc accctgcttg tccgatgcct
     2161 tcggatggac ggtcaaaccg acacggcacg aaaaccgcgt cggcaaaaat gccgtctgaa
     2221 aaaattcaga cggcatcttc ggacacatta cctgcaaacg gcaacacatt ccaacccaaa
     2281 ccgattaggc aatcaatacg aacggctgtt tacatactta ccggctttca tcaaccggta
     2341 tcgatttaac cgatttcctt aatatttttc ctgtccgttt taaacttcgc cttaaacgca
     2401 tccggtaaat ctttatcgaa ataccaaagc ccgtcaccca tttccaatgc gccgcccatt
     2461 ccatgcagaa caactttttc ccccgttaaa ggatcagttt cggtaatttc tacctcatgc
     2521 atttttcccc aatccaaaat aggcaacttg tgtgcaaacg ccaaaacctg ttcgtcagaa
     2581 cggccgcacg ccttatcgca tcggcctgaa acatatacgg gacaaggctc atcctctgca
     2641 taaccgtccg gaaggatacc ggctgaggca ggacacaatc cgtatgtttc cgcccacgac
     2701 gacaaagccc gtctcgccgc ctttttattg gcaaataatc cggtaggcgg attatccgtc
     2761 acaccgtttt tcaaagccgc tgttttcgca ttcaacatgc cgtctgaacc tttttcaaac
     2821 ctgacggtcg taaatgtttt aagcagattt ttggcagata cataacaacc cgaatgataa
     2881 cgtccgacca attccgcttt aatcttatat gcatgcaggc tgcccaatgc aggaaaaaaa
     2941 cggacttcct ccgtattgca ccaatcaaac ggggcttttc cggaatccaa taaagccgaa
     3001 acctcgctat atacccgttc aaacgtaccg atgtaattta cttttcctcc gccgtcgaaa
     3061 caggccagca cccccatacc gtcaggcaaa ccgtacaact gttccctcaa ccgttcgggc
     3121 agcgcggcag gcaacggttt cggattcatc aaacggaaac actgcctgat ccatgcctcg
     3181 accccgtgtt ccgacagact gtattccaaa taatcgcaca atgccgatac atccgccatc
     3241 gcacgatgcc tgtcttccac aacaatcccc aacctttcga tgatactgtc caggctgtgc
     3301 ttgtaaaatt gcggatacag acaccgggac agctgcacac tgcacaaagc aggcgatgaa
     3361 aatccgatac ccacacgatg aaactcatgc tttaaaaacg tatagtcgaa acggctgtta
     3421 tgtgcaacca gcacacaacc cttcaatacc gaaaacaact cgccggcaat ctctgcaaaa
     3481 acaggcgcat cggcaaccat gccgtctgaa atccccgtca gccccgccac aaactgcgga
     3541 atcggttttt gaggattaac caaccactca tgcctcacca cccttccctg ctcaaacttg
     3601 accaaagcca cttcggttac cctgtcttca tacagattgc cgcccgtcga ttccaaatcg
     3661 accacggcaa caggcattcc aaaccgtaaa aatacctttt ccagcaaggg ccagcgggaa
     3721 gcaacaatca ttttattctc tttaaattca aacaacaaac cgatatttta cacttttaag
     3781 gcatttcatc caacaaaaca attgacagaa tccgatgatt accctaaaat tcaaatcttt
     3841 cttgca
//
LOCUS       DAWGNT010000169         3844 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.169, whole genome shotgun sequence.
ACCESSION   DAWGNT010000169 DAWGNT010000000
VERSION     DAWGNT010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3844
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.169"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            155..1672
                     /locus_tag="WHR98_001761"
     CDS             155..1672
                     /locus_tag="WHR98_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HEZ2308403.1"
                     /translation="MLYFRYGFLVVWCAAGVSAAYGADAPAILDDKALLQVQRSVSDK
                     WAESDWKVENDAPRVVDGDFLLAHPKMLEHSLRDALNGNQADLIASLADLYAKLPDYD
                     AVLYGRARALLAKLAGRPAEAVARYRELHGENAADERILLDLAAAEFDDFRLKSAERH
                     FAEAAKLDLPAPVLENVGRFRKKTEGLTGWRFSGGISPAVNRNANNAAPQYCRQNGGR
                     QICSVSRAERAAGLNYEIEAEKLTALADNHYLLFRSNIGGTSYYFSKKSAYDDGFGRA
                     YLGWQYKNARQTAGILPFYQVQLSGSDGFDAKTKRVNNRRLPPYMLAHGVGVQLSHTY
                     RPNPGWQFSVALEHYRQRYREQDRSEYNNGRQDGFYVSSAKRLGESATVFGGWQFVRF
                     VPKRETVGGAVNNAAYRRNGVYAGWAQEWRQLGGLNSRVSASYARRNYKGIAAFSTEA
                     QRNREWNVSLALSHDKLSYKGIVPALNYRFGRTESNVPYAKRRNSEVFVSADWRF"
     gene            complement(1730..3610)
                     /locus_tag="WHR98_001762"
     CDS             complement(1730..3610)
                     /locus_tag="WHR98_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional anthranilate synthase component I
                     family protein/aminotransferase class IV"
                     /protein_id="HEZ2308404.1"
                     /translation="MPYFALFDDAVSGRAKRYQNHVESRFFRPEELDALDGALQSGWQ
                     KGLHAVLFADYGFGLPLTGVESERGGNLALHWFADCADTDAENWLARHSDGLPAGIST
                     PQSSVSEADYLDHIRQIHEAIRRGDTYQINYTTRLHLQAYGNPVSLYRRLRQPVPYAV
                     LSHLPDAEGQSAWTLCFSPELFLNIASDGTISTEPMKGTAPILGDGQDERRAAELQAD
                     PKNRAENVMIVDLLRNDLGKIAQTGKVCVPEPFKVSRFGSVWQMTSTIQAQALPHTSF
                     ADILRAAFPCGSITGAPKKMSMQIIESLETEARGLYTGSIGYLNPCSGGLGFEGTFNV
                     VIRTLSLKPVSASDGIVSGIGGPDSNAQARTAGQGGATPHPFDSNPPYQGVYGVGSGI
                     VIDSDPAAEYRECGWKARFLNELRPDFGIFETLRAENGRCTLLDRHLCRLKTSAQALN
                     LPLPDGCENQIKQYIADLPDGAFRIKALLASDGISLSRAVLNHLADKQRVIISPAVLP
                     AQNYLRRFKTTCRALFDQAWQTAETQGAFDSLFFNSDGILLEGGRSNVFIKHRGQWLT
                     PSLDLDILNGIMRQAVLDEPQKYLQTNQVIETHITQKTLQEAEEIRLSNALRGVFAAA
                     LA"
BASE COUNT          795 a          866 c         1281 g          902 t
ORIGIN      
        1 tataaatgtg aaatccgccc tttgaaaatc gggcggcggt tttttgcctg cccgctttca
       61 gacggcaaag ccggttttca cgggtttctg cctgtttttc ggatggtttg acgtgcttcg
      121 gcggcgtgtt tgccggaaag gtaaatgaca gggtatgttg tatttcagat acggcttttt
      181 ggttgtttgg tgtgcggcag gtgtttctgc cgcctatggg gcggatgcgc ccgcgatttt
      241 ggatgacaag gcattgttgc aggtgcagcg gtcggtgtcg gataagtggg cggaatcgga
      301 ttggaaagtt gaaaatgatg ccccgcgcgt ggttgacggg gattttttgt tggcgcatcc
      361 gaaaatgttg gaacatagtt tgcgcgacgc gctcaacggc aatcaggcgg atttgatcgc
      421 ttcgttggcg gatttgtatg ccaagctgcc ggattatgac gcggttttgt acggcagggc
      481 gcgggctttg ctggcgaaat tagcgggaag gccggcggag gcggtggcgc ggtatcggga
      541 actgcacggg gaaaatgcgg cagacgagcg gattttgctg gatttggcgg cggcggagtt
      601 tgacgatttc cgactgaagt cggcagaaag gcattttgcg gaggcggcaa aattggattt
      661 gccggcgccg gttttggaaa atgtggggcg ttttcggaaa aaaacggagg ggctgacggg
      721 ctggcgtttt tcgggcggca tcagcccggc ggtcaataga aatgccaata atgccgcgcc
      781 gcagtattgc cggcaaaacg gaggccggca gatatgcagt gtcagccggg cggagcgggc
      841 ggcagggttg aattatgaaa tcgaggcgga aaaactgacg gcgttggcag ataatcatta
      901 tttgttgttc cgttccaata tcggcggcac gagctattat ttcagtaaaa aatcagctta
      961 tgatgacggg ttcggcaggg cgtatttggg ttggcagtat aaaaatgcgc ggcagacggc
     1021 ggggattttg ccgttttatc aggtgcagtt gtcgggcagc gacggctttg atgcgaaaac
     1081 aaaacgggta aacaaccgcc gcctgccgcc gtatatgctg gcgcacggag tcggcgtgca
     1141 gctgtcccat acttaccgcc caaacccggg atggcaattt tcggtcgcgc tggaacatta
     1201 ccgccaacgc taccgcgaac aggataggtc ggaatacaat aacggcaggc aggacgggtt
     1261 ttatgtttcg tcggcaaaac gtttgggcga atcggcaact gtgttcggcg gctggcagtt
     1321 tgtgcggttt gtgccgaaac gcgaaacggt gggcggcgcg gtcaataatg ccgcctaccg
     1381 gcgcaacggt gtttatgccg gctgggcgca ggagtggcgg cagttgggcg gtttgaacag
     1441 tcgggtttcc gcgtcttatg cccgccgcaa ctataagggc attgcggctt tctcgacaga
     1501 ggcgcaacgc aaccgcgaat ggaatgtctc gctggctttg agccacgaca agttgtcgta
     1561 caaaggtatc gtgccggcgt tgaattatcg tttcggcagg acggaaagta atgtgccgta
     1621 tgcgaaacgc cgcaacagcg aggtgtttgt gtcggcggat tggcggtttt gaatggtggg
     1681 ataatgccgt ccgaactttg gaaacaggtt cggacggcat tttgcgcgtt caggcaaggg
     1741 cggcggcaaa tacgccgcgc aaggcgttgg agaggcggat ttcttcggct tcttgcagtg
     1801 ttttttgtgt gatgtgtgtt tcgattactt gatttgtttg caaatatttt tgcggttcgt
     1861 ccaacacggc ttggcgcatt atgccgttta aaatgtctaa atctaaagag ggcgtaagcc
     1921 attgtccgcg atgtttgatg aacacgttgc ttctgccgcc ttcaagcagg atgccgtctg
     1981 aattgaaaaa caggctgtcg aacgcgcctt gtgtttcggc ggtttgccac gcttggtcga
     2041 agagggcgcg gcaggtggtt ttgaagcggc gcaggtagtt ttgtgcgggc aggacggcgg
     2101 gcgaaatgat gacgcgttgt ttgtcagcca aatggtttaa aacggcgcgg gacaggctga
     2161 tgccgtctga agcgagcagg gctttgatgc ggaacgcgcc gtcgggcaag tcggcaatgt
     2221 attgtttgat ttgattttcg caaccgtcgg gcaggggcag gttgagggct tgcgcggagg
     2281 ttttcagacg gcataggtgg cggtcgagca gggtgcagcg tccgttttcc gcgcgcaggg
     2341 tttcaaaaat gccgaagtcg gggcgcaatt cgttgaggaa acgggctttc cagccgcatt
     2401 cccgatattc ggcggcgggg tcgctgtcga tgacgatgcc ggaaccgaca ccgtacacgc
     2461 cttgatacgg cggattggag tcaaacggat gcggcgttgc cccgccttgc cctgccgttc
     2521 gggcttgcgc gtttgaatcc gggccgccga tgcctgaaac aatgccgtct gaagccgaaa
     2581 cgggtttgag cgataaggtg cggataacga cgttgaacgt gccttcaaac cccaagccgc
     2641 cggaacacgg gttcaaatag ccgatgctgc ccgtataaag tccgcgtgct tcggtttcga
     2701 gcgattcgat aatctgcata ctcatttttt tgggcgcgcc ggtgatgctg ccgcagggga
     2761 aggcggcgcg gaggatgtcg gcgaacgagg tgtgcggcag ggcttgggct tggatggtgc
     2821 tggtcatctg ccaaacgctg ccgaaacgtg atactttaaa cggctcgggc acgcatactt
     2881 tgccggtttg ggcgattttg ccgaggtcgt tgcgcagcaa atcgacaatc atcacgtttt
     2941 cggcgcggtt tttcgggtcg gcttgcaatt cggcggcgcg gcgttcgtct tgtccgtcgc
     3001 ccaaaatcgg cgcggtgcct ttcatcggtt cggtgctgat ggtgccgtct gaagcgatgt
     3061 tgaggaagag ttcgggcgag aaacaaagcg tccacgcgga ttgcccttcc gcatcgggca
     3121 ggtgggacaa aacggcatag gggacgggct ggcgcaggcg gcggtagagg ctgacgggat
     3181 tgccgtaggc ttgcaggtgc aggcgggtgg tgtagttgat ttgataggtg tcgccgcgcc
     3241 ggatggcttc gtggatttgg cggatatggt cgaggtaatc ggcttcggat acggaggatt
     3301 gcggcgtgga aatgccggcg gggaggccgt ctgaatgtcg ggcaagccag ttttcggcat
     3361 cggtgtcggc gcagtcggca aaccagtgca gggcaagatt gccgccgcgt tcggactcga
     3421 cccccgtcag cggcaaaccg aatccgtagt ctgcaaacaa cacggcatgc agcccttttt
     3481 gccagcccga ttgcagcgcg ccgtccaaag catcgagttc ttcgggacgg aaaaaacggc
     3541 tttccacatg attttgatag cgttttgcgc ggccgcttac ggcatcgtca aacagggcga
     3601 aataaggcat ggcaattcgg ggcaaatgtt ttgattatac gctcttttta cacatatttt
     3661 cagacgattc ggcaaatatc ggcaaaatgt aattttatgt agagaaagtg gggggcgaag
     3721 gtgtaaaatt gtgaaaacaa attccgattt ccaacctgaa atacaataag gagaccttta
     3781 tgacagacca ccagctgcaa ccgtttgaaa acgtagaatt aggcgaaaag caagatcagc
     3841 tcca
//
LOCUS       DAWGNT010000170         3788 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.170, whole genome shotgun sequence.
ACCESSION   DAWGNT010000170 DAWGNT010000000
VERSION     DAWGNT010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3788
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.170"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            346..669
                     /locus_tag="WHR98_001763"
     CDS             346..669
                     /locus_tag="WHR98_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HEZ2308405.1"
                     /translation="MRTTPTFPTKTFKPAAMALAVATTLSACLGGGTSAPDFNAGGTG
                     IGSNSRATTAKSAAVSYAGIKNEMCKDRSMLCAGRDDVAVTDRDAKINAPPPESAYRR
                     LYKPK"
     gene            683..3544
                     /locus_tag="WHR98_001764"
     CDS             683..3544
                     /locus_tag="WHR98_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEZ2308406.1"
                     /translation="MINLKPAIEAGYTGRGVEVGIVDTGESVGSISFPELYGRKEHGY
                     NENYKNYTAYMRKEAPEDGGGKDIEASFDDEAVIETEAKPTDIRHVKEIGHIDVVSHI
                     IGGRSVDGRPAGGIAPDATLHIMNTHDGTKNEIMSAAIRNAWVKLGERGVRIVNNSFG
                     TTSRAGTADHFQIANSEEQYRQALLAYSGGDKTDEGIRLMQQSDYGNLSYHIRNKNML
                     FIFSASNDAQAQPNTLTLLPFYEKDAQKGIITVAGVDRSGEKFNGSNHCGITAMWCLS
                     APYEASVRFTRTNPIQIAGTSFSAPIVTGTAALLLQKYPWMSNDNLRTTLLTTAQDIG
                     AVGVDSKFGWGLLDAGKAMNGPASFPFGDFTADTKGTSDIAYSFRNDISGTGGLIKKG
                     GSQLQLHGNNTYTGKTIIEGGSLVLYGNNKSDMRVETKGALIYNGAASGGSLNSDGIV
                     YLADTDRSGANETVHIKGDLQLGGEGTLYTRLGKLLKVDGTAMTGGKLYMSARGKGAG
                     YLNRTGQRVPFLSAAKIGRDYSFFTNIETDGGLLASLDSVEKTAGSEGDTLSYYVRRG
                     NAARTASAAAHSAPAGLKHAVEQGGSNLENLMVELDASESSATPETVETAAADRTDMP
                     GIRPYGATFRAAAAVQHANAADGVRIFNSLAATVYADSTAAHADMQGRRLKAVSDGLD
                     HNGTGLRVIAQTQQDGGTWEQGGVEGKMRGSTQTVGIAAKTGENTTAAATLGMGRSTW
                     SENSANAKTDSISLFAGIRHDAGDIGYLKGLFSYGRYKNSISRSTGADEHAEGSVNGT
                     LMQLGALGGVNVPFAATGDLTVEGGLRYDLLKQDAFAEKGSALGWSGNSLTEGTLVGL
                     AGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVA
                     GLGADVEFGNGWNGLARYSYAGSKQYGNHSGRVGVGYRF"
BASE COUNT         1025 a         1028 c         1005 g          730 t
ORIGIN      
        1 gaaccgattc acttgttaaa gaatcgttct ctttgagcta aggcgaggca acgccgtact
       61 ggtttttgtt catccactat aactagggaa attcaaatta agttagaatt atccctataa
      121 gaaaaagccg tctaagccgg tataaacaaa ataaactcat tgagctattt gtcgaaagtt
      181 caaatttcca ttttaaaaca attagtaaaa tcgagtttat cctagttgtc caagacaacc
      241 cctataataa tataattcaa aatataaaaa tgggttacat ctaaacatta cggaattttt
      301 attccctcgc ctgaattcta ttgtcagatt caaggagacc tcatcatgcg aacgacccca
      361 accttcccta caaaaacttt caaaccggct gccatggcgt tagctgttgc aacaacactt
      421 tctgcctgct taggcggcgg cacttctgcg cccgacttca atgcaggcgg caccggtatc
      481 ggcagcaaca gcagggcaac aacagcgaaa tcagcagcag tatcttacgc cggtatcaag
      541 aacgaaatgt gcaaagacag aagcatgctc tgtgccggtc gggatgacgt tgcggttaca
      601 gacagggatg ccaaaatcaa tgcccccccc cccgaatctg cataccggag actttacaaa
      661 cccaaatgac gcatacaaga atttgatcaa cctcaaacct gcaattgaag caggctatac
      721 aggacgcggg gtagaggtag gtatcgtcga cacaggcgaa tccgtcggca gcatatcctt
      781 tcccgaactg tatggcagaa aagaacacgg ctataacgaa aattacaaaa actatacggc
      841 gtatatgcgg aaggaagcgc ctgaagacgg aggcggtaaa gacattgaag cttctttcga
      901 cgatgaggcc gttatagaga ctgaagcaaa gccgacggat atccgccacg taaaagaaat
      961 cggacacatc gatgtggtct cccatattat tggcgggcgt tccgtggacg gcagacctgc
     1021 aggcggtatt gcgcccgatg cgacgctaca cataatgaat acgcatgatg gaaccaagaa
     1081 cgaaataatg tctgcagcca tccgcaatgc atgggtcaag ctgggcgaac gtggcgtgcg
     1141 catcgtcaat aacagttttg gaacaacatc gagggcaggc actgccgacc atttccaaat
     1201 agccaattcg gaggagcagt accgccaagc gttgctcgcc tattccggcg gtgataaaac
     1261 agacgagggt atccgcctga tgcaacagag cgattacggc aacttgtcct accacatccg
     1321 taataaaaac atgcttttca ttttttcggc aagcaatgac gcacaagctc agcccaacac
     1381 actgacccta ttgccatttt atgaaaaaga tgctcaaaaa ggcattatca cagtcgcagg
     1441 cgtagaccgc agtggagaaa agttcaatgg ctccaaccat tgcggaatta ctgccatgtg
     1501 gtgcctatcg gcaccctatg aagcaagcgt ccgtttcacc cgtacaaacc cgattcaaat
     1561 tgccggaaca tccttttccg cacccatcgt aaccggcacg gcggctctgc tgctgcagaa
     1621 atacccgtgg atgagcaacg acaacctgcg taccacgctg ctgacaacgg ctcaggacat
     1681 cggtgcagtc ggcgtggaca gcaagttcgg ctggggactg ctggatgcgg gtaaggccat
     1741 gaacggaccc gcgtcctttc cgttcggcga ctttaccgcc gatacgaaag gtacatccga
     1801 tattgcctac tccttccgta acgacatttc aggcacgggc ggcctgatca aaaaaggcgg
     1861 cagccaactg caactgcacg gcaacaacac ctatacgggc aaaaccatta tcgaaggcgg
     1921 ttcgctggtg ttgtacggca acaacaaatc ggatatgcgc gtcgaaacca aaggtgcgct
     1981 gatttataac ggggcggcat ccggcggtag cctgaacagc gacggcattg tctatctggc
     2041 agataccgac cgatccggcg caaacgaaac cgtgcacatc aaaggcgatc tgcagctggg
     2101 cggcgaaggt acgctgtaca cacgtttggg caaactgctg aaagtggacg gtacggcgat
     2161 gaccggcggc aagctgtaca tgtcggcacg cggcaaaggg gcaggctatc tcaaccgtac
     2221 cggacaacgt gttcccttcc tgagtgccgc caaaatcggg cgggattatt ctttcttcac
     2281 aaacatcgaa accgacggtg gtctgctggc ttccctcgac agcgtcgaaa aaacagcggg
     2341 cagtgaaggc gacacgctgt cctattatgt ccgtcgcggc aatgcggcac ggactgcttc
     2401 ggcagcggca cattccgcgc ccgccggtct gaaacacgcc gtagaacagg gcggcagcaa
     2461 tctggaaaac ctgatggtcg aactggatgc ctccgaatca tccgcaacac ccgagacggt
     2521 tgaaactgcg gccgccgacc gcacagatat gccgggcatc cgcccctacg gcgcaacttt
     2581 ccgcgcagcg gcagccgtac agcatgcgaa tgccgccgac ggtgtacgca tcttcaacag
     2641 tctcgccgct accgtctatg ccgacagtac cgccgcccat gccgatatgc agggacgccg
     2701 gctgaaagcc gtatcggacg ggttggacca caacggcacg ggtctgcgcg tcatcgcgca
     2761 aacccaacag gacggtggaa cgtgggaaca gggcggtgtt gaaggcaaaa tgcgcggcag
     2821 tacccaaacc gtcggcattg ccgcgaaaac cggcgaaaat acgacagcag ccgccacact
     2881 gggcatggga cgcagcacat ggagcgaaaa cagtgcaaat gcaaaaaccg acagcattag
     2941 tctgtttgca ggcatacggc acgatgcggg cgatatcggc tatctcaaag gcctgttctc
     3001 ctacggacgc tacaaaaaca gcatcagccg cagcaccggt gcggacgaac atgcggaagg
     3061 cagcgtcaac ggcacgctga tgcagctggg cgcactgggc ggtgtcaacg ttccgtttgc
     3121 cgcaacggga gatttgacgg tcgaaggcgg tctgcgctac gacctgctca aacaggatgc
     3181 attcgccgaa aaaggcagtg ctttgggctg gagcggcaac agcctcactg aaggcacact
     3241 ggtcggactc gcgggtctga agctgtcgca acccttgagc gataaagccg tcctgtttgc
     3301 aacggcgggc gtggaacgcg acctgaacgg acgcgactac acggtaacgg gcggctttac
     3361 cggcgcgact gcagcaaccg gcaagacggg ggcacgcaat atgccgcaca cccgcctggt
     3421 tgccggtctg ggcgcggatg tcgaattcgg caacggctgg aacggcttgg cacgttacag
     3481 ctacgccggt tccaaacagt acggcaacca cagcggacga gtcggcgtag gctaccggtt
     3541 ctgacggaca ggaagcagac agccgcaaag atcacggtct ttgcggctgt ttcttatgaa
     3601 aagaaaaccc tattccaatt gcctgcttct attgtttcaa gacttcttcc aaagattcgg
     3661 cattaatcag atgtatagcg gattaacaaa aatcaggaca aggcggcgaa gccgcagaca
     3721 gtacaaatag tacggaaccg attcactcgg tgcttgagca ccttagagaa tcgtttcttt
     3781 gagctaag
//
LOCUS       DAWGNT010000171         3784 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.171, whole genome shotgun sequence.
ACCESSION   DAWGNT010000171 DAWGNT010000000
VERSION     DAWGNT010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3784
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.171"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(226..549)
                     /locus_tag="WHR98_001765"
     CDS             complement(226..549)
                     /locus_tag="WHR98_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEZ2308407.1"
                     /translation="MDIVQLGPAELKAWMDEGRMFCLLDVRTDEETAVCSLPNALHIP
                     MNLIPLRQNELPDDVPLVVYCHHGIRSLHTAMYLADAGFENLYNLQGGIDAWAAEIDG
                     NMMRY"
     gene            complement(628..1284)
                     /locus_tag="WHR98_001766"
     CDS             complement(628..1284)
                     /locus_tag="WHR98_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HEZ2308408.1"
                     /translation="MDFEKARFNMVEQQIRPWDVLDFDVLDALAEIPRELFVDEDLQG
                     LAYADMALPLANGHKMLEPKVVARLAQGLKLTKNDTVLEIGTGSGYATALLAKLAGRV
                     ISDDIDAEQQNRAKAVLDGLGLDNIDYVQNNGLTELSAGAPFDAVYVGGAVNLVPEVL
                     KEQLKDGGRMVVIVGRKPVQRALLITRRGDVFEEKVLFDTLVAHLDDKDADPFGGFQF
                     "
     gene            complement(1386..1889)
                     /locus_tag="WHR98_001767"
     CDS             complement(1386..1889)
                     /locus_tag="WHR98_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEZ2308409.1"
                     /translation="MHALHFSASDKAALYREVLPQIESVVADETDWVANLANTAAVLK
                     EAFGWFWVGFYLVDTRSDELVLAPFQGPLACTRIPFGRGVCGQAWAKGGTVVVGDVNA
                     HPDHIACSSLSRSEIVVPLFSDGRCIGVLDADSEYLAQFDETDALYLGELAKILEKRF
                     EASRQAV"
     gene            2073..2846
                     /locus_tag="WHR98_001768"
     CDS             2073..2846
                     /locus_tag="WHR98_001768"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEZ2308410.1"
                     /translation="MYHQIGMWDQKWVIGNWKMNGRLQNNNSLMHRFRILPTAERVLI
                     GLAAPTVYLLQLHNAMQIVLNNRILTCAQDVSRFPDNGAYTGEVSAEMLADTGTDIVL
                     IGHSERSLYFGEKNEIQRRKMENVLNVGLIPLLCVGESLEEREAGKEHEVIAHQLSIL
                     QGLDTKNIAVAYEPVWAIGTGKVATVEQIADMHAFIYKEILSLCGSDVKIRVLYGGSV
                     KADNAADIFAVPYVDGALVGGASLSYDSFTAIISAAQNA"
     gene            2853..3203
                     /gene="secG"
                     /locus_tag="WHR98_001769"
     CDS             2853..3203
                     /gene="secG"
                     /locus_tag="WHR98_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEZ2308411.1"
                     /translation="MEAFKTLIWIVNIISALAVIVLVLLQHGKGADAGATFGSGSGSA
                     QGVFGSAGNANFLSRSTAVAATFFFATCMAMVYIHTHTTKHGLDFSNVQQTQQAPKPV
                     SNTEPSAPVPQQQK"
     gene            3217..3302
                     /locus_tag="WHR98_001770"
     tRNA            3217..3302
                     /locus_tag="WHR98_001770"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3251..3253,aa:Leu,seq:gag)
BASE COUNT         1038 a         1195 c          799 g          752 t
ORIGIN      
        1 gcctgcacat tgaaaatgcc gcccaagcaa actttcagtt tgccagcctc gtcctagccc
       61 tctcccacgg ggagagggga ttggggtgca ggctgccttt aaggttcagg caaattttaa
      121 cttcgttgat accgcgcttt agcttcgcag aagctgcact ttcagacgac cttttggaac
      181 accacaggta cacgcattta aggaatgccg tctgaaatgc ctgcctcaat aacgcatcat
      241 gttgccgtca atctcggccg cccatgcatc gatgccgccc tgaaggttgt acaggttttc
      301 aaaacccgcg tccgccaaat acatcgccgt atgcaggctg cggataccgt ggtggcaata
      361 caccacaagc ggcacatcat ccggcagctc gttctgccgc agcggaatca gattcatcgg
      421 gatatgcagc gcatttggca gcgaacaaac tgccgtttct tcatccgtac gcacgtccaa
      481 caaacaaaac atccgccctt cgtccatcca cgctttcaat tccgcgggcc caagttgcac
      541 aatatccatc gcacccccca aaaaaaacca agcaaaatgc cgtctgaagc cccaaacccg
      601 ctttcagacg gcatcgcaat ccgaacatca aaactgaaaa ccaccaaacg gatcggcatc
      661 cttatcatcc aaatgcgcca ccaaggtatc gaacagcacc ttctcttcaa acacatcgcc
      721 cctgcgcgta atcaaaagcg cgcgttgaac aggcttgcgt cctacgataa ccaccatgcg
      781 tccgccatct ttcaactgtt ctttcaacac ttcaggcaca aggtttaccg caccgccgac
      841 ataaaccgca tcaaacggcg cacctgcgga aagttcggtc aacccgttgt tttgcacata
      901 atcgatattg tccaaaccca agccgtccaa caccgctttg gcgcggtttt gctgttccgc
      961 atcgatatcg tccgaaatta ccctgcccgc caattttgcc aacagcgcgg tcgcatagcc
     1021 cgaacccgtg ccgatttcca aaaccgtatc gtttttcgtc agcttcaagc cctgcgccag
     1081 ccgcgccacg actttcggct ccagcatctt atgaccgttg gcaagcggca gcgccatatc
     1141 cgcatacgcc aaaccctgca aatcctcatc gacaaaaagc tcgcgcggaa tctccgccaa
     1201 agcgtccaaa acgtcaaaat ccaatacatc ccaaggacgg atttgctgtt cgaccatatt
     1261 gaaccgcgct ttttcaaaat ccatttagtg ctccgtcaaa taattgttcc aacaatagca
     1321 ggcattataa aaccacactc ccgccgcgcc aacttcggca cgcgccgccc gcccctttcc
     1381 ctcactcaaa ccgcctgacg cgaagcctca aaccgcttct ccaaaatctt cgccagctcg
     1441 cccaaataca aagcatctgt ctcatcaaac tgcgccaaat attcgctgtc cgcgtccaac
     1501 acgccgatac agcggccgtc tgaaaacagc ggcacgacaa tctccgaacg tgacaaagac
     1561 gaacaggcaa tatggtcggg atgcgcgttg acatccccga cgaccaccgt cccgcccttc
     1621 gcccaagcct gaccgcacac cccgcgaccg aacggaatcc gcgtacacgc caaaggcccc
     1681 tgaaacggtg ccaaaaccaa ttcgtccgaa cgcgtatcga ccaaataaaa acccacccaa
     1741 aaccaaccga acgcctcctt caaaaccgcc gccgtgttcg ccaaattcgc cacccaatcc
     1801 gtctcgtccg ccaccacaga ctcaatctgc ggcaacacct cccgataaag cgcggccttg
     1861 tccgaagccg aaaaatgaag cgcgtgcatc acatctccta tagttgcata catatcaggc
     1921 ggccattata aaacaacctg cccgaaacaa cattccaaac cgcccccgca gccgcccgcc
     1981 ccaagttgcg aacccgccgc atatccacta aacttcacat tgcaacgcgc cacacgcggc
     2041 agacagaaaa aacacgacac ggagcaaaaa agatgtatca ccaaatcgga atgtgggatc
     2101 aaaaatgggt catcggcaac tggaaaatga acggccggct ccagaacaac aattcgctca
     2161 tgcaccgctt ccgcatcctc cccaccgccg aacgcgtcct catcggactc gccgccccga
     2221 ccgtttacct gctgcaactg cacaacgcca tgcaaatcgt cttaaacaac cgcatcctca
     2281 cctgcgccca agacgtgagc cgcttccccg acaacggcgc gtacaccggc gaagtgtccg
     2341 ccgaaatgct cgccgacacc ggcacagaca tcgtcctcat cggacactcc gaacgcagcc
     2401 tttatttcgg cgaaaaaaac gaaatccaac gccgcaaaat ggaaaacgtc ctcaacgtcg
     2461 gactcatccc gttattgtgc gtcggcgaaa gcctcgaaga gcgcgaagcc ggcaaagaac
     2521 acgaagtcat cgcccatcag ctttccatcc tgcaagggct ggataccaaa aacatcgccg
     2581 tcgcctacga acccgtctgg gcgatcggca ccggcaaagt cgccaccgtc gaacagattg
     2641 ccgatatgca cgcattcatc tacaaagaaa tcttgtcttt gtgcggaagc gatgttaaaa
     2701 tccgcgtcct ttacggcgga agtgtgaaag cggacaacgc ggccgacatc ttcgcagtac
     2761 cttatgtgga cggcgcactc gtcggcggcg cgtcattgtc gtacgactcc tttaccgcca
     2821 tcatcagtgc cgcacaaaat gcgtagaaaa atatggaagc cttcaaaacc ctaatttgga
     2881 ttgttaatat aatttccgct ttggccgtca tcgtgttagt attgctccaa cacggcaaag
     2941 gcgcggatgc cggcgcgact ttcggatcgg gaagcggcag cgcgcaaggc gtattcggct
     3001 ctgccggcaa cgctaacttc ctcagccgtt cgaccgccgt tgcagcaaca tttttctttg
     3061 caacctgcat ggctatggtg tatattcaca cccacacgac aaaacacggt ttggacttca
     3121 gcaacgtaca acaaactcag caagcaccca aacccgtaag caataccgaa ccttctgccc
     3181 ctgttcctca gcagcagaaa taacagtttt tcaaatgccg acatggtgaa attggtagac
     3241 acgctatctt gagggggtag tggccgtagg ctgtgcgagt tcaaatctcg ctgtcggcac
     3301 caacacacaa aaacgcctga aaatttcagg cgttttttgt tcaatcccat ccaacgctgt
     3361 caaccaattc caatcaatac aaggatttca ggctgattgt tatcctgccg tcccccttcc
     3421 tgacagtgca atcccgtcca atccgcccta attgaagtaa cctaaaattt acggtatctt
     3481 ttgcggtatc tgaaaaatac ctcgaaaaaa taccgcaaaa ataaagctga acgaccgcca
     3541 aatcaggaat gccaagcgga aaagagcttg cggggaatac tgccaagacg tagggaacaa
     3601 gggggaaacc gtccaagatg cagggcggtt tttttgggtt tttggaaaaa acctatacta
     3661 ggaagcgata cccttagttg ttaccttgtt accggggaaa agttagataa ataagcatat
     3721 gaaatatagt gaattaaatt taaatcagga caaggcggcg agccgcagac agtacaaata
     3781 gtac
//
LOCUS       DAWGNT010000172         3731 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.172, whole genome shotgun sequence.
ACCESSION   DAWGNT010000172 DAWGNT010000000
VERSION     DAWGNT010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3731
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.172"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..1011
                     /locus_tag="WHR98_001771"
     CDS             <1..1011
                     /locus_tag="WHR98_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HEZ2308412.1"
                     /translation="AEPHVPVSIPTATPLPAGEVTLSDDSVNIVNINTANTETHPPRR
                     TRRSLYASPQNTSAGISIQQREVEKDYFGYKSKETSFIFQTPGGAQYALSSYSDPIVP
                     SYSSPDFKIPDRHAGQRLADGSRIFICCSDSGATREAEITKQDYMKFGAWIGPNGEID
                     LFAGGFPVGKTPTSSSYYGSSTPETQGKGKITYQVWGIRVKDGQFVTSSYTPPKGSSF
                     TGYTNTPVLSFITANFNSNKLAGEIRGNSDYGPSVKIENATISGPSFSGNATSGGKTG
                     NLEGKFFGKFNGSYGNTETSIGGKITFKDDRSLDTVFGGVSYVKKLDETANRDTEHLT
                     KQ"
     gene            1039..3465
                     /gene="hupB"
                     /locus_tag="WHR98_001772"
     CDS             1039..3465
                     /gene="hupB"
                     /locus_tag="WHR98_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010981084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemoglobin-haptoglobin-utilization protein HupB"
                     /protein_id="HEZ2308413.1"
                     /translation="MSIPFKPVLAAAAIAQAFPAFAADPAPQSAQTLNEITVTGTHKT
                     QKLGEEKIRRKTLDKLLVNDEHDLVRYDPGISVVEGGRAGSNGFTIRGVDKDRVAINV
                     DGLAQAESRSSEAFQELFGAYGNFNANRNTSEPENFSEVTITKGADSLKSGSGALGGA
                     VNYQTKSASDYVSEDKPYHLGIKGGSVGKNSQKFSSITAAGRLFGLDALLVYTRRFGK
                     ETKNRSTEGDVKIENKGYVFSPTQSFSKYQTYVATGVARSQPDPQEWVNKSTLFKLGY
                     NFNDRNRIGWIFEDSRTDRFTNELSNLWTGTIYSPATGDYRHRQDVSYRRRSGVEYKN
                     ELEHGPWDSLKLRYDKQRIDMNTWTWDIPKNYDLRGINSEVYHSFRHIRQNTAQWTAD
                     FEKQLDFSKAVWAAQYGLGGGRGDNANSDYSYFAKLYAPKILASNQAKITMLIENRSK
                     YKFAYWNNAFHLGGNDRFRLNAGIRYDKNSSSAKDDPKYTTAIRGQIPHLGSERAHAG
                     FSYGTGFDWRFTKHLHLLAKYSTGFRAPTSDETWLLFPHPDFYLKANPNLKAEKAKNW
                     ELGLAGSGKAGNFKLSGFKTKYRDFIELTYMGVSSDDKNNPRYAPLSDGTALVSSPVW
                     QNQNRTAAWVKGIEFNGTWNLDSIGLPKGLHTGLNVSYIKGKATQNNGKETPINALSP
                     WTAVYSLGYDAPSKRWGINAYATRTAAKKPSDTVHSNDDLNNPWPYAKHSKAYTLFDL
                     SAYLNIGKQVTLRAAAYNITNKQYYTWESLRSIREFGTVNRVDNKTHAGIQRFTSPGR
                     SYNFTIEAKF"
BASE COUNT         1015 a         1185 c          853 g          678 t
ORIGIN      
        1 gccgaaccgc acgtccccgt gtccatcccc accgccaccc cgctgcccgc cggcgaggta
       61 acgttatcag acgatagcgt caatatcgta aacatcaaca ccgccaacac tgaaacacat
      121 ccgccgcgcc gcaccagacg ctccctctat gcctccccgc aaaacacatc cgccggtatt
      181 tccattcagc agcgggaagt agaaaaagac tatttcggct ataaatcaaa agaaacatct
      241 ttcatcttcc aaacacccgg cggcgcgcaa tacgcccttt catcttattc cgaccccatc
      301 gtccccagct actcctcccc cgatttcaaa attcccgacc gccacgcagg gcagcggctt
      361 gcagacggca gccgcatctt tatctgctgc agcgactccg gggcaaccag agaagcggaa
      421 attaccaaac aagattatat gaaattcggg gcatggatag gtcccaacgg cgaaatcgac
      481 ctcttcgccg gcggcttccc cgtcggcaaa acaccgacat caagcagtta ttacggcagc
      541 agcacgcccg aaacccaagg caaaggcaaa atcacttatc aggtttgggg catccgcgtc
      601 aaagacgggc aatttgttac ctcctcttat acgccgccca aaggcagctc ttttaccggc
      661 tacaccaaca cccccgtcct ttcctttatc accgccaatt tcaacagcaa caaactggca
      721 ggcgaaatcc gcggcaacag cgattacgga ccgagtgtga aaattgaaaa cgcaacgatc
      781 agcggtccga gcttttccgg caatgccacc tccggcggca aaaccggcaa cttggaaggc
      841 aagttttttg gaaaattcaa cggcagctac ggcaacactg aaaccagcat aggcggcaaa
      901 atcactttta aagacgaccg ctccctcgat accgtattcg gcggtgtgag ttatgtaaaa
      961 aaacttgatg aaaccgccaa tcgagatacc gaacacctta ctaaacaata aaccatctca
     1021 tccctacaaa ggtttcttat gtccatcccc ttcaaacccg tattggctgc cgccgccatc
     1081 gcccaagcgt ttcccgcctt tgcggcagac cccgcgccgc agtccgccca aacgctgaac
     1141 gaaatcaccg ttaccggcac gcacaaaacc caaaaactcg gcgaagaaaa aatccgccgc
     1201 aaaaccttag acaagctctt ggtcaacgac gaacacgacc tggtgcgcta cgaccccggc
     1261 atttccgtcg tcgaaggcgg cagggcgggt tctaacggct ttaccatacg cggcgtggac
     1321 aaagaccgcg tcgccatcaa cgttgacggg ctggcgcagg cggaaagccg ctcttccgaa
     1381 gccttccaag aattgttcgg cgcgtacggc aacttcaacg ccaaccgcaa cacttccgag
     1441 ccggaaaact tttccgaagt aaccatcacc aaaggcgcgg actcgctcaa atccggcagc
     1501 ggcgcattgg gcggcgcagt caattaccaa accaaatccg caagcgatta tgtttccgaa
     1561 gacaagccct accatttggg gataaagggc ggcagcgtcg gcaaaaacag ccaaaagttc
     1621 agcagcatca ccgccgccgg caggctcttt ggtttggatg ccttattggt ttatacccgc
     1681 cgcttcggca aagaaaccaa aaaccgctcg accgagggcg atgtcaaaat tgaaaacaag
     1741 ggatatgttt tcagcccaac ccaatcattc agcaagtacc agacctacgt agccacaggg
     1801 gttgcgcgct cccaacccga cccgcaagaa tgggtaaaca aaagcacctt gttcaagctg
     1861 ggctacaatt tcaacgaccg caaccgcatc ggctggattt ttgaagactc ccgcaccgac
     1921 cgttttacca acgagctgtc taatttgtgg acgggtacaa tttactctcc cgcaacgggc
     1981 gactaccgcc accgccaaga cgtgagctac cgccgccgct ccggcgtcga atacaaaaac
     2041 gaattggaac acggcccgtg ggacagcctc aagctgcgct acgacaagca gcgcatcgat
     2101 atgaacactt ggacttggga catcccgaaa aattacgatt tgcgcggcat caacagtgaa
     2161 gtttaccatt cgttccggca tatccgccaa aacaccgcgc aatggactgc cgattttgaa
     2221 aaacaactcg acttttccaa agccgtttgg gcggcgcaat acggcttggg cggcggcaga
     2281 ggggacaatg ccaactcgga ttacagctat ttcgcaaaac tgtacgcccc caaaatcctc
     2341 gcttccaacc aagccaaaat cacaatgctg atcgaaaacc ggtcgaaata taaatttgcc
     2401 tattggaaca atgcgtttca cttgggcggc aacgaccgct tccgcctgaa tgcgggcata
     2461 cgctacgaca aaaacagcag cagcgcgaaa gacgatccga aatacaccac cgccatccgg
     2521 gggcagattc cccatttggg ttcggaacgc gcgcacgcgg gcttcagcta cggcacgggg
     2581 ttcgactggc ggtttaccaa gcatctgcac ttgttggcaa aatacagcac cggcttccgc
     2641 gcaccgactt cggacgaaac ttggctactg ttcccacacc ccgatttcta cctgaaagcc
     2701 aacccaaacc tgaaagccga aaaagccaaa aactgggaat tgggtctggc gggcagcggc
     2761 aaagcgggca acttcaagct ctcgggcttc aaaaccaaat accgcgactt tatcgaattg
     2821 acgtatatgg gcgtttcgtc agacgataaa aacaacccca gatacgcccc gctttccgac
     2881 ggtactgcat tggtcagctc gcccgtttgg caaaaccaaa accgcaccgc cgcctgggtg
     2941 aaaggcatag agtttaacgg cacttggaac ctcgacagca tcgggctgcc caaagggctg
     3001 cacaccggcc tcaacgtcag ctacatcaag ggcaaggcaa cgcaaaacaa cggcaaagaa
     3061 acgcccatca acgcgctttc gccgtggacg gcggtttaca gcctgggcta tgacgcgcct
     3121 tccaaacgct ggggcatcaa cgcctacgcc acacgcaccg ccgccaaaaa gccgtccgac
     3181 accgtacaca gcaacgacga cttgaacaac ccgtggcctt atgccaaaca cagcaaggcc
     3241 tatacgctgt tcgacctttc cgcctacctc aacatcggca aacaggttac gctccgcgcc
     3301 gccgcgtaca acattaccaa caagcagtac tacacttggg aatctttacg cagcatccgc
     3361 gaattcggca cagtcaaccg cgttgacaac aaaacccacg ccggcatcca acgctttacc
     3421 tcgccgggca ggagctacaa tttcaccatc gaagcgaagt tctaagctcc tgatgtgcca
     3481 atgccgtctg aaacccgatg atttgggttt cagacggcat tttttacggt cgcaccgccg
     3541 ccccctttca ggcttgtacc aagcccaatc ccgcaactct ccgtcattcc cgcgactctc
     3601 cgtcattccc acggaagtgg gaatctagaa acgcaaagct gcaagaattt atcggaaatg
     3661 actgaaactc aacgaacctg gattcccgcc tgcgcgggaa tgacgaagct atccgcacag
     3721 aaacctgcac c
//
LOCUS       DAWGNT010000173         3707 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.173, whole genome shotgun sequence.
ACCESSION   DAWGNT010000173 DAWGNT010000000
VERSION     DAWGNT010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.173"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..178
                     /locus_tag="WHR98_001773"
     CDS             <1..178
                     /locus_tag="WHR98_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009347026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308414.1"
                     /translation="ALIAAKIDQAEISDSEKSWLKKELGKIKDTALSTLTENAINAIP
                     AATLITLLKKFVGL"
     gene            complement(175..681)
                     /locus_tag="WHR98_001774"
     CDS             complement(175..681)
                     /locus_tag="WHR98_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014574062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HEZ2308415.1"
                     /translation="MAHPQEIREKLRRLYVSGEQTLETAALMCEIPQTTARAWKRADK
                     EKGDDWDKMRAAYTLAGGGIEDLSRAMLAGFMVQYNSTMTMLQDSSTEDLPPSDRAKL
                     LASLTDAFTKTVSANARVMPETSKLATALELIEFLMAFVQEKHPKHLPAFVEVLEPFG
                     VEVEKKFG"
     gene            complement(684..881)
                     /locus_tag="WHR98_001775"
     CDS             complement(684..881)
                     /locus_tag="WHR98_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308416.1"
                     /translation="MSDPILEALARIENKTDQTLKNQKEMQAEIAQIRQDTKRTAITF
                     GALGGGVITVGWELLKAKMGL"
     gene            complement(878..1144)
                     /locus_tag="WHR98_001776"
     CDS             complement(878..1144)
                     /locus_tag="WHR98_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308417.1"
                     /translation="MDFEFGFRTLWPIATAAFWFWVNGISGRLKEADKRIDDLKEELH
                     AVKLSYHTKQDAKADRDNIAASLGRIENKLEKVNEKLDRKADKS"
     gene            complement(1156..1494)
                     /locus_tag="WHR98_001777"
     CDS             complement(1156..1494)
                     /locus_tag="WHR98_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308418.1"
                     /translation="MTYRELVERQLAVRHADLELGLSRAREQEPFVIHVSDLLDKAGI
                     EYAVRMDKDFQTTFHLEYPITNYDTFKRAVWQTLGAYYCVCNDGDGLEIASNRPDGYA
                     VRIVFGDVPV"
     gene            complement(1491..1709)
                     /locus_tag="WHR98_001778"
     CDS             complement(1491..1709)
                     /locus_tag="WHR98_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308419.1"
                     /translation="MNEYTFSYRFNGKSWSLSIWADNPEEARAKFRAARENAHYDGEV
                     VAKVYTFVNISWVKKLYKRTKYLMGIKE"
     gene            1722..1892
                     /locus_tag="WHR98_001779"
     CDS             1722..1892
                     /locus_tag="WHR98_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HEZ2308420.1"
                     /translation="MYFEIYKDVKGEYRWRLKAANHEIIAQGEGYTSKQNCQHAVDLL
                     KSTTAATPVKEV"
     gene            complement(1937..2242)
                     /locus_tag="WHR98_001780"
     CDS             complement(1937..2242)
                     /locus_tag="WHR98_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002245357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308421.1"
                     /translation="MSLLKTVKMQAAVVLTALAITACSSTTAPSATEIKVVEKAVLPT
                     PPAALMVAPVRPNPPKDGKTATLLEHAAEFGGYVAELENQNQAWRDWAGNHSRKVGN"
     gene            complement(2139..2558)
                     /locus_tag="WHR98_001781"
     CDS             complement(2139..2558)
                     /locus_tag="WHR98_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308422.1"
                     /translation="MNLVKLLANNWQPIAIIALVGTLLAVSHHQGYKSAFAKQQAVID
                     KMEKDKAQALLLSAQNYARELEQARAEAKKYEVKAHAVGMALAKKQAEVSRLKTENKK
                     EIENVLTQDRKNAGGGCIDGFGHHGLQLYNRALGYGN"
     gene            complement(2530..2766)
                     /locus_tag="WHR98_001782"
     CDS             complement(2530..2766)
                     /locus_tag="WHR98_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308423.1"
                     /translation="MRILDIFKNPATGNVSHSKLWANVACAAGTVKFVMLPDPSAEIW
                     AVYLGIVGGYAVARSLVSVKRQEVENESRETAGE"
     gene            complement(2769..2933)
                     /locus_tag="WHR98_001783"
     CDS             complement(2769..2933)
                     /locus_tag="WHR98_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003751173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308424.1"
                     /translation="MGQVAFYEKMIGLWSAKSREASEQADLAAFEFAEGELANYQEML
                     KRHLQTKSVE"
     gene            complement(2936..3142)
                     /locus_tag="WHR98_001784"
     CDS             complement(2936..3142)
                     /locus_tag="WHR98_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308425.1"
                     /translation="MNIIGKLKEAASYFLTKLIGENPSNEQVNRALIQMPNVRPIHTY
                     PRPNLRNSGVAAAKRAARKRKNRR"
     gene            complement(3139..3681)
                     /locus_tag="WHR98_001785"
     CDS             complement(3139..3681)
                     /locus_tag="WHR98_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012221570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEZ2308426.1"
                     /translation="MGKTVTLTAGHSNTDPGAVNGSDREADLAQDMRNIVAAILRDDY
                     GLTVKTDGTGKGNMPLREAVKLIRGSDVAIEFHTNSAAGKAATGIEALSTVKNKRWCQ
                     VLSKAVAKKTGWKLRGEDGFKPDNAGHHSRLAYAQAGGIVEPFFISNDTDLALFKTTK
                     WGICRAIADAIAMKLGAARV"
BASE COUNT          851 a         1065 c          826 g          965 t
ORIGIN      
        1 ggctttaatt gcggcaaaaa tagaccaagc ggagatttct gattcagaaa aaagctggct
       61 gaaaaaagaa ttagggaaaa tcaaggacac tgcattaagt acgcttacgg aaaatgcaat
      121 taatgctatc cctgccgcca ccctcattac tcttttaaaa aaatttgtcg gcctctaacc
      181 aaacttcttc tccacttcca ccccaaacgg ctccaatacc tccacaaagg caggcaaatg
      241 tttgggatgt ttttcttgca caaacgccat caagaactca atcaattcca aagccgtcgc
      301 cagttttgac gtttccggca tcacacgcgc attggcggat acggttttcg taaacgcatc
      361 ggtcaggctg gccaacagct tggcgcggtc cgatggcggc aaatcttcgg tactcgaatc
      421 ctgcagcatc gtcatcgtgc tgttgtactg caccataaaa ccggccaaca tcgcacggct
      481 caagtcctca ataccgccgc cggccaaagt gtaggcggcg cgcatcttat cccagtcgtc
      541 gcctttttcc ttatccgcac gtttccacgc acgcgcagtg gtctgcggga tttcgcacat
      601 caaggccgcc gtttccaaag tttgctcgcc gctcacatag agccggcgta acttttcacg
      661 gatttcttgc gggtgagcca taattacagt cccattttcg ctttaagcaa ttcccagccg
      721 accgtaatca cgccgccgcc cagtgcgccg aatgtaatgg ccgtgcgttt cgtgtcttgg
      781 cggatttgcg caatttccgc ctgcatttct ttctgatttt tcagcgtttg atcagtcttg
      841 ttttcaatac gcgccaaggc ttctaaaatc gggtcgctca tgatttgtct gctttcctgt
      901 ccagtttttc gtttactttt tccaacttgt tttcgatgcg tcccaacgaa gccgcaatat
      961 tgtcgcggtc tgccttggca tcttgcttgg tgtgataaga gagcttgacc gcgtgcagct
     1021 cctctttcag gtcgtcgata cgcttgtccg cttctttcag acggcctgaa ataccgttga
     1081 cccaaaacca aaatgccgcc gtcgcaatcg gccacagggt tctgaaacca aattcaaagt
     1141 ccatttaaaa cccctttaaa ccggcacatc gccgaatacg atacggacgg cgtaaccgtc
     1201 agggcgattg ctggcaatct ccagtccatc accatcatta caaacacagt aatacgcccc
     1261 caaagtttgc caaaccgcac gtttaaaggt gtcatagttc gtaattggat attcaaggtg
     1321 aaacgtcgtc tgaaaatcct tatccatgcg taccgcgtac tcaatgcctg ccttatccaa
     1381 cagatcggaa acatgaatga caaacggctc ttgttcgcgt gcgcggctta agcccaattc
     1441 caaatcggca tggcgcacag ccaactgacg ttcaactaat tcacggtagg tcattctttg
     1501 atacccatta aatattttgt ccgcttgtac aatttcttaa cccacgaaat atttacaaat
     1561 gtataaacct ttgctacaac ttcgccgtca tagtgcgcat tttctcgtgc agcccgaaat
     1621 ttcgccctgg cttcttcagg gttgtccgcc caaatgctca atgaccagga cttgccgtta
     1681 aagcggtaag aaaacgtgta ctcattcata ggagaaacct tatgtatttt gaaatctata
     1741 aagacgtaaa aggcgaatac cgttggcgtt tgaaagcagc caaccatgaa atcatcgctc
     1801 agggcgaagg ctacaccagc aagcaaaact gtcagcacgc agtcgatttg ctgaaaagca
     1861 ctaccgccgc tacccctgta aaagaggtat aaaatccgct ttcaccctca gcccgcgccc
     1921 tacgcgggct tttttgtcag tttccgactt tgcgggagtg attgcccgcc cagtcgcgcc
     1981 aagcctgatt ttgattttcc aactccgcca catagccgcc aaactcggcg gcgtgttcca
     2041 acagcgtggc cgtcttgccg tctttcggcg gattcgggcg caccggcgcg accatcaacg
     2101 cggcaggcgg tgtcggcaag accgcctttt cgacaacctt aatttccgta gccgagggcg
     2161 cggttgtaga gctgcaggcc gtgatggcca aagccgtcaa tacaaccgcc gcctgcattt
     2221 ttacggtctt gagtaaggac attttcgatt tcctttttat tttccgtttt cagacggctg
     2281 acttccgcct gttttttcgc caaagccatg ccgacagcgt gcgccttgac ttcatatttt
     2341 ttagcttccg cacgcgcctg ttccagctcg cgggcgtagt tttgagccga caacagcagg
     2401 gcttgcgctt tgtctttttc catcttgtca atgaccgcct gctgcttcgc aaaagccgac
     2461 ttgtagcctt gatggtgcga caccgccaag agcgtgccga caagcgcgat gatggcaatc
     2521 ggttgccagt tattcgccag cagtttcacg agattcattc tcgacctcct gacgtttgac
     2581 gctgaccaac gaacgcgcca ccgcatagcc gccgacaatg cccaaataca ccgcccaaat
     2641 ctccgccgac gggtcgggca gcatcacaaa cttaaccgtc cccgccgcgc aggcaacgtt
     2701 tgcccacagt ttcgagtgcg acacattgcc tgtcgctggg tttttaaaaa tatccaaaat
     2761 acgcattgct attccacact tttggtttgc aggtgccgtt tcagcatttc ctgataattg
     2821 gccagttcgc cctccgcaaa ttcaaacgcc gccaagtctg cctgttcgct tgcctcacgg
     2881 cttttggccg accacagccc aatcatcttt tcgtaaaacg caacctgtcc catgattaac
     2941 gacgattctt gcgtttgcgc gccgcgcgtt tcgcggctgc cacgcctgag tttcttaaat
     3001 ttgggcgtgg ataggtgtgt atcggacgaa catttggcat ctgtataagt gcgcggttta
     3061 cctgctcatt actaggattt tctccaatca attttgtaag aaaataggaa gcagcttctt
     3121 tcaatttacc aataatattc atactcttgc cgcccccaat ttcatcgcaa tcgcgtccgc
     3181 aatcgcgcgg cagatgcccc atttggtcgt cttaaacaag gccaaatcag tgtcgttgct
     3241 gatgaaaaaa ggctcaacaa tgccgccagc ctgcgcataa gccaggcgcg aatgatggcc
     3301 cgcattgtcg ggtttaaagc cgtcttcgcc gcgcagtttc cagccggttt tcttggcaac
     3361 agctttgctc aacacctgac accagcgttt gtttttaacg gtactcaacg cctcaatgcc
     3421 cgtagctgct ttaccggccg ccgagttggt atggaactca atcgccacat ccgagccgcg
     3481 aatcagtttt acagcttcac gcagcggcat attgcctttg cctgtgccgt cggttttaac
     3541 agtcaaaccg tagtcatcgc gcaaaatagc agccacgatg ttgcgcatat cctgcgccaa
     3601 gtccgcctca cggtcgctgc cgttgaccgc acccgggtcg gtgttgctgt gtccagcggt
     3661 taaggttacg gttttgccca ttcatcatct ccaaaaaata ttgattg
//
LOCUS       DAWGNT010000174         3697 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.174, whole genome shotgun sequence.
ACCESSION   DAWGNT010000174 DAWGNT010000000
VERSION     DAWGNT010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3697
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.174"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..412)
                     /locus_tag="WHR98_001786"
     CDS             complement(<1..412)
                     /locus_tag="WHR98_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEZ2308427.1"
                     /translation="MTHISSPRNEFIRGIKESSPILIGLLPWALILGMQGGQKGMSWL
                     EMLLMTSMNFAGGSEFATVNLWAESLPILLIATVTFMINSRHILIGAALAPHLKEIPL
                     KKAVPALFFMCDESWAMAFSEIQKRKAAGLPAFNM"
     gene            557..1009
                     /gene="dut"
                     /locus_tag="WHR98_001787"
     CDS             557..1009
                     /gene="dut"
                     /locus_tag="WHR98_001787"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002226436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEZ2308428.1"
                     /translation="MNIEVEMKVLDERMADFIPAYATEGSAGLDLRACLDEEVVLQPG
                     ETFLVPTGLAIYLANPAYAAVLLPRSGLGHKHGIVLGNLVGLIDSDYQGELKVSLWNR
                     SSEPFTVKPFERIAQMVIVPIVQARFKRVEEFVGSSRGEGGFGSTGLH"
     gene            1085..2272
                     /gene="dapC"
                     /locus_tag="WHR98_001788"
     CDS             1085..2272
                     /gene="dapC"
                     /locus_tag="WHR98_001788"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003752738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyldiaminopimelate transaminase"
                     /protein_id="HEZ2308429.1"
                     /translation="MNTLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTP
                     KVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREA
                     LFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSI
                     SEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNK
                     PLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSA
                     MSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDVKLPDASFYIWLKVPD
                     GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVTDVATCVKAAETIVS
                     LYR"
     gene            2535..3314
                     /gene="yaaA"
                     /locus_tag="WHR98_001789"
     CDS             2535..3314
                     /gene="yaaA"
                     /locus_tag="WHR98_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEZ2308430.1"
                     /translation="MFFVLSPAKNLNEKDPAPVSEFTQPDLLAESDILMQQLRELAPQ
                     QIAELMHVSDKIALLNAQRNAEWHTPFTPENAKQAVFMFNGDVYEGMDANTLDIGQIR
                     YLQNHVRLLSGLYGLLRPLDLIQPYRLEMGTAFANLRGKNLYEFWGDIITNLLNDTLA
                     QAGSNTLVNLASQEYFKSVNTKKLRARLITPIFKDEKNGKYKIISFYAKRARGLMVRY
                     AVEHHITDPEMLKNFNYEGYAFNDAASNESEWVFMRSEQIK"
     gene            3397..3487
                     /locus_tag="WHR98_001790"
     tRNA            3397..3487
                     /locus_tag="WHR98_001790"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3431..3433,aa:Ser,seq:tga)
     gene            3565..3654
                     /locus_tag="WHR98_001791"
     tRNA            3565..3654
                     /locus_tag="WHR98_001791"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3599..3601,aa:Ser,seq:cga)
BASE COUNT          965 a          868 c          912 g          952 t
ORIGIN      
        1 gcatattgaa tgcgggcaaa ccggctgctt tccgtttttg gatttcggag aatgccatcg
       61 cccagctttc atcacacata aaaaacagtg cgggcacggc ttttttcagc ggtatttctt
      121 tcaggtgcgg ggcaagtgcc gccccaatca ggatatgccg cgaattaatc ataaaggtta
      181 cggtggcgat aagcagtatc ggcagagatt ccgcccacag gttgaccgtg gcaaactcgg
      241 agccgccggc gaagttcata ctggtcatca acaacatttc cagccagctc atgccttttt
      301 gtccgccctg cataccgagt attaatgccc aaggcagaag tccgataagt atgggcgaac
      361 tttctttgat gccgcgtata aattcgttac ggggcgagct tatgtgtgtc atattataat
      421 attgatatgt aagaaggtcg ggcattatac acagacggag tatttcaaaa caaaaccgat
      481 ttgccgtgtt tcagcgtaaa cacggcttgt gtataatctc ccatctttaa aaccggccgt
      541 atgcaggagc aagatgatga atattgaagt agaaatgaaa gtgttggacg agaggatggc
      601 ggattttatc cctgcctatg cgacggaggg ttctgctggt ttagatttgc gtgcctgttt
      661 ggatgaggaa gttgtcttgc agccgggtga aacgtttctt gtaccgacag gtttggcaat
      721 ttatttggcg aatcccgcat atgccgccgt tttgctgccc cgttccggat tggggcataa
      781 acacggcatt gttttgggca atttggtcgg cttgattgac tccgattatc aaggggaatt
      841 gaaggtttcg ttatggaaca gaagcagcga gccgtttact gtcaaaccgt ttgagcgtat
      901 cgcgcagatg gttatcgtgc caatcgtgca ggcgcgtttc aaacgtgtcg aggaatttgt
      961 cggaagcagc cgtggagaag gcggtttcgg cagtacgggt ttgcattgaa tataaaatgc
     1021 cgtctgaagg gcacgtcagg ttcagacggc atatcttccg atataccgat aaccggagaa
     1081 aatcatgaat accttactca agcagctcaa accctatccc tttgcccgac tgcacgaggc
     1141 gatgcagggc atttccgcgc ctgaaggcat ggaagccgtc cccctgcaca tcggcgaacc
     1201 gaaacatccg acaccgaaag tcattacgga tgcgctgacc gcctcattgc acgagttgga
     1261 aaaatatccg ctgactgcgg gtctgcctga actgcgtcag gcgtgtgcaa actggttaaa
     1321 acgccgttac gatggcttga cagtggatgc ggataatgaa attctgccgg ttttaggcag
     1381 tagggaggcg ttgttttctt ttgttcaaac cgtgttgaac cctgtttcag acggcatcaa
     1441 acccgcaatt gtcagcccga atccctttta tcagatttac gaaggtgcga cacttttggg
     1501 cggcggtgaa atccattttg ccaattgccc cgcgccgtct ttcaaccccg attggcgtag
     1561 tatttccgaa gaggtttgga aacgcaccaa actggtgttc gtctgctcgc ccaacaaccc
     1621 cagcggcagc gtgctggatt tggacggatg gaaagaagtt tttgatttgc aggacaaata
     1681 tggtttcatt attgcctcgg acgaatgcta ttccgaaatc tatttcgacg gcaacaagcc
     1741 tttgggctgc ctgcaggccg ctgcacagtt ggggcgaagc aggcaaaaac tgcttatgtt
     1801 caccagtttg tccaagcggt ccaatgttcc aggcctgcgt tccggttttg tcgccggcga
     1861 tgccgaactg cttaaaaatt ttctgcttta cagaacctat cacggcagcg caatgagcat
     1921 tcccgtgcag cgcgcaagca ttgccgcttg ggatgacgaa cagcacgtta tcgacaaccg
     1981 ccgcctgtat caggaaaaat ttgagcgcgt tattcccatt ttgcaacagg tatttgacgt
     2041 taaattaccg gatgcctcgt tttacatctg gttgaaagtc cccgatggcg acgatttggc
     2101 atttgcacgc aatttatggc aaaaagccgc tatccaagta ttgcccggac gctttttggc
     2161 acgggatacc gaacagggca atcccgggga aggttatgtg cgtatcgctt tggtcaccga
     2221 tgtcgcaact tgtgtcaaag ctgcggaaac cattgtttcc ctatatcggt aaagaataaa
     2281 aaaatgccgt ctgaactttt gttcagacgg catttttcaa tattttacgg ttgaatttgc
     2341 tataacggta tttatagtgg attaacaaaa atcaggacaa ggcgacgaag ccgaagacag
     2401 tacagatagt acggcaaggc gaggcaacgc tgtactggtt taaatttaat ccactatact
     2461 tcacttttaa tcggcttgcc cgcaaacacg tttaaactta aaatccccgt gtttgacaca
     2521 ataccgagca gattatgttt tttgtccttt cccctgcgaa gaaccttaat gaaaaagacc
     2581 ctgcccctgt cagcgagttt acccaacccg acctgctggc agagtccgac attctaatgc
     2641 agcagttgcg cgagcttgcg ccgcaacaga ttgccgaact gatgcacgtt tccgacaaaa
     2701 ttgccctctt aaacgcgcag cgcaatgcag aatggcacac gccgtttacg ccggaaaacg
     2761 ccaaacaggc ggtctttatg ttcaacggcg atgtttacga aggtatggat gcaaacacat
     2821 tggatattgg acagatacgc tatctgcaaa accatgtccg cctgctgtcc ggtctgtacg
     2881 gtcttcttcg cccgttagac ctgatacagc cctaccgttt ggaaatgggg acggcatttg
     2941 ccaatttgcg cggcaagaat ttgtatgagt tttggggcga catcattacc aaccttttaa
     3001 atgacacgct tgcccaagca ggcagcaata cgcttgtcaa ccttgcctca caggaatatt
     3061 tcaagtccgt caacacgaaa aaacttcggg cgcggctgat taccccgata tttaaagacg
     3121 aaaaaaacgg taaatataaa atcatcagtt tctatgccaa gcgcgcgcgc ggattaatgg
     3181 tgcgctatgc ggtagaacat catattaccg accctgaaat gctgaaaaat tttaattacg
     3241 aaggctacgc attcaatgac gcggcttcaa atgaaagcga atgggttttt atgcgttcgg
     3301 aacaaataaa atgaaaacaa taaattaagt attttccgaa aaaagtgctt ggcaaaatgt
     3361 ataaacttca ttattattcc tactcttcaa gaagacggaa gcgtggcaga gcggtttaat
     3421 gcaacggtct tgaaaaccgt cgagggttga tagccctccg tgagttcgaa tctcaccgct
     3481 tccgccaatc cttgaggtca aaaaccaaat aaaaatgaag tagcataaag catcggcatt
     3541 tttatttggt tttactgcat tatcggaaac gtggcagaga ggctgaatgc agcggactcg
     3601 aaatccgctg agggtgcaaa tcctccgtgg gttcgaatcc caccgtttcc gccacaaaac
     3661 aaaaccgccc tgattcgggg cggttctttt ttgttca
//
LOCUS       DAWGNT010000175         3673 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.175, whole genome shotgun sequence.
ACCESSION   DAWGNT010000175 DAWGNT010000000
VERSION     DAWGNT010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3673
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.175"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            152..325
                     /locus_tag="WHR98_001792"
     CDS             152..325
                     /locus_tag="WHR98_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HEZ2308431.1"
                     /translation="MKSERRHWEWCVDYDWEGVVRDYRFTHKVEKDERSVIRDAVGVI
                     RKEAGKSLSQPEK"
     gene            389..1672
                     /gene="hemL"
                     /locus_tag="WHR98_001793"
     CDS             389..1672
                     /gene="hemL"
                     /locus_tag="WHR98_001793"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEZ2308432.1"
                     /translation="MNRNEILFDRAKAIIPGGVNSPVRAFGSVGGVPRFIKKAEGAYV
                     WDENGTRYTDYVGSWGPAIVGHAHPEVVEAVREAALGGLSFGAPTEGEIAIAEQIAKI
                     MPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTF
                     GNPSSAGVPADFTKHTLVLEYNNIAQLEEAFAQSGNDIACVILEPFVGNMNLVRPTEA
                     FVKALRELTEKHGAVLIYDEVMTGFRVALGGAQSLHGITPDLTTMGKVIGGGMPLAAF
                     GGRKDIMECISPLGGVYQAGTLSGNPIAVAAGLKTLEIIQREGFYENLTALTSRLADG
                     IAAAAKAHGIEFTADSVGGMFGLYFASHTPRNYADMARSNIDAFKRFFHGMLDRGIAF
                     GPSAYEAGFVSAAHTPELIDETVAVAVEVFKAMAA"
     gene            complement(1888..2160)
                     /locus_tag="WHR98_001794"
     CDS             complement(1888..2160)
                     /locus_tag="WHR98_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taxon MazF"
                     /protein_id="HEZ2308433.1"
                     /translation="MPSEAQILHFRRHFYSRLKSKIYTPVIPAQAGIRKVGLVGHEVV
                     LKMKRYRKSDELKEKYSDIDETFEFIKGFIYVIALAFTAYVAIRFF"
     gene            complement(2171..2734)
                     /gene="orn"
                     /locus_tag="WHR98_001795"
     CDS             complement(2171..2734)
                     /gene="orn"
                     /locus_tag="WHR98_001795"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HEZ2308434.1"
                     /translation="MQDKNNLCWLDMEMTGLNPETDRIIEVAMIITDSDLNVLAQSEV
                     YAVHQSDELLDNMDEWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPERATP
                     MCGNSIHQDRRFMVKYMPKLENYFHYRNLDVSTLKELAKRWNPPVAKSVVKRGSHKAL
                     DDILESIEEMRHYREHFLISAPRAEAQ"
     gene            complement(2752..3639)
                     /gene="prmA"
                     /locus_tag="WHR98_001796"
     CDS             complement(2752..3639)
                     /gene="prmA"
                     /locus_tag="WHR98_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEZ2308435.1"
                     /translation="MPYQQITINVNDAVAERLADALMEHGALSAAIEDAYAGTQNEQA
                     IFGEPGMPAEQIWQQSKVIALFGEHDEAAAIIQIAAQECGLKDLAYTGETIEDQDWVR
                     LTQSQFDPIRISDRLWITPSWHEVPEGSAVNLRLDPGLAFGTGSHPTTRLCLKWLDTQ
                     LKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGRDNAEQNNVDAQFFLP
                     DGLPQGQFDVVVANILANPLRMLGEMLAARTKQGGRIVLSGLLDEQAEELGGIYSQWF
                     DLDPAETEEGWARLSGTKR"
BASE COUNT          757 a          968 c         1059 g          889 t
ORIGIN      
        1 ggaagaggga atcgcacaaa cggttgttaa aggcaaaacg acccgggcgg aggtagaggc
       61 acgtttcggg aagcgcaacc ctttcggttg ttatgcctat catgaagtca gcctgccgat
      121 ttataatttt ttgccgacca atttcattta tatgaaatca gaacgccggc attgggagtg
      181 gtgtgtggat tacgactggg aaggagttgt ccgggactac cgctttacac ataaagtgga
      241 aaaagacgag cgttccgtca tccgggatgc ggttggcgtc atccgcaaag aagcaggcaa
      301 atccttgtcg caacctgaaa aatgataaaa tgggactttc tgcttctaag cccgaaacct
      361 gccgttcaga cggcatttga ggataaatat gaaccgtaac gaaattttat tcgaccgcgc
      421 caaagccatc atccccggcg gcgtgaattc ccccgtccgc gcattcggca gcgtcggcgg
      481 cgtgccgcgc ttcatcaaaa aagccgaagg cgcgtatgtt tgggacgaaa acggcacgcg
      541 ttataccgac tatgtcggct cttgggggcc tgcgattgtc ggacacgcgc accccgaagt
      601 cgtcgaagcc gtgcgcgaag ccgcgttggg cggtttgtcg ttcggcgcgc ccaccgaggg
      661 cgaaatcgcc attgccgaac aaatcgccaa aatcatgccg tccgtcgaac ggctgcgcct
      721 cgtcagctcc ggtaccgaag cgacgatgac cgccatccgt ttggcacgcg gttttaccgg
      781 tcgcgacaaa atcatcaagt ttgaaggctg ctaccacggg cattccgaca gcctgctggt
      841 gaaagcaggc agcggtctgc tcaccttcgg caatccttct tccgccggtg tgcctgccga
      901 ctttaccaaa cacaccttag tcctcgaata caacaacatc gcccaattgg aagaagcctt
      961 tgctcaaagc ggcaatgaca ttgcctgtgt gattttggag ccttttgtcg gcaatatgaa
     1021 ccttgtccgc ccgaccgaag ccttcgtcaa agccctgcgc gaattgactg aaaaacacgg
     1081 cgcggtgttg atttacgacg aagtgatgac aggtttccgc gtcgcactcg gtggcgcaca
     1141 atcgctgcac ggcatcacgc ccgacctgac cacgatgggc aaagtcatcg gcggcggtat
     1201 gccgcttgcc gcgttcggcg gacgcaaaga cattatggaa tgtatttccc cgctgggcgg
     1261 cgtgtatcag gcaggcactt tgtcgggcaa cccgattgcc gtcgccgccg gcttgaaaac
     1321 gctggaaatc attcagcgcg aaggcttcta tgaaaacctg actgccctga ccagccgcct
     1381 cgccgacggt attgccgccg ccgccaaagc gcacggtatc gaattcaccg ccgacagcgt
     1441 gggcggtatg ttcggtctgt attttgccag ccatacgccg cgaaactatg ccgatatggc
     1501 gcgatccaat atcgacgctt tcaaacgctt cttccacggc atgctcgacc gcggcattgc
     1561 ctttggcccg tccgcttatg aagcaggttt cgtttctgcc gcgcatacgc ccgagctgat
     1621 tgacgaaacg gttgcggttg cggttgaagt gttcaaggcg atggctgcat gatgttttga
     1681 cggacagagt ttctctgttc gatttgtttg gcagattgaa gtaagaatgc acaccgccgt
     1741 cattcccgcg caggcgggaa tccagacctt tcagtttctg taatgattga aaataacggg
     1801 ccgaaatcag ccgcgcccgg caggaagccg ccgccacctg aaacaatgcc gtctgaagcc
     1861 ttcagacggc attttatcgg aagcgcatca gaaaaaacgg atagcgacat atgcggtaaa
     1921 agcaagggca attacataga taaacccctt tataaattca aaagtctcat ctatatcgct
     1981 atatttttct ttcagttcgt cagattttcg ataacgtttc attttcaaga ccacttcatg
     2041 accaacaagc ccgaccttcc ggattcccgc ctgcgcggga atgacgggcg tgtatatttt
     2101 tgatttcaat ctgctgtaaa aatgccgtct gaaatgcagg atttgcgctt cagacggcat
     2161 tttttgtttc ttattgcgct tcggctctcg gggcggaaat cagaaagtgt tcgcggtagt
     2221 ggcgcatttc ttcgatgctc tccaaaatgt cgtccaatgc cttgtgcgaa ccgcgtttga
     2281 cgacgctttt ggcaacgggc ggattccagc gtttggcgag ttctttcagc gtggaaacgt
     2341 cgaggttgcg gtagtggaag tagttttcca gttttggcat atatttgacc atgaagcgcc
     2401 ggtcttggtg gatggagttg ccgcacatcg gcgtggcgcg ttcgggtacc cattccgaca
     2461 taaagtccag cagtttctgt tcgacttcgg cttcggtatg cgacgattca cgtacgcgct
     2521 gtgtcagccc cgtcctgccg tgtgtggcgg tgttccactc gtccatattg tcgagcagct
     2581 cgtcactttg gtggacggcg taaacttcgg attgcgccaa tacattcaaa tccgagtcgg
     2641 taataatcat cgcgacttcg ataatgcggt cggtttcggg attaagcccc gtcatttcca
     2701 tatcgagcca gcagaggttg tttttgtcct gcacggtgtt tcctttccgt ttcagcgttt
     2761 tgtcccgctc aagcgcgccc agccttcttc ggtttccgcc gggtcgaggt cgaaccattg
     2821 gctgtaaatg ccgccgagtt cttcggcctg ttcgtctaac aaaccggaca acacgatgcg
     2881 tccgccttgt ttggtgcggg cggcgagcat ttcgccgagc atacgcaaag ggttggcgag
     2941 gatgttggcg acaactacgt cgaattgccc ttgaggcagg ccgtcgggca ggaagaattg
     3001 tgcatcgacg ttgttctgtt cggcgttgtc cctgccggcg cggacggctt gttcgtcaat
     3061 atcgacgccg acggcagaac ctgcgccgag tttgagggcg gcgatggtca ggatgcccga
     3121 accgcagccg tagtcgagga cgctttcgcc gtttttgagt tgcgtatcca accatttgag
     3181 gcagaggcgc gtggtcgggt ggctaccggt gccgaaggcg agtccggggt cgaggcggag
     3241 gttgacggcg ctgccttcgg ggacttcgtg ccaagagggg gtaatccaca ggcggtcgga
     3301 aatccggatg gggtcgaatt gcgattgcgt gagacgcacc cagtcttggt cttcgatggt
     3361 ttcgccggtg tatgccaagt cttttaaccc gcattcttgt gcggcgattt ggatgatggc
     3421 ggcggcttcg tcgtgttcgc cgaacagggc gatgactttg ctctgctgcc agatttgttc
     3481 ggcgggcata ccgggttcgc cgaaaatcgc ctgttcgttt tgcgtgccgg cgtaggcatc
     3541 ttcgatggcg gcggagagtg cgccgtgttc catcagcgcg tcggcgaggc gttcggcgac
     3601 ggcatcgttg acgttgatgg tgatttgttg gtagggcata acgggctttc ttggaaatat
     3661 agtggattga att
//
LOCUS       DAWGNT010000176         3512 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.176, whole genome shotgun sequence.
ACCESSION   DAWGNT010000176 DAWGNT010000000
VERSION     DAWGNT010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3512
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.176"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            100..1215
                     /gene="lst"
                     /locus_tag="WHR98_001797"
     CDS             100..1215
                     /gene="lst"
                     /locus_tag="WHR98_001797"
                     /EC_number="2.4.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyllactosaminide
                     alpha-2,3-sialyltransferase"
                     /protein_id="HEZ2308436.1"
                     /translation="MGLKKACLTVLCLIVFCFGIFYTFDRVNQGERNAVSLLKDKLFN
                     EEGEPVNLIFCYTILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDKAER
                     AYFFHLPYGLNKSFNFIPTMAELKVKAMLLPKVKRIYLASLEKVSIAAFLSTYPDAEI
                     KTFDDGTINLIQSSSYLGDEFSVNGTIKRNFARMMIGDWSIAKTRNASDEHYTIFKGL
                     KNIMDDGRRKMTYLPLFDASELKAGDETGGTVRILLGSPDKEMKEISEKAAKNFNIQY
                     VAPHPRQTYGLSGVTTLNSPYVIEDYILREIKKNPHTRYEIYTFFSGAALTMKDFPNV
                     HVYALKPASLPEDYWLKPVYALFTQSGIPILTFDDKD"
     gene            complement(1379..1837)
                     /locus_tag="WHR98_001798"
     CDS             complement(1379..1837)
                     /locus_tag="WHR98_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEZ2308437.1"
                     /translation="MKTQISLAAAAITLLLSACGGSGIPSQPKGEISENRTAAFKSMM
                     PEFTRMGKMVKDEEPYDVEKFKQAAASFAESSKKPFTLFESDPQGNGRALPAVWSDGA
                     KFEAEKTKFAAAVEKLNAAAQTGKLDEIKAAYGETGASCKSCHDSFRAPE"
     gene            1956..2777
                     /locus_tag="WHR98_001799"
     CDS             1956..2777
                     /locus_tag="WHR98_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEZ2308438.1"
                     /translation="MAVLITGASAGFGEAMCRAFVGAGYRVIGAARRADRLQALADEL
                     GALFYPLEMDVSRRESVENALNGIPDEFSDIDCLINNAGLALGLDTADKADFEDWETM
                     IQTNVLGLTFLTRKILPQMVERGGGYVMNLGSIAGNYAYAGSNVYGATKAFVRQFSLN
                     LRAELADKNIRVTNIEPGLCGNTEFSNVRFKGDDERAAGVYEGVEFIRPEDIAETALW
                     LYQRPAHMNVNTIEIMPVAQTFAGMKVIKKAVPEVREDFEKQSMSLFSRIRSWFK"
     gene            complement(2828..3274)
                     /gene="yciA"
                     /locus_tag="WHR98_001800"
     CDS             complement(2828..3274)
                     /gene="yciA"
                     /locus_tag="WHR98_001800"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HEZ2308439.1"
                     /translation="MQHEEGNRQRPQGELLLRTVAMPRDTNPNQDIFGGWIMSQMDLG
                     GGILAAEIARGRIVTVAVQEMNFIRPVKVGNVVCCYGHCVRVGNTSLQLKVDVWVKTL
                     MNDCVTEDRYLVTEAVFTYVAIDAEGNPRPIPKEGNPKLAGLLPTP"
BASE COUNT          826 a          762 c         1009 g          915 t
ORIGIN      
        1 tattcggtaa ctgtcggaat atctgctaaa attccgcatt tttccgtccc gggacactcg
       61 gggcgtatgt tcaatttgtc ggaatggagt tttagggata tgggcttgaa aaaggcttgt
      121 ttgaccgtgt tgtgcctgat tgttttttgt ttcgggatat tttatacatt tgaccgggta
      181 aatcaggggg aaaggaatgc ggtttccctg ctgaaggaca aactcttcaa tgaagagggg
      241 gaaccggtca atctgatttt ctgctatacc atattgcaga tgaaggtggc ggaaaggatt
      301 atggcgcagc atccggggga gcggttttat gtggtgctga tgtctgagaa caggaatgaa
      361 aaatacgatt attatttcaa tcagataaag gataaggcgg agcgggcgta ttttttccac
      421 ctgccctacg gtttgaacaa atcgtttaat ttcattccga cgatggcgga gctgaaggtg
      481 aaggcaatgc tgctgccgaa ggtcaagcgg atttatttgg caagtttgga aaaagtcagc
      541 attgccgcct ttttgagcac ttacccggat gcggaaatca aaacctttga cgacgggaca
      601 atcaatttaa ttcaaagcag cagctatttg ggtgatgagt tttctgtaaa cgggacgatc
      661 aagcggaatt ttgcccggat gatgatcgga gattggagca tcgccaaaac ccgtaatgct
      721 tccgacgagc attacacgat attcaagggt ttgaaaaaca ttatggacga cggccgccgc
      781 aagatgactt acctgccgct gttcgatgcg tccgaactga aggcggggga cgaaacgggc
      841 ggcacggtgc ggatactttt gggttcgccc gacaaggaga tgaaggaaat ttcggaaaag
      901 gcggcaaaaa acttcaacat acaatatgtc gcaccgcacc cccgccaaac ctacgggctt
      961 tccggcgtaa ccacattaaa ttcgccctat gtcatcgaag actatatttt gcgcgaaatt
     1021 aagaaaaacc cgcatacgag gtatgaaatt tatacctttt tcagcggtgc ggcgttgacg
     1081 atgaaggatt ttcccaatgt gcacgtttac gcattgaaac cggcttccct tccggaagat
     1141 tattggctca agccggtgta tgccctgttt acccaatccg gcatcccgat tttgacattt
     1201 gacgataaag attaatcgca tagcaaatca aaatagaaaa tggcggagta agtaaggcaa
     1261 aaatcaggat atggcgtatt ttttgaattg aagataattt ttgattgctt tgcgcttggt
     1321 gaaatggcaa agaaaatgcc gtctgaaggc ttcagacggc attgttctgt ttcggatgtt
     1381 attcgggtgc gcggaaactg tcgtggcagg atttgcagct tgcgccggtt tcgccgtagg
     1441 cggctttgat ttcatccagt ttgccggttt gtgctgcggc gttgagtttt tcgacggcgg
     1501 cggcgaattt tgttttttcg gcttcaaatt ttgcaccatc cgaccaaacg gcgggcaggg
     1561 cgcggccgtt gccttgcgga tcggactcaa aaagtgtgaa cggtttcttg ctgctttcgg
     1621 caaacgacgc tgccgcctgt ttgaattttt cgacatcgta aggttcttcg tctttgacca
     1681 ttttgcccat gcgtgtgaat tcgggcatca tggatttgaa cgcggcggtg cggttttcgg
     1741 aaatttcgcc tttgggttgg gaaggtattc cgctgcctcc gcaggcggaa aggagcagtg
     1801 tgatggcggc agcagcaagg ctgatttggg ttttcatatt gaatgtgtcc tgtcgtggtg
     1861 gtatggttgt tgtcattttc agtcggcgcg atgccgtctg aagggtgtta tgatacctga
     1921 aacaggtttg ggaaacgaga aagaaaggaa aaacaatggc tgttttaatt accggtgctt
     1981 cggcaggatt cggcgaagcg atgtgccgtg cgtttgtcgg ggcgggatac cgcgttatcg
     2041 gtgcggcgcg ccgtgcggac aggcttcagg ccttggcgga tgaattgggt gctttgtttt
     2101 accctttgga aatggacgtg tcgcgacgcg agtcggtgga aaacgcctta aacggcatcc
     2161 ccgatgaatt ttccgacatc gactgcctca tcaacaatgc cgggctggct ttgggtctgg
     2221 acacggcgga caaggcggat tttgaagatt gggaaacgat gattcaaacc aatgttttgg
     2281 gtttgacgtt cctgacgcgc aaaattttgc cgcaaatggt ggaacgcggc ggcggttatg
     2341 tgatgaattt gggttcgatt gcaggcaatt atgcttatgc cggcagcaac gtttacgggg
     2401 cgaccaaggc gtttgtgcgc cagttcagcc tgaatttgcg cgcggagttg gcggataaga
     2461 acatccgcgt taccaatatc gagccgggtt tgtgcggcaa tacggagttt tccaatgtgc
     2521 gcttcaaagg cgatgacgag agggcggcgg gcgtgtatga gggtgtggaa tttatccgcc
     2581 ccgaagatat tgcggaaacc gcattgtggc tgtaccagcg gccggcgcat atgaatgtga
     2641 acacgattga aattatgccc gtggcgcaga cttttgcagg aatgaaagtg ataaaaaaag
     2701 ccgtgcccga agtgcgggaa gactttgaaa aacagagtat gtcgctgttt tcccgcatca
     2761 ggtcctggtt caaatgatgc aaaatgccgt ctgaagacag tttcagacgg catttttacg
     2821 ggtattttta cggagtaggc aataagcccg ccaatttggg gttgccttct ttcggaatcg
     2881 ggcgcggatt gccttccgca tcgatggcaa cataagtgaa cacggcttcg gttacgaggt
     2941 agcggtcttc ggtaacgcaa tcgttcatca aagttttcac ccagacgtcg actttaagct
     3001 ggagggaagt gttgcccacg cggacgcaat gcccgtagca gcagacgacg ttgccgacct
     3061 tgaccgggcg gatgaagttc atttcctgaa cggcgacggt aacgatgcgt ccccgcgcga
     3121 tttccgccgc caatatgccg ccgcccaaat ccatctgcga cataatccag ccgccgaaaa
     3181 tgtcttggtt gggattggta tcgcgcggca tagcgacggt acgcaggagc agttcgcctt
     3241 gagggcgttg gcggttgcct tcttcgtgct gcataaagtt tccttgtttt attgaaatat
     3301 aaatcgaacc tgcacccctg cccgaaacgg gaagtcggga agtgcgtagt ttaacccatt
     3361 tgagacatac aagggcgggc gtgggacaga ttcgcaaggc gtattgtagg gcggggctgt
     3421 agggtggact tcagtccgcc atttccatca atccaacatt tctaccgttt tcattgagtc
     3481 catcgaatcc gcccctttcg acgacccagc cc
//
LOCUS       DAWGNT010000177         3430 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.177, whole genome shotgun sequence.
ACCESSION   DAWGNT010000177 DAWGNT010000000
VERSION     DAWGNT010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3430
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.177"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            43..711
                     /locus_tag="WHR98_001801"
     CDS             43..711
                     /locus_tag="WHR98_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002261794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tfp pilus assembly protein FimT/FimU"
                     /protein_id="HEZ2308440.1"
                     /translation="MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASH
                     AERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPNNKCDSGKKGQGMLAFGDKNGNK
                     IYDNDTADVLLRSVVLNDDINNKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTK
                     DQHLTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTV
                     CQYK"
     gene            741..1361
                     /gene="pilV"
                     /locus_tag="WHR98_001802"
     CDS             741..1361
                     /gene="pilV"
                     /locus_tag="WHR98_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus modification protein PilV"
                     /protein_id="HEZ2308441.1"
                     /translation="MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVA
                     SVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKNYNLYMGNHTLPHTLSAVDGDFA
                     IDAMKTKGQLAEAQLKRFSYELKNALPDAAAIHYTVCKDSSGNAPTLSGSTFSQNCDG
                     SANGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE"
     gene            1358..2323
                     /locus_tag="WHR98_001803"
     CDS             1358..2323
                     /locus_tag="WHR98_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilW family protein"
                     /protein_id="HEZ2308442.1"
                     /translation="MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFT
                     SRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFGCFNMSEHTEKNVVYDVAQKNRL
                     FSLKGSSANKLIPNGTDNKLIPITESLDIGYQGFTQRLNALVFQYGIDDLDASAETVV
                     VSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQRYVVNAYAVGRIAGEEGLF
                     RFQLDDKGKWGNPQLLVKKINKMDIRYIYVSDCPEDDDAGKEEKFKYTGTFDSSTNAV
                     TPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL"
     gene            2302..2901
                     /locus_tag="WHR98_001804"
     CDS             2302..2901
                     /locus_tag="WHR98_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein"
                     /protein_id="HEZ2308443.1"
                     /translation="MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNT
                     EQRISANESDRKLALSLAEAALREGELQVLDLEYDTDSKVTFSENCGEGLCTAVNVRT
                     NKNNDNEEAFDNIVVQGKPTVEAVKRSCTANSTDLCIDKKGMEYKKGKGSVSKPPRYI
                     IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE"
     gene            2906..3379
                     /locus_tag="WHR98_001805"
     CDS             2906..3379
                     /locus_tag="WHR98_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEZ2308444.1"
                     /translation="MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTE
                     MVGINNTVKQIILKNPQDSNDILNIKLTKFVSGYKMNPKIAEKYNVSVHFVNKEKPRA
                     YSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAEAYSETLSADVGCEAFSNRKK"
BASE COUNT          994 a          666 c          860 g          910 t
ORIGIN      
        1 aatttaatcc actatacatt accagttaac gttctattgc ttatgtgtac acgaaaacaa
       61 caaggtttca cgctaacaga gctgctcatc gtgatggtca ttgcagccat tatggcgatg
      121 atagccctcc ccaatatgag ccaatggatt gcatcccgcc gcattgccag tcacgcggag
      181 cggattgcca accttttgcg tttctccagg ggcgaagccg tccggctcaa tctccctgtc
      241 tatatctgtc ctgttcaagt taaaaaagac ggtacgccca acaataaatg tgactccggc
      301 aagaaggggc agggaatgtt ggcttttggc gataagaatg gcaataagat atatgacaat
      361 gatacggcgg atgttcttct ccgcagtgtg gtattgaatg atgatatcaa taataagcgg
      421 attaattatg ccttcaacca tatcgctttc ggtcagactc agccgaccgc tgaccgtgta
      481 gtttggacat tcaatcaaaa cgggacgttc ggttatacga aagaccagca tcttacaagc
      541 aaatccagct ttttttattc cgacggttat atccaaatcg tgctgacaga tgcgagagca
      601 gtttcagatg ccgataagaa attccgttcg gcggtggttt tgattaacag cagcggcagg
      661 gttgaggttt gtcctagaaa cgataggcgt accgtatgcc aatataaatg attgttttag
      721 tcggtttggg aaataaaaaa atgaagaata atgattgctt ccgcctgaaa aacccccagt
      781 ccggtatggc gctgatagaa gtcttggtcg ctatgctcgt tctgaccatc ggtattttgg
      841 cactattgtc tgttcagttg cggacagtcg cttccgtcag ggaggcagag acgcaaacca
      901 tcgtcagcca aatcacgcaa aacctgatgg aaggaatgtt gatgaatccg accattgatt
      961 cggacagcaa caagaaaaac tataatcttt acatgggaaa ccatacacta ccgcatacac
     1021 tatcagctgt ggatggcgat tttgcgattg atgccatgaa aactaagggg caattggcag
     1081 aggcacaatt gaagagattt agttatgagc tgaaaaatgc cttgccggat gcggcagcca
     1141 tccattacac cgtctgcaag gattcgtcgg gtaatgcgcc gacattgtcc ggcagtactt
     1201 tttctcaaaa ttgcgatggt agtgcaaatg gggatacttt gattaaagta ttgtgggtaa
     1261 atgattcggc aggggattcg gatatttccc gtacgaatct tgaggtgagc ggcgacaata
     1321 tcgtatatac ttatcaggca agggtcggag gtcgggaatg agacgtaaaa tgctaaacgt
     1381 accaaaaggc agttatgatg gtatgaaggg ttttaccatt attgaatttt tggttgcggg
     1441 catgctcagt atgattgtcc tgatggcggt cggatcgagt tacttcacgt cccggaaatt
     1501 aaatgatgcg gcaaacgagc gtcttgctat tcaacaggat ttgcggaatg cggcaacatt
     1561 gattgtccgc gatgcaagaa tggcggggag cttcggttgt ttcaatatgt ctgagcatac
     1621 cgaaaagaat gttgtttacg atgtggcgca aaaaaaccgt cttttttcct taaaagggag
     1681 cagtgcaaat aaacttatcc ccaacggtac agataataaa cttatcccca taacggaatc
     1741 tttagatatc ggatatcagg gttttaccca gcgccttaac gcattggttt tccaatacgg
     1801 tatcgatgat cttgatgcga gtgctgagac tgttgtagtc agcagctgtt ccaaaatagc
     1861 aaaaccgggt aagaaaatat ctaccttgca agaagcaaag agtgcattac agattactaa
     1921 tgatgataaa caaaatggaa atatcacccg tcaaaggtat gtggtcaatg cctatgcggt
     1981 cggcaggatt gccggtgagg aaggtttgtt ccgcttccaa ttggatgata agggcaagtg
     2041 gggtaatcct cagttgttgg ttaaaaagat taataaaatg gatatacggt atatttatgt
     2101 ttccgattgt cctgaagatg acgatgccgg caaagaggaa aaattcaaat atacgggtac
     2161 attcgacagc tccacaaatg ctgttacgcc cgccggggtg gaggttttat tgagtagcgg
     2221 tactgatacc aagattgccg cttcttcaga caatcatatt tatgcttacc gtatcgatgc
     2281 gacaatacgc gggggaaatg tatgcgcaaa cagaacactt tgacgggaat cccgacttct
     2341 gacggacaga gggggtttgc actgtttatc gtgctgatgg tgatgatcgt cgtggctttt
     2401 ttggttgtaa ctgccgcgca gtcttacaat accgagcagc ggatcagtgc caacgaatca
     2461 gacaggaaat tggctttgtc tttggccgag gcggctttgc gggaaggcga acttcaggtt
     2521 ttggatttgg aatatgatac ggacagtaag gttacattta gcgaaaactg tggagaaggt
     2581 ctgtgtaccg cagtgaatgt gcggacaaat aaaaataatg ataatgaaga ggcttttgac
     2641 aatatcgtgg tgcaaggcaa gcccaccgtt gaggcggtga agcgttcttg cactgcaaat
     2701 tctaccgacc tgtgcattga caagaaaggg atggaatata agaaaggcaa gggaagtgtc
     2761 agcaaaccac cacgctatat tatcgaatat ttgggcgtga agaacggaga aaatgtttat
     2821 cgggttactg ccaaggcttg gggtaagaat gccaataccg tggtcgtcct tcaatcttat
     2881 gtaagcaata atgatgagta ataaaatgga acaaaaaggg tttacattga ttgagatgat
     2941 gatagtcgtc gcgatactcg gcattatcag cgtcattgcc ataccttctt atcaaagtta
     3001 tattgaaaaa ggctatcagt cccagcttta tacggagatg gtcggtatca acaatactgt
     3061 caaacagatt attttgaaaa atccacagga tagtaatgat atcctcaata taaaactgac
     3121 aaagtttgtc tcaggctata agatgaatcc gaaaattgcc gaaaaatata atgtttcggt
     3181 gcattttgtc aataaggaaa aaccaagggc atacagcttg gtcggcgttc caaagacggg
     3241 gacgggttat actttgtcgg tatggatgaa cagcgtgggc gacggataca aatgccgtga
     3301 tgccgcttct gccgaagcct attcggagac cttgtccgca gatgtcggct gtgaagcctt
     3361 ctctaatcgt aaaaaatagg gctgttttgc cgatgccgtc tgaaaatcaa tgttcagacg
     3421 gcatttttat
//
LOCUS       DAWGNT010000178         3414 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.178, whole genome shotgun sequence.
ACCESSION   DAWGNT010000178 DAWGNT010000000
VERSION     DAWGNT010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3414
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.178"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..219
                     /gene="rdgC"
                     /locus_tag="WHR98_001806"
     CDS             <1..219
                     /gene="rdgC"
                     /locus_tag="WHR98_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HEZ2308445.1"
                     /translation="TQLGLVWREQIAFILTQDFTLKRIQYLDVLQEEAESNGDDAAGL
                     AFASQILMAESVSTMLEELVSYLGGWQD"
     gene            271..687
                     /locus_tag="WHR98_001807"
                     /pseudo
     CDS             271..687
                     /locus_tag="WHR98_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449185.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            753..1319
                     /locus_tag="WHR98_001808"
     CDS             753..1319
                     /locus_tag="WHR98_001808"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003823864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEZ2308446.1"
                     /translation="MSIKSDKWIRRMSEEFGMIDPFEPNQIKEADGKRIISYGTSSYG
                     YDIRCANEFKIFTNINSTIVDPKNFDPKNFVTVEDDCCIIPPNSFALARTVEYFRIPR
                     NVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGVAQVLFF
                     ESDEICETSYKDRNGKYMGQTGVTLPKA"
     gene            complement(1383..2087)
                     /locus_tag="WHR98_001809"
     CDS             complement(1383..2087)
                     /locus_tag="WHR98_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248833.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEZ2308447.1"
                     /translation="MLRSILAASLLAVSFPTAAEALNYNIVEFSESAGVEAVQDTMSA
                     RFQVTAEGRDKNAVNAEFVKKFNNFTRKSKNGSFKTELVSRSAMPRYQYTNGRRIQTG
                     WEERAEFKVEGRDFDALNRFIADVQADAALEYTDFHVSRERRNEVIDQVSKDAVLRFK
                     ARAEKLAGVLGASSYKIVKLNLGHIGSHIAGGGAAQAKMLRAMPMAASVNMEGADSAA
                     PGVEEISISVNGTVQF"
     gene            2233..3414
                     /locus_tag="WHR98_001810"
                     /pseudo
     CDS             2233..3414
                     /locus_tag="WHR98_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271049.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
BASE COUNT          891 a         1025 c          753 g          745 t
ORIGIN      
        1 acccagctcg gtttggtttg gcgcgaacaa atcgccttta tcctcactca agactttaca
       61 ctcaagcgca tccaatacct cgacgtattg caggaagaag ccgaaagcaa cggcgacgat
      121 gccgccggtc tcgccttcgc ctcgcaaatc ctgatggctg aatccgtcag caccatgttg
      181 gaagagctgg tttcctattt gggcggctgg caagattgat ttttcagacg gcttttatac
      241 cgtcagccaa aatccaatgg aataaccctt atgcttaaac atctcgcatt cctactgccc
      301 gccatgatgt tcgccccccc ccgccgcgtc cgccgttctg acttcctatc aagaacccgg
      361 ctgcacctac gaaggcgatg tcggcaaaga cggtaaaccc gccggcaaag gcacatgcgc
      421 tgccaagacg ggcgcaacta taccggttcg tttaaaaacg gcaaattcga cggacaaggc
      481 gtttataccg ttgccgccaa ccgcgaaata tttatcgaac cgttcaattc cgacagtacc
      541 aaattccgca acatggtact ctcgggcaca ttcaaaaaag gcttggcaca cggcagattt
      601 accgtctcgc aaaacggcga aaccctcttc attatgaaat gcgaaaacgg catgattaaa
      661 gaagtgaagc tgcccaaaaa caaataagcc ccgttttcag acggcatccc tgaatgcttt
      721 gtccgaacac tgcaagaaac aaggaaaaca ttatgagcat caagtccgac aaatggatac
      781 gccgaatgag cgaagaattc ggcatgatcg accctttcga gccgaaccaa atcaaagaag
      841 ccgacggcaa acgcatcatc tcctacggta cgtccagcta cggctacgac atccgctgcg
      901 caaacgaatt taaaatcttc accaacatca acagcaccat cgtcgatccc aaaaacttcg
      961 acccgaaaaa cttcgttacc gttgaagacg actgctgcat catcccgccc aattccttcg
     1021 cactggcgcg cacggtcgaa tatttccgca tcccgcgcaa cgtcctgacc gtctgcttgg
     1081 gcaaatccac ctacgcccgc tgcggcatta tcgtcaacgt taccccgttc gaaccggaat
     1141 gggaaggcta cgttaccctc gaattttcca acaccacccc cctgcccgcc aaaatctacg
     1201 caggcgaagg cgtggcgcaa gtcctcttct tcgagagcga cgaaatctgc gaaacctcat
     1261 acaaagaccg caacggcaaa tatatggggc aaaccggcgt taccctgccc aaagcctgaa
     1321 atataaatgc cgtctgaacc cttatcgtcg ggtttcagac ggcatttgcc gttcacctca
     1381 aatcagaact gaaccgtccc attgacgctg atgctgattt cctccacacc aggcgcggcg
     1441 gaatccgcac cctccatatt gacgcttgcc gccatcggca tggcacgaag catttttgcc
     1501 tgagcagctc cccctcccgc gatatggctg ccgatgtgtc ccaaattcaa tttgacgatt
     1561 ttataactgg acgcacccaa aacgcccgcc aacttttcgg cacgcgcctt gaaacgcaaa
     1621 acggcatcct tgctgacctg atcgatgacc tcgttgcggc gttcgcgcga cacatggaaa
     1681 tccgtatatt ccaacgcggc atctgcctga acatcggcaa taaaacggtt caacgcatca
     1741 aaatccctac cctcgacctt aaattccgca cgctcctccc agcctgtttg aatgcgtctg
     1801 ccgttggtgt actggtagcg cggcatcgca ctgcgcgata ccaattcggt tttaaagcta
     1861 ccattttttg attttctggt gaaattgttg aattttttaa caaactcggc attgacggca
     1921 tttttgtccc gtccttccgc cgtcacttgg aaacgtgcgg acattgtatc ctgaaccgcc
     1981 tcgacacccg ccgattcaga aaattcgaca atattgtaat tcaatgcttc agccgccgtc
     2041 ggaaaagata ccgccagcag ggaagccgcc aaaatagaac gcaacatatc cgtatcctta
     2101 cttataaaac cgccaatcta gcatatcggc gcgctaaatt gcattagcgt aaggcaacaa
     2161 tttaaatatt cggtctgcgt ctgtcttata ataaccgcct ttccgatacg gaatcccact
     2221 atgcccgaac ccttgcacgt cctcgtcatc ccctcatggt atccgcaatc cgaacaggat
     2281 gtggacggga tttttttcaa aatcaggcac tggcattgca gaggaaaggc atcaaaaccg
     2341 ccgtgcttgc accgatgttc cgctacttgc ggaaagaaac agcaagcatc ctgaccggcc
     2401 ttacggtttt gcaaaatatc ggcaaagcgg tttggacatc tatgcatggc acggcatata
     2461 tttcttcccc cgctttccgt tcatcgacat cgactgcatc cgctgggtgt gtgcgggttt
     2521 gaaagctttc aaacactaca tccgcgaaaa cgggctgccc gacctgattc acgcccaccg
     2581 catgaactat gccggcatac tcgcccaaaa aatttcccaa aaatacggca tcccctatgt
     2641 cgtcacggaa cacagcagca ccatcacgcg cggtctgatc cgtccccacc aatggcagcc
     2701 gatggaaaaa gcagcggcgc acgcctccgc actgctcgct gtcagccgcc atttcgcaca
     2761 cgtcctgcaa cacaaatacg gctgcgaatg gcagtacctc cccaacatac tgggcggaat
     2821 attcaaccga ccgtttgaac aaagagaaaa aaacaacaaa ccgcatttcg tgttctgcac
     2881 cgtctcgcac cttcgccgtc tcaaaggaca cgatgtcctg ctcactgcct ttgcccgggc
     2941 gttggcacaa tgcccgcaac tgcgtctaaa catcggcggc agcggacagg aagaacagcg
     3001 gctgaaacag caggcggcag acttgggcat cacccatgcc gttacatttt tgggcgcatt
     3061 gcagcccgaa gcagtcttgg atttgatgag gaacagcgac gcattcgtcc ttgccagccg
     3121 cacagaaacc ttcggcgtgg tctatatcga agcactgtcc caaggattgc ccgtcattgc
     3181 aacacgctgc ggcggtgcgg aatctattgt ttcagacggc aacggatatt tggttcctgt
     3241 tgacgacgac gatgcccttg ccgacgcact catcaaaatg tatgaacacc actctgattt
     3301 tgaacctgcc cgacttaggg aaaactgtct gaacgaattt ggcgaaaatg ccgttatagg
     3361 caggttgatc ggcattttcc gacaggcaat cgcagaatac ggtaagaaaa tacc
//
LOCUS       DAWGNT010000179         3384 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.179, whole genome shotgun sequence.
ACCESSION   DAWGNT010000179 DAWGNT010000000
VERSION     DAWGNT010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3384
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.179"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(214..1278)
                     /locus_tag="WHR98_001811"
     CDS             complement(214..1278)
                     /locus_tag="WHR98_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEZ2308448.1"
                     /translation="MEKEFRILNIVSAKIWGGGEQYVYDVSKALGLRGCTMFTAVNKN
                     NELMHRRFSEVSSVFTTRLHTLNGLFSLYALTRFIRKNRISHLMIHTGKIAALSILLK
                     KLTGVRLIFVKHNVVANKTDFYHRLIQKNTDRFICVSRLVYDVQTADNPFKEKYRIVH
                     NGIDTGRFPPSQEKPDSRFFTVAYAGRISPEKGLENLIEACVILHRKYPQIRLKLAGD
                     GHPDYMCRLKRDVSASGAEPFVSFEGFTEKLASFYRQSDVVVLPSLVPEAFGLSLCEA
                     MYCRTAVISNTLGAQKEIIEHHQSGILLDRLTPESLADEIERLVLNPETKNALATAGH
                     QCVANRFTINHTADKLLDAI"
     gene            complement(1279..2037)
                     /locus_tag="WHR98_001812"
     CDS             complement(1279..2037)
                     /locus_tag="WHR98_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEZ2308449.1"
                     /translation="MKKVSVLIVAKNEANHIRECIESCRFDKEVIVIDDHSTDNTAEI
                     AEGLGAKVFRRHLNGDFGAQKTFAIEQAGGEWVFLIDADERCTPELSDEISKIVQTGD
                     YAAYFVERRNLFPNHPATHGAMRPDSVCRLMPKKDSSVQGKVHETVQTPYPKRRLKHF
                     MYHYTYDNWEQYFNKFNKYTSISAEKYREQGKPVRFVRDIILRPIWGFFKIYILNKGF
                     LDGKMGWIMSVNHSYYTMIKYVKLYYLYKSGGKF"
     gene            complement(2112..2187)
                     /locus_tag="WHR98_001813"
     tRNA            complement(2112..2187)
                     /locus_tag="WHR98_001813"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2152..2154),aa:Ile,seq:cat)
     gene            complement(2241..>3384)
                     /locus_tag="WHR98_001814"
     CDS             complement(2241..>3384)
                     /locus_tag="WHR98_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002247614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HEZ2308450.1"
                     /translation="NIVDWHERFPELEAQLGAPIEDYAPPKHWTRKQLRSMGRVSYLC
                     VDAAEQALTDAGLLGDESITDGRMGVACGSSSGSTKDIGDVGELLLTGTSRNFSANTY
                     VRMMPHTAAANIGIFFGLKGRIIPTSSACSSGSQGIGYAYEAIKYGLTDMMLAGGGEE
                     FFPSEVYVFDSLYAASRRNGEPEKTPRPYDANRDGLVIGEGAGIFVLEELEHAKRRGA
                     IIYAELVGYGANSDAYHISTPRPDAQGAILAFQTALQHANLAPEDIGWINLHGTGTHH
                     NDSMESRAVAAVFGNNTPCTSTKPQTGHTLGAAGAIEAAFAWGFADRQSNPEGKLPPQ
                     LWDGQNDPDLPAINLTGSGSRWETEKHIAASSSFAFGGSNCVLIIG"
BASE COUNT          757 a          827 c          905 g          895 t
ORIGIN      
        1 tctactatac attgtaacaa agcacttgat gcggcagcac aagccgggga agacgctgca
       61 aaactttgcc aataggctgc gtaatatcgg gggatattgg gattttctta ttttgaagga
      121 tggattcggg gtgtttcttt ccaatgaacg aatataattt ggcggtttgt tgcatcaaag
      181 gctttcagac ggcatatgcc gtctgaaagc agtttatatt gcatccaata atttgtcggc
      241 ggtatggttg atggtaaaac ggttggcgac gcattgatgt cctgccgttg ccagtgcgtt
      301 tttcgtttca gggttcaaga cgaggcgttc gatttcgtcc gccaaagatt caggtgtcag
      361 cctgtccagc agaatccccg attgatgatg ttcgataatt tccttttgcg cccccaaagt
      421 attggaaatc accgccgttc ggcagtacat cgcctcgcat aatgacaaac cgaatgcctc
      481 cgggacgagg ctgggcaaaa ccacgacatc gctttggcgg taaaacgaag caagtttttc
      541 ggtaaaccct tcaaaagaaa caaatggttc tgctcctgaa gcagatacgt cccgcttcag
      601 gcggcacata taatccggat gtccgtcccc tgccaatttg agcctgattt gaggatattt
      661 ccgatgcagt atcacacagg cttcaatcag gttttccaat cctttttctg gactgatcct
      721 gccggcgtag gcgacggtaa aaaaacggct gtcgggtttt tcttgagagg gagggaaacg
      781 gccggtatcg ataccgttat gaacaatccg gtatttttct ttaaagggat tgtcggcggt
      841 ttgcacatcg taaaccagac gggaaacgca aataaagcgg tcggtgtttt tctgtatcag
      901 gcggtgataa aaatcggttt tgttggcgac gacattatgt ttgacaaata tcaggcgcac
      961 tccggtcagt tttttcaaaa gtatggataa ggcggcaatt ttgccggtgt gtatcatcag
     1021 gtgggaaatg cggtttttcc ggataaagcg ggtaagtgcg tagagcgaaa acagcccgtt
     1081 gagcgtgtga aggcgtgtcg tgaaaacgga agaaacttcg gaaaagcgtc tgtgcatcaa
     1141 ctcattattt ttattgacgg cggtaaacat cgtgcagccc cgcagtccca atgcttttga
     1201 aacatcatag acatattgtt cgcccccgcc ccaaatcttg gccgatacga tatttaatat
     1261 cctgaattct ttttccattt aaaattttcc gccggatttg tacagataat atagtttgac
     1321 atatttaatc atcgtgtaat agctgtggtt gacggacata atccaaccca ttttcccatc
     1381 gagaaaccct ttgttcagga tataaatttt gaaaaaaccc caaatcggac ggaggataat
     1441 gtccctaacg aaacgcacgg gctttccctg ctctcggtat ttctcggctg aaatggaagt
     1501 atatttgttg aatttgttga aatattgttc ccagttgtcg tatgtgtaat ggtacataaa
     1561 atgcttcaga cggcgtttgg ggtagggggt ttgtacggtt tcgtgtactt tgccttgcac
     1621 cgaactgtct tttttcggca tcagacggca tacgctgtcg ggacgcatcg cgccgtgtgt
     1681 ggcgggatgg ttggggaaaa ggttgcggcg ttcgacaaaa taggcggcat aatcgccggt
     1741 ttggacaatt tttgagattt catcagatag ttccggcgtg cagcgttcgt ctgcatcaat
     1801 caggaaaacc cattctccgc ctgcctgttc gatggcaaat gttttttgcg ctccgaaatc
     1861 cccgttcaaa tgccgtctga agacttttgc acccaaaccc tcggcaattt cggcagtatt
     1921 gtcggtgctg tggtcgtcaa taacgataac ttctttatcg aaacggcaac tttcaataca
     1981 ttcccgaatg tggtttgctt cgtttttggc aacaatcaat acgctgactt ttttcattat
     2041 caaggtttct caaagcattt tggtttcaca gggcggcaaa aaagcccaaa catacgtccg
     2101 ggcttgggaa ttggtgggtc cggtggggtt cgaacccacg accaagggat tatgagtccc
     2161 ctgctctaac ccctgagcta cagacccgtc aagagtaggc gcgtattgta tagcatagcg
     2221 gtgggattga caaacttatt tcatccgatg attaagacgc agttgcttcc tccgaaggca
     2281 aacgacgagc tggcggcaat gtgtttttcg gtttcccagc ggctgccgct gccggtcagg
     2341 ttgatggcgg gcaggtcggg gtcgttctgc ccgtcccaaa gctggggcgg aagttttcct
     2401 tcgggattgc tttgccggtc ggcaaagccc cacgcgaacg cggcttcgat tgcgcccgcc
     2461 gcacccagcg tgtgtccggt ttgcggcttg gtggacgtgc agggcgtatt gttgccgaaa
     2521 accgctgcaa cggcgcggct ttccatactg tcgttgtggt gcgtcccggt gccgtgcagg
     2581 ttaatccagc cgatgtcttc gggcgcaagg tttgcgtgtt gcaatgccgt ctgaaaggcg
     2641 aggattgcgc cttgagcgtc ggggcgcggc gtggaaatat ggtaggcatc gctgttggct
     2701 ccgtagccga cgagttcggc gtaaattatc gcaccgcgcc gtttggcgtg ttccaattct
     2761 tccagcacga aaatccccgc gccttcgccg atgaccagcc cgtcgcggtt cgcgtcgtat
     2821 gggcgcgggg ttttttccgg ttcgccgttg cggcggctgg cggcataaag cgagtcgaaa
     2881 acatacactt cggacgggaa aaattcttcg cctccgcccg ccagcatcat atcggtcaga
     2941 ccgtatttga tggcttcgta ggcataacct atgccttggc tgccggacga acacgcgctc
     3001 gatgtcggga tgatgcgtcc tttcagcccg aaaaagatgc cgatattggc ggcggcggtg
     3061 tgcggcatca tacgcacata ggtgttggca ctgaagttgc gcgacgtgcc ggtcagcaac
     3121 aattcgccca catcgccgat gtctttggtg ctgccgctgg aagagccgca ggcaacgccc
     3181 atccgtccgt cggtaatgct ttcgtccccg agcaaaccgg catccgtcaa agcctgctcc
     3241 gccgcatcga cgcacaaata cgacacacgc cccatacttc tgagctgctt gcgcgtccaa
     3301 tgtttcggcg gcgcgtaatc ctcaatcggc gcacccagtt gcgcttccaa ttcggggaaa
     3361 cgttcgtgcc aatccactat attt
//
LOCUS       DAWGNT010000180         3320 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.180, whole genome shotgun sequence.
ACCESSION   DAWGNT010000180 DAWGNT010000000
VERSION     DAWGNT010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.180"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            22..159
                     /locus_tag="WHR98_001815"
     CDS             22..159
                     /locus_tag="WHR98_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003675827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308451.1"
                     /translation="MPSEHPSDGIGIETYRPFCDIIQTICQNRQTLCRLKHACRTLSA
                     P"
     gene            117..1172
                     /locus_tag="WHR98_001816"
     CDS             117..1172
                     /locus_tag="WHR98_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEZ2308452.1"
                     /translation="MPSETRLPNFIRTLIFALSFIFLNACSEQTAQTVTLQGETMGTT
                     YTVKYLSNNRDKLPSPAEIQKRIDDALKEVNRQMSTYQPDSEISRFNQHTAGKPLRIS
                     SDFAYVTAEAVRLNRLTHGALDVTVGPLVNLWGFGPDKSVTREPSPEQIKQAASYTGI
                     DKIILKQGKDYASLSKTHPKAYLDLSSIAKGFGVDKVAGELEKYGIQNYLVEIGGELH
                     GKGKNARGEPWRIGIEQPNIIQGGNTQIIVPLNNRSLATSGDYRIFHVDKSGKRLSHI
                     INPNNKRPISHNLASISVVADSAMTADGLSTGLFVLGETEALKLAEREKLAVFLIVRD
                     TGGYRTAMSSEFEKLLR"
     gene            1198..1413
                     /gene="nqrM"
                     /locus_tag="WHR98_001817"
     CDS             1198..1413
                     /gene="nqrM"
                     /locus_tag="WHR98_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HEZ2308453.1"
                     /translation="MKTLLLTFGIFLTVIIGMAVGYIFSKRTIKGSCGGITALGMKKM
                     CDCDTPCDTLQKKLDEEKQAGGIRVDR"
     gene            complement(1537..2115)
                     /gene="grpE"
                     /locus_tag="WHR98_001818"
     CDS             complement(1537..2115)
                     /gene="grpE"
                     /locus_tag="WHR98_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEZ2308454.1"
                     /translation="MSEQTQQQNSEEAVENVEAVETVETVGNADGVQEQAAAEPAYED
                     LQARIAELEAQLKDEQLRALANEQNLRRRHQQEIADTHKFAGQKFAVEMLPVKDYLEM
                     ALLDQSGNFDALKMGVQMTLNELQKAFDATQIKEINPKAGDKLDPNIHQAMQAVASEQ
                     EPNTVVGVMKKGYTLSDRVLRPAMVTVAQKEA"
     gene            2299..3117
                     /gene="cysE"
                     /locus_tag="WHR98_001819"
     CDS             2299..3117
                     /gene="cysE"
                     /locus_tag="WHR98_001819"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEZ2308455.1"
                     /translation="MKKDHLNTTGFDLWHTIREETAAAVSAEPMLASFLHQTVLRHES
                     LGSVLAYHLSSKLGSPIMDVRALFEIYQQALGSDTQIGKCVEADLKAIYERDPACDEY
                     SLPLLYFKGFHAIQAHRINHRLYLDGRKTLAYFLQNRMSEVFGVDIHPAARFGYGLML
                     DHATGFVAGETAVLGNNISILHGVTLGGSGKEGGDRHPKIGDGVMIGANASILGNIRI
                     GSNAKIGAGSVVVSDVPPSITVVGVPAKPVARSLKTPSADMDQNIQFAEIDFMI"
BASE COUNT          850 a         1007 c          746 g          717 t
ORIGIN      
        1 ccgccaccta aacgacgggc gatgccgtcc gaacaccctt cagacggcat cggcatagaa
       61 acataccggc cgttttgcga tataattcaa accatttgcc aaaaccgtca aacactatgc
      121 cgtctgaaac acgcctgccg aactttatcc gcaccttgat atttgccctg agttttatct
      181 tcctgaacgc ctgttcggaa caaaccgcgc aaaccgttac cctgcaaggt gaaacgatgg
      241 gcacgaccta taccgtcaaa tacctttcaa acaatcggga caaactcccc tcccctgccg
      301 aaatacaaaa gcgcatcgat gacgcgctta aagaagtcaa ccggcagatg tccacctatc
      361 agcccgactc cgaaatcagc cggttcaacc aacacacagc cggcaagccc ctccgcattt
      421 caagcgactt cgcatacgtt actgccgaag ccgtccgcct aaaccgcctg acacacggcg
      481 cgctggacgt aaccgtcggc cctttggtca acctttgggg attcggcccc gacaaatccg
      541 ttacccgtga accgtcgccg gaacaaatca aacaagcagc atcttatacg ggcatagaca
      601 aaatcatttt gaaacaaggc aaagattacg cttccttgag caaaacccac cccaaggcct
      661 atttggattt atcttcgatt gccaaaggct tcggcgttga taaagttgcg ggcgaactgg
      721 aaaaatacgg cattcaaaat tatctggtcg aaatcggcgg cgagttgcac ggcaaaggca
      781 aaaacgcgcg cggcgaaccg tggcgcatcg gtatcgagca acccaatatc atccaaggcg
      841 gcaatacgca gattatcgtc ccgctgaaca accgttcgct tgccacttcc ggcgattacc
      901 gtattttcca cgtcgataaa agcggcaaac gcctctccca tatcattaat ccgaacaaca
      961 aacgacccat cagccacaac ctcgcctcca tcagcgtggt cgcagacagt gcgatgacgg
     1021 cggacggctt gtccacagga ttattcgtat tgggcgaaac cgaagcctta aagctggcag
     1081 agcgcgaaaa actcgctgtt ttcctgattg tcagggatac aggcggctac cgcaccgcca
     1141 tgtcttccga atttgaaaaa ctgctccgct aaacatacaa accgattagg aaacaccatg
     1201 aaaaccctgc tcctcacctt cggcatcttc ctgaccgtca tcatcggtat ggcggtcggc
     1261 tatatcttct ccaaacgcac catcaaaggc agttgcggcg gcattaccgc cttgggtatg
     1321 aaaaaaatgt gcgactgcga cacgccttgc gacaccctgc aaaagaaact ggatgaagaa
     1381 aaacaggcag gcggcatacg ggttgaccgt taacaccgaa acaaaatgcc gtctgaagcc
     1441 cgacaggcgg gttcagacgg cattgccgct ttacttcgat cggtttatac gcaaaacgcg
     1501 cttcaggaaa taaatcagat tattccccag acgccttcag gcttccttct gtgccaccgt
     1561 aaccatagcc gggcgcaaca cgcggtcgga cagcgtataa cccttcttca tcacgcccac
     1621 cacggtattg ggttcctgtt cgcttgccac cgcctgcatc gcctgatgga tattcggatc
     1681 gagcttatcg cccgctttag gattgatttc cttgatttgc gtagcatcaa atgctttctg
     1741 caactcgttc aaagtcatct gcacgcccat tttcagcgca tcgaaattgc cgctctgatc
     1801 caaaagcgcc atttccagat aatccttgac cggcagcatt tccacggcaa acttctgtcc
     1861 ggcgaacttg tgcgtatccg caatttcctg ctggtggcgg cggcgcaggt tttgctcgtt
     1921 tgccaaagcg cgcagctgct cgtctttcaa ctgcgcttcc agctcggcaa tccgcgcctg
     1981 caaatcctca taagccggct ctgcggcagc ctgttcctgc acaccgtccg catttcctac
     2041 tgtctcgacg gtttccaccg cctccacatt ttcaaccgct tcttcactgt tttgctgctg
     2101 tgtctgttcg ctcatatcgt atcccttaaa acaaattgga aatcaaaatc cagttattac
     2161 ccgcgcaaga taaggacatt ttcaagaaac ttcaagcaaa agcagagaat ttcaaattca
     2221 ttttcaaatc ccctaccgaa aaaataatat agacggtaag atactgccga ccatatcgat
     2281 tttcaaacgt catcactcat gaaaaaagac catttaaaca caaccggttt cgacctctgg
     2341 cacaccatcc gcgaagaaac cgcggccgcg gtctccgccg aaccgatgct ggcaagtttt
     2401 ttgcaccaaa ccgtgttgcg ccacgagtcc ctcggctccg tccttgccta ccacctttcc
     2461 agcaaactcg gcagcccgat tatggacgtg cgcgcgctgt ttgaaatcta ccagcaggcg
     2521 ttgggcagcg acacccaaat cggcaaatgc gtcgaagcag acttaaaagc catctacgaa
     2581 cgcgatcccg cctgcgacga atattcgctg ccgcttttat atttcaaagg cttccacgcg
     2641 attcaggcac accgcatcaa ccatcggctg tatctcgacg ggcgcaaaac gctggcgtat
     2701 ttcctgcaaa accgtatgtc cgaagtattc ggcgtggaca tccatcccgc cgcccgtttc
     2761 ggatacgggc tgatgctcga ccacgccacc ggctttgttg ccggcgaaac cgccgtgttg
     2821 ggcaacaata tttcgatttt gcacggcgta acgctcggcg gttcgggcaa agaaggcggc
     2881 gaccgccacc ctaaaatcgg cgacggcgtg atgatcggcg caaacgcctc gatattgggc
     2941 aatatccgca tcggcagcaa tgccaaaatc ggggcgggca gcgtcgtggt ttcagacgtg
     3001 ccgccgtcca tcacggttgt cggcgtaccc gccaaacccg tggcgcgatc gctcaaaaca
     3061 ccgtcggcgg atatggatca aaatatccag tttgccgaaa tcgactttat gatttgaata
     3121 tccgcaccaa tgccgtctga aacgccaaac gtgcttcaga cggcattgcc cgcttcaagc
     3181 ctgcgccttg atatgccgcc gataccggca cttgccagtc ggacaaaatg ccttttattc
     3241 gatacacccg attcccacgc aaccggaaat atagtggatt aacaaaaatc aggacaaggc
     3301 gacgaagccg cagacagtac
//
LOCUS       DAWGNT010000181         3270 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.181, whole genome shotgun sequence.
ACCESSION   DAWGNT010000181 DAWGNT010000000
VERSION     DAWGNT010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3270
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.181"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(157..1257)
                     /locus_tag="WHR98_001820"
     CDS             complement(157..1257)
                     /locus_tag="WHR98_001820"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HEZ2308456.1"
                     /translation="METQLYIGIMSGTSMDGADAVLVRMDGGKWLGAEGHAFTPYPDR
                     LRRQLLDLQDTGADELHRSRILSQELSRLYAQTAAELLCSQNLAPYDITALGCHGQTV
                     RHAPEHGYSIQLADLPLLAELTQIFTVGDFRSRDLAAGGQGAPLVPAFHKALFRDDKE
                     TRVVLNIGGIANISVLPSDAPAFGFDTGPGNMLMDAWMQAHWQLPYDKNGAKAAQGNI
                     LPQLLDRLLAHPYFAQPHPKSTGRELFALNWLETYLGGGENRYDVLRTLSRFTAQTVF
                     DAVSHAAADARQMYICGGGIRNPVLMADLAEYFGTRVSLHSTAELKLDPQWVEAAAFA
                     WLAACWINRIPGSPHKATGASKPCILGAGYYY"
     gene            1582..3156
                     /locus_tag="WHR98_001821"
     CDS             1582..3156
                     /locus_tag="WHR98_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003748724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEZ2308457.1"
                     /translation="MAQIQMSANVKTINAVFAAMLVGTVGYFIYWGLGYTHYNYAALF
                     IIATMFGVFMAFNIGGNDVANSFGTSVGAGTLTIPQALLIAAVFEVSGAVIAGGEVTN
                     TIRKGIVDLKGVDFEPIQFVFIMMSALLAAALWLLFASKKGLPVSTTHSIIGGIVGSA
                     VCMAVMNDAASGDLIRWGKLGGIGVSWVLSPVLGGAVSYFLFSRVKKNVLDYNAWAEG
                     TLKGIKQEKKAYKERHRLFFEGLSEAEKVEYATKMAHDAQIYDEPEFDPQELQSEYYR
                     GLYAFDNRKNNVDSYKALHSWIPFIASFGAMMISAMLIFKGLKNLHLGMSNVNSFLTI
                     FMIGAAVWMGTFVFAKSLKRKDLGKSTFQMFSWMQVFTACGFAFSHGANDIANAIGPF
                     AAIMDVLRTNSVAAQNVVPPIAMLTFGIALIVGLWFVGKEVIKTVGTSLAEMHPASGF
                     TAELSAASVVMGASLMGLPVSSTHILVGAVLGIGLVNRNANWKLMKPIGLAWVITLPA
                     AAVLSVVCYLVLQAVF"
BASE COUNT          685 a          806 c          958 g          821 t
ORIGIN      
        1 gttaggacga gggggatgag gaggagcagg gttttcatgg cagggtttgt tttgttttga
       61 acgagtttga gtataaaggg attttaaggg tttgtaaacg aaaggggcga aaatgccgtc
      121 tgaacggcgg aacgggcttt cagacggtat ttgcgctcaa taataatatc ccgcgcccag
      181 aatacacggt ttggatgcgc cggttgcttt gtgcggacta ccggggatgc gattaatcca
      241 acacgccgcc aaccacgcaa atgcggctgc ttccacccat tgcggatcga gcttcagttc
      301 ggcggtgctg tgcagggaaa cgcgtgtgcc gaaatattcc gccaaatccg ccattaaaac
      361 aggattgcgg atgccgccgc cgcaaatgta catttgacgg gcatctgccg ctgcgtgtga
      421 gacggcgtcg aaaacggttt gcgcggtaaa acgggaaagc gtccgcaata cgtcgtatcg
      481 gttttcgccg ccgccaaggt aggtttcgag ccaatttagg gcaaacagtt cgcgccccgt
      541 gcttttaggg tggggttgtg cgaaatacgg gtgggcgagc agcctgtcga gcagttgcgg
      601 caatatgttg ccttgtgccg cctttgcacc gtttttgtcg taaggaagct gccagtgtgc
      661 ctgcatccac gcgtccatca gcatattgcc cggccctgtg tcgaagccga aggcgggtgc
      721 gtcggagggg agtacgctga tgttggcaat cccgccgatg ttcagtacca cgcgtgtttc
      781 tttgtcatcg cggaacaggg ctttgtgaaa ggcggggacg agcggcgcac cttgtccgcc
      841 ggccgcaagg tcgcggctgc ggaagtcgcc gacggtaaaa atctgagtca gttctgccag
      901 cagcggcaaa tcggcaagct gtatgctgta accgtgttct ggtgcatgtc ggacggtttg
      961 cccgtggcag ccgagggcgg taatgtcgta cggcgcgagg ttttgactgc acagcagttc
     1021 ggcggcggtt tgcgcgtaca ggcggctgag ttcttgcgac aaaatcctgc tgcggtgcag
     1081 ttcgtctgcg cctgtgtcct gcaaatccag caattggcgg cgcagcctgt cgggataggg
     1141 ggtaaaggcg tgcccttccg cgcccagcca tttgccgccg tccatccgta ccagcacggc
     1201 atccgcccca tccatactgg ttcccgacat gatgccgatg taaagctgtg tttccatcat
     1261 cactcccaaa ctggtgcaaa acgccatttt aacgtgtatt gacgctcgta taccgatttg
     1321 ccgccgcagt gtaaataaag tgtaaataaa tgtttcaaga cggatggaaa aatattataa
     1381 tgcgcccgca acatccagta gtagaagtgt catacaaacc gtttccggca gcagttttgc
     1441 attcggtcag gtttgggggt attcggatgc ggttcagaag gaaggatgcg tctgccatat
     1501 cccgaaacgg cagttcgacc ggaggcagca gtacagtgtc ggcaacactc atgatttcca
     1561 ccacattaaa ggaagattgc catggctcaa atccaaatga gcgcaaatgt taaaaccatc
     1621 aacgccgtct ttgccgccat gctggtaggt acagtcggct attttattta ttggggcttg
     1681 ggttataccc attacaatta cgccgcctta ttcattattg ccacgatgtt cggcgtgttt
     1741 atggcgttca acatcggcgg caacgatgtt gccaattctt tcggcaccag cgtcggtgcg
     1801 ggtacgctga ccatcccgca ggctttgctg attgcggcgg tatttgaggt cagcggcgcg
     1861 gtcatcgcgg gcggcgaggt aaccaatacc atacgcaaag gcatcgtcga tttgaagggt
     1921 gttgatttcg aacccataca gtttgtgttt attatgatgt ccgcgctttt ggcggcggcg
     1981 ttgtggctgt tgtttgcctc gaaaaaaggg cttccggtat ctaccaccca ttccattatc
     2041 ggcggcattg tcggcagcgc ggtatgtatg gcggtaatga acgatgccgc atcgggcgat
     2101 ttgatacgtt ggggcaagct gggcggtatt ggtgtttctt gggtattgtc gcccgtgttg
     2161 ggcggcgcgg tgtcctattt cctgttttcg cgcgtcaaga aaaacgtctt agattacaac
     2221 gcttgggcgg aaggcacgct caagggcatc aagcaggaaa aaaaggccta taaagaacgg
     2281 caccgcctgt ttttcgaggg tttgtccgaa gccgaaaaag tcgagtacgc caccaaaatg
     2341 gcgcacgacg cgcaaattta cgacgaaccc gaattcgatc cgcaagagct gcaatcggag
     2401 tattaccgcg gtctttatgc gttcgacaac cgtaaaaaca atgtcgattc ctacaaagca
     2461 ctgcattctt ggattccctt tatcgcttcg ttcggcgcga tgatgatttc cgctatgctg
     2521 attttcaagg gcttgaaaaa cctgcatttg gggatgagca acgtcaacag cttcctgacc
     2581 atctttatga taggcgcggc ggtgtggatg gggacgtttg tgtttgccaa aagcctcaag
     2641 cgtaaagact tgggcaaatc gacctttcag atgttttcat ggatgcaggt ctttaccgcc
     2701 tgcggcttcg cattcagcca cggggcgaac gatatcgcca acgccatcgg tccgtttgcc
     2761 gcgattatgg atgttttgcg taccaacagc gttgccgcgc aaaatgtcgt ccccccgatt
     2821 gcgatgctga ctttcggcat cgcgctgatt gtcggtttgt ggtttgtcgg taaagaggtg
     2881 attaaaaccg tcggtacgag tttggcggaa atgcaccctg cttcgggttt taccgccgaa
     2941 ctgtccgccg catccgtcgt gatgggcgcg tcgctgatgg ggctgcccgt gtccagtacg
     3001 catatcttgg tcggcgcggt actcggcatc ggtctggtca accgcaatgc caactggaaa
     3061 ctgatgaagc ccatcggttt ggcgtgggtc attaccctgc ctgccgccgc cgtattgtcg
     3121 gttgtctgct acttggtttt acaggcagta ttctgattgt aaaatactga tgccgtctga
     3181 acccgtgttc agacggcatt ttgttgatgg aatgtgcggg cttgtgcctt atgcacaatc
     3241 tgttctgtcg ggatatgccg tttggtatag
//
LOCUS       DAWGNT010000182         3210 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.182, whole genome shotgun sequence.
ACCESSION   DAWGNT010000182 DAWGNT010000000
VERSION     DAWGNT010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3210
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.182"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(158..2290)
                     /locus_tag="WHR98_001822"
     CDS             complement(158..2290)
                     /locus_tag="WHR98_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HEZ2308458.1"
                     /translation="MSIVSAPLPALSALIILAHYHGIAANPADIQHEFCTSAQSDLNE
                     TQWLLAAKSLGLKAKVVRQPIKRLAMATLPALVWCDDGNHFILAKTDGEGEHAQFLIQ
                     DLVTNKSAVLSFAEFSNRYSGKLILVASRASVLGSLAKFDFTWFIPAVIKYRRLFFEV
                     LVVSVVLQLFALITPLFFQVVMDKVLVHRGFSTLDVVSVALLVVSLFEIVLGGLRTYL
                     FAHTTSRIDVELGARLFRHLLSLPLSYFEHRRVGDTVARVRELEQIRNFLTGQALTSV
                     LDLAFSFIFLAVMWYYSSTLTWVVLASLPAYAFWSAFISPILRTRLNDKFARNADNQS
                     FLVESITAVGTVKAMAVEPQMTQRWDNQLAAYVASGFRVTKLAVVGQQGVQLIQKLVT
                     VATLWIGARLVIEGKLTVGQLIAFNMLSGQVAAPVIRLAQLWQDFQQVGISVARLGDI
                     LNAPTENASSHLALPDIRGEITFEHVDFRYKADGRLILQDLNLRIRAGEVLGIVGRSG
                     SGKSTLTKLVQRLYVPEQGRVLVDGNDLALAAPAWLRRQVGVVLQENVLLNRSIRDNI
                     ALTDTGMPLERIIEAAKLAGAHEFIMELPEGYGTVVGEQGAGLSGGQRQRIAIARALI
                     TNPRILIFDEATSALDYESERAIMQNMQAICANRTVLIIAHRLSTVKTAHRIIAMDKG
                     RIVEAGTQQELLAKPNGYYRYLYDLQNG"
     gene            complement(3091..3210)
                     /locus_tag="WHR98_001823"
                     /pseudo
     CDS             complement(3091..3210)
                     /locus_tag="WHR98_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
BASE COUNT          927 a          870 c          713 g          700 t
ORIGIN      
        1 atgagtgaaa aagaagtgca ggctgcctaa aaagacagaa aaagtctttc cggcagcctg
       61 cactttggtt tcatttcagt cagtaaaccc agtaaacgac ggtctgaaaa cgcagaacgt
      121 tacgaaaaaa gcagcctaca cgcccatccc ccgccttcta cccgttctgt aaatcataca
      181 gatagcggta atatccgttc ggcttcgcca gcaattcctg ctgtgttccc gcttccacaa
      241 tcctgccttt atccatggca atgatccggt gtgccgtttt aacagtggac agacggtggg
      301 cgataatcag caccgtccgg ttggcgcaaa tggcctgcat gttctgcata atcgctcgtt
      361 cactttcata atccagcgcg ctggtggctt catcaaaaat cagaatgcgc ggattggtga
      421 ttaacgcgcg ggcaatcgca atacgctgcc gctgtccgcc cgacaagccg gccccttgtt
      481 cgcccaccac ggtgccgtag ccttccggca gctccataat aaactcgtgt gcgcccgcca
      541 gtttggctgc ttcgataatg cgttccagcg gcatacccgt atccgtcagc gcgatattgt
      601 cgcgtatgct gcggttgagc agcacattct cctgcaagac cacgccgacc tgccgccgca
      661 gccaggcagg agcggccaaa gccaaatcgt tgccgtccac caacacccgt ccctgctccg
      721 gtacatacag acgctgcacc aatttggtga gtgtggattt gcccgacccc gaacgtccca
      781 caatccccag cacttccccc gcccgaatcc gcaggttcaa atcctgcaaa atcagcctgc
      841 cgtccgcctt atagcggaaa tcgacatgtt cgaacgtaat ctccccccgg atatcgggca
      901 aagccaaatg cgaagacgca ttctcggtcg gcgcattcag aatatccccc aaacgcgcca
      961 ccgaaatccc cacctgctgg aaatcctgcc acaactgcgc caaacggata acaggcgccg
     1021 ccacctgtcc cgagagcata ttaaacgcaa tcagctgccc caccgtcagc ttgccctcaa
     1081 ttaccagccg tgcgccaatc cacaacgtcg ccaccgtcac cagcttctga atcagctgca
     1141 ccccctgctg gccgaccacc gccaacttcg ttacccgaaa tcccgaagcc acataagccg
     1201 ccaactgatt gtcccaacgc tgcgtcatct gcggctccac cgccatcgcc tttaccgtac
     1261 ccaccgcagt gatgctttct actaaaaacg actggttgtc tgcattgcgc gcgaacttat
     1321 cgttcagacg cgtccgcagt atcggactga taaatgccga ccaaaacgca taggcaggca
     1381 acgaagccaa taccacccaa gtcagagtgg agctgtaata ccacatcacc gccagaaaga
     1441 taaacgaaaa cgccaaatcc aacaccgaag tcagcgcctg accggtcagg aaattgcgaa
     1501 tctgctccaa ttcccgcacc cgagccaccg tatcacccac tcgtctgtgc tcgaaatagg
     1561 ataaaggcag ggaaagcaga tgccggaaca aacgcgcgcc caattccaca tcaatacgtg
     1621 aagtcgtatg tgcaaacaga tacgtccgca aaccgcccaa cacaatctca aacagcgaca
     1681 ccaccaacaa agccaccgac accacatcca aagtagagaa tccccgatgt accagcacct
     1741 tgtccatcac cacttggaaa aacagaggcg taatcagcgc aaacagctgc aacaccaccg
     1801 acaccaccaa tacttcaaaa aacaaccggc ggtatttgat taccgccgga ataaaccagg
     1861 taaagtcaaa ctttgccaaa ctgcccaata ccgaagcgcg ggaagcaacc aatatcagtt
     1921 tgcccgaata tctgttagaa aattcggcaa aagacaatac cgcagactta ttcgtaacca
     1981 aatcctgtat caaaaattgg gcatgctcac cctcaccgtc tgttttggcc aaaatgaaat
     2041 ggttgccgtc atcacaccat accaatgcgg gtaaagtcgc catagccaaa cgtttaatag
     2101 gctggcggac tacctttgcc ttcaatccca aagatttggc ggctaacagc cattgcgttt
     2161 catttaaatc gctctgtgcg gaagtacaaa attcatgctg tatatcggca ggattggcgg
     2221 caatgccgtg gtaatgggcg aggatgatga gggcggaaag ggcggggagc ggtgcggata
     2281 cgatagacat aaataaaata tagttagatt ggatgtggat aacggctggc tggaaaagga
     2341 atatattaag tagaaagaaa tatataaata aaacagcaga actcattgta aggatatata
     2401 tgggaattgt aaagagaaag tatggaaaag ttctcgtttc aggaaggtaa aacggcttag
     2461 gaatcgagtt agatgaggat gcctcgcacc tctcgtgcct cctgcatacc gttaaggaac
     2521 agggttaagg tgcaggctgc tccgaactct gttgcggtcg ggtaatgtta ttttttgtgt
     2581 ttcaggcagc ctgaaatatc tgtatatttt tgttttaaat agattttaaa gattgataac
     2641 tgttcttgac gatttttcaa gaaaggagta aatttcaaga aaggagtaaa gtgacttatt
     2701 atcaatgaca agcaacgcgc gaagtgacga ggaaaactat ctacttaaat tctaaggagg
     2761 cttcgaatat cataaaccaa tcagaaacat agagataaaa attatgtaca aatataatcc
     2821 tcttatacaa tttattgcac agttgattat gtcttatgga gcaagcgtag ggtgggcact
     2881 tgctgcccca cgcgtttcat atttcaaggc agcctgaaac cgtgtgggca taaatgccta
     2941 ccctacatcc caaaaaacaa gcgcagcctg cgtgtgtagg gtgcgaactt tcggcaggca
     3001 gacacgcggt tttatagttt caagctgagt tgggatgctt aagataaagt acaaaacctt
     3061 aaaaaataag ggggctgtac tagattagcc ctaaattcca caccaatccc gcaaaatttt
     3121 tagctgtcgg gacggtgtgc cgaagttaaa tcgaaattcg cattctttca agaacagcgg
     3181 gaaagatttg cgatcaattc cgttctattt
//
LOCUS       DAWGNT010000183         3198 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.183, whole genome shotgun sequence.
ACCESSION   DAWGNT010000183 DAWGNT010000000
VERSION     DAWGNT010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3198
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.183"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(205..1056)
                     /locus_tag="WHR98_001824"
     CDS             complement(205..1056)
                     /locus_tag="WHR98_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-54 factor"
                     /protein_id="HEZ2308459.1"
                     /translation="MTLLGIKLKQTQQLNQRLQQSLRVLQMSGIELEREVENWLSDNP
                     LLERKDTDEFSDAEFSHYTAPARQIGGDEGEDMLSNIAGEQDFKQYLHAQVCEHPLSD
                     QESACVHILIDFLDEQGYLTDSIEDILDHTPLEWMLDEAMLKQALTALKKFDPAGVAA
                     ADLNESLILQIERSGECAAKPSALHIVRNALDSIDGNRSQTLARIKKRLPQTDSGTLE
                     AALDLIASLNPFPAAGFASSTPTPYSDEALANLLAFRGMEVSRRTIAKYRESFEIPAA
                     HKRKTAE"
     gene            1404..2918
                     /gene="katA"
                     /locus_tag="WHR98_001825"
     CDS             1404..2918
                     /gene="katA"
                     /locus_tag="WHR98_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase KatA"
                     /protein_id="HEZ2308460.1"
                     /translation="MTTSKCPVTHLTMNNGAPVADNQNSLTAGPRGPLLAQDLWLNEK
                     LADFVREVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFTTVAG
                     ERGAADAERDIRGFALKFYTEEGNWDVVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNM
                     RSATNNWDFWTLLPEALHQVTIVMSDRGIPAGYRHMHGFGSHTYSFWNEAGERFWVKF
                     HFRTQQGIKNLTNEEAAKIIADDRESHQRDLYEAIERGEFPKWTMYIQVMPEADAEKV
                     PYHPFDLTKVWPKKDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGIGASPDKM
                     LQARLFNYADAQRYRLGVNFRQIPVNRPRCPVHSNQRDGQGRADGNYGSLPHYEPNSF
                     GQWQQQPDFAEPPLKINGDAAHWDYRQDDDDYFSQPRALFNLMNDAQKQALFGNTAAA
                     MGDAPDFIKYRHIRNCYRCDPAYGEGVAKALGLTVEDAQAARATDPALGQPGLL"
BASE COUNT          767 a          901 c          824 g          706 t
ORIGIN      
        1 aaacccccgt cattcccgcg aaagcgggaa tccaggttcg ttgagtttcg gtcatttccg
       61 ataaattctt gcagctttgc gtttctagat tccctctttc gcgggaatga cgggatgcag
      121 gtttccgcgc ggacggattc ggcattcccg ctttcgcaga aatgccggct tttggtttgt
      181 tgtctttata agattattcg gcaattattc tgcggttttg cgtttgtgtg ctgccggaat
      241 ctcaaaggat tctctgtatt tggcaatggt gcggcgagaa acctccatgc cgcggaaagc
      301 cagcaggttg gcgagcgcct cgtcagaata cggcgtgggt gtggacgagg caaaaccagc
      361 ggcgggaaag ggattgagcg aagcaatgag gtcgagtgcg gcttcgagtg tgccgctgtc
      421 ggtttggggc aggcgttttt ttattcgcgc gagggtttgg ctgcggttgc cgtcaatgct
      481 gtcgagggcg tttcggacga tatgcagggc ggagggtttg gcagcacatt cgcccgatct
      541 ttctatctgc agtatcagcg attcgttcaa atcggcggcg gccacgcctg ccgggtcgaa
      601 ttttttcaat gcggtcaggg cttgtttcag cattgcttca tccaacatcc actccaaggg
      661 cgtatggtcg aggatgtctt cgatgctgtc ggtcagataa ccttgctcgt caaggaaatc
      721 gatgaggatg tggacacagg cggattcttg gtcggaaagc gggtgttcgc atacttgcgc
      781 gtgcaggtat tgcttgaaat cctgctcgcc ggcgatgttg gacagcatat cttcgccttc
      841 gtctccgccg atttgacggg caggcgcagt gtaatggctg aactcggcat cggaaaattc
      901 atccgtgtct ttgcgttcga gcagggggtt gtccgacagc cagttttcga cctcgcgttc
      961 aagttcgata cccgacatct gcaatacgcg caaagattgt tgcagccgct ggttgagctg
     1021 ctgggtctgt ttgagcttta ttccgagtaa ggtcatgata atgtggggaa aattgttatt
     1081 ttcagcctgt cggcgcaaaa aatgccgcaa agcgtcattg cattataaat ggttttaatg
     1141 agcgggttcg gattccgttc gataacaaaa aacaaacgaa aatcaagaac cgattgctta
     1201 taataatatt aaatcgattt catagtttta atagcgaaaa tcttggcgta tagtcgcatc
     1261 catagttttt acaaaatgga aataaaatgt cgattcaaga aatttattgc aatcaagaaa
     1321 ccggttacga atacgctttc cgccaaatcg tactgtaagc cgtttacccc catttgacca
     1381 acctgagaaa aggaacaaga gcgatgacta cctccaaatg ccctgtaacc catctgacca
     1441 tgaacaacgg cgcgcctgtt gccgacaatc aaaacagcct gaccgccggt cctcgcggcc
     1501 ctctgctggc gcaggatttg tggctgaatg aaaaactcgc cgacttcgtg cgcgaagtca
     1561 tccccgaacg ccgtatgcac gccaaaggtt cgggcgcgtt cggtacgttt accgtaacgc
     1621 acgacatcac caaatacacc cgcgccaaaa tcttcagcga agtcggcaaa aaaaccgaga
     1681 tgttcgcccg tttcaccacc gtggcaggcg aacgcggcgc agccgatgca gaacgcgaca
     1741 tccgcggttt tgccttgaaa ttttataccg aagaaggaaa ctgggatgtg gtcggcaaca
     1801 acacgcccgt gttcttcctg cgcgacccgc gtaagttccc cgacctgaac aaagccgtca
     1861 aacgcgaccc gcgcaccaat atgcgctctg ccacaaacaa ctgggacttc tggacgctgc
     1921 tgcccgaagc actgcaccaa gttaccatcg tgatgagcga ccgcggcatc cccgccggct
     1981 accgccatat gcacggcttc ggttcgcata cctacagctt ctggaacgaa gcaggcgagc
     2041 gtttttgggt gaaattccat ttccgcaccc aacaaggcat taaaaacctg accaacgaag
     2101 aagccgccaa aatcatcgcc gacgaccgcg aaagccatca gcgcgactta tacgaagcca
     2161 tcgaacgcgg cgagtttccg aaatggacga tgtacatcca agtcatgcct gaagcagacg
     2221 cggaaaaagt accttatcat ccgtttgact tgaccaaagt ttggccgaaa aaagactatc
     2281 cgctgattga agtgggcgaa ttcgagttga accgcaatcc cgaaaacttc ttcgccgatg
     2341 tggaacaatc cgccttcgca ccgagcaacc tcgttcccgg tatcggcgcg agcccagata
     2401 aaatgttgca agcccgtttg ttcaattacg ccgacgcgca acgctaccgc ttgggcgtga
     2461 acttccgcca aatccctgtc aaccgtccgc gttgccctgt tcacagcaac cagcgcgacg
     2521 gacaaggacg cgccgacggc aactacggca gcctgccgca ctacgaaccc aatagcttcg
     2581 gccaatggca gcaacaaccc gacttcgccg aaccgccttt gaaaatcaac ggcgacgcgg
     2641 cgcactggga ctaccgccaa gacgatgacg actatttcag ccaaccgcgc gccctgttca
     2701 acctgatgaa cgacgcgcag aaacaggcat tgttcggcaa caccgccgcc gcaatgggcg
     2761 acgcgcccga cttcatcaaa taccgccata tccgcaactg ctaccgttgc gatccggcat
     2821 acggtgaagg cgtggcaaaa gccctcggac tgactgtcga agacgcacaa gccgcccgcg
     2881 cgaccgaccc cgcactcggc cagcccggtt tgctgtaagg gggcattatg tggatggaaa
     2941 ttgaagaaat cctgtcccgc gccgtccgct accggaaata accgggcata aaaatgccgt
     3001 ctgaaacgtc gtttgaccgc ttcagacggc atttctacac cccgcccccg ccgtttcagt
     3061 gggcgttttt tattaaacgc aaaatatccc gtcattcccg ccccacagcc cacttttccg
     3121 ccgtcattcc cgcaccatcc ccaccggttc aaaccggcac gaaaactttt ccgcgtcatt
     3181 cccgcgaaag cgggaatc
//
LOCUS       DAWGNT010000184         3175 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.184, whole genome shotgun sequence.
ACCESSION   DAWGNT010000184 DAWGNT010000000
VERSION     DAWGNT010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.184"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            37..2295
                     /locus_tag="WHR98_001826"
     CDS             37..2295
                     /locus_tag="WHR98_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HEZ2308461.1"
                     /translation="MYTRIMEISPWTLRSAKLEKEHKRLQESLTSLGNGYMGMRGSFE
                     ETYSADSHLGTYIAGVWFPDKTRVGWWKNGYPKYFGKAINALNFSKVKIFVDGQEVDL
                     AKNDVAGFSVELDMQHGVLRRSFTVFGVRFNVCKFLSVAQKELAVIRWEAVSVDGKTH
                     QVRIDSIIDADVKNEDSNYEEKFWQVLDKGVSDSLSYIAAQTVANPFGVEQFIVNAEQ
                     TFAGSFKALGGSQTDWQVSNSFEVEVGGTPKTFEKRVIVTTSRDYQGLEAVKAAGRAL
                     SEKVAGVAFETLLDAHKAGWLHRWEIADVVIEGSDEAQQGIRFNLFQLFSTYYGEDAR
                     LNIGPKGFTGEKYGGATYWDTEAYAVPLYLALAEPEVTRNLLQYRRNQLPQAQHNARE
                     QGLAGALYPMVTFTGIECHNEWEITFEEIHRNGAIPYAIYNYTNYTGDEGYLAKEGLE
                     VLVEVSRFWADRVHFSKRNGKYMIHGVTGPNEYENNINNNWYTNTLAAWVLDYTREAL
                     AKYPRPDLNVRAAELEKWADISANMYRPHDEELGVFVQHDGFLDKDIRPVSALSPDDL
                     PLNQKWSWDKILRSPFIKQADVLQGIYFFGDRFNIDEKRRNFDFYEPMTVHESSLSPC
                     IHSILAAELGKEEKAVEMYRRTARLDLDNYNNDTEDGLHITSMTGSWLAIVQGFAQMK
                     TWGGKLSFAPFLPGAWTGYAFHINYRGRLIKVAVGKENVVFTLLKGEPLDLQVYGKDI
                     TLDGSHAAALEK"
     gene            2308..2973
                     /gene="pgmB"
                     /locus_tag="WHR98_001827"
     CDS             2308..2973
                     /gene="pgmB"
                     /locus_tag="WHR98_001827"
                     /EC_number="5.4.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HEZ2308462.1"
                     /translation="MTFTAVLFDLDGVITDTAEYHYRAWKKLAEELGIGIDRKFNEQL
                     KGVSRDDSLKRILAHGGKTVGEAEFAELTRHKNDNYVEMIQAVKPEDVYPGILPLLEA
                     LKANGKKIALASASKNGPFLLERMGLTHFFDAIADPAAVAHSKPAPDIFLAAAEGVGA
                     DIRRCIGIEDAAAGVAAIKAAGALPIGVGKAEDLGSDIALVSGTAELTYAYLQNVWAQ
                     SGR"
BASE COUNT          800 a          977 c          805 g          593 t
ORIGIN      
        1 cattccctca aatcaatcca aacaggagct tcataaatgt acacaagaat tatggaaatc
       61 agcccttgga cgctgcgttc ggcaaagctg gaaaaagaac acaaacggct gcaagagagc
      121 ctgaccagtt tgggcaacgg ctatatgggt atgcgcggca gctttgagga aacctattcc
      181 gccgacagcc acttgggcac ctacatcgcc ggcgtgtggt tccccgacaa aacccgcgtc
      241 ggctggtgga aaaacggcta ccccaaatat ttcggtaaag ccatcaacgc gctcaatttc
      301 agcaaagtca aaatctttgt cgacggacaa gaggtggact tggcgaaaaa cgatgttgcc
      361 ggcttctccg tcgaactcga tatgcagcac ggcgtgttgc gccgctcgtt caccgtattc
      421 ggtgtgcgtt tcaatgtgtg caaattcctg tccgtcgcgc aaaaagagct ggcggttatc
      481 cgctgggaag ccgtatccgt tgacggcaaa acccaccaag tccgcatcga ttccatcatc
      541 gatgccgacg tgaaaaacga agactccaac tacgaagaaa aattctggca ggtattggac
      601 aaaggcgttt cagacagtct ctcctacatt gccgcccaaa ccgttgccaa ccctttcggc
      661 gtggaacaat ttatcgtcaa cgccgagcaa actttcgccg gcagcttcaa agccctcggc
      721 ggcagccaaa ccgactggca agtctccaat tctttcgagg tcgaagtcgg cggcacgccc
      781 aaaacctttg aaaaacgggt tattgttacc accagccgcg attatcaggg cttggaagca
      841 gtgaaagccg caggccgcgc cttgtcggaa aaagtcgcag gcgttgcgtt tgaaaccttg
      901 ctggacgcgc acaaagcagg ctggctgcac cgttgggaaa tcgccgacgt ggtcatcgaa
      961 ggcagcgacg aagcgcagca aggcatccgt ttcaatctgt tccaactgtt ctccacctac
     1021 tacggcgaag atgcgcgcct gaacatcggc cccaaaggct ttaccggcga aaaatacggc
     1081 ggcgcgacct attgggatac cgaagcctat gccgtaccgc tctacctcgc actggcggaa
     1141 cccgaagtta cccgcaacct gctgcaatac cgccgcaacc aactgccgca ggcgcagcac
     1201 aacgcgcgcg aacagggctt ggcgggcgca ctctatccga tggtaacgtt tacgggtatc
     1261 gagtgccaca acgaatggga aatcaccttc gaggaaatcc accgcaacgg cgcgattcct
     1321 tacgccatct acaactacac caactacacc ggcgacgagg gctatcttgc caaagaaggc
     1381 ttggaagtct tggtcgaagt gtcccgcttc tgggcggacc gcgtccactt ctccaaacgc
     1441 aacggcaaat acatgattca cggcgtaacc ggcccgaacg aatacgaaaa caacatcaac
     1501 aacaactggt acaccaacac cctcgccgca tgggtattgg actacacccg cgaagccttg
     1561 gcgaaatacc cgcgtccgga tttgaacgtg cgtgccgccg agttggaaaa atgggcggac
     1621 atcagcgcga atatgtaccg tccgcatgac gaagaactcg gcgtattcgt gcagcacgac
     1681 ggcttcctcg ataaagacat ccgcccagtg tccgcgcttt cgcccgacga tttgccgctc
     1741 aaccagaaat ggtcgtggga caaaatcctg cgttcgccct tcatcaaaca ggcggacgtc
     1801 ttgcaaggca tctacttctt cggcgaccgt ttcaatatcg acgaaaaacg ccgcaacttc
     1861 gacttctacg aaccgatgac cgtgcatgaa agctcgttgt cgccgtgtat ccactctatt
     1921 ctcgccgccg aactgggcaa agaagaaaaa gccgtggaaa tgtaccggcg caccgcccgc
     1981 ctggacttgg acaactacaa caacgacacc gaagacggcc tgcacatcac ctccatgacc
     2041 ggctcgtggc tcgccatcgt ccaaggtttc gcccaaatga aaacctgggg cggcaaactc
     2101 agctttgcac cgttcctgcc gggcgcatgg acaggctacg ccttccatat caactaccga
     2161 ggccgtctga ttaaagtcgc cgtcggcaaa gaaaacgtcg tcttcaccct gctcaaaggc
     2221 gagccgctcg atttgcaggt gtatggcaaa gacatcacgc tcgacggcag ccacgccgcc
     2281 gcgttggaaa aataaggagg gtgcaaaatg acgtttaccg cagtcctctt cgatctcgac
     2341 ggcgtgatta ccgataccgc cgaataccac taccgcgcgt ggaaaaaact cgccgaagaa
     2401 ctgggcatcg gcatcgaccg caagtttaac gagcagctca aaggcgtgtc gcgcgacgat
     2461 tcgctcaaac gcatcctcgc gcacggcggt aaaaccgtcg gcgaagccga gtttgccgaa
     2521 ctgacccgcc acaaaaacga caactacgtc gagatgattc aggcagtcaa acccgaagac
     2581 gtgtaccccg gcattttgcc gctgctggaa gcattgaaag caaacggcaa aaaaatcgcc
     2641 ctcgcatccg ccagtaaaaa cggcccgttc ctgctcgaac gcatggggct gacccacttc
     2701 ttcgacgcca ttgccgaccc tgccgccgtc gcgcattcca aacccgcccc cgacatcttc
     2761 ctcgccgccg ccgagggcgt gggcgcagac atccgccgct gcatcggcat tgaagacgct
     2821 gccgcaggtg tcgccgccat caaagccgcc ggcgccttac ccatcggcgt gggcaaagcc
     2881 gaagacttgg gcagcgacat cgcgctggtg tccggcaccg ccgagctgac ctatgcctat
     2941 ttgcaaaacg tgtgggcaca gtcgggcagg taaaacgcgt cagataaagt gttaaggaag
     3001 taaaaggccg tctgaacagt gtttcagacg gcctgagacc tttgcaaaat tcctttccct
     3061 cccgacagcc gaaatccaaa cacaggtttt cggctgtttt cggctgtttc cgccccagat
     3121 acctcctaat tctacccaaa cgccccctta atcctccccg gatacccgat aatca
//
LOCUS       DAWGNT010000185         3161 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.185, whole genome shotgun sequence.
ACCESSION   DAWGNT010000185 DAWGNT010000000
VERSION     DAWGNT010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3161
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.185"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            30..3020
                     /locus_tag="WHR98_001828"
     CDS             30..3020
                     /locus_tag="WHR98_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly/adherence protein PilC"
                     /protein_id="HEZ2308463.1"
                     /translation="MNEGNQLEVKGNGQYSTIKDKDREREYTYHQGRGGGGSVSFNNS
                     DELVSRQSGTAVFGTATYLPPYGKVSGFDERKLKERTNALNWIHTTHPGLIGYSYAGV
                     VCRDSTGCPKLVYKTQFTFGNSGLAKKANGGGLDIYVDKSRDNSPIYKLKDHPWLGVS
                     FNLGSENTVKNSKSSNKLISSFSEDNNNQTIVSTTEGSPISLGDQQREHTAVVYYLNA
                     KLHLLDKKGIKDITGKTVRLGVLKPSIDVKTQNTGLGLLNFWAKWDIKDNGQIPVKLG
                     LQQVKAGRCINKPNPNPNKKALSPALTAPALWFGAGQDGKAEMYSASVSTYPDSSSSR
                     IFLQNLKRKNDPNKPGRHSLADLAKSDIENRQPNFTGRQTIIRLDGGVQQIKLGRNND
                     EVVNFNGNNGNNATFGIVKDLGVDPDANEWKKVLLPWTVRASNDDNQFKTINQQLNQQ
                     KIQYSQRYRIRENGNNGKRDLGDIVNSPIVAVGEYLATSANDGMVHIFKKGNGDARNY
                     SLKLSYIPGTMPRKNIENQDSTLAKELRAFAEKGYVGDRYGVDGGFVLRQVEWKGQNR
                     VFMFGAMGFGGRGAYALDLSKIDSNNPTAVSLFDVKHDSNNGNNRVELGYTVGTPQIG
                     KTHDGKYAAFLASGYATKDITSGDNKTALYVYDLESSGTLIKKIDVPDGKGGLSSPTL
                     VDRDLDGTIDIAYAGDRGGKMYRFDLSGNNPNSWTVRTIFEGTKPITSAPAISQLKDK
                     RVVIFGTGSDLSEDDVLSTDEQHIYGIFDDDTATNNVKVDLKGLGGGLLEQHLTQEDK
                     TLFLTDYKRSDGSGDKGWVVKLEAGQRVTVKPTVVLRTAFVTIHKYTGTDKCGAETAI
                     LGINTADGGKLTKKSARPIVPADNTAVAQYSGHKKGTNGKSIPIGCMEKNGGTVCPNG
                     YVYDKPVNVRYLDEKKIDGFSTTADGDAGGSGIDPAGKRSGKNNRCFSQKGVRTLLMN
                     DLDSLDITGPTCGMKRISWREIFY"
BASE COUNT          908 a          796 c          804 g          653 t
ORIGIN      
        1 tggcgcaaac ctataaatac gctattatca tgaacgaggg aaaccagctc gaggtaaagg
       61 ggaatgggca atattcaaca ataaaggaca aagacaggga acgcgaatat acttatcatc
      121 agggcagagg aggaggaggc tctgtctcat tcaacaatag cgatgagctt gtttctcgac
      181 aaagcggtac tgccgttttt ggcacagcca cctacctgcc gccctacggc aaggtttccg
      241 gttttgatga aagaaagctg aaagagcgca ccaatgccct taattggatt catacgaccc
      301 acccagggtt gataggctac agctacgccg gtgtcgtatg cagagacagc acaggctgtc
      361 ccaaacttgt ctataaaacc caatttacct tcggtaattc cggtttggca aaaaaggcaa
      421 acggcggcgg gctggatata tacgtagaca aaagccgcga caattcgccc atttacaaat
      481 tgaaagatca tccatggttg ggcgtatctt tcaatttggg cagcgagaat accgtcaaaa
      541 atagcaaatc atccaacaaa ttgatatctt cttttagtga agacaataat aatcaaacca
      601 tcgtctctac gacagaaggc tcccctattt cccttggcga ccagcagcgc gaacataccg
      661 ccgtggtcta ttatctgaac gccaaactgc acctgctgga taaaaaaggg attaaagata
      721 tcaccggcaa aacagtgcgg ttgggtgtct tgaagccgag catcgatgtg aagacacaaa
      781 atacggggct tggcttgcta aatttttggg ctaagtggga cattaaagat aacgggcaga
      841 ttccagtcaa gctcggcctg cagcaagtca aagcaggccg ctgcatcaat aaaccgaacc
      901 ccaatcccaa caaaaaagcc ctttcgccgg cactgactgc ccccgcgctg tggttcggag
      961 ctgggcaaga tggtaaggcg gagatgtatt ccgcttcggt ttccacctac cccgacagtt
     1021 cgagcagccg catcttcctt caaaatctga aaagaaaaaa cgaccccaac aaacccggcc
     1081 gccattccct cgcagacttg gctaagtcgg atattgaaaa tcgacagccg aatttcacag
     1141 ggcggcaaac catcatccga ttggatggcg gcgtacagca gatcaaactg ggtagaaaca
     1201 atgatgaggt cgtcaatttt aatggaaaca acggcaacaa cgcaactttc ggcattgtta
     1261 aggacttggg cgtcgatcct gatgccaatg agtggaaaaa agtattgctg ccttggacgg
     1321 ttcgtgcttc caatgatgac aatcaattta aaacaattaa ccaacaactt aaccaacaaa
     1381 aaatccaata cagccaaaga taccgcatcc gcgaaaacgg caacaacggc aagcgcgatt
     1441 tgggcgacat cgtcaacagc cccatcgtgg cggtcggcga gtatttggct acttccgcca
     1501 acgacgggat ggtgcatatc ttcaaaaaag gcaacgggga cgcgcgcaac tatagtctga
     1561 agctcagcta catccccggc acgatgccgc gcaagaatat tgaaaaccaa gactccaccc
     1621 tcgccaaaga gctgcgcgcc tttgccgaaa aaggctatgt gggcgaccgc tacggcgtgg
     1681 acggcggctt tgtcttgcgc caagttgaat ggaaagggca aaaccgcgtg tttatgttcg
     1741 gcgcgatggg ctttggcggc agaggcgcat acgccttgga tttaagcaaa atcgacagca
     1801 ataacccgac cgccgtttcc ctgtttgatg tcaaacatga cagtaataac ggcaataatc
     1861 gcgtggaatt aggctacacc gtcggcacgc cgcaaatcgg caaaacccac gacggcaaat
     1921 acgccgcctt cctcgcctcc ggttatgcga ctaaagacat taccagcggc gacaataaaa
     1981 ccgcgctgta tgtgtatgat ttggaaagca gcggtacgct gattaaaaaa atcgatgtac
     2041 ccgacggcaa gggcgggctt tcgtccccca cgctggtgga tagagatttg gacggcacga
     2101 tcgatatcgc ctatgccggc gatcgcggcg gcaagatgta ccgctttgat ttaagcggca
     2161 acaacccgaa cagttggact gtacgcacta tttttgaagg cacaaaaccg attacttccg
     2221 cgcctgctat ttcccaactg aaagacaaac gcgtggtcat cttcggcacg ggcagcgatt
     2281 tgagtgagga tgatgtactc agtacggatg aacaacatat ttacggtatc ttcgacgacg
     2341 atacggcgac gaataatgta aaggtagacc ttaaaggttt gggaggtggg ctgctcgagc
     2401 aacaccttac tcaggaagat aaaaccttat tcctgaccga ttacaagcga tccgacggct
     2461 cgggcgacaa gggctgggta gtgaaattgg aagccggaca gcgcgttacc gtcaaaccga
     2521 ccgtggtatt gcgtaccgcc tttgtaacca tccataaata tacgggtacg gacaaatgcg
     2581 gcgcggaaac cgccattttg ggcatcaata ccgccgacgg cggcaagctg accaagaaaa
     2641 gcgcgcgccc gattgtgccg gccgacaata cggctgtcgc gcaatattcc ggtcataaga
     2701 aaggcaccaa cggcaaatcc atccctatag gttgtatgga aaaaaacggg ggaaccgtct
     2761 gcccgaacgg atatgtttac gacaaaccgg ttaatgtgcg ttatctggat gaaaagaaaa
     2821 tagacggatt ttcaacaacg gcagacggcg atgcgggcgg cagcggtata gaccccgccg
     2881 gcaagcgttc cggcaaaaac aaccgctgct tctcccaaaa aggggtgcgc accctgctga
     2941 tgaacgattt ggacagcttg gacattaccg gcccgacgtg cggtatgaaa cgaatcagct
     3001 ggcgtgaaat cttctactga tttgcacgcg aaaatgccgt ccgaaaggtt ttcggacggc
     3061 attttttgcg tttttcggga ggggcgggtt cgtaaaaggc gggctatagg gtaggcttca
     3121 tctcgccaat ctcactgaat ccatcaattt ccacaattca a
//
LOCUS       DAWGNT010000186         3100 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.186, whole genome shotgun sequence.
ACCESSION   DAWGNT010000186 DAWGNT010000000
VERSION     DAWGNT010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.186"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..211)
                     /locus_tag="WHR98_001829"
     CDS             complement(<1..211)
                     /locus_tag="WHR98_001829"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308464.1"
                     /translation="MLPTRKTARKIQARHIALPFSGKPQFYRPQERLSKQAQATPPGH
                     FRFHRLSVVRIMQQHHQRITLFGRQQ"
     gene            271..894
                     /locus_tag="WHR98_001830"
     CDS             271..894
                     /locus_tag="WHR98_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEZ2308465.1"
                     /translation="MKKPTDTLPVNLQRRRLLCAAGALLLSPLAHAGAQREETLADDV
                     ASVMRSSVGSVNPPRLVFDNPKEGERWLSAMSARLARFVPEEEERRRLLVNIQYESSR
                     AGLDTQIVLGLIEVESAFRQYAISGVGARGLMQVMPFWKNYIGKPAHNLFDIRTNLRY
                     GCTILRHYRNLEKGNIVRALARFNGSLGSNKYPNAVLGAWRNRWQWR"
     gene            1005..2387
                     /locus_tag="WHR98_001831"
     CDS             1005..2387
                     /locus_tag="WHR98_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEZ2308466.1"
                     /translation="MARDNRIQMFPHEWRASTTLSGVYALRMLGMFLVLPVLAVYAAS
                     LPGAEGNKTLVGLAMGIYGLTQALLQLPLGIASDKFGRKKTIYVGLIVFAAGSFLAAA
                     ADTLPMLVAARAIQGAGAVSAAVTALLADLTRDGVRTRAMAMIGLSIGLTFSVSLVVA
                     PVIADAVGVRGLFLLTGILTVASIGVVAWMTPDPEVSKLHEDTQAQPSRIGEVLKNRR
                     LLTLDFGIFALHAAQMALFTALPFAMTQLGLEKIQHWKVYLPSTITGLVVMVPLIIVG
                     ETRNKLKQVFILGIACIAAAQLGLLSGMRSVGLITAYLVVYFIGFNVLEASLPSMVSK
                     IAPSDLKGTAMGVYNTMQSLGLFAGGVAGGLLFQKYGFSGVFAFCSILMLLWLVIAVL
                     SPAPKPVKNLSYPVGGVWQVNRDGLQRALLQLEGVEDIGFSFDGQTVYLKVLQKGFDQ
                     AAAEKIITGV"
     gene            2390..2914
                     /locus_tag="WHR98_001832"
     CDS             2390..2914
                     /locus_tag="WHR98_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003710541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEZ2308467.1"
                     /translation="MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQ
                     RVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANE
                     MKMLGGRNENSGGAPYEEGYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVP
                     AAAPVEDIDDDIPF"
BASE COUNT          621 a          845 c          938 g          696 t
ORIGIN      
        1 cctgctgccg cccgaaaagc gtgatgcgct gatggtgctg ctgcataatc cggacgacgg
       61 ataaccggtg aaaacggaaa tgcccgggcg gtgttgcctg tgcctgtttg gacaagcgtt
      121 cttgagggcg gtagaattga ggtttgcccg aaaagggcag ggcgatatgc cgcgcttgga
      181 ttttgcgcgc ggtttttcgc gttggaagca atcattgtct gtttgaatat ttaatgccgt
      241 ctgaaacgtc cggacgcgcc cccgttccct atgaaaaaac cgaccgatac cctacccgtt
      301 aatctgcaac gccgccgcct gttgtgtgcc gccggtgcgt tgttgctcag tcctctggcg
      361 cacgccggcg cgcaacgtga ggaaacgctt gccgacgatg tggcttccgt gatgaggagt
      421 tctgtcggca gcgtcaatcc gccgaggctg gtgtttgaca atccgaaaga gggcgaacgt
      481 tggttgtctg ccatgtcggc acgtttggca aggttcgtcc ccgaggagga ggagcggcgc
      541 aggctgctgg tcaatatcca gtacgaaagc agccgggccg gtttggatac gcagattgtg
      601 ttggggctga ttgaggtgga aagcgcgttc cgccagtatg caatcagcgg tgtcggcgcg
      661 cgcggcctga tgcaggttat gccgttttgg aaaaactaca tcggcaaacc ggcgcacaac
      721 ctgttcgaca tccgcaccaa cctgcgttac ggctgtacca tcctgcgcca ttaccggaat
      781 cttgaaaaag gcaacatcgt ccgcgcgctt gcccgcttta acggcagctt gggcagcaat
      841 aaatatccga acgccgtttt gggcgcgtgg cgcaaccgct ggcagtggcg ttgattttga
      901 acccgcgccg caaccgaaat acggcgaatc ctgtataatc cgaaaatctg ttcactggaa
      961 gttcagacgg cattgcaact gttgatgccg tctgaaaaaa tatgatggca agagataacc
     1021 gcatccaaat gtttccgcac gaatggcgcg ccagtacgac gctttccggc gtgtacgcgc
     1081 tgcgtatgct gggtatgttc ctcgtgctgc ccgtattggc ggtgtatgcc gcctcgctgc
     1141 ccggcgcgga aggcaacaaa acgctggtcg ggctggcaat gggcatttac gggctgacac
     1201 aggctctgct gcaactgcct ttgggcatcg cttccgacaa gttcgggcgc aagaaaacca
     1261 tttatgtcgg gctgattgtg tttgcagcgg gcagcttcct tgccgccgcc gccgatacgc
     1321 tgcccatgct ggtcgccgca cgcgccatac agggtgcggg agcggtcagt gcggcggtta
     1381 ccgcgctgct ggcggatttg acgcgcgacg gcgtacgtac ccgcgcgatg gcgatgatcg
     1441 gtttgagtat cggtctgacg ttttcggtca gcctcgtcgt tgcccctgtg attgccgacg
     1501 cggtgggcgt acgcggcttg ttcctgctga ccggtatttt gaccgtcgcc agtatcggcg
     1561 tggtggcgtg gatgactccc gacccggagg tttccaagct gcacgaagat acgcaggcgc
     1621 agccttcgcg cataggcgaa gttttgaaaa accgtaggct gctgacgctc gatttcggca
     1681 ttttcgccct gcacgccgcg caaatggcat tgtttaccgc gctgcctttt gcgatgacgc
     1741 agctcggttt ggaaaaaatc cagcattgga aagtctatct gccctcgacc attacgggct
     1801 tggtggtgat ggttccgctg attatcgtcg gcgagacgcg caacaagctc aaacaggttt
     1861 ttatcttggg catcgcctgc atcgcggcgg cacagctcgg tttgctgtcc ggtatgcgct
     1921 cggtaggctt gattaccgct tatttggttg tttactttat cggttttaat gtgttggaag
     1981 cgagcctgcc gtctatggtt tccaaaatcg cgccgtccga cctgaagggt acggcgatgg
     2041 gcgtgtacaa cacgatgcag tcgctcggac tgtttgccgg cggcgtggca ggcggtttgc
     2101 tgtttcaaaa atacggcttt tccggcgtgt ttgccttttg cagcatattg atgctgctgt
     2161 ggctggtgat tgccgtttta tcgcctgcgc ccaagcccgt caaaaacctc agttaccctg
     2221 tcggcggcgt gtggcaggtc aatcgggacg gattgcaacg cgccctgttg caactcgaag
     2281 gcgtggaaga catcggtttc agtttcgacg ggcagaccgt ctatctcaaa gtgttgcaga
     2341 agggtttcga tcaggctgcc gctgaaaaaa tcattacagg agtttaaaaa tgtcattgaa
     2401 caaagttatc cttatcggcc gcctcggacg cgatcccgaa gtgcgctata tgcccaacgg
     2461 cgaggcggtg tgtaatttca gcgtcgccac cagcgaaact tggaacgacc gcaacggcca
     2521 acgtgtagag cgtactgagt ggcacaacat cacgatgtac cgcaaactgg cggaaattgc
     2581 cgggcaatac ctcaaaaaag gcgggctggt ttatctggaa ggcagaatcc aaagccgcaa
     2641 ataccaaggc aaagacggca tcgaacgcac cgcttacgat attgtcgcca acgaaatgaa
     2701 aatgttgggc gggcgcaatg aaaacagcgg cggtgcgcct tacgaggaag gttacggtca
     2761 gagtcaggag gcttaccaac gccccgcaca gcaaagccgg cagcccgcct ccgacgcgcc
     2821 gtcccatccc caagaagcac cagccgcgcc gcgccgccaa cccgtgcctg ccgccgcccc
     2881 ggtcgaggac attgacgacg atatcccgtt ctgaatttta cggccggaca tcctcgcgga
     2941 gggaaatcat aaaggacgga gaaaccttaa accttacggg gcagggtttc tcttttttgc
     3001 atttgggccg gcttgttgcc gccctttgcg ttgggcggaa cgttgcgatt gcgccgttcg
     3061 ggcgttttga ggcagtgatg cctgccgcac gtccccgctg
//
LOCUS       DAWGNT010000187         3083 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.187, whole genome shotgun sequence.
ACCESSION   DAWGNT010000187 DAWGNT010000000
VERSION     DAWGNT010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3083
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.187"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            112..1341
                     /gene="sstT"
                     /locus_tag="WHR98_001833"
     CDS             112..1341
                     /gene="sstT"
                     /locus_tag="WHR98_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEZ2308468.1"
                     /translation="MAFGKSLFHAIGRVSLVRQIAAGLALGIVIGSVSPQLGLAAGLF
                     GSLFVGALKAVAPVLVFILVAATIAQHQKGNKAHIRPIIILYLIGTFSAALTAVIAGM
                     VFPTHIVLAGAGDVSAAPPSGIVEVLKSLLMNLVANPINAIANANYIGILAWALVLGA
                     ALRNHGSDVTRQVVADLAEAVSTVVKWIIRFAPLGIFGLVSSTIAETGFGALAGYAKL
                     LAVLLGCMAFIALAVNPAIVWWKIRRNPYPLVFTCLRESGVYAFFTRSSAANIPVNMA
                     LAKKLGLHEDTYSISIPLGATVNMGGAAITITVLAMAAAHTQGIQVDFATALLLSLVA
                     TVSACGASGVAGGSLLLIPLACSLFGISNDVAMQVVAVGFIIGVIQDSAETALNSSTD
                     VLFTAAADLGRQRNRAE"
     gene            1453..2712
                     /locus_tag="WHR98_001834"
     CDS             1453..2712
                     /locus_tag="WHR98_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002236258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HEZ2308469.1"
                     /translation="MFKRSVIAMACIVALSACGGGGGGSPDVKSADTPSKPTAPVVAE
                     KETEAKEDAPQAGSQGQGAPSTQGSQDMAAVSAENTGNGGAATTDNPKNEDEGSQNDM
                     PQNAAESANQTGNNQPAGSQNPAPSTNPNATNGGGDFGRTNVGNSVVIDGPSQNITLT
                     HCKGDSCTGDNLLSEEAPSRSEFESLNDSGRIDKYKKDGQDKFTNLVATKVEKKGLNK
                     YIIFYTDKPPTRSARSRRSLPTEMPLIPVNQADTLIIDGEAVSLTGHFGNIFAPEGNY
                     RYLTYGAEKLPGGSYALRVQGEPAKGEMLAGTAVYNGEVLHFHTENGRPSPFRGRFAA
                     KVDFGSKSVDGIIDSGDDLHMGTQKFKAAIDGNGFKGTWTENGSGDVSGKFYGPAGEE
                     VAGKYSYRPTDAEKGGFGVFAGKKEQD"
     gene            complement(2787..3002)
                     /locus_tag="WHR98_001835"
     CDS             complement(2787..3002)
                     /locus_tag="WHR98_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308470.1"
                     /translation="MFKLGVYACLGLFAGWVLLLIVQLWFSFLEAELFFKITLTMAGL
                     FVIILAALLVCGQYFSEKKMKDDGFIN"
     gene            complement(2995..>3083)
                     /locus_tag="WHR98_001836"
     CDS             complement(2995..>3083)
                     /locus_tag="WHR98_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4177 domain-containing protein"
                     /protein_id="HEZ2308471.1"
                     /translation="VTMEKDLRRMLLFFKREAYVVILERDRV"
BASE COUNT          739 a          753 c          882 g          709 t
ORIGIN      
        1 tgatttttgt taatccacta taaaacacag ccgaaaaata aaaaaacaca gagaatgagt
       61 tttcttttaa aatacaacat tttttaacat atcacaacat aaggaagaat tatggcgttc
      121 ggcaaatcct tatttcatgc gatcggccgc gtcagcctgg tcaggcagat tgccgccggt
      181 ttggcgttgg gtatcgtaat cggttcggtt tccccgcaac tgggcttggc ggcaggcttg
      241 ttcggcagcc tgtttgtcgg cgcgctcaaa gcggtcgcgc cggttttggt atttattttg
      301 gtggcggcca caatcgcgca gcaccaaaaa ggcaacaagg cgcatatcag gccgattatc
      361 atcctttacc tcatcggtac gttttccgca gccctgaccg ccgtcatcgc cggtatggtt
      421 ttcccgacgc acattgtttt ggcgggcgcg ggcgatgtgt ccgccgcgcc gccttccggc
      481 attgtggaag tattgaaatc gctgctgatg aacctggtcg ccaacccgat taacgcgatt
      541 gccaatgcca actatatcgg cattttggct tgggctttgg ttttgggcgc ggcgttgcgg
      601 aatcacggtt cggacgttac gcggcaggtc gttgccgatt tggcggaagc ggtttccacc
      661 gtcgtgaaat ggattatccg ttttgcccct ttgggcattt tcgggctggt gtcgtccaca
      721 atcgcggaga cgggtttcgg cgcgctggcg gggtacgcga agctgcttgc agtgctgttg
      781 ggctgtatgg cgtttatcgc gctggcggtc aatcccgcca tcgtgtggtg gaaaatccgc
      841 cgcaaccctt atccgctggt gttcacctgc ctgcgcgaaa gcggcgtgta tgccttcttt
      901 acccgttctt ccgccgccaa tatccccgtg aatatggctt tggcgaaaaa actggggctg
      961 cacgaagaca cttattcgat ttccatcccg ttgggggcga ccgtcaatat gggcggcgcg
     1021 gcgattacga ttaccgtttt ggctatggcg gcggcgcaca ctcaaggcat acaggttgat
     1081 tttgccaccg cgctgctgtt gagcctggtg gcgacggtca gcgcgtgcgg cgcgtccggt
     1141 gtggcaggcg gttcgctgct gctgattccg ctggcgtgca gcctgttcgg catcagcaac
     1201 gatgtcgcca tgcaggtggt tgccgtcggc tttatcatcg gcgtgattca ggattcggcg
     1261 gaaacggcgt tgaattcttc aaccgacgtt ttgtttaccg ctgccgccga tttgggccga
     1321 cagagaaacc gggcggaata aaccaagcta tgccgtctga agcccgtttg gcgttcagac
     1381 ggcatatttt tacaatttta tgagcatatg gcggaaacaa taccggctgc cttgaatatg
     1441 aaggagatga tgatgtttaa acgcagtgtg attgcaatgg cttgtattgt tgccctttca
     1501 gcctgtgggg gcggcggtgg cggatcgcct gatgttaagt cggcggacac gccgtcaaaa
     1561 ccgaccgctc ctgttgttgc tgaaaaagag acagaggcaa aagaagatgc gccacaggca
     1621 ggttctcaag gacagggcgc gccatccaca caaggcagcc aagatatggc ggcagtttcg
     1681 gcggaaaata caggcaatgg cggtgcggca acaacggaca accccaaaaa tgaagatgag
     1741 ggatcgcaaa atgatatgcc gcaaaatgcc gccgaatccg caaatcaaac agggaacaac
     1801 caacccgccg gttctcaaaa tcctgcccct tcaaccaatc ctaacgccac gaatggcggc
     1861 ggcgattttg gaaggacgaa cgtgggcaat tctgttgtga ttgacgggcc gtcgcaaaat
     1921 ataacgttga cccattgtaa aggcgattct tgtactggtg ataatctatt aagcgaagaa
     1981 gcaccgtcaa gatcagaatt tgaatcgtta aatgattctg ggcgaattga taaatataaa
     2041 aaagatggac aggataaatt tactaatttg gttgcgacaa aagttgaaaa gaaaggattg
     2101 aataaatata tcatcttcta tacggacaaa ccacctactc gttctgcacg gtcgaggagg
     2161 tcgcttccga ccgagatgcc gctgattccc gtcaatcagg cggatacgct gattatcgat
     2221 ggggaagcgg tcagcctgac ggggcatttc ggcaatatct tcgcgccaga agggaattac
     2281 cggtatctga cttacggggc ggaaaaattg cccggcggat cgtatgccct ccgtgtgcaa
     2341 ggcgaaccgg caaaaggcga aatgcttgct ggcacggccg tgtacaacgg cgaagtgctg
     2401 catttccata cggaaaacgg ccgtccgtcc ccgttcagag gcaggtttgc cgcaaaagtc
     2461 gatttcggca gcaaatctgt ggacggcatt atcgacagcg gcgatgattt gcatatgggt
     2521 acgcaaaaat tcaaagccgc catcgatgga aacggcttta aggggacttg gacggaaaat
     2581 ggcagcgggg atgtttccgg aaagttttac ggcccggccg gcgaggaagt ggcgggaaaa
     2641 tacagctatc gcccgacaga tgcggaaaag ggcggattcg gcgtgtttgc cggcaaaaaa
     2701 gagcaggatt gatgttgatg ccgtctgaag cgggggcgtt cagacggcat tgtgatgttt
     2761 ggggtggggt ccggttcaag tccgcatcag ttgataaacc cgtcgtcttt cattttcttt
     2821 tcggaaaaat actggccgca taccagcagg gcggcgagga tgatgacaaa cagccccgcc
     2881 atagtcagtg tgattttgaa gaacaattcc gcttcgagaa aagaaaacca aagttgaaca
     2941 atcagcagca gcacccagcc ggcaaacagt ccgagacagg cataaacgcc gagcttaaac
     3001 acgatcccgc tccaaaatga cgacgtaggc ctcgcgtttg aaaaacagca gcatacggcg
     3061 caaatctttt tccatcgtta cga
//
LOCUS       DAWGNT010000188         3080 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.188, whole genome shotgun sequence.
ACCESSION   DAWGNT010000188 DAWGNT010000000
VERSION     DAWGNT010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3080
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.188"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            110..2878
                     /locus_tag="WHR98_001837"
     CDS             110..2878
                     /locus_tag="WHR98_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEZ2308472.1"
                     /translation="MRSSFRLKPICFYLMGVMLYHHSYAEDAGRAGSEAQIQVLEDVH
                     VKAKRVPKDKKVFTDARAVSTRQDIFKSSENLDNIVRSIPGAFTQQDKSSGIVSLNIR
                     GDSGFGRVNTMVDGITQTFYSTSTDAGRAGGSSQFGASVDSNFIAGLDVVKGSFSGSA
                     GINSLAGSANLRTLGVDDVVQGNNTYGLLLKGLTGTNSTKGNAMAAIGARKWLESGAS
                     VGVLYGHSRRSVAQNYRVGGGGQHIGNFGAEYLERRKQRYFVQEGALKFNSDSGKWER
                     DLQRQQWKYSWYKKYENPQELQKYIEDHDKSWRENLAPQYDITPIDPSSLKQQSAGNL
                     FKLEYDGVFNKYTAQFRDLNTKIGSRKIINRNYQFNYGLSLNSYTNLNLTAAYNSGRQ
                     KYPKGSKFTGWGLLKDFETYNNAKILDLNNTATFRLPRETELQTTLGFNYFHNEYGKN
                     RFPEELGLFFDGPDQDNGLYSYLGRFKGDKGLLPQKSTIVQPAGSQYFNTFYFDAALK
                     KDIYRLNYSTNTVGYRFGGEYTGYYSSEGEFKRAFGENSPTYREHCNPSCGLYEPVLK
                     KYGKKRANNHSVSISADFGDYFMPFASYSRTHRMPNIQEMYFSQIGDSGVHTALKPER
                     ANTWQFGFNTYKKGLLKQDDTLGLKLVGYRSRIDNYIHNVYGKWWDLNGDIPSWVSST
                     GLAYTIQHRNFKDKVHKHGFELELNYDYGRFFTNLSYAYQKSTQPTNFSDASESPNNA
                     SKEDQLKQGYGLSRVSALPRDYGRLEVGTRWLGNKLTLGGAMRYFGKSIRATAEERYI
                     DGTNGGNTSNVRQLGKRSIKQTETLARQPLIFDFYAAYEPKKNLIFRAEVKNLFDRRY
                     IDPLDAGNDAATQRYYSSFDPKDKDEEVTCNADKTLCNGKYGGTSKSVLTNFARGRTF
                     LMTMSYKF"
     gene            2908..>3080
                     /locus_tag="WHR98_001838"
     CDS             2908..>3080
                     /locus_tag="WHR98_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308473.1"
                     /translation="MPSESPSDGICFPKRIILPQAYANPFYRIGNSKKNPFHSHAGKP
                     VDFGYFWLFRVIY"
BASE COUNT          866 a          766 c          751 g          697 t
ORIGIN      
        1 attgaaatct tcagatggta tatcgaattt acacttttta atgtttatgc cgcctaaaaa
       61 aatgctaata tatttcttaa ttgtctgact gtttattgtt gaggaaaata tgagatcttc
      121 tttccggttg aagccgattt gtttttacct tatgggtgtt atgctatatc atcatagtta
      181 tgccgaagat gcagggcgcg cgggcagcga ggcgcagata caggttttgg aagatgtgca
      241 cgtcaaggcg aagcgcgtac cgaaagacaa aaaagtgttt accgatgcgc gtgccgtatc
      301 gacccgtcag gatatattca aatccagcga aaacctcgac aacatcgtac gcagcatccc
      361 cggtgcgttt acacagcaag ataaaagctc gggcattgtg tctttgaata ttcgcggcga
      421 cagcgggttc gggcgggtca atacgatggt ggacggcatc acgcagacct tttattcgac
      481 ttctaccgat gcgggcaggg caggcggttc atctcaattc ggtgcatctg tcgacagcaa
      541 ttttattgcc ggactggatg tcgtcaaagg cagcttcagc ggctcggcag gcatcaacag
      601 ccttgccggt tcggcgaatc tgcggacttt aggcgtggat gacgtcgttc agggcaataa
      661 tacctacggc ctgctgctaa aaggtctgac cggcaccaat tcaaccaaag gtaatgcgat
      721 ggcggcgata ggtgcgcgca aatggctgga aagcggagca tctgtcggtg tgctttacgg
      781 gcacagcagg cgcagcgtgg cgcaaaatta ccgcgtgggc ggcggcgggc agcacatcgg
      841 aaattttggc gcggaatatc tggaacggcg caagcagcga tattttgtac aagagggtgc
      901 tttgaaattc aattccgaca gcggaaaatg ggagcgggat ttacaaaggc aacagtggaa
      961 atactcgtgg tataaaaaat acgaaaaccc ccaagaactg caaaaataca tcgaagacca
     1021 tgataaaagc tggcgggaaa acctggcgcc gcaatacgac atcaccccca tcgatccgtc
     1081 cagcctgaag cagcagtcgg caggcaatct gtttaaattg gaatacgacg gcgtattcaa
     1141 taaatacacg gcgcaatttc gcgatttaaa caccaaaatc ggcagccgca aaatcatcaa
     1201 ccgcaattat caattcaatt acggtttgtc tttgaactcg tataccaacc tcaatctgac
     1261 cgcagcctac aattcgggca ggcagaaata tccgaaaggg tcgaagttta caggctgggg
     1321 gcttttaaag gattttgaaa cctacaacaa cgcaaaaatc ctcgacctca acaacaccgc
     1381 caccttccgg ctgccccgcg aaaccgagtt gcaaaccact ttgggcttca attatttcca
     1441 caacgaatac ggcaaaaacc gctttcctga agaattgggg ctgtttttcg acggtcctga
     1501 tcaggacaac gggctttatt cctatttagg gcggtttaag ggcgataaag ggctgctgcc
     1561 ccaaaaatca accatcgtcc aaccggccgg cagccaatat ttcaacacgt tctacttcga
     1621 tgccgcgctc aaaaaagaca tttaccgctt aaactacagc accaataccg tcggctaccg
     1681 tttcggcggc gaatatacgg gctattacag ctcggaaggc gaatttaagc gggcattcgg
     1741 agaaaactcg ccgacataca gggaacattg caacccgagc tgcgggcttt atgaacccgt
     1801 attgaaaaaa tacggcaaaa agcgcgccaa caaccattcg gtcagcatta gtgcggactt
     1861 cggcgattat ttcatgccgt tcgccagcta ttcgcgcaca caccgtatgc ccaacatcca
     1921 agaaatgtat ttttcccaaa tcggcgactc cggcgttcac accgccttaa aaccagagcg
     1981 cgcaaacact tggcaatttg gcttcaatac ctataaaaaa ggactgttaa aacaagatga
     2041 tacattagga ttaaaactgg tcggctaccg cagccgcatc gacaactaca tccacaacgt
     2101 ttacgggaaa tggtgggatt tgaacgggga tattccgagc tgggtcagca gcaccgggct
     2161 tgcctacacc atccaacatc gcaatttcaa agacaaagtg cacaaacacg gttttgagtt
     2221 ggagctgaat tacgattatg ggcgtttttt caccaacctt tcttacgcct atcaaaaaag
     2281 cacgcaaccg accaacttca gcgatgcgag cgaatcgccc aacaatgcgt ccaaagaaga
     2341 ccaactcaaa caaggttatg ggttgagcag ggtttccgcc ctgccgcgag attacggacg
     2401 tttggaagtc ggtacgcgct ggttgggcaa caaactgact ttgggcggcg cgatgcgcta
     2461 tttcggcaag agcatccgcg cgacggctga agaacgctat atcgacggca ccaacggggg
     2521 aaataccagc aatgtccggc aactgggcaa gcgttccatc aaacaaaccg aaacccttgc
     2581 ccgccagcct ttgatttttg atttttacgc cgcttacgag ccgaagaaaa accttatttt
     2641 ccgcgccgaa gtcaaaaatc tgttcgacag gcgttatatc gatccgctcg atgcgggcaa
     2701 tgatgcggca acgcagcgtt attacagttc gttcgacccg aaagacaagg acgaagaagt
     2761 aacgtgtaat gctgataaaa cgttgtgcaa cggcaaatac ggcggcacaa gcaaaagcgt
     2821 attgaccaat tttgcacgcg gacgcacctt tttgatgacg atgagctaca agttttaaag
     2881 gcagcccgcg ttttgtagaa aaccgcaatg ccgtctgaaa gcccttcaga cggcatttgt
     2941 ttccccaaac gcatcatcct gccgcaagcc tatgccaatc cgttttatcg catcggcaac
     3001 tcaaagaaaa atccatttca ttcccacgca gggaagccgg ttgatttcgg ttatttttgg
     3061 ttgtttcggg taatttatga
//
LOCUS       DAWGNT010000189         3065 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.189, whole genome shotgun sequence.
ACCESSION   DAWGNT010000189 DAWGNT010000000
VERSION     DAWGNT010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3065
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.189"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(84..308)
                     /locus_tag="WHR98_001839"
     CDS             complement(84..308)
                     /locus_tag="WHR98_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003686929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein SlyX"
                     /protein_id="HEZ2308474.1"
                     /translation="MDAVQELEHRITELEIQSALQEDVIAGLNAMVAELRQTLDLQQA
                     QLRLLYQKMQDRNPDAQEPYSLRDEIPPHY"
     gene            complement(309..1697)
                     /locus_tag="WHR98_001840"
     CDS             complement(309..1697)
                     /locus_tag="WHR98_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HEZ2308475.1"
                     /translation="MNAVVVAVIVMLVLSLSRVHVVLSLTVGAFVGGAVAGMPLQNIA
                     DAAGQVSQAGIIPVFNKGLEGGAKIALSYAMLGAFAMAITHSGLPQQLAGAVVRKLNR
                     GGMPDSVRSGEGAVKWLLLSIILVMGMMSQNIIPIHIAFIPMIVPPLLLVFNRLKIDR
                     RLIACVITFGLVTTYMFLPYGFGAIFLNEILLGNIHSAAPQLDVKNINVMAAMAIPAL
                     GMLAGLLLAFVHYRKPRLYQSNNADTAGNADAANRPQPSAYRSLAAAAAIAVCFAIQL
                     MYEDSLVLGAMLGFAVFMMLGVINRDKANDVFGEGIKMMAMVGFIMIAAQGFAAVMNA
                     TGHIQPLVESSMAIFGNSKGMAALAMLVVGLLVTMGIGSSFSTLPIIAAIYVPLCVGL
                     GFSPLATVAIVGTAGALGDAGSPASDSTLGPTMGLNADGQHDHIRDSVIPTFIHYNIP
                     LLIAGWIAAMVL"
     gene            complement(1783..2604)
                     /gene="prmC"
                     /locus_tag="WHR98_001841"
     CDS             complement(1783..2604)
                     /gene="prmC"
                     /locus_tag="WHR98_001841"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEZ2308476.1"
                     /translation="MTFDKWLGLSKLPKNEARMLLQYVSEYTRVQLLTRGGEEMPDEV
                     RQRADRLAQRRLNGEPVAYILGVREFYGRRFTVNPSVLIPRPETEHLVEAVLARLPEN
                     GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWF
                     DTDMPSEGKWDIIVSNPPYIENGDKHLSQGDLRFEPQIALTDFSDGLSCIRTLAQGAP
                     DRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMKHLK"
     gene            complement(2611..3054)
                     /locus_tag="WHR98_001842"
                     /pseudo
     CDS             complement(2611..3054)
                     /locus_tag="WHR98_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238425.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          755 a          950 c          747 g          613 t
ORIGIN      
        1 ttaatccact atatatctta ggtttgcatc ggcaaaatat tcaaacacag ccttttttaa
       61 ggaaatccgg atacggcggc gcatcaataa tgcggcggaa tctcgtcgcg cagggaatac
      121 ggctcttgcg cgtcgggatt cctgtcctgc attttttgat acagcagcct caactgagcc
      181 tgctgcaaat ccagcgtctg ccgcaattcc gccaccatcg cgttcaggcc ggcgattacg
      241 tcctcctgaa gcgcggattg gatttccagc tctgtgatgc ggtgttccaa ctcttgaacc
      301 gcgtccattt acagcaccat cgcggcaatc cagccggcaa tcagcagcgg gatattgtag
      361 tggatgaagg tcgggataac ggaatcgcgg atgtggtcgt gctgcccgtc ggcgttcagc
      421 cccatcgtcg ggcccagcgt ggaatcggac gcaggcgaac cggcatcgcc caacgccccc
      481 gccgtgccga caatggcgac ggtggcaagc ggcgaaaaac ccaaaccgac acacaaaggc
      541 acataaatcg cggcaataat cggcaaagtg gaaaaggacg aaccgatgcc catcgttacc
      601 aaaagcccca ccaccagcat cgccaacgcc gccatacctt tgctgttgcc gaatatcgcc
      661 atactgcttt ccaccagcgg ctgaatatgc ccggtcgcat tcatcacggc ggcaaaaccc
      721 tgcgcggcaa tcataatgaa gccaaccatc gccatcatct tgatgccttc gccgaatacg
      781 tcgtttgcct tgtcgcggtt gatgacgccc aacatcataa atacggcgaa accgagcatc
      841 gcgcccaaca ccagcgagtc ttcatacatc aactggatgg caaagcatac ggcaatggcg
      901 gcggcggcgg ccaggctgcg gtaggcggac ggctgcggac ggtttgccgc atcggcgttg
      961 cccgccgtat cggcattgtt gctttggtac aggcgcggtt tgcggtaatg gacaaacgcc
     1021 agcaggagtc cggccagcat tcccaacgcg ggaatcgcca ttgccgccat tacgttgatg
     1081 tttttcacat caagctgcgg cgcggcggaa tggatgttgc ccaacaggat ttcattcaaa
     1141 aaaatcgcgc cgaagccgta aggcaggaac atataagtcg taaccagccc gaaagtgatg
     1201 acgcacgcaa tcaggcggcg gtcgattttc aggcggttga acaccaaaag cagcggcgga
     1261 acaatcatcg ggataaaggc gatgtggatg gggatgatgt tctgactcat catgcccatc
     1321 acaaggatga tggaaagcag cagccatttg accgcgccct cgcccgaacg cacgctgtcg
     1381 ggcataccgc cccggttcag cttgcggacg accgcgccgg caagctgctg cggcaggccg
     1441 gaatgggtaa tcgccattgc aaacgcgccg agcatcgcat aagaaagcgc aatcttcgca
     1501 ccgccttcca aacctttgtt gaacacgggg ataatccccg cctggctgac ctgtcccgcc
     1561 gcatcggcaa tgttttgcag cggcataccc gccaccgcgc cgccgacaaa cgcgccgacc
     1621 gtcaggctca ataccacgtg cacgcgcgac agcgacagca ccagcataac gattacggca
     1681 actacgactg cattcattgt ttatcgctcc aaacctataa atgtttacat atcgaaacac
     1741 atcataaccc aataacggga aacccgccaa ttttgcaaac aattatttca aatgcttcat
     1801 atacttcccc agcgtaaccc tgtccaaacc cgccaaatcc ggcagggttt ccactcctga
     1861 aaaaccattc tccgccaaca cgccgcgcac cgccgcgccc tgatcgaaac cgtgttccag
     1921 caataaaaaa ccgccttccg ccaaacggtc gggcgcgcct tgcgccaagg tacggatgca
     1981 gcttaggccg tctgaaaagt cggtcagcgc gatttgcggc tcaaaccgca aatcgccttg
     2041 cgacaaatgt ttatcgccgt tttcgatata gggcgggttg gacacgatga tgtcccattt
     2101 cccttcagac ggcatatcgg tgtcgaacca cgaaccgtgt gcaaattcga cccgcgcgcc
     2161 caaatccgcc gcatttttcc gcgccgtttc aagggcgggc gggctgatgt cggatgcgcg
     2221 cacaaacgca tcggggcgtt cgagcgcgac ggttacggca accgcgccgc tgcccgtccc
     2281 caaatcccac acgcgcccgt tttcgggcag gcgcgccaat acggcttcga ccaaatgttc
     2341 ggtttcgggg cgcggaatca gcacgctcgg attgactgta aagcgtctgc cataaaattc
     2401 gcgcacacct aaaatatagg caaccggctc gccgttcaga cggcgttgcg ccagcctgtc
     2461 cgcccgctgt cggacttcgt ccggcatttc ttccccgccc cgcgtcaaca actgcacgcg
     2521 cgtatattcc gaaacatatt gcagcagcat tcttgcttca tttttaggca gttttgacaa
     2581 gcccaaccat ttatcaaacg tcatttttat cccgtctgcc gctgatgcgg cttttctttc
     2641 cttattcttt ccggcaaacg taccgatggt ggcaaccgca aatgcggcat accacaaata
     2701 aaatcctgca ccgtagcgca caatatccga tgtattccct gcttcatcga cgtatacggc
     2761 tttcacactg aaagccacca acgccaagcc ccaaagtgcc gcatggacag gcacgacctt
     2821 cttccgcaac gccagcaaaa caatggccgc caaccaaaca taattcgcat agaccgcaca
     2881 atacctgata tccaaagaag caaatatcga ccccaaaatc aaaacggtca aaccctccat
     2941 gcttccatga ttgcccaaat aaaatgcaac attggataaa gacgctatcc acagggcaac
     3001 cgacaccagc aacatcacca tgggaaaact tgatttccga ttctgttcct gcatggtttt
     3061 atcct
//
LOCUS       DAWGNT010000190         3044 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.190, whole genome shotgun sequence.
ACCESSION   DAWGNT010000190 DAWGNT010000000
VERSION     DAWGNT010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3044
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.190"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(105..2264)
                     /locus_tag="WHR98_001843"
     CDS             complement(105..2264)
                     /locus_tag="WHR98_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003704630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEZ2308477.1"
                     /translation="MNTPLFRLSLLSLTLAAGFAHAAENNAKVVLDTVTVKGDRQGSK
                     IRTNIVTLQQKDESTATDMRELLKEEPSIDFGGGNGTSQFLTLRGMGQNSVDIKVDNA
                     YSDSQILYHQGRFIVDPALVKVVSVQKGAGSASAGIGATNGAIIAKTVDAQDLLKGLD
                     KNWGVRLNSGFASNEGVSYGASVFGKEGNFDGLFSYNRNDEKDYEAGKGFRNVNGGKT
                     VPYSALDKRSYLAKIGTSFGGDDHRIVLSHMKDQHRGIRTVREEFTVTNNSRLTLARQ
                     APAYRETTQSNTNLAYTGKDLGFVEKLDANAYVLEKKRYSADDKDNGYAGNVKGPNHT
                     RITTRGMNFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNSKFSIPTTEKKNGQDVAKP
                     ADQQAKDRKDEALVHSYRLTNPTKTDTGAYIEAIHEINGFTLTGGLRYDRFKVKTHDG
                     KTVSSSNLNPSFGVIWQPHEHWSFSASHNYASRSPRLYDALQTHGKRGIISIADGTKA
                     ERARNTEIGFNYNDGTFAANGSYFWQTIKDALANPQNRHVSAAVREAVNAGYIKNHGY
                     ELGASYRTGGLTAKVGVSHSKPRFYDTHKDKLLSANPEFGAQVGRTWTASLAYRFQNP
                     NLEIGWRGRYVQKAVGSILVAGQKDRNGKLENVVRKGFGVNDVFANWKPLGKDTLNVN
                     LSVNNVFNTFYYPHSQRWTNTLPGVGRDVRLGVNYKF"
BASE COUNT          674 a          685 c          883 g          802 t
ORIGIN      
        1 tgaggcaacg ccgtactggt ttttgttaat ccactatata tcaaattatc agaacagatg
       61 ccgtctgaaa ggctttcaga cggcattttt tcgggatgcg cgttttagaa cttgtagttc
      121 acgcccaagc gtacatcacg tcccacgccc ggcagggtat tggtccagcg ttggctgtgc
      181 ggatagtaga acgtgttgaa cacgttgtta accgaaagat taacattgag cgtgtctttg
      241 cccagcggtt tccagttggc gaagacatcg ttcacaccga aacctttgcg tacaacgttt
      301 tccaatttgc cgttgcggtc tttttgacct gccaccaata tcgaacccac ggctttttga
      361 acataacggc cgcgccagcc gatttccaga ttcggatttt ggaagcggta ggcaagggag
      421 gccgtccaag tgcggccgac ttgtgcgcca aattcaggat tcgcgctcaa cagcttgtct
      481 ttgtgcgtat cgtaaaagcg cggtttgctg tggcttacgc cgactttggc agtcaggccg
      541 ccggtgcggt aggacgcgcc caattcgtaa ccgtggtttt tgatgtaacc ggcattgacg
      601 gcttcacgga cggcggcaga gacgtggcgg ttttgcggat tggcaagcgc gtctttgatg
      661 gtttgccaga agtagctgcc gttggcggca aacgtgccgt cgttgtagtt gaagccgatt
      721 tcggtattgc gcgcgcgttc ggctttggtg ccgtcggcaa tcgagatgat gccgcgcttg
      781 ccgtgggttt gcagcgcgtc atacaggcgc gggctacggc tggcgtagtt gtggctcgcg
      841 ctgaagctcc agtgttcgtg cggctgccaa atcacgccga aactcgggtt aaggttgctg
      901 cttgaaacgg ttttgccgtc gtgggttttc accttgaagc ggtcgtaacg cagcccgccg
      961 gtcagggtaa agccgttaat ttcgtgaatg gcttcgatat acgcgccggt atcggttttg
     1021 gtcgggttgg tcagacggta ggaatggaca agggcttcgt ctttgcggtc tttggcttgt
     1081 tggtctgctg gtttagcaac atcttgaccg tttttctttt ctgtcgtcgg gatggagaat
     1141 ttcgagttca aaaacgcttg cggtttgatt tcctgatggc ggtagttgat accgtatttc
     1201 aacagggttt gttcggcaag gcggctgtcg aagttgaagt tcataccccg agtggtgatt
     1261 cgggtatggt tggggccttt tacattgcct gcgtagccgt tatctttgtc atcggcggaa
     1321 tagcgtttct tttccaacac ataggcgttg gcatccagtt tttcgacaaa gcccaaatct
     1381 ttgccggtgt acgccaagtt ggtgttggat tgagtggttt cgcggtaagc aggtgcttgg
     1441 cgtgctaagg tcagacgtga gttattagtg acggtaaatt cttcacgcac agtgcggatg
     1501 ccccggtgtt ggtctttcat atggctcaac acgatgcggt ggtcgtcgcc gccgaagctt
     1561 gttccgattt tggcgaggta gctgcgtttg tccagcgcgc tgtacggtac ggttttgccg
     1621 ccgttgacat tgcggaaacc tttgccggct tcgtaatctt tttcatcgtt gcggttgtaa
     1681 gagaacaagc cgtcgaagtt gccctctttt ccgaatacgc ttgcgccgta gcttacgcct
     1741 tcgttgctgg caaagccgct gttgaggcgc acgccccagt ttttatccaa gcctttgagc
     1801 aggtcttggg catcgacggt tttggcgata atcgcgccgt tggtcgcgcc gataccggca
     1861 gaggcggaac ccgcgccttt ttgtacggaa acgactttaa ccaaagcggg atcgacaata
     1921 aatctgcctt ggtggtaaag gatttggctg tcggaatagg cgttgtccac cttgatgtcg
     1981 acagagttct gacccatgcc gcgcagcgtc aggaattggg acgtgccgtt gccgccgccg
     2041 aaatcgatgg agggctcttc ttttaagagt tcgcgcatat cggttgcggt gctttcgtct
     2101 ttttgttgaa gcgtaacgat gttggtacgg attttgctgc cttggcggtc gccttttaca
     2161 gtaacggtat ccagtacgac cttggcatta ttttctgccg cgtgggcaaa acctgccgcc
     2221 agggtaagcg agagcaggct gagacggaac aatggggtat tcattcaatc gtcctcttga
     2281 gtatatgaag ggaagttaag ccaaaccgtt aaggtttggc aggataagaa aaataataat
     2341 tatttttgtt tatattaacg agagggggga tttgtgtaaa gctgattatc gtttttattt
     2401 gcgaagtgtt gttttttgtt gacaggtttt gtcggaaatg tatagtggac taacaaaaat
     2461 caggataagg cgacgaagcc gcagacagta cagatagtac ggcaaggcga ggcaacgctg
     2521 tactggtttt tgttagtcca ctataaaaaa cggcggaaat atagtggatt aacaaatgcg
     2581 ggaatgacga aaagcaacct ttccgcgtca ttcccgcgaa agcgggaatc tagaacccct
     2641 aacgcggcag gaatctatcg gaaatgactg aaaccgaaca gactggattc ccgcctgcgc
     2701 gggaatgacg aagcctgtgc gggaatgacg aggcctgcgc gggaatgacg aaaagcaacc
     2761 tttccgcgtc cttcccgcga aagcgggaat ctaggaactc aaagctgcaa gaatttatca
     2821 gaaacaactg gaactcaaaa aaactagatt cccgcctgcg cgggaatgac gaagggttaa
     2881 agaaatgatg agaaacggcg gtaatttatc gggaataacc gaaaacgaac ggaaatcagg
     2941 acaaggcgac gaagccgcag acagtacaaa taggacggaa ccgattcact tggtgcttga
     3001 gcaccttaga gaatcgttct ctttgagcta aggcgaggca acga
//
LOCUS       DAWGNT010000191         3042 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.191, whole genome shotgun sequence.
ACCESSION   DAWGNT010000191 DAWGNT010000000
VERSION     DAWGNT010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.191"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            291..896
                     /locus_tag="WHR98_001844"
     CDS             291..896
                     /locus_tag="WHR98_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HEZ2308478.1"
                     /translation="MNTDFQNILKQLGKQAQKEAAEKQAAEKNKQKQEQDFDFSQAVG
                     QVSPLKNRQQYYAPPDKTPIKVRPKDNRADEENYFYIGSTYNDPPASFSKNGQGKNDI
                     QRLKNGYYPVVTDVDLHGYTQEEAQKVLNEFIAFTQKRGVCGEIIHGSGLGSKGYKPV
                     LKNMTRNWLMQHPDVLAYAEPREGNDGCVRILLKRKLRQQD"
     gene            959..1321
                     /gene="ssrA"
                     /locus_tag="WHR98_001845"
     tmRNA           959..1321
                     /gene="ssrA"
                     /locus_tag="WHR98_001845"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(1640..2389)
                     /locus_tag="WHR98_001846"
     CDS             complement(1640..2389)
                     /locus_tag="WHR98_001846"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HEZ2308479.1"
                     /translation="MPSVELLLEIVGLPRGTFYYQLAVQSAEDKYADLKQHIHDIYRR
                     HKGRYGYRRIAAAILHAGTPVNHKKVSRLMAKTGLKAVIRRRKYRSFKGEVGKIAPNI
                     LRRCFHAEKPNEKWVTDVTEFNVGGEKIYLSPIMDLFNGEIVSYRIQIRPTFDLAGEI
                     LKGAPEKPGSSEKPILHSDQGWQYQMFFYSGLNLNQDKAMKPQTVQIVRQGEATPYWF
                     KFNPLYNNDRIKLKLKGLSLVQYRIQSLKAA"
     gene            complement(2394..2804)
                     /locus_tag="WHR98_001847"
     CDS             complement(2394..2804)
                     /locus_tag="WHR98_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein tyrosine phosphatase"
                     /protein_id="HEZ2308480.1"
                     /translation="MIEFVRAKKRLLWAFVLLLVWTCGYRYAADKAEAEQTALIATYR
                     HSSMVAAEQYALQLKKAQDERQRWYDFSQKQGRKPVKKQYPPQTKKAGYLKTKEELLA
                     ELACLTAEMAALKKPDALIHGKEVRQKERNSSQG"
     gene            complement(2801..3031)
                     /locus_tag="WHR98_001848"
     CDS             complement(2801..3031)
                     /locus_tag="WHR98_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308481.1"
                     /translation="MVSNPATGKISHTKLWANVAAAAMTWKFVQAADAPEWLWWAYGA
                     MVGGYALIKRGIAVVPQLAEVKKSANQEGGRQ"
BASE COUNT          810 a          822 c          657 g          753 t
ORIGIN      
        1 atcagatttc cgtgtttcgc gtttccggca attcaagatt ggcaaaacac gtcagcctgc
       61 ttcgcaaggc aggtttttaa aactttatca ggcgttcggg catatcggtt cgaccggtcc
      121 gcatttccgg caatcaacac tgccgacggt tgccgcattt ctttttgata tacaatcaca
      181 ctttcaaaaa acatacgcag gcaacaaaat catcctcccc cgattggcaa acattccggc
      241 aaattaaaac cccgcccgaa acagccatcg gacaaataac aggaaaaaat atgaataccg
      301 acttccaaaa catcctcaaa caactgggca aacaagccca aaaagaagcg gcagaaaaac
      361 aggcagccga aaaaaacaag caaaaacaag aacaggattt cgatttttca caagcagtcg
      421 gacaagtctc cccattaaaa aaccggcagc aatattatgc gccgcccgac aaaaccccca
      481 tcaaagtccg tcccaaagac aaccgcgccg acgaagaaaa ctacttctac atcggcagca
      541 catacaacga cccgcccgcc agcttcagca aaaacggaca gggaaaaaac gacatccaac
      601 gcctgaaaaa cggatactat cccgtcgtta ccgatgtcga cctgcacggc tacacacagg
      661 aagaagccca aaaagtcctc aacgaattca tcgcattcac ccaaaaacgc ggcgtatgcg
      721 gcgaaatcat ccacggcagc ggattaggtt ccaaaggcta caaacccgtt ctgaaaaata
      781 tgacccgaaa ctggctgatg caacaccccg acgtactcgc ctacgccgaa ccccgggaag
      841 gcaacgacgg ctgcgtccgc atcctgctca aacgcaaatt aaggcagcaa gactgacaaa
      901 tttctccgac agacttggca gcaccgcaca atatccgtat aatttgcaaa ccatttctgg
      961 gggcgacctt ggtttcgacg ggggttgcga agcagatgcg ggcataccgg ggtctcagat
     1021 tcccgtaaaa cactgaattc aaatagtcgc aaacgacgaa acttacgctt tagccgctta
     1081 aggctagccg ttgcagcagt cggtcaatgg gctgtgtggc gaaagccacc gcaacgtcat
     1141 cttacattga ctggtttcct accgggttac ttggcaggaa atgagattta aggtaactgg
     1201 tttccaaaag gcctgttggt cggcatgatg gaaataagat tttcaaatag acacaactaa
     1261 gtatgtagaa cgctttgtag aggactttcg gacgggggtt cgattccccc cgcctccacc
     1321 ataccctatt tccagcagca tcctgcaaca caaaaaagcc ttgaacttca acagtttcaa
     1381 ggcttttttg ttgccttgaa tatgctggcg tatgcttgag ttttcgccat ttatggggta
     1441 acttttgggg taacttttca cgaattaccc caaaaaacgc cttaaaaatg caaaagtcat
     1501 cacgcatttt tttaaaaagg ttacccaaaa cttaaatgta atcctttatt tataagcttg
     1561 cagctttcca aacaagttac ccccaaacgg ataaaaaaat gccgaagccg aactgacccc
     1621 aaaaagtcgg acagtttaat caagcggctt tcagggactg aattctgtac tgaacaaggc
     1681 tcagcccttt taatttcaac ttgattctat cgttgttgta tagtggatta aatttaaacc
     1741 agtacggcgt tgcctcgcct tgccgtacta tttgtactgt ctgcggcttc atcgccttgt
     1801 cctgatttaa atttaatcca ctataaaaaa acatctgata ttgccaacct tgatccgaat
     1861 gcagtatcgg cttttcagac gatcccggtt tctccggcgc acctttcagt atctcgccgg
     1921 ccaaatcgaa agtcgggcgg atttgaatac ggtaactgac gatttccccg ttaaacaaat
     1981 ccataatcgg agaaaggtat atcttttctc cgcctacatt gaactcggta acgtccgtta
     2041 cccatttctc attcggcttt tctgcatgga aacagcgtcg caggatattc ggcgcaattt
     2101 tgccgacttc tcctttgaac gagcggtatt tgcgccgccg tatcactgcc ttcagccccg
     2161 tcttcgccat cagacggctg actttcttgt gattgaccgg tgttcctgca tgaaggatgg
     2221 ctgctgcaat cctccggtag ccgtatcttc ccttatgtcg tcgataaata tcatggatat
     2281 gctgtttcaa atcggcatat ttgtcttctg ccgattggac ggccaattgg taataaaagg
     2341 tgccgcgtgg cagtccgaca atctccaaca gcagttcaac ggatggcatt gccttaaccc
     2401 tgcgacgagt tgcgttcttt ctgccgcact tctttcccat ggattaaggc atcgggcttt
     2461 tttagggcag ccatttccgc tgtaaggcaa gccaattccg caagcagttc ttccttggtt
     2521 ttcagatagc cggctttttt cgtttgcggc ggatactgtt ttttcacggg ctttcttcct
     2581 tgtttttggg aaaagtcgta ccaccgctgc ctttcgtcct gcgctttttt aagctgcaag
     2641 gcatattgtt ccgccgcaac catagaagaa tgccgatagg tggcaatcag ggcggtttgt
     2701 tccgcttcgg ccttgtcggc ggcgtatcgg taaccgcacg tccacacaag caaaagcaca
     2761 aatgcccaaa gcagccgttt tttggctcgg acaaattcaa tcattgccgc cccccttcct
     2821 gatttgcgga ttttttgact tccgccaact gcggtacgac ggcgatgccg cgtttgatta
     2881 atgcataccc gccgaccatc gcgccgtatg cccaccaaag ccattcgggc gcgtccgccg
     2941 cctgcacgaa cttccaagtc atggcggctg cggcgacgtt tgcccaaagt ttggtatggc
     3001 tgatttttcc tgtggccgga ttagagacca agccgcccag cc
//
LOCUS       DAWGNT010000192         3035 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.192, whole genome shotgun sequence.
ACCESSION   DAWGNT010000192 DAWGNT010000000
VERSION     DAWGNT010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.192"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            164..1276
                     /gene="nadA"
                     /locus_tag="WHR98_001849"
     CDS             164..1276
                     /gene="nadA"
                     /locus_tag="WHR98_001849"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEZ2308482.1"
                     /translation="MQTAARRSFDYDMPLIQTPTSACQIRQAWAKVADTPDRETAGRL
                     KDEIKALLKEKNAVLVAHYYVDPLIQDLALETGGCVGDSLEMARFGAEHEAGTLVVAG
                     VRFMGESAKILCPEKTVLMPDLEAECSLDLGCPEEAFSAFCDQHPDRTVVVYANTSAA
                     VKARADWVVTSSVALEIVSYLKSRGEKLIWGPDRHLGDYIRRETGADMLLWQGSCIVH
                     NEFKGQELAALKTEHPDAVVLVHPESPQSVIELGDVVGSTSKLLKAAVSRPEKKFIVA
                     TDLGILHEMQKQAPDKQFIAAPTAGNGGSCKSCAFCPWMAMNSLGGIKYALTSGRNEI
                     LLDRKLGEAAKLPLQRMLDFAAGLKKKDVFNGMGPA"
     gene            1328..2836
                     /gene="nadB"
                     /locus_tag="WHR98_001850"
     CDS             1328..2836
                     /gene="nadB"
                     /locus_tag="WHR98_001850"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HEZ2308483.1"
                     /translation="MQTDCDVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASRH
                     AQGGIAAAWSGEDDIEKHVADTLEAGAGLCDEAAVRTILSQGKPAIEWLLAQGVAFDQ
                     NNNDLHLTREGGHTCRRIAHVADYTGEAVMQSLIAQIRRRPNIRVCERQMALDVQTES
                     GAACGLTVLDRRTQETYNIRASHTVLAGGGLGQIYASTTTPPECTGDAIAMAIRAGCT
                     VENLEFIQFHPTGLARPSENGRTFLISEAVRGEGGILTNQSGERFMPHYDRRAELAPR
                     DIVARAIAAEIAKQTQDFVSLDISHQPAAFVRRHFPSIHRHCLSQCGLDITRQAIPVR
                     PVQHYTCGGIQTDPCGRTSLPQLYALGETACTGLHGANRLASNSLLECVVTARLTAQT
                     IADGQAFQTATSQRSSENTSAEADIFSDDLQNAFSRPTLQAFNQRHLGIIRNDTGLRC
                     AIAQLRLWKQNQTEPHTASEYENRNLLECSLAVAQAAYRRRQNIGAHFNSDC"
BASE COUNT          727 a          925 c          821 g          562 t
ORIGIN      
        1 ccaaagcggt ttgtcggaac gaagcgggtc ggttttacgg tatcgcaaac ctgttttcag
       61 acgaccttgc atattatact caagttgagc ataatgtaaa aacagtttga aaaacagacg
      121 gcaaaccttc atgccgtctg aaaaccagct acaaggaaac atcatgcaaa ccgccgcccg
      181 ccgctcgttc gactacgata tgcccctcat ccaaacgccg acttccgcct gccaaatccg
      241 tcaggcgtgg gcgaaggttg ccgacacgcc cgaccgcgag acggcaggtc gtctgaaaga
      301 cgaaatcaag gccttgctga aggagaaaaa cgcggttttg gtggcgcatt attacgttga
      361 tccgctgatt caagatttgg ctttggaaac gggcggatgc gtgggcgatt cgttggagat
      421 ggcgcgtttt ggcgcggaac acgaagccgg tacattggtg gtggcgggtg tgcgattcat
      481 gggcgagagc gcgaaaatcc tctgccctga aaaaacggtg ctgatgcctg atttggaggc
      541 ggaatgttct ttggatttgg gttgcccgga agaagcgttt tcagcgtttt gcgaccaaca
      601 ccccgaccgc acggtggtgg tgtacgccaa cacttccgcc gccgtgaaag cgcgtgccga
      661 ttgggtggta acgtcttcgg tggcgttgga aatcgtgtcg tatctgaaat cgcgcggcga
      721 gaaactgatt tggggacccg accgccacct cggcgactac atccgccgcg aaacgggcgc
      781 ggatatgctg ttgtggcagg gttcgtgcat cgtccacaac gaattcaaag ggcaggagct
      841 ggcggcgttg aagacggaac accccgacgc ggtggtgctg gttcatcccg aatcgccgca
      901 aagcgtcatc gaactgggcg acgtggtcgg ctcgaccagc aaactgctca aagccgccgt
      961 atcgcgtcct gaaaaaaaat tcatcgtggc gaccgatttg ggcatcctgc acgaaatgca
     1021 aaagcaggcg cccgacaaac aatttatcgc cgcgccgacg gcgggcaacg gtggaagctg
     1081 caaaagctgc gcgttctgcc cgtggatggc gatgaattcg ctgggcggca tcaaatacgc
     1141 cctgacaagc ggacgcaacg aaatcctgtt ggacagaaag ctgggcgaag ccgccaaact
     1201 gcctttgcag cgtatgctcg atttcgcggc agggctgaag aaaaaagatg tgttcaacgg
     1261 catgggcccc gcctgatttg ccgtccatat tgccgtttca gacgacctct caaacaagga
     1321 caacaccatg caaaccgatt gcgacgtatt gattgccgga aacgggctgg cggcactgac
     1381 gctcgccctg tcgctgcctg aatcgttccg catcgtcatt ttgtgcaaaa accggctgga
     1441 cgacaccgcc agccgtcatg cgcaaggcgg gattgcggcg gcgtggtcgg gagaggacga
     1501 catcgaaaaa cacgttgccg ataccttgga agcgggcgcg ggcttgtgcg acgaagccgc
     1561 cgtccgcacc atcctgtcgc agggcaaacc ggcaatcgaa tggctgcttg cgcaaggcgt
     1621 ggcgttcgac caaaataata acgacctgca cctgacgcgc gaaggcgggc atacctgccg
     1681 ccgaatcgcc cacgtcgccg attacacggg cgaagccgtc atgcagagcc tgattgccca
     1741 aatacgccgc cgcccgaaca tccgcgtttg cgagcggcag atggcgttgg acgttcaaac
     1801 cgaatcgggt gcagcgtgcg gactgaccgt cctcgaccgc cgaacgcaag aaacctacaa
     1861 catccgtgcc agccataccg tactcgcagg cggcggcttg ggacagattt acgcctccac
     1921 caccacgccg cccgaatgca cgggcgacgc catcgccatg gcgatacgcg caggctgcac
     1981 agtcgagaac ctcgaattta tccaattcca ccccacaggt ttggcaaggc cgtctgaaaa
     2041 cggacgcacc ttcctgattt ccgaagccgt gcgcggcgaa ggcggcatcc tgaccaacca
     2101 atcgggcgaa cggtttatgc cgcattacga ccgccgcgcc gaactcgcac cgcgcgacat
     2161 cgttgcccgc gccatcgcag ccgaaatcgc caaacaaacg caagacttcg tctcgctcga
     2221 catcagccat caacccgcag cgttcgtccg ccggcatttc ccatccatcc atcgacactg
     2281 tttatcccaa tgcggcctag acatcacgcg ccaagccatc cccgtccgcc ccgtgcaaca
     2341 ctacacctgc ggcggcatcc aaaccgaccc ctgcggcaga acctccctgc cgcagctcta
     2401 cgccttaggc gaaaccgcct gcaccggctt gcacggagcc aaccgcctcg ccagcaactc
     2461 cctgctcgaa tgtgtcgtta ccgccagact taccgcccaa accatcgcag acggacaagc
     2521 attccaaacc gcaacgtccc aaaggtcgtc tgaaaacacc tccgccgaag cagacatctt
     2581 ttcagacgac ctccaaaacg cattcagccg ccccaccctg caagcgttca accaacgcca
     2641 tctgggcatc atacgcaacg ataccggcct acgctgcgcc atcgcccagc tgcggctttg
     2701 gaagcaaaac caaaccgaac cgcacaccgc gtccgaatac gaaaaccgta acctgctcga
     2761 atgcagcctc gccgtcgccc aagccgcata caggcggaga cagaacatcg gcgcgcattt
     2821 taatagtgat tgttaaggtt ggctggttag aaaaaatcgt tcaaatgaat tttaatagca
     2881 tggttaagag attggcattc agtttttagg gttgcgtaag ttgggttatc aatctgttct
     2941 aaaagcagaa aggccgagac ctttgcaaaa tcccccaaaa ttccctaaat tcccaccaag
     3001 acatttaggg gattttccat gagcaccttc ttcca
//
LOCUS       DAWGNT010000193         2967 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.193, whole genome shotgun sequence.
ACCESSION   DAWGNT010000193 DAWGNT010000000
VERSION     DAWGNT010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.193"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            121..1665
                     /gene="purF"
                     /locus_tag="WHR98_001851"
     CDS             121..1665
                     /gene="purF"
                     /locus_tag="WHR98_001851"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002251190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEZ2308484.1"
                     /translation="MCGVLGLVSHAPVNQLLYDGLQMLQHRGQDAAGIATAEGGTFHM
                     HKGKGMVREVFRTRNMRDLVGNAGIAHVRYPTAGNAGSSAEAQPFYVSSPFGIVLAHN
                     GNLTNTAELYENVCNKHLRHVNTSSDSEVLLNVFAHELRRGVSKNADPHRLNADNIFN
                     AVAEVHRLVRGAYGVVAMIAGYGMLAFRDPYGIRPLVLGSQTDNEGRKSYAVASESVA
                     FNALAYDLERDIRPGEAVFVGFDGTMIARQCSDRAKLSPCLFEYVYFARPDSVIDGVS
                     VYQSRLDMGVSLAEKIKRELPVDDIDVVMPIPDTSRPSAMELAVHLDKPYREGLIKNR
                     YIGRTFIMPGQATRKKSVRQKLSPMETEFAGKSVLLVDDSIVRGTTSREIVEMVRAAG
                     ARKVYIASAAPEVRYPNVYGIDMPTREELIANGRSAAEIAAEIGADGIVFQDLGDLEA
                     VVKALNPKIESFDSSCFNGIYQTGDIDDAYLDRLSAEKSGCGGLKIHPSRMEHSISIS
                     DAGDEE"
     gene            1765..2256
                     /gene="greB"
                     /locus_tag="WHR98_001852"
     CDS             1765..2256
                     /gene="greB"
                     /locus_tag="WHR98_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HEZ2308485.1"
                     /translation="MSTETKNYITPAGWQALKNELYQLVNKERPEIVQIVNWAAGNGD
                     RSENGDYLYGKRRMREIDRRIRFLTKRLESAVVVDPELREATDQVFFGATVGLLRGDG
                     REQTVKIVGIDEIDTAQNKISWISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI
                     KID"
     gene            2315..2941
                     /locus_tag="WHR98_001853"
     CDS             2315..2941
                     /locus_tag="WHR98_001853"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEZ2308486.1"
                     /translation="MRKIRTKICGITTPEDAAAAAAAGADAVGLVFFQGSSRVVNIAR
                     AKEITAALPPFVSVVALFVNESAQSIRRILAEVPIHIIQFHGDEDDTFCRQFHRPYIK
                     AIRVQTTSDIRNAADRFPDAQALLFDAYHPSEYGGTGHRFDWTLLAEYSGKPWVLAGG
                     LTPENVGEAVRITGAEAVDVSGGVEASKGKKDPAKVAAFIATANRLSR"
BASE COUNT          709 a          906 c          780 g          572 t
ORIGIN      
        1 tatcctccat aaacccgcct atctgtcctt cgctcaaata ttgtcaacaa ttcaggcaaa
       61 aaaccaccgt ttgctttata attccgtttt acccttaaac ctcgaatcgg agaagacgat
      121 atgtgcggcg tattaggttt ggtcagtcat gcacccgtga accagcttct gtacgacggt
      181 ttgcagatgt tgcagcacag ggggcaggat gcggcgggca ttgcaacggc ggaaggcggc
      241 accttccata tgcacaaagg caaagggatg gtgcgcgaag tgttccgcac gcgcaatatg
      301 cgcgatttgg tcggcaacgc cggcatcgcc cacgtccgtt atcccacggc gggcaacgcc
      361 ggcagcagcg cggaggcgca gcctttctac gtcagctcgc ctttcggcat cgttttggcg
      421 cacaacggca acctcaccaa cacggccgaa ctttatgaaa acgtgtgcaa caaacacctg
      481 cgccacgtca acaccagctc cgattccgaa gttttgctca acgtattcgc gcacgaatta
      541 cgccgcggag tctctaaaaa cgccgacccg caccggctca atgccgacaa tattttcaac
      601 gccgttgccg aagtccaccg cctggtgcgc ggcgcatacg gcgtggttgc catgattgcg
      661 ggctacggta tgcttgcctt ccgcgaccct tacggcatcc gcccgctggt attgggttcg
      721 caaaccgaca acgaaggcag gaaatcctat gccgtcgcct ccgaatccgt cgccttcaac
      781 gcgcttgcct acgatttgga acgcgacatc cggccgggcg aagcggtatt tgtcggcttt
      841 gacggcacaa tgattgcccg ccaatgcagc gaccgtgcca aactcagccc ctgccttttt
      901 gaatatgttt attttgcccg ccccgactcc gtaatcgacg gcgtatcggt ttaccaatcg
      961 cgcttggata tgggcgtgtc cttggcggaa aaaatcaaac gcgagctgcc cgtggacgac
     1021 atcgatgtcg tgatgcccat tcccgacacc agccgcccca gcgcgatgga gcttgccgtc
     1081 cacctcgaca aaccctaccg cgagggcttg attaaaaacc gctatatcgg ccgcaccttt
     1141 atcatgcccg gtcaggcgac gcgcaaaaaa tccgtgcgcc aaaaactcag cccgatggaa
     1201 accgaatttg caggcaaaag cgtgttgctg gtggacgact ccatcgtgcg cgggacgacc
     1261 agccgcgaaa tcgtcgaaat ggtacgcgcg gcgggcgcgc gcaaagtcta tatcgcctcc
     1321 gccgcgcccg aagtgcgcta tcccaatgtg tacggcattg atatgcccac gcgcgaagag
     1381 ttgattgcca acgggcgcag cgcggcggaa atcgccgccg aaatcggcgc ggacggcatc
     1441 gtatttcaag acttgggcga tttggaagcc gtcgtcaaag cactcaatcc gaaaatcgaa
     1501 tccttcgatt cgtcctgttt caacggcatt tatcagaccg gcgacatcga tgatgcctac
     1561 ctcgaccgcc tgtctgccga gaaatccggc tgcggcggtc tgaaaatcca cccgagcagg
     1621 atggaacaca gcatcagcat cagcgatgcg ggcgacgaag aataaagctt cccaaaccgc
     1681 gatgccgtct gaaatccgaa cgctgggttt tcagacggca tttcccatat cggcatcaca
     1741 tttcccgttt catccgcaca caatatgagt accgaaacca aaaactacat cacgcccgcc
     1801 ggctggcagg cattgaaaaa cgagctttat caactggtta ataaagaacg ccccgaaatc
     1861 gtccaaatcg tcaactgggc ggcaggcaac ggcgaccgca gcgaaaacgg cgactatctt
     1921 tacggcaaac gccgtatgcg cgaaatcgac cgccgcatcc gtttcctgac caaacgtttg
     1981 gagtctgccg tcgtcgtcga tcccgaattg cgcgaagcga ccgaccaagt gtttttcggc
     2041 gcgacggtcg ggctgttgcg cggcgacggg cgcgagcaaa ccgtcaaaat tgtcggcatc
     2101 gatgaaatcg ataccgcgca aaacaaaatt tcttggattt cgccgttggc gcgttgcctg
     2161 attaaagcgc gcgaaggcga cgaagtggtt ttgaacacgc cggaagggcg tgaggaaatt
     2221 gaaatccttt ctgtcgaata catcaaaatc gactgatcgg gaatgccgtc tgaaacggca
     2281 caaacgcatc gtttcccaaa taaaggaata ccgaatgaga aaaatccgca ccaaaatctg
     2341 cggcatcacc acaccggaag acgcagcggc cgccgcagca gcaggtgcgg atgccgtcgg
     2401 gctggtcttt ttccaaggca gcagccgggt cgtcaatatt gcccgcgcaa aagaaatcac
     2461 cgccgcactg ccgccgtttg tcagcgttgt cgcccttttc gtcaacgaaa gcgcgcaaag
     2521 catccgccgc atccttgccg aagtgccgat acacatcatc caattccacg gcgacgaaga
     2581 cgacacattc tgccgtcagt tccaccgccc ctatatcaag gccattcgtg ttcagacgac
     2641 atcagacatc cgaaacgccg ccgaccgctt ccccgacgct caggcactgc tgttcgatgc
     2701 ctaccatcct tcggaatacg gcggcaccgg acaccgcttc gactggacgc tgctggcgga
     2761 atattcgggc aaaccgtggg tgcttgccgg cgggctgacc cctgaaaacg tcggcgaagc
     2821 cgtccgcatt accggagcgg aagcggtcga tgtatccggc ggcgtggaag cgtctaaagg
     2881 caaaaaagac ccagccaaag tcgccgcctt tatcgcaacc gccaaccgcc tatcccgtta
     2941 aagcaacaaa aattgccgcc ggaatga
//
LOCUS       DAWGNT010000194         2944 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.194, whole genome shotgun sequence.
ACCESSION   DAWGNT010000194 DAWGNT010000000
VERSION     DAWGNT010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2944)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2944)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2944
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.194"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(130..1440)
                     /locus_tag="WHR98_001854"
     CDS             complement(130..1440)
                     /locus_tag="WHR98_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEZ2308487.1"
                     /translation="MTDLFAREPDAPLAERLRPHTLDDVVGQEHLIGEGKPLRVAVEG
                     GKPHSMLLWGPPGVGKTTLARILAQSFNAQFLPVSAVFSGVKDIREAIDKAEIALQQG
                     RATILFVDEVHRFNKAQQDAFLPHVESGLLTFIGATTENPSFEVNPALLSRAQVYVLQ
                     PLSSDDLKKLIAKVLALPEYQEFTIETDAQKLLVNTADGDARRLLNLLEQLLRAADTR
                     RLKNLTAEFLADSLGAQIRRFDKGGESFYNQISALHKSVRGSHPNAALYWFCRMLDGG
                     TDPRYLARRIVRIAWEDIGLADPRAFQIANDAAATFERLGSPEGELALAQAVLYLAAA
                     AKSNAGYKAYNQMRHFVKENASDEVPVHLRNAPTKLMKELGYGREYRYAHDEPNAYSA
                     GESYMPDGLDEPDFYQPVPRGLEIKIGEKLEWLKSLDEEVLKAK"
     gene            1752..2174
                     /locus_tag="WHR98_001855"
     CDS             1752..2174
                     /locus_tag="WHR98_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308488.1"
                     /translation="MEWVSLFSDPQRDDDSLITLKDEKITVKNYIVPWWKKGENFRKL
                     ELITPGKNDNGNLTVNGIYGIQSFADSQLGYTPELLVKSNNDILFKNNLQSVDVKPHS
                     GNIHLDAKGKIQFNLNVPDVDGVQDVASGKKYRQTIVP"
     gene            2260..2944
                     /locus_tag="WHR98_001856"
                     /pseudo
     CDS             2260..2944
                     /locus_tag="WHR98_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244588.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
BASE COUNT          811 a          711 c          704 g          718 t
ORIGIN      
        1 aacttaatcc actataccac gttgtcttta ttggctttat caataaacag gataagacct
       61 gaaaaaaagc cgatacgcct ttttggtgta ccggctttgc catactgttc tgcttcagac
      121 agcattgctt cattttgcct ttaatacttc ttcgtccagc gatttcaacc attccagctt
      181 ttcgccgatt ttgatttcca acccgcgcgg gacgggttgg tagaagtccg gttcgtccaa
      241 gccgtcgggc atatagcttt cgccggcgga gtaggcgttc ggttcgtcgt gggcgtagcg
      301 gtattcgcgt ccgtagccca attccttcat cagcttggtc ggggcgttgc gcaggtggac
      361 gggcacttcg tcgctagcgt tttctttgac gaagtggcgc atttggttgt atgccttgta
      421 gcccgcgttg gatttcgcgg cggcggcaag atacaatacc gcttgcgcca aagccagttc
      481 gccttcgggc gagcctaagc gttcgaaggt ggcggcggca tcgttggcga tttggaaggc
      541 gcgcgggtcg gcaagcccga tgtcttccca agcgatacgc acgatgcggc gggcgaggta
      601 gcgcgggtcg gtgccgccgt cgagcatacg gcagaaccaa tacagcgcgg cgttcggatg
      661 cgaaccgcgc acggatttgt gcagggcgga gatttggttg tagaaactct cgccgccttt
      721 gtcgaaacgg cggatttgcg ccccgagact gtcggcgaga aattcggcgg ttaagttttt
      781 cagacgacgt gtatcggcgg cgcgtaaaag ttgttccaac aaattcaaca atctgcgcgc
      841 atcaccgtcg gcggtattca cgagtaattt ttgcgcatcc gtttcaatcg taaactcttg
      901 gtattcaggc aaagccaata ccttggcaat cagctttttc aggtcgtctg aagacaaggg
      961 ttgcaaaaca tacacctgag cgcggctcaa cagcgcggga ttgacttcaa acgacggatt
     1021 ttccgtcgtc gcaccaataa aggttagcaa accgctttcg acatgcggca aaaacgcgtc
     1081 ctgctgcgcc ttgttgaagc ggtggacttc atcgacaaac aaaatcgtcg cgcgtccctg
     1141 ctgcaaagcg atttcggctt tatcgattgc ctcgcggatg tccttcacgc cggaaaacac
     1201 ggcggaaaca ggcaaaaact gggcattgaa actctgcgcc aaaatccgcg ccaacgtcgt
     1261 cttgcccacg cccggcggcc cccacagcaa catagaatgc ggcttgccgc cttctaccgc
     1321 cacgcgcaaa ggtttacctt cgccgatgag gtgttcctgc cccaccacgt cgtcaagcgt
     1381 atgcggacgc aatcgttcgg caagcggcgc gtcgggttct cgggcaaaca aatcggtcat
     1441 aacggctccg tcaacaggtt ttcaaacaat atgattatac ggcagggaac ggcggcgtgc
     1501 cgcatacgga ttccgcccct ccgtttgcct taagccgata ttaggcgcat actggaaaag
     1561 acgagagact tcacacaata tatccggcac ggagaccgat tccgcatcgg catgacaata
     1621 cccaaatcag cgtttcaatt aaacattaag gagactaaaa tagaaaattt gctttatctg
     1681 ccattgcttt gttgattcaa tcggcattat gttttgaggc ggaagcccat gaatatacta
     1741 atattcaaga gatggaatgg gtgtctttat tttctgatcc gcaaagagac gatgatagtc
     1801 ttataaccct taaagatgaa aaaatcactg taaaaaacta tattgtgcct tggtggaaaa
     1861 aaggtgaaaa ctttagaaaa ttagaactta ttacccctgg taaaaatgat aatggaaatt
     1921 taacggtaaa tggaatttac ggcatccaat cttttgcaga ctctcaattg ggatatacgc
     1981 ctgaattatt ggtaaaaagc aataatgata ttctatttaa aaataatctc caatctgttg
     2041 acgtgaagcc ccattccgga aatatccatt tggatgccaa aggaaaaatt caatttaatt
     2101 tgaatgttcc cgatgttgat ggggtacaag atgtagccag tggaaaaaaa taccgacaaa
     2161 caatagtgcc ttagtgcggt atgtcaacac tatcagcccc ccgatgaaaa tgacaaaggc
     2221 agcatatcct ttcattcaaa aacaggcaat ttgttcaata tgaacgttaa cgttcataaa
     2281 gacacacacc atttcggtat tcacaacctc aacaataccg atgttcatct gactgccgaa
     2341 gacagcgata atgtgattga gattaaaggg gaactcgccg accctatgcc gacaggaaat
     2401 gttgagagta caagtttttt aaggggcatt gaaacggctt ttaaatccaa taccgtatta
     2461 acggggaata acaataaaat atccatcgcc actgagggca agggcttggg attgggcgta
     2521 aatggtctcc agtccaactc cccctattcc ggacgcacga cgggcatttt catcaataat
     2581 caatcaagcg accttaccca accttccctt gatggcatca gcactatcaa gctcaaagcc
     2641 gtcaagggaa ataatgaagt tgatttaaat gtaaaaaacc acgcctccgt aaaaggcatt
     2701 atcgcgtcgc attctgcaaa agcaacgctt gaagccgaag gggacaatat tgtccaggtt
     2761 aaaaatccgg acaccaatac ggctttaatc gatgctttga aaaaacaata ccccaatgct
     2821 tcgaaagaac tatacagggt gggggttcaa tccacgactg gaacagtacg catttcgcca
     2881 aacggcaaaa tcgcattaac ggaattgaaa acttttggaa ttgtacaaaa cggcatttgc
     2941 gtca
//
LOCUS       DAWGNT010000195         2893 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.195, whole genome shotgun sequence.
ACCESSION   DAWGNT010000195 DAWGNT010000000
VERSION     DAWGNT010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2893)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2893)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2893
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.195"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            53..1461
                     /locus_tag="WHR98_001857"
                     /pseudo
     CDS             53..1461
                     /locus_tag="WHR98_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003674669.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
     gene            1583..2299
                     /gene="trmB"
                     /locus_tag="WHR98_001858"
     CDS             1583..2299
                     /gene="trmB"
                     /locus_tag="WHR98_001858"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002235871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEZ2308489.1"
                     /translation="MTDTAENQTPNDRQAGHPRSIRSFVLRQSHMTAAQQRAIDTLWD
                     SFGIDYQATPADLDANFGSNRPKILEIGFGMGTATAEIARRLPETDFLAIDVHGPGVG
                     NLLKLIDENHLENIRVMRHDAVEVVENMLQDGSLDGIHIFFPDPWHKKRHHKRRLIQT
                     PFIAKLLPKLKTGGYIHLATDWEEYAQQMLEVLSSFDSLQNTAADYAPTPDYRPETKF
                     EVRGKRLGHGVWDLVFKRIR"
     gene            2631..>2893
                     /locus_tag="WHR98_001859"
     CDS             2631..>2893
                     /locus_tag="WHR98_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010357745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308490.1"
                     /translation="MTYLKIITISIVLYILLLQINLKMLEKRIDFLVENIDKYYQQYG
                     SYPNNFDFISTKTNFTTESYCDFWDKNIAGYGNCYFVKNDKDYT"
BASE COUNT          882 a          825 c          622 g          564 t
ORIGIN      
        1 ctaacttcat aacacaataa cgatgatttg acaaaacgga aaacgacctg atatgaacaa
       61 tcccgactta ccctatcggc aggccttaga acgcctgtct caaaaacaat ataactttac
      121 cgaagtccgc cgactgctga cagaagcggc ctcggcaggt catcccgccg ccgcattcga
      181 gttggcaaaa cacctgatgg acgcggacag cccctaccaa gaccgcgaac aaggtatgga
      241 aatgctccgc atcgccgccg aacagggaca tccctacgcg cgttacaatc tggcatatat
      301 ccaagaattg gaaggtgcac cccctgaaac cctgaaaccg ctttacagac cgttggcaga
      361 ggaagggctg cctgaagcac aagtccgcct gatgtacctg ctgtatgcgt cccgacattt
      421 tgaagaagcc ctgaaatgaa atgggcaaaa acaagcgcaa aaaacaacaa tccccacggg
      481 caatacctgc tcgcccaata ctgccggtac ggcacaccgc cggattttga aacggcgcac
      541 ctgctctacc gcaaagcggc ggcacaaggc ttggcggcgg cacaatggca gctcggcctt
      601 caataccgtt tcgggcaagg gacgaaagtc gacacggcac aggccgtcaa tcatttgcgc
      661 gccgccgcgc aacaaggata cattcccgcc tacaccccgc ttgccgaact catcctacct
      721 acggctcccg atgaagccgt ttaccggttc caacaggcgg cacaggaaaa tgaccccgat
      781 gcccatgccg cactggccga catctaccta caaggcaaat atcaggaaag aaaccacaaa
      841 cttgccctgc atcatgccga agcagccgca gcagaacgcc atcccgaagg tttgcggata
      901 ctgggcgaca tctgccacta cggtttgggc atagcccccg atacggaaaa agcccggcat
      961 tattaccggc aggcagccga agccggcagc ctttccgcct atcagaaact catatccgac
     1021 agcgcgttaa accatcccga gcaatatggc agcatcaaag attccgccat caagcggcaa
     1081 agggcagaac agctttatca aaaagcccaa gcccttcatt acggattaca atgcgcgccc
     1141 gaatacgcag ccgcgctcaa actctacaca gaagcagcag aactcggcca cagcaaagcc
     1201 caaaccaatc tgggcagcat gcattacttc ggacagggta tgaccgccga ctacaatgaa
     1261 gcacgcaaat ggtttgagca agccgccgcg caaaaagaca gcatggcact ttataacctc
     1321 gcctgcatcc attacaacgg acacggcgtc gagccggaca acgaaaaagc ctaccgctac
     1381 ctacaagaag ccataaacag cggacacgaa caaaaaagct ttctgcaaga actgttgcaa
     1441 cagtggcaaa atgccgtctg aacaccggta catttacccc gcaaaaacga aacaggtata
     1501 atcgcccctt tcccttcccg ccgtccgaac agacatttca cattcagacg gcatcctgat
     1561 tgcacaaccg catgaaagca ttatgacaga caccgccgaa aaccaaacac caaacgaccg
     1621 tcaagccgga cacccccgca gcatccgcag cttcgtcctc cgccaaagcc atatgaccgc
     1681 cgcgcagcaa cgcgccatcg ataccttatg ggacagcttc ggcatcgatt accaagcaac
     1741 accggccgat cttgatgcca atttcggaag caaccggccc aaaatcctcg aaataggctt
     1801 cggtatgggg acggcaaccg cagaaatcgc ccgccgcctg cccgaaaccg acttcctcgc
     1861 catcgacgta cacggtcccg gcgtaggcaa cctgctcaaa ctcatagacg aaaatcattt
     1921 ggaaaacatc cgcgtgatgc ggcacgatgc cgtagaagtt gtcgaaaata tgctgcaaga
     1981 cggctcgctc gacggcatcc acatattctt ccccgacccg tggcacaaaa aacgccacca
     2041 caaacgccgt ctgatacaaa cccccttcat cgccaaacta ctgcccaaac tcaaaaccgg
     2101 cggctatatc cacctggcga cagactggga agaatatgca cagcagatgc ttgaagtcct
     2161 cagtagcttc gacagcctgc aaaatacggc ggcagactac gcccccaccc cggactaccg
     2221 ccccgaaacc aaattcgaag tgcgcggcaa acgcctcggg cacggcgttt gggacttggt
     2281 attcaaacgg atcagataac aaaccgccgg ataaaaaaat gccgtttgaa gcatgtttgc
     2341 ttacagacgg cattttttca agataaagca gcgagtgatg tttcgataca atttttaaaa
     2401 caatggtttg aacggcaaaa cgcgtgtgta ccgcacgcat ccttagtagg ttttatgcac
     2461 atcggtttta aagtttgtgc cgcccgcagg tagtatgtga tagctacgca cgcggttggt
     2521 gtgatgtagg ctacggcttg ctaattattc atcgttatta aacaaagact taggtgtaca
     2581 ttcaggcata gttaacaaaa caactaaacc tctatttact ggaaaataaa atgacttatt
     2641 taaaaataat aacaatcagt atagttttat acattttatt attacaaatt aatctcaaaa
     2701 tgttagaaaa aagaattgat ttcttagtag aaaatataga taaatactac cagcaatatg
     2761 gatcttaccc aaataatttt gattttatat caactaaaac taattttact actgaatcat
     2821 attgtgattt ttgggataaa aatattgcag gatatggtaa ttgttacttc gtaaagaatg
     2881 ataaagacta tac
//
LOCUS       DAWGNT010000196         2875 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.196, whole genome shotgun sequence.
ACCESSION   DAWGNT010000196 DAWGNT010000000
VERSION     DAWGNT010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2875
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.196"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            232..555
                     /locus_tag="WHR98_001860"
     CDS             232..555
                     /locus_tag="WHR98_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003775941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEZ2308491.1"
                     /translation="MQNETINLKQHLAAIKEYWQPEIINRHGFQFRLVKLLGDYGWHT
                     HGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVVPKSVSHRLRSENGCSVVLIELSD
                     PSEAV"
     gene            669..2846
                     /locus_tag="WHR98_001861"
     CDS             669..2846
                     /locus_tag="WHR98_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HEZ2308492.1"
                     /translation="MTRFKYSLLFAALLPVYAQADVSVSDDPKPQESTELPTITVTAD
                     RTASSNDGYTVSGTHTPLGLPMTLREIPQSVSVITSQQMRDQNIKTLDRALLQATGTS
                     RQIYGSDRAGYNYLFARGSRIANYQINGIPVADALADTGNANTAAYERVEVVRGVAGL
                     LDGTGEPSATVNLVRKRPTRKPLFEVRAEAGNRKHFGLDADVSGSLNTEGTLRGRLVS
                     TFGRGDSWRRRERSRDAELYGILEYDIAPQTRVHAGMDYQQAKETADAPLSYAVYDSQ
                     GYATAFGPKDNPATNWANSRHRALNLFAGIEHRFNQDWKLKAEYDYTRSRFRQPYGVA
                     GVLSIDHNTAATDLIPGYWHADPRTHSASVSLIGKYRLFGREHDLIAGINGYKYASNK
                     YGERSIIPNAIPNAYEFSRTGAYPQPSSFAQTIPQYGTRRQIGGYLATRFRAADNLSL
                     ILGGRYSRYRTGSYDSRTQGMTYVSANRFTPYTGIVFDLTGNLSLYGSYSSLFVPQSQ
                     KDEHGSYLKPVTGNNLEAGIKGEWLEGRLNASAAVYRARKNNLATAAGRDPSGNTYYR
                     AANQAKTHGWDIEVGGRITPEWQIQAGYSQSKTRDQDGSRLNPDSVPERSFKLFTAYH
                     FAPEAPSGWTIGAGVRWQGETHTDPATLRIPNPAAKARAAANSRQKAYAVADIMARYR
                     FNPRAELSLNVDNLFNKHYRTQPDRHSYGALRTVNAAFTYRFK"
BASE COUNT          691 a         1018 c          733 g          433 t
ORIGIN      
        1 cgaacggctg aatcaaagat tcagaccgat ggcagtccgc acccgagttt atgcggcaaa
       61 cagcgaggct acggcaaccc gccccctctc cctgtgggag agggttaggg agagggcggt
      121 aagccgcagg cttgcatcaa agtcgataac gctttcgtta caactccgcc cactgaacga
      181 agccaaaacg acaaaccgca tcgtaaacca cccaacccat aggagaaccc catgcaaaac
      241 gaaaccatca acctgaaaca gcaccttgcc gccatcaaag aatactggca gcccgaaatc
      301 atcaaccgcc acgggttcca attccgtttg gtcaaacttt tgggcgatta cggctggcat
      361 acgcacggat acagcgacaa agtgctgttt gccgtggagg gcgacatggc ggtggacttc
      421 gccgacggcg gcagcatgac gatacgcgag ggcgagatgg cggtcgtgcc gaagtcggtg
      481 tcgcaccgcc tgcgttcgga aaacggctgc tcggtggtgc tgattgagtt gtccgacccg
      541 tccgaggccg tctgaaaacg aagtttccga aggaagctga gtttctgcga agctaaaagc
      601 agcctgcacc ttcaatcaat atgccgaaaa tacaacccca ccgcacacca acacacaaag
      661 gaaatcccat gacacgcttc aaatattccc tgctgtttgc cgccctgttg cccgtgtacg
      721 cgcaggccga tgtttctgtt tcagacgacc ccaaaccgca ggaaagcact gaattgccga
      781 ccatcaccgt taccgccgac cgcaccgcga gttccaacga cggctacact gtttccggca
      841 cgcacacccc gctcgggctg cccatgaccc tgcgcgaaat cccgcagagc gtcagcgtca
      901 tcacatcgca acaaatgcgc gaccaaaaca tcaaaacgct cgaccgcgcc ctgttgcagg
      961 cgaccggcac cagccgccag atttacggct ccgaccgcgc gggctacaac tacctgttcg
     1021 cgcgcggcag ccgcatcgcc aactaccaaa tcaacggcat ccccgttgcc gacgcgctgg
     1081 ccgatacggg caatgccaac accgccgcct atgagcgcgt agaagtcgtg cgcggcgtgg
     1141 cggggctgct ggacggcacg ggcgagcctt ccgccaccgt caatctggtg cgcaaacgcc
     1201 cgacccgcaa gccattgttt gaagtccgcg ccgaagcggg caaccgcaaa catttcgggc
     1261 tggacgcgga cgtatcgggc agcctgaaca ccgaaggcac gctgcgcggc cgcctggttt
     1321 ccaccttcgg acgcggcgac tcgtggcggc ggcgcgaacg cagccgcgat gccgaactct
     1381 acggcatttt ggaatacgac atcgcaccgc aaacccgcgt ccacgcaggc atggactacc
     1441 agcaggcgaa agaaaccgcc gacgcgccgc tcagctacgc cgtgtacgac agccaaggtt
     1501 atgccaccgc cttcggcccg aaagacaacc ccgccacaaa ttgggcgaac agccgccacc
     1561 gtgcgctcaa cctgttcgcc ggcatcgaac accgcttcaa ccaagactgg aaactcaaag
     1621 ccgaatacga ctacacccgc agccgcttcc gccagcccta cggcgtagca ggcgtgcttt
     1681 ccatcgacca caacaccgcc gccaccgacc tgattcccgg ttattggcac gccgacccgc
     1741 gcacccacag cgccagcgtg tcattgatcg gcaaataccg cctgttcggc cgcgaacacg
     1801 atttaatcgc gggtatcaac ggttacaaat acgccagcaa caaatacggc gaacgcagca
     1861 tcatccccaa cgccattccc aacgcctacg aattttcccg cacgggtgcc tatccgcagc
     1921 catcatcgtt tgcccaaacc atcccgcaat acggcaccag gcggcaaatc ggcggctatc
     1981 tcgccacccg tttccgcgcc gccgacaacc tttcgctgat actcggcggc agatacagcc
     2041 gttaccgcac cggcagctac gacagccgca cacaaggcat gacctatgtg tccgccaacc
     2101 gtttcacccc ctacacaggc atcgtgttcg acctgaccgg caacctgtct ctttacggct
     2161 cgtacagcag cctgttcgtc ccgcaatcgc aaaaagacga acacggcagc tacctgaaac
     2221 ccgtaaccgg caacaatctg gaagccggca tcaaaggcga atggcttgaa ggccgtctga
     2281 acgcatccgc cgccgtgtac cgcgcccgta aaaacaacct cgccaccgca gcaggacgcg
     2341 acccgagcgg caacacctac taccgcgccg ccaaccaagc caaaacccac ggctgggaca
     2401 tcgaagtcgg cggccgcatc acgcccgaat ggcagataca ggcaggttac agccaaagca
     2461 aaacccgcga ccaagacggc agccgcctga accccgacag cgtacccgaa cgcagcttca
     2521 aactcttcac tgcctaccac tttgcccccg aagcccccag cggctggacc atcggcgcag
     2581 gcgtgcgctg gcagggcgaa acccacaccg accctgccac gctccgcatc cccaaccccg
     2641 ccgccaaagc ccgcgccgcc gccaacagcc gccaaaaagc ctacgccgtc gccgacatca
     2701 tggcgcgtta ccgcttcaat ccgcgcgccg aactgtcgct gaacgtggac aacctgttca
     2761 acaaacacta ccgcacccag cctgaccgcc acagttacgg cgcactgcgg acagtgaacg
     2821 cggcgtttac ctatcggttt aaataaggtc gtctgaaaac ggagtttctg cgaag
//
LOCUS       DAWGNT010000197         2866 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.197, whole genome shotgun sequence.
ACCESSION   DAWGNT010000197 DAWGNT010000000
VERSION     DAWGNT010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.197"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            312..>2866
                     /locus_tag="WHR98_001862"
     CDS             312..>2866
                     /locus_tag="WHR98_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002252549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly/adherence protein PilC"
                     /protein_id="HEZ2308493.1"
                     /translation="MNGQKLPEVKWGNDYNKLAQKSNPRQVNFTTYFSGYKKNTTFSF
                     NNTDEVVAQKNGVTVFGAATYLPPYGKVSGFDEKRLQERGDVLGWIGTTHPGLVGYSY
                     EGNTCSSGDCPDVSYKTQFTFGNQGLKSKVNGKLDIYEDKSRDNSPIYKLPDQPWLGV
                     SFNLSSESVVESKKLKKVESSFNEDVTQNNGAQSPYKDTNLVYTTGDGRNKGNQVHQD
                     KHHAVVFYLNAKLHLLDKKQIKNITQVRELNLGELKTRIEPTNAWKNKRRLTSNVGNW
                     EFKDTGLVSVKLKLPQVKADRCINKSNPNKNSKAPSPALTAPALWFGPVQNGKAEMYS
                     ASVSTYPDSSSSRIFLQNLKRKTDHSKPGRHSLATLNKSDIESKEPSFTGRQTVIRLD
                     GGVQQIKLGKNNNEVTGFNGNSNNATFGIVSEYGVTPEADEWKKVLLPWTVRGSADDN
                     QFRTVNQKSDKYSQRYRIRDNGKHERNLGDIVNSPIVAVGGYLATSANDGMVHIFKQS
                     GGDKRSYNLKLSYIPGTMPRKDIQNTESTLAKELRAFAEKGYVGDRYGVDGGFVLRQV
                     EWKGQNRVFMFGAMGFGGRGAYALDLSKIDSNNPTAVSLFDVKHDSNNGNNRVELGYT
                     VGTPQIGKTHDGKYAAFLASGYATKEITSNDNKTALYVYDLESNGTLIKKIEVPGGKG
                     GLSSPTLVDKDLDGTVDIAYAGDRGGKMYRFDLSGQSPDQWTVRPIFEGTKPITSAPA
                     ISQLKDKRVVIFGTGSDLSEDDVDSKEIQHVYGIFDNDTDTGTAQDGQGKGLLEQHLT
                     QEDKTLFLTDYKRSDGSGSKGWVVKLNGGQRVTVKPTVVLRTAFVTIRKYNDGG"
BASE COUNT          830 a          708 c          738 g          590 t
ORIGIN      
        1 gttgggcatc tgcagcggtt tgctaaaaaa cgctttaccg tgatcagtgt gcaaagttaa
       61 aatggggaag taagcttttc aatcagcaat tcggcgggcg cggaatcggg cggtttaccg
      121 aaccccggcg ttcgcggcgc gccgccccgt cccgtcccgt gaaggcaaac tcaaggaata
      181 aaagatgaat aaaacttgga aacggcaggt tttccgccat accgcgcttt ataccgccat
      241 attgatgttt tcccataccg gcgggggggg gggcgcaggc gcaaacgcaa acgcataaat
      301 acgctattgt aatgaacgga caaaagctgc ctgaggtaaa gtgggggaat gactataaca
      361 aattggcgca aaaaagcaac ccccgccaag ttaactttac gacatatttt agtggataca
      421 aaaaaaacac tactttctca ttcaataata ccgatgaagt tgttgctcaa aaaaatggtg
      481 ttaccgtttt cggcgcggcg acctacctgc cgccctacgg caaggtctcc ggttttgatg
      541 aaaagaggct gcaagagcgc ggcgatgtcc ttggttggat tggtacgacc cacccggggt
      601 tggtaggcta cagctacgaa ggtaacacat gctccagcgg agactgtcct gatgttagct
      661 ataaaaccca atttaccttc ggtaatcaag ggttgaaaag caaggtaaac ggcaagctgg
      721 atatatacga agacaaaagc cgcgacaatt cgcccattta taaattgccg gatcagcctt
      781 ggttgggcgt gtctttcaat ttaagcagcg agagcgtcgt cgaatcaaag aaactcaaga
      841 aagtggaatc ttcttttaac gaggatgtga cgcagaacaa tggtgcgcaa agcccataca
      901 aagacacaaa cctcgtttat acgacaggcg atggtcgtaa taagggtaat caagtccatc
      961 aggacaaaca ccacgccgtc gtcttttatc tgaacgccaa actgcacctg ctggataaaa
     1021 aacaaatcaa aaatatcacg caagtcaggg aacttaattt gggtgagttg aaaacgcgca
     1081 tcgagccgac gaacgcgtgg aagaataaga ggcgtctcac ttccaatgtt ggtaattggg
     1141 agttcaaaga taccggatta gtcagcgtca agctcaaatt gccgcaagtc aaagcagacc
     1201 gctgcatcaa taaatcgaac cccaataaaa acagcaaagc cccttccccc gcactgactg
     1261 cccccgcgct gtggttcgga cctgtgcaaa atggtaaggc ggagatgtat tccgcttcgg
     1321 tttctaccta ccccgacagt tcgagcagcc gcatcttcct tcaaaatctg aaaagaaaaa
     1381 ccgaccacag caaacccggt cgccattccc tcgcaacctt gaataagtcg gatattgaaa
     1441 gtaaagagcc gagtttcaca gggcggcaaa ccgtcatccg attggatggc ggcgtacagc
     1501 agatcaaact gggtaaaaac aataatgagg tcaccggttt taatggaaac agcaacaacg
     1561 caactttcgg cattgttagt gaatatggcg tcacacctga ggccgacgag tggaaaaaag
     1621 tgctgctgcc ttggacggtt cggggttctg ctgatgacaa tcaatttaga acagttaacc
     1681 aaaaatcaga caaatacagc caaagatacc gcatccgcga caacggcaag cacgagcgca
     1741 atttgggcga catcgtcaac agccccatcg tggcggtcgg cgggtatttg gctacttccg
     1801 ccaacgacgg gatggtgcat atcttcaaac aaagcggcgg ggacaagcgc agctacaatc
     1861 tgaagctcag ctacatcccc ggaacgatgc cgcgcaagga tattcaaaac accgaatcca
     1921 cccttgccaa agagctgcgc gcctttgccg aaaaaggcta tgtgggcgac cgctacggcg
     1981 tggacggcgg ctttgtcttg cgccaagtcg aatggaaagg gcaaaaccgc gtgtttatgt
     2041 tcggcgcgat gggctttggc ggcagaggcg catacgcctt ggatttaagc aaaatcgaca
     2101 gcaataaccc gaccgccgtt tccctgtttg atgtcaaaca tgacagtaat aacggcaata
     2161 atcgcgtgga attaggctac accgtcggca cgccgcaaat cggcaaaacc cacgacggca
     2221 aatacgccgc cttcctcgcc tccggttatg cgactaaaga gattaccagc aacgataata
     2281 aaaccgcgct gtatgtgtat gatttggaaa gcaacggtac gctgattaaa aaaatcgaag
     2341 tacccggcgg caagggcggg ctttcgtccc ccacgctggt ggataaagat ttggacggca
     2401 cggtcgatat cgcctatgcc ggcgatcgcg gcgggaaaat gtaccgcttt gatttgagcg
     2461 gtcaaagtcc tgatcaatgg actgtacgcc ctatttttga aggcacgaag ccgattactt
     2521 ccgcgcccgc tatttcccaa ctgaaagaca aacgcgtggt tatcttcggc acgggcagcg
     2581 atttgagtga agatgatgtg gacagcaaag aaatccaaca cgtttacggt atttttgaca
     2641 atgacacaga cacgggtacg gcgcaagacg ggcagggcaa agggctgctc gagcaacacc
     2701 ttactcagga agataaaacc ttattcctga ccgattataa gcgatccgac ggatcgggca
     2761 gtaagggctg ggtagtgaaa ttgaatggcg gacagcgcgt taccgtcaaa ccgaccgtgg
     2821 tattgcgtac cgcctttgta accatccgca aatataacga cggcgg
//
LOCUS       DAWGNT010000198         2830 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.198, whole genome shotgun sequence.
ACCESSION   DAWGNT010000198 DAWGNT010000000
VERSION     DAWGNT010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.198"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..143)
                     /locus_tag="WHR98_001863"
     CDS             complement(<1..143)
                     /locus_tag="WHR98_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308494.1"
                     /translation="MPSERLSDGIFPCVLNRIHETPDAFGGNVGCRAMFGGDQRTKYA
                     GKGL"
     gene            complement(161..718)
                     /locus_tag="WHR98_001864"
     CDS             complement(161..718)
                     /locus_tag="WHR98_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEZ2308495.1"
                     /translation="MDALKLLTNRRSSKKLKPPAPDAAELEQIFQAATQVPDHGNMRP
                     FRFTVIQGEVGLQRFRDVLKQTVAELNFGDDAMKKAEKVGNMAPMVIGVTFAPNRDVP
                     KPKPEWEQMLTAGCAAYALQLAATAQGFDNVWITGMWVNSPLLREAFGCADKDKIIGL
                     MMVGTPTEEVHKPKNTDLEAFVSHW"
     gene            complement(794..2428)
                     /locus_tag="WHR98_001865"
     CDS             complement(794..2428)
                     /locus_tag="WHR98_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipooligosaccharide phosphoethanolamine
                     transferase LptA"
                     /protein_id="HEZ2308496.1"
                     /translation="MIKPNLRPKLGSSALIAFLSLYSSLVLNYAFFAKVVELHPFNGT
                     GADIFLYTMPVVLFFLSNFVFHVIALPFVHKVLIPLILVISAAVSYQEIFFNIYFNKS
                     MLNNVLQTTAAESARLITPGYVLWIVCLGVLPALAYIAVKVKYRVWYKELLTRLVLAA
                     VSFLCALGIAMLQYQDYASFFRNNKSVTHLIVPSNFIGAGVSKYKDWKRSNIPYTQLD
                     MAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSC
                     GTSTAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKV
                     PNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYT
                     EAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYV
                     SDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENE
                     YSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRPR"
BASE COUNT          695 a          759 c          738 g          638 t
ORIGIN      
        1 agacctttgc ctgcgtactt ggtacgctgg tcgcctccga acatggcgcg acacccgaca
       61 tttccgccga acgcatcggg cgtttcatga atccggttta aaacgcatgg aaaaatgccg
      121 tctgaaagcc tttcagacgg cattgtgctt gagattccgt ttaccaatgg ctgacaaacg
      181 cttccaaatc ggtattcttg ggcttatgca cttcctctgt cggcgtgccg accatcatca
      241 gcccgatgat tttatcctta tccgcacaac cgaaagcctc ccgcaacaag gggctgttga
      301 cccacatccc cgtaatccag acattgtcga atccctgagc cgttgccgcc agttgcagcg
      361 catacgccgc acaacccgcc gtcagcatct gctcccattc cggtttcggc ttaggcacat
      421 cacgattcgg cgcaaacgtt accccgatga ccatcggcgc catattgccc actttttccg
      481 cctttttcat cgcatcgtcg ccgaaattca attcggcaac cgtttgcttt aacacatcgc
      541 gaaaacgttg caatcctacc tcgccttgaa tcacggtaaa acggaagggg cgcatattgc
      601 cgtgatcggg aacttgggtt gccgcctgaa atatttgttc caactccgcc gcatcggggg
      661 cggggggctt cagctttttg gaagatcggc ggttcgtcaa taattttaaa gcatccatat
      721 cgttatactc cggtcatcgg tcgggtgttc ggacacatat gccgtccgaa ggcttcagac
      781 ggcatatccg gcatcagcgc ggacggcggc aggctgccaa tatatccatt tccttccgat
      841 aggtttggct attggaaatg tccatcagcc ccaataccgt gctgaaatag tggtcgtgcg
      901 aatattcgtt ttccgccgct ttttgtttga ggcattggaa atctatgccc ccgtgttggc
      961 ggaaggcttt ggaaaaccac ataaccatcg ggatatgcgt ctgcccggaa ggcgcgatgg
     1021 cgtaaggcgc ggcgtgcagg tacatcccgt tttcgcccaa actttcgccg tggtcggaaa
     1081 cataatgcac cacgctttcc aaatcgtcgc ggttttcaag tttgcggata accttgtcga
     1141 taaactggtc cacatacaaa accgtattgt cgtaagtgtt gaccagcgtg gcgcgggtgc
     1201 atttgttgat ttcgttggtg tcgcaggtcg gcgtgaattt gcgttcggct tcggtatagc
     1261 gttcgtaata cgtcggcccg tggctgccga tggtatgcag gattaaaacc gcgtctttat
     1321 cgtttttgtt gaggacttcg tcgaacttag tcagcaggat attgtcgaga cactcgccgt
     1381 tgcggcagta ttcgggcagg ttgagcgagg taacgtcggt attcggcact ttgccgcaca
     1441 cgcccttgca gccggaatcg ttttccaacc aggtaacttc cacgccggcg cgctgcacga
     1501 tgtccagcag gttgtcttgg tgttcggctt tgatttcgtc ataatccgtg cggtcgaagg
     1561 ttgagaacat acacggcagg gagtgcgcgg tcgatgtgcc gcagcttctg acctgcggga
     1621 aattgacaat ttcatcgccg cgcgcggcaa gcagcggcgt agtttggcgg ctgtaaccgt
     1681 tcaaacccca gttggcggca cgcgtggtct cgcccacgac cagcaccacg aaacggcgca
     1741 ggctgccggc cggccggttt tgcacgaccg ccatatccaa ttgcgtataa ggaatattgg
     1801 aacgcttcca atctttgtat ttcgacacgc ccgcgccgat gaaattagat ggcacaatca
     1861 gatgggttac tgatttattg ttgcggaaaa acgaggcgta atcctgatat tgcaacattg
     1921 cgatgcccaa cgcgcacaaa aaggaaacgg cggcaagcac aaggcgcgtc aaaagctcct
     1981 tataccaaac gcggtattta accttgacgg cgatatacgc cagcgcgggc aatacgccca
     2041 aacatacaat ccacagcaca tagcccggcg taatcaggcg cgcgctttcg gcagccgtag
     2101 tttgcaagac attattcaac atcgacttgt tgaaatagat attgaaaaat atttcttggt
     2161 aagacaccgc cgcactgata accaatatca acggaatcaa taccttatgc acgaaaggca
     2221 gggcaatgac gtgaaaaacg aaattactta aaaaaaacag caccaccggc atcgtataga
     2281 ggaagatatc cgccccggtg ccgttaaaag gatgaagctc gacaactttg gcaaaaaagg
     2341 cgtaattcaa taccagcgag gaatacaggg aaaggaaggc aatcagcgcg gaagagccga
     2401 gcttcggcct caggttcggt tttatcattt ggaatgtgtc ggataagggt tggaaaaggc
     2461 atccggcatt tggaatccgg attattgaaa aagattctta attataaggc aacggagcaa
     2521 agcagggcaa gaaaacggcg gctgtgcggg gggttccgcc cgccattcaa acgtccggca
     2581 gacataaaaa catcgtaagc aagattcgaa ccggtctgca accgcccctg ccagaaaaac
     2641 gggcaaagca tttcatattg gaaaaacccg gccgcgccgc cgacgggaca gtccggcaca
     2701 aacagcatca cgcccggatt gaaaaggacg gatagccgcc ggcagcacag ttttaccccg
     2761 catcccaaaa cgccgccgga gaacgccgaa acagccgatg ccgtctgaaa cgcattcagg
     2821 cggccttgga
//
LOCUS       DAWGNT010000199         2830 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.199, whole genome shotgun sequence.
ACCESSION   DAWGNT010000199 DAWGNT010000000
VERSION     DAWGNT010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.199"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            31..1248
                     /locus_tag="WHR98_001866"
     CDS             31..1248
                     /locus_tag="WHR98_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002259190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEZ2308497.1"
                     /translation="MTHTASKTPKFWLTITAAAFILLITIGMRMTLGLFVQPVVNTTE
                     LSIAQFSLIIAVFQLMWGISQPLSGALADRFGAFRVLSGGAVLLVCACLIAPNIPTYW
                     GLMIAVGLLLAFGTGSGGFSIIMGQVAAQVPAHKRGLASGLVNAGGSAGQFLFAPLVQ
                     GLVVLPEVGWTGTFYVWGAIALLILPVSWWLAGGNNAAHTQHAQATHGQSLGEAVKTA
                     FKTPSYILLHLSFFACGFHIAFLVTHLPTEVALCGLPATVASTAIAIIGLANIAGCVF
                     SGWCTSRVRGKYVLFGLYASRAAMILIYIFSPKTDLNFYIFAAALGFTWLATVTPTAS
                     ITGKLFGTRYLATLFGLKMLSHQIGGFLGSYIGGIVITQFGDYGWMWYADALLAGTAA
                     LLNLPIREPRTAA"
     gene            complement(1451..1591)
                     /locus_tag="WHR98_001867"
     CDS             complement(1451..1591)
                     /locus_tag="WHR98_001867"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308498.1"
                     /translation="MNYRIGNAVCIDEMPDTGRGGQTFAKRTASDASPARAGAVSDGI
                     LS"
     gene            1604..2730
                     /locus_tag="WHR98_001868"
                     /pseudo
     CDS             1604..2730
                     /locus_tag="WHR98_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250655.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
BASE COUNT          669 a          844 c          670 g          647 t
ORIGIN      
        1 cgcaaactta accgactcaa aatacacatt atgacgcaca ccgcatcgaa aacacccaaa
       61 ttttggctga ccatcaccgc cgccgcattc atcctgctga ttaccatcgg catgaggatg
      121 acgctcggac tgttcgtcca acccgtcgtc aacaccaccg aattgagcat tgcccaattc
      181 agcctcatca tcgccgtttt ccaactgatg tggggcatat cgcaaccatt gtccggcgcg
      241 cttgccgacc gtttcggcgc gttcagggta ttaagcggcg gcgccgtcct gctcgtctgc
      301 gcctgcctga ttgcccccaa catcccgact tattgggggc tgatgattgc cgtcgggctg
      361 ctgctcgcat tcggcaccgg ttccggcggt ttctccatca ttatggggca ggtcgccgcc
      421 caagtccccg cacacaaacg cggcttggca tccggactgg tcaacgccgg cggttcggca
      481 ggacaattcc tgttcgcacc gctggttcaa ggactcgtcg tcctgcccga agtcggctgg
      541 acgggcacat tttacgtttg gggcgcaatc gccctgctga ttctgcctgt ctcatggtgg
      601 cttgccggcg gcaacaacgc cgcccacacc caacacgccc aagccacaca cggacaaagc
      661 ctcggagaag cagtcaaaac cgccttcaaa accccaagct acatcctgct gcacctaagc
      721 ttttttgcct gcggcttcca catcgccttt ctcgtaaccc acctacccac ggaagtcgcc
      781 ctgtgcggac tgcccgccac cgtcgcatcc acagccatcg ccatcatcgg actggcaaac
      841 atcgccggtt gtgtgttctc aggctggtgc acaagccgcg ttcggggcaa atacgtcctg
      901 ttcggactgt acgcctcgcg cgccgcgatg atactcatct acattttttc gcccaagacc
      961 gacctcaact tctacatttt cgccgccgca ctcggattta cctggctcgc caccgtcacg
     1021 ccgaccgcct ccattaccgg caaactcttc ggcacacgct acctcgccac cctgttcgga
     1081 ctgaagatgc tcagccacca aatcggcgga ttcctcggct cgtacatcgg cggcatcgtg
     1141 attacacaat tcggcgacta cggctggatg tggtacgccg acgcactgct ggcgggaacc
     1201 gccgccctcc tcaacctccc catccgcgaa ccccgaaccg ccgcatgaaa gaatgccgtc
     1261 tgaaaaccct cagacggcat tttccaaaca ccccgcccgt ttccggactg cacgacacgc
     1321 aaatcagcct tatcaaaccg caaacaaccg ccgcgattaa accgccattc aaataagtcc
     1381 gttttccctt cgggtgtaaa atcatcacaa aacgcgatac tgtatatcgc cgggcgttat
     1441 gcagcggatt tcaggataaa atgccgtctg aaaccgcccc tgcccgggcg ggcgaagcgt
     1501 cggatgcggt gcgcttggca aaggtttgcc cgccgcgccc cgtatccggc atttcatcaa
     1561 tgcagaccgc atttccaatc ctataattca aggtgtccgc cttatgaaaa tcgtttttat
     1621 cacaacagtc gcatccagca tttacggttt ccgcgccccc gtcattaaaa aattaatcgg
     1681 caaaaaccat caggtgtatg cctttgtatc ggagttttcc gacaatgaat tggatattat
     1741 cagggaaatg ggggttacac ccgttaccta ccgttcaaac cgcagcgggc tgaacccgtt
     1801 ttccgatata aaatccacct tcctcatctt taaagaactc aaaaaaatat cgccggattt
     1861 ggttttccct tatttcgcaa aacccgtgat tttcggcact tttgccgcaa aactggcagg
     1921 cgtgcccaga atcgtcggga tgctggaagg tttgggattc gcatttaccc cgcagccgga
     1981 aggcataccg ttaaaaacaa aaatcataaa ggggattttg attgccttgt accacattgc
     2041 cctgccgatg ttggaaagcc tgattgtatt aaaccccgac gacaaagacg aactgacgga
     2101 caaatacggc atcaaaataa aaaacatcca tattttgggc ggaatcggtc tggatttgcg
     2161 gcaatatcct tattccgagg cggatattcc cgatgaaaaa gaacccgtaa aatttctctt
     2221 tatcggcaga ttgttgaaag aaaaagggat tgatgagttt attcgggcgg cggaacaggt
     2281 taaggacaaa taccccgata cggtttttac cgctttgggc gcaatcgaca aatcacgcgg
     2341 ggggggggcg atttggaacg ccttatcgcc cgcgatatta tccgtttccc cggttttgtg
     2401 aacaatgttt ccgaagtgat aaaggcgcat catatattcg tattgccgtc ttatagggaa
     2461 ggcgttcccc gaagcactca ggaggcaatg gccgtcggca gggcggtgat tacgacggat
     2521 gtccccggat gcagggaaac ggtcgccgac aaggtcaacg gcttcctgat cgaaccttgg
     2581 aatccccgca tcttggccga aaaaatgatt tattttatcg aaaacaggga agccgttcgc
     2641 ctgatgggga atgcaagtta tgcgattgcc aaagataaat tcgatgccga aaaagtcgat
     2701 ttaaaattac tcgatatttt gaaggcgtaa acaaggctgc ccgcttttga gtttcggtca
     2761 tttctgataa acctccgtca ttcccgccac acccccgtca ttccctcgaa agcgggaatt
     2821 caggttcgtt
//
LOCUS       DAWGNT010000200         2583 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.200, whole genome shotgun sequence.
ACCESSION   DAWGNT010000200 DAWGNT010000000
VERSION     DAWGNT010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.200"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(42..320)
                     /locus_tag="WHR98_001869"
     CDS             complement(42..320)
                     /locus_tag="WHR98_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308499.1"
                     /translation="MYYQVGNKCLEKHQAENLYFSLVVPRIKENGQIVRPEYNGSLWK
                     MSDGQPLRLLLAECSPKDNLQSGLETGWIVFGILASVYFVSLLKKVLK"
     gene            complement(327..611)
                     /locus_tag="WHR98_001870"
     CDS             complement(327..611)
                     /locus_tag="WHR98_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308500.1"
                     /translation="MFGGRLKNAPSITAKHFLKENIMKFINTCRKYGAKLAVVTAAPL
                     ALAAHANATLPDTAKNALEAAKADGMEVGWIVVGVFAALFVFSIVKRVMK"
     gene            complement(619..816)
                     /locus_tag="WHR98_001871"
     CDS             complement(619..816)
                     /locus_tag="WHR98_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308501.1"
                     /translation="MQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEEAI
                     NAGLEEIGNQYEFVVFGFLKD"
     gene            complement(821..1111)
                     /locus_tag="WHR98_001872"
     CDS             complement(821..1111)
                     /locus_tag="WHR98_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308502.1"
                     /translation="MNIQLQGHIVGVKKFNGQIEGKSFDYCRLIVATPLDSSQGNALG
                     SSTTEYDFGGSANFEQFRNAQFPIEANLNVEIVTTGKTQKLKVIGFQLVKKG"
     gene            complement(1156..2499)
                     /locus_tag="WHR98_001873"
     CDS             complement(1156..2499)
                     /locus_tag="WHR98_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002215773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HEZ2308503.1"
                     /translation="MEDKQGMTKAVAGVMTDAPADGRKPTTASNLPPLSNRGGTETET
                     AGRVQEVFECYETYITDGKGNLLGVPLRRGVSDSAFIDQISFSFHEKTFFDKYGVRVS
                     LLEDEDFIRAASMLAEEVFGFGIYKESKGSGGRFYERCWLMGSEDVLYGRVHFGGQNN
                     TILFELTGTGCGVAKEGWESRLFAFLTNAIRPKITRVDIAKDFFNGEYSPNQAREDRN
                     KGMFTCHHVKPKGECLGSDWEEDDEAKMTKGKTYGIGSRESSKYVRVYEKGKQLGDKT
                     STWTRFEIEFKAKDIVIPFEVLQNPGEYFGGAYPICERFAQKATRIHAVKEDKVISAD
                     RYLEWVKKQFGRAANGLKFIFPELDKAKLFELIEPSHHKLPKSLAPEAYDCAFLKAQA
                     IHEQPAFKPYKDPYYMYEYYENLEKQLEQQKHVNNEESYNNFIYDKFARLPISWA"
BASE COUNT          622 a          603 c          594 g          764 t
ORIGIN      
        1 taatacgggt acggaaacgc cgagataaaa ataaaaatcc atcatttcaa aacctttttc
       61 agcagggaaa caaagtaaac ggacgcgagg atgccgaata ctatccagcc tgtttcaaga
      121 ccgctttgca ggttgtcttt cggactgcat tccgccaata aaagccttag cggctgaccg
      181 tccgacatct tccacaggct gccgttatat tccggcctga caatctgtcc gttttctttg
      241 attcttggta ctaccaagct gaaataaagg ttttcagcct ggtgcttctc aagacattta
      301 tttccgactt ggtagtacat gccgtcttac ttcatcactc tcttaacgat ggaaaacaca
      361 aaaagcgcgg cgaaaacgcc cactacaatc caaccgactt ccataccgtc ggcttttgcg
      421 gcttccaaag cgttttttgc cgtatcgggc aacgttgcat ttgcatgtgc ggccaaagcc
      481 aggggagcag ctgttacaac agccagtttt gcgccgtatt tacggcaggt gttaataaat
      541 ttcatgatat tttccttcaa aaagtgtttg gcggtaatgg atggagcgtt tttcaaacga
      601 ccgccgaaca tccgaaaatc agtctttcaa aaatccgaat acgacaaatt cgtattggtt
      661 gccgatttct tccaaacctg cgttaatcgc ttcttcgaag tcgtagaaat aatcggcatt
      721 ggtgattaat ttggtatgtc cgatgtcgcc cgtttcagga gagagataca gaaagtcccc
      781 tgttgatacg gactggacaa catagacttt ctgcattcaa tcagcctttc ttcacgagtt
      841 gaaaaccgat gactttcagt ttttgggttt tgcccgtagt aacgatttcc acgttcaggt
      901 ttgcttcgat gggaaattgg gcgtttcgga actgctcgaa attggcagag ccgccgaaat
      961 cgtattcagt agtagagctg cccaatgcgt tgccttggga gctgtctaag ggtgtggcga
     1021 caatcaggcg gcaatagtcg aagctcttgc cttcgatttg tccgttgaat tttttaacgc
     1081 cgacgatgtg gccttgaagt tggatgttca ttttttggtt tccttgtgtg attaaacgtc
     1141 tttcgggcag acactttaag cccatgaaat cggtagtctt gcgaatttgt cgtaaatgaa
     1201 gttgttatag ctttcttcat tgttgacgtg tttttgctgt tcaagctgtt tttcaagatt
     1261 ctcgtaatat tcgtacatat agtaagggtc tttgtacggt ttgaatgcgg gctgttcatg
     1321 aatggcttga gctttcaaaa aggcgcagtc gtaggcttcg ggagccaaag acttgggcag
     1381 cttgtgatga ctcggctcaa tcagttcaaa cagtttggct ttgtctaatt cgggaaaaat
     1441 gaatttcaga ccgtttgccg cacgtccgaa ctgttttttt acccattcaa ggtagcggtc
     1501 ggctgaaatg accttatctt ccttaaccgc gtgtatgcgc gttgcctttt gggcgaatcg
     1561 ttcgcaaatc ggatatgcgc cgccgaaata ttcgcccgga ttctgcaaaa cttcgaaagg
     1621 gataacgatg tcttttgctt tgaattcaat ttcaaagcgc gtccatgtgc ttgttttatc
     1681 gcccaactgc ttgccttttt catagacgcg gacatatttg gacgattcac gggagccgat
     1741 accataggtc ttgcctttgg tcattttggc ttcatcgtct tcttcccaat ctgaccccaa
     1801 acattcgcct tttggtttga cgtgatgaca ggtaaacata cctttatttc ggtcttcacg
     1861 ggcttggttc gggctgtatt cgccgttgaa aaagtctttt gcgatgtcaa cgcgtgtgat
     1921 ttttgggcgg attgcattag tcaggaatgc gaaaagtcgt gattcccagc cttcttttgc
     1981 gacgccgcaa ccggtgccgg tcagttcgaa aagaatggta ttgttttgtc cgccaaaatg
     2041 gacgcgaccg tataggacgt cttccgaacc catcaaccaa cagcgctcat aaaaacgacc
     2101 gcccgagcct ttggactctt tgtagatacc gaaaccgaaa acttcttcgg cgagcatgga
     2161 cgcggcgcga atgaaatctt cgtcttccaa aagacttaca cgaacgccgt atttatcgaa
     2221 aaaggttttt tcatgaaatg aaaagctaat ttgatcaatg aaagccgaat ctgatacacc
     2281 gcgcctcaga ggaacgccta acaggtttcc tttaccgtcc gttatgtacg tttcgtaaca
     2341 ttcgaagact tcctgaaccc tgcctgccgt ttcggtttct gtcccccccc tgttagataa
     2401 ggggggaaga tttgaagcgg ttgtcggctt cctgccgtcc gctggcgcgt ccgtcatcac
     2461 gccggcaacc gcctttgtca tcccttgctt atcttccatg gtgcgaatcc tcaaaaacgg
     2521 gcaaaaaaaa gccctgttac ttgtagaaag taaaggacgt taatttttgt taatcgtccc
     2581 ttc
//
LOCUS       DAWGNT010000201         2578 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.201, whole genome shotgun sequence.
ACCESSION   DAWGNT010000201 DAWGNT010000000
VERSION     DAWGNT010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.201"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            74..703
                     /locus_tag="WHR98_001874"
     CDS             74..703
                     /locus_tag="WHR98_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CadD family cadmium resistance transporter"
                     /protein_id="HEZ2308504.1"
                     /translation="MIQNVVTSIILYSGTAVDLLIILMLFFAKRKSRKDIINIYLGQF
                     LGSVSLILLSLLFAFVLDYIPSKEILGLLGLIPIFLGIKVLLLGDSDGEAIAKEGLRK
                     DNKNLIFLVAMITFASCGADNIGVFVPYFTTLNLANLIVALLTFLVMIYLLVFSAQKL
                     AQVPSVGETLEKYSRWFVAVVYLGLGVYILIENNSFDMLWTVSGQEKIL"
     gene            849..2510
                     /locus_tag="WHR98_001875"
     CDS             849..2510
                     /locus_tag="WHR98_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002218068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEZ2308505.1"
                     /translation="MLTYTPPDARPPAKTHEKPWLLLLMAFAWLWPGVFSHDLWNPAE
                     PAVYTAVEALAGSPTPLVAHLFGQTDFGIPPVYLWVAAAFKHLLSPWAADPYDAARFA
                     GVFFAVIGLTSCGFAGFNFLGRHHGRSVVLILIGCIGLIPVAHFLNPAAAAFAAAGLV
                     LHGYSLARRRVIAASFLLGTGWTLMSLAAAYPAAFALMLPLPVLMFFRPWQSRRLMLT
                     AVASLAFALPLMTVYPLLLAKTQPTLFVQWSDYHMFGAFGGVRHVQTAFSLFYYLKNL
                     LWFALPALPLAVWTVCRTRLFSTDWGILGVVWMLAVLVLLAVNPQRFQDNLVWLLPPL
                     ALFGAAQLDSLRRGAAAFVNWFGIMAFGLFAVFMWTGFFAMNYGWPAKLAERAAYFSP
                     YYVPDIDPIPMAVAVLFTPLWLWAITRKNIRGRQAVTNWAAGVTLTWALLMTLFLPWL
                     DAAKSHAPVVRSMEASLSPELKRELSDGIECIDIGGGDLHTRIVWTQYGTLPHRVGDV
                     QCRYRIVRLPQNADASQGWQTVWQGARPRNKDSKFALIRKIGENI"
BASE COUNT          513 a          645 c          667 g          753 t
ORIGIN      
        1 cggggttgaa gttgacatct acaaagttta atgtttgaat acattaaaaa aatatatttg
       61 aatgagatgt tttatgattc aaaatgttgt tacttcaata atcctgtatt ctgggacagc
      121 cgtagactta cttattatcc taatgttatt ttttgccaaa agaaaaagca gaaaagacat
      181 cattaacatc tatttaggac aatttctagg ctctgttagc ctgatattgc taagtttgct
      241 ttttgcattt gtcttagatt atattcctag taaagagatt ttaggtttgc tcggcttgat
      301 tccaattttc ctaggcatca aagttttgct gttaggagat tctgatggag aggctattgc
      361 caaagagggt ttgcgcaaag ataataaaaa cctgattttt ctagtcgcta tgattacttt
      421 tgcaagttgt ggtgctgaca atattggtgt ctttgtccca tattttacta ccttaaattt
      481 agcgaatttg atagtggctt tacttacctt tctagtcatg atttatctct tggttttttc
      541 tgcccaaaaa ttagcacaag tcccttctgt tggagaaact ttggaaaaat atagcagatg
      601 gtttgttgct gttgtttatt tgggattggg ggtatatatc ctgattgaaa acaacagttt
      661 tgatatgcta tggactgtgt cgggccagga aaaaatatta tgaaaaagat agtatctgca
      721 aagactgcca tgtgcagtct tttttgttgc cggtcttttt gtgtctgatg ccgtctgaag
      781 cagtctctgc acgacctttg tgcgaatatt tgctacactt ggcaatccgt ccatttcttc
      841 tcacgcttat gctgacctac actccgcccg atgcccgccc gcccgccaaa acccacgaaa
      901 agccgtggct gctgctgttg atggcgtttg cctggttgtg gcccggcgtg ttttcccacg
      961 atttgtggaa tcctgccgaa cctgccgtct ataccgccgt cgaagcactg gcaggcagcc
     1021 ccaccccttt ggttgcccat ctgttcggtc aaaccgattt cggcataccg cccgtgtatc
     1081 tttgggttgc cgccgcattc aaacatttgc tgtcgccgtg ggcagccgac ccgtatgatg
     1141 ccgcacgctt tgcaggcgta ttttttgccg ttatcggact gacttcctgc ggctttgccg
     1201 gtttcaactt tttgggcaga caccacgggc gcagcgttgt tttaatcctt atcggctgta
     1261 tcgggctgat tccggttgcc catttcctca atcccgccgc cgccgccttt gccgccgccg
     1321 gcctggtgct gcacggctac tcgctggcac gccggcgcgt gattgccgcc tctttcctgc
     1381 ttggtacggg ttggacgcta atgtcgttgg cagcagctta tccggcggca tttgccctga
     1441 tgctgccctt gcccgtactg atgtttttcc gtccgtggca aagcaggcgt ttgatgttga
     1501 cggcagtcgc ctcacttgcc tttgccctgc cgcttatgac cgtttacccg ctgctcttgg
     1561 caaaaacgca gcccacacta tttgtacaat ggtcggatta tcatatgttc ggcgcctttg
     1621 gcggcgtgcg gcacgttcag acggcattca gtttgtttta ctatctgaaa aatctgcttt
     1681 ggtttgcatt gcccgcgctg ccgctggcgg tttggacggt ttgccgcacg cgcctgtttt
     1741 cgaccgactg ggggattttg ggcgtcgtct ggatgcttgc cgttttggtg ctgcttgccg
     1801 tcaatccgca gcgttttcag gataacctcg tctggctgct tccgccgctt gccctgttcg
     1861 gcgcggcgca actggacagc ctgaggcgcg gcgcggcggc gtttgtcaac tggttcggca
     1921 ttatggcgtt cggactgttt gccgtgttca tgtggacggg ctttttcgcc atgaattacg
     1981 gctggcccgc caagcttgcc gaacgcgccg cctatttcag cccgtattat gttcctgata
     2041 tcgatcccat tccgatggcg gttgccgtac tgttcacacc cttgtggctg tgggcgatta
     2101 cccggaaaaa catacgcggc aggcaggcgg ttaccaactg ggcggcaggc gttaccctga
     2161 cctgggcttt gctgatgacg ctgttcctgc cgtggctgga cgcggcgaaa agccacgcgc
     2221 cggtcgtccg gagtatggag gcatcgcttt ccccggaatt aaaacgggag ctttcagacg
     2281 gcatcgagtg tatcgacata ggcggcggcg acctgcacac gcggattgtt tggacgcagt
     2341 acggcacatt gccgcaccgc gtcggcgatg tacaatgccg ctaccgtatc gtccgcttgc
     2401 cccaaaatgc ggatgcgtcg caaggctggc agacggtttg gcagggtgcg cgcccgcgca
     2461 acaaagacag taagttcgca ctgatacgga aaatcgggga aaatatataa aaaacaacag
     2521 attgagccga atttctggat taagtgccgg aaatcgcgta taattgcgcg attaaacc
//
LOCUS       DAWGNT010000202         2578 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.202, whole genome shotgun sequence.
ACCESSION   DAWGNT010000202 DAWGNT010000000
VERSION     DAWGNT010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.202"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(194..265)
                     /locus_tag="WHR98_001876"
     tRNA            complement(194..265)
                     /locus_tag="WHR98_001876"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(230..232),aa:Arg,seq:cct)
     gene            complement(285..731)
                     /locus_tag="WHR98_001877"
     CDS             complement(285..731)
                     /locus_tag="WHR98_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002221966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HEZ2308506.1"
                     /translation="MNFSFVPLFLVTLILLGVVSNNNSITISATILLLMQQTALVQFV
                     PLVEKHGLNLGIILLTIGVLSPLVSGKAQVPPVAEFLNFKMISAVFIGIFVAWLAGRG
                     VPLMGQQPVLITGLLIGTVIGVAFMGGIPVGPLIAAGILSFVVGKG"
     gene            complement(736..1710)
                     /gene="ispB"
                     /locus_tag="WHR98_001878"
     CDS             complement(736..1710)
                     /gene="ispB"
                     /locus_tag="WHR98_001878"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HEZ2308507.1"
                     /translation="MLENLPYFQRHLPEDLAKVNEVINRAVQSDVALISQIGTYIISA
                     GGKRLRPIMTILAGKAVGYDDEKLYSLAAMVEFIHTSTLLHDDVVDESDLRRGRATAN
                     NLFGNAAAVLVGDFLYTRAFQLMVASGSMRVLEVMADATNIIAEGEVMQLMNIGNTDI
                     TEEQYIQVIQYKTAKLFEAAAQVGAILGKASPEHERALKDYGMYVGTAFQIIDDVLDY
                     SGETEETGKNVGDDLAEGKPTLPLIYLMRQGSEQVANDVRTALENADRSYFEKIHDYV
                     VRSDALAYSIGEARKAVDCAVAALDALPDSEVKDAMIQLAKESLVRVS"
     gene            complement(1726..1914)
                     /locus_tag="WHR98_001879"
     CDS             complement(1726..1914)
                     /locus_tag="WHR98_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003750328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308508.1"
                     /translation="MVNIRTPLCGTRHCIVICLFCQSLRGSDNHMPSEKMYPDGFADI
                     IARYLNQLSSGICRLTET"
     gene            1934..2242
                     /gene="rplU"
                     /locus_tag="WHR98_001880"
     CDS             1934..2242
                     /gene="rplU"
                     /locus_tag="WHR98_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEZ2308509.1"
                     /translation="MYAVVKTGGKQYKVSVGEKLKVEQIPAELDSQIELTEVLMIADG
                     ESVKVGAPFIEGAKVTAKVVAHGRGEKVRIFKMRRRKHYQKRQGHRQNFTQIEIVAIA
                     "
     gene            2267..2539
                     /gene="rpmA"
                     /locus_tag="WHR98_001881"
     CDS             2267..2539
                     /gene="rpmA"
                     /locus_tag="WHR98_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016686478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEZ2308510.1"
                     /translation="MASKKAGGSTRNGRDSEAKRLGVKAYGNELIPAGSIIVRQRGTK
                     FHAGDNVGMGKDHTLFAKVDGYVEFKTKGALNRKTVSIRPYTGSEE"
BASE COUNT          756 a          700 c          570 g          552 t
ORIGIN      
        1 taaaacaaca gatttccaag ccggaacatc ttttacggag cctgaaaatc atttcatgat
       61 tctaccgtcc taaaggtcgg tttttcaagc aggaagaaaa agttttcaga tggcaaaaaa
      121 gccctccaac actgaaaggc cttatatcgg aaacttcccg caacacggga aacagacaaa
      181 tgaaatcgtc aaacctcgcc aacaggaatc gaacctgtat tttacgctta ggaggcatac
      241 gttctatccg ttgaactatg gcgagccgaa atgaaaagga gattttaacc ctttccgacg
      301 acaaaagaca agatgccggc cgcaatcagc ggcccgacag ggataccgcc cataaatgcc
      361 accccgataa ccgtcccgat taacagccct gtaattaaaa caggctgctg tcccatcaaa
      421 ggcacgccgc gtcccgccag ccaagccacg aaaataccga taaaaacggc ggatatcatt
      481 ttaaaattca aaaattcggc aacgggagga acctgcgcct ttcctgaaac caacggactc
      541 aaaaccccta tggtcaaaag aatgataccg agattcaacc catgcttctc gaccaacggg
      601 acaaactgta ccaatgccgt ctgctgcatc agcagcaata tggttgccga gatggtaatc
      661 gaattgttgt tgctgaccac ccccaacaga atcagcgtaa ccagaaacag gggaacaaaa
      721 ctgaaattca tcgcctcaag acaccctgac caaagattcc ttcgccagct gaatcatggc
      781 atccttcact tcgctgtcgg gcagggcatc caacgcggca acggcacaat cgactgcttt
      841 gcgcgcctcg cctatcgaat atgccaaagc atccgaacgg acgacataat cgtggatttt
      901 ctcaaaatag ctgcgatctg cattttccaa agcagtacgc acatcgttcg caacctgttc
      961 ggaaccctga cgcatcagat aaatcaaagg caaagtcggt tttccttccg ccaaatcgtc
     1021 gccgacgttt ttgccggttt cttcggtttc gccagaatag tccagcacat cgtcaataat
     1081 ttggaatgcc gtaccgacat acataccgta gtctttcaac gcccgttcgt gttcggggga
     1141 agccttgccc aaaattgcgc cgacctgcgc cgccgcttca aacaattttg ccgttttata
     1201 ttggatgact tggatatatt gttcttcggt aatgtccgta ttgccgatgt tcatcagctg
     1261 catgacttcg ccctcggcaa taatgttggt tgcatccgcc atcacttcca aaacgcgcat
     1321 actgcccgag gcaaccatca gttgaaaggc gcgcgtgtat aaaaagtcgc caaccaacac
     1381 agccgccgca ttgccgaaca gattgtttgc cgttgcccgc ccacggcgca aatcgctttc
     1441 atcgacgaca tcgtcgtgca gaagcgtcga agtgtggata aactcgacca tcgccgccag
     1501 cgaatacagt ttctcgtcat cataaccgac cgccttaccc gccaaaatcg tcataatcgg
     1561 acgcaggcgt ttgccgcccg cgctgatgat atatgtaccg atttgcgaaa tcagtgcgac
     1621 atcggattgc accgcacggt tgatgacttc attgactttg gcaaggtctt caggcagatg
     1681 tcgctggaaa tagggcagat tctcgagcat ggcagactct caggtttacg tttccgtcaa
     1741 acggcagata ccgcttgaaa gctgattcaa atagcgggca attatatcag caaagccatc
     1801 agggtacatc ttttcagacg gcatatggtt atccgaaccg cgcaaacttt gacaaaacag
     1861 gcaaataaca atacaatgac gagttccgca caatggtgtg cggatattaa ccataaccct
     1921 tatggagttg agtatgtacg cggtcgtaaa aaccggcggc aaacagtata aagtttccgt
     1981 cggcgaaaaa ttgaaagtag aacagatacc agccgaactc gacagccaaa tcgaactgac
     2041 cgaagttttg atgattgctg acggcgaatc tgtaaaagtt ggcgcaccct ttatcgaagg
     2101 tgcaaaagta acggctaaag tagtggcaca cggtcgtggc gaaaaagtcc gcatcttcaa
     2161 aatgcgccgc cgcaaacact accaaaaacg ccaaggccac cgccaaaatt tcacccaaat
     2221 cgaaatcgtg gcaatcgcct aaccttaaaa cttaggagca ttacaaatgg caagtaaaaa
     2281 agcaggcggc agcacccgca acggtcgcga ttcagaagcc aaacgcttgg gcgttaaagc
     2341 ctacggcaac gagctgattc ccgcaggttc catcatcgta cgccaacgcg gtaccaaatt
     2401 ccacgcaggc gacaacgtag gtatgggcaa agaccacact ttgttcgcca aagttgacgg
     2461 ttatgtcgaa ttcaaaacca aaggcgcgct gaaccgtaaa actgtcagca tccgtcctta
     2521 caccggttct gaagaataat ccaaccgata cctgaagccg catcttttca cgatgcgg
//
LOCUS       DAWGNT010000203         2565 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.203, whole genome shotgun sequence.
ACCESSION   DAWGNT010000203 DAWGNT010000000
VERSION     DAWGNT010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.203"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(12..173)
                     /locus_tag="WHR98_001882"
     CDS             complement(12..173)
                     /locus_tag="WHR98_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308511.1"
                     /translation="MAYFGGFVRALFDLGVFERGSVKGRGKWFSRVWWRSEVLCLMCG
                     GIFSVKLIL"
     gene            242..2467
                     /locus_tag="WHR98_001883"
     CDS             242..2467
                     /locus_tag="WHR98_001883"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEZ2308512.1"
                     /translation="MTQKSTIVYTHTDEAPALATQSLLPIVQAFTRHADIDVKTADIS
                     LSGRILAAFPEYLTEAQRVPDALAELGELVKQPDANVIKLPNISASVPQLTAAIKELQ
                     SKGFAVPDYPADPQTDEEKAVRERYDRIKGSAVNPVLREGNSDRRAPKAVKNFAKKNP
                     HSMGAWTKDSKTHVATMQSGDFFHNEQSVTVPEATSVSIVFTDKQGNKKELRAPVALK
                     AGEIIDATVMSKKALLAFLAEQVKDAKAKGVLFSLHMKATMMKVSDPIIFGHAVKVFF
                     APVFEKFGDKLAAAGVNVNNGFGNLLANLDKLDADTRTAVEAEIAAVYAANPDLAMVD
                     SDKGITNLHVPSDVIVDASMPAMIRNSGRMWDKDGKAQDTKAVIPDSSYAGVYQATID
                     FCREHGAFDPTTMGTVPNVGLMAQAAEEYGSHNKTFEIEADGQVQVIDAAGKVLMQHD
                     VEAGDIWRMCQTKDAPVKDWVQLAVNRARLSNTPAVFWLDENRPHDKSLLAKVKAYLA
                     ELDTNGLDIRVLAPEEAAKFSLGRLKNGEDTISVTGNVLRDYLTDLFPILELGTSAKM
                     LSIVPLMNGGGMFETGAGGSAPKHVQQFLEENHLRWDSLGEFLALAVSFEHLAQKTGN
                     AKAQVLADTLDAATEKLLLNDKSPKRKAGELDNRGSHFYLTLYWAQELAAQDKDAELK
                     AAFTPLAAALTADEAKIVAELSAVQGKAANIGGYYAANPEKAAQVMRPSVTFNQALNA
                     L"
BASE COUNT          708 a          783 c          590 g          484 t
ORIGIN      
        1 aatttaaacc actataaaat caatttcacc gaaaatatgc cgccgcacat caggcacagc
       61 acctccgacc gccaccaaac gcgggaaaac catttccccc ttcctttcac gctgccgcgt
      121 tcaaacacgc caagatcgaa caaagcgcga acaaagccgc caaaatatgc cataatagcc
      181 gcgcacattc cccgcgcaat gtgttccaaa agaaaaaacc aacctacaag agaataatcc
      241 tatgactcaa aaatccacca ttgtttatac ccataccgac gaagcccccg cgctggcgac
      301 ccaatcgctg ctgccgattg tgcaggcttt tacccgccac gccgatattg atgtcaaaac
      361 tgccgacatt tccctgtccg gccgtatttt ggcggcattc cccgaatatc tgaccgaagc
      421 gcaacgcgta cccgacgcgc ttgccgaatt gggcgaactg gtaaaacaac ccgatgcaaa
      481 cgtaatcaaa ctgccgaaca tcagcgcatc cgtaccgcaa ctgaccgccg cgattaaaga
      541 attgcagtct aaaggctttg ccgttcccga ttatcctgcc gacccgcaaa ccgatgaaga
      601 aaaagccgtg cgcgaacgct acgaccgcat caaaggcagc gcggtaaacc ctgtcctgcg
      661 tgaaggcaac tccgaccgtc gcgcccccaa agcggtgaaa aactttgcca aaaaaaatcc
      721 gcacagcatg ggcgcatgga caaaagactc caaaacccac gttgccacca tgcaaagcgg
      781 cgactttttc cataacgaac aatccgttac cgtacctgaa gcgacttccg tatccatcgt
      841 gttcaccgac aaacaaggca ataaaaaaga gctgcgcgcg cctgttgccc tgaaagccgg
      901 cgaaatcatc gacgcaaccg tgatgagcaa aaaagccctg ctcgccttcc ttgccgaaca
      961 agtgaaagac gcgaaggcaa aaggcgtatt gttctcactg catatgaaag ccacgatgat
     1021 gaaagtgtcc gacccgatta tcttcggaca cgccgtcaaa gtgttcttcg cgcctgtttt
     1081 tgaaaaattc ggcgacaaac tggctgctgc cggcgtcaac gttaacaacg gcttcggcaa
     1141 cctgcttgcc aatctggaca aactggatgc ggacacccgc accgccgtcg aagccgaaat
     1201 cgccgccgtt tacgccgcca accccgattt ggcgatggtc gattccgata aaggcattac
     1261 caacctgcac gttcccagcg atgtcatcgt tgatgcttct atgcctgcga tgattcgtaa
     1321 ctccggccgt atgtgggata aagacggcaa agcgcaagac accaaagccg tgattcccga
     1381 cagcagctac gccggcgttt accaagcaac catcgacttc tgccgcgaac acggcgcatt
     1441 tgacccgaca accatgggta ctgtgcccaa cgtcggactg atggcgcaag cggcggaaga
     1501 atacggctcg cacaacaaaa cctttgaaat cgaagccgac ggccaagtcc aagtcattga
     1561 tgcggcagga aaagtcctaa tgcagcacga cgttgaagcc ggcgacatct ggcgtatgtg
     1621 ccaaaccaaa gacgctccgg ttaaagactg ggtacaactt gccgtcaacc gcgcccgtct
     1681 gagcaacacg cctgccgtgt tctggctcga cgaaaaccgt ccgcacgaca agagcctgct
     1741 cgccaaggtt aaagcctacc ttgccgaact ggataccaat ggcctcgaca tccgcgtcct
     1801 cgctcctgaa gaagccgcca agttcagctt gggtcgtctg aaaaacggcg aagacaccat
     1861 ctccgtaacc ggtaatgtct tgcgcgacta cctgaccgac ttgttcccaa ttttggaact
     1921 cggcacaagc gcgaaaatgc tgtctatcgt tccattgatg aacggcggcg gtatgtttga
     1981 aaccggcgcg ggcggttctg caccgaaaca tgttcaacaa ttcctcgaag aaaaccattt
     2041 gcgctgggac tcgctgggcg aattcctcgc actcgccgta tcgtttgaac atttggcgca
     2101 aaaaactggc aatgccaaag cccaagtcct cgccgacact ttggatgcag ccaccgaaaa
     2161 actgctgttg aacgacaaat cgcctaaacg taaagccggc gaactcgaca accgcggcag
     2221 ccatttctac ctcaccctct actgggcgca agaattggcg gcgcaagaca aagatgccga
     2281 actgaaagcc gcatttacgc cattggcagc cgctttgacc gccgacgaag cgaaaatcgt
     2341 tgccgagctt tccgccgtac aaggcaaagc ggccaacatc ggcggctact acgccgccaa
     2401 tcctgaaaaa gccgcacaag tgatgcgtcc gagcgtaacc tttaatcagg cactaaacgc
     2461 cttataagca caaaggtaaa aatgccgtct gaacattcgt cgttcagacg gcattagtta
     2521 tccctatctg cctgattatg attaaacgcc gcacccattg gatat
//
LOCUS       DAWGNT010000204         2545 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.204, whole genome shotgun sequence.
ACCESSION   DAWGNT010000204 DAWGNT010000000
VERSION     DAWGNT010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.204"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..113)
                     /locus_tag="WHR98_001884"
     CDS             complement(<1..113)
                     /locus_tag="WHR98_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003779337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEZ2308513.1"
                     /translation="MKISALDHLVLTVADIDRTIAFYTQVLGMEEVSFGNNR"
     gene            complement(159..1292)
                     /gene="carA"
                     /locus_tag="WHR98_001885"
     CDS             complement(159..1292)
                     /gene="carA"
                     /locus_tag="WHR98_001885"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEZ2308514.1"
                     /translation="MSTPALLVLADGSVFHGTSIGYEGSTSGEVVFNTSMTGYQEILT
                     DPSYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYL
                     VRNQTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAK
                     EVSCTETYEWTEGEWELGKGFVTPDEQPYHVVAYDFGVKTNILRMLASRGCRLTVVPA
                     QTSAQDVLALNPDGVFLSNGPGDPEPCTYAIEAVQKLMESGKPIFGICLGHQLISLAI
                     GAKTLKMRFSHHGANHPVQDLDSGKVVITSQNHGFAVDADTLPANARITHKSLFDNTL
                     QGIELTDKPVFCFQGHPEASPGPQDVGYLFDKFIGNMKAAKRA"
BASE COUNT          569 a          676 c          709 g          591 t
ORIGIN      
        1 cggttgttgc caaatgaaac ttcttccata cccaaaactt gcgtgtaaaa cgcaatggtt
       61 cggtcaatgt cggcaacggt cagtaccaga tggtcgagtg cgctaatctt catttcccgc
      121 tttctttttc aggcggcggc agtgccgtct gaaagccatt atgcccgttt tgccgctttc
      181 atattgccaa tgaatttgtc aaacaaatag ccgacatctt gcggaccggg gctggcttcg
      241 gggtggcctt ggaagcagaa cacaggtttg tcggtcagct cgatgccttg caaagtgttg
      301 tcaaacaagg atttgtgggt aatgcgtgcg ttagcgggca gggtgtcggc atcaacggca
      361 aaaccgtggt tttggctggt gatgacgact ttgccgctgt ccaaatcttg cacagggtgg
      421 ttcgcaccgt ggtggctgaa gcgcattttc agggttttcg cgccgatagc gaggctgatg
      481 agctggtgtc ccaagcagat gccgaaaatc ggtttgccgc tttccatcag tttttgcacg
      541 gcttcgatgg cgtaggtgca aggctcgggg tcgccggggc cgttggacag gaacacgccg
      601 tcgggattga gcgccaatac gtcttgtgcg ctcgtttggg cggggacgac ggtcaggcgg
      661 cagccgcgcg aggcgagcat acgcaggatg ttggttttca cgccgaaatc gtaggcgacg
      721 acgtggtaag gctgttcgtc aggggtaacg aaacccttgc ccaattccca ttcgccttcc
      781 gtccattcgt aagtttccgt gcaggaaact tcttttgcca agtctttgcc gaccatactg
      841 ccgaacgcgg cgatgagttc ttgcgctttt tcgattgtgg catccgcacc ggtcagaatc
      901 gcgccgcctt gcgcgccttt ttcgcgcaac agcgtggtca ggcggcgggt atcgatgtcg
      961 gcgatggcga cggtttggtt gcgtaccaaa tagtcgtgca ggctttcgga ggcgcggaag
     1021 ttgctgtgca agagcggcag gtcgcggata atcaaaccgg cggcgtaaac gctgcggctt
     1081 tcttcatctt cggcgttggt accggtattg ccgatgtgtg ggtaggtgag ggtaacgatt
     1141 tgtttgcagt aggacgggtc ggtcaggatt tcctgatagc cagtcatcga agtattgaac
     1201 acgacttcgc cggaagtcga accttcgtaa ccgattgatg tgccgtggaa tacgctgccg
     1261 tcagcgagga cgaggagggc gggggtgctc atgatgggaa tcctgttttt aataaaattc
     1321 ttgacaatgc cgtctgaagg gacttcggca gggggcatcc ggtcggaaaa atccggtcaa
     1381 aaaaaaacac gccgcgcaag atagacgcgt aacgtgcttt tcgggcaagt gcctataccc
     1441 tgaaagcagc gtattttaag acgaaacata cccgatttca agcgcaaacg cggcaggcgg
     1501 gctgatatgt tcgcgcgaaa acggaaatcc ggggcataaa accgcccgct ctgcgcccac
     1561 tatgcccgtt acgcatttcc ccacgtccgt ccggcgaaac tatgggaata cccgaatcgt
     1621 caggaatacc tgaatcgtca ggaatacctg aatcgtcagg aatacctgaa tcgtcaggaa
     1681 tacccgaacc atcattcccg cgcaggcggg aatctagacc tgtcggcaca gaaacttatc
     1741 gggtataacg gtttcttgag attttacgtc ctagattccc gcctgcgcgg gaatgacggc
     1801 atcggtttga cggtatttaa ttgaattgcg gaaattgacg gattcagtga gattggcggg
     1861 atgaagccta ccctatagcc cgccttttat agcggattaa caaaaaccgg tacgggttgc
     1921 cccgccccgg ctcaaaggga acgattccct aaggcgccca agcaccaggc gaaccggttc
     1981 cgtaccattt gtactgcctg cggcccgccg ccttgtcctg atttttgtta atctgctata
     2041 cgaacccgcc ccctcccgaa aaacgcaaaa aatgccgtcc gaaaaccttt cggacggcat
     2101 tttcgcgtga accgtcattc ccacgaaaac agaaaaccaa aatcagaaac ctaaaattcg
     2161 tcattcccac gaaagtggga atccaggact caggacctga gaaacctttt tacccgataa
     2221 gttcccgtac cgaccggtcc ggattcccgc ctgcgcggga atgacggcat cggtttgtcg
     2281 gcgtttcatt tgcccccatc ccgaaaacgc aaacaatacc gtctgaaagc tctgtaggga
     2341 gggcttcagc ccaccgattc catcaatccc acatttccgc cgttttcacc gaatccgccc
     2401 cttttcacaa tccagtccta cgcaactgaa ccgtcattcc cgcgcaggcg ggaatccgga
     2461 cttgtcggca cggaaactta tcgggtacaa cggtttcttg agattttacg tcctagattc
     2521 ccgcctgcgc gggaatgacg gcgga
//
LOCUS       DAWGNT010000205         2532 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.205, whole genome shotgun sequence.
ACCESSION   DAWGNT010000205 DAWGNT010000000
VERSION     DAWGNT010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.205"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            389..823
                     /locus_tag="WHR98_001886"
     CDS             389..823
                     /locus_tag="WHR98_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308515.1"
                     /translation="MDNKKEFINNLTNRYMWIYPLVLNILFLPFYQSYQSFFIALGCL
                     FALVRKMQSLDFKLQNHIVLLNIKSAWADKKVFLIRIVVSWLAVMEIWMCFISESSTW
                     VCGAFCLNSEILEKIFRGFGYSGSLYFLFILMIDLNKLRESI"
     gene            1099..1818
                     /locus_tag="WHR98_001887"
     CDS             1099..1818
                     /locus_tag="WHR98_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308516.1"
                     /translation="MKNKNYLLVFIVLHIALIVINIVFGYFVFLFDFFAFLFFANVFL
                     AVNLLFLEKNIKNKLLFLLPISIIIWMVIHISMINIKFYKFEHQIKEQNISSITGVIK
                     PHDSYNYVYDSNGYAKLKDNHRYGRVIRETPYIDVVASDVKNKSIRLSLVCGIHSYAP
                     CANFIKFAKKPVKIYFYNQPQGDFIDNVIFEINDGNKSLYLLDKYKTFFLIENSVCIV
                     LIILYLKFNLLLYRTYFNELE"
     gene            1805..1978
                     /locus_tag="WHR98_001888"
                     /pseudo
     CDS             1805..1978
                     /locus_tag="WHR98_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258767.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
     gene            2036..>2532
                     /locus_tag="WHR98_001889"
     CDS             2036..>2532
                     /locus_tag="WHR98_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEZ2308517.1"
                     /translation="MIASRLSGNISSAIQEHKDGKVNINRFQNILADLYSLGGLGSTL
                     IEKNGNMQSWGIPLAIAGDIIAATAIATGDTGTISTEEFYNFDNWKGFGYELFEDWSR
                     WVYDWLPDGWNLWKELDRNRSGQYHIYDPLALDLDGDGIETVAAKGFSGSLFDHNGNG
                     IRTATG"
BASE COUNT          844 a          345 c          464 g          879 t
ORIGIN      
        1 ggagcagctc tttctgtact tttttcttta atttgcagtg tgttatcttc atatttcggg
       61 ggtaacatat ctgctaatct agtacagcct caaacaaaaa agagaaattt taatttcgct
      121 aaatcgcata aagattaatc aagagtatca ttaaatgata tgagtgagca tctataatgc
      181 caagaagagt tgttaagaca taacgattat tgaaatagat tgtaaaatag atacttagat
      241 agtctgaaaa acggatttgt gaaacttttt attacgcgcc atcatttgaa aatgaaactt
      301 aaaaaacact tatcataata aatattttct ttacgttgtt tgctaataaa ctcagtgcaa
      361 tatcagcgca atattttatg gaaattttat ggataacaaa aaagaattta ttaataattt
      421 aacaaatagg tatatgtgga tctatccatt ggtcttaaat attctatttc taccttttta
      481 ccagtcctac caatcttttt ttattgcgct tggttgtttg tttgcactgg ttagaaaaat
      541 gcaaagctta gattttaaat tacaaaatca tattgtattg ttaaatataa aaagtgcttg
      601 ggcagataaa aaagtatttt tgattaggat agtagtgtca tggttggcag taatggaaat
      661 atggatgtgt tttatttcgg aatcatcaac gtgggtatgc ggtgcttttt gtttaaatag
      721 tgaaatattg gaaaaaattt ttcgtggctt tggttattct ggtagtttat attttttatt
      781 tatattgatg attgatctca ataagttaag agagagtatt tgaatttcat tttttgtttg
      841 acttaaactc aaggagagta acaatgattg gtagtggtga tactaaacaa tgcaaaaaat
      901 tttctgcgtg tgatggaaaa taccacgtct acgatcccct cgccctagac ttggacggcg
      961 acggcataga aacagtcacc gccaaaggct tttcaggcag cctgaagact gagagagtga
     1021 atacgatgag tatacactct atgccactaa attgatattc actaaatcat accagctata
     1081 ttttatttaa tgagacatat gaaaaataaa aattatttac tagtatttat agttttacat
     1141 atagccttga tagtaattaa tatagtgttt ggttattttg tttttctatt tgattttttt
     1201 gcgtttttgt tttttgcaaa cgtctttctt gctgtaaatt tattattttt agaaaaaaac
     1261 ataaaaaaca aattattgtt tttattgccg atttctatta ttatatggat ggtaattcat
     1321 attagtatga taaatataaa attttataaa tttgagcatc aaataaagga acaaaatata
     1381 tcctcgatta ctggggtgat aaaaccacat gatagttata attatgttta tgactcaaat
     1441 ggatatgcta aattaaaaga taatcataga tatggtaggg taattagaga aacaccttat
     1501 attgatgtag ttgcatctga tgttaaaaat aaatccataa gattaagctt ggtttgtggt
     1561 attcattcat atgctccatg tgccaatttt ataaaatttg caaaaaaacc tgttaaaatt
     1621 tatttttata atcaacctca aggagatttt atagataatg taatatttga aattaatgat
     1681 ggaaacaaaa gtttgtactt gttagataag tataaaacat tttttcttat tgaaaacagt
     1741 gtttgtatcg tattaattat tttatattta aaatttaatt tgcttttata taggacttac
     1801 ttcaatgagt tggaatagtt ttggtaattt tatgagcgca cgctcatccg cgttagcaga
     1861 atttggaaat atggttgcta atttagtttc tgcaaaaaat gagaaagata tctcgaaacg
     1921 taatgaatat tacaaacaag ctggttatag tgcattatta gcatttggta atttggctag
     1981 taatattgca ccaggtagta cgtcatcgca tattgtaaac ggaacaaatg cctctgtgat
     2041 tgcaagccgt ctctctggaa atatatcttc agctattcag gagcataaag atggtaaagt
     2101 taatatcaac cgttttcaaa atattttagc ggatttatat tcattgggag ggttaggaag
     2161 tacattaata gagaagaatg gaaatatgca gagttggggg attccattag caattgctgg
     2221 agatataatt gcagcaacgg ctattgccac aggagatact ggtacgatat ctacagagga
     2281 attttataat tttgacaact ggaaaggttt tgggtatgag ctatttgaag actggtctcg
     2341 ttgggtatac gactggctgc ccgacggctg gaatctgtgg aaagaattgg acagaaaccg
     2401 ttcaggccaa taccacatct acgaccccct cgccctagac ctagacggcg acggcataga
     2461 aacagtcgcc gccaaaggct tttcaggcag cctcttcgac cataacggca acggcatccg
     2521 caccgccact gg
//
LOCUS       DAWGNT010000206         2520 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.206, whole genome shotgun sequence.
ACCESSION   DAWGNT010000206 DAWGNT010000000
VERSION     DAWGNT010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.206"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(22..756)
                     /gene="lptB"
                     /locus_tag="WHR98_001890"
     CDS             complement(22..756)
                     /gene="lptB"
                     /locus_tag="WHR98_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEZ2308518.1"
                     /translation="MSANVSRLVVQNLQKSFKKRQVVKSFSLEIESGEVVGLLGPNGA
                     GKTTSFYMIVGLIAADAGSVMLDGQELRHLPIHERARLGVGYLPQEASIFRKMTVEQN
                     IRAILEISTKDKSRIDGEVEKLLADLNIERLRNNPAPSLSGGERRRVEIARVLAMKPH
                     FILLDEPFAGVDPIAVIDIQKIIGFLKSRGIGVLITDHNVRETLSICDRAYIISDGTV
                     LASGKPDDLVGNEQVRSVYLGKNFKY"
     gene            complement(830..1360)
                     /gene="lptA"
                     /locus_tag="WHR98_001891"
     CDS             complement(830..1360)
                     /gene="lptA"
                     /locus_tag="WHR98_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HEZ2308519.1"
                     /translation="MIQKICKLFVLIAFFSASPAFALQSDSRQPIQIEADQGSLDQAN
                     QSTTFSGNVVIRQGTLNISAARVNVTRGGKGGESVRAEGSPVRFSQTLDGGKGTVRGQ
                     ANNVAYSSAGSTVVLTGNAKVQRGGDVAEGAVITYNTKTEVYTISGSTKSGAKSASKS
                     GRVSVVIQPSSTQKSE"
     gene            complement(1341..1922)
                     /gene="lptC"
                     /locus_tag="WHR98_001892"
     CDS             complement(1341..1922)
                     /gene="lptC"
                     /locus_tag="WHR98_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HEZ2308520.1"
                     /translation="MKVRWRYGIAFPLILAVALGSLSAWLGRISEVEIEEVRLNPDEP
                     QYTMDGLDGRRFDEQGYLKEHLSSKGAKQFPESSDIHFDSPHLVFFQEGRLLYEVGSD
                     EAVYHTENKQVLFKNNVVLTKTADGKRQAGKVEAEKLHVDTESQYAQTDTPVSFQYGA
                     SHGQAGGMTYDHKTGMLNFSSKVKATIYDTKDM"
     gene            complement(1919..2455)
                     /locus_tag="WHR98_001893"
     CDS             complement(1919..2455)
                     /locus_tag="WHR98_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEZ2308521.1"
                     /translation="MQAISPELQARAAKIKLLILDVDGVLTDGRIFIRDNGEEIKSFH
                     TLDGHGLKMLQASGVQTAIITGRDAPSVGIRVKQLGINYYFKGISDKRAAYEELRAQV
                     GVEEAECAFVGDDVVDLPVMVRCGLPVAVPDAHWFTLQHAAYIAKRPGGAGAVREVCD
                     LIMQAQGTLGAALNEYIK"
BASE COUNT          536 a          665 c          660 g          659 t
ORIGIN      
        1 tcgcccgtct gaaaaatatt ttcaatattt gaagttctta cccagataaa cagaacgaac
       61 ctgttcgttt ccgaccaaat catcaggttt tcccgatgcc aacaccgtgc cgtctgaaat
      121 aatgtaggcc cgatcgcaga tgctgagggt ttcgcgtacg ttgtggtcgg taattaatac
      181 gccgataccg cgcgacttga gaaatccgat gattttttgg atgtcgatga cggcgatggg
      241 atcgacgccg gcaaaaggct cgtccaacaa aataaaatgc ggtttcatgg caagtacgcg
      301 ggcgatttcg acgcgtcggc gttcgccgcc cgacaaagat ggggcaggat tattgcgcaa
      361 acgctcgata ttcaggtcgg caagcagttt ttcaacttcg ccgtcgatgc ggcttttgtc
      421 tttggtactg atttctaaaa tggcgcggat gttttgttcg acggtcattt tacggaaaat
      481 agaggcttcc tgcggtaggt agccgacacc caggcgggcg cgttcgtgta tgggcaggtg
      541 acgcaattcc tgcccgtcca gcatcacgct gcccgcatcg gcggcaatga gtccaacaat
      601 catgtagaag ctggtggttt tacccgcacc gttgggcccg agcaggccga cgacttcccc
      661 gctttcgatt tcaagggaga agcttttaac gacttggcgt tttttgaaac ttttttgcag
      721 gttttgaaca acaaggcggc tgacgtttgc gctcataaat atctcttcaa tatcttcggt
      781 cggcaaatgc cgtccgaacc aggtttatgt ttcagacggc attttgggat tattcggatt
      841 tttgcgtact cgaaggctgg ataacgacgc tgaccctgcc ggatttggaa gcggattttg
      901 cgccggattt tgtgctgccg ctgatggtat agacttcggt tttggtgttg tatgtaatca
      961 ccgcaccttc ggcgacatcg ccgccgcgct gtactttggc attaccggtt aagactacgg
     1021 tgctgcctgc agatgaataa gcaacgttgt ttgcctgtcc gcgcaccgtg cctttgccgc
     1081 cgtccaatgt ctggctgaag cggactggcg aaccttccgc cctcacggat tcgccgcctt
     1141 tgccgccgcg tgtaacattg acgcgggcgg cggaaatatt gagcgtaccc tgtctgatga
     1201 cgacgtttcc gctgaatgtg gtgctttggt tggcttgatc gagcgaacct tggtcggcct
     1261 caatctgaat aggctgcctg ctgtcgcttt gaagggcaaa agcgggggac gccgaaaaaa
     1321 atgctattaa aacaaatagc ttacatatct tttgtatcat aaatcgtggc tttcacttta
     1381 gatgagaagt tcaacatgcc tgttttgtgg tcgtaagtca tgccgcccgc ctgaccgtgc
     1441 gatgcaccat attggaaact gacaggcgta tcggtttggg catattgaga ttcggtatcg
     1501 acgtgcagct tttcggcttc aactttaccc gcctgccgtt tgccgtcggc ggttttggtc
     1561 agcacaacgt tgtttttaaa aagaacctgt ttgttttcgg tatggtaaac ggcttcatcg
     1621 ctgccgactt cgtacaacaa cctgccttct tggaagaaca cgagatgcgg tgagtcgaaa
     1681 tgaatgtcgc tgctttcggg aaactgtttc gcgcccttcg aactcaaatg ttctttcaag
     1741 tatccctgtt cgtcaaaccg cctgccatcc aatccgtcca ttgtgtattg cggttcgtcg
     1801 ggattgagcc tgacttcttc aatctcgact tcgctgatgc gtcccaacca tgccgacagg
     1861 ctgcccaagg caaccgccaa tatcaatggg aacgcaattc cgtaccgcca tcttactttc
     1921 atttgatgta ctcgttcaaa gccgcgccca aagtcccttg cgcctgcata atcaggtcgc
     1981 acacttcgcg caccgcgccc gcaccgccgg ggcgtttggc aatataggcg gcgtgttgca
     2041 gcgtaaacca atgcgcgtcg gggacggcaa ccggcaatcc gcagcgtacc ataacgggca
     2101 aatcgaccac gtcgtcgccg acaaaggcac actcggcttc ttccacgccg acctgagcgc
     2161 gcagctcttc atacgcggcg cgtttgtccg aaatgccttt gaagtagtaa tttatgccca
     2221 actgtttgac gcggatgccg acggagggcg cgtcccgacc tgtgataatc gcagtctgca
     2281 cgccgcttgc ctgaagcatt ttcagaccgt gtccgtccag tgtgtgaaac gatttgattt
     2341 cttcgccgtt atcgcggata aagatgcgcc cgtcggtcaa aacgccgtcc acatccagga
     2401 tcaacagttt gattttggcg gcgcgcgcct gtaattcggg agaaattgcc tgcatgggat
     2461 ttccttgttt tcagacggca tatcttacca caaatgccgt ctgaaacggc tgcaacgcct
//
LOCUS       DAWGNT010000207         2475 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.207, whole genome shotgun sequence.
ACCESSION   DAWGNT010000207 DAWGNT010000000
VERSION     DAWGNT010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2475
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.207"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            35..1390
                     /locus_tag="WHR98_001894"
     CDS             35..1390
                     /locus_tag="WHR98_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC45 family MFS transporter"
                     /protein_id="HEZ2308522.1"
                     /translation="MSEYTPQTAKQGLPALAKSTIWMLSFGFLGVQTAFTLQSSQMSR
                     IFQTLGADPHNLGWFFILPPLAGMLVQPIVGHYSDRTWKPRLGGRRLPYLFYGTLIAV
                     IVMILMPNSGSFGFGYASLAALSFGALMIALLDVSSNMAMQPFKMMVGDMVNEEQKSY
                     AYGIQSFLANTGAVVAAILPFVFAYIGLANTAEKGVVPQTVVVAFYVGAALLIITSAF
                     TIFKVKEYDPETYARYHGIDVAANQEKANWFELLKTAPKAFWTVTLVQFFCWFAFQYM
                     WTYSAGAIAENVWHTTDASSVGYQEAGNWYGVLAAVQSVAAVICSFVLAKVPNKYHKA
                     GYFGCLALGALGFFSVFFIGNQYALVLSYTLIGIAWAGIITYPLTIVTNALSGKHMGT
                     YLGLFNGSICMPQIVASLLSFVLFPMMGGLQANMFLVGGVVLLLGAFSVFLIKETHGG
                     V"
     gene            1394..2404
                     /locus_tag="WHR98_001895"
     CDS             1394..2404
                     /locus_tag="WHR98_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HEZ2308523.1"
                     /translation="MSDTPATRDFGLIDGRAVTGYVLSNRRGTRVCVLDLGGIVQEFS
                     VLADGVRENLVVSFDDAASYADNPFQINKQIGRVAGRIRGAAFDINGRTYRVEANEGR
                     NALHGGSHGLAVTRFNAVAADGRSVVLRSRLQQSADGYPNDLDLDISYRLDEDDRLTV
                     SYRATALGDTVFDPTLHIYWRLDAGLHDAVLHIPQGGHIPADAEKLPVSTVSDDLEVF
                     DFSRPKPLDAAVAALRRETGRAGFDDAYRVPSDIGRPAAVLQAGRRRRISIYSDRNGL
                     VIFTAAPQDFARHDAGVYDALATEAQTLPDSLNWPEFGNIRLNKGDTREATIAYGIES
                     LS"
BASE COUNT          467 a          665 c          737 g          606 t
ORIGIN      
        1 actatacttt tcaaatcaaa aaaggattta ccttatgtcg gaatatacgc ctcaaacagc
       61 aaaacaaggt ttgcccgcgc tggcaaaaag cacgatttgg atgctcagtt tcggctttct
      121 cggcgttcag acggccttta ccctgcaaag ctcgcaaatg agccgcattt ttcaaacgct
      181 aggcgcagac ccgcacaatt tgggctggtt tttcatcctg ccgccgctgg cggggatgct
      241 ggtgcagccg attgtcggcc attactccga ccgcacttgg aagccgcgtt taggcggccg
      301 ccgtctgccg tatctgtttt atggcacgct gattgcggtt attgtgatga ttttgatgcc
      361 gaactcgggc agcttcggtt tcggctatgc gtcgctggcg gctttgtcgt tcggcgcgct
      421 gatgattgcg ctgttggacg tgtcgtcgaa tatggcgatg cagccgttta agatgatggt
      481 cggcgatatg gtcaacgagg agcagaaaag ctacgcctac gggattcaaa gtttcttagc
      541 gaatacgggc gcggtcgtgg cggcgattct gccgtttgtg ttcgcgtata tcggtttggc
      601 gaacaccgcc gagaaaggcg ttgtgccaca aaccgtggtc gtagcattct atgtgggcgc
      661 ggcattactg attattacca gtgcgttcac aatcttcaaa gtcaaagaat acgacccgga
      721 aacctatgcc cgttaccacg gcatcgatgt cgccgcgaat caggaaaaag ccaactggtt
      781 cgaactctta aaaacggcac ctaaagcgtt ttggacggtt actctggtac agtttttctg
      841 ctggttcgcc ttccaatata tgtggactta ctcggcaggc gcgattgcgg aaaacgtctg
      901 gcacaccact gatgcgtctt ccgtaggtta tcaggaggcg ggcaactggt acggcgtttt
      961 ggcggcggtg cagtcggttg cggcggtgat ttgttcgttt gtattggcga aagtgccgaa
     1021 taaataccat aaggcgggtt atttcggctg tttggctttg ggcgcgctcg gctttttctc
     1081 cgttttcttc atcggcaacc aatacgcgct ggtgttgtct tataccttaa tcggcatcgc
     1141 ttgggcgggc attatcactt atccgctgac gattgtaacc aacgccttgt cgggcaagca
     1201 tatgggcact tacttgggcc tgtttaacgg ctctatctgt atgccgcaaa tcgtcgcttc
     1261 gctgttgagt ttcgtgcttt tcccgatgat gggcggtttg caggccaata tgttcttggt
     1321 agggggcgtc gtcctgctgc tgggcgcgtt ttccgtgttc ctgattaaag aaacacacgg
     1381 cggggtttga gcgatgagcg atacccccgc tacccgcgat ttcggtctga tcgacgggcg
     1441 tgccgtaacc ggctatgtgc tgtccaaccg gcgtggtacg cgtgtctgcg tgctggactt
     1501 gggcgggatt gtgcaggaat tttccgtttt ggcagacggc gtgcgcgaaa acctcgtggt
     1561 gtcgttcgac gatgcggctt cctatgcgga caatccgttt cagattaaca agcagatagg
     1621 gcgcgtggcc ggacgcatcc gcggtgcggc gttcgacatc aacggcagga cttaccgcgt
     1681 ggaggccaac gaaggcagga acgcgctgca cggcggttcg cacgggctgg ccgttacccg
     1741 tttcaacgcg gtggcggcag acggccgttc ggtggtgctg cgcagccgcc tgcaacagtc
     1801 ggccgacggt tatcccaacg atttggattt ggatatttcc taccgcttgg acgaggacga
     1861 ccggcttacc gttagctatc gcgccaccgc gctcggcgac acggtgttcg acccgacgct
     1921 gcacatttac tggcggctgg acgcgggcct gcacgatgcg gttctgcata ttccgcaggg
     1981 cggacatatt ccggccgatg ccgaaaaact gcccgtctca acggtttcag acgacctcga
     2041 agtatttgat ttcagccggc ccaagccgct ggatgccgcc gttgccgccc tgcgccgcga
     2101 aacgggtcgg gccggttttg acgacgctta ccgcgtgccg tccgatatag gccgtcccgc
     2161 cgctgtgttg caagccggac gccgccgtcg tatcagcata tacagcgacc gcaacggctt
     2221 ggtcatcttt accgccgccc cgcaggattt cgcgcggcac gatgcgggcg tttacgacgc
     2281 gctggcgacc gaggcgcaga cgctgcccga cagcctgaat tggcccgagt tcggcaatat
     2341 tcgtctgaac aagggtgata ccagggaggc gacgattgct tacggcatcg aatccctttc
     2401 ttaggagctt cctaacaccg gttgcagacg gcctttttat agtggattaa caaaaaccgg
     2461 tacggcgttg cctcg
//
LOCUS       DAWGNT010000208         2471 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.208, whole genome shotgun sequence.
ACCESSION   DAWGNT010000208 DAWGNT010000000
VERSION     DAWGNT010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.208"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(13..819)
                     /locus_tag="WHR98_001896"
     CDS             complement(13..819)
                     /locus_tag="WHR98_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017201277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HEZ2308524.1"
                     /translation="MPTVFIFLTAVYAGLGAFAWHCQQQGLGRDYPWKTELPVLGAAL
                     TVHGAALLMPVIQDKIIIMGFGYSGSLIVWMMLFIYFAGSFFYSLRGVQLLLYPCAAL
                     MLLSGLVFPGKFSGYEITDLPFMLHIGTSLLAYGLFGIATLLSVLTLLLNRSLHRRNF
                     SKLAGFLPSLLSLEKLMFQAMWAGFILLTYSVVSGTFFAEAVFGKPMTFTHKTVFGIL
                     SWLIYGGLLLKHSMTAWRGKKAAVWTIIGFVSLMIAYMGSKFVLEIILKR"
     gene            1040..2410
                     /gene="ffh"
                     /locus_tag="WHR98_001897"
     CDS             1040..2410
                     /gene="ffh"
                     /locus_tag="WHR98_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019272084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEZ2308525.1"
                     /translation="MLDNLTGRFSNVLKNIRGQAKLTEDNIKEALREVRLALLEADVA
                     LPVVKEFVNNVKEKALGQEVVGSLTPDQAFIGVVNKALTELMGRENKTLDLSVAPPAV
                     VLMAGLQGAGKTTTAGKLARLLKNDQKKKVLVVSADVYRPAAIEQLRLLAEQVGVDFF
                     PSDTNQKPVEIATAAVDYAKKHFYDVLMVDTAGRLAIDEEMMNEIKALHAAVNPVETL
                     FVIDAMLGQDAVNTAQAFNEALPLTGVVLTKMDGDSRGGAALSVRHVTGKPIKFIGVG
                     EKINGLEPFHPDRLASRILGMGDVLTLIEDVQKGIDEEAAAKMAKKLQKGKGFDLNDF
                     KEQIQQMRNMGGLENLMSKMPGELGQISKQIPEGTAEKAMGKVEAIINSMTPKERANP
                     ALLKASRKRRIAMGAGTTVQEVNKLLKQFEQMQQMMKMFSGNGLGKLMRLAKGMKGMK
                     GMFPGL"
BASE COUNT          683 a          625 c          639 g          524 t
ORIGIN      
        1 tgttggctct tcttatcttt tcagaatgat ttccaatacg aacttgctgc ccatataggc
       61 aatcataagg ctgacaaatc cgatgatggt ccacacggcg gcttttttac cgcgccatgc
      121 ggtcatgctg tgcttgagca gcagtccgcc gtaaatcagc catgacaata tgccgaatac
      181 ggttttatgg gtaaaggtca tgggtttgcc gaatacggct tcggcaaaaa atgttccgct
      241 gacgacggaa taagtcagca ggatgaaacc tgcccacatg gcctggaaca tgagtttttc
      301 caaactgagc agcgacggca ggaatcctgc gagcttggag aagttcctgc ggtgcaggct
      361 ccgattcagc agcagggtca aaacggacaa taatgttgcg atgccgaaca gcccgtatgc
      421 gagcagcgaa gttccgatat gcagcataaa gggaaggtcg gtaatttcat atcccgagaa
      481 ttttccagga aaaaccaaac ctgacagcag catcagtgcg gcgcaaggat acagcagcaa
      541 ctgcactccg cgcagcgaat aaaagaagct gccggcaaaa taaataaaca gcatcatcca
      601 aacaatcagg ctgccggaat acccaaagcc cataatgatg attttgtctt gaatgaccgg
      661 cataagcagt gccgcgccat ggacggtcaa tgccgcgccc aaaaccggca attccgtctt
      721 ccacgggtaa tcccggccga gcccctgctg ttggcagtgc catgcaaatg cacccaatcc
      781 tgcgtaaacc gccgtcaaaa agatgaaaac tgtcggcatg gtggactttc tctaatctat
      841 actgttgcgc tgtatgcggc cgcttatgaa atattggaac ttttaacgtt ggaattgtaa
      901 aatccccgtt tcgggcaagc cttgacggat ttgccgatat gctgtccggc acacaagccg
      961 catcaaatta ttttgatttt attttaacaa agaatgcccc tgatggggca agctattctt
     1021 attcagacca aggaccagta tgttagacaa tttaaccggc cgcttcagca atgttctcaa
     1081 aaacatccgc gggcaggcca aactgaccga agacaatatt aaagaagcct tgcgcgaagt
     1141 ccgcctcgcc ctgcttgagg cggatgtcgc cctgcctgtc gtcaaagagt tcgtcaacaa
     1201 cgtcaaagaa aaggccctcg gtcaggaagt ggtgggcagc ctgacgccgg atcaggcatt
     1261 tatcggcgtg gtcaacaaag ccctgaccga gctgatgggc agggaaaaca aaacgctgga
     1321 tttgtcggtt gcgccgcccg ccgtcgtgtt gatggcaggt ttgcagggcg cgggcaagac
     1381 gacgaccgcc ggcaaactcg cccgcctgct gaaaaacgat cagaagaaaa aggttttggt
     1441 cgtatctgcc gacgtttacc gccctgccgc gattgaacaa ctgcgtctgt tggccgaaca
     1501 ggtcggcgtg gactttttcc catccgatac caaccaaaaa ccggttgaga ttgcaactgc
     1561 cgccgtcgat tacgccaaaa aacattttta cgatgtattg atggtcgata ccgccggccg
     1621 tttggcaatc gatgaggaga tgatgaacga aatcaaagcc cttcacgcgg cggttaaccc
     1681 ggtggaaact ttgttcgtca tcgatgcgat gctgggtcag gatgcggtga acactgctca
     1741 ggcatttaat gaagccctgc cgctgaccgg tgtcgtattg accaagatgg acggcgattc
     1801 gcgcggcggc gcagctttgt ccgtgcgcca cgtaaccggc aagccgatta aatttatcgg
     1861 tgtcggcgaa aaaatcaacg gcctcgaacc tttccacccc gaccgtcttg ccagccgtat
     1921 cctcggcatg ggcgacgtat tgaccctgat tgaagacgtc caaaaaggta ttgatgaaga
     1981 agccgccgcc aaaatggcga aaaagctaca aaaaggcaaa ggcttcgacc tcaacgactt
     2041 taaagaacaa atccagcaaa tgcgcaatat gggcggtttg gaaaacctga tgtcgaaaat
     2101 gccgggcgaa ctgggtcaaa tatcgaaaca aatccccgaa ggaacggctg aaaaagcgat
     2161 gggcaaagtg gaagccatca tcaactcgat gactccaaaa gaacgcgcca accctgccct
     2221 gctcaaagcc agccgcaaac gccgtattgc aatgggtgcg ggcacgaccg tacaggaagt
     2281 gaacaaattg ctcaaacagt ttgaacaaat gcaacaaatg atgaagatgt tcagcggcaa
     2341 cggcttgggc aaactgatgc gcttggccaa aggcatgaag ggaatgaaag gaatgttccc
     2401 gggtttgtaa gccgatttga ccgaaaacgc cgtctaaaat ttcagacggc gtttttgttt
     2461 tatattctga t
//
LOCUS       DAWGNT010000209         2453 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.209, whole genome shotgun sequence.
ACCESSION   DAWGNT010000209 DAWGNT010000000
VERSION     DAWGNT010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.209"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(118..1569)
                     /locus_tag="WHR98_001898"
     CDS             complement(118..1569)
                     /locus_tag="WHR98_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HEZ2308526.1"
                     /translation="MLSFLSGLLSLGIEVLWVRMFSFAAQSVPQAFSFTLACFLTGIA
                     VGAYFGKRICRSRFVDIPFIGQCFLWAGIADFLILGAAWLLTGFSGFVHHAGIFITLS
                     AVVRGLIFPLVHHVGTDGNKSGRQVSNVYFANVAGSALGPVLIGFVILDFLSTQQIYL
                     LICLISAAVPLFCTLFQKSLRLNAVSVAVSLMFGILMFLLPDSVFQNIADRPDRLIEN
                     KHGIVAVYHRDGDKVVYGANVYDGAYNTDVFNSVNGIERAYLLPSLKSGIRRIFVVGL
                     STGSWARVLSAIPEMQSMIVAEINPAYRSLIADEPQIAPLLQDKRVEIVLDDGRKWLR
                     RHPDEKFDLILMNTTWYWRAYSTNLLSAEFLKQVQSHLTPDGIVMFNTTHSPHAFATA
                     VHSIPYTYRYGHMVVGSATPVVFPNKELLKQRLSRLIWPESGRHVFDSSTVDAAAQKV
                     VSRMLIQMTEPSAGAEVITDDNMIVEYKYGRGI"
     gene            complement(1592..2212)
                     /locus_tag="WHR98_001899"
     CDS             complement(1592..2212)
                     /locus_tag="WHR98_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HEZ2308527.1"
                     /translation="MNSTASKTLKGLSLVFFASGFCALIYQVSWQRLLFSHIGIDLSS
                     ITVIISVFMVGLGVGAYFGGRIADRFPSSIIPLFCIAEVSIGLFGLVSRGLISGLGHL
                     LVEADLPIIAAANFLLLLLPTFMMGATLPLLTCFFNRKIHNVGESIGTLYFFNTLGAA
                     LGSLAAAEFFYVFFTLSQTIALTACFNLLIAASVWLRYRKDGYSEH"
BASE COUNT          769 a          580 c          571 g          533 t
ORIGIN      
        1 gaataagaat tcgggacaaa atgtttaaac cattttgtcc cgactgctgt gatgcggttt
       61 ttttgaacta gcaggacgtt acctaaaacc tgcgttgcct gaaacccttt aagacggtta
      121 aatccctctg ccgtatttgt attctacaat catattatcg tcggtaataa cttccgcccc
      181 agccgaaggt tccgtcatct gaatcagcat acgagagaca accttttgtg ctgcagcatc
      241 cacggtgctg ctgtcaaata cgtgcctgcc gctttccggc caaatcaacc gggagagacg
      301 ttgcttgagc agttctttat tagggaaaac taccggggtt gccgagccga ctaccatatg
      361 cccatagcgg tatgtatagg gaatactgtg tacggcggta gcaaaagcat gcgggctgtg
      421 cgtggtatta aacattacaa taccatccgg ggtaaggtgg ctttgcacct gttttaaaaa
      481 ttccgcactc aacaggttgg tggaataggc acgccagtac caagtcgtat tcatcaaaat
      541 caggtcgaat ttttcatcag gatggcgacg cagccatttc ctaccgtcat ccaatacaat
      601 ttcaacacgt ttgtcctgca aaagcggggc gatttgcggc tcgtccgcga taaggctacg
      661 gtatgccgga ttgatttccg caacaatcat cgactgcatt tccggaatgg cagacaagac
      721 gcgcgcccac gaacctgtac tcaatccaac gacgaaaatg cggcgtatgc cagacttcag
      781 ggagggtagc agataggcac gttcgatgcc gttgacacta ttgaatacat cggtattgta
      841 tgcgccgtcg tatacattcg ccccataaac aaccttatca ccatctctat ggtaaaccgc
      901 aacaatgccg tgtttgtttt caatcagcct atccggacgg tcagcaatat tttgaaagac
      961 agaatccggc agtaggaaca tgaggatgcc gaacattagg gaaactgcta ccgacactgc
     1021 attcagtcgg agactttttt ggaacagtgt acaaaacaaa gggacagcag cagaaatcaa
     1081 acagatgagc aggtaaatct gttgggtgga caagaaatca agtatcacaa agccgataag
     1141 gaccggaccc aatgcactgc cggcaacgtt ggcgaaataa acattggaaa cctgtcgtcc
     1201 ggatttgttg ccatccgtac ccacatggtg tacgagcggg aaaatcaacc ctctgacgac
     1261 ggcagacagg gtaatgaaga taccggcgtg gtggacgaag ccggaaaaac ccgtcaacaa
     1321 ccacgcagca cccaaaatca aaaagtcggc aatacccgcc cacaagaagc actgcccgat
     1381 aaagggaata tcaacaaagc ggctgcggca aatccgtttg ccaaaatacg cgccgacggc
     1441 gataccggtc agaaaacagg caagggtaaa tgaaaatgcc tgaggcacgg actgtgctgc
     1501 gaacgaaaac atcctcaccc acaagacttc tatacccaag ctcaataagc cgctaaggaa
     1561 agaaagcata taaatcaaac tagtattcgg tttagtgttc actatatcca tcctttctgt
     1621 aacgcagcca tactgaagca gcaatcagaa ggttaaagca ggctgtcagc gcaatggttt
     1681 gggagagggt aaaaaagacg tagaaaaatt cggcggcggc aagcgatccg agtgccgcac
     1741 ccaaagtgtt gaaaaaatat aaggtaccga tagactcgcc aacattatgt attttccggt
     1801 taaaaaaaca ggtcagcaag ggcaaggtcg cgcccatcat aaaggtagga agcagcaata
     1861 agaggaaatt ggcagcagcg atgatgggca aatcagcctc aactaaaaga tgccccaagc
     1921 cggaaatcag acccctgctt accaaaccga acagaccgat ggatacttca gcgatgcaaa
     1981 acagggggat gatacttgaa ggaaaacggt cagcaatgcg tccaccgaaa tacgcaccta
     2041 cacccaagcc gaccataaat acagaaataa tgacagtaat cgaactcaaa tcgataccta
     2101 tgtgactgaa tagaagcctc tgccagctga cctggtaaat cagggcgcag aatccagagg
     2161 cgaaaaacac cagcgacaat cctttcaggg ttttacttgc ggtcgaattc atattttcta
     2221 ttttcaaata ggcggaacta taaatgaaat gtatcaatgt gtaaacattt gtattaaccg
     2281 taggaaatca ccgtattgct caaactgcag gccgggaaaa taaactcgta agcccgcaaa
     2341 cggcgtatca ctgttcaaac tgctgtgcgg cttcacggtg ttataaaaat aatggggctg
     2401 tcctggacaa ctaagataaa ctcgatttta ctaattgttt taaaatggaa att
//
LOCUS       DAWGNT010000210         2431 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.210, whole genome shotgun sequence.
ACCESSION   DAWGNT010000210 DAWGNT010000000
VERSION     DAWGNT010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2431
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.210"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(227..1861)
                     /gene="groL"
                     /locus_tag="WHR98_001900"
     CDS             complement(227..1861)
                     /gene="groL"
                     /locus_tag="WHR98_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019271863.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEZ2308528.1"
                     /translation="MAAKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAF
                     GGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAE
                     GMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGA
                     IIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNP
                     FVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAV
                     KAPGFGDRRKAMLQDIAILTGGQVISEEVGLSLEKATLEDLGQAKRIEIGKENTTIID
                     GFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHTGNADQDAGVQIVLRAVESP
                     LRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAA
                     SIAGLMLTTDCMIAEIPEEKPAMPDMGGMGGMGGMM"
     gene            complement(1954..2244)
                     /locus_tag="WHR98_001901"
     CDS             complement(1954..2244)
                     /locus_tag="WHR98_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEZ2308529.1"
                     /translation="MTIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVG
                     AGKIGKDGARRPLDVKVGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVEK"
BASE COUNT          491 a          644 c          633 g          663 t
ORIGIN      
        1 ttcgcgggaa tgacggcgga aaggttgctg tttttccgat aaattcctgc cgctcttcgt
       61 ttttgggatg gcgggaaata aaacaaaagc gcgcgtatca aaaaataaca atgcaaagaa
      121 cggtgttggc aattttaagg tttgcgcctt agccgcactt attcgcaaaa aaaccgcacg
      181 gcgttgaccg tgcggcttgt tgtctgaagg cttcagacgg cattgcttac atcatgccac
      241 ccataccgcc cataccgccc atgtcaggca tagcaggttt ttcttcaggg atttcagcga
      301 tcatgcaatc agtggtcagc atcaggccgg cgatagatgc ggcgtgttgc agcgcggaac
      361 gggttacttt ggcagggtcg agtacgccca tttcgatcat gtcgccgtat tcgccggagc
      421 cagcgttgta accgtagttg cctttgcctt ccaacacttt gttcacgact acgctaggct
      481 cgccgcctgc gttggcaacg atttgacgca gcggagactc aacggcgcgc aatacgattt
      541 gtacgcctgc gtcttggtcg gcattgccgg tgtgcaggtt ttccagagca gcacgggcgc
      601 gcaacagggc tacgccgccg ccggcaacca caccttcttc aacggctgcg cgggtagcgt
      661 gcagcgcgtc ttccacgcgg tcttttttct ctttcatttc gacttcggta gccgcgccga
      721 ctttgatcac tgccacgccg cctgccagtt tggcaacgcg ctcttgcagt ttttctttgt
      781 cgtaatcgct ggttgcggtt tcgatttgtt ggcggatttc ggcaacacgc gcttcgattt
      841 gggcagcgtc accgaagccg tcgatgatgg tggtgttttc tttgccgatt tcaatgcgtt
      901 tggcttgacc caaatcttcc aaagtggctt tttccaaaga caagcccact tcttccgaaa
      961 tcacttggcc accggtcaaa atggcgatgt cttgcaacat ggctttgcga cggtcgccaa
     1021 agcccggtgc tttcacggcc acggttttca ggatgccgcg gatgttgttc accaccaaag
     1081 tcgccaaggc ttcgccttcc acgtcttcag cgataatcaa gagcgggcgg ctggctttgg
     1141 ccacttgttc caaaacaggc aacaaatcgc ggatattgct gatttttttg tcgaacaaca
     1201 atacaaacgg attgtccaaa gcagcgattt gtttttcagc gtcgttgatg aagtaaggag
     1261 acaggtagcc gcggtcgaac tgcatacctt caaccacgtc cagctcgttt tccaaagatt
     1321 tgccgtcttc aacggtaatc acgccttctt tgccgacttt ttccatcgct tcggcgataa
     1381 tcgcgccgac ttgttcgtca gagttggcgg aaatcgagcc gacttgggcg atttctttgg
     1441 aagtgtcgca aggtttggcg atgtttttta gctcttcaac caaagcggca acggctttgt
     1501 cgataccgcg tttcaggtcg gtcgggttca taccggcggt aacgtatttc atgccttcgg
     1561 caacgatgga ttgtgccaat acggtggcgg tagtcgtacc gtcgcccgcc acgtcgttgg
     1621 ttttggacgc gacttctttc accatttgcg cgcccatatt ttcaaacttg tctttcagtt
     1681 cgatttcttt ggcgacggtt acgccgtctt tggtgatgtg cgggccgccg aaagcgcggt
     1741 caacgactac gttgcggcct ttggggccca aggttacgcg cacggcgttt gccaaaatgt
     1801 tcacgccgtt taccattttt tggcggactt cattgccgaa ctgtacgtct tttgctgcca
     1861 tttcaattct ccaaaaatca ttaaaactgt ctgataaaac cgtttatgcc gtctgaaggc
     1921 ggtttgccgt ttcagacggc atcgtgtccg tatttatttt tcaacgatgc cgaaaatatc
     1981 ttcttcacgc attaccaaca gctcttcgcc gtcggctttg acggtttggc cgctgtattt
     2041 gccgaaaatg attttgtcgc cgactttgac atccagcgga cggcgcgcgc cgtctttgcc
     2101 gattttgccc gcgcccacgg cgatgacttc gcccatatcg ggtttttcgg cggccgcacc
     2161 cggcaaaacg atgcccgatg cggttttctc ttcagcttcc aagcgtttga cgacaacgcg
     2221 gtcgtgtaaa ggacggatgg tcatatttat gctccgataa aatgatttga aaacaatcat
     2281 ctgcccgaac ggttcggaca gattgaagtg gaaaccgggc tgccgcctgc cggcccgccc
     2341 gtataagtcg gcaaaattag ggtgtgtgcg ggcaaattca agtgaggcgg aaaaaattta
     2401 tttccgccgt tttttatagt ggactaaatt t
//
LOCUS       DAWGNT010000211         2423 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.211, whole genome shotgun sequence.
ACCESSION   DAWGNT010000211 DAWGNT010000000
VERSION     DAWGNT010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2423
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.211"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            128..2341
                     /locus_tag="WHR98_001902"
     CDS             128..2341
                     /locus_tag="WHR98_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEZ2308530.1"
                     /translation="MTAISPIQDTQSATLQELREWFDSYCAALPNNDKKLVLAARSLA
                     EAHYPADAATPYGEPLPDHFLGAAQMVHELDLLPDAVAATLLADIGRYVPDWNLLVSE
                     RCNSTVAELVKGVDEVQKLTHFARVDSLATPEERAQQAETMRKMLLAMVTDIRVVLIK
                     LAMRTRTLQFLSNAPDSPEKRAVAKETLDIFAPLANRLGVWQLKWQLEDLGFRHQEPE
                     KYREIALLLDEKRTERLEYIENFLNILRTELKKYNIHFEVAGRPKHIYSIYKKMVKKK
                     LSFDGLFDIRAVRILIDTVPECYTTLGIVHSLWQPIPGEFDDYIANPKGNGYKSLHTV
                     IVGPEDKGVEVQIRTFDMHQFNEFGVAAHWRYKEGGKGDSAYEQKIAWLRQLLDWREN
                     MAESGKEDLAAAFKTELFNDTIYVLTPHGKVLSLPTGATPIDFAYALHSSIGDRCRGA
                     KVEGQIVPLSTPLENGQRVEIITAKEGHPSVNWLYEGWVKSNKAIGKIRAYIRQQNAD
                     TVREEGRVQLDKQLAKLTPKPNLQELAENLGYKKPEDLYTAVGQGEISNRAIQKACGT
                     LNEPPPVPVSETTIVKQSKIKKGGKNGVLIDGEDGLMTTLAKCCKPAPPDDIVGFVTR
                     DRGISVHRKTCPSFRHLAEQAPEKVLDASWAALQEGQVFAVDIEIRAQDRSGLLRDVS
                     DALARHKLNVTAVQTQSRDLEASMRFTLEVKQVNDLPRVLASLGDVKGVLSVTRL"
BASE COUNT          639 a          777 c          575 g          432 t
ORIGIN      
        1 aggaaaaatc agaaaagttt tgcattttga aaatgagatt gagcataaaa ttttagtaac
       61 ctatgttatt gcaaaggtct caagctgtta caataaactc gtttttatcg gaacggaaga
      121 ccccatcatg accgccatca gcccgattca agacacgcaa agcgcgactc tgcaagaatt
      181 gcgcgaatgg ttcgacagct actgcgccgc gctgccgaac aacgataaaa aacttgtctt
      241 agccgcccgt tcgctggcgg aagcacatta ccccgccgat gccgccacgc cgtatggcga
      301 gccgctgccc gaccacttcc tcggcgcggc gcaaatggtt catgaactcg acctgctccc
      361 cgatgccgtc gccgccaccc tgcttgccga catcggacgc tacgtccccg actggaacct
      421 attggtttcc gaacgctgca acagtaccgt cgccgagctg gtcaaaggtg tggacgaagt
      481 gcagaaactc acccacttcg cccgggtgga cagcctcgcc acaccggaag aacgcgccca
      541 gcaggcagaa actatgcgga aaatgctgct ggcgatggtt accgacatcc gcgtcgtgtt
      601 aatcaaactg gcgatgcgta cgcgcaccct gcaattttta agcaacgccc ccgacagccc
      661 cgaaaaacgc gccgtcgcca aagaaaccct cgacatcttc gccccgctcg ccaaccgttt
      721 gggcgtgtgg cagctcaaat ggcagctcga agatttgggc ttccgccatc aagaacccga
      781 aaaataccgc gaaattgccc tgcttttgga cgaaaaacgc accgaacgcc tcgaatacat
      841 cgaaaacttc ctcaatatcc tgcgtacgga actcaaaaaa tacaatatcc actttgaagt
      901 cgccggccgt ccgaaacaca tctactccat ttacaaaaaa atggtgaaga aaaaactcag
      961 cttcgacggc ctctttgaca tccgcgccgt gcggattctg attgataccg tccccgagtg
     1021 ttacaccacg ctgggcatcg tccacagcct ctggcagccc attcccggcg agttcgacga
     1081 ctacatcgcc aaccccaaag gcaacggcta taaaagtttg cacaccgtca tcgtcggccc
     1141 ggaagacaaa ggcgtggaag tgcaaatccg caccttcgat atgcaccaat tcaacgaatt
     1201 cggtgtcgcc gcccactggc gttacaaaga gggcggcaaa ggcgattccg cctacgaaca
     1261 gaaaatcgcc tggttgcgcc aactcttgga ctggcgcgaa aacatggcgg aaagtggcaa
     1321 ggaagacctc gccgccgcct tcaaaaccga gcttttcaac gacacgattt atgtcctgac
     1381 cccgcacggc aaagtcctct ccctgcccac gggcgcgacc cccatcgact tcgcctacgc
     1441 cctgcacagc agcatcggcg accgttgccg aggtgcgaaa gtcgaagggc aaattgtgcc
     1501 gctgtccacc ccactcgaaa acggacagcg cgtcgaaatc attaccgcca aagaagggca
     1561 tccttccgtc aactggcttt acgaaggctg ggtcaaatcc aacaaggcaa tcggcaaaat
     1621 ccgcgcctac atccgccagc aaaacgccga caccgtgcgc gaagaaggcc gcgtccaact
     1681 cgacaaacag cttgccaaac tcacgcccaa acccaacctg caagagcttg ccgaaaatct
     1741 cggctacaaa aagccagaag acctctacac cgccgtcgga caaggcgaaa tttccaaccg
     1801 cgccatccaa aaagcctgcg gcacgctgaa cgaaccgccg cccgtacccg tcagcgaaac
     1861 caccatcgtc aaacagtcca aaatcaaaaa aggcggcaaa aacggcgtgc tcatcgacgg
     1921 cgaagacggt ctgatgacca cgcttgccaa atgctgcaaa cccgcgccgc ccgacgacat
     1981 tgtcggcttc gttacccgcg atcgcggcat ttcggtacac cgcaaaacct gcccctcttt
     2041 ccgacacctc gccgaacaag cacctgaaaa agtgctggac gcaagctggg cggcgttgca
     2101 ggaaggacaa gtgttcgccg tcgatatcga aatccgcgcc caagaccgct ccgggctttt
     2161 gcgcgacgta tccgacgcac tcgcccgcca caaactcaac gttaccgccg tgcaaaccca
     2221 gtcccgcgac ttggaagcca gcatgaggtt cacgctcgaa gtcaaacaag tcaacgacct
     2281 cccgcgcgtc ctcgccagcc tcggcgacgt caaaggcgta ttgagcgtta cccggcttta
     2341 aatacaaaaa tgccgtctga aagccgtata acgcttcaga cggcattttg attgacgggg
     2401 tttgctattt tttgttgcat aat
//
LOCUS       DAWGNT010000212         2406 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.212, whole genome shotgun sequence.
ACCESSION   DAWGNT010000212 DAWGNT010000000
VERSION     DAWGNT010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2406
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.212"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            262..768
                     /locus_tag="WHR98_001903"
     CDS             262..768
                     /locus_tag="WHR98_001903"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEZ2308531.1"
                     /translation="MSSSVSSKTRYWVLALAAIVLDQWSKWAVLSSFQYRERVNVIPS
                     FFDLTLVYNPGAAFSFLADQGGWQKYFFLVLAVAVSAYLVRAILRDEFATLGKTGAAM
                     IIGGALGNVIDRLIHGHVVDFLLFYWQNWFYPAFNIADSFICVGAVLAVLDNIVHRKD
                     SKKNVNAV"
     gene            787..1755
                     /gene="ispH"
                     /locus_tag="WHR98_001904"
                     /gene_synonym="lytB"
     CDS             787..1755
                     /gene="ispH"
                     /locus_tag="WHR98_001904"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEZ2308532.1"
                     /translation="MNGKTIILANPRGFCAGVDRAISIVERALEEFGAPIYVRHEVVH
                     NKFVVDNLREKGAVFIEDLAEVPPGATLVYSAHGVSKAVRQEAAERGFRVFDATCPLV
                     TKVHKEVARLDAQDCEIIMIGHKGHVEVEGTMGQLAPGKMLLVETVGDVAKLEVRNPD
                     KLAYVSQTTLSVDETKDIIAALNARFPNIRNPHKEDICYATTNRQTAVKELAEQCDIV
                     IVVGSPNSSNSNRLREVAASRGIDAYMVDNAGYLQRAWFEGKNKVGVTAGASAPEVLV
                     REVLATIRGWGHETVREGEGAEESIVFVLPKELRREGETKPDLCKR"
     gene            complement(1842..2405)
                     /locus_tag="WHR98_001905"
     CDS             complement(1842..2405)
                     /locus_tag="WHR98_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEZ2308533.1"
                     /translation="MCWGFGCREGKEFCKGLSLPEIIRTLLEMPSETAVADIARTYSA
                     HYLNPNNRNMTLFPDALPCLDKLKAQGYWLAVATGKGRAGLDNAISQTATGGYWLATA
                     CAGEYPSKPSPEMVFGICGELGFDPKEALVVGDTAHDLHMAANAGAAAVGVATGAHSR
                     EQLLSAPHLAVLDGLSELPGFLARHYA"
BASE COUNT          534 a          599 c          738 g          535 t
ORIGIN      
        1 agattgcggt gttgttggaa cgcaactgaa ccgtcattcc cacgaaagtg ggaatctaga
       61 acgaggggtt tgagcaactg tttttatccg ataagttttt gtgcggacag gtctggattc
      121 ccgcctacgc gggaatgacg ggtttcgaga ttacggtgtt gtcgggaatg acgggtttta
      181 agattacggc atttgccgtt tcgggtacag gaaagggggt tttcgggtaa aatggtactc
      241 ttttaccggc tgttgaaaaa tatgtcttca tctgtttcaa gtaaaacgcg ctattgggta
      301 ttggcacttg ccgccatcgt gctggaccag tggtcgaagt gggcggtgct gtcgtcgttt
      361 cagtatcggg aacgcgtcaa tgtcattcct tcctttttcg atttgacctt ggtgtacaac
      421 ccgggtgcgg cgttcagctt ccttgccgat cagggcggct ggcaaaaata cttttttttg
      481 gtgctggcgg tggcggtgag cgcgtatttg gtacgcgcca tcttgcgcga tgagtttgca
      541 accctcggca aaacgggtgc ggcgatgatt atcggcggtg cgttaggcaa tgtcatcgac
      601 cgcctgatac acggtcatgt cgtcgatttc ttattgtttt attggcaaaa ttggttttat
      661 cccgccttta atattgccga cagctttatc tgcgtcggcg cggtgttggc agtgttggac
      721 aacatcgtcc accgcaaaga tagcaaaaaa aacgtgaatg ccgtctgaac acggaatgca
      781 aaacttatga acggaaaaac cattatcctt gccaatccgc gcggcttctg cgccggcgtg
      841 gatcgggcaa tcagtattgt cgagcgtgct ttggaagaat tcggcgcgcc gatttatgtg
      901 cgccacgaag tcgtccacaa caaattcgtc gtcgataacc tgcgcgaaaa aggcgcggtg
      961 tttatcgaag acttggcgga agtgccgccg ggcgcgacgc tggtttattc ggcacacggc
     1021 gtatcgaagg cggtgcggca agaagcggcg gagcgcggtt tccgcgtgtt tgatgcgact
     1081 tgcccgctgg tgacgaaagt gcataaggaa gtcgcccgac tggatgccca agactgtgaa
     1141 atcatcatga tcgggcataa ggggcacgtc gaggttgaag gaacgatggg gcagcttgcg
     1201 ccgggcaaaa tgcttttggt cgaaacggtc ggagatgtgg caaaactcga agtcagaaac
     1261 cccgacaaac tcgcctatgt cagccaaacc acgctctcgg tcgatgaaac caaagacatc
     1321 attgccgcgc tgaacgcgcg tttccccaat atccgcaatc cgcacaagga agacatctgc
     1381 tatgcgacga ccaaccggca aaccgccgtc aaagagctgg cggaacagtg cgacatcgtg
     1441 attgtggtcg gttcgcccaa ttcgtccaac agcaaccgct tgcgcgaagt ggcggcatcg
     1501 cgcggaatcg atgcgtatat ggtggataat gcaggctacc tgcaacgtgc atggtttgag
     1561 ggcaaaaaca aagtcggcgt aacggcaggc gcgtccgcgc ccgaagtgtt ggtgcgggaa
     1621 gtactggcaa ccatacgcgg atgggggcac gaaaccgtac gcgaaggcga gggtgcggaa
     1681 gaaagcattg tgttcgtcct gcccaaagag ctgcgccgcg agggcgaaac caaacccgat
     1741 ttgtgcaaac gttgagcaag cgttgaatgt ttgggcaaaa caaatgccgt ctgaacaggc
     1801 ttcagacggc atttttgccg cgtgccggat gcggaaacca atcaggcgta atgtcgtgca
     1861 agaaaaccgg gcagttcgga caaaccgtcc aatacggcga gatgcggtgc gctaaggagc
     1921 tgttcgcgcg aatgtgcgcc ggtggccacg ccgactgccg ccgcgcctgc gtttgccgcc
     1981 atatgcaggt catgcgccgt atcgccgacg accaatgcct ctttcgggtc gaaccccagt
     2041 tcgccgcaga ttccgaatac catttcgggc gagggtttgg agggatattc ccccgcgcag
     2101 gcggtggcga gccaatagcc gccggtggcg gtttggctga tggcgttgtc caaacccgcc
     2161 cgccctttgc ccgtggcgac ggcaagccag tatccttgtg ctttgagctt gtccagacag
     2221 ggcagggcat cgggaaagag cgtcatattg cggttgttgg gattgaggta atgcgcggaa
     2281 taagtgcgcg cgatgtcggc aacggcggtt tcagacggca tttcgagcag ggtgcggatg
     2341 atttcgggca ggctgagacc tttgcaaaat tcctttccct cccgacagcc gaaaccccaa
     2401 cacagg
//
LOCUS       DAWGNT010000213         2347 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.213, whole genome shotgun sequence.
ACCESSION   DAWGNT010000213 DAWGNT010000000
VERSION     DAWGNT010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.213"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(83..1492)
                     /gene="dacB"
                     /locus_tag="WHR98_001906"
     CDS             complement(83..1492)
                     /gene="dacB"
                     /locus_tag="WHR98_001906"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine
                     carboxypeptidase/D-alanyl-D-alanine-endopeptidase"
                     /protein_id="HEZ2308534.1"
                     /translation="MNFPKTAASLLLLLASLAAHALDTGRIPQNEIAVYVQELDSGKV
                     IIDHRSDVPVNPASTMKLVTAFAAFKTFGSNYRWATEFKSNGTVNDGTLDGNLYWAGS
                     GDPVFNQENLLAVQRQLREQGIRNITGHLMLDHSLWGEVGSPDDFEADSGSPFMTPPN
                     PTMLSAGMVMVRAERNAADSTDILTDPPLPHIFAQNNLKITASQAACLSVKKLMRASF
                     SDNTLKLRGNIPESCLGKPVGVRMFVLDELIRQSFTNHWLLGGGRISDGIGISDTPEG
                     AQTLAVAHSKPMKEILTDMNKRSDNLIARSVFLKLGGDGKLPAVSEQAASAVRRELAV
                     SGIDVADLVLENGSGLSRKERVTARMMAQMLETAYFSPFAQDFIDTLPIAGTDGTLRN
                     RFKQSGGLLRLKTGTLNNVRALAGYWLGDKPMAVVVIINSGRAVSLLPDLDNFVANNI
                     ISGGDGWLDAKLMCKERRA"
     gene            1657..2223
                     /locus_tag="WHR98_001907"
     CDS             1657..2223
                     /locus_tag="WHR98_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEZ2308535.1"
                     /translation="MAKKISILVGSLRRASFARKVALNAAEMFPEGWQAEIVEIGHLP
                     LYNFDYDDPAVEDVPLPESYTAFRETIKASDGILFVTSENNRTIPACLKNAVDIGSKP
                     NADVAWKNKPAGIISHSVGKMGGYSSQKNLRLALSYFDMPVTGQPEVFLGNSPTLFDE
                     NGKLIDSARDFVQSYINQFVGLIERNAK"
BASE COUNT          544 a          567 c          669 g          567 t
ORIGIN      
        1 attttaaaac aattagtaaa atcgagttta tcctagttat ctaggacagc cccttaaatt
       61 taatccacta tattttcctg tttcaggctc ggcgttcttt gcacatcagt ttcgcatcca
      121 gccagccatc gccgccggag atgatgttgt tggcaacgaa gttgtccaag tcgggcagca
      181 gggaaacggc gcggccgctg ttgatgatga cgaccaccgc catcggtttg tcgcccagcc
      241 aataacctgc aagggcgcgg acattgttga gcgtgccggt ttttaagcgc aacagcccgc
      301 cgctttgttt gaagcggttg cgtaaagtcc cgtctgtgcc ggcgatgggc agcgtatcga
      361 tgaaatcttg tgcaaacggg ctgaaataag ccgtttccaa catttgcgcc atcattctcg
      421 ccgttaccct ttcttttctg gacagacctg aaccgttttc caaaaccaaa tccgcaacat
      481 cgatgcccga cacggcaagt tcacgccgga cggcagacgc tgcctgttcg gaaacggcgg
      541 gcagtttgcc gtcgccgccg agtttgagga agacggaacg cgcaattaga ttgtccgaac
      601 gcttgttcat gtccgtcaaa atttccttca tcggctttga gtgtgcaacg gcaagcgtct
      661 gcgcgccttc cggcgtgtcg gatatgccga tgccgtctga aatccgtccg ccgccgagca
      721 gccaatggtt ggtaaaactt tgccggatca gttcgtcaag tacgaacatc cggacaccga
      781 caggcttgcc caaacagctt tcgggaatat tgccgcgcaa tttcagcgta ttgtccgaaa
      841 aagatgcacg catcagtttt ttgaccgaaa ggcaggcggc ttgggaggcg gtaattttca
      901 agttgttttg ggcgaaaata tgcggcaaag gcggatcggt gaggatgtcg gtactgtcgg
      961 cggcattgcg ttcggcgcgc accataacca taccggcaga cagcatagtt ggattggggg
     1021 gcgtcataaa cggcgaaccg ctgtcggctt cgaaatcgtc ggggctgccg acttcgcccc
     1081 acaggctgtg gtcgagcatc aggtgtcccg tgatattgcg tatgccttgt tcgcgcaact
     1141 ggcgttggac ggcaagcagg ttttcctgat tgaaaacggg gtcgccgctg cccgcccaat
     1201 acaggtttcc gtcaagcgtg ccgtcgttta ccgtaccgtt gcttttaaac tcggtcgccc
     1261 agcggtaatt gctgccgaag gttttgaagg cggcaaacgc ggtaacgagt ttcattgtgg
     1321 aggcggggtt gacggggaca tccgagcggt ggtcaatgat gacttttccg ctgtcaagct
     1381 cttggacata tacggcgatt tcgttttgcg gaatgcggcc ggtatcgagc gcgtgtgcgg
     1441 cgagggaggc gagaagcagc agcagggagg ccgctgtttt ggggaaattc ataggtaaat
     1501 ctgttacata aaaaaagcaa ttataaggca aagccggata agtgggaacg ctgtggcggc
     1561 gggccggctt gtttgcaggg gaaatcacat atataataat cgctatcatt atgaaatgat
     1621 tgagacgcac aaacttaata ttcaggagga atgattatgg ctaagaaaat cagtattttg
     1681 gtgggcagcc tgcgccgtgc ttcttttgcg cgcaaagtgg cattgaatgc ggcggagatg
     1741 ttccccgaag gctggcaggc ggaaatcgtc gaaatcggac atctgccgct ttacaatttc
     1801 gattatgacg accctgcggt ggaagatgtg ccgctgcccg aaagctacac ggctttccgc
     1861 gaaacgatta aggcttcgga cggcattttg ttcgttacgt ccgaaaataa ccgcaccatt
     1921 cccgcctgtt tgaaaaatgc ggtggacatc ggctcgaaac cgaatgccga cgtggcgtgg
     1981 aaaaacaaac cggccggtat catcagccat tccgtcggca agatgggcgg ttacagttcg
     2041 caaaaaaacc tgcgccttgc gctgtcttat ttcgatatgc ccgtaaccgg acagccggaa
     2101 gtgtttttgg gcaattcgcc gacgctgttt gatgaaaacg gcaaattgat cgactcggca
     2161 agggattttg ttcagtcata tattaatcag tttgtcggtt tgattgaaag aaatgccaaa
     2221 taaacaaacc aagtcgaaag gccgcaaaac cggttcgggt tttgcggctt ttttatatgg
     2281 gctgggcagc gtcaaggttt gccgtttgcc ggataatgcg cggcaaatga ccggcgtgtt
     2341 tatagcg
//
LOCUS       DAWGNT010000214         2345 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.214, whole genome shotgun sequence.
ACCESSION   DAWGNT010000214 DAWGNT010000000
VERSION     DAWGNT010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2345
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.214"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            30..2180
                     /gene="yccS"
                     /locus_tag="WHR98_001908"
     CDS             30..2180
                     /gene="yccS"
                     /locus_tag="WHR98_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002240871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HEZ2308536.1"
                     /translation="MKTPLLKPLLITSLPVFASVFTAASIVWQLGEPKLAMPFVLGII
                     AGGLVDLDNRLTGRLKNIITTVALFTLSSLTAQSTLGTGLPFILAMTLMTFGFTILGA
                     VGLKYRTFAFGALAVATYTTLTYTPETYWLTNPFMILCGTVLYSTAILLFQIILPHRP
                     VQENVANAYEALGSYLEAKADFFDPDEAEWIGNRHIDLAMSNTGVITAFNQCRSALFY
                     RLRGKHRHPRTAKMLRYYFAAQDIHERISSAHVDYQEMSEKFKNTDIIFRIHRMLEMQ
                     GQACRNTAQALRASKDYVYSKRLGRAIEGCRQSLRLLSDSNDNPDIRHLRRLLDNLGS
                     VDQQFRQLRHSDSPAENDRMGDTRIAALETGSLKNTWQAIRPQLNLESGVFRHAVRLS
                     LVVAAACTIVEALNLNLGYWILLTALFVCQPNYTATKSRVRQRIAGTVLGVIVGSLVP
                     YFTPSVETKLWIVIVSTTLFFMTRTYKYSFSTFFITIQALTSLSLAGLDVYAAMPVRI
                     IDTIIGASLAWAAVSYLWPDWKYLTLERTAALAVCSNGAYLEKIAERLKSGETADDVE
                     YRATRRRAHEHTAALSSTLSDMSSEPAKFADSLQPGFTLLKTGYALTGYISALGAYRS
                     EMHEECSPDFTAQFHLAAEHTAHIFQHLPETEPDDFQTALNTLRGELDTLRTHSSGTQ
                     SHILLQQLQLIARQLEPYYRAYRQIPHRQPQNAA"
BASE COUNT          557 a          909 c          469 g          410 t
ORIGIN      
        1 tcacttcata acaataaacc ggtaaaacca tgaaaacccc actcctcaag cctctgctca
       61 ttacctcgct tcccgttttc gccagtgttt ttaccgccgc ctccatcgtc tggcagctag
      121 gcgaacccaa gctcgccatg cccttcgtac tcggcatcat cgccggcggc cttgtcgatt
      181 tggacaaccg cctgaccgga cggctgaaaa acatcatcac caccgtcgcc ctgttcaccc
      241 tctcctcgct cacggcacaa agcaccctcg gcacagggct gcccttcatc ctcgccatga
      301 ccctgatgac cttcggcttt accattttag gcgcggtcgg gctgaaatac cgcaccttcg
      361 ccttcggcgc actcgccgtc gccacctaca ccacacttac ctacaccccc gaaacctact
      421 ggctgaccaa ccccttcatg attttatgcg gcaccgtact gtacagcacc gccatcctcc
      481 tgttccaaat catcctgccc caccgccccg ttcaagaaaa cgtcgccaac gcctacgaag
      541 cgctcggcag ctacctcgaa gccaaagccg actttttcga tcccgacgaa gccgaatgga
      601 taggcaaccg ccacatcgac ctcgccatga gcaacacagg cgtcatcacc gccttcaacc
      661 aatgccgttc cgccctgttt taccgccttc gaggcaaaca ccgccacccg cgcaccgcca
      721 aaatgctgcg ttactacttt gccgcccaag acatacacga acgcatcagc tccgcccacg
      781 tcgattatca ggaaatgtcc gaaaaattca aaaacaccga catcatcttc cgcatccacc
      841 gcatgctcga aatgcaggga caagcctgcc gcaacaccgc ccaagccctg cgcgcaagca
      901 aagactacgt ttacagcaaa cgcctcggcc gcgccatcga aggctgccgc cagtcgctgc
      961 gcctcctttc agacagcaac gacaatcccg acatccgcca cctgcgccgc cttctcgaca
     1021 acctcggcag cgtcgaccag cagttccgcc aactccgaca cagcgactcc cccgccgaaa
     1081 acgaccgcat gggcgacacc cgcatcgccg ccctcgaaac cggcagcctc aaaaacacct
     1141 ggcaggcaat ccgtccgcag ctgaacctcg aatcgggcgt attccgccat gccgtccgcc
     1201 tgtccctcgt cgttgccgcc gcctgcacca tcgtcgaagc cctcaacctc aacctcggct
     1261 actggatact actgaccgcc cttttcgtct gccaacccaa ctacaccgcc accaaaagcc
     1321 gcgtccgcca gcgcatcgcc ggcaccgtac tcggcgtaat cgtcggctcg ctcgtcccct
     1381 acttcacccc gtctgtcgaa accaagcttt ggatcgtcat cgtcagtacc accctctttt
     1441 tcatgacccg cacctacaaa tacagtttct ccaccttctt cattaccatt caagccctga
     1501 ccagcctctc cctcgcaggt ttggacgtat acgccgccat gcccgtacgc atcatcgaca
     1561 ccattatcgg cgcatccctt gcctgggcgg cggtcagcta cctgtggccc gactggaaat
     1621 acctcacgct cgaacgcact gccgcccttg ccgtatgcag caacggcgcc tatctcgaaa
     1681 aaatcgccga acgcctcaaa agcggcgaaa cggccgacga cgtcgaatac cgcgccaccc
     1741 gccgccgcgc ccacgaacac accgccgccc tcagcagcac cctttccgac atgagcagcg
     1801 aacccgcaaa attcgccgac agcctgcaac ccggctttac cctgctcaaa accggctacg
     1861 ccctgaccgg ctacatctcc gccctcggcg cataccgcag cgaaatgcac gaagaatgca
     1921 gccccgactt taccgcacag ttccacctcg ccgccgaaca caccgcccac atcttccaac
     1981 acctgcccga aaccgaaccc gacgactttc agacagcact gaatacactg cgcggcgaac
     2041 tcgacaccct ccgcacccac agcagcggaa cacaaagcca catcctcctc caacagctcc
     2101 aactcatcgc tcggcagctc gaaccctact accgcgccta ccgacaaatt ccgcacaggc
     2161 agccccaaaa tgcagcctga aaaagtttcg gcattttgta agagagggca gattgtcaga
     2221 caggttgcaa gatagtggat aaggctttgc gcagggtaaa tgcgtagcaa ctgaaccgtc
     2281 attcccacga acctacatcc cgtcattccc acgaaaacag aaaaccaaaa tcagaaacct
     2341 aaaat
//
LOCUS       DAWGNT010000215         2308 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.215, whole genome shotgun sequence.
ACCESSION   DAWGNT010000215 DAWGNT010000000
VERSION     DAWGNT010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.215"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..567)
                     /locus_tag="WHR98_001909"
     CDS             complement(<1..567)
                     /locus_tag="WHR98_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010931119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEZ2308537.1"
                     /translation="MEHKLPQLPYELDALSPHLSKETLEFHYGKHHQTYITNLNNQIK
                     GTEFENLPLEEIVKKSSGGVFNNAAQTWNHTFYWLGFTPKGQGKPVGELAAAIDAKWG
                     SFEKFQEAFNACAAGTFGSGWAWLVKTPAGGLDLVSTSNAATPLTTENTPLLTCDVWE
                     HAYYIDYRNSRPNYLKGFWEIVNWNEVAK"
     gene            730..2136
                     /gene="dnaB"
                     /locus_tag="WHR98_001910"
     CDS             730..2136
                     /gene="dnaB"
                     /locus_tag="WHR98_001910"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEZ2308538.1"
                     /translation="MNDYTAMPSEDREIGALSLPPHSMEAEQSVLGGLMLENPAWDRI
                     ADVVSGEDFYRHEHRLIFRSIAKLINESRPADVITVQEDLQRNEELEAAGGFEYLITL
                     AQNTPSAANIRRYAEIVRERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQ
                     IAESTAKSKQGFLEMPDLLKEVVQRIDMLYSRDNPDEVTGVPTGFIDLDKKTSGLQPG
                     DLIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGGAQLVMRMLGSVGRLDQS
                     VLKTGRLEDEHWGRLNEAVVKLSDAPVYIDETPGLTALELRARARRLARQFNNKLGLI
                     VIDYLQLMAGSGRSDNRASELGEISRSLKALAKELQVPIIALSQLSRTVESRTDKRPM
                     MSDLRESGAIEQDADLIMFMYRDEYYNQDSPMKGLAECIIGKHRNGPVGKIFLTWTGQ
                     FTKFDNAAYIPEEAKIED"
BASE COUNT          566 a          590 c          618 g          534 t
ORIGIN      
        1 tttggcgact tcgttccagt tgacgatttc ccaaaaacct ttcaggtagt tggggcggct
       61 gttgcggtag tcgatgtagt aggcgtgttc ccacacgtcg caggtcagca gcggcgtgtt
      121 ttcagtggtc agcggcgtag cggcgttgga agtagaaacc aaatccaatc cgccggcagg
      181 ggtttttacc agccacgccc aaccggagcc gaaagtaccg gcagcgcagg cattgaacgc
      241 ttcttggaat ttctcgaagc tgccccattt cgcgtcgatg gcggcggcca gttcgccgac
      301 aggtttgcct tgacctttgg gcgtgaaacc cagccagtag aaggtgtggt tccaagtttg
      361 tgccgcgttg ttgaacacgc cgcccgaaga ttttttcaca atctcttcca aaggcaggtt
      421 ttcaaattcg gtgcctttga tttgattgtt caggttggtg atgtaggttt gatggtgttt
      481 gccgtagtgg aattccaaag tctctttgct cagatgcggg gacaatgcgt ccagttcata
      541 aggcagttgc ggcagcttat gttccatttt gtgctcctaa tattgtttta aatgttgtat
      601 tttggcagtg ttgctgcaaa tagctcagca gcgcacatat tttacctgtt ttgagggatg
      661 gaaaccaatt aaacctgctt tacgctataa tagaagattg caatttcggc acgacagata
      721 ggatgtacca tgaacgatta cacagccatg ccgtctgaag accgtgagat cggcgcattg
      781 tcgctgcctc cacattcgat ggaggcggaa caatccgttt tgggcgggtt gatgctggaa
      841 aatccggcat gggacaggat tgccgatgtg gtttcgggag aggatttcta ccggcatgaa
      901 caccgcctga ttttccgatc cattgccaaa ttaatcaatg agagccgtcc cgccgatgtg
      961 attacggttc aggaagattt gcagcggaac gaagaattgg aagcggcagg cggatttgaa
     1021 tatctgatta cgctggcgca aaataccccg tctgccgcca atatccgccg ctacgccgaa
     1081 atcgtgcgcg agcgttccat tatgcgccaa cttgccgaag tgggaacgga aatcgcccgc
     1141 agcgcctaca atccgcaagg cagggacgcg gggcagcttt tggacgaggc ggaaaacaaa
     1201 gtattccaaa tcgccgaaag cacggccaaa tccaagcagg gctttttgga gatgcccgat
     1261 ttgctgaaag aagtcgtaca gcgcatcgat atgctctact cgcgcgacaa tcccgatgaa
     1321 gttaccggcg tgccgacggg gttcatcgac ctcgacaaaa aaacctcggg tctgcaaccc
     1381 ggcgacctga ttatcgtcgc cggtcgtcct tctatgggta agaccgcctt ttccatcaat
     1441 attgccgaac acgttgccgt agaaggcaag ctgcccgttg ccgtcttttc gatggagatg
     1501 ggcggtgcgc aactggtcat gcgtatgctc ggctcggtcg gacggctgga tcaaagcgtt
     1561 ttgaaaaccg gcaggctcga agacgaacac tggggtcgcc tgaacgaagc agtcgtcaaa
     1621 ctctccgacg cgcccgtgta catcgacgag accccgggtt tgactgcgct cgaactgcgc
     1681 gcccgcgccc gccgtctcgc ccgtcaattt aacaataagc tgggattgat cgtcatcgac
     1741 tacctgcaac tgatggcggg atccggccgt tccgacaacc gagcttcaga gctgggcgaa
     1801 atttcacgtt cgctcaaagc gttggcgaaa gaattgcaag tccccatcat cgccctgtcg
     1861 caactgagcc gcacggtcga atcgcgtacc gacaaacgcc ccatgatgtc cgaccttcgc
     1921 gagtccggcg caatcgagca ggatgccgac ctgattatgt tcatgtaccg cgacgaatac
     1981 tacaaccagg actcacccat gaaaggcctt gccgaatgta tcatcggcaa acaccgcaac
     2041 ggtcccgtcg gtaaaatctt cctcacatgg acgggacaat tcaccaaatt cgacaatgct
     2101 gcctatattc ccgaggaggc aaagatagag gattaaatgg ctatataaaa atttattagg
     2161 cgaaatcagg caaaatcgtt taaaatcatg ctgagagatt gccctaaaaa ataaaacgcg
     2221 gtcttgaggc atttttgcat tcagcccgca tataattgaa aatatagtgg attaacaaaa
     2281 atcaggacaa ggcaacgaag ccgcagac
//
LOCUS       DAWGNT010000216         2301 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.216, whole genome shotgun sequence.
ACCESSION   DAWGNT010000216 DAWGNT010000000
VERSION     DAWGNT010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.216"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            438..513
                     /locus_tag="WHR98_001911"
     tRNA            438..513
                     /locus_tag="WHR98_001911"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:472..474,aa:Glu,seq:ttc)
     gene            898..1063
                     /locus_tag="WHR98_001912"
                     /pseudo
     CDS             898..1063
                     /locus_tag="WHR98_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216748.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
     gene            complement(1113..1919)
                     /gene="thiD"
                     /locus_tag="WHR98_001913"
     CDS             complement(1113..1919)
                     /gene="thiD"
                     /locus_tag="WHR98_001913"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002260117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEZ2308539.1"
                     /translation="MKSSFVQTLTIAGSDSGGGAGIQADLKTFQMRGVFGTCVITAVT
                     AQNTLGVSAVHLVPTETITAQIQAIREDFDIRAYKIGMLGTAEIIECVADKLKHCDFG
                     RRVLDPVMIAKGGAPLLQDSAVAALTRLLLPDTDVLTPNLPEAEALTGVHIENRKDAE
                     RAAKILLDYGVKNVVIKGGHLNGSTSGRCTDWLFTQNETLELDSPRFPTAHTHGTGCT
                     FSACITAELAKGSDVCEAVRTAKSYITAAISNPLEIGAGHGPVNHWAYRD"
BASE COUNT          542 a          587 c          598 g          574 t
ORIGIN      
        1 tatctgaaag tttgaggttc tagattcccg ctttcgcggg aatgacgaaa agtggcggga
       61 atgacgaagt ttcagacggc atcgcccgcc tgttttgata tggcggcacc cccccccccc
      121 gacaaaaaaa acaatccgga acgcatctga ccgttccggc ttgttttcag gcgaatccgc
      181 cgcatcagaa catactgcgc acgcccatat tgacctgcca agtctggcgc atcgtgtgca
      241 tcgaagacct ttgtgcctca aaataaagct gccttccgtt gtcggcatta ccacgcaaaa
      301 aaatgaattg cttgatattc caatgttttt tatatgtttt tatattgtga tgcgatcaga
      361 caaacgcccc cctgacattt gtttagacgg catcgtattg ctaaatttct ataagtatgt
      421 ataatgtccg tttccacgcg cccatcgtct agaggcctag gacactgccc tttcacggcg
      481 gcaaccgggg ttcgaatccc cgtgggcgtg ccaattcaaa aacctgcttg tttcaagcag
      541 gtttttttat tatgaatcgt cattcccgca cccttcgtca ttcccgcgaa agcgggaatc
      601 tggagcgcag gattaaagaa accgttttat ccgataagct tccgtgccga caggtctgga
      661 ttcccgcctg cgcgggaagg acggcagagg gtggacgatg ccgtctaaag cctgacaagg
      721 catttgatgc cgtctgaaac ttcgtcattc ccgcaccctt cgtcattccc gcaaaagcgg
      781 gaatctagag cgtagggttg aagaaaccgt tttatccaat aagtttccgt gccgacaggt
      841 ctggattccc actttcgtgg gaatgacgag tcttttataa cctgagacct ttgcaaaatg
      901 cctttccctt ttaaatttaa agagggggga gctgaaggat tattatcggg attgggagct
      961 ggtcgaatat aaagaagaat tgggcgcgat gcacgccaaa gacgaaaacg gcaatccgat
     1021 acggtttaaa tttgtaacca tgctggcgaa aaagcctgaa taatcctcaa aaatgccgtc
     1081 tgaacatttt gtttcagacg gcatttttac gtctagtccc gatacgccca atgattgacc
     1141 gggccgtgtc ccgcgccgat ttccaaaggg tttgagattg ccgccgtaat gtaggacttg
     1201 gcagtccgta cggcttcgca aacgtccgag ccttttgcca actcggcggt gatgcaggcg
     1261 gaaaacgtgc agcccgtgcc gtgcgtgtgg gcggttggaa agcgcgggct gtccaattcc
     1321 agcgtttcat tttgcgtaaa cagccaatcc gtgcagcgtc cgcttgtgct gccgttcaaa
     1381 tgtccgcctt tgataacgac atttttgaca ccgtaatcaa gcaggatttt tgccgcacgt
     1441 tccgcatctt tacggttttc gatatgcacg ccggtcaggg cttccgcctc gggcaggttg
     1501 ggggtcaata catccgtatc gggaagcagc aggcgcgtca gtgccgcaac ggcggaatcc
     1561 tgcaacagcg gcgcaccgcc tttggcaatc atcacagggt cgagtacgcg cctgccgaag
     1621 tcgcagtgtt tcagcttgtc ggcaacgcat tcgatgattt ccgccgtgcc gagcattcct
     1681 attttgtagg cgcggatgtc aaagtcttcc ctgattgctt ggatttgtgc ggtgatggtt
     1741 tcggtcggga cgagatgaac cgccgacacg cccaaggtat tttgcgcggt aacggcggtg
     1801 atgacgcacg ttccgaacac gccgcgcatc tgaaacgttt tcaaatccgc ctgaatgccc
     1861 gcaccgccgc ccgaatccga accggcgatg gtaagcgttt gcacaaaaga gcttttcatt
     1921 tgttcctcct taatattgtg tccgataaaa agggctaatg cctgtaaaaa agcacggcga
     1981 tgccgtctga aaaccgcagc gcggggtttg tggtgcatta tatgccgtat tgcaggacaa
     2041 ggcacagggc agggcggcgg ggtgcatcgt agcaactgta tttttgcccg acggggtgaa
     2101 aaatacagtt gctacaccca ctgataatga aaaaagagag caatgccgtc tgaaccgcgt
     2161 gttgcggcga gcataaaccg gcacgcttta ttcgtcattc ccacaaaaac agaaacctaa
     2221 aattccgtca ttcctacgaa agcgggaatc cagtgtgttc ggtttcagtt gtttttgggt
     2281 ttcgggtgat ttccaaatcg a
//
LOCUS       DAWGNT010000217         2285 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.217, whole genome shotgun sequence.
ACCESSION   DAWGNT010000217 DAWGNT010000000
VERSION     DAWGNT010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2285
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.217"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            20..748
                     /gene="rpe"
                     /locus_tag="WHR98_001914"
     CDS             20..748
                     /gene="rpe"
                     /locus_tag="WHR98_001914"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEZ2308540.1"
                     /translation="MTTYRIAPSILSADFARLGEEVESVIAAGADLIHFDVMDNHYVP
                     NLTFGPMVCAALKPYASVPIDVHLMVEPVDDLIQSFAKAGASIITFHPEASRHIDRSL
                     SLIRDMGCQAGLVLNPATPVYLLENVLDRLDMVLLMSVNPGFGGQSFIPHTLEKIRRV
                     RAMLDRYEAQSGRHIAIEVDGGIKTDNIAAVARAGADTFVAGSAIFGKPDYKAVIDAM
                     RAELEKSGRLNLAPMIEIEMPSEN"
     gene            complement(771..1802)
                     /gene="ruvB"
                     /locus_tag="WHR98_001915"
     CDS             complement(771..1802)
                     /gene="ruvB"
                     /locus_tag="WHR98_001915"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002217138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEZ2308541.1"
                     /translation="MLQTDNLTAAQPQRIVAAQTASAQEELLERALRPKTLDDYIGQH
                     KAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTLAHIIAKELGVNLRQTSGPVLER
                     AGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDYRLDIMIGEGPAARSVKID
                     LPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIVSRSAQLLQLDMSEEGA
                     EEIAKRSRGTPRIANRLLRRVRDFADVKNNGTIDGGIADAALSMLDVDVQGLDVMDRK
                     FLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFLQRTPRGRMATERAY
                     LHFGLPVEK"
     gene            complement(1884..2192)
                     /locus_tag="WHR98_001916"
     CDS             complement(1884..2192)
                     /locus_tag="WHR98_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308542.1"
                     /translation="MTLKTDLLPKINNEDYQRLILKHSAEFSGGEIRLLNEILEKFNF
                     DVVQAQALAQAVMQQVRFDPNAYHIDSDDEDTTGICPHCINPPMPPLRDYLVWRETRG
                     "
BASE COUNT          463 a          548 c          733 g          541 t
ORIGIN      
        1 gatattgaag gaaaaaaaca tgactactta ccgtatcgca cccagcattt tatcggcaga
       61 ttttgcacgg cttggcgaag aggtggaaag cgtcattgcg gcaggtgcag atctgatcca
      121 ttttgacgtg atggacaacc attatgtgcc gaacctgacc ttcggcccta tggtttgcgc
      181 ggcgttgaag ccttatgcaa gcgtgccgat cgatgtgcat ctgatggtcg aacccgttga
      241 cgacctgatt cagtcgtttg ccaaagcagg agcatcaatc atcacgttcc atcccgaagc
      301 gagccgccat atcgaccgca gcttgagcct gattcgggac atgggctgtc aggcggggct
      361 ggtgttgaat ccggcaacgc ccgtatatct gttggaaaac gtattggaca ggctggatat
      421 ggttttgctg atgtcggtca accccggatt cggcggacaa agcttcatcc cgcacaccct
      481 tgaaaaaatc cgccgggtgc gggcgatgct ggatcggtac gaagcacaaa gcgggcggca
      541 catcgccatc gaagtggacg gcggcatcaa aaccgacaat attgccgccg ttgcccgagc
      601 tggtgcggat acctttgttg ccggttctgc gattttcggc aaaccagact ataaggcggt
      661 gattgatgcg atgagggcgg aactggaaaa aagcggcagg ctgaaccttg cgccaatgat
      721 tgaaatagaa atgccgtctg aaaattagct ctgtttcaga cggcattgcg ttatttttcg
      781 acgggcagcc cgaaatgcag gtaggcgcgt tcggtcgcca tcctgccgcg cggggtgcgt
      841 tgcaggaagc cttgttggat gagatagggt tcgataacgt cttcgatggt gtctgttgat
      901 tcgccgatgg cggcggcaac attgtccaaa ccgaccgggc cgccgccgaa tttgtgcaaa
      961 acggcttcga ggaatttcct gtccatcacg tccagcccct gcacgtccac gtccagcata
     1021 cttaaagcgg catcggcgat gccgccgtcg attgtgccgt tgtttttcac gtcggcgaaa
     1081 tcgcgcacgc ggcgcaacag gcggttggcg atgcgcggcg taccgcggct gcgtttggcg
     1141 atttcttccg cgccttcttc ggacatatcg agttgcagga gttgtgccga acggctgacg
     1201 atggtggcaa ggtcgcggtt ttcgtaaaac tcgaggcggg agacgatgcc gaagcggtcg
     1261 cgcaacggat tggtcagcat accggcgcgg gtggtcgcgc cgacaagcgt gaagggcggc
     1321 aggtcgattt taacggaacg ggcggcgggc ccttcgccta tcataatgtc gagccggtag
     1381 tcttcaagcg cggggtagag gatttcttcg acaacagggc tgaggcggtg gatttcgtcg
     1441 ataaacaata cgtcgtgcgg atcaaggttg gtcaaaaggg cggcgagatc gccggcgcgt
     1501 tcgaggacgg ggccgctggt ttggcgcaaa tttacgccca attctttggc gatgatgtgc
     1561 gccagtgtgg ttttacccag tccgggcggg ccgaagagca aaacgtggtc gagtgcttcg
     1621 ccgcgttttt tggcggcttg gatgaaaatg gcgagctgtt ctttggcttt atgctgcccg
     1681 atatagtcgt ccagcgtttt ggggcggagg gcgcgttcga gcagttcttc ctgtgcggag
     1741 gcggtttggg cggcaacaat gcgttgcggt tgagcggcag tcaggttgtc ggtttgcagc
     1801 atagtgttcc ctttgtcggg tatgccgtct gaacggtcgg cggcgtttca gacggcattg
     1861 aaaagataac ggtcaaaagc gttttacccg cgcgtttcgc gccaaacgag atagtcgcgc
     1921 aggggcggca taggcgggtt gatgcagtgt gggcagatgc ctgtggtgtc ttcgtcgtcg
     1981 ctgtcgatgt gataggcgtt ggggtcgaag cggacttgct gcatcaccgc ctgcgccaac
     2041 gcctgcgcct gaacaacgtc gaaattgaat ttttcgagga tttcgttcaa taggcggatt
     2101 tcgccaccgc taaattccgc actgtgtttg aggatgaggc gttgataatc ttcgttgttg
     2161 attttaggca ataaatcggt tttcagggtc atgattttat gtcgggggcg gaatggctga
     2221 agcgtgaatt atagcggata tggcggcggc tgttgcaaag cttggattgg gtatcgtcct
     2281 caaaa
//
LOCUS       DAWGNT010000218         2205 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.218, whole genome shotgun sequence.
ACCESSION   DAWGNT010000218 DAWGNT010000000
VERSION     DAWGNT010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.218"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            373..885
                     /locus_tag="WHR98_001917"
     CDS             373..885
                     /locus_tag="WHR98_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEZ2308543.1"
                     /translation="MKNFNGKLILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEIAAAA
                     GVPIPTIFEMEGEQGFRSRETAILKKLVILPHIVLSSGGGAVLKEENRALIRKSGTVV
                     YLHAPPEILLERTRCDNSRPLLQVADPLEKLRELYAARDPVYRQTADFTVESANCRET
                     VQTLLKRLSR"
     gene            965..2044
                     /gene="aroB"
                     /locus_tag="WHR98_001918"
     CDS             965..2044
                     /gene="aroB"
                     /locus_tag="WHR98_001918"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEZ2308544.1"
                     /translation="MKTLTVHTPSHSYPIFIGNGLLPQAGSLLKPHLGKRAAIIANET
                     VAPLYLGTLQTALDAAGVSHFSIILPDGEAHKNWQTLNLIFDGLMQNRAERKTTLIAL
                     GGGVIGDMVGFAAATYQRGAPFVQIPTTLLSQVDSSVGGKTAINHPLGKNMIGAFYQP
                     QAVLADLDTLHTLPVRELSAGMAEVIKYGALGDIGFFEWLEQNISGLMTLDREKLAQA
                     VYRCCQMKADIVAQDETEQGIRAWLNLGHTFGHAIETEMGYGTWLHGEAIAAGCVLAA
                     RLSEQLGKTSAADTARLAALLEAAGLPSAPPVFAFEKWLEHMSHDKKVSGGIMRFIGL
                     NRLGEANITEITDTDILRRTLQPYL"
BASE COUNT          535 a          689 c          533 g          448 t
ORIGIN      
        1 ttcagcacct tagagaatcg ttctctttga gccaaggcga ggcaacgctg tactggtttt
       61 tgttaatcca ctatagtatt gataaacata ttatcttcaa tatattcaat tggataattg
      121 tttacctaag caaagataat tgccttttcc tgacaaataa gtgaaatcaa cggattgtca
      181 aaacacagcc tgaaataaaa aacctccctg atttctttta tttgtcctta aaatcagaaa
      241 ggttcgggat ggtcgggtta tttttccaaa cgtaccgccg ccctgccgat ttcgtataaa
      301 attccgccgt aacccgacaa gcccgaaccc tgtcgccccg aaaggcgggg tgtcaaacat
      361 taaggaattg tgatgaaaaa ctttaacggc aaactcatcc tcatcggact gatgggcgcg
      421 ggcaaaacca cgctgggccg gcaaatggcg cagcggctgg attaccgttt ttacgacagc
      481 gatcacgaaa tcgccgcagc cgccggcgtt cccatcccca ccatatttga aatggaaggc
      541 gaacagggat tccgttcgcg cgaaaccgcc atactcaaaa agctggttat cctgccccat
      601 atcgtcctgt cctccggcgg cggcgcggtg ttaaaagaag aaaaccgcgc ccttatccgc
      661 aaaagcggca cggtcgtcta tctgcacgcc ccgcccgaaa tcctgctcga acgcacgcgc
      721 tgcgacaaca gccgccccct tttacaagtt gccgatcctt tggagaaatt gcgcgaactc
      781 tacgccgcac gcgaccccgt ttaccgccaa actgccgact ttaccgtaga atcggcaaac
      841 tgccgggaaa ccgtgcaaac cctgcttaag cgcttatccc gataaaccgg catatgcgcc
      901 ccgcccaaaa aaccaaaccg cgccccgccc ggcgggccgg cggttcaaac tttaaggaac
      961 aacaatgaaa acactgaccg tacacacccc gtcccacagc taccccatct ttatcggcaa
     1021 cgggctgctg ccgcaggcag gcagcctgct caaaccgcat ttgggcaaac gcgccgccat
     1081 catcgccaac gaaaccgtcg ccccgctcta cctcggcacg cttcagacgg cattggatgc
     1141 ggcaggcgta tcccatttca gcatcatcct gcccgacggc gaggcgcaca aaaactggca
     1201 gacgctcaac ctcatctttg acgggctgat gcaaaaccgc gccgaacgca aaaccacatt
     1261 aatcgcactg ggcggcggcg tgatcggcga catggtcggc tttgccgctg ccacctacca
     1321 gcgcggcgca ccgttcgttc aaataccgac cacactgttg agtcaagtcg actcatcggt
     1381 gggcggcaaa accgccatca accacccgct cggcaaaaat atgatcggcg cattctacca
     1441 gccgcaggcg gtgcttgccg acttggacac gctgcacacc ctgcccgtcc gcgaattgtc
     1501 cgccggtatg gcggaagtca tcaaatacgg cgcgctcggc gacatcggtt ttttcgaatg
     1561 gctcgaacaa aacatatccg gactgatgac gctcgatcgg gaaaaactcg cccaagccgt
     1621 gtaccgctgc tgccaaatga aggcagacat cgtcgcccaa gacgaaaccg aacagggcat
     1681 acgcgcatgg ctcaacctcg gacacacctt cggacacgcc attgaaaccg agatgggtta
     1741 cggcacttgg ctgcatggag aagccatcgc cgccggctgc gtgttggcgg cgcgtttgtc
     1801 cgaacaactg ggcaaaacct ccgccgcaga taccgcgcgg ctcgccgccc tgctcgaagc
     1861 cgccggactg ccgtccgcac cgcccgtgtt tgcctttgaa aaatggctcg aacatatgag
     1921 ccacgataaa aaagtcagcg gcggcatcat gcgctttatc ggtctgaacc ggctgggcga
     1981 agccaacatc accgaaatta ccgacacgga catcctccgc cgcaccctgc aaccgtatct
     2041 ctgatttcct ctgccgatgt gctgccgcgc gggtttgacg cacgatgatg attttccatc
     2101 atctttctcc gtaaaagcgg gaatccggtc cgttcggttt cggtcgtttc cgataaattc
     2161 ctgctgcttt tcatttctag attcccactt tcgtgggaat gacgg
//
LOCUS       DAWGNT010000219         2192 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.219, whole genome shotgun sequence.
ACCESSION   DAWGNT010000219 DAWGNT010000000
VERSION     DAWGNT010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.219"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            30..515
                     /locus_tag="WHR98_001919"
     CDS             30..515
                     /locus_tag="WHR98_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308545.1"
                     /translation="MFVNEKDPYAALFAGLVFLTLPFALAVHDALAFVFGRTGLLVSV
                     SDGGFGWRGGWDGVVWFVYGVFAFLNLVVSAGLTKLAYKKMMRRHSRYALFLSGVAAC
                     AAAAVAWIFELLLGNAALGGLRGEAVSEYAFAVWLVAMLTLPKHLTRAPVQPVVFHRK
                     K"
     gene            611..1234
                     /gene="rsmG"
                     /locus_tag="WHR98_001920"
     CDS             611..1234
                     /gene="rsmG"
                     /locus_tag="WHR98_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEZ2308546.1"
                     /translation="MERKERLRAGIAAMGLDISETAQDRLLAYVDLLKKWNKTYNLTA
                     LRDEEKMIVHHLLDSLTLLPHIEGVQTMLDVGSGGGQPGIPAAVCRPDVQITLLDANT
                     KKTAFLQQAVIELGLDNVRVVSGRVEAVSDVRADVVTSRAFAELADFVSWTVHLLKDG
                     GYWAAMKGVYPQGEIDRLPQDVCVEKVQRLDVPGLDAERHIAILRKR"
     gene            1333..2106
                     /locus_tag="WHR98_001921"
     CDS             1333..2106
                     /locus_tag="WHR98_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEZ2308547.1"
                     /translation="MSVNILAIANQKGGVGKTTTTVNLAASLASRGKRVLVVDLDPQG
                     NATTGSGIDKASLQSGVYQVLLGDADVQSAAVRSKEGGYAVLGANRALAGAEIELVQE
                     IAREVRLKNALKAVAEDYDFILIDCPPSLTLLTLNGLVAAGGVIVPMLCEYYALEGIS
                     DLIATVRKIRQAVNPDLDITGIVRTMYDSRSRLVAEVSEQLRSHFGDLLFETAIPRNI
                     RLAEAPSHGMPVMAYDAQAKGTKAYLALADELMARVSGK"
BASE COUNT          432 a          503 c          755 g          502 t
ORIGIN      
        1 tcggtctgct tcggaagagg gggacggcga tgtttgtgaa cgagaaagat ccttatgcgg
       61 ctctgtttgc gggactggtg tttttgacgc tgccgtttgc gttggcggtg catgatgcct
      121 tggcatttgt gttcggacgg acggggctgc tggtgtcggt gtcggacggc ggattcggct
      181 ggcgaggagg ctgggacggc gtggtgtggt ttgtgtatgg cgtgtttgcg tttttgaacc
      241 tggttgtgtc ggcgggtctg acgaaactgg cgtacaaaaa gatgatgcgg cggcattcgc
      301 gttacgcgct gtttctgtcg ggcgtggcgg cttgcgcggc agcagcggtg gcttggattt
      361 tcgagctgtt gttgggcaat gccgccttgg gcgggctgcg cggggaggcg gtgtcggaat
      421 atgcgtttgc cgtgtggctg gtggcgatgc tgacgctgcc caaacacctg acgcgcgcgc
      481 cggtgcagcc ggtggtgttt cacaggaaaa aataggacgg aacgggggat gccgtctgaa
      541 acccgacacg cggtttcaga cggcatgttt ttccgttaac attacgcctg aatatggaca
      601 ggaagcagat atggaacgca aagaacgcct gcgtgcaggc attgccgcga tggggctgga
      661 tatttcggaa acggcgcagg acaggctttt ggcctatgtg gatttgttga aaaagtggaa
      721 caaaacctac aatctgaccg ccctgcgcga cgaggaaaaa atgattgtcc atcatctttt
      781 ggacagcctg acgctgctgc cccatatcga gggtgtgcaa acgatgctgg atgtcggttc
      841 gggcggcggt cagcccggca ttccggcggc ggtgtgccgt ccggatgtgc agataaccct
      901 tttggatgcg aatacgaaga aaacggcttt tttacagcag gcggttatcg agttgggatt
      961 ggacaatgtg cgcgtggtat ccggacgcgt ggaggcggtt tcggacgtgc gtgccgacgt
     1021 ggttaccagc cgtgcgtttg cagaactggc ggattttgtg tcgtggacgg tgcatctgtt
     1081 gaaagacggc ggatactggg cggcgatgaa gggcgtgtat ccgcaggggg aaatcgaccg
     1141 cctgccgcag gatgtgtgcg tcgaaaaagt ccaaaggctt gacgtgccgg gcttggatgc
     1201 ggaacgccat atcgccatac tccgcaagcg ttgagcgcgc ttcagacggc atgaatacct
     1261 tttttgtgcg gataaaggta aaattccgca ctgtttttct tttttcaaca tcagacggga
     1321 cacgggcggg acatgagtgt gaacatcctt gccatcgcca atcagaaggg cggtgtgggc
     1381 aaaacgacga cgacggtaaa tttggcggct tcgctggcat cgcgcggcaa acgcgtgctg
     1441 gtggtcgatt tggatccgca gggcaatgcg acgacgggca gcggcatcga caaggcgagt
     1501 ttgcagtccg gcgtttatca ggtcttattg ggcgatgcgg acgtgcagtc ggcggcggta
     1561 cgcagcaaag agggcggata cgctgtgttg ggcgcgaacc gcgcacttgc cggtgcggaa
     1621 atcgagttgg tacaggaaat cgcccgggaa gtgcgtttga aaaacgcgct caaggcagtg
     1681 gcggaagatt acgactttat cctgatcgac tgcccgcctt cgctgacgct gttgacgctt
     1741 aacggtttgg tggcggcggg cggcgtgatt gtgccgatgt tgtgcgaata ttacgcgctg
     1801 gaagggattt ccgatttgat tgcaaccgtg cgcaaaatcc gtcaggcggt caatcccgat
     1861 ttggacatca cgggcatcgt gcgcacgatg tacgacagcc gcagcaggct ggttgccgaa
     1921 gtcagcgaac agttgcgcag ccatttcggg gatttgcttt ttgaaaccgc catcccgcgc
     1981 aatatccgtc ttgcggaagc cccgagccac ggtatgccgg ttatggctta cgacgcgcag
     2041 gcaaagggta ccaaggcgta tcttgccttg gcggacgagc tgatggcgag ggtgtcgggg
     2101 aaataggtca atccaaatcg ggctgcccgt gcctttatgc tgtttggccg agtgcgttaa
     2161 tatggcggat taaaataaaa atacttatat cg
//
LOCUS       DAWGNT010000220         2177 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.220, whole genome shotgun sequence.
ACCESSION   DAWGNT010000220 DAWGNT010000000
VERSION     DAWGNT010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.220"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            136..2016
                     /locus_tag="WHR98_001922"
     CDS             136..2016
                     /locus_tag="WHR98_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HEZ2308548.1"
                     /translation="MNIFYEESGQFKIASIVQKNDATYQVDTPHGKRTKVKANNVFAE
                     FDGDMAAFLENAQAQAADIDTDLLWEVCGEEEFTAEAIAEEYYGHAPTKTELAATLIA
                     LYAAPVYFYKKAKGVFKAAPEETLKQALAAIERKKQQDAQIDAWAEALKRGEMPSEIA
                     ADLKTILHAPDKQSLTYKAFTKAADALKTSAYELAKKTGGITSIPQYLQDGFEIKYFP
                     KGTGFPDLALPEMPDLPKADVTAFSIDDESTTEVDDALSLTDLDNGTKRVGIHIAAPS
                     LAVKPGDKMEKNIMERLSTVYFPGGKITMLPENWIAAFSLDAGAYRPSISIYFDVDGE
                     FNVGEPTCKIEAVNIAENLRIQAIEPHFNAETGLDEAGEMMFAHHQDLIWFYQFATAL
                     QKARGKYEPDRAPQYDYSIELDEEGKVSVVRRERGSPIDTLVSEMMILANSTWAQMLH
                     DNDLPGLFRVQPAGKVRMSTKSEPHIGMGVQHYGWFTSPLRRAADYINQKQLISLIDD
                     TAEPLYQNSDAELFAALRDFDAAYTAYADFQRQMEAYWSLIYLQQQGTSELTATILKE
                     DLVRIEGLPLVTRANGIPFDALPKSQALFKITELDAEKQFVSLNYIKAVAPAGTTAGN
                     AV"
BASE COUNT          579 a          665 c          516 g          417 t
ORIGIN      
        1 gtactggttt ttgttaatcc actataacgc aagcaccgca aagacgcgcc aaccctctcc
       61 caaccttttt tcagacggca ttttcggtaa tctgctaaaa tcgcccgctt gagtttccac
      121 agaaaaatcc gaaaaatgaa tattttttac gaagagtccg gccaattcaa aatcgcctct
      181 attgtccaaa aaaacgatgc cacctaccaa gtcgataccc cacacggcaa acgcaccaaa
      241 gtgaaggcga acaacgtctt tgccgagttt gacggcgata tggcggcgtt tttggaaaac
      301 gcgcaggcgc aggcggcgga catcgacacc gatttattgt gggaagtgtg cggcgaagag
      361 gaatttaccg ctgaagccat agccgaagaa tattacggcc atgcgccgac caaaaccgaa
      421 ctggcggcga ccttgattgc gctgtacgcc gcgccggtgt atttctacaa aaaagccaaa
      481 ggcgtgttca aagccgcgcc cgaagaaact ttaaaacaag cacttgccgc catcgaacgc
      541 aaaaaacagc aagacgcgca aatcgatgct tgggcggaag ccttgaaacg cggcgagatg
      601 ccgtctgaaa tcgcggcgga tttgaaaacc atcctgcacg cgcccgacaa gcagtcgctg
      661 acctacaaag cctttaccaa agccgccgac gcgctgaaaa cctctgccta cgaattggcg
      721 aaaaaaacgg gcggcattac gtccattccc caatacctgc aagacgggtt tgaaatcaaa
      781 tacttcccta aaggaacagg cttccccgac cttgcccttc ccgaaatgcc cgacctgccc
      841 aaggccgacg ttaccgcctt ttccattgac gacgaatcga ccaccgaagt ggacgacgct
      901 ttaagcctga ccgacttgga caacggcacg aagcgcgtcg gcatccacat cgccgcgccg
      961 tcgcttgccg ttaaaccggg cgacaaaatg gaaaaaaaca tcatggaacg cttaagcacg
     1021 gtttattttc ccggcggcaa aatcactatg ttgcccgaaa actggattgc cgcgttcagc
     1081 cttgatgcag gtgcataccg cccttccatc agcatttatt tcgatgtgga cggcgaattc
     1141 aacgtcggcg aaccgacctg caaaatcgaa gcggtcaaca tcgccgaaaa cctgcgtatc
     1201 caagccatcg agccgcattt caacgccgaa accggcttgg acgaagccgg cgaaatgatg
     1261 ttcgcccacc atcaagacct gatttggttc tatcaattcg ccaccgccct gcaaaaagcg
     1321 cgcggcaaat acgaacccga ccgcgcgccg caatacgatt acagcatcga attggatgag
     1381 gaaggcaagg tatccgtcgt ccgccgcgaa cgcggttcgc ccatcgatac gctggtcagc
     1441 gagatgatga ttcttgccaa cagcacttgg gcgcaaatgc tccatgacaa cgacctgccc
     1501 ggccttttcc gcgtccaacc ggcaggcaaa gtgcgcatga gcactaaatc cgagccgcac
     1561 atcggcatgg gcgtgcagca ttacggctgg ttcacttcgc cgctgcgccg cgccgccgac
     1621 tacatcaacc aaaagcagct gatcagcctg atagacgaca ctgccgagcc gctgtatcaa
     1681 aacagcgatg ccgagctttt cgccgcgctg cgcgactttg atgccgccta taccgcctac
     1741 gccgacttcc aacgccaaat ggaagcctac tggagcctca tctatctgca acagcaaggc
     1801 acgagcgagc tgaccgcgac catcctcaaa gaagacctcg tccgcatcga aggcctgccg
     1861 ctggtaacac gtgccaacgg catcccgttt gacgcgctgc ccaaatcgca ggcattgttc
     1921 aaaatcaccg aattagatgc cgagaagcag tttgtctcgc tcaactacat caaggcagtc
     1981 gcacccgcgg gtacaacggc aggcaatgcc gtctgaagcc cgatacggca aactccggca
     2041 aaaacagaaa cctgaatctc atcattccca cagtcgggaa tccggttttt tgggtttccg
     2101 ttgtttttcc gtttcaatga acttccaagc cgccgttccc gataaatacc cgcaatctaa
     2161 aatcccgtca ttcccac
//
LOCUS       DAWGNT010000221         2175 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.221, whole genome shotgun sequence.
ACCESSION   DAWGNT010000221 DAWGNT010000000
VERSION     DAWGNT010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.221"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            104..1915
                     /gene="typA"
                     /locus_tag="WHR98_001923"
     CDS             104..1915
                     /gene="typA"
                     /locus_tag="WHR98_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEZ2308549.1"
                     /translation="MKQIRNIAIIAHVDHGKTTLVDQLLRQSGTFRANQQVDERVMDS
                     NDLEKERGITILAKNTAIDYEGYHINIVDTPGHADFGGEVERVLGMVDCVVLLVDAQE
                     GPMPQTRFVTKKALALGLKPIVVINKIDKPSARPSWVIDQTFELFDNLGATDEQLDFP
                     IVYASGLSGFAKLEETDESSDMRPLFDTILKHTPAPSGSADEPLQLQISQLDYDNYTG
                     RLGIGRILNGRIKPGQTVAVMNHEQQIAQGRINQLLGFKGLERVPLEEAEAGDIVIIS
                     GIEDIGIGVTITDKDNPKGLPMLSVDEPTLTMDFMVNTSPLAGTEGKFVTSRQIRDRL
                     QKELLTNVALRVEDTADADVFRVSGRGELHLTILLENMRREGYELAVGKPRVVYRDID
                     GQKCEPYENLTVDVPDDNQGAVMEELGRRRGELTNMESDGNGRTRLEYHIPARGLIGF
                     QGEFMTLTRGVGLMSHVFDDYAPVKPDMPGRHNGVLVSQEQGEAVAYALWNLEDRGRM
                     FVSPNDKIYEGMIIGIHSRDNDLVVNPLKGKKLTNIRASGTDEAVRLTTPIKLTLEGA
                     VEFIDDDELVEITPQSIRLRKRYLSELERRRHFKKLD"
     gene            complement(1928..2175)
                     /locus_tag="WHR98_001924"
                     /pseudo
     CDS             complement(1928..2175)
                     /locus_tag="WHR98_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009346148.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          547 a          630 c          571 g          427 t
ORIGIN      
        1 gaaaggcaag ggcttcagac ggcatcttca tttcccaaat actgtccggt aaagcgtggt
       61 ataatgcgca gttatctctt acagtttttg aaaaacatta attatgaaac aaatccgcaa
      121 catcgccatc atcgcccacg tcgaccacgg caaaaccaca ttggtcgacc aactgctgcg
      181 ccaatccggc acattccgcg ccaaccagca ggttgacgag cgcgtgatgg acagcaacga
      241 cctcgaaaaa gaacgcggca tcaccatcct cgccaaaaac accgccatcg attacgaagg
      301 ctaccacatc aatatcgtcg atacgccggg acacgccgac ttcggcggcg aagtagagcg
      361 cgttttgggg atggtggact gcgtcgtctt gttggtggac gcgcaggaag gcccgatgcc
      421 gcaaacccgt ttcgtgacca aaaaagcctt ggctttgggg ctgaaaccga ttgtcgtcat
      481 caataaaatc gacaagccgt ctgcacgtcc gagctgggtt atcgaccaaa ctttcgagct
      541 gttcgacaac ttgggcgcga ccgacgagca gttggatttc ccgattgttt acgcttcagg
      601 tttgagcggc tttgccaagc tggaagaaac cgacgagagc agcgatatgc gcccgctgtt
      661 cgacaccatc ttaaaacaca cgcccgcacc gagcggcagc gcggacgagc cgctgcaact
      721 gcaaatttcc caactcgact acgacaacta caccggccgc ctcggcatcg gtcgtatctt
      781 gaacggacgc atcaaacccg gccaaaccgt tgccgtcatg aaccacgagc agcaaatcgc
      841 ccaaggccgc atcaaccagc ttttgggttt caaaggcttg gaacgcgtac cgcttgaaga
      901 agccgaagcc ggcgacatcg tgattatttc cggtatcgaa gacatcggca tcggcgtaac
      961 catcaccgac aaagacaacc ccaaaggcct gccgatgttg agcgtggacg aaccgacgct
     1021 gacgatggac tttatggtca acaccagccc gctggcgggt acggaaggca aattcgtaac
     1081 cagccgccaa atccgcgacc gcctgcaaaa agaattgctg accaacgtcg ccctgcgcgt
     1141 ggaagacacc gccgatgccg acgtgttccg cgtatccgga cgcggcgagc tgcacctgac
     1201 cattttgttg gaaaatatgc gccgcgaagg ctacgaactc gccgtcggca aaccgcgcgt
     1261 cgtgtaccgc gacatcgacg gtcaaaaatg cgaaccttat gaaaacctga ccgtggacgt
     1321 acccgacgac aaccaaggcg cggtaatgga agaactcggc cgccgccgtg gcgaactgac
     1381 taatatggaa agcgacggca acggacgcac ccgcctcgaa taccatattc cagcgcgcgg
     1441 cttgatcggt ttccaaggcg aatttatgac cctgacgcgc ggggtcgggc tgatgagcca
     1501 cgtgttcgac gattacgcgc ccgtcaaacc cgatatgccc ggccgccaca acggcgtgct
     1561 ggtgtcccaa gagcagggcg aggcagtcgc ttacgccttg tggaatctgg aagaccgcgg
     1621 ccgtatgttc gtatcgccca acgacaaaat ctacgaaggt atgattatcg gcatccacag
     1681 tcgcgacaac gatttggtgg tcaacccgct caaaggcaaa aaacttacca acatccgtgc
     1741 cagcggtacc gacgaagccg ttcgcctgac cacgccgatt aagctgacgc tggaaggtgc
     1801 ggtcgagttt atcgacgatg atgagctggt agaaatcacg ccgcaatcca tccgcctgcg
     1861 caagcgttac ctgagcgaat tggaacgccg ccgccatttc aaaaagctag attgatgttt
     1921 actggattta atgtttaaat gatactcgat gccgtctgaa aaaagttcag acggcatttt
     1981 ttattcggac gggctttgcg gcttcttgaa gctgtttcag acggcgtttt tcctacccaa
     2041 tcaagaaact gccgccattt ttccagcggc atatcgcccc gtcgcgtttc ggtatcgggt
     2101 tcggcttccc ggcagcatgt cgaacaatgc cgtttgaagg aatacgcctt ttgagtcctt
     2161 acaagcttag gaaga
//
LOCUS       DAWGNT010000222         2159 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.222, whole genome shotgun sequence.
ACCESSION   DAWGNT010000222 DAWGNT010000000
VERSION     DAWGNT010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.222"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..815)
                     /gene="cysW"
                     /locus_tag="WHR98_001925"
     CDS             complement(<1..815)
                     /gene="cysW"
                     /locus_tag="WHR98_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002223868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysW"
                     /protein_id="HEZ2308550.1"
                     /translation="MKPYSANPNLTEPRRLRVLLIAAALGFLLLMLVVPLVAVFYEAL
                     KGGWDLYLKSLNDPEAWSAIKLTLITALIVVPVNAVLGVAMAWLLTRFDFRGKQLLTT
                     LLDLPFSVSPVVAGLMFVLLFGAHTALGGRLEAQGIQIIFAIPGIVLATLFVTFPFVA
                     REIIPLMQAQGDSEEQAALILGASGWQMFWRVTLPNIKWALLYGIILTNARAMGEFGA
                     VSVVSGHIRGETNTVPLLVEIFYNEYNFTGAFALSGVLALLALATLAVQNIIT"
     gene            complement(1185..2021)
                     /gene="cysT"
                     /locus_tag="WHR98_001926"
     CDS             complement(1185..2021)
                     /gene="cysT"
                     /locus_tag="WHR98_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HEZ2308551.1"
                     /translation="MLALKTPGVLPGFKLSLGLTVLCLSLLVVLPFAMMAAKAAEIGW
                     GGFWNTIAEPNVLAAVWLSLRMSFYAMLTNVVFGTLVAWVLVRYEFPGKGLANALVDL
                     PFALPTAVTGIALATLYAPNGWIGRFFEPLGIKIAFTPVGIWIALVVVSLPFIVRAVQ
                     PVLEELSGEYEEAAATLGANRFTTFRRVLLPEITPALLTGAGMMFARATGEYGSVIFI
                     AGNIPMVSEILPLIITGKLEQFDVQGASAVALFMLLVSFVILFALNVMQWALGRRSGA
                     KG"
BASE COUNT          565 a          600 c          588 g          406 t
ORIGIN      
        1 ttggtgatga tgttctgcac cgccagcgtc gccagtgcta aaagtgccaa tacgccggag
       61 agggcgaatg cgccggtgaa gttgtattcg ttgtagaaga tttcgaccaa aagcgggacg
      121 gtgttggttt cgccgcgtat gtgtcccgat accacgctga ccgcgccgaa ctcgcccatc
      181 gcgcgggcgt tggtgaggat gatgccgtag agtaatgccc atttgatgtt gggcagggta
      241 acgcgccaaa acatctgcca gccgcttgcg ccgagtatca atgccgcctg ttcttcgctg
      301 tcgccctgtg cctgcatcag cgggatgatt tcgcgtgcga caaaggggaa ggtaacgaac
      361 agcgtcgcca aaacaatacc ggggatggcg aagataatct gtatgccttg cgcttcgagc
      421 cggccgccca atgccgtgtg cgcgccgaac aataagacga acattaaacc ggccaccacg
      481 ggcgatacgg aaaacggcaa atcgagcagg gtagtcagca actgcttgcc gcgaaaatca
      541 aaacgggtca gcagccacgc catcgccacg cccaagacgg cattgacggg gacgacaatc
      601 agcgcggtaa tcagcgtcaa tttgatggca gaccacgctt cgggatcgtt taaggatttt
      661 aggtacaaat cccaaccgcc ttttaaggct tcgtaaaaca cggcgacgag cggcacgacc
      721 agcatcagca gcagaaagcc cagcgcggcg gcaatcagca acacgcgcag ccggcgcggt
      781 tcggtcaggt tgggattggc ggaatagggt ttcatggcgg tggtgttctc tggttggttt
      841 aaaatgtttg gaggtcgtct gaaaagggat tgaggggttt cagacgacct ttttgttcat
      901 taagtagtag gtcggatact tgtatccgac aaggttgctg aatcgcaaat gtttgtcgga
      961 tacaagtatc cgacctacga attctgtgtt ttgtggggcg gattcgtttt cagacgacct
     1021 tttattgatt aagggaataa aaaaacgtct agctgccgtc attcccgcgc aggcgggaat
     1081 ccaccacagg gcaacaggaa aacagaaaat aaataaggca gccgaaattc accaatggat
     1141 tcccgcctgc gcgggaatga cggtaacagg tatttcagac gacctcaacc cttcgcgccc
     1201 gaacgcctgc ccaacgccca ctgcatcacg ttcagcgcaa acagaatcac aaacgaaacc
     1261 agcagcataa acaacgccac cgccgacgcg ccctgtacgt cgaactgttc cagcttgccc
     1321 gtaataatca gcggcaggat ttcagaaacc atcggaatat tgcccgcgat aaaaatcacc
     1381 gagccgtatt cccccgttgc ccgcgcgaac atcattcccg cgccagtcaa gagtgccggc
     1441 gtgatttccg gcagcagcac gcggcggaac gtcgtaaagc ggtttgcgcc caaagtcgcc
     1501 gccgcttcct catattcgcc cgataattcc tccaacaccg gctgcacggc gcggacgata
     1561 aagggcaggc tgacgacgac cagcgcaatc caaatgccga cgggtgtaaa cgcgattttg
     1621 atgcccaaag gctcgaaaaa acggcctatc caaccgttgg gcgcatacag ggtcgccaac
     1681 gcgatacccg taaccgccgt cggcagcgca aacggcaaat caaccagcgc gttcgccaag
     1741 cccttgcccg gaaattcata gcgcaccaat acccacgcca ccagcgtgcc gaacacgaca
     1801 ttggtcagca tcgcataaaa cgacatccgc aagctcagcc agacggccgc caatacgttc
     1861 ggctcggcaa tcgtgttcca aaagccgccc cagccgattt cagccgcctt cgccgccatc
     1921 atcgcaaacg gcaagaccac aagcagcgac aggcacaata cggtcagacc aaggctgagt
     1981 ttgaagccgg gcagtacgcc gggcgttttg agcgctaaca taaaacaatg ctgaaaataa
     2041 ggaaaaggaa ggactacttt aacgatgccg tccgaaaaac ggaaagaatg gaaagtttgg
     2101 tgcaaagacg aatttgttat aaagcggttg gcagtttctc aagcgggcgc gatgtttta
//
LOCUS       DAWGNT010000223         2107 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.223, whole genome shotgun sequence.
ACCESSION   DAWGNT010000223 DAWGNT010000000
VERSION     DAWGNT010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.223"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            234..2012
                     /locus_tag="WHR98_001927"
     CDS             234..2012
                     /locus_tag="WHR98_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA family autotransporter adhesin"
                     /protein_id="HEZ2308552.1"
                     /translation="MNKIYRIIWNSALNAWVAVSELTRNHTKRASATVKTAVLATLLF
                     ATVQANATDEDEEEELESVQRSVVGSIQASMEGSGELETISLSMTNDSKEFVDPYIVV
                     TLKAGDNLKIKQNTNENTNASSFTYSLKKDLTGLINVETEKLSFGANGKKVNIISDTK
                     GLNFAKETAGTNGDTTVHLNGIGSTLTDMLLNTGATTNVTNDNVTDDEKKRAASVKDV
                     LNAGWNIKGVKPGTTASDNVDFVRTYDTVEFLSADTKTTTVNVESKDNGKKTEVKIGA
                     KTSVIKEKDGKLVTGKGKGENGSSTDEGEGLVTAKEVIDAVNKAGWRMKTTTANGQTG
                     QADKFETVTSGTKVTFASGNGTTATVSKDDQGNITVKYDVNVGDALNVNQLQNSGWNL
                     DSKAVAGSSGKVISGNVSPSKGKMDETVNINAGNNIEITRNGKNIDIATSMTPQFSSV
                     SLGAGADAPTLSVDDEGALNVGSKDANKPVRITNVAPGVKEGDVTNVAQLKGVAQNLN
                     NRIDNVDGNARAGIAQAIATAGLVQAYLPGKSMMAIGGGTYRGEAGYAIGYSSISDGG
                     NWIIKGTASGNSRGHFGASASVGYQW"
BASE COUNT          650 a          514 c          528 g          415 t
ORIGIN      
        1 ccgccgtcat tcccgcaaaa gcgggaatcc agacccgtcg gcacggaaac ttaccgaata
       61 aaacagtttc cttagattcc acgtcccaga ttcccgcctt cgcgggaatg acgagatttt
      121 aagttggggg aatttatcag aaaaccccca acccccaaaa accgggcgga tgccgcacca
      181 tccgccccca aaccccgatt taaccattca aacaaaccaa aagaaaaaac aaaatgaaca
      241 aaatataccg catcatttgg aatagtgccc tcaatgcctg ggtcgccgta tccgagctca
      301 cacgcaacca caccaaacgc gcctccgcaa ccgtgaagac cgccgtattg gcgacactgt
      361 tgtttgcaac ggttcaggcg aatgctaccg atgaagatga agaagaagag ttagaatccg
      421 tacaacgctc tgtcgtaggg agcattcaag ccagtatgga aggcagcggc gaattggaaa
      481 cgatatcatt atcaatgact aacgacagca aggaatttgt agacccatac atagtagtta
      541 ccctcaaagc cggcgacaac ctgaaaatca aacaaaacac caatgaaaac accaatgcca
      601 gtagcttcac ctactcgctg aaaaaagacc tcacaggcct gatcaatgtt gaaactgaaa
      661 aattatcgtt tggcgcaaac ggcaagaaag tcaacatcat aagcgacacc aaaggcttga
      721 atttcgcgaa agaaacggct gggacgaacg gcgacaccac ggttcatctg aacggtatcg
      781 gttcgacttt gaccgatatg ctgctgaata ccggagcgac cacaaacgta accaacgaca
      841 acgttaccga tgacgagaaa aaacgtgcgg caagcgttaa agacgtatta aacgcaggct
      901 ggaacattaa aggcgttaaa cccggtacaa cagcttccga taacgttgat ttcgtccgca
      961 cttacgacac agtcgagttc ttgagcgcag atacgaaaac aacgactgtt aatgtggaaa
     1021 gcaaagacaa cggcaagaaa accgaagtta aaatcggtgc gaagacttct gttattaaag
     1081 aaaaagacgg taagttggtt actggtaaag gcaaaggcga gaatggttct tctacagacg
     1141 aaggcgaagg cttagtgact gcaaaagaag tgattgatgc agtaaacaag gctggttgga
     1201 gaatgaaaac aacaaccgct aatggtcaaa caggtcaagc tgacaagttt gaaaccgtta
     1261 catcaggcac aaaagtaacc tttgctagtg gtaatggtac aactgcgact gtaagtaaag
     1321 atgatcaagg caacatcact gttaagtatg atgtaaatgt cggcgatgcc ctaaacgtca
     1381 atcagctgca aaacagcggt tggaatttgg attccaaagc ggttgcaggt tcttcgggca
     1441 aagtcatcag cggcaatgtt tcgccgagca agggaaagat ggatgaaacc gtcaacatta
     1501 atgccggcaa caacatcgag attacccgca acggcaaaaa tatcgacatc gccacttcga
     1561 tgaccccgca attttccagc gtttcgctcg gcgcgggggc ggatgcgccc actttaagcg
     1621 tggatgacga gggcgcgttg aatgtcggca gcaaggatgc caacaaaccc gtccgcatta
     1681 ccaatgtcgc cccgggcgtt aaagaggggg atgttacaaa cgtcgcacaa cttaaaggtg
     1741 tggcgcaaaa cttgaacaac cgcatcgaca atgtggacgg caacgcgcgt gcgggcatcg
     1801 cccaagcgat tgcaaccgca ggtctggttc aggcgtatct gcccggcaag agtatgatgg
     1861 cgatcggcgg cggcacttat cgcggcgaag ccggttatgc catcggctac tcaagcattt
     1921 ccgacggcgg aaattggatt atcaaaggca cggcttccgg caattcgcgc ggccatttcg
     1981 gtgcttccgc atctgtcggt tatcagtggt aagggctttt cgcctgtctg ctgtttggga
     2041 taggcggaag gtttgaaggg aagggtggcg atttgccgcc tgagaccttt gcaaaattcc
     2101 ccaaaat
//
LOCUS       DAWGNT010000224         2095 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.224, whole genome shotgun sequence.
ACCESSION   DAWGNT010000224 DAWGNT010000000
VERSION     DAWGNT010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.224"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..290
                     /gene="mafA"
                     /locus_tag="WHR98_001928"
     CDS             <1..290
                     /gene="mafA"
                     /locus_tag="WHR98_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adhesin MafA"
                     /protein_id="HEZ2308553.1"
                     /translation="AQTKLEYFAVDRDSRKLLIAPKTAAYESQYQEQYALWTGPYKVS
                     KTVKASDRLMVDFSDITPYGDTTAQNRPDFKQNNGKNPDVGNEVIRRRKGG"
     gene            294..1712
                     /gene="mafB"
                     /locus_tag="WHR98_001929"
     CDS             294..1712
                     /gene="mafB"
                     /locus_tag="WHR98_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002233664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymorphic toxin MafB class 1"
                     /protein_id="HEZ2308554.1"
                     /translation="MKPLRRLTNLLAACAVAVAAFGQPALAADLAQDPFITDNAQRQH
                     YEPGGKYHLFGDPRGSVSDRTGKINVIQDYTHQMGNLLIQQANINGTIGYHTRFSGHG
                     HEEHAPFDNHAADSASKEQGNVDEGFTVYRLNWEGHEHHPADAYDGPKGGNYPKPTGA
                     RDEYTYHVNGTARSIKLNPTDTRSIRQRISDNYNNLGSNFSDRADEANRKMFEHNAKL
                     DRWGNSMEFINGVAAGALNPFISAGEALGIGDILYGTRYAIDKAAMRNIAPLPAEGKF
                     AVIGGLGSVAGFEKNTREAVDRWIQENPNAAETVEAVFNVAAAAKVAKLAKAAKPGKA
                     AVSGDFSDSYKHNTASRLSQSVDGEMFQTRNVDFKAKSIGTKIHDGAQGKHISGHRNY
                     IEGKSTLNQNINPQELLNGIHSGAYPVISKGARGNPVVDFGYPIGSDGKSGLSTNFGT
                     IHSGKNGVHIVPANPKTIKKVQ"
     gene            1715..2032
                     /locus_tag="WHR98_001930"
     CDS             1715..2032
                     /locus_tag="WHR98_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308555.1"
                     /translation="MNILPSWLRVGMNIAMLGMIHSDIRLITVDYEEGRRFLKIKNYL
                     SREAITEDHEDMEYLITELWSMCGEYFDEADFECIYSNHSSMELNQINGAVFRRKELI
                     SQA"
BASE COUNT          634 a          575 c          476 g          410 t
ORIGIN      
        1 aagcccaaac caagctcgaa tatttcgccg tcgaccgcga cagccggaaa ctgctgattg
       61 cccctaaaac cgccgcctac gaatcccaat accaagaaca atacgccctt tggaccggcc
      121 cttacaaagt cagcaaaacc gtcaaagcct cagaccgcct gatggtcgat ttctccgaca
      181 tcacccccta cggtgacaca accgcccaaa accgtcccga cttcaaacaa aacaacggta
      241 aaaaccccga tgtcggcaac gaagtcatcc gccgccgcaa aggaggataa accgtgaaac
      301 cgctgcgcag actgacaaac ctccttgccg cctgcgccgt agcggtcgcc gccttcggac
      361 agcccgccct cgcggcggac ttggcgcaag acccgttcat taccgataac gcccaacggc
      421 agcactacga acccggcggc aaataccacc tcttcggcga cccgcgcggc agcgtttccg
      481 accgcaccgg caaaatcaac gtcatccaag actataccca ccagatgggc aacctgctca
      541 tccaacaggc aaacatcaac ggcacaatcg gctaccacac ccgcttttcc ggacacggac
      601 acgaagaaca cgcccccttc gacaaccacg ccgccgacag cgcaagcaaa gaacaaggca
      661 acgttgacga aggctttacc gtgtaccggc tcaactggga aggacacgag caccatcccg
      721 ccgatgccta cgacggcccg aagggcggca attaccccaa acctacgggc gcacgcgacg
      781 aatacaccta tcacgtcaac ggcacagcac gcagcatcaa actcaatccg accgacaccc
      841 gcagcatccg gcaacgcata tccgacaact acaacaacct cggcagcaat ttctccgacc
      901 gcgccgatga agccaacaga aaaatgttcg agcacaatgc caagctcgac cgctggggca
      961 acagcatgga gtttatcaac ggcgtcgccg ccggcgcgct caaccccttt atcagcgcgg
     1021 gcgaagcctt gggcataggc gacatactgt acggaacgcg ctatgccata gacaaagccg
     1081 caatgcgcaa catcgccccc ttgcccgccg agggcaaatt cgccgtcatc ggcggcttgg
     1141 gcagcgtggc gggctttgaa aaaaatacgc gcgaagccgt tgaccggtgg atacaggaaa
     1201 accccaatgc cgccgaaacc gtcgaagccg tcttcaacgt tgccgcagca gccaaagtcg
     1261 cgaagctggc aaaggcggca aaaccgggga aggctgcggt tagtggggat ttctcagact
     1321 cctacaagca taacactgct tcaagattat ctcagtctgt agatggagaa atgtttcaaa
     1381 cccgcaatgt tgattttaaa gcaaaatcta ttgggactaa aattcatgat ggagctcaag
     1441 ggaaacatat ttcaggacat agaaactaca ttgaaggtaa gagtacttta aatcaaaaca
     1501 ttaatcctca agaattgttg aacggaatac attcaggtgc ttatccagtt atttctaaag
     1561 gagcaagagg aaatcctgtt gttgattttg ggtatcctat aggcagcgat gggaaatcag
     1621 gattaagtac caattttggt acgattcatt caggtaaaaa tggagttcac attgttccgg
     1681 ctaaccctaa aaccattaaa aaggtgcaat agttatgaat atattaccaa gctggctgcg
     1741 agtcggtatg aatatagcaa tgctgggcat gatacactca gatatcaggt taattaccgt
     1801 agattacgag gaaggaagaa ggtttttaaa aatcaaaaat tatttatcaa gagaagccat
     1861 cacagaagac catgaagata tggaatattt gattacagag ttatggtcta tgtgtggaga
     1921 atattttgat gaagctgact ttgaatgtat ttattctaat cattcttcta tggagttaaa
     1981 ccaaataaat ggtgcagtat tcaggagaaa ggaattaatt tcgcaagcgt aggttaaaaa
     2041 accaacaatc acaatgtctt ctgaaaccgt gtttaatttt cagacggcat ttcct
//
LOCUS       DAWGNT010000225         2085 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.225, whole genome shotgun sequence.
ACCESSION   DAWGNT010000225 DAWGNT010000000
VERSION     DAWGNT010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.225"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(74..1057)
                     /locus_tag="WHR98_001931"
     CDS             complement(74..1057)
                     /locus_tag="WHR98_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003695246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308556.1"
                     /translation="MMLFFPKDFNRLKIIAYTSPDGDEWVTALEAKLKHREGMIYYSR
                     HRPGTRKKMVLTRRKATNFFRYYSEAESGGASAPESLTHLLCKQVLNELSNLPGGLTT
                     VLNYTEHTEKQPPVTIRLNRALSEYRIEIDGKTFYIDVLLEFDQPGNSSLLRHEIRWQ
                     RKLAVEIWHTSRLASNAPKCLALSKIGIPVVQIRADKSSFLYIDEDELLNYDNEEIKI
                     RINRHVEKLRNTFRKQILCTLLRNPLSADFQTALMLHNQIKADEQQVEQIQEKFEALR
                     NKHVLLEAEYSALVAQYAALLEHQNFQAHSEKREIPKKHGILQRMASWFKS"
     gene            1316..2014
                     /locus_tag="WHR98_001932"
     CDS             1316..2014
                     /locus_tag="WHR98_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002256866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEZ2308557.1"
                     /translation="MSSLKIARIYLRVSTLQQNLERQRKIIDEAKENGFYIAGIYEEK
                     ASGVNASRPELNRLIDDLQEGDWVIAERIDRITRLPPREAELLIQRITEKGAKLHVPD
                     VFSFGNLDELMGEGDSLPKYLTEPLMEALQKMFLRMALSIAHEDWKTRRERANQGIAR
                     AKREGRMKGRPANEELHKSIIQLTLNGVSITGIASALKCSPSTVSKVRRVYNRKHKSG
                     DKDQFDIFKPSLKK"
BASE COUNT          641 a          406 c          430 g          608 t
ORIGIN      
        1 tccgaacatt atttttttca ttgcaatatt ctcctcatct tattgaaact tagggtttgc
       61 tctaaacagt ggtttatgat ttaaaccaac tggccatgcg ctgcagaatc ccatgctttt
      121 tcggaatttc ccttttctcg gagtgagctt ggaaattctg atgttctaat aaggctgcgt
      181 attgagcgac caaagccgaa tattcagctt ccaataaaac atgtttattc ctcagtgcct
      241 caaatttttc ctgtatttgc tctacttgtt gttcatcggc ctttatttga ttatgtaaca
      301 tcaaggccgt ctgaaaatcc gcactcaaag gattacggag tagggtgcag agaatttgtt
      361 tccgaaaggt gttccgaagt ttctctacat ggcgatttat gcggattttg atttcttcat
      421 tatcataatt gagcagctcg tcttcatcaa tatacaaaaa tgaactctta tctgcccgta
      481 tctgaaccac cgggatacct attttcgata aggctaaaca tttaggcgca ttggaagcca
      541 atcgtgatgt atgccaaatc tcaaccgcca attttctctg ccaccttatc tcatgcctga
      601 gtagggaaga gttacccggc tgatcaaatt caagcaaaac atcaatataa aaagttttgc
      661 catctatctc tatccgatat tcggataatg cacggttcag cctaatagtg acaggcggtt
      721 gtttctcggt gtgttcagtg taatttagaa cagtcgtcag tccgccgggt aagttggata
      781 gttcgttcaa cacttgtttg caaagcaagt gggttagcga ttcaggggca gaagcaccac
      841 cggattcagc ttcactgtaa tagcgaaaaa aattggtcgc cttcctcctg gtcaaaacca
      901 ttttctttct tgtaccggga cgatgacggc tgtagtagat cattccttct cggtgtttta
      961 gctttgcttc cagtgcagtt acccattcat caccatctgg actcgtataa gcaataattt
     1021 tcaaacgatt aaaatccttt gggaagaaaa gcatcatcag aataagacaa caataaaatt
     1081 ctatatatcc tgtttgccgc taaagggcaa ttttttcttc ccccttttag atttgtccgg
     1141 ctcatataca gacatgagca acattataga taacagcaat tattattaga atgttgtaac
     1201 attcagccta atactgtatt ttgaccatag gttatttaca gtacccatta tactactgta
     1261 aaatataaat acaataattt aaaatccagt ggattaatta caggatttaa aatacatgag
     1321 tagcctcaaa atagcacgga tttatcttag agtaagtacg ctacaacaaa atttagagcg
     1381 ccaacgcaaa attatagatg aggctaagga aaatggattt tacatagctg gaatctatga
     1441 ggaaaaggcg agtggggtga atgctagtcg tcctgagtta aatcgactca ttgacgatct
     1501 tcaggagggt gattgggtta tcgccgaacg aattgatcga atcactcgcc ttccacctcg
     1561 tgaagcggaa ttactgattc aaagaatcac cgaaaaagga gccaagctgc atgtgcccga
     1621 cgttttttct ttcggtaact tagatgaact tatgggggag ggtgattctc ttccaaaata
     1681 tttaaccgaa ccacttatgg aagccttgca aaaaatgttc ttgcgtatgg ctttaagtat
     1741 tgcccatgag gattggaaga ctagaagaga gcgcgcaaac caaggtattg cacgagccaa
     1801 aagagaagga cggatgaaag gccggcctgc aaatgaggaa ttgcacaaaa gtattatcca
     1861 gctcacacta aacggtgtaa gcattacagg gatagcatct gcacttaaat gtagtccatc
     1921 gacggtaagt aaggttagac gggtttataa ccgcaaacat aagtcagggg acaaggatca
     1981 gttcgatata tttaaaccga gtttgaagaa gtaagtaaac gaaaatacat gcggaatcgg
     2041 ctaggaagaa aaggtaaatt ttgaatatga cagaaaggaa ataaa
//
LOCUS       DAWGNT010000226         1943 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.226, whole genome shotgun sequence.
ACCESSION   DAWGNT010000226 DAWGNT010000000
VERSION     DAWGNT010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.226"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            52..1221
                     /gene="metZ"
                     /locus_tag="WHR98_001933"
     CDS             52..1221
                     /gene="metZ"
                     /locus_tag="WHR98_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-succinylhomoserine sulfhydrylase"
                     /protein_id="HEZ2308558.1"
                     /translation="MSKKLHPQTLAIRGGKEQTEYREHNQALFLTSSFMWDNAQHAAD
                     LFSKKIKGFTYTRTANPTTAAFEKRIAALEGAERAVATSTGMSAIQAAFFTFLQAGDH
                     VVSSRSLFGTTVGFINNIVTKFGIEVSHVSPTDINEWKAAVKANTKLLFLETPSNPLG
                     EVADLEALAELAHGIGALLVVDNSLLSPVGSQPLKHGADISVSSATKAIDGHGRVMGG
                     VLAGSEELMAQVAGYCNSCGLAMSPFNAWQLLSGVETLSLRMEKQFDNALKIAQWLQA
                     QPQVQAVYYTGLPDHPQAELIRKQQNGGGIVIGFEVADQEAAWKVVDGVELFSRTANL
                     GDVRSTITHPWTTTHGRMQPEEKLAANIRPGLVRLSVGLEYVGDLIDDLKQALAR"
     gene            1317..1523
                     /locus_tag="WHR98_001934"
     CDS             1317..1523
                     /locus_tag="WHR98_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2788 domain-containing protein"
                     /protein_id="HEZ2308559.1"
                     /translation="MDEAVFADWALKICLTGLIIFLGFIVWNLGKESKAGKFGIAILF
                     LVLGLGVFGFVFKELLIKFLVLPK"
     gene            complement(1621..1733)
                     /locus_tag="WHR98_001935"
                     /pseudo
     CDS             complement(1621..1733)
                     /locus_tag="WHR98_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582428.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
BASE COUNT          476 a          517 c          498 g          452 t
ORIGIN      
        1 aacaacgggc gcacgctccg ttgccgaacg gataaaaccg aggaatcacc gatgagcaaa
       61 aaactccatc cgcaaacgct cgccatacgc ggcggcaaag aacaaaccga ataccgcgaa
      121 cacaatcagg cattgttcct gaccagcagc ttcatgtggg acaacgccca acacgctgcc
      181 gatttgtttt caaaaaaaat caaaggcttc acttataccc gtaccgccaa cccgaccaca
      241 gccgcctttg aaaaacgcat cgccgctttg gaaggtgcgg aacgcgcggt cgccacttcg
      301 acaggtatgt ccgcgattca ggcggcgttt tttaccttcc tgcaggcggg cgaccacgtg
      361 gtttccagcc gcagcctgtt cggcacgacc gtcggcttta tcaataacat cgttaccaaa
      421 ttcggcatcg aagtgagcca cgtttcgccg actgatataa acgaatggaa agccgccgtc
      481 aaagccaaca ccaaactgct gtttttggaa acgccgtcca accccttggg tgaagtggcc
      541 gacttggaag ccttggcgga attggcgcac ggcatcggcg cgctcttggt ggtggacaac
      601 agcctgctgt cgcccgtcgg ctcgcagcct ttgaaacacg gcgcggatat ttccgtttcc
      661 tccgcgacca aagccataga cggacacgga cgcgtgatgg gcggcgtgtt ggcgggttcg
      721 gaagaactga tggcgcaggt cgccggttac tgcaactctt gcgggctggc aatgtcgccg
      781 tttaacgcat ggcagttgtt gagcggcgta gaaaccctgt cgctgcgtat ggaaaaacag
      841 tttgacaacg ccctgaaaat cgcgcaatgg ctgcaagcgc agccgcaggt tcaagccgtg
      901 tactacaccg gattgcccga ccatccgcag gcagagctta tccgcaaaca gcaaaacggc
      961 ggcggcatcg tcatcggctt tgaagtcgcc gaccaagaag ccgcgtggaa agtcgtggac
     1021 ggcgtggaac tcttttcccg taccgccaac ctcggcgacg tgcgctcgac catcacccat
     1081 ccgtggacaa ccacgcacgg caggatgcag cccgaagaaa aactcgccgc caacatccgc
     1141 cccggattgg tgcgcctgtc ggtcggtttg gaatatgttg gcgatttgat tgacgatttg
     1201 aaacaggcac tcgcgcgctg attgcgtgtt tcagacggca tcggcggaaa aacaccgcaa
     1261 atgccgtctg aaacccttat cttatatggc atacacgtca acaataggaa aaaaatatgg
     1321 atgaagcggt ttttgccgat tgggcgttga aaatctgcct gaccggcttg attatttttt
     1381 tgggttttat cgtttggaat ttgggcaagg agtccaaagc aggcaaattc ggcatcgcca
     1441 ttttgttttt ggttttgggc ttgggcgtgt tcggttttgt atttaaagaa ctgctaatca
     1501 agtttttggt attgcccaaa taggctgccg cctgtcaaaa tgctgtctga aatcataaaa
     1561 agtaatctgc accctaaaag tttgatttaa ccgccaactg attaaggtgc ggatttttat
     1621 gacaaaatat agtggattaa caaaaaccag tacggcgttg cctcgccttg ccgtactatt
     1681 tgtactgtct gcggcttcgt cgccttgtct tgatttaaat ttaatccact ataaaaatca
     1741 tctttccgca gtcattccca cggatgcgaa agcctgtctt tttgaatccc ggataatttt
     1801 acatcgtcat tcccgcgcag gtgggaatcc agatcattgg gtagcggcaa tgttcaaaag
     1861 tcgtctgaaa aatcagaagt tctagattcc cgtttttacg ggaatgacgg aatttcagac
     1921 ggcatccgcc cgccccgtca ttc
//
LOCUS       DAWGNT010000227         1942 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.227, whole genome shotgun sequence.
ACCESSION   DAWGNT010000227 DAWGNT010000000
VERSION     DAWGNT010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.227"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            242..1699
                     /locus_tag="WHR98_001936"
     CDS             242..1699
                     /locus_tag="WHR98_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012779527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEZ2308560.1"
                     /translation="MSRHPAPTGEKTFFGHPFQLSTLFHIELWERFSFYGTQGILLIY
                     LYYTADKGGLGIDKTLAGGIVGAYSGSVYLSTILGAWFADRVWGAEKTLFLSGIVVML
                     GHIVLAAAPGLYGLLIGLIFIALGSGGVKSTASSMVGALYEQDEMRPLRDAGFSIFYI
                     AINIGGFLGPLLTGLLQENIGFHYGFGAAAVGMAFGLWRYSLGRKNLPHPIVPHPLSK
                     GQGKTAAAVGIALIAALATAIKTGLVNLDNFSGILLSTVILAVIAYFARLLTNPRVSS
                     DNKRHIIAYIPLFLTICMFWAVWFQIYTVATVYFDETVNRTIGSFTVPVAWKDSMQSL
                     WVILFSGLMAAMWTKMGRKQPKTPLKFAMAVFVTGASFLGFVPFISSGTPMPIAVFAL
                     IVLAITIGELMISPIALSISTKIAPPLFKTQMVALNFLAFSLGFTLGGVLFEKGYQAG
                     DEIGFYRLLFYIGAATGFLLLLLVPKLNKMLEGTD"
BASE COUNT          434 a          576 c          445 g          487 t
ORIGIN      
        1 gccctatcgg ataagccctt aacagaaaag gctttacccg cgccgtatcg gaacacatcc
       61 tctaaaatac aatccgttga attgaaaaaa atataaaaac atccgcccgc gaaaaacggc
      121 agcgcgtcgt ttgacaaaga atgaaaatat cggttaaaaa ccgattttca tacaaaaacc
      181 accgctgccg tccgcatccg tttcagacgg tattgagaga aaatctttta ggagaacctt
      241 tatgtcccgg catcccgccc ccaccggaga aaaaacattc ttcggccacc ccttccagct
      301 ttccaccctc ttccatatcg aattgtggga acgtttttca ttttacggaa cgcagggcat
      361 cctgctgatt tacctctact acaccgccga caaaggcggc ttgggcatag acaaaaccct
      421 cgccggcggc attgtcggcg catacagcgg cagcgtgtac ctgtccacca ttttgggggc
      481 gtggtttgcc gaccgagtat ggggtgcgga aaaaaccctc ttcctctcgg gcatcgtcgt
      541 gatgctcgga cacatcgtcc ttgccgccgc cccgggcctg tacggccttt taatcgggct
      601 gatattcatc gcattgggca gcggcggcgt gaaatctacg gccagttcta tggtgggcgc
      661 attatacgaa caggacgaaa tgcgcccgct gcgcgatgcg ggattttcca ttttctacat
      721 cgccatcaat atcggcggct tcctaggccc gctgctgacc ggcctgctgc aggaaaacat
      781 cggtttccat tatggtttcg gcgcggcggc ggtcggtatg gcattcggct tgtggcgtta
      841 ttccttggga cgtaaaaacc ttccccatcc catcgtcccc catccgcttt caaaaggaca
      901 gggcaaaact gcggccgccg tcggcattgc tctcatcgcc gcacttgcaa ccgccatcaa
      961 aaccgggctt gtcaacctcg acaatttctc cggcatcctc ttatctaccg tcatccttgc
     1021 cgtcattgcc tattttgccc gcctgctgac taatccccgc gtcagttccg acaacaaacg
     1081 gcacatcatc gcctacatcc cgcttttcct gaccatctgt atgttttggg cggtctggtt
     1141 tcagatttac accgtggcaa ccgtctattt cgacgaaacc gtcaaccgca ccatcggttc
     1201 gtttaccgta cccgtcgctt ggaaagattc tatgcaaagc ctgtgggtca tcctgttttc
     1261 cggactgatg gcggcaatgt ggacaaaaat ggggcgcaaa cagcccaaaa ccccgctgaa
     1321 attcgctatg gcggtatttg ttaccggcgc gtcgtttttg ggattcgtcc cctttatttc
     1381 ctccggtacg ccgatgccta ttgcggtttt cgcactgatt gtccttgcca tcacgatagg
     1441 cgaactgatg atttccccga ttgcgctgtc catctccacc aaaatcgcac cgcctttatt
     1501 caaaacccaa atggtcgccc ttaatttcct tgccttttca ttaggcttca ctttgggcgg
     1561 cgtattgttt gaaaaaggct atcaggcggg cgacgaaatc ggcttctatc ggctgctgtt
     1621 ctacatcggc gcagccacag gcttcctgct gctcctgctc gtccccaaat tgaacaaaat
     1681 gctcgaaggc acagactaag tcccgccccg atgccgtctg aacccttcag acggcatttt
     1741 tccgcataat gaaaccaaac cgtttccacc cgacaggaca ggctcccccc aaccggaagg
     1801 cagcctgccg attgtcattt aaatatctga ctgattccgt ctgtttgcaa gggaaatagc
     1861 cgtttatttc cgcttgggcg gaaaccggtt ctattgagta aaaggcattt tatccgacta
     1921 aattagtgct gcatcaacgg aa
//
LOCUS       DAWGNT010000228         1929 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.228, whole genome shotgun sequence.
ACCESSION   DAWGNT010000228 DAWGNT010000000
VERSION     DAWGNT010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.228"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..>1929)
                     /locus_tag="WHR98_001937"
     CDS             complement(<1..>1929)
                     /locus_tag="WHR98_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019742654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEZ2308561.1"
                     /translation="ISPEIFGTLFQSVMDAQERREAGAHYTETANIDKVINGLFLENL
                     RAEFEAVKALKRDKDKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAE
                     ALKDKTGGLFDSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEV
                     ACHTLPLEDAAEIIHANSLRTPWQAADYIFGDPPFIGSTYQTKEQKNDLESICGHIKG
                     YGLLDYVCNWYVKAAGIMAQHPQVQTAFVSTNSICQGQQVEILWGSLLKQDIEIHFAH
                     RTFQWTSQAAGKAAVHCIIVGFRQKPQMPSEKTLYDYPDIKGEPVKHAAANINPYLID
                     APDVIIAKRSRPVHCEPDMVNGSKPTEGGNLILSTDEKEALIAAEPLAEQYIRPFVGA
                     EEFINGKTRWCLWFHGVSDVKRNHDLKQMPQVQARIQAVKTMREASSDKQTQKDAATP
                     WLFQKIRQPSDGNFLIIPRVSSESRRFVPIGYLSYETVVSDLVFTLPNASLYHFGILS
                     STMHNAFMRTVAGRLESRYRYSNTVVYNNFPFPESCRMPSENDRQDPLRSAVETAAQA
                     VLDARGQYRREAREAGLPEPTLAELYAPDAGYTALDKAHAALDKAVDKAYGYKTGKNT
                     DDEAERTAFLFELYRKAAA"
BASE COUNT          342 a          421 c          657 g          509 t
ORIGIN      
        1 tgccgccgcc ttgcggtaca gctcgaacag gaaggcggtg cgttcggctt cgtcgtcggt
       61 gtttttgcct gttttgtagc cgtaggcttt atcgactgcc ttgtcgaggg cggcgtgggc
      121 tttgtctagg gcggtatagc ctgcgtcggg cgcatagagt tcggcgaggg tcggctcggg
      181 caaaccggct tcccgcgctt ctcggcggta ttgtccgcgc gcgtcgagga cggcttgggc
      241 ggcggtttcg acggcggagc ggagcgggtc ttggcggtcg ttttcagacg gcatccggca
      301 gctttcgggg aaggggaagt tgttgtacac aacggtattg gaatagcggt aacgactttc
      361 cagacggccg gcaacggtac gcataaaggc gttgtgcatg gtggagctga ggatgccgaa
      421 gtggtagagg ctggcgtttg gaagggtaaa taccaaatcg ctgacaactg tttcatatga
      481 tagataaccg atggggacga aacggcggct ttcggatgag acgcgtggga taatcagaaa
      541 attgccgtct gaaggctggc ggattttttg aaaaagccac ggggttgctg catctttttg
      601 agtttgtttg tcgctgctgg cttcgcgcat ggttttgact gcctgaatac gggcttgaac
      661 ttggggcatc tgtttcaggt cgtggttgcg tttaacgtcg gatacgccgt gaaaccacag
      721 gcaccaacgg gttttgccgt tgataaattc ctctgcgccg acaaagggac ggatgtattg
      781 ttccgccaag ggttcggcgg caatcagggc ttctttttca tcggttgaaa ggataaggtt
      841 gccgccttcg gtcggtttgc ttccgttgac catgtcaggt tcgcaatgta cgggacggct
      901 gcgcttggca ataatcacat cgggcgcgtc aatcagatac ggattgatgt tggccgcggc
      961 gtgttttacg ggttcgcctt tgatgtcggg atagtcgtag agggtttttt cagacggcat
     1021 ttgcggcttt tggcggaagc cgacgatgat gcagtggacg gcggctttgc ctgcggcttg
     1081 gctcgtccat tgaaaggtgc ggtgggcaaa gtggatttcg atgtcttgct tcaaaaggct
     1141 gccccaaagg atttcgacct gctggccttg gcagatggaa ttggtggaaa caaatgccgt
     1201 ctgaacttgg ggatgctgcg ccatgatacc ggcggctttg acataccagt tgcagacgta
     1261 atccaacagg ccgtagcctt tgatatggcc gcagatgctt tcgaggtcgt ttttctgctc
     1321 tttggtttgg taggtcgagc cgataaaggg cggatcgccg aagatgtagt ccgccgcctg
     1381 ccaaggtgtg cggaggctgt tggcgtggat gatttcggcg gcgtcttcga gcggcagcgt
     1441 atggcaggcg acttcgccgt cgaagcggat ttgcgtgcgg atgttgcatt ggtggttttt
     1501 gagccacatg gcggtgcggg cgatgaggac ggcaaattcg tctatttcga tgccgtgaaa
     1561 ctgtttcaga cggcattgga cggacgggct gtcgaataag ccgcctgttt tgtctttgag
     1621 cgcttcggcg atgatgtcgt cttcgagggc gcggatacgg tcgtaggcga cgataaggaa
     1681 gttgccgcag ccgcaggccg ggtcgaggaa ttgcaggttt tggatttttt ggtagaaggc
     1741 ggcgagtttt ttgtctttgt cgcgtttgag ggctttgacg gcttcaaatt cggcgcgcag
     1801 gttttctaaa aaaaggccgt tgatgacttt gtcgatgttg gcggtttcgg tgtagtgtgc
     1861 gcccgcttcg cgccgctctt gtgcgtccat gactgattgg aagagcgtgc cgaagatttc
     1921 gggactgat
//
LOCUS       DAWGNT010000229         1846 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.229, whole genome shotgun sequence.
ACCESSION   DAWGNT010000229 DAWGNT010000000
VERSION     DAWGNT010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.229"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            326..1771
                     /gene="zwf"
                     /locus_tag="WHR98_001938"
     CDS             326..1771
                     /gene="zwf"
                     /locus_tag="WHR98_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002220804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEZ2308562.1"
                     /translation="MSTQTNFDLVLFGATGDLAMRKLLPCLYQAHVAGLLHPEGRILG
                     VSRSELDTAGFLAKAETNSKIHIKQNFSDEAWASFVKRIEYLKVDVTEAADFAALGDL
                     VKARKETDNVVIYLSTAPKFFAQACENLAAIGLNADNVRVVLEKPLGTDLASSQQINT
                     DVARYFKEGQIYRIDHYLGKESLQNLLALRFANVMFEPLWNNKYIESVQLTIAEQLGV
                     EERGEFYDITGALRDMVQNHLMQMLCMTAMEAPASLDADAVRDEKVKVIKSLKPLTVE
                     SVNENVVRGQYTAARGMNGYLEEINVPQDSFTETYVAIKAEIENERWKGVPFYLRTGK
                     RMAGKVAEIVLNFKDLNSHIFEGSRTAPNRLVIELQPYESVRLYTQMKTPGAGNKVET
                     VPLATDLGKALEGRRAEAYERLLLDVINGKLALFNRRDELEAAWEYVMPILENWTNNT
                     TPPHGYGAHSWGPEAARELLARDGHKWHEEQ"
BASE COUNT          511 a          420 c          485 g          430 t
ORIGIN      
        1 aaaaggtata ccgtctgaaa gtgggaagcg ggtgttatta tagtacaaaa tttgtaattt
       61 tgttacaaaa aaaatcagac atcgaaaaga aatttgattt aaatcgcaga atctttcgat
      121 tgctgtaacg gaatagggga aacctgcccg atttttggac taggtcaaat aaattgtaaa
      181 aatgggaata gacaaaaagt gtagcggtgt gtagtattac tactcattat gccgcctgcc
      241 tttgtttccg atattgtgat gcagcgtgat ggggaaaaca ggtttcaaac ggcatcgaaa
      301 aattctttcc tgacgagata atgcgatgag tacacaaaca aattttgatt tggtgttgtt
      361 cggtgcgacc ggcgatttgg caatgcgcaa acttttgccc tgcctgtatc aggcgcacgt
      421 ggccggtttg cttcatcccg aaggtcgtat tttgggtgtg agccgcagcg aattggatac
      481 cgccggtttt ttggcaaaag cggaaacgaa ttctaaaatc catatcaaac aaaatttttc
      541 agatgaagcg tgggcttcgt tcgtcaaacg catcgaatac ctgaaggttg atgttaccga
      601 agcagccgat tttgccgctt tgggcgattt ggtcaaagcg cgcaaagaaa ccgacaacgt
      661 cgtcatctat ctgtccaccg cgcccaaatt cttcgcgcaa gcctgtgaaa accttgctgc
      721 gatcggtttg aatgccgaca atgtgcgcgt agttttggaa aaaccgttgg gtacggattt
      781 ggcttcttcc cagcaaatca ataccgatgt tgcgcgttat ttcaaagaag ggcaaattta
      841 ccgcatcgac cactaccttg gcaaagaaag cctgcaaaat ctgcttgcgc tgcgttttgc
      901 caatgtaatg ttcgagccgc tgtggaacaa taaatatatc gaaagcgtgc agttgaccat
      961 cgccgaacag ctcggtgtgg aagagcgcgg tgagttttac gacattaccg gcgcgttgcg
     1021 cgatatggtg caaaaccatt tgatgcagat gttgtgcatg actgcgatgg aagcccccgc
     1081 cagcttggat gccgacgcgg tgcgcgatga aaaagtcaaa gtcatcaagt cattgaagcc
     1141 gctgaccgtc gagtctgtca atgaaaacgt cgtgcgcgga caatataccg ccgccagagg
     1201 catgaacggc tatcttgaag aaatcaacgt tccgcaagac agctttaccg aaacctacgt
     1261 cgccattaaa gccgaaatcg aaaacgaacg ctggaagggc gttcccttct acctgcgtac
     1321 cggcaaacgc atggcgggca aagtggcgga aatcgttttg aacttcaaag atttgaacag
     1381 ccatattttt gaaggcagcc gcaccgcgcc caaccggctc gttatcgagt tgcaaccata
     1441 tgaatccgtg cgcctctata cgcagatgaa aaccccgggg gcaggaaata aggtcgaaac
     1501 cgtgccgctg gcaaccgatt tgggcaaagc attggaaggc cgccgcgcgg aagcttacga
     1561 gcgcctgctg ctggatgtga ttaacggcaa actcgctttg tttaaccgcc gcgacgaact
     1621 tgaagccgcg tgggaatatg tgatgccgat tttggaaaac tggacaaata acaccacgcc
     1681 gccgcacggc tacggcgcac actcgtgggg gcctgaagcc gcgcgcgaac tattggcgcg
     1741 cgacggacac aagtggcacg aagagcagta atacaataat gcgttcagac ggcatggggt
     1801 ttgaaatgcc gtctgaacgt aagtaaagca gtatagtgga ttaaca
//
LOCUS       DAWGNT010000230         1794 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.230, whole genome shotgun sequence.
ACCESSION   DAWGNT010000230 DAWGNT010000000
VERSION     DAWGNT010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.230"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            420..1724
                     /locus_tag="WHR98_001939"
     CDS             420..1724
                     /locus_tag="WHR98_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEZ2308563.1"
                     /translation="MKKHIWAASLLPASLSAEPLNWWKPYSAVNSGDTAWVMTAAALV
                     LLMTLPGLALFYGGMVRKKNLLSTMMHSFSIATLVGILWVAVGYSLAFTPGNAFIGGL
                     GRVFLSGMQIDATAQMLTVSPNAPTVPEPVFMFFQMTFAIISTAIITGAFAERMKYSA
                     MMLFSGIWFLLVYVPGAHWVWGGGFMSKGGVLDYAGGTVVHINAGIAGLVAALVLGRR
                     IGYGREAMPPHNMAMTLIGAAMLWFGWFGFNAGSALAADAAAGMAMAVTQVSAVFGAA
                     GWLACEKIAGHKPSALGLASGAVSGLVGITPAAGFTGPSGAAAIGILTAAACFVSVTV
                     VKHKLRYDDSLDAFGIHGFGGLVGGILTGIFFDNRIFGGDAAVWQQLWIQVKDGFVMA
                     AYSGLMSWAILKVVGKICGGLRVGKDVEREGLDLNIHGERVE"
BASE COUNT          362 a          450 c          522 g          460 t
ORIGIN      
        1 gtgaaacggt tccgtactat ttgtactgtc tgcggcttcg tcgccttttc ctgatttttg
       61 ttaatccact atatttccaa ttaaaaattt ttaatatatt aatcaataaa ttaattttat
      121 aaaataaaaa tattgtcaac aatattttgc cttatcgccc aaacctctgt atattttcct
      181 acagtaaatt gttgacaatc catacgccca catatgcgcc gcctaaggat aaatcctccc
      241 gccggacaac gggtgcaagg gatcggatgc gatatttcca tattcaaaca agggattggc
      301 ggcacatcgg caaaatcccc gcgccgcccc ggtccggcag ggcttgcgtc cctcccggac
      361 aagccccgac cccgcctttc cgaaagacgg gctcaaccat taaggaaact ttaatcaaaa
      421 tgaaaaaaca catatgggcg gcatctttgc tgccggcatc cctatcggca gaacctttaa
      481 actggtggaa gccttattcc gccgtcaatt cgggcgatac cgcctgggtg atgactgcgg
      541 ctgccttggt actgttgatg acgcttcccg ggctggcttt attctacggc ggtatggtgc
      601 ggaaaaaaaa cctgctctcg acgatgatgc acagcttttc catcgcgaca ttggtgggca
      661 tcctttgggt cgccgtcggc tattctttag cgttcacgcc gggaaatgcc tttatcggcg
      721 gtttggggcg cgtattttta agcgggatgc agatagacgc taccgcacag atgctgaccg
      781 tgtcgcccaa tgcgccgact gttcccgaac cggtatttat gttttttcag atgacgtttg
      841 ccattatttc gaccgccatt attaccggcg cgtttgccga acggatgaaa tattcggcaa
      901 tgatgctgtt ttcgggcata tggtttttat tggtttatgt gccgggcgcg cattgggtgt
      961 ggggcggcgg ctttatgagc aagggcggcg tattggatta tgccggcggt acggtggtgc
     1021 acatcaatgc cggtatcgcg ggactcgtcg ccgccttggt tttgggcagg cgcataggct
     1081 acgggcgcga ggcgatgcct ccgcacaata tggcgatgac actgatcggc gcggcaatgt
     1141 tgtggttcgg ctggttcggc tttaacgccg gatcggcgct tgcggcagac gcggcggcgg
     1201 gtatggcgat ggcggtaacg caggtgtcgg ccgtattcgg cgcggcaggc tggcttgcct
     1261 gcgaaaaaat agcgggacac aaaccttccg ctttggggct ggcttccggc gcggtttccg
     1321 gtctggtcgg catcacccct gccgccggct ttaccggccc gtcgggcgcg gccgccatcg
     1381 gtatattgac tgccgccgcg tgctttgtgt ccgtcaccgt cgtcaaacac aaattgcgtt
     1441 acgatgattc tttggacgct ttcggcatac acggattcgg cgggctggtg ggcggaatat
     1501 tgaccggcat ctttttcgac aaccgcattt tcggcgggga tgcggcagtt tggcagcagt
     1561 tgtggataca ggtaaaagac gggttcgtta tggcggcata cagcgggctg atgagttggg
     1621 cgattttgaa ggtcgtgggg aaaatctgcg gcggcctgcg cgtcggcaag gatgtcgaac
     1681 gcgaaggttt ggatctgaat atccacggcg aacgcgtgga ataagggcgg ctatgccgtc
     1741 tgaagcctga aaatcgggtt tcagacggca tttttcacgt ttgccgccga tgga
//
LOCUS       DAWGNT010000231         1776 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.231, whole genome shotgun sequence.
ACCESSION   DAWGNT010000231 DAWGNT010000000
VERSION     DAWGNT010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.231"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(26..349)
                     /locus_tag="WHR98_001940"
     CDS             complement(26..349)
                     /locus_tag="WHR98_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEZ2308564.1"
                     /translation="MDMVVRGGIYLVSLDPTVGSEIKKTRPCVVVSPPEIHNYLKTVL
                     IVPMTSGSRPAPFRVNVRFQDKDGLLLPEQIRAVDKAGLVKHLGNLDNSTAEKLFAVL
                     QEMFA"
     gene            complement(337..576)
                     /locus_tag="WHR98_001941"
     CDS             complement(337..576)
                     /locus_tag="WHR98_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002227726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="growth regulator"
                     /protein_id="HEZ2308565.1"
                     /translation="MILNIRKMGNSQGVILPKSLLGQIGAVDSLAVTVEKGNIILSCP
                     TVRRGWAEAAAMLVETEQEHFFSEIENEADKEWIW"
     gene            complement(699..1496)
                     /gene="truA"
                     /locus_tag="WHR98_001942"
     CDS             complement(699..1496)
                     /gene="truA"
                     /locus_tag="WHR98_001942"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003703378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEZ2308566.1"
                     /translation="MDTAQKQRWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQI
                     AGEAVSTIVAGRTDTGVHATAQVVHFDTTAARPQQAWIRGVNAHLPEGIAVLHARQVA
                     PEFHARFDAYGRHYRYLLESAPVRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFS
                     SFRAAECQAKSPVKTIYRADLTQSAGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLS
                     VEGFAALIQERSRLKAPPTFMPDGLYLTGVDYPEAYGIIRPQIPEWL"
BASE COUNT          400 a          415 c          507 g          454 t
ORIGIN      
        1 aacacaatcc attcagacta ttcaatcagg caaacatctc ctgcaatact gcaaacagtt
       61 tttcagccgt actgttgtct aaatttccaa gatgtttgac caatccggct ttatccacag
      121 ccctaatttg ttcgggtaaa agcaaaccgt ctttatcctg aaagcggaca ttgacgcgga
      181 acggggcagg acggcttccg ctcgtcatag gaacgatcag cacagtcttg agatagttgt
      241 gtatttcagg aggagagact acgacacaag gacgtgtctt tttgatttcg cttcctacgg
      301 tcgggtctaa ggagaccaga tagattccgc cgcgtactac catatccatt ctttatccgc
      361 ttcgttttca atttcggaaa aaaaatgctc ctgctcggtt tcgacaagca ttgcggcagc
      421 ttctgcccat cccctgcgaa cggtaggaca gcttaaaatg atattgccct tttcaactgt
      481 aacagccaag ctgtctactg cccctatttg acccaataat gatttgggca gaatcacgcc
      541 ttgcgagttt cccattttgc gtatgttgag aatcatatac gtaccatatt caccagttta
      601 tgtaataaca atgttagtac cttgatgagg tagtgtcaac attgaaaaag attgcctgac
      661 agtttgtccg atttcaaaat ctccgcgaca agaatgtttt aaagccattc ggggatttgg
      721 gggcggatga tgccgtatgc ctcgggatag tcgacgccgg tcaggtaaag cccgtcgggc
      781 ataaaggtcg gtggggcttt gaggcgactg cgttcttgaa tcagtgcggc gaagccttcg
      841 acgctgagtc tgccgctgcc gacatagacg agcgcgccca tgatgttgcg taccatgtgg
      901 tgcaaaaagg cgttgccgtg caaatcgagg cggacgagtc ctgcgctttg ggtaaggtcg
      961 gcgcggtaga tggttttgac gggggatttt gcttggcatt cggcggcgcg gaagctggag
     1021 aagtcttgtt cgccgatcaa ataggcggca gcccgacgca tcggttcgat gtcgagtttg
     1081 aggtgtgtcc agcctgccct gtttttgagc aggggggaac ggacgggggc ggattcgagc
     1141 aggtagcggt agtgccgtcc gtatgcgtca aatcgtgcat gaaattcggg ggcgacctgt
     1201 cgggcgtgca aaacggcaat gccttcgggc aggtgggcat ttacgccgcg tatccatgcc
     1261 tgttggggac gggcggcagt tgtgtcgaag tggacgactt gggcggtggc atgcacgccg
     1321 gtgtcggtcc tgccggcaac aatggtggaa accgcttccc ctgctatttg ggcaagtgcg
     1381 ttttccaatg ccgcctgaac ggtcggtacg ccgtcagcct gtttctgcca gccgtaaaag
     1441 cggctgccgt cataggatag ggttattgcc cagcgttgtt tttgtgcggt atccatcgga
     1501 tttgggattc ggataaatgt tcagactgca ttgtatcgca gattttgcag ggaaacggca
     1561 aacgcccagg gcgagcggcg ttgtttgggg agttgggggg tggatgcagt tgctacgaat
     1621 cgctatcctg tgaattcacc ctgtcaggag tgcccgaatc gtcattctcg cgcaggcggg
     1681 aatctaggac gtaaaatcta aagaaaccat tttatagtgg attaacaaaa accagtatgg
     1741 cgttgcctcg ctttagctca aagagaacga ttctct
//
LOCUS       DAWGNT010000232         1768 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.232, whole genome shotgun sequence.
ACCESSION   DAWGNT010000232 DAWGNT010000000
VERSION     DAWGNT010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.232"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(148..804)
                     /locus_tag="WHR98_001943"
     CDS             complement(148..804)
                     /locus_tag="WHR98_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002213545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HEZ2308567.1"
                     /translation="MKNKTKVWDLPTRLFHWLLAASLPFMWYSAKAGGDMLQWHTRVG
                     LFVLFLLVFRLCWGIWGSDTARFSRFVQGWAGIRGYLKNGIPEHIQPGHNPLGALMVV
                     ALLVAVSFQVGTGLFAADENTFSTNGYLNHLVSEHTGSLMRKIHLNFFKLLAVFSAIH
                     IAAVAAYRVFKKKNLVLPMITGFKYIEGKTSIRFAGKTALAAALSVAALAAAAILLLS
                     "
     gene            868..1758
                     /locus_tag="WHR98_001944"
     CDS             868..1758
                     /locus_tag="WHR98_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002229481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEZ2308568.1"
                     /translation="MFPVFHLSGESRRRMLQTALRFPHVFKARAEDSHKGTFGTLAVV
                     GGSAGMSGAPVLAASAAMYLGCGKVWVGFNQDTLPFAVIAGFPEIMLDTADSLAKRQD
                     INAWVVGCGLGTGRAAVGTLAGILTEHTDKPVLLDADALNILSTDAETRNLARGCKNL
                     ILTPHPAEAARLLGTTVAQVQADRTAAVRKIGAIFGATVVLKGHKTLVAASDTEIYVN
                     ESGNAGLATAGSGDVLGGIIGSLLAQGVPVFEAACAGAWLHGAAADVIKESAGIAAGL
                     LAGEIAPAARWLRNRITESM"
BASE COUNT          393 a          416 c          581 g          378 t
ORIGIN      
        1 ccttgtcctg atttttgtta atccactata aaacggtttg ggacggaaaa acggtctgaa
       61 gccgtttcgg gcattcagac cgtttgcgcg aagaggggat gccgtccgaa gggcgaaaag
      121 ggcttcagac ggcattgatg tcgggtttca ggacaggagc aggatggcgg ctgcggcaag
      181 cgcggcaacc gataatgcgg cggcaagcgc ggttttgccg gcaaagcgga ttgaggtttt
      241 gccttcgatg tatttgaagc cggttatcat cgggaggacg aggtttttct ttttgaacac
      301 gcggtatgcg gcgacggcgg cgatatgaat ggcggaaaaa acggcgagca gcttgaaaaa
      361 gttgaggtgg attttccgca taaggctgcc cgtatgttcg gaaaccaaat ggttgagata
      421 gccgttggtg ctgaaggtgt tttcatcggc ggcaaaaagc cccgtgccga cttgaaatga
      481 gacggcgacc aaaagcgcga cgaccatcag tgcgcccaag gggttgtgtc cgggctggat
      541 atgttcggga ataccgtttt tcagatagcc gcgtatgcct gcccagcctt ggacgaaacg
      601 ggaaaaacgg gcggtatcgc tgccccaaat gccccagcag aggcgaaata cgagcaggaa
      661 aaggacgaac agcccgacgc gcgtgtgcca ttgcagcata tcgccgccgg ctttcgcgct
      721 ataccacata aagggcaggg acgcggcaag cagccagtgg aaaaggcggg tggggaggtc
      781 ccaaactttg gttttgtttt tcataatcgg tttccggcgg tagaatcggt ttgttttcga
      841 gccttatttt aaccgattgg aggggcaatg tttcccgttt ttcatctttc aggcgagagc
      901 cgccgccgga tgcttcagac ggcattgcgt tttccccatg ttttcaaagc ccgtgcggaa
      961 gattcgcaca aagggacttt cggcacgctc gccgtagtcg gtggatcggc agggatgagc
     1021 ggcgcgcccg tattggcggc atcggcggca atgtatctcg gctgcggcaa agtgtgggtg
     1081 ggtttcaatc aggatacgct accttttgcc gttattgccg gttttcccga gattatgctg
     1141 gatacggcgg acagtttggc caaacgtcaa gatataaacg cctgggttgt cggttgtgga
     1201 ttgggtacag gtagggcggc ggtcggaacg cttgccggaa ttttgacgga acacacggac
     1261 aagcccgtcc ttttggatgc ggacgcgctg aacatattat caaccgatgc cgaaacccga
     1321 aatctggcac gcgggtgtaa aaatctgatt ttaacgccac accccgccga agccgcgcgc
     1381 ctgcttggaa cgacggttgc acaggttcag gcggatcgga cggcggcagt gaggaagata
     1441 ggggcaattt tcggcgcaac cgtggtttta aaggggcaca aaacattggt tgccgcgtcc
     1501 gatacggaaa tctatgtcaa cgaaagtggc aacgcgggat tggcaacggc gggcagtggc
     1561 gacgtattgg gcggcatcat cggcagtctg ctcgcacagg gcgtgccggt ttttgaagcc
     1621 gcctgcgcgg gcgcgtggct gcacggcgcg gcggcggatg tcataaaaga atcggcaggc
     1681 attgcggcgg ggctgttggc tggcgaaatc gccccggcgg caaggtggct gcgcaaccgg
     1741 ataactgaaa gtatgtaaga agatatag
//
LOCUS       DAWGNT010000233         1751 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.233, whole genome shotgun sequence.
ACCESSION   DAWGNT010000233 DAWGNT010000000
VERSION     DAWGNT010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.233"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            119..1492
                     /locus_tag="WHR98_001945"
     CDS             119..1492
                     /locus_tag="WHR98_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002238938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEZ2308569.1"
                     /translation="MSNPFSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLL
                     AAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSY
                     IKNLPLRHTVLFGGMNMDKQTADLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLD
                     EADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQN
                     TTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQVIVFCKTKQSVDRVTRELVRRNLSA
                     QAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARGLDIAELPFVINYEMPAQPEDYV
                     HRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKLLIERIEGFEPQWWEQGGAKP
                     EKTEMREPRQRNRYESARAQREKNTRPETTANDAGAACGKIAGRSRRSRREHRTCALL
                     QPRYGVK"
BASE COUNT          443 a          571 c          414 g          323 t
ORIGIN      
        1 ctatttgtac tgtctgcggc tcgccgcctt gtcctgattt ttgttaatcc actatatttc
       61 cccgtcctat cggtttcccg tttcagacga cataaggtct gaaagaaaga ctacaattat
      121 gagtaatcca ttttcctctt taggtttggg tacggaactc gtttccgcac tgaccgcgca
      181 aggttacgaa aacccgacgc ccatccaagc cgccgccatt cccaaagcac tcgccggtca
      241 tgatttgcta gccgccgcgc aaaccggcac aggcaaaacc gccgccttta tgctgcccag
      301 tctggaacgc ctcaaacgtt acgccaccgc cagcacctcg cccgcgatgc accccgtgcg
      361 tatgctcgtc cttaccccca cgcgcgaact tgccgaccaa atcgaccaaa acgtgcagtc
      421 ctacatcaaa aacctgccgc ttcgccacac cgtcttgttc ggcggtatga atatggacaa
      481 acagaccgcc gatttgcgtg ccggctgcga aatcgtcgtc gccaccgtcg gacggctgct
      541 cgaccacgtc aaacaaaaaa acatcagttt gaacaaagtc gaaatcgtcg ttctggacga
      601 agcagaccgc atgttggata tggggtttat cgacgacatc cgcaaaatca tgcagatgct
      661 gcccaaacaa cgccaaaccc tgctcttttc cgctaccttc tccgcaccga tacgcaaact
      721 ggcgcaagac ttcatgaacg cgcccgaaac cgtcgaagtc gccgcgcaaa acaccaccaa
      781 cgccaacgtc gaacaacaca tcatcgccgt cgataccatt cagaagcgca acctgctcga
      841 acggctgatt gtcgatttgc atatgaacca ggtcatcgtg ttctgcaaaa ccaaacaaag
      901 cgtcgaccgc gtaacgcgcg aactggtgcg ccgcaacctg tccgcacagg cgatacacgg
      961 cgaccgttcc caacaaagcc ggctcgaaac actcaacgcc ttcaaagacg gcagcctgcg
     1021 cgtcctcgtc gccaccgaca tcgccgcgcg cgggctggac attgccgaac tgcccttcgt
     1081 catcaattac gaaatgcccg cccagcccga agactacgtc caccgcatcg ggcgcacggg
     1141 gcgcgcgggc gcggacggcg tggcgatttc cctgatggac gaatccgaac agaaaatgtt
     1201 tgaatccatt aaagagctga ccggcaacaa gctgctcatc gagcgcatcg agggcttcga
     1261 gccgcaatgg tgggaacagg gcggcgcaaa accggaaaaa accgaaatgc gcgaaccgag
     1321 acaacgcaac cgctacgaat ccgccagggc tcagcgcgaa aaaaataccc gaccggaaac
     1381 cacggcaaac gatgcgggcg cggcttgcgg aaaaattgcc ggacgcagcc gccgaagccg
     1441 tcgggaacac cggacgtgcg ccctgctcca accgcgttac ggcgtaaaat aaccctgaaa
     1501 atcaaatgcc gtctgaacat ttcccgtttc agacggcatt tttcaaaccg gactgacgca
     1561 ttgggagcaa ccgcccgcac cggataaatt tcttccgcaa acagtttcag acggcatttg
     1621 ctgcctgtac aatatcattt ccttttccac tcaaaccatc aggatttccc aatgtccacc
     1681 caattcgatg tcgccgtaat cggcgcaggt ccggcaggct cggtcgcatc cgccctgctc
     1741 cgcaaaaaag g
//
LOCUS       DAWGNT010000234         1678 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.234, whole genome shotgun sequence.
ACCESSION   DAWGNT010000234 DAWGNT010000000
VERSION     DAWGNT010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.234"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..61)
                     /locus_tag="WHR98_001946"
     CDS             complement(<1..61)
                     /locus_tag="WHR98_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003691615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HEZ2308570.1"
                     /translation="MKTLLLLIPLVLTACGTLTG"
     gene            complement(184..570)
                     /locus_tag="WHR98_001947"
     CDS             complement(184..570)
                     /locus_tag="WHR98_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002253928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308571.1"
                     /translation="MWKIYKENSTDLNFAIGSIYCQAINLTEFKMWVEKIIREVDLDE
                     IPNYFFDLIDFQSLYDLIDIIGFVPENNLSKNQDNALTGIAFLRGIDVYDPPISKEKA
                     LKALKKHPEIYQRFQHFFPFVELPPL"
     gene            complement(573..818)
                     /locus_tag="WHR98_001948"
     CDS             complement(573..818)
                     /locus_tag="WHR98_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003706679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEZ2308572.1"
                     /translation="MKDSTGQMRLATKDLAEAIKRGEVRSSAFTTKQLKAIEKGESKI
                     PDYTWHHHQDTGRMQLVPEWEHSKTGHIGGTAMDKGK"
     gene            complement(896..1138)
                     /locus_tag="WHR98_001949"
     CDS             complement(896..1138)
                     /locus_tag="WHR98_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002254310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity protein 31"
                     /protein_id="HEZ2308573.1"
                     /translation="MTNLKLDFYSEVIIKDSCPNDLLENGETIKGKKGVVLGISEEDG
                     IIYGYTILLFDIKYCIYIDKKYIIPTGKKFSRDDFY"
     gene            complement(1135..1218)
                     /locus_tag="WHR98_001950"
                     /pseudo
     CDS             complement(1135..1218)
                     /locus_tag="WHR98_001950"
                     /inference="COORDINATES: protein motif:HMM:NF026862.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1296..1607)
                     /locus_tag="WHR98_001951"
     CDS             complement(1296..1607)
                     /locus_tag="WHR98_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013449532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308574.1"
                     /translation="MYQYIIYVLTGDLYLQKDIDENLEFIHQAENNPNEVYSGGGQGF
                     CWDISAEKVVFYHNEFDEEDGWPDLSCSLHTFKTALIAWNAFLQLPKSIHSVVETVIE
                     E"
BASE COUNT          503 a          318 c          273 g          584 t
ORIGIN      
        1 tgccggtcag tgtgccgcag gctgtgagga cgagggggat gaggaggagc agggttttca
       61 tagcggggtt tgtttgatgt tgaacggatt ttgagtgtaa agggatttta agggtttgta
      121 aacaaaaggg gcgaaaatgc cgtctgagcg gcggaaatgg ctttcagacg gcattttgac
      181 tgtttaaagc ggcggcagtt ctacaaacgg aaagaaatgc tgaaacctct gataaatttc
      241 aggatgtttc tttaaggctt ttaatgcttt ttcttttgaa atgggaggat cgtagacatc
      301 tatccccctt aaaaaagcaa taccggttaa tgcattatcc tgattttttg ataagttatt
      361 ttcgggaaca aatcctataa tatcaatcag atcgtatagt gattgaaaat ctatcaaatc
      421 aaaaaaataa tttggaattt catctaaatc cacttccctt atgatttttt cgacccacat
      481 tttaaattcg gtaagattga ttgcttggca atatatactg cctatggcaa aatttaagtc
      541 ggtgctattt tctttataaa ttttccacat aatcatttac ctttatccat tgccgtccct
      601 cctatgtgac cggttttaga atgttcccat tcaggtacaa gctgcattct ccctgtatct
      661 tgatgatgat gccaagtgta atccggtatt ttagattctc ctttttcgat tgcctttagt
      721 tgctttgttg taaaagcaga actacgtact tctcctcgtt taatggcttc cgccaaatcc
      781 ttggttgcca gcctcatttg ccctgtagaa tccttcaatc tgaactcctt atgcttacat
      841 aaacataatt accagtttca gtatctaaaa aacttgctta aattacttaa attagctaat
      901 aaaaatcatc gcgagagaat ttttttccag tcggtataat atatttctta tctatatata
      961 tacaatattt tatatcaaaa agtaaaatag tatagccata gattatacca tcttcttcgc
     1021 ttatacctaa taccactcct ttttttcctt taatagtctc accattttct aacaaatcat
     1081 tagggcaaga atcttttata ataacttcag agtagaaatc taattttaaa ttagtcattt
     1141 gtgtgtaatc tttccatcaa ttgatatatt taaatgctta ccatccctac tagcccatcc
     1201 aagttgctct cttcctgtta atcatggcac agcgtataag cgtggatttg cagtccaatc
     1261 tatatcgctg attctattca ttaagctaat tatgcttatt cctcaatcac agtctccacc
     1321 accgaatgaa tacttttagg caattgcaaa aaagcattcc aagcaattaa agcagtttta
     1381 aaagtatgca gcgaacagct taaatcaggc cagccgtctt cttcatcaaa ttcgttgtga
     1441 tagaaaacta ctttttcagc agaaatatcc cagcaaaaac cttgtccacc tcctgaataa
     1501 acttcattgg gattattttc tgcttgatgg ataaattcta aattttcatc tatgtctttt
     1561 tgtagataaa ggtctcctgt taaaacataa ataatatatt gatacaccgt tcctcgtgta
     1621 tttatctttt gattagaaga attatctaaa aactggcagt agttaaataa ttcaccag
//
LOCUS       DAWGNT010000235         1657 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.235, whole genome shotgun sequence.
ACCESSION   DAWGNT010000235 DAWGNT010000000
VERSION     DAWGNT010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.235"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            294..1463
                     /locus_tag="WHR98_001952"
     CDS             294..1463
                     /locus_tag="WHR98_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEZ2308575.1"
                     /translation="MRKKLTALVLSALPLAAVADVSLYGEIKAGVEGRNIQLQLTEPL
                     QNIQQPQVTKRKSRIRTKISDFGSFIGFKGSEDLGEGLKAVWQLEQDVSVAGGGASQW
                     GNRESFIGLAGEFGTLRAGRVANQFDDASQAIDPWDSNNDVASQLGIFKRHDDMSVSV
                     RYDSPEFSGFSGSVQFVPAQNSKSAYTPAHFVQNKQNKQNQPPTLVPAVVGKPGSDVY
                     YAGLNYKNGGFAGNYAFKYAKHANVGRDAFELFLLGSGSDEAKGTDPLKNHQVHRLTG
                     GYEEGGLNLALAAQLDLSENADKTKNSTTEIAATASYRFGNAVPRISYAHGFDFIERG
                     KKGENTSYDQIIAGVDYDFSKRTSAIVSGAWLKRNTGIGNYTQINAASVGLRHKF"
BASE COUNT          421 a          392 c          423 g          421 t
ORIGIN      
        1 gccgcgtgtg tttttttatg gcgttttaaa aagccgagac tgcatccggg cagcagcgca
       61 tcggctcgca cgaggtctgc gcttgaattg tgttgtagaa acacaacgtt tttgaaaaaa
      121 taagctattg ttttatatca aaatataatc atttttaaaa taaaggttgc ggcatttatc
      181 agatatttgt tctgaaaaat ggttttttgc gggggggggg gtataattga agacgtatcg
      241 ggtgtttgcc cgatgttttt aggtttttat caaatttaca aaaggaagcc gatatgcgaa
      301 aaaaacttac cgcgctcgta ttgtccgcac tgccgcttgc ggccgttgcc gatgttagcc
      361 tgtacggcga aatcaaagcc ggcgtggaag gcaggaacat ccagctgcag ttgaccgaac
      421 cgctccaaaa tattcaacaa cctcaggtta ctaagcgcaa aagccgcatc aggacgaaaa
      481 tcagcgattt cggctcgttt atcggcttta aggggagcga ggatttgggc gaagggctga
      541 aggctgtttg gcagcttgag caagacgtat ccgttgccgg cggcggcgcg tcccagtggg
      601 gcaacaggga atcctttatc ggcttggcag gcgaattcgg cacgctgcgc gccggtcgcg
      661 ttgcaaatca gtttgacgat gccagccaag ccattgatcc ttgggacagc aataatgatg
      721 tggcttcgca attgggtatt ttcaaacgcc acgacgatat gtcggtttcc gtacgctacg
      781 attcccccga attttccggt tttagcggca gcgtccaatt cgttccggcc caaaacagca
      841 agtccgccta tacgccggct cattttgttc agaataagca aaataagcaa aatcagccgc
      901 ctactctcgt tccggctgtt gtcggcaagc cggggtcgga tgtgtattat gccggtctga
      961 attacaaaaa tggcggtttt gccgggaact atgcctttaa atacgcgaaa cacgccaatg
     1021 tgggccgtga tgcttttgag ttgttcttgc tcggcagcgg gagtgatgaa gccaaaggta
     1081 ccgatccctt gaaaaaccat caggtacacc gcctgacggg cggctatgag gaaggcggct
     1141 tgaatctcgc cttggcggct cagttggatt tgtctgaaaa tgccgacaaa accaaaaaca
     1201 gtacgaccga aattgccgcg actgcttcct accgcttcgg taatgcagtt ccacgcatca
     1261 gctatgccca tggtttcgac tttatcgaac gcggtaaaaa aggcgaaaat accagctacg
     1321 atcaaatcat cgccggcgtt gattatgatt tttccaaacg cacttccgcc atcgtgtctg
     1381 gcgcttggct gaaacgcaat accggcatcg gcaactacac tcaaattaat gccgcctccg
     1441 tcggtttgcg ccacaaattc taaatatcgg ggcggtgaag cggatagctt tgtttttgac
     1501 ggctcgcctt cattctttga ttgcaatctg actgccaatc tgcttcagcc ccaaacaaaa
     1561 atccggatac ggaagaaaaa cggcaataaa gacagcaaat accgtctgaa agattttcag
     1621 acggtatttc gcattttcgg cttggtttgc acatata
//
LOCUS       DAWGNT010000236         1649 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.236, whole genome shotgun sequence.
ACCESSION   DAWGNT010000236 DAWGNT010000000
VERSION     DAWGNT010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.236"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(20..682)
                     /locus_tag="WHR98_001953"
     CDS             complement(20..682)
                     /locus_tag="WHR98_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEZ2308576.1"
                     /translation="MIQAVLFDLDGTLADTALDLGGALNTLLARHGLPAKSMDEIRTQ
                     ASHGAAGLIKLGAGITPDHTDYTRWRAEYLDEYDSRYAQDTTLFGGVNELIAELGKRG
                     IKWGIITNKPMRFTDKLVPKLGFIVPPAVVVSGDTCGEPKPSVKPMLYACGQIHADPQ
                     HTLYVGDAERDIQAGRNAGMKTVLAEWGYIAPEDDTGSWQADFHIRTPLDLLECLDKI
                     QS"
     gene            complement(721..1548)
                     /locus_tag="WHR98_001954"
     CDS             complement(721..1548)
                     /locus_tag="WHR98_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003713490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEZ2308577.1"
                     /translation="MKLDIYALLERALLSGDPDEKGRLTDEAFAAVQNADGAEANAPP
                     ADFPRAGRPDKPVLVAPSQLTPRKMNTTEGYAAMLHAIAHIEFNAVNLALDAAYRFRT
                     LPFQFVRDWVKVAKEEVYHFRLMRDRLRAFGFDYGSFEAHNHLWDMAYKTAYDPLLRM
                     ALVPRVLEARGLDVTPGIRAKVAQRGDSETCGVLDIIYRDEVGHVAIGNHWYQHLCRE
                     RGLEPITLFRSLIARYDMFIFRGYVNIEAREKAGFSRFELDMLEDFEQGLKQNKHAV"
BASE COUNT          312 a          436 c          506 g          395 t
ORIGIN      
        1 tttgtggggc ggatattttt caggactgta ttttgtccag acattcgagc agatcgagcg
       61 gcgtgcggat gtggaaatcc gcctgccatg agccggtatc gtcttcggga gcgatgtagc
      121 cccattcggc gaggacggtt ttcatgccgg cgttgcggcc tgcttggatg tcgcgttcgg
      181 catcaccgac gtagagtgtg tgttgcgggt cggcgtggat ttgtccgcac gcatacagca
      241 tgggtttgac gctgggcttg ggttcgccgc aggtgtcgcc gctgacgacg acggcgggtg
      301 ggacgatgaa gccgagtttg gggacgagtt tgtcggtgaa gcgcatgggt ttgttggtga
      361 tgatgcccca tttgatgccg cgttttccga gttcggcgat gagttcgttt acgccgccga
      421 agagggtggt gtcttgggcg tagcggctgt cgtattcgtc taggtattcg gcgcgccatc
      481 gggtgtagtc ggtgtggtcg ggggtgatgc ctgcgccgag tttgatcagt cctgccgcgc
      541 cgtggctggc ttgggtgcgg atttcgtcca tgctttttgc aggtagtccg tggcgggcga
      601 gcagggtgtt gagtgcgccg ccgaggtcta gggcggtgtc ggcaagcgtg ccgtcgaggt
      661 cgaacaatac ggcttgtatc atgtgttttc cttttttata aagtgcggga ctgaagggtt
      721 tcagacggca tgtttatttt gtttcaaacc ctgctcgaaa tcttccaaca tatccaattc
      781 aaagcggctg aagcctgctt tttcgcgcgc ttcgatgttc acatagcccc ggaagataaa
      841 catatcgtaa cgggcaatca gactgcggaa cagggtaatc ggttccaaac cgcgttcgcg
      901 gcagaggtgt tgataccaat ggttgccgat ggcgacatga cccacttcgt cgcggtaaat
      961 gatgtccaat acgccgcagg tttccgaatc gccgcgctgc gccaccttcg cgcgtatccc
     1021 cggcgtaacg tccagcccgc gcgcttccaa cacgcgcggt accaacgcca tacgcaacag
     1081 cgggtcgtag gcggttttgt acgccatatc ccacaaatgg ttgtgcgcct cgaaactgcc
     1141 gtaatcgaag ccgaaagcgc gcaatctgtc gcgcatcagg cggaaatggt acacctcttc
     1201 cttcgccact ttcacccagt cgcggacaaa ctgaaacggc agcgtgcgga aacggtatgc
     1261 cgcgtccaaa gctagattga cggcgttgaa ttcgatatgc gcaatcgcgt gcagcatcgc
     1321 cgcataacct tcggttgtgt tcattttgcg cggggtcagt tgcgacggcg cgaccaaaac
     1381 aggcttgtcc ggccgtcccg ctcgggggaa gtccgccgga ggcgcgtttg cttccgcccc
     1441 gtccgcattt tgaacggcgg caaacgcctc atccgtcagc cgtccttttt catctgggtc
     1501 gcccgaaagc agggcgcgtt ccagcaaagc ataaatatcg agtttcatct caagtccgcc
     1561 gtgttcggaa aacaaatatt atagcgtttt aaaaaaacaa gatgaggcat ataatctccg
     1621 cgattcggca ttccgcgccc aaaccgtca
//
LOCUS       DAWGNT010000237         1647 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.237, whole genome shotgun sequence.
ACCESSION   DAWGNT010000237 DAWGNT010000000
VERSION     DAWGNT010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.237"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..874
                     /gene="tuf"
                     /locus_tag="WHR98_001955"
     CDS             <1..874
                     /gene="tuf"
                     /locus_tag="WHR98_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEZ2308578.1"
                     /translation="VCSAADGPMPQTREHILLARQVGVPYIIVFMNKCDMVDDAELLE
                     LVEMEIRDLLSSYDFPGDDCPIVQGSALKALEGDAAYEEKIFELAAALDSYIPTPERA
                     VDKPFLLPIEDVFSISGRGTVVTGRVERGIIHVGDEIEIVGLKETQKTTCTGVEMFRK
                     LLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTP
                     FFANYRPQFYFRTTDVTGAVTLEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREG
                     GRTVGAGVVSSVIA"
     gene            892..1203
                     /gene="rpsJ"
                     /locus_tag="WHR98_001956"
     CDS             892..1203
                     /gene="rpsJ"
                     /locus_tag="WHR98_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012504051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEZ2308579.1"
                     /translation="MANQKIRIRLKAYDYALIDRSAQEIVETAKRTGAVVKGPIPLPT
                     KIERFNILRSPHVNKTSREQLEIRTHLRLMDIVDWTDKTTDALMKLDLPAGVDVEIKV
                     Q"
     gene            1324..1647
                     /locus_tag="WHR98_001957"
                     /pseudo
     CDS             1324..1647
                     /locus_tag="WHR98_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014573927.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          444 a          428 c          402 g          373 t
ORIGIN      
        1 ggtatgttcc gcagccgacg gtcctatgcc gcaaacccgc gaacacatcc tgctggcccg
       61 ccaagtaggc gtaccttaca tcatcgtgtt catgaacaaa tgcgacatgg tcgacgatgc
      121 cgagctgttg gaactggttg aaatggaaat ccgcgacctg ctgtccagct acgacttccc
      181 cggcgacgac tgcccgattg tacaaggttc tgcactgaaa gccttggaag gcgatgccgc
      241 ttacgaagag aaaatcttcg aattggctgc tgcattggac agctacatcc cgactcccga
      301 gcgtgccgtg gacaaacctt tcttgttgcc tatcgaagac gtattctcta tttctggtcg
      361 tggtacagta gtaaccggtc gtgtagagcg cggtatcatc cacgtcggtg acgagatcga
      421 aatcgtcggt ctgaaagaaa ctcaaaaaac cacttgtacc ggtgttgaaa tgttccgcaa
      481 actgctggac gaaggtcaag caggcgacaa cgtaggcgta ttgctgcgcg gtaccaaacg
      541 tgaagacgta gagcgtggtc aagtattggc taaaccgggt acaatcactc ctcacaccaa
      601 gttcaaagca gaagtatacg tactgagcaa agaagagggc ggccgccata ccccgttctt
      661 cgccaactac cgtccccaat tctacttccg taccaccgac gtaaccggcg cggttacttt
      721 ggaagaaggt gtggaaatgg taatgccggg cgagaacgta accattaccg tagaactgat
      781 tgcgcctatc gctatggaag aaggcctgcg ctttgcgatt cgcgaaggcg gccgtaccgt
      841 gggtgccggc gtggtttctt ctgttatcgc ttaattgaag gatattgata aatggcaaac
      901 caaaaaatcc gtatccgcct gaaagcttat gattacgccc tgattgaccg ttctgcacaa
      961 gaaatcgttg aaactgcaaa acgtaccggt gccgttgtaa aaggcccgat tcctttgccg
     1021 accaaaatcg agcgtttcaa cattttgcgt tctccgcacg tgaacaaaac ttcccgtgaa
     1081 caattggaaa tccgcaccca cttgcgcctg atggacatcg tggattggac cgataaaact
     1141 accgatgcgc tgatgaagct ggatttgccg gccggtgttg atgtagaaat caaagtccaa
     1201 taattcggac tattgaaaat ccccaagcaa tcaatgcttg gggatttttt atgttatgcc
     1261 gagacctttg caaaattccc caaaatctcc taaattccca ccaagacatt taggggattt
     1321 ctcatgagca ccttctttca acaaaccgca caagccatga ttgccaaaca catcgaccgt
     1381 ttcccgctat tgaagttgga tcaagtgatt gattggcagc cgatcgagca aaggtacgac
     1441 catctatgcc gataaaggct atgacagtgc ggaaaaccgg caacatctga aagaacatca
     1501 gttaccggac ggcattatgc gcaaagcctg ccgcaaccgt ccgctgacgg aaacgcaaac
     1561 caaacgcaac cgatatttgt cgaagacccg ttatgtggtc gaacaaagct tcggtacgtt
     1621 acaccgcaaa ttccgctatg cgcgggc
//
LOCUS       DAWGNT010000238         1573 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.238, whole genome shotgun sequence.
ACCESSION   DAWGNT010000238 DAWGNT010000000
VERSION     DAWGNT010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.238"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            41..139
                     /locus_tag="WHR98_001958"
     CDS             41..139
                     /locus_tag="WHR98_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014575118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="eamA-like transporter family protein"
                     /protein_id="HEZ2308580.1"
                     /translation="MAVVFLDERPNTQEWIGLGLVTAGVLTLALKR"
     gene            complement(210..1529)
                     /locus_tag="WHR98_001959"
                     /pseudo
     CDS             complement(210..1529)
                     /locus_tag="WHR98_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002239425.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
BASE COUNT          288 a          429 c          506 g          350 t
ORIGIN      
        1 tcttgccgga tgctgcaaac aacgccggtt tgcattcctg atggcggtgg ttttcttaga
       61 cgaacgcccg aacacgcagg aatggatagg cttggggctg gttacggcgg gcgtgttgac
      121 gctggcactg aaacggtaaa gccgcaagaa ataaatgaaa tgccgtctaa aaaactgttt
      181 tcagacggca ttttcgtttc tgtccatcct cagcactcga ccacgcgcac ggatacgggg
      241 acggcttttt tccggagcgt ggcggcgagt ccggcaagcg aggtttcttt gtaggtcgcc
      301 ttcatatccc ggccggtttg cagcatggtt cggatgactt cgtcgagcga gacttttttg
      361 tccgtgccgt cttccaaaag cgcgagcgtg ccgagtttga gggctttttc ggcggcgatg
      421 ccgttgcgct cgatgcaggg gatttgcacc agtccgccga cggggtcgca agtcagcccc
      481 aaatggtgtt ccatcgccat ttcggcggcg ttttccactt gtttgggcgt gccgccgatg
      541 acttcggcgt atgcgcccgc cgccatcgaa cacgctacgc cgacttcgcc ctgacagccg
      601 acatccgcac cggaaatgga ggcgttggtc ttgtagagga tgccgattgc gcctgcggtg
      661 agcaggaagt tttcgacgcg ttcctgtgtg gcgtgcggat tgaacttgcg gaaatagtgc
      721 aatacggcgg gaatgatgcc tgccgcgccg ttggtcggtg cggtaacgac gcgtccgccg
      781 gcggcgtttt cttcgttgac cgccatggcg tacaccatcg gccagagctg ggtgttgacg
      841 atttcggttt cgcgcaggac tttgagcttg gtggcaagat gcggggcgcg gcggcggacg
      901 ttcaatcagc cgggcagttc gccgtccgca cccaagccgc gtttgatgca gccttccata
      961 acctcggcaa cggcagcggc gcggcggcgg atttcggctt cgccgcatcc tgcaagcgcg
     1021 gcttcgtttg ccaacacgac ttcggagatg tcgagccggt tcagacggca tcgggcaagc
     1081 agttcggcgc aactggtata gggataggga acggcttttt ccgtttccgc ctgccggtca
     1141 aaatcttctt cggtaacgac aaagccgccg ccgaccgaat aataaacctg ttcattcaat
     1201 accgtgccgt ctgaagcata ggcggtaaaa cgcaggccgt tggggtgttt gggcagcact
     1261 tgattgccga gtatgttcag gtcgcggtcg gggatgaagc ggatttcttg cccgttgagc
     1321 cggaggatgt gctgcgtgcg gatgcgttcg aggcgttcgg gaatgccggc aagcgggatg
     1381 tcgtgcggca ggctgccttc caaaccgagc atcagcgcgt caaatgtacc gtgtccgtat
     1441 ccggtcagtg cgagcgagcc gtaaatgtcg atgacgatgc gaacagcctg tgcatccaaa
     1501 cctgccgcaa aggcggcggc tgccttcatc gggccgaccg tatgcgaact ggaaggcccg
     1561 ataccgattt tga
//
LOCUS       DAWGNT010000239         1557 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.239, whole genome shotgun sequence.
ACCESSION   DAWGNT010000239 DAWGNT010000000
VERSION     DAWGNT010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.239"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(131..1186)
                     /locus_tag="WHR98_001960"
     CDS             complement(131..1186)
                     /locus_tag="WHR98_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002244345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEZ2308581.1"
                     /translation="MKKSLIALTLAALPVAAMADVTLYGTIKAGVEVSRVKDAGTYKA
                     QGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGL
                     KGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTGDVLGLGTIGRVESREISVRYDSPVF
                     AGFSGSVQYVPRDNANDKDKYTHKQSSRESYHAGLKYENAGFFGQYAGSFAKYADLNK
                     DAERVAVNTPNAHAVKDYQVHRVVAGYDANDLYVSVAGQHTDIGKKHEQTQVAATAAY
                     RFGNVTPRVSYAHGFKAKVNGKKAARYQYDQVIVGVDYDFSKRTSALVSAGWLQEGKD
                     KNKTEKTASMVGLSHKF"
BASE COUNT          404 a          344 c          372 g          437 t
ORIGIN      
        1 ataaaaaaga ctaaaaacag gaaaaagcca aacagaaaac agcgaaacag aaaaaagcca
       61 aacagaaaac agccaaacag aaaaaagcct gtctggcgac aggctttttg ttgataccaa
      121 tcttttcaga ttagaatttg tgactcaagc caaccatgct ggcagttttt tcagttttgt
      181 ttttgtcttt gccttcttgc aaccaaccgg cagaaaccag agcggaagtg cgtttggaga
      241 agtcgtagtc gacaccaacg ataacttggt cgtattgata acgtgctgct ttcttaccat
      301 tcactttagc tttgaagccg tgggcgtaag aaacgcgagg cgttacgttg ccaaaacggt
      361 aagcggcagt agcggcaact tgagtttgct cgtgtttttt accaatatcg gtatgctgac
      421 cggcaacaga aacgtacaga tcattagcat cgtaaccggc aactacgcgg tgtacttggt
      481 aatccttaac agcatgggca tttggagtat ttactgcaac acgttctgca tccttgttca
      541 aatcagcata tttggcaaaa gagcctgcgt attgaccgaa gaaaccggca ttttcgtatt
      601 tcagaccggc gtggtaagac tcacggctgg actgcttatg tgtgtatttg tccttatcat
      661 tcgcattgtc gcgcggaacg tattgtacgc tgccgctgaa gcctgcaaat acaggggaat
      721 cgtaacgtac ggagatttca cggctttcta cacggccgat agtacccagt cccagtacat
      781 ctccggtgtt agaaccagat tcccatgcat tgacgttgtc gccgctgtct ttcaatacgg
      841 tgttcagatt accggcgcgg acggtaccga agccgccttt caagccgatg aaggactggc
      901 ggttacccca gccgctgtta gtgccggcga tggaggcttt ttgttccaac tgccaaatgg
      961 ctttcatgcc gttgccgagg tcttcttgac ctttgaaacc gattttagaa ccgaagtcgg
     1021 caatttgggt tgcagtttta gattttccgc cttgagcttt atatgtacca gcatctttta
     1081 cgcgagaaac ttctacgcct gctttaattg taccgtacaa ggtaacgtca gccattgctg
     1141 caacaggcag ggcagccagt gtcagggcaa tcagggattt tttcattgct gtattccttt
     1201 tcgtagttaa gaaatttaag caggccgagc tttccaagcc gcttagcttt gcatttaccg
     1261 ccgacgtttt cggcgattcc atgtctgaaa ctatagatgt tcctgtctga aaaaacaaac
     1321 ttctgcctgt ttttgtgtgg aattcgatgt gtattttgaa gggcggatag agatattatg
     1381 ggtatttttt gttttataac atatggttat ttaaattttt taagatttgc atttttacaa
     1441 cacttactcg ggagggtatt ggagggcatt gcaaaccggg ggttataaag acggcaaaaa
     1501 acgcacacgc ggtttctttc ggaacgggcg gatgcaaaac ccgcccctgc ggcagga
//
LOCUS       DAWGNT010000240         1483 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.240, whole genome shotgun sequence.
ACCESSION   DAWGNT010000240 DAWGNT010000000
VERSION     DAWGNT010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.240"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(78..289)
                     /locus_tag="WHR98_001961"
                     /pseudo
     CDS             complement(78..289)
                     /locus_tag="WHR98_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003692461.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(399..710)
                     /locus_tag="WHR98_001962"
     CDS             complement(399..710)
                     /locus_tag="WHR98_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002241961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HEZ2308582.1"
                     /translation="MKYKSEALAAIHEMMEGAYNIGAIDKKTMRGFDKSCLTEIKPLS
                     GGDIKAIREKEALSQAAFAIYLNVGKNHVSAWERGVKKPSGAALKLLTIVKNKGIEAI
                     A"
     gene            complement(707..1074)
                     /locus_tag="WHR98_001963"
                     /pseudo
     CDS             complement(707..1074)
                     /locus_tag="WHR98_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014582268.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
BASE COUNT          286 a          404 c          334 g          459 t
ORIGIN      
        1 aaaaacgtcg gcgttaaggg aaggggatcg agaatttgag ccgttgttcc aaaatgccgt
       61 ctgaatccgt ttgagattca gacggcattt aaacagttct gcgccccgcc cgttttgcct
      121 tcaagtccgc gccgcttaaa tccaatcccc ctgcaacggg cgcaaaaaaa tccccgtgcc
      181 ttgcgaccgg ggatgtttcg ggtttcgcgc ccgtctgcgc cgtgccttgc tgtcgggcta
      241 tgccgtctgc accgccgccg tttcggcttg gtttgatgcg gtcgggcatt tgtgcggcta
      301 cgccctgata ttcggttcgg cggccttgcc tgtcttggca ggcatattca gcagcgcgtc
      361 tattgtgaac ttgctgattt tgccgtttgc caagtcgtct acgcaatggc ttcgataccc
      421 ttgtttttga cgatggtcag cagcttcaac gccgcgccgc tgggcttttt aacgccccgc
      481 tcccaagccg aaacgtgatt ttttcccacg ttgagataga tggcgaaagc ggcttgcgat
      541 agtgcctcct tctccctgat tgccttgatg tctccgccgc tcaacggttt gatttcggtc
      601 aggcaggact tgtcaaagcc gcgcatggtc tttttgtcga ttgcgccgat gttgtaagcc
      661 ccttccatca tttcatgaat ggcggctaat gcctcgcttt tgtatttcat gattctatct
      721 ccgtgataat gccgtcttct ttcaaagccg ccagctctgc ccgcgtgtat ttcagataat
      781 atgcggcggc ttttcggtaa acgtccagtt ctttatccga aatgttttcc ctgtcgttct
      841 tggcaaaggc gtaaacgaaa atgccctatc tgcctgtttg aacaatatca ggctgcgata
      901 gccgccgctt ctgccttgtc cttgccttgc tatgcgctgc ttaatcacac cgccgcctaa
      961 atctgcgtct atcagcccgt tatccgcccg ctctaccgct tccagcagct cggaatcgtt
     1021 gattttgtgc ttcttggcaa atttcactat ccattggttt ttgaatatcc gcattgtgta
     1081 gccgttgatt agtgatactt ggaattatac cagagacaga caacacggca agctgccttt
     1141 tttatgcccc gcaatttctc cgtttatgcc gcctgaaaca ctggcggcta acctgattat
     1201 tttttaatca atcgctttta atggctcaaa ttgcgttttt agcgcgtttc gctgtcttcc
     1261 tatgtcccca tatataacca agtggtttaa ccgccattcc tgctcaaaat aggcgcggtt
     1321 ccgtgcgttt tggcttttca ttccgctacg ctcccactgc caagacggtg aaaaaccgga
     1381 aaaccccaaa agttgttacc gattcgttac catttgttac cgcatttgtt accaattttt
     1441 tatctttttc ttattttata gtgaattaaa tttaaaccgg tac
//
LOCUS       DAWGNT010000241         1403 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.241, whole genome shotgun sequence.
ACCESSION   DAWGNT010000241 DAWGNT010000000
VERSION     DAWGNT010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1403
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.241"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            405..560
                     /locus_tag="WHR98_001964"
     CDS             405..560
                     /locus_tag="WHR98_001964"
                     /inference="COORDINATES: protein motif:HMM:NF017953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase"
                     /protein_id="HEZ2308583.1"
                     /translation="MSEGKTKPSPKKGVVFPFIKKLLSINEINPNDPTIGFILLSRNN
                     PDTDYES"
     gene            complement(650..1099)
                     /locus_tag="WHR98_001965"
     CDS             complement(650..1099)
                     /locus_tag="WHR98_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002214937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HEZ2308584.1"
                     /translation="MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRA
                     ALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEGFCIRLNGIARGALDSKFMLKAV
                     AIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLFK"
     gene            complement(1187..>1403)
                     /locus_tag="WHR98_001966"
     CDS             complement(1187..>1403)
                     /locus_tag="WHR98_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002243081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEZ2308585.1"
                     /translation="QELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVL
                     AKLKDQASVGAPAPKGPAKPAIPAAKK"
BASE COUNT          433 a          334 c          230 g          406 t
ORIGIN      
        1 attttgcaaa ggtctcctta tgtctaaagg tgcaaacatg ccttaaatta ccatagtgga
       61 ttaaatttaa atcaggacaa ggcgaggcaa cgctgtactg gtttaaattt aatccactat
      121 atattgcata ggcaaaatac aagcctataa cgaattggaa acaaaatgcc gtctgaaaac
      181 atcttcagac ggcattataa aatctgttca ccttttcaga tgagtaatgt acacccttat
      241 acaatttttg ctactatgcc ccataaatcc acggctaaag atatccttat tatgtcctat
      301 gatttatcga aacgacttgt aatcggctta gcatcaagtg ccctattcga cttatccgaa
      361 tcggataata tatttagaat ggaaggggca gaaacctata ggcaatatca gagggaaaaa
      421 caaaaccatc ccctaaaaaa ggcgttgtct ttccatttat taaaaaactt ctgtcaatca
      481 atgaaataaa cccaaacgac ccaacgattg ggtttattct tttatccaga aacaatccag
      541 atacagatta cgagtcataa ctataggctt aatattacac gattttcatt ccatcaaggc
      601 ggaaaaccgc acaaatactg aaacactatc gatcgatttg taaacaagcc tacttaaata
      661 acttgcagtc cttatcattt cctttaaaat aatccagccc gtcactacac gaactggcgg
      721 acttcttgca aataaaggtt actagatttt cattcatctt aataataaaa ggatttttat
      781 ctttatctat ggctaccgcc ttcaacatga atttactgtc taaagccccg cgcgcgattc
      841 cattcaaacg gatacaaaag ccttctgcct ctttaatcgg caaacttggc catttggtag
      901 atgtttgttt aaacctccca ttctgcagat aaaacttttc cataaaatgt gcattttcta
      961 acaaggctgc ccgcactgca tttatctttg ctttctcaac ataattgcga tagctcggat
     1021 aaacaattaa agcaagtaca gacaatatca agaccactga tattaattca accagcgtaa
     1081 acccccgatt atcagtcatt actttacttc caataagaac agattattca acatatttct
     1141 ttgaacagac ttactatccc attcaacagt atgcatattt cccactctat tttttagcgg
     1201 ccggtatagc cggtttggct gggccttttg gtgcgggcgc gccgacggaa gcctgatcct
     1261 tcagcttcgc cagcaccgca gggccgatgc cctttacctt ggtcaaatcg tccacagact
     1321 tgaacgcacc gttttgcgca cggtattccg caatggcctt cgccttcgca gggcctatgc
     1381 ccggcagcgc ctccaactcc tgc
//
LOCUS       DAWGNT010000242         1401 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.242, whole genome shotgun sequence.
ACCESSION   DAWGNT010000242 DAWGNT010000000
VERSION     DAWGNT010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.242"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..330
                     /locus_tag="WHR98_001967"
     CDS             <1..330
                     /locus_tag="WHR98_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003696591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HEZ2308586.1"
                     /translation="IIATTVPAQQTFLDAAELMQWSRETEWLGLNVIAHRNFGKQHAQ
                     VEFEAYFRDGQHRSAHHELSGFVNIGGQWYFIDPTVPLPTMKQPCICGSEKKFKACCG
                     KYLKPVA"
     gene            complement(548..1342)
                     /locus_tag="WHR98_001968"
     CDS             complement(548..1342)
                     /locus_tag="WHR98_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEZ2308587.1"
                     /translation="MLHRLQKVVRHIAQTEIMPRFLNTPSHRKEDGSMLSEADIAAQT
                     AFAAALPLLIDCPMLGEEMSRQEQSALWEQYSGEKGLWIVDPIDGTNNFVNGLPHFAV
                     SVAFVRNGRAELGVIYNPVSGECFYAERGQGAFLNGTRLPLRLVEKKLNEAIAGVEIK
                     YLRSGKLSSRMSTLAPFGTIRSMGSSTLDWCYLACGRYDVYVHGGQKLWDYAAGALIF
                     EEAGGRLTTLEGDGFWSGEHVFKRSVVAALEPKLFERWVGWIRENQ"
BASE COUNT          371 a          415 c          315 g          300 t
ORIGIN      
        1 atcatcgcca ctaccgttcc ggcgcaacaa acattcctcg atgccgccga actgatgcag
       61 tggagcagag aaaccgaatg gctgggcttg aatgtcatcg cacaccgcaa cttcggtaaa
      121 cagcacgccc aagtcgaatt tgaagcctac ttccgagacg gacaacaccg atccgcgcat
      181 cacgaactgt ccggcttcgt caacatcggc ggacaatggt atttcatcga tccgactgtt
      241 ccgctgccta ccatgaaaca gccctgcatt tgcggttctg aaaagaaatt caaagcctgc
      301 tgcggcaaat atctgaaacc tgtcgcataa aaatgccgtc tgaacgttca gacggcattt
      361 tcaacgcgca aaaaaaaacc attcatacca agggtaagta tgaatggtca atacattgcg
      421 ggaaaacgtc ttacttgctg cactgccgaa aagggagaaa cggcagcggt aatcagcgga
      481 aaggattgta cccgaattaa tgttaagaaa cgttaattgt gaaaatatat taacaaacct
      541 gttgaaccta ttggttttcc cgtatccacc cgacccagcg ttcaaacagc ttcggttcga
      601 gcgcggcaac gactgagcgt ttgaacacgt gttcaccact ccaaaacccg tcgccttcca
      661 aagtcgtcag cctgccgccc gcctcctcga aaatcaacgc acccgcagca tagtcccaca
      721 gcttctgccc gccgtggaca taaacatcgt aacgcccgca cgccagataa caccagtcca
      781 acgtactgct gcccatactg cgtatcgtcc cgaaaggcgc gagcgtactc atgcggctgg
      841 aaagttttcc ggaacggaga tatttgattt ccacgcccgc aatcgcctca ttgagttttt
      901 tttcgaccaa acgcaaaggc aggcgcgtcc cgtttaaaaa cgcaccctgc ccgcgttcgg
      961 cgtaaaaaca ttccccgctg accggattgt agattacgcc caattcggcg cgcccgttgc
     1021 ggacaaacgc caccgatacc gcaaaatgcg gcagcccgtt gacaaaatta tttgtcccgt
     1081 caatcggatc gacaatccac agcccctttt cccccgaata ttgttcccac aaagccgact
     1141 gttcctgccg cgacatttcc tcgcccaaca tcgggcaatc gatcagaagc ggcaacgcgg
     1201 cagcaaaagc cgtctgcgcg gcaatgtccg cctcgctgag catggaaccg tcttccttgc
     1261 ggtgggacgg cgtattcaaa aaacgcggca taatttcggt ttgcgcgata tggcgcacga
     1321 ctttctgcaa acggtgtaac acttcctact gtcctcatat tttgaacttg cggcacgcga
     1381 acgtatatag tggattaaat t
//
LOCUS       DAWGNT010000243         1337 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.243, whole genome shotgun sequence.
ACCESSION   DAWGNT010000243 DAWGNT010000000
VERSION     DAWGNT010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.243"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..537
                     /locus_tag="WHR98_001969"
     CDS             <1..537
                     /locus_tag="WHR98_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-layer family protein"
                     /protein_id="HEZ2308588.1"
                     /translation="TQAAEAGAGIATGAVTVGNAWEAPVGALSKAKAAKQAIPTQTVK
                     ELDGLLQESKNIGAVNTRINIANSTTRYTPMRQTGQPVSAGFEHVLEGHFHRPIANNR
                     SVFTISPNELKVILQSNKVVSSPVSMTPDGQYMRTVDVGKVIGTTSIKEGGQPTTTIK
                     VFTDKSGNLITTYPVKGN"
     gene            544..1053
                     /locus_tag="WHR98_001970"
     CDS             544..1053
                     /locus_tag="WHR98_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002219760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308589.1"
                     /translation="MSNFEKKYILELNDALSHLNHNSTSFDLLKVLISWLSNDIVIDK
                     FKILGYDFSKYIEMNPDDYPVEKSILNREEIIYLKNNIYRKISSGNFKFQYFVQYIRD
                     ILEYLFIEHIERVCPYCEWGEMQKLEEQNTHETVYLCTQCGCAFYNDNSQFLLKTPLT
                     IPMKRDEFK"
BASE COUNT          436 a          255 c          261 g          385 t
ORIGIN      
        1 actcaggctg ccgaagcggg cgcgggaatc gccacgggtg cggtaacggt aggcaacgct
       61 tgggaagcgc ctgtgggggc gttgtcgaaa gcgaaggcgg ccaagcaggc tataccaacc
      121 cagacagtta aagaacttga tggcttacta caagaatcaa aaaatatagg tgctgtaaat
      181 acacgaatta atatagcgaa tagtactact cgatatacac caatgagaca aacgggacaa
      241 ccggtatctg ctggctttga gcatgttctt gaggggcact tccataggcc tattgcgaat
      301 aaccgttcag tttttaccat ctccccaaat gaattgaagg ttatacttca aagtaataaa
      361 gtagtttctt ctcccgtatc gatgactcct gatggccaat atatgcggac tgtcgatgta
      421 ggaaaagtta ttggtactac ttctattaaa gaaggtggac aacccacaac tacaattaaa
      481 gtatttacag ataagtcagg aaatttgatt actacatacc cagtaaaagg aaactaacta
      541 aatatgagta actttgaaaa aaaatatatt ttagaattaa atgatgcttt aagccattta
      601 aatcataact ctacctcatt tgatttattg aaagttttga tttcatggtt atcaaacgat
      661 attgtcattg ataaatttaa aattttaggt tatgacttta gtaaatatat cgaaatgaat
      721 cccgatgact atccggttga aaaatctata ttgaatagag aggaaattat ttatctcaaa
      781 aacaatattt atcgtaaaat atcatcagga aattttaaat ttcaatactt tgtacaatat
      841 attagagata ttttagaata tttatttatt gaacatattg aaagagtctg tccttactgc
      901 gaatggggtg aaatgcaaaa attagaagaa caaaatacgc atgaaacggt gtatctctgt
      961 actcaatgtg gatgtgcttt ttataacgat aattcacaat ttttattaaa aaccccttta
     1021 accattccaa tgaaacgtga tgaatttaaa taaacaagcc gtagcctgca tgaaccctaa
     1081 aatccacgtg tagcgtgtgt gcgccagcac gcatgcgttc catgatttac ggctcaatgc
     1141 cgtctgaaaa gctcacaatt tttcagacgg catttgttat gcaagtaaat attcagattc
     1201 cctgtatgct gtacagacgc gggagtgtta agcccccctt gtttgaagct ccgcggctcc
     1261 tgccgagctt caccgacccc gttgtgccca agctctctgc tcccggcggc tatatcgtcg
     1321 acattccgaa aggcaat
//
LOCUS       DAWGNT010000244         1269 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.244, whole genome shotgun sequence.
ACCESSION   DAWGNT010000244 DAWGNT010000000
VERSION     DAWGNT010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.244"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            41..373
                     /locus_tag="WHR98_001971"
     CDS             41..373
                     /locus_tag="WHR98_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003707437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general secretion pathway protein GspG"
                     /protein_id="HEZ2308590.1"
                     /translation="MQILSFQPDIAERMLEGTEGESVHRDAQFVQTANGYWIAWHEGV
                     AALLAPDTPPGIPCFWVEGAESLEELCVMVERGEFDEVEEFDGDDDEWLETAQGCGHH
                     GDACACGH"
     gene            705..1214
                     /locus_tag="WHR98_001972"
     CDS             705..1214
                     /locus_tag="WHR98_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003662333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxyl methyltransferase
                     family protein"
                     /protein_id="HEZ2308591.1"
                     /translation="MTMILSILSLFFIIRLLFLAVSIKHEKALIAKGAKQYGKTNSTL
                     LAAVHTLYYLACFVWVWLSDTAFNGISLIGTLTVMASFVILSLIIKQLGEIWTVKIYI
                     LPNHQINRSWLFKTFRHPNYFLNIIPELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQ
                     EEQAMATLF"
BASE COUNT          334 a          238 c          309 g          388 t
ORIGIN      
        1 gccttgtttt gacggaaaac catcatataa aggaacactt atgcagattt tatcttttca
       61 gccggacatt gcggaacgta tgctggaagg tacggaagga gagtcggttc atcgggatgc
      121 gcagttcgtt caaacggcaa acggctattg gattgcgtgg catgaaggcg tagcggcact
      181 gcttgcgccc gatacgccgc cggggattcc ctgtttttgg gtggaaggcg cggaaagcct
      241 tgaagagttg tgcgtcatgg tggaacgcgg cgagtttgac gaagtggaag agtttgacgg
      301 cgatgacgac gaatggctcg aaacggcaca gggttgcggg caccacggcg acgcttgcgc
      361 ctgcggacat taaaggcatt gcaggcttgc cgcaaggggg gcaaggcttt gccgtttttt
      421 aaataatcgg tggattgcat ctgtttgcaa tgggcggaac gcttcccttt gtattttatt
      481 gaataaaaaa acttatcttg gtattataat taaggcatca tcaattattt tgggatggca
      541 ataaacgcaa agcattgatt tgcgccgatt gcagacttat tatagcaggt tgcggcgcgg
      601 acttaatggg aattgtttat agagcatgat ggtctgaaac atcattaatt aaaaatacca
      661 ttaatccgat ttatatttat ttcaatttca atggaaaaac atcaatgaca atgattttaa
      721 gcattttaag cctgtttttt atcatcagac tgttattttt agccgtctct attaaacatg
      781 aaaaagcctt gattgccaaa ggggcgaaac aatacggaaa aaccaattcc acgctgcttg
      841 cggcagttca tacgctttat tatttggcgt gttttgtttg ggtatggctt tctgacactg
      901 cttttaatgg catatccttg attggtacgc tgacggtgat ggcttcgttt gtgatattgt
      961 cattgattat taagcagttg ggggagattt ggacggttaa aatctatatt ttaccaaatc
     1021 atcaaattaa tcgttcgtgg ttgtttaaaa cattccgcca ccccaattat tttttaaaca
     1081 tcatacccga actgattggc atcgccttat tatgtcaagc gtggtatgtt ttattgattg
     1141 gcctgccgat ttatttgctg gtcttattta agcgtatccg acaagaagaa caggcgatgg
     1201 caacactttt ttaacccgtt tcatcaatta tagcggatta acaaaaacca gtacggcgtt
     1261 gcctcgcct
//
LOCUS       DAWGNT010000245         1268 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.245, whole genome shotgun sequence.
ACCESSION   DAWGNT010000245 DAWGNT010000000
VERSION     DAWGNT010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.245"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..>1268
                     /locus_tag="WHR98_001973"
     CDS             <1..>1268
                     /locus_tag="WHR98_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308592.1"
                     /translation="LLVRDLNGNGIIDNGAELFGDNTKLADGSFAKHGYAALAELDSN
                     GDNIINAADAAFQSLRVWQDLNQDGISQANELRTLEELGIQSLDLAYKDVNKNLGNGN
                     TLAQQGSYTKTDGTTAKMGDLLLAADNLHSRFKDKVELTAEQAKAANLAGIGRLRDLR
                     EAAALSGDLANMLKAYSAAETKEAQLALLDNLIHKWAETDSNWGKKSPMRLSTDWTQT
                     ANEGIALTPSQVAQLKKNALVSLSDKAKAAIDAARDRIAVLDAYTGQDSSTLYYMSEE
                     DALNIVKVTNDTYDHLAKNIYQNLLFQTRLQPYLNQISFKMENDTFTLDFSGLVQAFN
                     HVKETNPQKAFVDLAEMLAYGELRSWYEGRRLMADYVEEAKKAGKFEDYQKVLGQETV
                     ALLAKTSGTQADDILQNVGFGHNKNVSLYG"
BASE COUNT          387 a          295 c          286 g          300 t
ORIGIN      
        1 ttactcgtcc gcgatttgaa cggcaacggc atcatcgaca acggtgcgga actcttcggc
       61 gacaacacca aactggcaga cggttctttt gccaaacacg gctacgcggc tttggccgaa
      121 ttggattcaa acggcgacaa catcatcaac gcggcagacg ccgcattcca atccctgcgt
      181 gtatggcagg atctcaacca ggacggcatt tcccaagcta atgaattgcg tacccttgaa
      241 gaattgggta tccaatcttt ggatctcgcc tataaagatg taaataaaaa tctcggtaac
      301 ggtaacactt tggctcagca aggcagctat accaaaacag acggtacaac cgcaaaaatg
      361 ggggatttac ttttagcagc cgacaatctg cacagccgct tcaaagacaa agtggaactc
      421 actgccgaac aggcaaaagc cgccaatctt gcgggcattg gtcgtctgcg cgatttgcgc
      481 gaagctgccg cattgtccgg cgatttggcc aatatgctga aagcttattc tgccgccgaa
      541 actaaagaag cacagttggc attgttagat aatttgattc acaaatgggc ggaaaccgat
      601 tcgaactggg gcaaaaaatc gccaatgcga ctttcaaccg attggacgca aacggctaat
      661 gaaggtattg cactgacacc atcccaagta gcacaactaa aaaagaacgc tttagtttcc
      721 ctttctgata aagctaaagc agctattgac gccgcccgcg accgcattgc cgtgcttgat
      781 gcctacacgg ggcaggattc cagcacactc tattacatga gcgaagaaga cgcgcttaat
      841 atcgtcaaag taaccaacga tacatacgac catctcgcca aaaacatcta ccaaaacctg
      901 ttattccaaa cccgtttgca gccatatttg aatcaaatca gtttcaaaat ggaaaatgat
      961 acgttcactt tggattttag tggtcttgtt caagcattta accatgtcaa agaaactaat
     1021 ccgcaaaaag cttttgtgga tttggccgag atgcttgcat atggcgaact tcgttcttgg
     1081 tatgaaggcc gaagactaat ggccgattat gtggaggagg caaaaaaagc aggtaaattt
     1141 gaagattacc agaaagtgtt gggtcaggag accgttgcat tattagctaa aacatcgggt
     1201 acgcaagcag atgatatcct gcaaaatgta ggctttggtc ataataaaaa tgtttcttta
     1261 tatggtaa
//
LOCUS       DAWGNT010000246         1253 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.246, whole genome shotgun sequence.
ACCESSION   DAWGNT010000246 DAWGNT010000000
VERSION     DAWGNT010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.246"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            236..1189
                     /locus_tag="WHR98_001974"
     CDS             236..1189
                     /locus_tag="WHR98_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HEZ2308593.1"
                     /translation="MGFLIGLSRNLTRFTALVILLASAVAFIGPASFAWVKGDVQVLV
                     LGIIMLGMGMTLGREDYRILAQRPLDVFIGAAAQYTVMPLLAIGIAKLFDLSPGLTLG
                     LVLVGTCPGGVSSNIMSFLAKGDVAFSVGMTTVSTVLAPAVTPLWMTCLVGQTVDMDG
                     WGMFRFMLLVTLLPVVLGSAANILLHGKHWFENVRAVMPGVAVLAFACIVGGVASVHG
                     HRFAESALVMVLAIAVHNIAGYVSGYYAAALFGMDTAKKRTLAIEVGVQNAGLATGLS
                     AKFFPGNPESAVAAAVACVWHSVSGTVLGNLFALWDKRRDA"
BASE COUNT          200 a          272 c          432 g          349 t
ORIGIN      
        1 aaaccggatg attcgggcta aataattcct gattctttgg atatagccaa cggtatgcct
       61 gccgatgccg tcagaaaggg cttgatgggc gtttgcggtt cgggttaata tttgtgctgt
      121 atctgttaat tccggttagt aaaatggggc ggggacgatg agtggccgtc ggtcggtttt
      181 gcacgggcgg taataatgtc cggcgcaagg tgcgccgttt cgggaggggt gtgtgatggg
      241 ttttctgatt ggtttgagcc gcaacctgac gcggtttacg gctttggtca ttttgcttgc
      301 gtcggcggtt gcgtttatcg gaccggcttc gtttgcgtgg gttaagggcg atgttcaggt
      361 cttggtgctg ggcatcatta tgctgggtat ggggatgact ttgggcaggg aggactaccg
      421 gattttggcg cagcgtcctt tggatgtgtt tatcggtgcg gcggcgcaat ataccgtgat
      481 gccgttgctc gccatcggta ttgccaagct gttcgacctt tcgccggggc tgactttggg
      541 gctggtgttg gtggggacgt gtccgggcgg cgtgtcgtcc aacattatga gtttccttgc
      601 caaaggcgat gtggcgtttt cagtcggtat gacgacggtg tctacggtgc tggctccggc
      661 cgttacgcct ttgtggatga cctgcctggt cggtcagacg gtggatatgg acggttgggg
      721 gatgttccgg tttatgctgc tggtcacgct tttgccggtg gtgctgggtt cggcggcaaa
      781 tatcctgctg cacggaaaac attggtttga aaatgtccgt gccgttatgc cgggcgtggc
      841 ggtattggca tttgcctgca ttgtcggcgg cgtggcttcg gttcacggac accgttttgc
      901 cgaatcggcg ttggtaatgg tgttggcgat tgcggtacac aatatcgccg gctatgtgtc
      961 aggctattac gccgccgcgc tgtttggtat ggatacggca aaaaaacgca ccttggcaat
     1021 cgaagtcggc gtgcagaatg ccggtttggc aacaggattg agcgcgaaat ttttcccagg
     1081 caaccccgaa tcggcggttg cggcggcggt cgcctgcgtg tggcattcgg tttcggggac
     1141 ggtattgggc aacttgttcg ctctgtggga caagcgtcgg gacgcttagt cgggcgtgtc
     1201 cgaaccgtcc cacgatatat agtggattaa ctttaaaccg gtacggcgtt gcc
//
LOCUS       DAWGNT010000247         1234 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.247, whole genome shotgun sequence.
ACCESSION   DAWGNT010000247 DAWGNT010000000
VERSION     DAWGNT010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1234
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.247"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..>1234
                     /locus_tag="WHR98_001975"
     CDS             <1..>1234
                     /locus_tag="WHR98_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF637 domain-containing protein"
                     /protein_id="HEZ2308594.1"
                     /translation="SKQPEYAYLKQLQTAKNVDWKQVQLAYDKWDYKQEGLTGAGAAI
                     VVIIVTALTYGYGAAAAGSVTAAGSSTAAAATTTAAATTTVSTAAAMQTAALASLYSQ
                     AAVAIINNKGDVGKALKDLGTSDTVKQIVTSALTAGALNQMGADIAQLNSKVRTELFS
                     STGNQTIANLGGRLATNLSNAGISAGINTAVNGGSLKDNLGNAALGALVNSFQGEAAS
                     KIKTTFSDDYVAKQFAHALAGCVSGLVQGKCKDGAIGAAVGEIVAESILGGRNPATLS
                     DAEKHKVISYSKIIAGSVAALNGGDVNTAANAAEVAVVNNALNFDSTPTNAKKHQPQK
                     PDKTALEKIIQSIMPAHAAGAMTNPQDKDAAIWISNIRNGITGPIVITSYGVYAAGWT
                     APLIGTAGKLAISTCMANP"
BASE COUNT          358 a          298 c          327 g          251 t
ORIGIN      
        1 tgtccaaaca gcccgaatac gcctacctga aacagcttca gacggccaag aacgtcgatt
       61 ggaaacaggt gcagctggcc tacgacaaat gggactataa acaggaaggc ttgaccggag
      121 ccggtgcagc gattgtggtg attattgtaa ccgctctaac ttatggatac ggagcggctg
      181 cagcgggtag cgtaactgcc gcaggaagta gtacagccgc agctgcaaca acgacagcgg
      241 cagcaactac cactgtttct actgcagctg ccatgcaaac cgcagcttta gcctccttgt
      301 atagccaagc agctgtagcc atcatcaata ataaaggcga tgtaggcaaa gcattaaaag
      361 atctcggcac cagtgatacg gtcaagcaga ttgttacttc cgcactgacg gcgggtgcat
      421 taaaccagat gggagcagat attgcccaat tgaacagcaa ggtaagaacc gaactgttca
      481 gcagtacggg caatcaaacc attgccaacc ttggaggcag attggccacc aacctcagca
      541 atgcaggtat ctcagctggt atcaataccg ccgttaacgg cggcagcttg aaagacaact
      601 taggcaatgc cgcattggga gcattggtta atagcttcca aggggaagcc gccagcaaaa
      661 tcaaaacaac cttcagcgac gattatgttg ccaaacagtt cgcccacgct ttggcgggtt
      721 gtgttagcgg actggtacag ggaaaatgta aagatggggc aattggcgca gcagttgggg
      781 aaatcgtagc tgaatccata cttggcggca gaaaccctgc tacactcagc gatgcagaaa
      841 agcataaagt tatcagttac tcgaagatta ttgcgggcag cgtggcggca ctcaacggcg
      901 gcgatgtgaa tactgcggcg aatgcggctg aggtagctgt ggtgaataat gctttgaatt
      961 ttgacagcac ccctaccaat gcgaaaaagc atcaaccgca gaagcccgac aaaaccgcac
     1021 tggaaaaaat catccaaagt attatgcctg cacatgcggc aggtgcgatg actaatccgc
     1081 aggataagga tgctgccatt tggataagca atatccgtaa tggcatcaca ggcccgattg
     1141 tgattaccag ctatggagtt tatgctgcag gttggacagc tccgctgatc ggtacagcgg
     1201 gtaaattagc tatcagcacc tgcatggcta atcc
//
LOCUS       DAWGNT010000248         1138 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.248, whole genome shotgun sequence.
ACCESSION   DAWGNT010000248 DAWGNT010000000
VERSION     DAWGNT010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.248"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..154
                     /locus_tag="WHR98_001976"
     CDS             <1..154
                     /locus_tag="WHR98_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FrpC operon protein"
                     /protein_id="HEZ2308595.1"
                     /translation="TGVGSCINGFPVRYYPFIREKQQLTQQELVGYHQQVEQLVQSFV
                     NNPSKK"
     gene            171..>1138
                     /locus_tag="WHR98_001977"
     CDS             171..>1138
                     /locus_tag="WHR98_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308596.1"
                     /translation="MNEGEVVLTPEQIQTLYGYAFRGDTYGGWRYLANLGDRYADDAA
                     AIVGKDANLNGLNLWMKKGVENLWDDTVGKKTRLEKFDRVALQHFSQYVDLINENNGR
                     LPNTSEIERSYYKAVTYHGVSSSAAIDLVINRSLPDMADGYWALGLGIEAERIHNEQA
                     VNNPNGSESDNRKQLISALDKGFDGSFKEKPFTFLQSVIMDVTKLGVEYTIDGWQKIG
                     GWGNGIINDLYKSVAKREWTGIFEIVNNNIKQFRDLFPNPEGWIDDGHQCFAPWVKET
                     KKRNGKYHVYDPLALDLDGDGIETVATKGFAGSLFDHTNNGIRTATG"
BASE COUNT          360 a          184 c          271 g          323 t
ORIGIN      
        1 cactggcgta ggttcctgta ttaacggttt cccggtacgg tattacccgt ttattcggga
       61 aaagcagcag ctcacacagc aggagttggt aggttatcac caacaagtag agcaattggt
      121 acagagtttt gtaaacaatc caagtaaaaa ataatttaaa ggatcttatt atgaatgagg
      181 gtgaagttgt tttaacacca gaacaaatcc aaaccttgta tggttatgct ttccgtggcg
      241 atacctatgg cggttggcgt tatttggcta atttgggtga ccgttatgcg gatgatgctg
      301 ctgcaattgt cggtaaggat gcaaacttaa atggtttgaa tttatggatg aaaaaagggg
      361 tggaaaacct atgggatgat acggtcggta aaaagacccg tttagagaaa tttgatcggg
      421 ttgcattgca acatttcagc caatatgtag atctaattaa tgaaaataat ggtagattac
      481 ctaacactag tgaaattgag agaagttact ataaagccgt tacctatcat ggcgtttctt
      541 ctagtgcagc tattgattta gttattaatc gttcacttcc ggatatggcg gatggttatt
      601 gggcattagg tttggggata gaagccgaac gtatccacaa tgagcaagca gtaaataatc
      661 cgaacggtag cgaatcggat aatagaaagc agttaatatc tgctttagat aaaggatttg
      721 atggatcttt taaagagaag ccttttactt ttttacaatc tgtgataatg gatgtaacaa
      781 agttaggtgt tgaatataca atagatggtt ggcaaaaaat tggaggttgg ggtaatggga
      841 taatcaatga tttatataaa agtgttgcaa aaagagagtg gactggaata tttgagatcg
      901 ttaataataa catcaagcaa tttagagatc tgttcccaaa tccggaaggc tggatcgatg
      961 atggtcacca atgtttcgct ccttgggtta aagaaactaa aaaacgcaat ggcaaatatc
     1021 atgtctacga ccccctcgcc ctagatttgg acggagacgg tatagaaacc gttgccacca
     1081 aaggctttgc aggcagctta tttgatcaca ccaacaacgg tatccgcacc gccaccgg
//
LOCUS       DAWGNT010000249         1134 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.249, whole genome shotgun sequence.
ACCESSION   DAWGNT010000249 DAWGNT010000000
VERSION     DAWGNT010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.249"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(241..1095)
                     /locus_tag="WHR98_001978"
     CDS             complement(241..1095)
                     /locus_tag="WHR98_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003711118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEZ2308597.1"
                     /translation="MFYQILALIIWSSSFIAAKYVYGGIDPALMVGVRLLIAALPALP
                     ACRRHVGKIPREEWKPLLIVSFVNYVLTLLLQFVGLKYTSAASASVIVGLEPLLMVFV
                     GHFFFNDKARAYHWICGAAAFAGVALLMAGGAEEGGEVGWFGCLLVLLAGAGFCAAMR
                     PTQRLIARIGAPAFTSVSIAAASLMCLPFSLALAQSYTVDWSVGMVLSLLYLGVGCGW
                     YAYWLWNKGMSRVPANVSGLLISLEPVVGVLLAVLILGEHLSPVSALGVFVVIAATLV
                     AGRLSHQK"
BASE COUNT          315 a          342 c          294 g          183 t
ORIGIN      
        1 cactataaaa tcccgtcatt cccgcgcagg cgggaatccg gacatccaac gctgcagcaa
       61 tttgtcggaa ataaccgaaa ctcaaaaaac cggatgcccg cctgcgcggg aatgacgatg
      121 caaagatggt cgttatttcg gataaatatc cgtcttttcg ttccggatac ccgctttcgc
      181 aggaatggag atggaaagat ttcagcctat tcggcaatca tcaaataccg cttcccaact
      241 ttatttttga tgcgacagcc ggccggcaac caaggtggcg gcgatgacga caaacacgcc
      301 caaggcggac acgggcgaca ggtgttcgcc caaaatcaaa accgccagca gcacgccgac
      361 gacgggttcg agcgaaatca acagtcccga cacgttggca ggaacacggc tcatcccctt
      421 gttccacagc caataggcgt accagccgca ccccacgccc aaatacagca gcgacaatac
      481 cattccgacg ctccagtcca cggtataact ttgcgccaaa gcaagcgaaa acggcaggca
      541 catcaacgat gcggcggcaa tggaaacaga tgtgaatgcc ggtgcgccga tgcgtgcaat
      601 cagcctttgc gtcggacgca tagcggcaca aaagcccgcg cccgccaaca acaccagcag
      661 gcagccgaac cagccgactt cgccgccctc ttccgcaccg cccgccatca gcagcgcgac
      721 accggcaaat gccgccgcgc cgcatatcca gtggtaggca cgcgctttgt cgttgaagaa
      781 aaagtgtccg acaaacacca tcagcagcgg ctcgagtccg acaatgaccg atgcgctggc
      841 ggcggaagtg tatttcaacc cgacaaactg aagcagcagg gtcagcacat agttgacgaa
      901 cgacacaatc agcaacggct tccattcctc acgcggaatc ttgccgacat gacggcggca
      961 ggcgggcagt gcaggcagcg cagcaatcag caggcgcacg ccgaccatca atgcgggatc
     1021 gatgccgcca tagacatatt tggcggcaat aaacgagctg ctccagataa tcagggcaag
     1081 gatttggtaa aacatagtga gtgataaagt cagatggtca tacaaaagta tagc
//
LOCUS       DAWGNT010000250         1112 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.250, whole genome shotgun sequence.
ACCESSION   DAWGNT010000250 DAWGNT010000000
VERSION     DAWGNT010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.250"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            153..1052
                     /locus_tag="WHR98_001979"
     CDS             153..1052
                     /locus_tag="WHR98_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014580527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEZ2308598.1"
                     /translation="MGKGGDIVVGNGKKYAAPLLVLGCVVFGLGSLIVRSVPVGSYAI
                     AFWRLLISVFVFWFLARFFGQKFPKNRKTVRYALTAGVFLAFDLALWHESIHAVGPGI
                     STLLNSLQIFFLSAIGVFFFGERLSGLKKAGLISAVAGVAMIAGAEFGYNGNAVWGFA
                     SGLVSGLMLALSMVFVRKTHEIEPVALFPSMMILSLGGAVSLVVPALLMDGGVLYPTT
                     WKDAGLVLVYGVVMQCFAWAMVAYAIPLLSLSLTGLLLLSEPVAALFIDYFGLGKPIE
                     GVQWAGVALTLSAIYLGSLKQQS"
BASE COUNT          187 a          256 c          355 g          314 t
ORIGIN      
        1 gggttttatc cggcaggacg gttttttgcc ccaacggaaa atagcctgcc tgcccgtaaa
       61 atcagccgtt tgtccgggtg cagccggggc tttgggcttc agacggcata ttttcggaat
      121 ggcggcattc ttgccgtcgg cgcggcagcc gtatggggaa gggaggggat attgtggtcg
      181 gtaacggcaa aaaatatgcc gcaccattgc tggtgctggg ttgcgtggtg ttcggtctgg
      241 gcagtctgat tgtcagatcc gtccccgtcg gttcgtatgc aatcgcattt tggcggttgc
      301 tgatttcggt gttcgtattt tggtttttag cacggttttt cgggcaaaaa ttcccaaaaa
      361 acaggaaaac cgtccgatat gccctgacgg cgggcgtgtt tctcgctttc gatttggcgt
      421 tgtggcacga aagcatacac gcggtcgggc cgggtatttc caccctgctc aacagcctgc
      481 aaatcttttt cttgtcggca atcggtgttt tctttttcgg cgagcgtttg agcgggctga
      541 aaaaggcagg cttaatatcg gcagttgccg gcgtggcgat gattgccggt gcggaattcg
      601 gctacaacgg taatgcggtt tggggattcg ccagcggttt ggtatcggga ctgatgctcg
      661 ccctgtcgat ggtgttcgtc cgcaaaaccc atgaaatcga gccggtggcg cttttccctt
      721 caatgatgat tttgagtttg ggcggcgcgg tatcgctggt tgttccggca ttgctgatgg
      781 atggcggcgt gctttatccg acgacttgga aagatgcggg tttggtgctt gtgtacggcg
      841 tggtgatgca gtgcttcgcg tgggcgatgg ttgcctatgc gattccgctg ctttcgctgt
      901 cgctgacggg gctgctgctt ttgtccgaac cggttgccgc cctgttcatc gattatttcg
      961 ggttgggcaa accgattgaa ggcgtgcagt gggcaggggt ggcgctgacg ctttcggcaa
     1021 tttacctcgg ttcgctgaaa cagcagtctt aatattgatt ccatcaaggc agtattggca
     1081 gttttccgtg caaaacctgc gttaccggac tg
//
LOCUS       DAWGNT010000251         1073 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.251, whole genome shotgun sequence.
ACCESSION   DAWGNT010000251 DAWGNT010000000
VERSION     DAWGNT010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1073)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.251"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(122..550)
                     /locus_tag="WHR98_001980"
     CDS             complement(122..550)
                     /locus_tag="WHR98_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002250891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mor transcription activator family protein"
                     /protein_id="HEZ2308599.1"
                     /translation="MGFEKVEHLLPDTVLDIVDVIGLAATEQLVKAIGGARFKFGKGK
                     VDTERLAILVEAIGEVKTHELLQVYGGEELYVPRCGKALIQLRNHRFYQEFVKLRDID
                     KESGLMAMTKLCPKYGISSRTGYTIINEMSRPAAQQAALF"
     gene            complement(531..965)
                     /locus_tag="WHR98_001981"
     CDS             complement(531..965)
                     /locus_tag="WHR98_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gp16 family protein"
                     /protein_id="HEZ2308600.1"
                     /translation="MRRALIAKIKIAQKELGLDDGTYRAVLERVTGKRSCADMDVSEL
                     ESVVADMRSHGFKPKAKGNPHGKPHLRRTSSAAMLDKVEALLTVGGKHWNYAHAMARR
                     MFGKDKVEYLDDTQLHKLVAALQIAENRKTEKAGGDDGVRKS"
BASE COUNT          278 a          320 c          196 g          279 t
ORIGIN      
        1 ttgaaaaccc cattaaaccg tctttaaccc atcgtcccga acggtagatg tttcatcccc
       61 tgcgaaccaa aaaaaagacc gtctgaatac agacggccaa agcctggtca cacatcactg
      121 cctaaaataa agctgcctgc tgtgccgcag gtcggctcat ttcattgata atcgtatatc
      181 ccgttcgtga agagatgccg tatttagggc atagcttcgt catcgccata agcccgctct
      241 ccttatcaat atcgcgcaat ttgacaaact cctgataaaa cctatggttt ctcaactgta
      301 ttaacgcctt gccgcaccgt gggacataca attcctcgcc accatatacc tgcaacagct
      361 catgtgtttt cacttcgccg atggcttcga ccaaaattgc caaacgctcg gtgtccacct
      421 tgcccttacc aaatttaaac cgcgccccgc caatcgcctt gaccagctgt tccgtcgctg
      481 ccagtccgat gacatccaca atgtccaaca cggtatccgg caataaatgt tcaacttttt
      541 cgaaccccat catccccacc cgctttttcc gttttcctgt tttccgcaat ctgcaacgca
      601 gcaaccagtt tatgtagctg cgtatcgtct aaatattcga ccttatcctt accaaacatc
      661 cgccgcgcca ttgcgtgtgc atagttccaa tgtttgccgc cgacggtcag cagggcttcg
      721 actttgtcca acattgccgc tgatgatgtc cgacgcagat gtggtttacc gtgtgggtta
      781 ccttttgctt taggcttaaa tccgtgcgac cgcatatcag cgacaacaga ctcaagttcg
      841 gaaacatcca tatccgcaca cgaccgcttg cccgtcacgc gctccaacac cgcgcgatag
      901 gtaccgtcgt ccaagcccag ctccttttgg gcaattttaa tttttgcaat caacgcccgg
      961 cgcatctcaa acccataaaa cacaatatat tgactaatta acgcatatta taccaataaa
     1021 atacaatata tagtattaag ccgatgtttt ttgcgaaacg gacagacatg aaa
//
LOCUS       DAWGNT010000252         1049 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.252, whole genome shotgun sequence.
ACCESSION   DAWGNT010000252 DAWGNT010000000
VERSION     DAWGNT010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.252"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(30..221)
                     /locus_tag="WHR98_001982"
     CDS             complement(30..221)
                     /locus_tag="WHR98_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002232733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308601.1"
                     /translation="MDFQFFVETIRRQEKKLKHGVYRLFEIYSWLEDGKATKARIRYF
                     VKIEVDKQILRRIHRGIAD"
     gene            350..910
                     /locus_tag="WHR98_001983"
     CDS             350..910
                     /locus_tag="WHR98_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA large subunit pseudouridine synthase E"
                     /protein_id="HEZ2308602.1"
                     /translation="MKNLIAFNKPYGVICQFSPHEKHKSLKDFINFPGFYPAGRLDTD
                     SEGLLLLTDDGRLQAQITDPKFKHPKTYWAQLEGVPDESRLESLRKGIDLGGFVTRPA
                     SIRILKHGEADSLWERIPPIRVRKTVPDFWIEITISEGKNRQVRRMTAKAGYPCLRLI
                     RVASGRLKLFDLDLKPGEWAYAPFKP"
BASE COUNT          303 a          288 c          213 g          245 t
ORIGIN      
        1 aaggcgagac aacgacgtac cggtttttgt taatccgcta taccacgatg aatccttcgc
       61 aatatctgtt tatcgacctc aattttgaca aaataccgga tacgcgcctt tgttgctttt
      121 ccatcttcca accaactgta aatctcaaac agccggtaca cgccatgctt cagtttcttt
      181 tcctgtcggc ggattgtttc gacaaagaat tgaaaatcca tttcatgcac cttaaaattt
      241 aatctgcatt caaacctttt cactttggaa gcaccattta tcggatgtcc cttcgcaata
      301 aacaaatttt cccgataccg ccgcccattt caacccaaac ccaaaaccta tgaaaaacct
      361 catcgccttc aacaaaccct atggcgttat ctgccaattt tcaccgcacg aaaaacacaa
      421 aagcctcaaa gactttatca attttcccgg cttctacccc gccggacggc tcgacaccga
      481 cagcgagggg ctgctgctgc tgaccgacga cggcaggctt caggcacaaa ttaccgaccc
      541 caaattcaaa caccctaaaa cctactgggc gcaactggag ggcgtacccg acgaaagccg
      601 attggaaagc ctaagaaaag ggatagactt aggcggtttc gttacccgtc cggcaagcat
      661 ccgcatcttg aaacacggag aagcagattc gttatgggag cgcatcccgc cgatacgcgt
      721 ccgcaaaacc gttcccgatt tttggattga aattaccatt tctgagggca aaaaccgcca
      781 agtcaggcga atgaccgcca aggcgggcta tccctgcctg cgtctgatca gagtggcaag
      841 cggcaggctg aaactgtttg atttggattt aaaacccggg gaatgggcat acgccccgtt
      901 taaaccataa tcacgtttat ctcatcattt ccacaaaagt gggaatccgg aattttatag
      961 tggattaaca aaaatcagga caaggcgacg aagccgcaga cagtacaaat agtacgaaac
     1021 cgattcactc ggtgcttcag caccttaga
//
LOCUS       DAWGNT010000253         1048 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.253, whole genome shotgun sequence.
ACCESSION   DAWGNT010000253 DAWGNT010000000
VERSION     DAWGNT010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.253"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     repeat_region   457..1020
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=523..558
                     /rpt_unit_seq="gttgtagctcccattctcatttcgcagtgctacaat"
BASE COUNT          271 a          234 c          217 g          326 t
ORIGIN      
        1 tgaaagaagg tgctcatgag aaatccccta aatgtcttgg tgggaattta ggggattttg
       61 gggaattttg caaaggtctc attttgcaag attttagttt aatcatcaaa cagggaacag
      121 caaaaatccc cgctgcaacg gggatttttg ttcggctctc gcctgtgtga ttaacttcac
      181 taggagaagc taaaatgctt aaattcctta tgcgtgggaa aaagttgctg ctgtccgttg
      241 aagtgaacca caagttcatt ttagcggttg ctttgctgtt aagtcaatgc agtagctaac
      301 ccgaccacaa tcaaaaaaac gcaagttttc cgcctactct gtgagtgggc ggttttttct
      361 tatttcaaat ctgtgacaca atatctgtcg cctttcttgc cataattgca ctgtgtctca
      421 atgactttaa cgcacgttcg cttatcgcaa cggctggttg tagcgcccat tctcatttcg
      481 cagtgctaca atggacggcg gttctaaaat atgaaaactc aagttgtagc tcccattctc
      541 atttcgcagt gctacaatta tcatgatgag catatttatg aagaggtagt tgtagctccc
      601 attctcattt cgcagtgcta caatctggaa gactggtaag aaacgagatg cacagttgta
      661 gctcccattc tcatttcgca gtgctacaat cgatttacca cccataaaac cacctcaaaa
      721 gttgtagctc ccattctcat ttcgcagtgc tacaattaat ttgcgtttcg tgtcgctcat
      781 aaacccgttg tagctcccat tctcatttcg cagtgctaca atcgtaaccg gcaaggctta
      841 tttgtccaac gagttgtagc tcccattctc atttcgcagt gctacaatat atcgtactct
      901 tttacgttat taacaaatgt tgtagctccc attctcattt cgcagtgcta caatctgaaa
      961 ggtaaggaac gggcggcttg tgaggttgta gctcccattc tcatttcgca gtgctacaat
     1021 gagcatctat taggggtgaa ggtagatc
//
LOCUS       DAWGNT010000254          951 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.254, whole genome shotgun sequence.
ACCESSION   DAWGNT010000254 DAWGNT010000000
VERSION     DAWGNT010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.254"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            57..782
                     /locus_tag="WHR98_001984"
     CDS             57..782
                     /locus_tag="WHR98_001984"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003712687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEZ2308603.1"
                     /translation="MPRFHLPENLSVGQTVALPDNIVRHLNVLRVRPNENITLFDGKG
                     KAHAARLTVLEKRRAEAEILHEDTTDNESPLNITLIQSISSGERMDFTLQKSVELGVT
                     AIQPVISERCIVRLDGERAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYREALDKM
                     PSESTKLIMSINRARKLGDIRQPSGAIVFMVGPEGGWTEQEEQQAFDAGFQAVTLGKR
                     ILRTETAPLAALAAMQTLWGDFA"
BASE COUNT          250 a          328 c          214 g          159 t
ORIGIN      
        1 gtccgtttcc atcacgccgc tgcgacagat tataaccgtc cgaaccgcca aaaactatgc
       61 cccgattcca cctgcccgaa aacctttccg tcggacaaac cgtcgcccta cccgacaaca
      121 tcgtccgcca cctcaacgtc ctgcgcgtcc gccccaacga aaacatcacc ctcttcgacg
      181 gcaaaggcaa ggcacacgcc gcacggctga ccgttttgga aaaacgccgc gccgaagccg
      241 aaatcctgca cgaagacaca accgacaacg agtccccgct caacatcaca ctgatacaat
      301 ccatctcctc cggcgaacgt atggacttta ccctgcaaaa aagcgtcgaa ctcggcgtaa
      361 ccgccataca gcccgtcatc agcgaacgct gcatcgtccg cctcgacggg gaacgcgccg
      421 ccaaacgcct cgcacgctgg caggaaatcg tcatctccgc gtgcgaacaa agcggcagga
      481 acaccgttcc ccccgtactg cccatcatcg gctaccgtga agcactcgac aaaatgccgt
      541 ctgaaagcac caagctgatt atgagcatca accgcgcccg caaactcggc gacatccgcc
      601 aaccgtccgg cgcaatcgtc tttatggtcg ggcctgaagg cggctggaca gaacaggaag
      661 aacaacaggc atttgatgcc ggctttcagg cggttacact cggcaaacgg attttacgca
      721 cagaaaccgc cccactcgcc gccctcgccg ccatgcagac gctttggggc gatttcgcat
      781 aaacagaaat gccgtctgaa acccgttcag acggcatttt gcagccgatt aagatagtag
      841 gttcaaataa gatttcccgt gtcgtcattc ccgcgaaagc gggaatctag aaacgaaaaa
      901 ctacagggat ttatccgaaa caacaaccct ctccgccgtc attcccgcgc a
//
LOCUS       DAWGNT010000255          927 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.255, whole genome shotgun sequence.
ACCESSION   DAWGNT010000255 DAWGNT010000000
VERSION     DAWGNT010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.255"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(10..576)
                     /locus_tag="WHR98_001985"
     CDS             complement(10..576)
                     /locus_tag="WHR98_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HEZ2308604.1"
                     /translation="MGFYALLLIALGMSMDAFAVALAKGAAVRMPPRKIAATALVFGT
                     VEALTPLAGWVGGFYAKPFISEWDHWAAFVLLGGLGLKMLREGLSGGADDVREAKRES
                     WWLTVLTAFGTSIDSMIVGVGLAFMEVNIAFAAAVIGMATTVMVTVGLTAGRALGVLF
                     GKRAEFAGGLVLIAIGTWTLLSHLGLIQ"
BASE COUNT          257 a          294 c          201 g          175 t
ORIGIN      
        1 tttccgacat cattgaatca aacccaaatg cgacaagagc gtccatgtac cgatggcaat
       61 caacaccaaa cctccggcaa actcggcgcg tttgccgaac aatacgccca aagcccttcc
      121 cgccgtcagc ccgaccgtaa ccatcaccgt cgtcgccatg ccgatgacgg cggcggcaaa
      181 ggcgatgttt acctccataa acgccaagcc caccccgact atcatggaat caatactggt
      241 tccaaaagca gtcagaaccg tcaaccacca gctttcccgt ttggcttcgc gcacatcgtc
      301 cgccccgccg gacaagccct cacgcaacat cttcagaccc agcccgccca gcaggacgaa
      361 agccgcccaa tggtcccatt cgctgataaa cggcttggca taaaaaccgc ccacccagcc
      421 tgccagcggc gtgagcgctt caaccgtgcc gaacaccaaa gccgttgccg caattttgcg
      481 cggaggcatt ctgaccgccg caccctttgc caatgcgacg gcaaacgcat ccatcgacat
      541 ccccagcgca atcaagagca aagcataaaa acccataccg cacccgtcct caaaaagggc
      601 ggattatagc aaaagcaaaa aaatgcaaaa acgccgcacg aaaacccaca tcccgtcatt
      661 cctgcaaaaa caaaaaatca aaaacagaaa tcccgtcatt cccgcgcagg cgggaatcca
      721 gagttgtcgg tgcggaaact tatcgggaaa aacggtttct ttagatttta cgttctagat
      781 tcccactttc gtgggaatga cgggatgtag gtttccgtgc ggatggattc gtcattcccg
      841 cgcaggcggg aatccaaagt tgtcggtgca gaaacttatt ggataaaacg gtttctttag
      901 attttacgtt ctagattccc gctttcg
//
LOCUS       DAWGNT010000256          922 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.256, whole genome shotgun sequence.
ACCESSION   DAWGNT010000256 DAWGNT010000000
VERSION     DAWGNT010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.256"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(105..737)
                     /gene="mtrR"
                     /locus_tag="WHR98_001986"
     CDS             complement(105..737)
                     /gene="mtrR"
                     /locus_tag="WHR98_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012503796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     repressor MtrR"
                     /protein_id="HEZ2308605.1"
                     /translation="MRKTKTEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTR
                     GALYWHFKNKEDLFDALFQRICDDIENCIAQDAEDAEGGSWAVFRHTLLHFFERLQSN
                     DIYYKFHNILFLKCEHTEQNAAVIAIARKHQAIWREKITAVLTEAVENQDLADDLDKE
                     TAVIFIKSTLDGLIWRWFSSCERFDLGKTAPRIIGIMMDNLENHPDLRRK"
BASE COUNT          208 a          205 c          240 g          269 t
ORIGIN      
        1 attgcaaagg tctcaatatg tatttttaga agaaggcttt gtgtcatttt gatgccgtct
       61 gaaagggttt gttcgtttca gacggcattg ctaccaaggc ttgattattt ccggcgcagg
      121 tcgggatggt tttccaagtt gtccatcatt atcccgatga tgcgcggggc ggttttgccc
      181 aaatcgaaac gttcgcagga agagaaccac cgccaaatca gcccgtccaa ggttgatttg
      241 atgaagataa ctgccgtttc cttgtccaaa tcgtcagcca aatcctgatt ttccaccgct
      301 tcggtcaaaa cggcggtaat tttctcgcgc cagattgcct gatgcttgcg ggcaatggcg
      361 ataacggcgg cgttttgctc cgtgtgttcg cattttaaaa acaggatgtt gtggaatttg
      421 tagtagatgt cgttgctttg cagccgctcg aaaaagtgca gcagcgtgtg gcggaatacc
      481 gcccaagacc ctccttcggc atcttcggca tcttgcgcga tgcagttttc gatgtcgtcg
      541 cagatacgtt ggaacagcgc gtcgaacaag tcttccttat ttttgaaatg ccaatagagc
      601 gcgccgcgcg ttacgccggc ggcttgggcg atttcgttga gcgaggtgcg cgcaatccct
      661 ttgcggtaaa aggtttccaa ggcggcaagc atcaggtgtt ctttggtttt caaggcttcg
      721 gttttggttt ttctcataat ggcgttttcg tttcgggtcg gtttgatgag ggcggattat
      781 aaaaaagact ttgtaaccat gcaatcgtgt atgtataatg aaacccatga aattgagact
      841 acatctcaac tttgaaaaca ggcataacct gctttgcaac ccgttcgaac attcgggtat
      901 caaagcaggc ggtttttata tc
//
LOCUS       DAWGNT010000257          912 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.257, whole genome shotgun sequence.
ACCESSION   DAWGNT010000257 DAWGNT010000000
VERSION     DAWGNT010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.257"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(67..846)
                     /locus_tag="WHR98_001987"
     CDS             complement(67..846)
                     /locus_tag="WHR98_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HEZ2308606.1"
                     /translation="MKLVRPQKISDQVLSVLEERIAEGVYAEGGKIPPERVLAEEFGV
                     SRPSVRSALNVLVARQVLEARQGDGYYVSVKPQQDFLQSWQELLGKHSNWEQDVFDFS
                     CHIEGCMAALAAERRTDADLKRIGFWLEKFEEACESGNLEHQSEADVSFHQTIADAAH
                     NLLFSHLSGGLLKMLYRQTRSSLIYLNQEEDPRPKLMAQHRVLYEAISNRRPGEASEA
                     AKAHLNYVASSIMKDREYQSRNRHADTLAQNDLKRVQDWEV"
BASE COUNT          221 a          291 c          180 g          220 t
ORIGIN      
        1 cgtactggtt taaatttagt tcactatacc gatacatccg aatatgccag accgtctaaa
       61 cggtattcat acctcccaat cctgcacgcg cttcaaatcg ttttgcgcca aagtatccgc
      121 gtggcggtta cggctctgat attccctgtc tttcatgatg ctgcttgcca cataattcaa
      181 atgtgccttt gccgcctccg aagcctcgcc cggccgacgg ttcgatatcg cctcatacag
      241 cacgcggtgc tgcgccatca gtttcggacg cggatcttct tcctgattca gataaataag
      301 gctgctgcgc gtctgccggt acagcatttt caacaaaccg cccgacaaat ggctgaacaa
      361 caaattgtgc gccgcatccg caatcgtctg atggaagctg acatcggctt cgctctgatg
      421 ttccagattg ccgctttcgc acgcctcctc aaacttttca agccaaaacc caatccgctt
      481 caaatcggca tccgtccggc gttctgccgc caatgccgcc atacagccct cgatgtggca
      541 gctgaaatca aaaacatcct gttcccaatt ggaatgcttg cccaaaagct cctgccaact
      601 ttgcaaaaaa tcctgctgcg gcttgaccga aacataataa ccgtctccct gcctcgcttc
      661 caaaacctga cgggcaacca aaacattcaa tgccgaccgg accgacgggc gcgaaacgcc
      721 gaactcttcc gccaaaacgc gttcgggcgg aatcttgccc ccttccgcgt aaaccccttc
      781 cgcaatgcgc tcctccaata ccgacaatac ctgatcgctg attttctgag gccttaccag
      841 tttcattact cctcctttat aaagattccc tgcagaaccc ttccgaaata tagtggatta
      901 acaaaaatca gg
//
LOCUS       DAWGNT010000258          890 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.258, whole genome shotgun sequence.
ACCESSION   DAWGNT010000258 DAWGNT010000000
VERSION     DAWGNT010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.258"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            765..>890
                     /locus_tag="WHR98_001988"
     CDS             765..>890
                     /locus_tag="WHR98_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HEZ2308607.1"
                     /translation="MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSE"
BASE COUNT          298 a          257 c          140 g          195 t
ORIGIN      
        1 ccaaagacga cgccgttacc ggcaccgaca aaatcgacac caagcacctg ccgtcaacct
       61 gccgcgatga ttcatctgtc gtttgcatag aaacaccacc tacggctttc tataaaaata
      121 cctaaaccgt cattcccacg aacctacatc ccgtcattcc cacgaaagtg ggaatccaga
      181 acgcaaaatc tcaagaaacc tttttacccg ataagtttcc gtgccgacag acctggattc
      241 ccgcttttgc gggaatgacg aatccatccg cacggaaacc tgccgcgatg attcaactgc
      301 cggttgcaca ggaacaccac gcgccgactt caaacacttt cagaaaacgg aaatttttaa
      361 aaattaaatt taaaatttcc cacccaaccc accctatgct accgcgcaaa ttcaaaaatc
      421 tcaaattccg acccaatcaa cacacccgat gccccatgcc aatagagata ccccacacca
      481 ataaaaaagt gccgaaaatc ggcactaaaa ctgacaattt tcggcattac tgacaaaaaa
      541 cggtaacccc ccgcttcctc aaaccacacc caaacgaaag aaaatgtaaa ataaaaacaa
      601 ccacataaag ataaacgcat aaattttcac ctcaaaacac aaacttgata ccaatcttgc
      661 tttataatac acaggtatcg caacaaaata ccgatggtca aatacattgc ataatgccga
      721 tggcgtaagc ttgaggcatt tcctttccaa ttaggagtaa ttttatgaac acccttcaaa
      781 aaggttttac ccttatcgag ctgatgattg tgattgccat cgttggcatt ttggcggcag
      841 tcgcccttcc tgcttatcaa gactacacag cccgcgcaca agtttccgag
//
LOCUS       DAWGNT010000259          877 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.259, whole genome shotgun sequence.
ACCESSION   DAWGNT010000259 DAWGNT010000000
VERSION     DAWGNT010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.259"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..218)
                     /locus_tag="WHR98_001989"
     CDS             complement(<1..218)
                     /locus_tag="WHR98_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002230241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FrpC operon protein"
                     /protein_id="HEZ2308608.1"
                     /translation="MRPYATTIYQLFILFIGSVFTMTSCEPVNEKTDQKAVSAQQAKE
                     QTSFNNPEPMTGFEHTVTFDFQGTKMVIP"
     gene            809..>877
                     /locus_tag="WHR98_001990"
     CDS             809..>877
                     /locus_tag="WHR98_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HEZ2308609.1"
                     /translation="MLPSKYEDNALQIKEKSTERAAP"
BASE COUNT          287 a          158 c          141 g          291 t
ORIGIN      
        1 gggataacca ttttggtgcc ctgaaaatca aatgtaaccg tatgttcaaa tcctgtcatt
       61 ggctcgggat tgttgaaact ggtttgttct ttagcctgtt gcgcacttac tgctttttga
      121 tctgtctttt cattcacagg ttcacatgag gtcatagtaa aaacactccc aataaacaaa
      181 ataaaaagtt gataaatggt agtagcatat ggtctcataa tttcaagcct agaaattagt
      241 taaagaatat attatggtag atactaactc tttagttaaa aataatttac taacttttac
      301 tacttaggta taaattccaa tacttaacta aactgagggt aaatatattt atccaagata
      361 gaagagaaac ttttttctct gtttccgcaa gaatagttac gggttgtgaa atatgctcta
      421 tacccaagca gtagatattt tcattgttac ttaccgtatt gcttcataga attggcactc
      481 tacgctttcc tttaaaaatc gtcaataacg attatcattt tctttaaatt tattcaaaac
      541 aatattctta tacacatctc aagcccgctg aaataaagca aaatggtggt tcatcgactg
      601 taatgccaat ttcaaagcag cctgcacttt gacaacacac aagatatacg ggaaggacag
      661 ggcatcagca tatatttcag cccgaagccg tttcattcgt ttaaaaaact gcttttttca
      721 caatttacct ttacaaagcc tatacgtatc cttacaattt gttttgctgt ttttggtata
      781 tttttggggc tgtactagat tagcagatat gttaccctcg aaatatgaag ataacgcact
      841 gcaaattaaa gaaaaaagta cagaaagagc tgctccg
//
LOCUS       DAWGNT010000260          859 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.260, whole genome shotgun sequence.
ACCESSION   DAWGNT010000260 DAWGNT010000000
VERSION     DAWGNT010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.260"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(99..575)
                     /locus_tag="WHR98_001991"
                     /pseudo
     CDS             complement(99..575)
                     /locus_tag="WHR98_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019273676.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="T cell/B cell stimulating protein TspB"
BASE COUNT          282 a          190 c          130 g          257 t
ORIGIN      
        1 tacccaaata cccccttaat cctccccgga tacccgataa tcaggcatcc gggttacctt
       61 ttaggcggca acaggcgcac ttagcctgag acctttgcaa atttgtcggt ttcggggtcg
      121 tattggtagc cttgtgcctg tatgtcttct ttgaaagttt cgtatacgtc atgggctaaa
      181 agggcggttc cgacataagg aactgccctt gtacttaatt tcgcgcctaa gcgggcaagt
      241 ttgctgaccc ccgccaatac gccggcgggg gaaactgatg aagatacaac cgaactaact
      301 ttacccgtac ttgatgctcc agtagataca tgcctaactt ttaaatcttg agcttctgaa
      361 gttaaatatc ttcccgattc tctatcaaat acacctttcc aaattcttct tcttttgtca
      421 tctgaacctc gaatacctaa atatctgcca tcatcataaa cttcaaccct atcaaattta
      481 cccggaacat ttactgatgc caatgcaaat ttaggtacaa aaaaactaaa gcataggata
      541 atctttaaaa aatttcgccc taggataaga aacataacat tttgcttcat ctaatttaat
      601 taataatgta gaagaatcag ggaattgaat ttctataaaa tctctatcat aacgatgaaa
      661 gaaatttcta aaaatatcaa atgaaaacga agatttaaaa accccttttc taatcaattc
      721 cctataataa attaacgctt gtggtaaatc tctataaata tgtgaatcag tttgaaattt
      781 aactaaatga tattcagaaa taaacataat tcggacctct taaaatcact ctaaaaatcc
      841 gattctacca ccgctcaat
//
LOCUS       DAWGNT010000261          826 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.261, whole genome shotgun sequence.
ACCESSION   DAWGNT010000261 DAWGNT010000000
VERSION     DAWGNT010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.261"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            366..665
                     /locus_tag="WHR98_001992"
     CDS             366..665
                     /locus_tag="WHR98_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010951246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEZ2308610.1"
                     /translation="MQRCFNWFDHYCRRLEKYFRRCSIMETWVQNYTAIGGSLYLTAA
                     AALLPIVFLFAVLTVLKLKGYQAGLYTLLIALAVAAFGFGMPAGMAVSSLPPQPH"
     gene            659..826
                     /locus_tag="WHR98_001993"
                     /pseudo
     CDS             659..826
                     /locus_tag="WHR98_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003777280.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
BASE COUNT          224 a          227 c          174 g          201 t
ORIGIN      
        1 ccgtactggt ttttgttcat ccactataca tcaaacatca aattggactg accaatcagg
       61 gcggattcta atgacacgcc gttcccgccg tcaacggcat ttacctcgca ccgcccccga
      121 aacacaggaa aaaactacac caaactacaa tttttgttta tgcaaatatt tgttttgaca
      181 ggatttaaac gaaagctccg attcaaatct gccgaaccgc ccaaaaatat atagtggatt
      241 aacaaaaatc aggacaaggc gacgaagccg cagacagtac agatagtacg gtaaggcgag
      301 gcaacgccgt actggtttaa atttaatcca ctctattgac ctgaatatta aagtttcgca
      361 aagtaatgca acgttgcttt aattggtttg accactattg ccgacgatta gaaaaatatt
      421 ttcggagatg ttcaattatg gaaacttggg ttcaaaacta cacggcaatc ggcggcagcc
      481 tgtatctgac tgccgccgcc gcactcttac ccatcgtctt tttatttgcc gtgctgaccg
      541 tcctgaagct gaaaggctat caggcggggc tttatacgct gctgattgcg cttgccgttg
      601 ccgcattcgg cttcgggatg ccggcgggta tggcggtttc ttccctgccg ccgcagccgc
      661 actgacccaa cgcccctacg ccacgctgga tttgaccgcg cattacaaaa tcagcaaatc
      721 cacccgcatc ggtttaaact ttgaaaacgt gttcaacaaa cgctaccgcc ctatgcccga
      781 cattcacgtt tacggcacgc cgcgcaacct gaccgcaacc gtcaaa
//
LOCUS       DAWGNT010000262          805 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.262, whole genome shotgun sequence.
ACCESSION   DAWGNT010000262 DAWGNT010000000
VERSION     DAWGNT010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.262"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..743)
                     /locus_tag="WHR98_001994"
     CDS             complement(join(<1..524,524..743))
                     /locus_tag="WHR98_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002242698.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HEZ2308611.1"
                     /translation="MARTAITDNIWEQLQTTMKAHGCHQWKNDRTVMEAILWKLRTGA
                     PWRDIPIELGSWKTAYNRFNRWSKKGLWQKFFFDLRKEIDKEWVFIDGSYVRCHQHAS
                     GARRGFDRAIGQSRGGNTTKIHLCVDSHGNPLDFKVTGGNVHDSQVANDLIEVIQEAQ
                     YFIADKGYDSQEIRDKAIEHGMKAIIPKRKNAKKPNPDFDSYLYKLRHLVENAFARLK
                     QFRSIATRYEKLARNFKSMLYLACSIIHAK"
BASE COUNT          193 a          174 c          160 g          278 t
ORIGIN      
        1 cttagcatga ataatagagc aagccaagta aagcatcgat ttaaaattac gagctaattt
       61 ctcatagcga gtagcaatac tacgaaactg ctttaatcgt gcaaatgcat tctcgactaa
      121 gtggcgtaat ttataaaggt agctatcaaa atcagggtta ggtttcttgg catttttacg
      181 ctttggtata atagctttca taccgtgttc tatcgcttta tctctgattt cttgcgagtc
      241 ataccctttg tcagcgataa aatactgggc ttcttgtatg acttctatca agtcgtttgc
      301 aacttgactg tcgtgcacgt tacccccagt gactttaaaa tcgagcggat ttccatgcga
      361 gtccacacat aggtgtattt ttgtcgtgtt tccgccacgg ctttgtccaa ttgctctatc
      421 gaaaccacgc cgagctccac ttgcatgttg atgacaccgt acataacttc cgtcgatgaa
      481 tacccattct ttgtcaattt cttttcgtag atcaaaaaaa aattctgcca caagcctttt
      541 ttagaccatc ggttaaagcg gttataagcg gttttccatg accctagctc aataggtatg
      601 tctcgccatg gtgcacctgt tcttagcttc catagtatgg cttccatcac ggtacggtcg
      661 ttcttccatt gatgacagcc gtgcgctttc atggttgttt gtaattgttc ccatatgttg
      721 tcagttattg cggttctcgc cattgtttgt gtttgcctat atttcgttgg aatatagggt
      781 taaaataggg ctcttttggg cttat
//
LOCUS       DAWGNT010000263          763 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.263, whole genome shotgun sequence.
ACCESSION   DAWGNT010000263 DAWGNT010000000
VERSION     DAWGNT010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.263"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
BASE COUNT          174 a          223 c          186 g          180 t
ORIGIN      
        1 aagatggcgg cataaagcgc ggtatggcgg aaaacccgcc tttttaaagt tttattcatc
       61 gtatttcctt ttcggtcaaa ccccccgccc ttcgggcatc cgtccttcgg ggcggcagga
      121 tcaggctttg tccgggaggg gtgcaagccc ttccgaatca gggcggcgcc ttatgtgccg
      181 ccctgcgtgt tggaacatat tttatccctt aaatcttgct tcgcgggata ccgtcggcgg
      241 caggcgcgcc gcaaacggcg ggattcggca aaccgcccga ttccgcgccc gccgaattgc
      301 tggttggaaa gcttacctcc ccattttaac tttgcacact gatcacggta aagcgttttt
      361 tagcaaaccg ctgcagatgc ccgacagtct ggattcccgc ctgcgcggga atgacggttt
      421 agaagttgcc cgaaacctca aaaaaaaccg aaaccgaaca agccggattc ccgcctgcgc
      481 gggaatgacg aacccatcca tacggaaacc tgcaccgcgt cattcccgcg aacctacatt
      541 ccgtcattcc cacgaaagtg ggaatctaga atctcggact ttcagataat ctttgaatat
      601 tactgttgtt ctaaggtcta gattcccgcc tgcgcgggaa tgacgggtct tttataaact
      661 ttgaatattg ctgttatccc aaggtctaga ttcccgcctg cgcgggaatg acgaatccat
      721 ccgcacagaa acctgcaccg cgtcattccc acgaacctac att
//
LOCUS       DAWGNT010000264          752 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.264, whole genome shotgun sequence.
ACCESSION   DAWGNT010000264 DAWGNT010000000
VERSION     DAWGNT010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.264"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..387)
                     /locus_tag="WHR98_001995"
     CDS             complement(<1..387)
                     /locus_tag="WHR98_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308612.1"
                     /translation="MMYSFEANANAVKISETVSVDTGQGAKIHKFVPKNSKTYSSDLI
                     KTVDLTHIPTGAKARINAKITASISRAGVLAGGGKLARLGAKFSTRAVPYVGTALLAH
                     DVYETFKEDIQARGYQYDPETDKFAKV"
     gene            complement(371..688)
                     /locus_tag="WHR98_001996"
     CDS             complement(371..688)
                     /locus_tag="WHR98_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1132 family protein"
                     /protein_id="HEZ2308613.1"
                     /translation="MNKPFITQAQLALYKYQPSSKYFGQSMAVIAQSEFVEFAKINKS
                     ENVIDCFSFFWNRRIKHDIWLISFSDNSEMVIKESLKDGHKIYKFEFCEIVDNCNFDD
                     VFV"
BASE COUNT          205 a          155 c          142 g          250 t
ORIGIN      
        1 gacctttgca aatttgtcgg tttcggggtc gtattggtag cctcgtgcct gtatgtcttc
       61 tttgaaagtt tcgtatacgt catgggctaa aagggctgtt ccgacatagg gaaccgccct
      121 tgtgctgaat ttcgcgccta agcgggcaag tttgccgccc cccgccaata cgccggcgcg
      181 ggaaatgctg gcggttattt tggcgttgat tcgggctttt gcgcccgtag ggatgtgtgt
      241 taaatctacc gtttttatta aatcagatga ataagtttta ctatttttag gtacaaactt
      301 atgaattttc gcaccttgtc cggtatcaac tgaaacagtt tcagatattt ttactgcatt
      361 tgcattcgct tcaaacgaat acatcatcaa aattgcaatt atcgacaatt tcgcaaaatt
      421 caaatttgta tattttatga ccatctttca gggattcttt aattaccatt tctgaattat
      481 cagaaaatga gattagccaa atatcatgtt taattcttct attccagaaa aaagagaaac
      541 aatcaataac attttcagac ttattaatct tcgcaaattc aacaaattca gattgcgcta
      601 taaccgccat cgattgccca aaatacttac tagacggctg gtatttataa agtgccaact
      661 gcgcctgcgt aataaacggc ttgttcatgg ttctgccttt caatgattgt tttgaaagcc
      721 tgattttgac accataactt catgcgctca at
//
LOCUS       DAWGNT010000265          724 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.265, whole genome shotgun sequence.
ACCESSION   DAWGNT010000265 DAWGNT010000000
VERSION     DAWGNT010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.265"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(127..>724)
                     /locus_tag="WHR98_001997"
     CDS             complement(127..>724)
                     /locus_tag="WHR98_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010791153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEZ2308614.1"
                     /translation="LSIGQIVKVKPAGYAAPKTSAVESRPAVPAAVQTPVKPAAQPPV
                     QSAPQPAAPAAENKAVPAPAPQSPAASPSGTRSVGGIVWQRPTQGKVVADFGGNNKGV
                     DIAGNAGQPVLAAADGKVVYAGSGLRGYGNLVIIQHNSSFLTAYGHNQKLLVGEGQQV
                     KRGQQVALMGNTDASRTQLHFEVRQNGKPVNPNSYIAF"
BASE COUNT          160 a          205 c          198 g          161 t
ORIGIN      
        1 aaacacagtc aaacaaattt atatgccccg tcccttccga ataatttgaa aacacagccg
       61 ccaaaaacaa aaatgccgtc tgaaaacctt tcagacggca tttccaattt gatttcaggc
      121 agaaagtcag aacgcgatat agctgttcgg gttaaccggt ttgccgtttt gccgcacctc
      181 gaaatgaagc tgcgttctgg aagcgtcggt attgcccatc aaagcgacct gctgcccgcg
      241 tttgacctgc tggccttcgc cgaccagcaa tttttggttg tgcccgtatg cggtcaggaa
      301 ggaagaatta tgctggatga tgaccaagtt tccgtatccc ctcaaaccgg aaccggcata
      361 aaccactttg ccgtcagccg ccgccaaaac gggttgtccc gcatttcctg caatatcgac
      421 acccttgttg ttgccgccga aatcggcaac cactttacct tgcgtcggac gctgccaaac
      481 aatgccgccg accgaacgcg tgccggaagg cgaagcggca ggagattgcg gggcgggcgc
      541 gggaaccgct ttattttccg cagcgggcgc ggcaggttgc ggcgcggact gcacaggcgg
      601 ttgcgcggcg ggtttcacag gggtttgcac ggcagccggt acggcgggcc tgctttctac
      661 ggctgaggtt ttcggtgcgg catatcctgc cggtttgact ttaacaatct gaccgatgct
      721 caac
//
LOCUS       DAWGNT010000266          680 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.266, whole genome shotgun sequence.
ACCESSION   DAWGNT010000266 DAWGNT010000000
VERSION     DAWGNT010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.266"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(80..565)
                     /gene="fxsA"
                     /locus_tag="WHR98_001998"
     CDS             complement(80..565)
                     /gene="fxsA"
                     /locus_tag="WHR98_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009349087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HEZ2308615.1"
                     /translation="MRFFGIGFLVLLFLEIMSIVWVADWLGGGWTLFLMAAGFAAGVL
                     MLRHTGLSGLLLAGAAMRSGGRVSVYQMLWPIRYTVAAVCLMSPGFVSSVLAVLLLLP
                     FKGGAVLQAGGAENFFNMDQSGRKEGFSRDDDIIEGEYTVEEPYGGNRSRNAIEHKKD
                     E"
BASE COUNT          200 a          219 c          120 g          141 t
ORIGIN      
        1 gtactggttt ttgttaatcc actatatttt caaaccggaa aaatgccgtc tgaaccttca
       61 gacggcattc cattcacatt tattcgtctt ttttgtgttc gatggcgttt cgggaacgat
      121 tgccgccgta aggctcttca accgtatatt ccccctcgat aatatcgtca tcgcgggaaa
      181 agccctcttt tctgcccgat tggtccatgt tgaaaaaatt ttccgcacct cctgcctgca
      241 acactgcacc tcccttaaac ggcagcagca gcaacaccgc caacaccgag gatacgaatc
      301 ccggactcat cagacacacc gccgccaccg tataacggat aggccacaac atctgataaa
      361 cggataccct cccgccgctt ctcattgccg cgcccgccaa taaaagaccg gacagccccg
      421 tatgcctgag catcagcaca ccggcggcaa aacctgccgc catcaaaaac aacgtccagc
      481 cgccgcccaa ccaatcggca acccacacaa tcgacataat ctccaaaaac agcagcacca
      541 aaaaaccgat accgaaaaat ctcattgacc gtcatcctta tatttaagta aacagcaaac
      601 cgcccgaaca ggactccaag cgacctgcct gtaaatgatt acaaaaccat gtgcttcaag
      661 ccgaaacaat gtgaaatcac
//
LOCUS       DAWGNT010000267          654 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.267, whole genome shotgun sequence.
ACCESSION   DAWGNT010000267 DAWGNT010000000
VERSION     DAWGNT010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.267"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
BASE COUNT          193 a          150 c           94 g          217 t
ORIGIN      
        1 ccccgtgggc gtgccaattc aaaatgcctc cgattatatc ggaggcattt ctcatttctc
       61 atttctcatt tctcatttct catttctcat ttctcatttc tcatttctca tttctcatac
      121 tgagaccttt gcaataacat aggttactaa aattttatgc tcaatctcat tttcaaaatg
      181 caaaactttt ctgatttttc ctactttttg ctcaatatta ggaaggtttt aggcaattga
      241 aaattttttg gcgcattttt atgcgtcaaa tttcgttaac agactatttt tgcaaaggtc
      301 tcatgcagat attcgaatat cgaatttgcc ttataattac ggttttctgt cttatctgcc
      361 ttaaaacgcc ggtattccgt ttgaaccaaa ttatatttgc cgaaacgctc aaaaatctcc
      421 cttacctgcc cgacagacat caagccttcg ttgttgtagc tgagaaaaat atattgaaag
      481 tccgcatccc taatcaaagc ctcaaatacc ggaatcacat ccgattttga gcaagtccgc
      541 gctaaaacac atcgtacagc gcaaaaccgg atgggaatgg caaaatccgg aaacaaacat
      601 ttttcaaagc atacaaacaa aaaaatacca acctccggtt ggtattcctt aact
//
LOCUS       DAWGNT010000268          637 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.268, whole genome shotgun sequence.
ACCESSION   DAWGNT010000268 DAWGNT010000000
VERSION     DAWGNT010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.268"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(1..165)
                     /locus_tag="WHR98_001999"
                     /pseudo
     CDS             complement(1..165)
                     /locus_tag="WHR98_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002237266.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Caudovirus prohead protease"
     gene            438..>637
                     /locus_tag="WHR98_002000"
     CDS             438..>637
                     /locus_tag="WHR98_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002216368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308616.1"
                     /translation="MFDGAKVVRRMEGNLWVFGMVALEKTCFKGQMPSENRFQTAFSV
                     YLKQTGKGSNILQSSYSHKRFIV"
BASE COUNT          168 a          114 c          187 g          168 t
ORIGIN      
        1 gctgcccgcg gataaaaaat aggggaacct gtaaaggaag gggcatcggc cgccgtcggt
       61 gcttttttgt ttggaaggga aatggctaaa atatgtagca ttatgttctg tatcgttgtt
      121 taccgcttcc gcacctttgt ccgccttaaa gcaggtagac accgcaatga atcgacgcaa
      181 agaaaatgcc gtctgaacat gcgttcgggc ggcgttttgt tggggggtat cggagcggaa
      241 cgtctgaaaa agggtttcag gcggtctttg ggcgtgtggt aacagtcgaa aacgtgataa
      301 ggctacctga aaagtttggg agattttcag gtggcctttg gtattgggcg caacagacgc
      361 aggtacagat taggcggtgt gccgtaatcg tacgaatgcc gattcaacct aagcagacat
      421 cagtatttag gaagtggatg tttgatggag caaaggttgt acgaaggatg gaaggcaacc
      481 tgtgggtgtt tggtatggtc gcgcttgaaa aaacgtgttt taagggacaa atgccgtctg
      541 aaaatcggtt tcagacggca ttttctgttt atttaaagca aacaggaaaa ggcagcaata
      601 ttctgcagtc ttcctattca cacaagcgtt ttatagt
//
LOCUS       DAWGNT010000269          617 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.269, whole genome shotgun sequence.
ACCESSION   DAWGNT010000269 DAWGNT010000000
VERSION     DAWGNT010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.269"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            53..442
                     /locus_tag="WHR98_002001"
     CDS             53..442
                     /locus_tag="WHR98_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002258351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HEZ2308617.1"
                     /translation="MNPHEKLLTTDNPILRQRAKAMRQEMSGAEAKLWQHLRAGRLNG
                     YKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHTEQAAYDHARTAYLNSLGFTVLRFWN
                     HEILQQTNDVLTEILLVLQELEKQAAR"
BASE COUNT          191 a          152 c          157 g          117 t
ORIGIN      
        1 tctccccgtg ggagagagtt agagagaggg cagcaaacag cacgacaaca aaatgaaccc
       61 gcacgagaaa ctcttgacca ccgacaaccc catcttgcgc caacgcgcca aagccatgcg
      121 ccaagaaatg agcggggcgg aagcaaaatt gtggcagcac ctgcgggcag gtcgtctgaa
      181 cggctataaa ttccgccgcc agcagccgat gggaaactat attgttgatt ttatgtgcgt
      241 aacgcccaag ttgattgtcg aagcagacgg agggcagcac acagaacaag ccgcatacga
      301 ccacgcgcgg acggcatatc tcaacagctt gggctttacc gtactgcggt tttggaatca
      361 cgagatttta cagcagacaa acgatgtgct gacagaaatc ctgctcgtgt tgcaagaatt
      421 ggaaaagcaa gctgcacgat agcagatggc tgattttgat tggattattg aaaataatag
      481 gataaagccg actgaattga gcatttataa aggccgtctg aaaaacaaaa agcagcctgc
      541 ataacctgat tagtttacag aaaccttagc cccaacagcc accccatcct ctctcccgtg
      601 ggagagagct agagaga
//
LOCUS       DAWGNT010000270          615 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.270, whole genome shotgun sequence.
ACCESSION   DAWGNT010000270 DAWGNT010000000
VERSION     DAWGNT010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.270"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..138)
                     /locus_tag="WHR98_002002"
     CDS             complement(<1..138)
                     /locus_tag="WHR98_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014581020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HEZ2308618.1"
                     /translation="MSTFFQQTAQAMIAKHIDRFPLLKLDQVIDWQPIEQYLNRQKTR
                     YL"
     gene            complement(169..531)
                     /locus_tag="WHR98_002003"
     CDS             complement(169..531)
                     /locus_tag="WHR98_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002212807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEZ2308619.1"
                     /translation="MNQLDQLGTRINLICNVFDKWIGQQDLNYNLFAVLYTLATEGSR
                     TQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQESEQDRRERLLSLTEKGKAHAAPLTE
                     SAQEFSDKETFAKFPKIP"
BASE COUNT          133 a          128 c          164 g          190 t
ORIGIN      
        1 aaggtaacgg gttttttgac gattcaggta ttgttcgatc ggctgccaat caatcacttg
       61 atccaacttc aatagaggga aacggtcgat gtgtttagca atcatggctt gcgcggtttg
      121 ttgaaagaag gtgctcatgg aaaatctcct aaatgtcttg gtgggaattt aggggatttt
      181 ggggaatttt gcaaaggtct ctttgtcgct gaattcctgc gcgctttctg ttaaaggtgc
      241 ggcatgggct ttgccttttt cggtcagcga cagcaaccgt tcgcgccggt cctgttcgct
      301 ttcctgccat tcaatcaacc cttgtccggc aagggttttg catacgcctg aaacggtctg
      361 tttgggcagg ctccactttt cgccgatatg cttttgcgtg cggctgcctt cggttgctag
      421 ggtataaagt acggcaaaga ggttgtaatt cagatcctgc tgcccgatcc atttgtcgaa
      481 gacattgcaa atcaggttga tacgggtgcc aagttggtcg agttggttca taattggtct
      541 tgatattgac taaatttgtg cggattatag tggattaaca aaaaccagta cggcgttgcc
      601 tcgccttagc tcaaa
//
LOCUS       DAWGNT010000271          615 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.271, whole genome shotgun sequence.
ACCESSION   DAWGNT010000271 DAWGNT010000000
VERSION     DAWGNT010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.271"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
BASE COUNT          179 a          162 c          122 g          152 t
ORIGIN      
        1 gcggagcgga taaattctcg caatctaaaa ccttgtcatt tccataaaaa acagcaaccc
       61 gaaacagcaa cttaaaaaca gcaacctgaa acctcgtcat tcccgcgcag gtgggaatcc
      121 agatcattgg gtggcggcaa tgttcaaaag tcgtctgaaa aatcagaagt tctagattcc
      181 cgttttcacg ggaatgacgg aatttcagac ggcatctgcc cgccccgtca ttcccgcgca
      241 ggcgggaatc tagtccgttc ggtttcagtc atttacgata aattcctgtt gcttttcatt
      301 tctggattcc tacttccgtg ggaatgacgg aggagcggat aaattctcgc aatctaaaac
      361 ctcgtcattt ccataaaaaa cagcaacccg aaacagcaac ttaaaaacag caacctgaaa
      421 cctcgtcatt cccgcgcagg cgggaatcta gtccgttcgg tttcggtcat ttacgataaa
      481 ttcctgttgc ctttcatttc tagattccca cttccgtggg aatgacggcg gagcggataa
      541 attctcgcaa tctaaaacct cgtcatttcc ataaaaaaca gcaacccgaa acagcaacct
      601 gaaaccttgt cattc
//
LOCUS       DAWGNT010000272          599 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.272, whole genome shotgun sequence.
ACCESSION   DAWGNT010000272 DAWGNT010000000
VERSION     DAWGNT010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.272"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..150
                     /locus_tag="WHR98_002004"
     CDS             <1..150
                     /locus_tag="WHR98_002004"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308620.1"
                     /translation="SIRQGKPEEEFSRKMAGCLTDLENCLEKYLEQFGPVSESIEACT
                     VKLQE"
     gene            172..465
                     /locus_tag="WHR98_002005"
     CDS             172..465
                     /locus_tag="WHR98_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002225931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEZ2308621.1"
                     /translation="MKTNDKLNRQIDVLQKQSAAIHNEAYIEMNTLLYRHREVVSVHN
                     RKADYAEKGKERIALFPRGLNGITKLPAAVLLPERPDCFDMKAVWQMFNRIPR"
BASE COUNT          159 a          151 c          159 g          130 t
ORIGIN      
        1 tccattcggc agggaaagcc tgaagaagaa ttttcccgca agatggccgg ctgcctaacc
       61 gacttggaaa actgtttgga aaaatacctc gaacagttcg ggccggtatc ggaaagtatc
      121 gaagcctgta ccgtcaaact gcaggagtaa ccgtcgttct tcaacaggct gatgaaaacc
      181 aacgacaagc tcaataggca gattgacgtg ttgcagaaac agtcggcagc catccacaac
      241 gaagcctata tcgaaatgaa cacgctgctt taccgccacc gcgaagtggt ttccgtccac
      301 aaccgcaagg cggattatgc ggaaaagggc aaagagcgga ttgcgctgtt cccgcgcggc
      361 ttgaacggca tcaccaagct gcctgccgcc gtcctgttgc ccgagcgtcc cgattgtttt
      421 gatatgaagg cagtttggca aatgtttaat agaataccga ggtaggcgta tcggctgccg
      481 gataaaaatg ccgtctgaaa cggaagcgtt cagacggcat tgttgcagtg gaacaaatca
      541 aaatgcaccc cgtcattcct gtctgtacgg tgatagcggc agtgttttcc tgcttcgtt
//
LOCUS       DAWGNT010000273          566 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.273, whole genome shotgun sequence.
ACCESSION   DAWGNT010000273 DAWGNT010000000
VERSION     DAWGNT010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.273"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..>566
                     /locus_tag="WHR98_002006"
     CDS             <1..>566
                     /locus_tag="WHR98_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002246772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEZ2308622.1"
                     /translation="AAERITHDYPEATGANNTSTVSDYFRNIRTHSIHPRVSVGYDFG
                     GWRIAADYARYRKWNNNKYSVNTKNVQVHKSNGNREDLKTENQENGTFHAVSSLGLSA
                     VYDFDTGSRFKPYAGVRVAYGHVRHSIDSTKKTTNVLTVPSNIPGGTPTIYNQGSTQN
                     AYHESHSIRRLGLGVIAGVGFDITPKLT"
BASE COUNT          164 a          162 c          128 g          112 t
ORIGIN      
        1 gccgccgaac gcattaccca cgattatccg gaagcaaccg gtgcaaacaa cacaagcaca
       61 gtaagcgatt atttcagaaa catccgtacg cattccatcc acccccgggt gtcggtcggc
      121 tacgacttcg gcggctggag gatagcggca gattatgccc gttacagaaa atggaacaac
      181 aataaatatt ccgtaaacac aaaaaatgtg caggtgcata aaagcaatgg caacagggaa
      241 gacctgaaga cggaaaatca ggaaaacggt acattccacg ccgtctcctc gctcggcttg
      301 tccgccgttt acgatttcga taccggttcc cgcttcaaac cctatgcagg cgtgcgcgtc
      361 gcctacggac acgttagaca cagcatcgat tcgaccaaaa aaacaacaaa tgttcttacc
      421 gtccccagca atattcctgg cggaacacct acgatttata atcagggaag tacgcaaaac
      481 gcctatcacg aaagccacag catccgccgc ttgggtcttg gtgtcatcgc cggtgtcggt
      541 ttcgacatca cgcccaagct gacttt
//
LOCUS       DAWGNT010000274          561 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.274, whole genome shotgun sequence.
ACCESSION   DAWGNT010000274 DAWGNT010000000
VERSION     DAWGNT010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.274"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            21..>561
                     /locus_tag="WHR98_002007"
     CDS             21..>561
                     /locus_tag="WHR98_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002234152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Opacity protein opA54"
                     /protein_id="HEZ2308623.1"
                     /translation="MQADLAYAAERITHDYPKATGADKDKISTVSDYFRNIRAHSIHP
                     RVSVGYDFGGWRIAADYASYRKWNNNKYSVNTKELQRNKEHGNWKELKTENQENGSFH
                     AASSLGLSAIYDFKLNDKFDKFKPYIGVRVAYGHVKHQVHSVKKETTTTFLAPTGDAK
                     VPGKIVEGPFSKPAYHESHS"
BASE COUNT          180 a          143 c          126 g          112 t
ORIGIN      
        1 gcgggcgcgg cccgtattat gtgcaggcgg atttagctta tgccgccgaa cgtattaccc
       61 acgattatcc gaaagcaacc ggtgcagaca aagacaaaat aagcacagta agcgattatt
      121 tcagaaacat ccgtgcgcat tccatccacc ctcgtgtgtc ggtcggctac gacttcggcg
      181 gctggagaat agcggcagat tatgccagtt acagaaaatg gaacaacaat aaatattccg
      241 tcaacacaaa agagttgcaa agaaacaagg agcatggcaa ctggaaagaa ctgaagacgg
      301 aaaatcagga aaacggcagc ttccacgccg cttcttctct cggcttatcc gccatttacg
      361 atttcaaact caacgataaa ttcgataaat tcaaacccta tatcggtgtg cgcgtcgcct
      421 acggacacgt taaacatcag gttcattcag tgaaaaaaga aaccacgact actttccttg
      481 caccaacggg agacgctaaa gtgccaggca agatcgtaga aggtccgttc agcaaacctg
      541 cctatcacga aagccacagc a
//
LOCUS       DAWGNT010000275          535 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.275, whole genome shotgun sequence.
ACCESSION   DAWGNT010000275 DAWGNT010000000
VERSION     DAWGNT010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.275"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            complement(<1..178)
                     /locus_tag="WHR98_002008"
     CDS             complement(<1..178)
                     /locus_tag="WHR98_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016687401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEZ2308624.1"
                     /translation="MRTYLIHVKLLGMAVLWGASWPMGRILGQSLPPLTGGVVRFLLA
                     SVLLSGWLFARSRFA"
     gene            417..>535
                     /locus_tag="WHR98_002009"
     CDS             417..>535
                     /locus_tag="WHR98_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003690749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase"
                     /protein_id="HEZ2308625.1"
                     /translation="MKEHKARKRFGQNFLQDTRIISDIVNAVHPQADDIVIEIG"
BASE COUNT          178 a          170 c          101 g           86 t
ORIGIN      
        1 ccgcaaacct gctgcgcgca aacaaccaac ccgacaacaa aaccgaagcc agcagaaacc
       61 tgaccacccc gcccgtcaac ggcggcagag actgccccaa tatcctgccc ataggccaag
      121 acgcacccca taataccgcc atacccaaga gcttcacatg aatcagataa gtcctcatac
      181 agtacccaac cgtaaaaata ccaaaccaac agataagacc gaacaaaaca gcattatcaa
      241 gccccgccgt tttcggttac aatgtccaca tcaaaccgat attgtaaaca tattcacatt
      301 taaatgccga acaagatgtc catacggctt gccggattcc cccgaaacag aagggacacc
      361 ttcccaaaaa tccggcccgt atcctcaaaa ccggttgcac cggtcaagga aacccgatga
      421 aagaacacaa agcccgcaag cgtttcgggc agaacttttt acaagacacg cggatcatca
      481 gcgatattgt caacgccgtg cacccgcagg cggatgatat cgtgattgaa atcgg
//
LOCUS       DAWGNT010000276          531 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.276, whole genome shotgun sequence.
ACCESSION   DAWGNT010000276 DAWGNT010000000
VERSION     DAWGNT010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.276"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            <1..>531
                     /gene="rdgC"
                     /locus_tag="WHR98_002010"
     CDS             <1..>531
                     /gene="rdgC"
                     /locus_tag="WHR98_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003687870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HEZ2308626.1"
                     /translation="FAAPVSFSPELVFPADFTLRVALKKEEKVLPAGVIRDILEEKVA
                     EIQNNEARNVGRKEKQELKEQITDDLLPRAFTRSGRTEAVFNTRHGYLLVNNAASAKA
                     ENILTKLREALGGLEASLPNTKQSPSSLMTGWLLQGHCEGGFELDSDCELKGTGDIVP
                     VVKVSKQDLTADEVVQ"
BASE COUNT          136 a          150 c          136 g          109 t
ORIGIN      
        1 ctttgccgca ccggtttcgt tctctcccga actcgttttc cctgccgact ttaccttgcg
       61 cgtcgccctg aaaaaagagg aaaaagtcct gcctgccggt gtcatccgcg atattttgga
      121 agagaaggtg gcggaaatcc aaaacaatga agcccgcaat gtcggtcgca aagaaaaaca
      181 agagcttaaa gagcaaatta cagacgacct gctgccccga gcgtttaccc gcagcggccg
      241 tacagaggcg gtgtttaaca cccgccacgg ctatctgctc gtcaacaacg cggcttccgc
      301 caaagcagaa aacatcctga ccaagctgcg cgaagccttg ggcggtttgg aagcctcgct
      361 gccgaatacc aagcaatcgc cctcttccct gatgaccggc tggctgttgc aagggcattg
      421 cgaaggcggt tttgaattgg acagcgattg cgaactcaaa ggtacgggcg atattgttcc
      481 cgtcgtcaaa gtatccaaac aagatttaac cgccgacgaa gtggttcaac a
//
LOCUS       DAWGNT010000277          527 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.277, whole genome shotgun sequence.
ACCESSION   DAWGNT010000277 DAWGNT010000000
VERSION     DAWGNT010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.277"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            11..>527
                     /locus_tag="WHR98_002011"
     CDS             11..>527
                     /locus_tag="WHR98_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002248024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Opacity protein opA54"
                     /protein_id="HEZ2308627.1"
                     /translation="MQADLAYAAERITHDYPKATGANNTSTVSDYFRNIRAHSIHPRV
                     SVGYDFGDWRIAADYASYRKWKESNSSTNAENRDNAQNYVKIETKHQGNGSFHASSSL
                     GLSAIYDFKLNDKFKPYIGARIAYGHVRHQVHSVESKNTIITSKPKNGAAQGGPVPTG
                     FVGKPAYHESNS"
BASE COUNT          168 a          139 c          109 g          111 t
ORIGIN      
        1 cccgtattat gtgcaggcgg atttagccta tgccgccgaa cgcattaccc acgattatcc
       61 gaaagcaacc ggtgcaaaca acacaagcac agtaagcgat tatttcagaa acatccgtgc
      121 gcattccatc caccctcggg tgtcggtcgg ctacgatttc ggcgactgga gaatagcggc
      181 agattatgcc agttacagaa aatggaaaga aagtaattct tctactaatg cagaaaatag
      241 agataatgca caaaactacg taaagattga aacaaaacat caaggaaacg gcagcttcca
      301 cgcctcttct tctctcggct tatccgccat ttacgatttc aaactcaacg ataaattcaa
      361 accctatatc ggcgcgcgca tcgcctacgg acacgttagg catcaggttc attcagtgga
      421 aagcaaaaac acgattatta cctctaaacc aaagaacggc gctgcacagg gaggccctgt
      481 cccaacaggt tttgtcggca aacctgccta tcacgaaagc aacagca
//
LOCUS       DAWGNT010000278          509 bp    DNA     linear   BCT 18-MAR-2024
DEFINITION  TPA_asm: Neisseria meningitidis isolate M26248
            SAMN09011411-rid17420073.denovo.278, whole genome shotgun sequence.
ACCESSION   DAWGNT010000278 DAWGNT010000000
VERSION     DAWGNT010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN09011411
            Sequence Read Archive: SRR7106768
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales;
            Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 11-MAR-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001660020.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001660020.1
            Genome Coverage       :: 128x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 03/13/2023 19:08:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,012
            CDSs (total)                      :: 1,959
            Genes (coding)                    :: 1,878
            CDSs (with protein)               :: 1,878
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 40 of 81
            Pseudo Genes (incomplete)         :: 35 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN09011411-rid17420073.denovo.278"
                     /isolate="M26248"
                     /isolation_source="Sterile Site"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /country="USA"
                     /collection_date="2013"
                     /collected_by="US State Health Department"
     gene            354..509
                     /locus_tag="WHR98_002012"
                     /pseudo
     CDS             354..509
                     /locus_tag="WHR98_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010980743.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
BASE COUNT          166 a          138 c           99 g          106 t
ORIGIN      
        1 gcatagaaac accacctacg gctttctata aaaataccta aaccgtcatt cccacgaaag
       61 tgggaatcca gaacgcaaaa tctcaagaaa ccgttttccc gataagtttc cgtaccgaca
      121 gacctagatt cccgcctgcg cgggaatgac ggcggagcgg tttctgttgc tcccgataaa
      181 ttcctaaaac tcaaaatttc atcattccct caaaaacaga aaaccaaaaa cagcaaccta
      241 aaattcgtca ttcccacgaa agtgggaatc cagaacgcaa aatctaaaga aaccgtttta
      301 cccgataagt ttccgtaccg acagacctgg attcccgcct gcgcgggaat gacgaagcta
      361 tccttttggc tgaaggtcaa aaatcagccg tcaccgagta ttacctgaat cacggcatat
      421 ggcccggcga caacagttct gccggcgtgg caacctcctc taaaatcaaa ggaaaatatg
      481 ttaaggaagt tacaatcgca aacggcgtc
//
